Query 010991
Match_columns 496
No_of_seqs 382 out of 2405
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1123 RNA polymerase II tran 100.0 4E-124 8E-129 919.5 33.0 460 1-471 278-753 (776)
2 TIGR00603 rad25 DNA repair hel 100.0 4.2E-94 9.2E-99 767.4 49.1 475 1-493 231-732 (732)
3 COG1061 SSL2 DNA or RNA helica 100.0 5.8E-50 1.3E-54 416.9 34.5 367 5-395 17-420 (442)
4 KOG0385 Chromatin remodeling c 100.0 3.4E-45 7.4E-50 377.1 27.9 333 23-384 165-614 (971)
5 PHA02558 uvsW UvsW helicase; P 100.0 8.7E-42 1.9E-46 362.1 36.7 343 23-394 112-496 (501)
6 PLN03142 Probable chromatin-re 100.0 3E-42 6.6E-47 381.8 34.4 334 24-384 168-614 (1033)
7 KOG0384 Chromodomain-helicase 100.0 7.3E-42 1.6E-46 367.4 24.6 399 23-456 368-894 (1373)
8 KOG0389 SNF2 family DNA-depend 100.0 1.2E-41 2.6E-46 352.1 25.2 346 14-384 388-903 (941)
9 KOG0387 Transcription-coupled 100.0 1.9E-41 4.2E-46 351.1 25.9 335 24-384 204-675 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 7E-41 1.5E-45 358.3 22.8 336 16-377 966-1462(1549)
11 KOG0386 Chromatin remodeling c 100.0 6.3E-41 1.4E-45 354.1 16.6 371 23-429 392-889 (1157)
12 KOG0390 DNA repair protein, SN 100.0 5.9E-35 1.3E-39 310.5 29.5 346 23-395 236-730 (776)
13 PRK04914 ATP-dependent helicas 100.0 1.2E-33 2.6E-38 312.6 35.3 329 22-378 149-614 (956)
14 KOG0391 SNF2 family DNA-depend 100.0 6.3E-35 1.4E-39 309.7 20.6 149 23-185 613-779 (1958)
15 COG1111 MPH1 ERCC4-like helica 100.0 3.4E-33 7.4E-38 279.2 29.0 334 22-384 12-499 (542)
16 KOG0388 SNF2 family DNA-depend 100.0 5.7E-34 1.2E-38 291.0 20.1 327 23-378 565-1163(1185)
17 KOG1000 Chromatin remodeling p 100.0 4.8E-33 1E-37 275.3 24.5 333 24-384 197-618 (689)
18 PTZ00110 helicase; Provisional 100.0 1.1E-32 2.4E-37 294.7 23.0 304 25-385 152-498 (545)
19 PRK13766 Hef nuclease; Provisi 100.0 1.3E-30 2.9E-35 291.7 33.2 326 23-375 13-485 (773)
20 PRK10590 ATP-dependent RNA hel 100.0 2.1E-31 4.6E-36 280.2 23.7 276 24-345 22-341 (456)
21 PLN00206 DEAD-box ATP-dependen 100.0 4.4E-31 9.6E-36 281.4 26.1 305 24-386 142-490 (518)
22 PRK11192 ATP-dependent RNA hel 100.0 8.2E-31 1.8E-35 274.7 27.6 278 24-345 22-341 (434)
23 PRK11776 ATP-dependent RNA hel 100.0 2.3E-31 5E-36 280.7 22.8 284 25-368 26-348 (460)
24 PRK04837 ATP-dependent RNA hel 100.0 9.9E-32 2.2E-36 280.6 19.4 276 25-345 30-351 (423)
25 PRK01297 ATP-dependent RNA hel 100.0 6.3E-31 1.4E-35 278.3 23.9 300 25-383 109-454 (475)
26 PRK04537 ATP-dependent RNA hel 100.0 1.3E-30 2.8E-35 279.8 23.2 278 24-345 30-353 (572)
27 TIGR00614 recQ_fam ATP-depende 100.0 1.4E-29 2.9E-34 267.4 30.4 269 25-345 11-322 (470)
28 KOG0331 ATP-dependent RNA heli 100.0 1.7E-30 3.7E-35 266.2 21.8 282 24-345 112-437 (519)
29 KOG4439 RNA polymerase II tran 100.0 2.9E-30 6.3E-35 264.7 21.0 351 21-383 321-872 (901)
30 PRK11634 ATP-dependent RNA hel 100.0 4.4E-30 9.6E-35 277.4 22.5 276 24-345 27-341 (629)
31 PRK11448 hsdR type I restricti 100.0 1E-29 2.3E-34 287.2 25.0 322 23-367 411-816 (1123)
32 TIGR03817 DECH_helic helicase/ 100.0 1.2E-28 2.6E-33 271.2 32.7 317 25-383 36-400 (742)
33 KOG1002 Nucleotide excision re 100.0 6.3E-30 1.4E-34 253.0 20.2 342 23-377 182-757 (791)
34 KOG0330 ATP-dependent RNA heli 100.0 1.1E-29 2.4E-34 245.6 19.4 303 23-383 81-419 (476)
35 PTZ00424 helicase 45; Provisio 100.0 2.6E-29 5.7E-34 260.8 23.8 277 25-345 50-363 (401)
36 PRK11057 ATP-dependent DNA hel 100.0 1.5E-28 3.3E-33 266.3 28.5 267 25-345 25-332 (607)
37 PRK02362 ski2-like helicase; P 100.0 1.2E-28 2.7E-33 273.2 28.1 284 24-345 22-384 (737)
38 TIGR00580 mfd transcription-re 100.0 1.3E-28 2.8E-33 273.8 28.2 309 22-394 448-798 (926)
39 KOG1015 Transcription regulato 100.0 1.5E-29 3.3E-34 265.1 18.2 364 12-393 655-1298(1567)
40 COG0513 SrmB Superfamily II DN 100.0 2.9E-29 6.3E-34 266.1 20.6 304 24-383 50-393 (513)
41 TIGR01389 recQ ATP-dependent D 100.0 1.3E-27 2.8E-32 259.4 30.0 267 25-345 13-320 (591)
42 PRK13767 ATP-dependent helicas 100.0 1.8E-27 4E-32 266.7 30.0 289 24-344 31-385 (876)
43 PRK10689 transcription-repair 100.0 2E-27 4.3E-32 269.6 28.5 321 20-405 595-958 (1147)
44 PRK10917 ATP-dependent DNA hel 100.0 2.2E-27 4.8E-32 260.0 26.1 275 22-345 258-578 (681)
45 PRK00254 ski2-like helicase; P 100.0 2.5E-27 5.3E-32 262.3 26.4 281 24-345 22-375 (720)
46 PLN03137 ATP-dependent DNA hel 100.0 5.7E-27 1.2E-31 257.7 28.3 274 24-345 459-776 (1195)
47 PRK01172 ski2-like helicase; P 100.0 4.9E-27 1.1E-31 258.6 27.3 281 22-345 19-365 (674)
48 TIGR00643 recG ATP-dependent D 100.0 1.2E-26 2.6E-31 252.5 27.3 276 21-345 231-555 (630)
49 KOG0354 DEAD-box like helicase 99.9 6.7E-26 1.5E-30 239.2 27.0 152 19-183 56-223 (746)
50 KOG0350 DEAD-box ATP-dependent 99.9 1.7E-26 3.8E-31 229.5 18.3 308 24-368 158-539 (620)
51 TIGR00348 hsdR type I site-spe 99.9 8E-26 1.7E-30 246.7 24.4 325 23-367 236-649 (667)
52 KOG0328 Predicted ATP-dependen 99.9 4.7E-26 1E-30 211.9 19.0 300 25-384 49-386 (400)
53 KOG0340 ATP-dependent RNA heli 99.9 1.1E-25 2.3E-30 215.6 21.7 283 24-345 28-350 (442)
54 KOG0338 ATP-dependent RNA heli 99.9 2E-26 4.4E-31 229.3 17.2 291 25-369 203-533 (691)
55 COG1201 Lhr Lhr-like helicases 99.9 1.3E-25 2.8E-30 242.4 25.0 285 23-344 20-349 (814)
56 KOG0345 ATP-dependent RNA heli 99.9 4.1E-26 9E-31 225.5 19.1 278 25-345 28-353 (567)
57 KOG0333 U5 snRNP-like RNA heli 99.9 2.2E-25 4.8E-30 222.7 21.9 298 21-376 262-631 (673)
58 COG0553 HepA Superfamily II DN 99.9 1.3E-25 2.8E-30 255.0 22.0 336 23-381 336-834 (866)
59 KOG0342 ATP-dependent RNA heli 99.9 4.6E-26 1E-30 226.6 15.8 280 25-345 104-426 (543)
60 COG1204 Superfamily II helicas 99.9 4.3E-25 9.3E-30 241.1 24.9 283 25-345 31-395 (766)
61 KOG0343 RNA Helicase [RNA proc 99.9 9E-26 1.9E-30 226.5 17.4 278 24-345 90-411 (758)
62 TIGR02621 cas3_GSU0051 CRISPR- 99.9 6.4E-25 1.4E-29 238.2 25.5 285 23-345 13-379 (844)
63 COG4096 HsdR Type I site-speci 99.9 1.5E-25 3.3E-30 236.1 18.3 319 14-345 154-527 (875)
64 TIGR01587 cas3_core CRISPR-ass 99.9 4.3E-24 9.3E-29 218.4 28.1 281 46-369 2-338 (358)
65 COG1202 Superfamily II helicas 99.9 2.4E-24 5.2E-29 217.3 24.0 289 23-369 214-553 (830)
66 TIGR03158 cas3_cyano CRISPR-as 99.9 1.5E-23 3.2E-28 213.5 22.8 280 29-341 1-357 (357)
67 KOG0335 ATP-dependent RNA heli 99.9 2.7E-24 5.9E-29 217.2 17.1 286 20-345 91-433 (482)
68 COG1197 Mfd Transcription-repa 99.9 1.3E-22 2.8E-27 222.3 29.2 335 18-422 587-978 (1139)
69 COG1205 Distinct helicase fami 99.9 9.7E-23 2.1E-27 225.6 28.4 316 25-384 70-437 (851)
70 KOG0348 ATP-dependent RNA heli 99.9 4E-24 8.7E-29 214.1 15.7 303 25-345 159-543 (708)
71 KOG0326 ATP-dependent RNA heli 99.9 2.6E-24 5.6E-29 203.3 13.3 286 25-368 107-428 (459)
72 KOG0336 ATP-dependent RNA heli 99.9 2.5E-24 5.4E-29 209.3 13.4 278 25-345 242-561 (629)
73 KOG0339 ATP-dependent RNA heli 99.9 1E-23 2.2E-28 209.9 17.4 289 24-372 244-578 (731)
74 COG0514 RecQ Superfamily II DN 99.9 9.8E-23 2.1E-27 213.0 25.7 272 25-345 17-326 (590)
75 PRK09751 putative ATP-dependen 99.9 8.9E-23 1.9E-27 233.3 23.7 273 48-344 1-372 (1490)
76 KOG0347 RNA helicase [RNA proc 99.9 1.1E-23 2.5E-28 211.5 12.7 298 25-345 203-559 (731)
77 KOG0341 DEAD-box protein abstr 99.9 2.5E-23 5.4E-28 201.1 12.0 302 23-385 190-543 (610)
78 COG1200 RecG RecG-like helicas 99.9 1.5E-21 3.3E-26 203.6 24.1 309 22-394 259-614 (677)
79 KOG0346 RNA helicase [RNA proc 99.9 7.5E-22 1.6E-26 193.9 18.2 288 25-368 41-409 (569)
80 COG4098 comFA Superfamily II D 99.9 2E-20 4.3E-25 179.1 26.1 310 19-390 91-437 (441)
81 PHA02653 RNA helicase NPH-II; 99.9 7.1E-21 1.5E-25 205.5 25.4 270 29-344 168-503 (675)
82 KOG4284 DEAD box protein [Tran 99.9 2.8E-22 6.1E-27 204.5 12.3 283 24-345 46-368 (980)
83 KOG0952 DNA/RNA helicase MER3/ 99.9 3.5E-21 7.6E-26 206.0 20.3 309 25-376 110-498 (1230)
84 KOG1016 Predicted DNA helicase 99.9 1.1E-21 2.4E-26 202.8 14.4 374 25-420 254-891 (1387)
85 KOG0332 ATP-dependent RNA heli 99.9 1.7E-20 3.8E-25 181.0 21.2 303 25-383 112-456 (477)
86 PF00176 SNF2_N: SNF2 family N 99.9 4.1E-21 8.9E-26 191.0 15.3 198 29-234 1-258 (299)
87 TIGR01970 DEAH_box_HrpB ATP-de 99.9 6.6E-20 1.4E-24 202.4 26.3 276 31-369 8-336 (819)
88 KOG0334 RNA helicase [RNA proc 99.9 3.2E-21 6.9E-26 207.8 15.4 291 25-368 387-719 (997)
89 PF04851 ResIII: Type III rest 99.9 2.4E-21 5.2E-26 178.3 12.6 158 24-183 2-184 (184)
90 PRK09401 reverse gyrase; Revie 99.9 2.8E-20 6.1E-25 212.1 23.6 243 23-321 78-383 (1176)
91 KOG0344 ATP-dependent RNA heli 99.9 6.1E-21 1.3E-25 194.4 16.2 307 25-388 158-512 (593)
92 PRK11664 ATP-dependent RNA hel 99.8 1.7E-19 3.8E-24 199.5 26.0 276 31-369 11-339 (812)
93 TIGR03714 secA2 accessory Sec 99.8 4E-20 8.8E-25 199.2 20.3 132 23-158 66-208 (762)
94 KOG0337 ATP-dependent RNA heli 99.8 8.4E-21 1.8E-25 185.7 12.1 299 25-383 43-380 (529)
95 KOG0947 Cytoplasmic exosomal R 99.8 1.4E-19 3E-24 191.9 19.3 303 20-346 292-711 (1248)
96 PRK09694 helicase Cas3; Provis 99.8 4.9E-19 1.1E-23 195.7 24.6 299 23-345 284-664 (878)
97 PRK05580 primosome assembly pr 99.8 8.3E-19 1.8E-23 191.9 25.5 143 22-182 141-305 (679)
98 COG4889 Predicted helicase [Ge 99.8 4E-20 8.6E-25 193.9 13.5 317 17-348 153-577 (1518)
99 KOG1001 Helicase-like transcri 99.8 9.1E-20 2E-24 195.7 15.7 317 42-384 151-667 (674)
100 KOG0351 ATP-dependent DNA heli 99.8 2.2E-19 4.7E-24 198.0 17.1 289 24-366 263-592 (941)
101 PRK09200 preprotein translocas 99.8 5.8E-19 1.3E-23 192.0 19.5 130 23-158 76-212 (790)
102 TIGR00963 secA preprotein tran 99.8 2.2E-19 4.8E-24 192.4 15.9 311 24-345 55-506 (745)
103 PRK12898 secA preprotein trans 99.8 1.8E-18 3.9E-23 184.4 19.8 131 23-158 101-255 (656)
104 KOG0327 Translation initiation 99.8 6E-19 1.3E-23 171.7 13.9 286 25-370 48-371 (397)
105 TIGR00595 priA primosomal prot 99.8 4.4E-18 9.6E-23 180.0 21.8 118 47-182 1-140 (505)
106 PRK14701 reverse gyrase; Provi 99.8 2.8E-18 6.1E-23 199.9 21.4 244 23-321 77-385 (1638)
107 TIGR01054 rgy reverse gyrase. 99.8 5.9E-18 1.3E-22 193.4 23.6 242 23-321 76-382 (1171)
108 COG4581 Superfamily II RNA hel 99.8 1.6E-18 3.6E-23 190.2 18.0 304 18-346 112-525 (1041)
109 KOG0948 Nuclear exosomal RNA h 99.8 2.1E-18 4.6E-23 179.0 13.8 311 23-368 127-538 (1041)
110 KOG0352 ATP-dependent DNA heli 99.8 9.6E-18 2.1E-22 164.5 17.3 282 27-345 22-351 (641)
111 cd00268 DEADc DEAD-box helicas 99.7 1.3E-17 2.9E-22 156.5 13.7 149 24-183 20-186 (203)
112 KOG0951 RNA helicase BRR2, DEA 99.7 5.5E-17 1.2E-21 176.2 20.1 286 24-345 308-689 (1674)
113 PRK11131 ATP-dependent RNA hel 99.7 3.7E-16 7.9E-21 176.7 25.5 284 18-368 67-410 (1294)
114 TIGR01967 DEAH_box_HrpA ATP-de 99.7 4.9E-16 1.1E-20 176.2 25.4 286 20-369 62-404 (1283)
115 KOG0353 ATP-dependent DNA heli 99.7 4.3E-16 9.4E-21 150.8 19.4 267 25-335 94-403 (695)
116 PF00270 DEAD: DEAD/DEAH box h 99.7 9E-17 2E-21 146.0 13.8 145 27-182 1-163 (169)
117 COG1203 CRISPR-associated heli 99.7 4.9E-16 1.1E-20 171.8 22.0 306 25-372 195-555 (733)
118 PRK13104 secA preprotein trans 99.7 1.2E-15 2.6E-20 166.0 18.5 129 24-158 81-215 (896)
119 smart00487 DEXDc DEAD-like hel 99.7 6.5E-16 1.4E-20 142.9 14.3 152 23-184 6-173 (201)
120 cd00046 DEXDc DEAD-like helica 99.7 3.7E-16 8.1E-21 136.1 11.1 128 45-181 2-144 (144)
121 KOG0329 ATP-dependent RNA heli 99.7 2.4E-15 5.2E-20 138.8 15.0 259 25-345 64-344 (387)
122 TIGR00631 uvrb excinuclease AB 99.7 5E-14 1.1E-18 152.9 27.6 75 18-92 2-78 (655)
123 KOG0383 Predicted helicase [Ge 99.6 4.3E-17 9.4E-22 173.1 2.7 284 23-322 293-690 (696)
124 PRK12904 preprotein translocas 99.6 5.3E-15 1.1E-19 160.9 18.4 130 23-158 79-214 (830)
125 KOG0950 DNA polymerase theta/e 99.6 4.1E-15 9E-20 159.3 16.3 294 25-345 223-598 (1008)
126 PRK12906 secA preprotein trans 99.6 7.4E-15 1.6E-19 159.1 16.1 130 23-158 78-213 (796)
127 COG0556 UvrB Helicase subunit 99.6 1E-12 2.3E-17 133.1 25.4 76 17-92 4-81 (663)
128 PRK05298 excinuclease ABC subu 99.6 1.6E-12 3.4E-17 142.1 27.9 75 18-92 5-81 (652)
129 PRK13107 preprotein translocas 99.5 2.1E-13 4.7E-18 148.3 17.8 130 23-158 80-215 (908)
130 COG0610 Type I site-specific r 99.5 5.2E-13 1.1E-17 150.7 19.0 313 27-346 250-639 (962)
131 PRK12899 secA preprotein trans 99.5 7.5E-12 1.6E-16 136.7 22.7 134 21-158 88-228 (970)
132 KOG0922 DEAH-box RNA helicase 99.4 1.5E-11 3.2E-16 128.3 22.9 270 24-345 50-380 (674)
133 COG1110 Reverse gyrase [DNA re 99.4 8.4E-12 1.8E-16 134.9 19.4 124 22-158 79-216 (1187)
134 KOG0349 Putative DEAD-box RNA 99.4 3.9E-13 8.4E-18 132.5 7.2 268 70-368 288-614 (725)
135 TIGR01407 dinG_rel DnaQ family 99.4 8.4E-11 1.8E-15 132.9 24.6 63 22-86 242-310 (850)
136 COG1643 HrpA HrpA-like helicas 99.3 1.2E-10 2.6E-15 127.9 23.3 283 24-369 49-387 (845)
137 COG1198 PriA Primosomal protei 99.3 2E-10 4.3E-15 124.4 22.0 142 23-182 196-360 (730)
138 KOG0949 Predicted helicase, DE 99.3 2.3E-10 5.1E-15 122.9 20.0 152 24-184 510-674 (1330)
139 PRK12900 secA preprotein trans 99.3 2.2E-10 4.8E-15 125.7 20.1 130 20-158 133-271 (1025)
140 KOG0924 mRNA splicing factor A 99.2 2.4E-10 5.1E-15 118.7 16.2 269 44-375 372-703 (1042)
141 PRK12326 preprotein translocas 99.2 3.8E-10 8.3E-15 120.6 17.6 130 23-158 76-211 (764)
142 PF07652 Flavi_DEAD: Flaviviru 99.2 8.8E-11 1.9E-15 101.5 10.2 125 45-184 6-139 (148)
143 KOG0926 DEAH-box RNA helicase 99.2 3.9E-10 8.5E-15 119.0 15.6 209 44-296 272-511 (1172)
144 KOG0923 mRNA splicing factor A 99.1 1.1E-09 2.3E-14 113.8 16.0 271 24-346 264-597 (902)
145 cd00079 HELICc Helicase superf 99.1 4.4E-10 9.5E-15 97.1 9.7 92 252-345 13-124 (131)
146 PRK15483 type III restriction- 99.1 2.4E-09 5.1E-14 118.5 17.6 170 45-218 61-278 (986)
147 PRK13103 secA preprotein trans 99.1 1.7E-09 3.8E-14 118.3 15.8 129 24-158 81-215 (913)
148 KOG0953 Mitochondrial RNA heli 99.1 1.9E-09 4.1E-14 110.1 14.6 229 47-346 195-464 (700)
149 KOG0920 ATP-dependent RNA heli 99.1 1.1E-08 2.3E-13 112.6 20.4 298 23-369 171-544 (924)
150 PF13872 AAA_34: P-loop contai 99.0 2.2E-08 4.7E-13 97.2 17.4 211 23-234 35-301 (303)
151 TIGR02562 cas3_yersinia CRISPR 99.0 1.9E-07 4.1E-12 103.5 24.9 154 25-182 408-635 (1110)
152 PF02399 Herpes_ori_bp: Origin 98.9 3.6E-08 7.7E-13 106.5 17.7 273 45-345 51-378 (824)
153 PRK12903 secA preprotein trans 98.9 5.2E-08 1.1E-12 106.0 16.0 127 23-158 76-211 (925)
154 KOG0951 RNA helicase BRR2, DEA 98.8 1.1E-07 2.3E-12 105.3 17.2 258 44-345 1160-1486(1674)
155 KOG0298 DEAD box-containing he 98.8 4.3E-09 9.2E-14 116.4 6.1 150 44-195 375-564 (1394)
156 PRK07246 bifunctional ATP-depe 98.8 3.2E-08 6.9E-13 110.9 12.3 67 22-90 242-314 (820)
157 smart00489 DEXDc3 DEAD-like he 98.7 1E-07 2.2E-12 94.3 12.5 68 22-91 5-84 (289)
158 smart00488 DEXDc2 DEAD-like he 98.7 1E-07 2.2E-12 94.3 12.5 68 22-91 5-84 (289)
159 TIGR03117 cas_csf4 CRISPR-asso 98.7 6.1E-08 1.3E-12 104.4 10.7 61 30-92 2-70 (636)
160 KOG0925 mRNA splicing factor A 98.7 3.2E-07 6.9E-12 92.7 13.7 211 27-288 49-273 (699)
161 CHL00122 secA preprotein trans 98.7 6.4E-07 1.4E-11 98.1 16.9 127 23-158 74-209 (870)
162 PF00271 Helicase_C: Helicase 98.6 3.1E-08 6.8E-13 77.8 4.3 54 290-344 10-78 (78)
163 PF13086 AAA_11: AAA domain; P 98.5 1E-06 2.2E-11 83.8 12.5 63 25-90 1-75 (236)
164 PRK12902 secA preprotein trans 98.5 5.5E-06 1.2E-10 90.9 18.8 127 23-158 83-218 (939)
165 PRK08074 bifunctional ATP-depe 98.5 8.6E-07 1.9E-11 101.1 12.9 63 22-86 254-323 (928)
166 KOG4150 Predicted ATP-dependen 98.4 2.1E-06 4.6E-11 88.2 10.5 310 25-384 286-655 (1034)
167 smart00490 HELICc helicase sup 98.4 7.3E-07 1.6E-11 69.9 5.8 54 290-344 14-82 (82)
168 PF02562 PhoH: PhoH-like prote 98.3 1.7E-06 3.7E-11 80.5 8.5 142 26-187 5-161 (205)
169 PF13604 AAA_30: AAA domain; P 98.3 1.3E-05 2.7E-10 74.9 13.3 127 25-182 1-131 (196)
170 PRK11747 dinG ATP-dependent DN 98.3 3.7E-06 8E-11 93.1 11.3 64 22-85 22-95 (697)
171 PRK14873 primosome assembly pr 98.2 3.8E-06 8.2E-11 91.8 9.8 121 45-182 162-304 (665)
172 PF07517 SecA_DEAD: SecA DEAD- 98.2 3.1E-06 6.8E-11 82.0 7.1 127 23-158 75-210 (266)
173 PRK12901 secA preprotein trans 98.2 4.3E-05 9.3E-10 85.0 16.2 128 22-158 166-303 (1112)
174 COG3587 Restriction endonuclea 98.1 1.2E-05 2.6E-10 86.7 9.9 164 45-219 76-270 (985)
175 PRK10536 hypothetical protein; 98.0 9E-06 2E-10 77.9 6.4 150 19-186 53-217 (262)
176 KOG1802 RNA helicase nonsense 98.0 1.6E-05 3.6E-10 83.3 8.6 63 25-90 410-476 (935)
177 PF13401 AAA_22: AAA domain; P 98.0 4.7E-05 1E-09 65.7 9.9 111 44-182 5-126 (131)
178 PF12340 DUF3638: Protein of u 98.0 4.2E-05 9.2E-10 72.0 9.3 143 18-163 16-190 (229)
179 KOG1803 DNA helicase [Replicat 97.9 3.6E-05 7.9E-10 80.4 9.3 66 22-89 182-250 (649)
180 PF09848 DUF2075: Uncharacteri 97.9 4.7E-05 1E-09 77.7 9.4 90 45-159 3-97 (352)
181 TIGR01448 recD_rel helicase, p 97.8 0.00035 7.7E-09 77.7 15.6 129 22-182 320-453 (720)
182 COG3421 Uncharacterized protei 97.8 7.3E-05 1.6E-09 77.9 9.2 165 48-216 2-197 (812)
183 TIGR01447 recD exodeoxyribonuc 97.8 0.00016 3.5E-09 78.3 11.4 141 28-182 148-296 (586)
184 TIGR00376 DNA helicase, putati 97.8 0.00037 7.9E-09 76.5 14.2 65 24-90 156-223 (637)
185 KOG1513 Nuclear helicase MOP-3 97.7 0.00048 1E-08 73.9 13.5 257 21-288 260-580 (1300)
186 PRK10875 recD exonuclease V su 97.7 0.00025 5.5E-09 77.0 11.5 143 26-182 153-302 (615)
187 cd00009 AAA The AAA+ (ATPases 97.5 0.002 4.4E-08 55.7 12.6 49 30-78 6-57 (151)
188 PF13245 AAA_19: Part of AAA d 97.5 0.00032 7E-09 54.7 6.4 54 33-88 2-62 (76)
189 COG2256 MGS1 ATPase related to 97.3 0.0017 3.6E-08 65.5 10.9 104 33-182 38-141 (436)
190 KOG1132 Helicase of the DEAD s 97.3 0.0005 1.1E-08 74.9 7.7 43 19-61 15-58 (945)
191 PRK08181 transposase; Validate 97.3 0.0017 3.7E-08 63.4 10.8 55 26-83 88-148 (269)
192 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0026 5.7E-08 71.1 12.8 124 22-181 349-476 (744)
193 PRK04296 thymidine kinase; Pro 97.3 0.0011 2.4E-08 61.5 8.2 33 45-77 4-39 (190)
194 COG1199 DinG Rad3-related DNA 97.2 0.00052 1.1E-08 76.1 7.0 70 22-91 12-86 (654)
195 COG1875 NYN ribonuclease and A 97.2 0.0014 3.1E-08 65.1 8.7 41 147-187 353-393 (436)
196 PRK06526 transposase; Provisio 97.2 0.002 4.3E-08 62.6 9.7 100 37-182 94-202 (254)
197 KOG1805 DNA replication helica 97.2 0.0012 2.6E-08 72.7 8.6 118 25-160 669-811 (1100)
198 PRK13342 recombination factor 97.2 0.0037 8E-08 65.3 12.0 43 34-76 27-69 (413)
199 PF06862 DUF1253: Protein of u 97.2 0.031 6.8E-07 58.0 18.3 78 266-344 298-397 (442)
200 smart00382 AAA ATPases associa 97.1 0.0028 6.1E-08 54.2 8.9 36 44-79 3-41 (148)
201 KOG0952 DNA/RNA helicase MER3/ 97.1 0.00053 1.1E-08 75.8 5.0 111 44-160 944-1061(1230)
202 COG0653 SecA Preprotein transl 97.1 0.0037 8E-08 68.9 11.3 110 45-158 95-213 (822)
203 PRK13889 conjugal transfer rel 97.1 0.004 8.7E-08 71.0 11.8 124 23-182 344-471 (988)
204 PLN03025 replication factor C 96.9 0.0083 1.8E-07 60.4 11.7 40 28-67 19-58 (319)
205 PRK13341 recombination factor 96.9 0.0072 1.6E-07 67.1 11.7 39 33-71 42-80 (725)
206 TIGR02881 spore_V_K stage V sp 96.8 0.0063 1.4E-07 59.4 9.2 23 44-66 43-65 (261)
207 PHA02544 44 clamp loader, smal 96.8 0.015 3.3E-07 58.2 11.9 53 25-77 24-77 (316)
208 KOG1131 RNA polymerase II tran 96.7 0.02 4.2E-07 59.4 12.4 38 25-64 16-56 (755)
209 TIGR00604 rad3 DNA repair heli 96.7 0.0041 9E-08 69.4 8.4 66 25-90 10-82 (705)
210 PRK14956 DNA polymerase III su 96.7 0.015 3.2E-07 61.1 11.7 37 32-68 28-65 (484)
211 PRK12723 flagellar biosynthesi 96.7 0.018 3.8E-07 59.3 12.0 107 44-182 175-298 (388)
212 PRK13826 Dtr system oriT relax 96.7 0.019 4.2E-07 66.0 13.1 124 23-182 379-506 (1102)
213 TIGR03015 pepcterm_ATPase puta 96.6 0.049 1.1E-06 53.1 14.3 43 26-68 24-68 (269)
214 PRK07003 DNA polymerase III su 96.6 0.019 4.1E-07 63.1 11.8 38 144-181 118-158 (830)
215 TIGR00596 rad1 DNA repair prot 96.6 0.013 2.9E-07 65.6 11.0 65 112-184 6-75 (814)
216 PRK12402 replication factor C 96.6 0.0087 1.9E-07 60.5 8.9 43 26-68 19-61 (337)
217 PRK12323 DNA polymerase III su 96.5 0.017 3.6E-07 62.6 10.9 37 144-180 123-162 (700)
218 KOG0989 Replication factor C, 96.5 0.0047 1E-07 60.1 5.6 42 28-69 39-83 (346)
219 PRK05707 DNA polymerase III su 96.5 0.028 6.2E-07 56.6 11.4 43 25-67 3-46 (328)
220 PRK14960 DNA polymerase III su 96.4 0.028 6.1E-07 61.0 11.7 42 27-68 20-62 (702)
221 PRK14958 DNA polymerase III su 96.4 0.026 5.7E-07 60.3 11.5 40 29-68 23-63 (509)
222 PF05876 Terminase_GpA: Phage 96.4 0.02 4.3E-07 62.0 10.6 147 22-185 13-183 (557)
223 KOG0739 AAA+-type ATPase [Post 96.4 0.033 7.2E-07 54.1 10.6 54 37-91 158-213 (439)
224 PHA02533 17 large terminase pr 96.4 0.041 8.9E-07 59.1 12.5 142 23-182 57-210 (534)
225 PRK14949 DNA polymerase III su 96.3 0.033 7.1E-07 62.4 11.9 35 34-68 28-63 (944)
226 PF05970 PIF1: PIF1-like helic 96.3 0.016 3.5E-07 59.4 8.9 114 25-165 1-122 (364)
227 PRK08727 hypothetical protein; 96.3 0.062 1.3E-06 51.5 12.3 31 44-74 42-75 (233)
228 KOG0298 DEAD box-containing he 96.3 0.005 1.1E-07 69.7 5.2 110 251-376 1203-1333(1394)
229 KOG2028 ATPase related to the 96.3 0.023 5E-07 56.6 9.2 104 34-182 153-259 (554)
230 COG1484 DnaC DNA replication p 96.2 0.051 1.1E-06 52.7 11.2 48 42-89 104-153 (254)
231 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.036 7.9E-07 52.5 9.9 37 31-67 26-62 (226)
232 PF00448 SRP54: SRP54-type pro 96.1 0.087 1.9E-06 49.0 12.1 113 45-182 3-126 (196)
233 PRK14962 DNA polymerase III su 96.1 0.035 7.7E-07 58.7 10.6 42 27-68 19-61 (472)
234 PRK08084 DNA replication initi 96.1 0.06 1.3E-06 51.6 11.1 35 31-65 33-67 (235)
235 PF05496 RuvB_N: Holliday junc 96.1 0.028 6.2E-07 52.9 8.4 30 44-73 51-80 (233)
236 PF05621 TniB: Bacterial TniB 96.1 0.031 6.7E-07 55.0 9.0 134 21-182 33-190 (302)
237 PF00004 AAA: ATPase family as 96.0 0.023 4.9E-07 48.5 7.1 33 46-78 1-33 (132)
238 PF00580 UvrD-helicase: UvrD/R 96.0 0.017 3.7E-07 57.4 7.1 62 26-92 1-69 (315)
239 PRK07994 DNA polymerase III su 96.0 0.075 1.6E-06 58.2 12.2 37 144-180 118-157 (647)
240 PF01443 Viral_helicase1: Vira 96.0 0.014 3.1E-07 55.5 6.1 98 47-183 2-99 (234)
241 PRK07764 DNA polymerase III su 95.9 0.074 1.6E-06 60.0 12.4 129 27-180 20-158 (824)
242 PF13871 Helicase_C_4: Helicas 95.9 0.066 1.4E-06 52.3 10.4 72 304-388 52-147 (278)
243 PRK14951 DNA polymerase III su 95.9 0.05 1.1E-06 59.3 10.5 38 144-181 123-163 (618)
244 PRK11889 flhF flagellar biosyn 95.9 0.099 2.1E-06 53.6 11.7 109 44-182 242-363 (436)
245 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.096 2.1E-06 50.3 11.2 60 31-91 7-71 (237)
246 PRK07952 DNA replication prote 95.8 0.14 3E-06 49.3 12.1 57 28-89 79-143 (244)
247 PRK14961 DNA polymerase III su 95.8 0.11 2.3E-06 53.3 12.0 40 29-68 20-63 (363)
248 PRK04195 replication factor C 95.7 0.058 1.3E-06 57.6 10.0 52 26-77 18-73 (482)
249 PHA03333 putative ATPase subun 95.7 0.21 4.7E-06 54.3 14.0 144 27-185 171-335 (752)
250 PRK00440 rfc replication facto 95.7 0.14 3.1E-06 51.1 12.2 41 27-67 22-62 (319)
251 PRK08691 DNA polymerase III su 95.6 0.093 2E-06 57.5 11.2 40 29-68 23-63 (709)
252 PRK14952 DNA polymerase III su 95.6 0.1 2.3E-06 56.5 11.5 41 28-68 19-60 (584)
253 PF13177 DNA_pol3_delta2: DNA 95.6 0.24 5.1E-06 44.6 12.0 121 36-181 11-141 (162)
254 PRK05642 DNA replication initi 95.6 0.11 2.3E-06 49.9 10.4 37 144-180 96-138 (234)
255 PRK11054 helD DNA helicase IV; 95.5 0.033 7.2E-07 61.7 7.6 80 23-126 194-280 (684)
256 PF02456 Adeno_IVa2: Adenoviru 95.5 0.034 7.3E-07 54.3 6.6 104 45-155 89-206 (369)
257 cd01124 KaiC KaiC is a circadi 95.5 0.1 2.3E-06 47.6 9.8 45 46-91 2-49 (187)
258 TIGR00635 ruvB Holliday juncti 95.5 0.088 1.9E-06 52.4 10.0 28 43-70 30-57 (305)
259 PF00265 TK: Thymidine kinase; 95.5 0.095 2.1E-06 47.9 9.2 34 46-79 4-40 (176)
260 PRK04328 hypothetical protein; 95.5 0.15 3.2E-06 49.4 11.1 59 32-91 10-73 (249)
261 PRK09111 DNA polymerase III su 95.5 0.12 2.7E-06 56.2 11.6 42 27-68 29-71 (598)
262 PRK06645 DNA polymerase III su 95.5 0.096 2.1E-06 55.9 10.6 40 29-68 25-68 (507)
263 PRK14969 DNA polymerase III su 95.4 0.15 3.2E-06 55.0 12.0 41 28-68 22-63 (527)
264 PRK00149 dnaA chromosomal repl 95.4 0.19 4.2E-06 53.1 12.5 43 44-87 149-196 (450)
265 PRK12377 putative replication 95.4 0.11 2.5E-06 50.1 9.8 43 44-87 102-147 (248)
266 PRK07940 DNA polymerase III su 95.4 0.16 3.5E-06 52.5 11.5 25 43-67 36-60 (394)
267 PRK14955 DNA polymerase III su 95.4 0.15 3.3E-06 52.9 11.5 40 29-68 23-63 (397)
268 PRK08116 hypothetical protein; 95.4 0.31 6.6E-06 47.8 12.9 43 45-88 116-161 (268)
269 PRK06893 DNA replication initi 95.3 0.12 2.7E-06 49.3 9.7 22 45-66 41-62 (229)
270 TIGR02760 TraI_TIGR conjugativ 95.3 0.22 4.8E-06 61.5 14.0 136 23-181 427-566 (1960)
271 cd01121 Sms Sms (bacterial rad 95.3 0.14 3E-06 52.6 10.6 99 31-158 68-171 (372)
272 PRK14722 flhF flagellar biosyn 95.2 0.15 3.3E-06 52.1 10.7 111 43-182 137-258 (374)
273 CHL00181 cbbX CbbX; Provisiona 95.2 0.1 2.3E-06 51.6 9.3 22 45-66 61-82 (287)
274 PRK14974 cell division protein 95.2 0.21 4.5E-06 50.5 11.6 112 44-181 141-264 (336)
275 TIGR01075 uvrD DNA helicase II 95.2 0.095 2.1E-06 58.8 10.0 81 25-127 4-91 (715)
276 PRK14957 DNA polymerase III su 95.2 0.19 4.1E-06 54.1 11.7 38 31-68 25-63 (546)
277 TIGR02639 ClpA ATP-dependent C 95.2 0.16 3.4E-06 57.2 11.6 41 27-67 187-227 (731)
278 PRK14963 DNA polymerase III su 95.2 0.16 3.5E-06 54.3 11.0 37 144-180 115-154 (504)
279 PRK06921 hypothetical protein; 95.2 0.11 2.4E-06 50.9 9.1 40 43-83 117-160 (266)
280 PRK14959 DNA polymerase III su 95.1 0.16 3.4E-06 55.3 11.0 41 28-68 22-63 (624)
281 PRK14964 DNA polymerase III su 95.1 0.045 9.8E-07 58.0 6.7 126 28-181 19-155 (491)
282 PRK03992 proteasome-activating 95.1 0.077 1.7E-06 54.9 8.4 34 43-76 165-198 (389)
283 PRK00080 ruvB Holliday junctio 95.1 0.15 3.3E-06 51.5 10.3 45 26-70 29-78 (328)
284 PRK11773 uvrD DNA-dependent he 95.1 0.12 2.7E-06 58.0 10.3 81 25-127 9-96 (721)
285 PRK14712 conjugal transfer nic 95.0 0.21 4.5E-06 59.7 12.3 127 24-182 834-968 (1623)
286 PRK05563 DNA polymerase III su 95.0 0.25 5.4E-06 53.6 12.1 41 27-67 21-62 (559)
287 KOG0991 Replication factor C, 95.0 0.04 8.7E-07 51.7 5.0 100 41-177 46-148 (333)
288 PRK13709 conjugal transfer nic 95.0 0.13 2.8E-06 62.2 10.5 126 24-181 966-1099(1747)
289 KOG0921 Dosage compensation co 94.9 0.14 3E-06 56.6 9.6 141 27-181 380-535 (1282)
290 PRK11823 DNA repair protein Ra 94.9 0.19 4.2E-06 52.9 10.6 99 31-158 66-169 (446)
291 TIGR02928 orc1/cdc6 family rep 94.9 0.33 7.1E-06 49.6 12.2 44 23-66 16-63 (365)
292 cd01120 RecA-like_NTPases RecA 94.8 0.12 2.6E-06 45.6 7.9 34 46-79 2-38 (165)
293 PRK06647 DNA polymerase III su 94.8 0.29 6.4E-06 53.0 12.0 41 28-68 22-63 (563)
294 PRK05896 DNA polymerase III su 94.8 0.11 2.5E-06 56.1 8.6 41 27-67 21-62 (605)
295 TIGR02760 TraI_TIGR conjugativ 94.7 0.42 9.1E-06 59.2 14.2 126 23-182 1017-1150(1960)
296 PF05127 Helicase_RecD: Helica 94.7 0.03 6.4E-07 51.0 3.4 121 47-187 1-129 (177)
297 COG1419 FlhF Flagellar GTP-bin 94.7 0.51 1.1E-05 48.3 12.5 130 26-185 182-327 (407)
298 PRK00411 cdc6 cell division co 94.7 0.38 8.2E-06 49.8 12.2 44 24-67 32-79 (394)
299 PRK10919 ATP-dependent DNA hel 94.7 0.068 1.5E-06 59.4 6.9 64 25-93 2-72 (672)
300 PTZ00454 26S protease regulato 94.6 0.13 2.8E-06 53.3 8.5 35 42-76 178-212 (398)
301 PRK14965 DNA polymerase III su 94.6 0.28 6E-06 53.5 11.3 42 27-68 21-63 (576)
302 PRK05703 flhF flagellar biosyn 94.6 0.31 6.7E-06 51.0 11.2 110 44-182 222-343 (424)
303 PRK08903 DnaA regulatory inact 94.5 0.42 9.2E-06 45.3 11.3 38 29-66 27-65 (227)
304 TIGR01074 rep ATP-dependent DN 94.5 0.25 5.4E-06 55.0 11.1 81 26-127 2-89 (664)
305 PTZ00293 thymidine kinase; Pro 94.5 0.34 7.3E-06 45.4 10.1 35 45-79 6-43 (211)
306 TIGR00362 DnaA chromosomal rep 94.5 0.19 4.2E-06 52.3 9.5 37 45-82 138-179 (405)
307 PF13173 AAA_14: AAA domain 94.4 0.42 9.1E-06 41.0 10.0 25 44-68 3-27 (128)
308 TIGR02880 cbbX_cfxQ probable R 94.4 0.16 3.5E-06 50.2 8.2 22 45-66 60-81 (284)
309 PRK06067 flagellar accessory p 94.4 0.24 5.2E-06 47.3 9.2 60 31-91 11-75 (234)
310 PF06745 KaiC: KaiC; InterPro 94.4 0.09 1.9E-06 49.9 6.2 58 33-91 7-70 (226)
311 TIGR02237 recomb_radB DNA repa 94.3 0.26 5.6E-06 46.1 9.2 43 36-78 3-50 (209)
312 PRK14948 DNA polymerase III su 94.3 0.39 8.4E-06 52.8 11.6 36 33-68 27-63 (620)
313 CHL00095 clpC Clp protease ATP 94.3 0.16 3.6E-06 57.8 9.1 41 27-67 184-224 (821)
314 COG0470 HolB ATPase involved i 94.3 0.31 6.7E-06 48.7 10.1 37 144-180 108-147 (325)
315 TIGR02012 tigrfam_recA protein 94.3 0.28 6.1E-06 49.1 9.6 53 31-83 40-98 (321)
316 COG0542 clpA ATP-binding subun 94.2 0.35 7.6E-06 53.7 10.8 108 30-169 496-617 (786)
317 PRK11034 clpA ATP-dependent Cl 94.2 0.12 2.6E-06 57.9 7.4 93 44-169 489-581 (758)
318 PRK08451 DNA polymerase III su 94.1 0.64 1.4E-05 49.9 12.5 37 31-67 23-60 (535)
319 TIGR01242 26Sp45 26S proteasom 94.1 0.19 4E-06 51.6 8.3 33 43-75 156-188 (364)
320 COG1474 CDC6 Cdc6-related prot 94.1 0.41 8.8E-06 49.1 10.6 46 23-68 18-67 (366)
321 PRK08533 flagellar accessory p 94.1 0.26 5.6E-06 47.1 8.6 46 44-90 25-73 (230)
322 PRK14087 dnaA chromosomal repl 94.1 0.42 9.2E-06 50.4 11.0 95 44-180 142-247 (450)
323 cd01123 Rad51_DMC1_radA Rad51_ 94.0 0.3 6.5E-06 46.5 9.1 47 32-78 6-63 (235)
324 cd00983 recA RecA is a bacter 94.0 0.27 5.8E-06 49.3 8.9 56 29-84 38-99 (325)
325 cd01393 recA_like RecA is a b 94.0 0.28 6E-06 46.4 8.8 48 32-79 6-64 (226)
326 COG1444 Predicted P-loop ATPas 94.0 0.87 1.9E-05 50.4 13.3 134 27-182 213-357 (758)
327 PF01695 IstB_IS21: IstB-like 93.9 0.13 2.8E-06 47.1 6.0 39 44-83 48-89 (178)
328 PRK06871 DNA polymerase III su 93.9 0.66 1.4E-05 46.7 11.4 43 25-67 2-48 (325)
329 PRK14971 DNA polymerase III su 93.8 0.68 1.5E-05 50.8 12.3 121 29-180 24-159 (614)
330 COG1435 Tdk Thymidine kinase [ 93.8 0.65 1.4E-05 42.7 10.0 33 46-78 7-42 (201)
331 TIGR03346 chaperone_ClpB ATP-d 93.8 0.32 6.9E-06 55.7 10.1 38 30-67 178-218 (852)
332 COG1222 RPT1 ATP-dependent 26S 93.8 0.21 4.6E-06 49.9 7.4 40 42-82 184-223 (406)
333 PF01745 IPT: Isopentenyl tran 93.8 0.067 1.5E-06 49.8 3.7 29 46-74 4-32 (233)
334 PTZ00112 origin recognition co 93.7 0.43 9.4E-06 53.5 10.3 44 23-66 756-804 (1164)
335 TIGR01547 phage_term_2 phage t 93.7 0.44 9.6E-06 49.4 10.2 126 45-184 3-143 (396)
336 PRK06964 DNA polymerase III su 93.6 0.65 1.4E-05 47.1 10.9 42 26-67 2-45 (342)
337 PRK14953 DNA polymerase III su 93.6 0.31 6.8E-06 51.9 9.0 36 33-68 27-63 (486)
338 PRK14950 DNA polymerase III su 93.6 0.25 5.3E-06 54.1 8.4 36 33-68 27-63 (585)
339 PRK08769 DNA polymerase III su 93.5 0.34 7.3E-06 48.7 8.6 43 25-67 4-50 (319)
340 PRK09354 recA recombinase A; P 93.5 0.44 9.6E-06 48.2 9.4 52 31-82 45-102 (349)
341 PRK14954 DNA polymerase III su 93.5 1.1 2.3E-05 49.2 13.0 35 34-68 28-63 (620)
342 PRK07133 DNA polymerase III su 93.5 0.72 1.6E-05 51.1 11.7 41 28-68 24-65 (725)
343 COG1219 ClpX ATP-dependent pro 93.4 0.085 1.8E-06 51.9 4.0 31 44-74 98-128 (408)
344 CHL00176 ftsH cell division pr 93.4 0.5 1.1E-05 52.0 10.4 34 43-76 216-249 (638)
345 PRK04132 replication factor C 93.4 0.35 7.6E-06 54.5 9.3 90 49-182 572-670 (846)
346 TIGR03499 FlhF flagellar biosy 93.3 0.32 7E-06 48.0 8.1 32 44-75 195-231 (282)
347 TIGR01243 CDC48 AAA family ATP 93.3 0.21 4.6E-06 56.2 7.6 35 43-77 487-521 (733)
348 TIGR01241 FtsH_fam ATP-depende 93.2 0.41 8.8E-06 51.3 9.3 34 43-76 88-121 (495)
349 TIGR02397 dnaX_nterm DNA polym 93.2 1 2.2E-05 45.7 11.9 41 28-68 20-61 (355)
350 PF00308 Bac_DnaA: Bacterial d 93.2 1.9 4.1E-05 40.8 12.8 43 138-182 92-141 (219)
351 PF03237 Terminase_6: Terminas 93.1 1.5 3.3E-05 44.2 13.2 110 47-168 1-120 (384)
352 PRK10865 protein disaggregatio 93.1 0.45 9.7E-06 54.4 9.9 38 30-67 183-223 (857)
353 PRK09112 DNA polymerase III su 93.1 1 2.3E-05 45.8 11.6 38 30-67 28-69 (351)
354 KOG1807 Helicases [Replication 93.1 0.17 3.6E-06 55.1 5.8 65 23-90 376-449 (1025)
355 TIGR02640 gas_vesic_GvpN gas v 93.1 0.23 4.9E-06 48.5 6.5 48 28-77 5-55 (262)
356 PRK09183 transposase/IS protei 93.0 0.16 3.4E-06 49.5 5.3 40 44-84 103-145 (259)
357 TIGR02238 recomb_DMC1 meiotic 93.0 0.44 9.6E-06 47.7 8.5 48 32-79 83-141 (313)
358 TIGR00678 holB DNA polymerase 93.0 1.1 2.4E-05 41.0 10.7 34 34-67 4-38 (188)
359 PRK07471 DNA polymerase III su 92.9 0.87 1.9E-05 46.7 10.8 39 29-67 23-65 (365)
360 PRK12422 chromosomal replicati 92.9 0.52 1.1E-05 49.6 9.3 38 44-82 142-182 (445)
361 PRK09361 radB DNA repair and r 92.9 0.64 1.4E-05 44.0 9.2 46 32-77 10-60 (225)
362 PRK14086 dnaA chromosomal repl 92.8 0.76 1.6E-05 49.9 10.5 43 45-88 316-363 (617)
363 TIGR03345 VI_ClpV1 type VI sec 92.8 0.44 9.6E-06 54.3 9.3 32 45-76 598-631 (852)
364 PRK08699 DNA polymerase III su 92.8 0.84 1.8E-05 46.0 10.3 42 26-67 2-45 (325)
365 PLN03187 meiotic recombination 92.8 0.48 1E-05 48.0 8.5 47 32-78 113-170 (344)
366 COG0464 SpoVK ATPases of the A 92.8 0.28 6.1E-06 52.5 7.3 47 43-90 276-322 (494)
367 PRK14088 dnaA chromosomal repl 92.8 0.97 2.1E-05 47.6 11.1 23 44-66 131-153 (440)
368 PF06733 DEAD_2: DEAD_2; Inte 92.7 0.14 3E-06 46.6 4.2 42 111-160 117-160 (174)
369 PRK08939 primosomal protein Dn 92.7 0.66 1.4E-05 46.4 9.3 41 44-85 157-200 (306)
370 KOG0738 AAA+-type ATPase [Post 92.7 0.22 4.8E-06 50.3 5.7 48 43-91 245-292 (491)
371 PTZ00361 26 proteosome regulat 92.6 0.32 7E-06 50.9 7.2 34 43-76 217-250 (438)
372 PRK06620 hypothetical protein; 92.6 0.43 9.3E-06 45.1 7.5 36 145-180 85-121 (214)
373 TIGR01073 pcrA ATP-dependent D 92.6 0.52 1.1E-05 53.0 9.4 81 25-127 4-91 (726)
374 TIGR00416 sms DNA repair prote 92.6 0.78 1.7E-05 48.5 10.1 99 31-158 80-183 (454)
375 cd00544 CobU Adenosylcobinamid 92.5 1.3 2.8E-05 40.2 10.2 46 46-91 2-47 (169)
376 TIGR02639 ClpA ATP-dependent C 92.5 0.46 1E-05 53.5 8.7 30 45-74 486-515 (731)
377 PF03354 Terminase_1: Phage Te 92.4 0.65 1.4E-05 49.5 9.4 65 28-92 1-78 (477)
378 PF08423 Rad51: Rad51; InterP 92.4 0.52 1.1E-05 45.8 8.0 110 32-157 25-145 (256)
379 PHA02244 ATPase-like protein 92.4 0.24 5.2E-06 50.3 5.7 44 30-75 108-151 (383)
380 PRK06835 DNA replication prote 92.4 0.58 1.3E-05 47.2 8.5 61 23-84 158-226 (329)
381 PRK11034 clpA ATP-dependent Cl 92.3 0.52 1.1E-05 52.9 8.8 29 37-65 201-229 (758)
382 PRK13833 conjugal transfer pro 92.3 0.26 5.5E-06 49.5 5.8 56 23-80 126-186 (323)
383 cd01125 repA Hexameric Replica 92.1 1.3 2.7E-05 42.5 10.3 32 45-76 3-49 (239)
384 TIGR02655 circ_KaiC circadian 92.1 1.1 2.4E-05 47.8 10.7 63 28-91 246-313 (484)
385 CHL00195 ycf46 Ycf46; Provisio 92.1 0.31 6.7E-06 51.8 6.4 35 42-76 258-292 (489)
386 CHL00095 clpC Clp protease ATP 92.0 0.45 9.7E-06 54.3 7.9 34 45-78 541-576 (821)
387 TIGR01650 PD_CobS cobaltochela 92.0 0.5 1.1E-05 47.4 7.3 56 21-78 44-99 (327)
388 PRK08058 DNA polymerase III su 91.9 1.4 3.1E-05 44.5 10.8 37 144-180 109-148 (329)
389 PRK14970 DNA polymerase III su 91.9 1.9 4.2E-05 44.1 11.9 41 28-68 23-64 (367)
390 KOG0740 AAA+-type ATPase [Post 91.8 0.4 8.6E-06 49.6 6.5 46 44-90 187-232 (428)
391 PRK06305 DNA polymerase III su 91.7 1.9 4.1E-05 45.6 11.8 39 30-68 22-64 (451)
392 PRK04301 radA DNA repair and r 91.7 1 2.2E-05 45.3 9.3 47 32-78 89-146 (317)
393 PRK05986 cob(I)alamin adenolsy 91.6 1.3 2.9E-05 40.8 9.2 124 44-181 23-157 (191)
394 PHA03368 DNA packaging termina 91.6 1.8 3.9E-05 47.2 11.4 123 44-181 255-390 (738)
395 TIGR02782 TrbB_P P-type conjug 91.6 0.38 8.3E-06 47.9 6.1 53 26-80 117-174 (299)
396 PF13307 Helicase_C_2: Helicas 91.6 0.51 1.1E-05 42.6 6.4 53 266-321 7-66 (167)
397 PRK12724 flagellar biosynthesi 91.5 2.6 5.7E-05 43.8 12.2 107 45-182 225-345 (432)
398 PRK06090 DNA polymerase III su 91.5 1.8 3.8E-05 43.5 10.7 43 25-67 3-49 (319)
399 PRK07993 DNA polymerase III su 91.5 0.88 1.9E-05 46.1 8.7 43 25-67 2-48 (334)
400 TIGR01425 SRP54_euk signal rec 91.5 2.1 4.6E-05 44.7 11.5 32 45-76 102-136 (429)
401 PRK06731 flhF flagellar biosyn 91.4 2.8 6.1E-05 41.0 11.8 108 44-182 76-197 (270)
402 PRK10865 protein disaggregatio 91.4 0.68 1.5E-05 52.9 8.6 93 45-169 600-694 (857)
403 KOG1133 Helicase of the DEAD s 91.1 0.32 7E-06 52.4 5.2 44 18-63 8-54 (821)
404 PRK13894 conjugal transfer ATP 91.0 0.43 9.2E-06 48.0 5.8 55 24-80 131-190 (319)
405 COG1066 Sms Predicted ATP-depe 91.0 2.1 4.6E-05 43.9 10.5 102 29-159 77-182 (456)
406 TIGR03346 chaperone_ClpB ATP-d 90.9 0.82 1.8E-05 52.4 8.7 93 45-169 597-691 (852)
407 TIGR03880 KaiC_arch_3 KaiC dom 90.5 0.79 1.7E-05 43.4 7.0 58 33-91 4-66 (224)
408 PF00931 NB-ARC: NB-ARC domain 90.5 2.1 4.6E-05 41.8 10.3 40 27-66 1-42 (287)
409 TIGR00767 rho transcription te 90.5 0.93 2E-05 46.7 7.7 27 41-67 166-192 (415)
410 PRK07399 DNA polymerase III su 90.4 3.3 7.2E-05 41.5 11.6 35 33-67 15-50 (314)
411 PRK12726 flagellar biosynthesi 90.1 2.9 6.3E-05 42.9 10.8 46 44-89 207-258 (407)
412 PRK05564 DNA polymerase III su 90.0 3.5 7.6E-05 41.2 11.5 40 28-67 10-50 (313)
413 PRK12727 flagellar biosynthesi 89.9 3.1 6.7E-05 44.5 11.1 32 44-75 351-387 (559)
414 TIGR03878 thermo_KaiC_2 KaiC d 89.8 1.3 2.8E-05 43.1 8.0 34 44-77 37-73 (259)
415 COG0467 RAD55 RecA-superfamily 89.8 0.86 1.9E-05 44.3 6.7 56 34-90 12-72 (260)
416 cd03115 SRP The signal recogni 89.8 1.8 3.8E-05 39.1 8.4 30 46-75 3-35 (173)
417 COG2812 DnaX DNA polymerase II 89.8 1 2.2E-05 48.0 7.5 37 144-180 118-157 (515)
418 cd00561 CobA_CobO_BtuR ATP:cor 89.8 1.1 2.4E-05 40.1 6.8 125 45-181 4-137 (159)
419 TIGR02236 recomb_radA DNA repa 89.8 1.9 4.1E-05 43.1 9.3 46 33-78 83-139 (310)
420 PF07728 AAA_5: AAA domain (dy 89.7 0.52 1.1E-05 40.8 4.6 34 45-78 1-34 (139)
421 TIGR02655 circ_KaiC circadian 89.7 0.88 1.9E-05 48.6 7.2 59 32-91 8-72 (484)
422 KOG0745 Putative ATP-dependent 89.6 0.38 8.3E-06 49.3 4.0 36 44-80 227-262 (564)
423 TIGR03345 VI_ClpV1 type VI sec 89.6 1.9 4.2E-05 49.3 10.2 38 30-67 192-232 (852)
424 TIGR02030 BchI-ChlI magnesium 89.6 1.6 3.5E-05 44.2 8.5 37 30-66 9-48 (337)
425 KOG0733 Nuclear AAA ATPase (VC 89.6 1 2.2E-05 48.3 7.2 36 42-77 222-257 (802)
426 PLN03186 DNA repair protein RA 89.5 1.9 4.1E-05 43.7 9.0 48 32-79 110-168 (342)
427 TIGR02688 conserved hypothetic 89.2 0.71 1.5E-05 47.8 5.7 20 44-63 210-229 (449)
428 TIGR00708 cobA cob(I)alamin ad 89.2 4.3 9.2E-05 36.9 10.1 46 136-181 88-139 (173)
429 TIGR01243 CDC48 AAA family ATP 89.1 1.5 3.2E-05 49.5 8.8 33 44-76 213-245 (733)
430 COG1702 PhoH Phosphate starvat 89.0 0.52 1.1E-05 47.0 4.5 39 147-185 245-283 (348)
431 COG4626 Phage terminase-like p 88.9 2.7 5.8E-05 44.8 9.8 68 21-88 57-138 (546)
432 PF06068 TIP49: TIP49 C-termin 88.9 0.62 1.4E-05 47.2 4.9 34 43-76 50-85 (398)
433 cd01122 GP4d_helicase GP4d_hel 88.8 3.3 7.2E-05 40.3 10.1 45 44-89 31-79 (271)
434 PRK05800 cobU adenosylcobinami 88.7 0.69 1.5E-05 42.0 4.7 47 45-91 3-49 (170)
435 COG3973 Superfamily I DNA and 88.6 0.75 1.6E-05 49.1 5.4 61 26-90 213-282 (747)
436 PRK10416 signal recognition pa 88.5 6.8 0.00015 39.3 12.2 32 44-75 115-149 (318)
437 COG3267 ExeA Type II secretory 88.5 7.1 0.00015 37.6 11.5 39 44-82 52-92 (269)
438 PTZ00035 Rad51 protein; Provis 88.4 2.4 5.1E-05 43.0 8.9 47 32-78 105-162 (337)
439 KOG0731 AAA+-type ATPase conta 88.3 0.44 9.6E-06 52.6 3.7 35 42-76 343-377 (774)
440 PRK09376 rho transcription ter 88.3 1.4 3.1E-05 45.2 7.1 35 32-66 158-192 (416)
441 KOG2340 Uncharacterized conser 88.2 0.88 1.9E-05 47.7 5.5 147 18-169 209-439 (698)
442 COG0324 MiaA tRNA delta(2)-iso 88.2 0.53 1.1E-05 46.7 3.9 28 45-72 5-32 (308)
443 PF05707 Zot: Zonular occluden 88.1 1.3 2.8E-05 40.9 6.4 17 47-63 4-20 (193)
444 cd01394 radB RadB. The archaea 88.1 1.5 3.2E-05 41.2 6.9 45 32-76 6-55 (218)
445 TIGR00602 rad24 checkpoint pro 88.1 4.1 8.9E-05 44.8 11.0 42 26-67 88-134 (637)
446 PF00158 Sigma54_activat: Sigm 88.1 2.7 5.8E-05 38.0 8.2 93 44-170 23-118 (168)
447 COG2804 PulE Type II secretory 87.9 1.1 2.3E-05 47.2 6.1 44 25-69 241-284 (500)
448 PRK05973 replicative DNA helic 87.7 1.3 2.9E-05 42.4 6.2 47 44-91 65-114 (237)
449 PRK10733 hflB ATP-dependent me 87.1 1.7 3.6E-05 48.2 7.4 34 44-77 186-219 (644)
450 COG1199 DinG Rad3-related DNA 86.9 1.9 4.2E-05 47.8 7.9 63 256-322 468-536 (654)
451 TIGR03881 KaiC_arch_4 KaiC dom 86.9 2.2 4.7E-05 40.5 7.2 58 32-90 7-69 (229)
452 PLN02165 adenylate isopentenyl 86.8 0.68 1.5E-05 46.5 3.8 31 39-69 39-69 (334)
453 COG1224 TIP49 DNA helicase TIP 86.8 1 2.2E-05 45.3 4.9 41 29-69 43-91 (450)
454 PRK09519 recA DNA recombinatio 86.8 3.5 7.6E-05 46.3 9.6 51 31-81 45-101 (790)
455 PF06309 Torsin: Torsin; Inte 86.8 1.9 4.1E-05 36.9 6.0 45 48-92 58-113 (127)
456 TIGR02974 phageshock_pspF psp 86.7 2.4 5.2E-05 42.8 7.8 93 44-170 23-118 (329)
457 PF13207 AAA_17: AAA domain; P 86.7 0.98 2.1E-05 37.9 4.3 26 46-71 2-27 (121)
458 cd01130 VirB11-like_ATPase Typ 86.4 1.2 2.5E-05 41.0 4.9 43 23-67 7-49 (186)
459 TIGR00064 ftsY signal recognit 86.4 12 0.00025 36.8 12.2 32 44-75 73-107 (272)
460 TIGR02858 spore_III_AA stage I 86.1 4.9 0.00011 39.4 9.3 35 33-67 101-135 (270)
461 PRK10867 signal recognition pa 85.8 2.2 4.8E-05 44.7 7.1 42 45-86 102-150 (433)
462 PRK14723 flhF flagellar biosyn 85.8 5.4 0.00012 44.7 10.4 21 45-65 187-207 (767)
463 PRK13851 type IV secretion sys 85.7 1.5 3.3E-05 44.5 5.7 37 44-80 163-201 (344)
464 cd01129 PulE-GspE PulE/GspE Th 85.6 1.5 3.2E-05 42.8 5.4 43 25-68 63-105 (264)
465 COG1223 Predicted ATPase (AAA+ 85.5 1.4 3.1E-05 42.3 5.0 40 42-82 150-189 (368)
466 COG0703 AroK Shikimate kinase 85.4 1 2.2E-05 40.8 3.8 29 44-72 3-31 (172)
467 PRK14721 flhF flagellar biosyn 85.4 6.7 0.00015 40.9 10.3 22 44-65 192-213 (420)
468 PRK05917 DNA polymerase III su 85.4 9.8 0.00021 37.6 11.0 37 31-67 6-43 (290)
469 KOG2543 Origin recognition com 85.2 1.9 4.2E-05 43.7 6.0 71 20-92 4-77 (438)
470 PF07015 VirC1: VirC1 protein; 84.9 4.2 9E-05 38.7 7.8 39 51-90 10-53 (231)
471 COG3972 Superfamily I DNA and 84.8 3.8 8.3E-05 42.9 8.0 46 47-92 180-230 (660)
472 PRK00771 signal recognition pa 84.6 3.4 7.5E-05 43.3 7.9 33 44-76 96-131 (437)
473 TIGR00959 ffh signal recogniti 84.5 4.2 9E-05 42.6 8.4 31 45-75 101-135 (428)
474 KOG0651 26S proteasome regulat 84.3 1.4 3E-05 43.5 4.4 41 42-83 165-205 (388)
475 PRK04841 transcriptional regul 84.2 15 0.00033 42.2 13.9 32 44-76 33-64 (903)
476 PRK10436 hypothetical protein; 84.2 1.8 3.9E-05 45.8 5.6 43 25-68 201-243 (462)
477 KOG0990 Replication factor C, 84.2 0.65 1.4E-05 45.9 2.1 37 144-180 130-169 (360)
478 TIGR00150 HI0065_YjeE ATPase, 84.1 0.97 2.1E-05 39.2 3.0 40 44-83 23-62 (133)
479 PRK15429 formate hydrogenlyase 84.1 6.9 0.00015 43.8 10.6 33 44-76 400-435 (686)
480 PF00154 RecA: recA bacterial 84.0 6.5 0.00014 39.5 9.2 58 31-88 38-101 (322)
481 cd00984 DnaB_C DnaB helicase C 84.0 1.6 3.6E-05 41.6 5.0 43 34-76 3-50 (242)
482 PF12775 AAA_7: P-loop contain 84.0 1.3 2.9E-05 43.4 4.4 34 34-69 26-59 (272)
483 PRK07246 bifunctional ATP-depe 84.0 6.5 0.00014 44.9 10.4 53 267-322 646-702 (820)
484 PRK08074 bifunctional ATP-depe 83.8 3.4 7.3E-05 47.9 8.1 65 255-321 740-811 (928)
485 PRK00091 miaA tRNA delta(2)-is 83.5 1.2 2.7E-05 44.4 3.9 25 45-69 6-30 (307)
486 TIGR02239 recomb_RAD51 DNA rep 83.5 4.9 0.00011 40.3 8.2 47 32-78 83-140 (316)
487 PF07724 AAA_2: AAA domain (Cd 83.3 1.5 3.2E-05 39.9 4.0 37 44-80 4-43 (171)
488 PRK14729 miaA tRNA delta(2)-is 83.2 1.2 2.7E-05 44.1 3.8 30 45-76 6-35 (300)
489 COG1618 Predicted nucleotide k 83.1 5.6 0.00012 35.6 7.3 126 45-185 7-141 (179)
490 PRK13900 type IV secretion sys 83.0 2.6 5.7E-05 42.6 6.1 37 44-80 161-199 (332)
491 TIGR00595 priA primosomal prot 83.0 4.2 9.2E-05 43.6 8.0 71 250-322 8-84 (505)
492 PRK09302 circadian clock prote 83.0 3.6 7.7E-05 44.3 7.5 61 30-91 16-82 (509)
493 COG3598 RepA RecA-family ATPas 82.9 8 0.00017 38.5 8.9 35 27-63 75-109 (402)
494 PRK06995 flhF flagellar biosyn 82.7 2.6 5.6E-05 44.8 6.0 22 45-66 258-279 (484)
495 COG1221 PspF Transcriptional r 82.7 2.9 6.3E-05 43.1 6.2 93 44-169 102-197 (403)
496 PRK09302 circadian clock prote 82.5 3.7 8E-05 44.2 7.4 60 31-91 259-323 (509)
497 TIGR01817 nifA Nif-specific re 82.5 5.9 0.00013 42.9 9.0 33 44-76 220-255 (534)
498 TIGR02903 spore_lon_C ATP-depe 82.3 6.8 0.00015 43.2 9.4 27 38-64 170-196 (615)
499 PF00437 T2SE: Type II/IV secr 82.1 1.4 3E-05 43.0 3.6 36 44-79 128-166 (270)
500 PRK05342 clpX ATP-dependent pr 82.0 1.5 3.3E-05 45.7 4.0 31 44-74 109-139 (412)
No 1
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.9e-124 Score=919.51 Aligned_cols=460 Identities=73% Similarity=1.163 Sum_probs=448.4
Q ss_pred CcccccCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHH
Q 010991 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (496)
Q Consensus 1 ~l~eydf~~d~~~~~~~~~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L 80 (496)
||+|||||||..||+++|+|||++.+||||++++++||+||++++|||++|||+|||++++++++++++++||+|++.+.
T Consensus 278 lLeEYDFRND~~npdl~idLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VS 357 (776)
T KOG1123|consen 278 LLEEYDFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVS 357 (776)
T ss_pred hhhhhccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch
Q 010991 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (496)
Q Consensus 81 ~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (496)
++||+.+|..|+++.+..+++|+++.++.++.+++|+|+||.|+++..+|+++++++|+++..++||++|+||+|.+++.
T Consensus 358 VeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~ 437 (776)
T KOG1123|consen 358 VEQWKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK 437 (776)
T ss_pred HHHHHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 161 ~~~~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
+|++++..+.+||+||||||++|+|+++.+|+++|||++|+++|++|.+.|+|++++|.+|||||+++||++|+ +.+.+
T Consensus 438 MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL-~~~t~ 516 (776)
T KOG1123|consen 438 MFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYL-RENTR 516 (776)
T ss_pred HHHHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHH-hhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 78999
Q ss_pred HHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcCCCeEEcCCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 241 ~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
++.++++|||+||++|++||++|+ .+|+|+|||++++..+..+|-.|+.++|+|.|++.||++|+++|+.+|.+|+||+
T Consensus 517 kr~lLyvMNP~KFraCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 517 KRMLLYVMNPNKFRACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred hhheeeecCcchhHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred ee----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHH
Q 010991 321 SK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 384 (496)
Q Consensus 321 s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~ 384 (496)
|+ |++|+||++|++||+||++|++++++ +++|+|||+|||+||.||+|+.+||+||+
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~d-------e~fnafFYSLVS~DTqEM~YStKRQ~FLi 668 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRND-------EEFNAFFYSLVSKDTQEMYYSTKRQQFLI 668 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCc-------cccceeeeeeeecchHHHHhhhhhhhhhh
Confidence 99 89999999999999999999999888 99999999999999999999999999999
Q ss_pred HcCccEEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccccccccCCchhhHhhhhhhhccCccccccCCCCceee
Q 010991 385 DQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464 (496)
Q Consensus 385 ~~g~~~~vi~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (496)
+|||+|+||++|++|++.+++.|.++++|.+|||.||.+++.++++|+.+++ + ...+.+.|+.|+|++||||++|+||
T Consensus 669 dQGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e~E~~~~~-~-~~~~~a~r~~gslssmsGgd~m~Y~ 746 (776)
T KOG1123|consen 669 DQGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAELEDLEDE-S-RASSKAVRSEGSLSSMSGGDDMAYM 746 (776)
T ss_pred hcCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhcccccccc-c-cccccceecccccccccCCCcceee
Confidence 9999999999999999999999999999999999999999999888776544 2 3356788999999999999999999
Q ss_pred EEecCcc
Q 010991 465 EYSTGQK 471 (496)
Q Consensus 465 ~~~~~~~ 471 (496)
|++.+++
T Consensus 747 ey~~~~~ 753 (776)
T KOG1123|consen 747 EYNSSRN 753 (776)
T ss_pred eeccccc
Confidence 9999999
No 2
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.2e-94 Score=767.38 Aligned_cols=475 Identities=71% Similarity=1.128 Sum_probs=433.3
Q ss_pred CcccccCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHH
Q 010991 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (496)
Q Consensus 1 ~l~eydf~~d~~~~~~~~~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L 80 (496)
+|+||||++|..+|+++|+|++.+.|||||++|+.+|+.++++++|+|++|||+|||++++++++..++++|||||+++|
T Consensus 231 ~~~~~~f~~~~~~~~~~i~L~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~L 310 (732)
T TIGR00603 231 LLEEYDFRNDTVNPDLNIDLKPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVS 310 (732)
T ss_pred hhhhhhhcccccCCCCCcccccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHH
Confidence 36899999999999999999999999999999999999887777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch
Q 010991 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (496)
Q Consensus 81 ~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (496)
++||.++|.+|+++++..|..++|+.++......+|+|+||+++.+..+|......+++.+....|++||+||||+++++
T Consensus 311 v~QW~~ef~~~~~l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~ 390 (732)
T TIGR00603 311 VEQWKQQFKMWSTIDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA 390 (732)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH
Confidence 99999999999888888899999987765555678999999999988778777778888998889999999999999999
Q ss_pred HHHHHHHhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 161 ~~~~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
.|++++..+.++++|||||||.|+|+.+.++++++||++|+.+|.++++.|+|+++.|.++||+|+++++.+|+ .....
T Consensus 391 ~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl-~~~~~ 469 (732)
T TIGR00603 391 MFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYL-RENSR 469 (732)
T ss_pred HHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHH-Hhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55566
Q ss_pred HHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcCCCeEEcCCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 241 ~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
.+..++.+||+|+.+|++|+.+|+ .+++++||||+++.+++.++..|+++++||+|++.+|.+++++|++++.+++||+
T Consensus 470 ~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 470 KRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 677888999999999999999997 7899999999999999999999999999999999999999999998668899999
Q ss_pred ee---------------c-cCCCCChhHHHHHccCcCcCCCCccccccCCCC-ceeEEEEEEEcCCChHHHHHHHHHHHH
Q 010991 321 SK---------------I-SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKE-EYNAFFYSLVSTDTQEMFYSTKRQQFL 383 (496)
Q Consensus 321 s~---------------i-~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~-~~~~~vy~lvs~~t~e~~~~~~r~~~l 383 (496)
|+ + .++++|+++|+||+||++|+++++. . +++++||+||++||.||+|+++||+||
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~-------~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD-------AEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc-------cccccceEEEEecCCchHHHHHHHHHHHH
Confidence 98 2 3456899999999999999997654 3 678999999999999999999999999
Q ss_pred HHcCccEEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccccccccCCchhhHh----------hhhhhhccCccc
Q 010991 384 IDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMS 453 (496)
Q Consensus 384 ~~~g~~~~vi~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 453 (496)
.+|||+|+||++++++.+.+++.|.++++|.+||+++|.+++.++++|..++|.+.+. .+.++|++|+|+
T Consensus 622 ~~qGY~~~vi~~~~~~~~~~~l~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (732)
T TIGR00603 622 VDQGYSFKVITHLPGMDNESNLAYSSKEEQLELLQKVLLAGDLDAELEVLEGEFGSRALGASRSMSSASGKAVRRGGSLS 701 (732)
T ss_pred HHCCCeeEEEecCcccccccccccCCHHHHHHHHHHHHhCcccccchhccccchhccccccccccccccccceeccccHh
Confidence 9999999999999999988899999999999999999999988887665554423332 234789999999
Q ss_pred cccCCCCceeeEEecCccccCCCCCCCCCCCCccCchhhc
Q 010991 454 AMSGAQGMVYMEYSTGQKKLGLGQKGKPKDPSKRHYLFKR 493 (496)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (496)
++|||++|+|+||+++++ +.++. ..||||||
T Consensus 702 ~~~g~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~ 732 (732)
T TIGR00603 702 SLSGGDDMAYMEYRKPAI-------KKSKK--EVHPLFKK 732 (732)
T ss_pred hhcCCCCceeEEeecccc-------ccccc--ccCcccCC
Confidence 999999999999999988 55431 36999986
No 3
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.8e-50 Score=416.91 Aligned_cols=367 Identities=35% Similarity=0.528 Sum_probs=309.4
Q ss_pred ccCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHH
Q 010991 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83 (496)
Q Consensus 5 ydf~~d~~~~~~~~~l~~~~~lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Q 83 (496)
+++..+...+.... ....+.|||||++|+.+|+++.. .++|++++|||+|||++++.++..++.++|||||+.+|+.|
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Q 95 (442)
T COG1061 17 ADYVLDEGLPLKLI-VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQ 95 (442)
T ss_pred HHHhhhcCCccccc-cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHH
Confidence 34455544444332 55678999999999999998522 36999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH
Q 010991 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163 (496)
Q Consensus 84 w~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~ 163 (496)
|++.+.+++..+ ..++.++|+.++. .. ..|.|+|++++.... .+..+..++|++||+|||||++++.|+
T Consensus 96 w~~~~~~~~~~~-~~~g~~~~~~~~~-~~-~~i~vat~qtl~~~~--------~l~~~~~~~~~liI~DE~Hh~~a~~~~ 164 (442)
T COG1061 96 WAEALKKFLLLN-DEIGIYGGGEKEL-EP-AKVTVATVQTLARRQ--------LLDEFLGNEFGLIIFDEVHHLPAPSYR 164 (442)
T ss_pred HHHHHHHhcCCc-cccceecCceecc-CC-CcEEEEEhHHHhhhh--------hhhhhcccccCEEEEEccccCCcHHHH
Confidence 999999886544 4678888887763 22 579999999997541 345555568999999999999999999
Q ss_pred HHHHhccCcc-EEEEeecCCCCc-cchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHH
Q 010991 164 KVISLTKSHC-KLGLTATLVRED-ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (496)
Q Consensus 164 ~~l~~l~~~~-~L~LTATp~r~d-~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~ 241 (496)
.++..+.+.+ +|||||||.|.| +.+..++.++||.+|+.++.+++..|+++|+.+..++++++.+....|. ......
T Consensus 165 ~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~-~~~~~~ 243 (442)
T COG1061 165 RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYA-KESARF 243 (442)
T ss_pred HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhh-hhhhhh
Confidence 9999999998 999999999999 6788999999999999999999999999999999999999888877766 222221
Q ss_pred H---------------HHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcCCC----eEEcCCCHHHH
Q 010991 242 K---------------QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKP----MIYGATSHVER 302 (496)
Q Consensus 242 ~---------------~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~~~----~i~G~~~~~eR 302 (496)
. ..+...++.|...+..++..+. ++.+++|||.++.+++.++..+..+ .++|.++..||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR 321 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEER 321 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHH
Confidence 1 3445556678888999988774 6889999999999999999999977 99999999999
Q ss_pred HHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEc
Q 010991 303 TKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 367 (496)
Q Consensus 303 ~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs 367 (496)
..++++|+.+ .+++|+.+. +.++++|+.+|+||+||++|+.+++ +...+++|.++.
T Consensus 322 ~~il~~fr~g-~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k--------~~~~~~~~~~~~ 392 (442)
T COG1061 322 EAILERFRTG-GIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGK--------EDTLALDYSLVP 392 (442)
T ss_pred HHHHHHHHcC-CCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCC--------CceEEEEEEeec
Confidence 9999999998 699999888 5678999999999999999975433 344699999999
Q ss_pred CCChHHHHHHHHHHHHHHcCccEEEEeC
Q 010991 368 TDTQEMFYSTKRQQFLIDQGYSFKVITS 395 (496)
Q Consensus 368 ~~t~e~~~~~~r~~~l~~~g~~~~vi~~ 395 (496)
.++.++.++.++..+...+|+...+...
T Consensus 393 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 420 (442)
T COG1061 393 DDLGEEDIARRRRLFLIRKGYTYRLLTA 420 (442)
T ss_pred CcccccchhhhhhhhHHhccchhhhhhc
Confidence 9999999999888888888887655433
No 4
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.4e-45 Score=377.05 Aligned_cols=333 Identities=21% Similarity=0.297 Sum_probs=268.8
Q ss_pred CCCCcHHHHHHHHHHH---hcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 23 HAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
++.|||||.++++|+. .++ -+||++++||+|||+++|+++..+ .+|.||+||.++| .+|..||++|+
T Consensus 165 ~g~lr~YQveGlnWLi~l~eng--ingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~- 240 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENG--INGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFT- 240 (971)
T ss_pred CCccchhhhccHHHHHHHHhcC--cccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhC-
Confidence 4789999999999764 344 489999999999999999988654 5699999999985 77999999995
Q ss_pred CCCCcEEEEcCCcccc--------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHH
Q 010991 94 IQDDQICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFR 163 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~~--------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~ 163 (496)
|...+.+|.|+..++ ..+..+|+||||++.... ...|....|.++||||||+++|. ...
T Consensus 241 -P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d----------k~~lk~~~W~ylvIDEaHRiKN~~s~L~ 309 (971)
T KOG0385|consen 241 -PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD----------KSFLKKFNWRYLVIDEAHRIKNEKSKLS 309 (971)
T ss_pred -CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh----------HHHHhcCCceEEEechhhhhcchhhHHH
Confidence 788899999997643 246789999999999755 36777789999999999999987 456
Q ss_pred HHHHhccCccEEEEeecCCCCccc-----------------------------------hhhhhhhhCccccccCHHHHH
Q 010991 164 KVISLTKSHCKLGLTATLVREDER-----------------------------------ITDLNFLIGPKLYEANWLDLV 208 (496)
Q Consensus 164 ~~l~~l~~~~~L~LTATp~r~d~~-----------------------------------~~~l~~l~gp~~~~~~~~~l~ 208 (496)
+.+..+....+|+|||||+++.-. +..|...+.|++.+....++.
T Consensus 310 ~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe 389 (971)
T KOG0385|consen 310 KILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE 389 (971)
T ss_pred HHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh
Confidence 789999999999999999965432 122334445555555555553
Q ss_pred hCCCCCcceEEEEEcCCCHHHHHHHHhh---h-------c----HHHHHHh---------------------------hh
Q 010991 209 KGGFIANVQCAEVWCPMTKEFFSEYLKK---E-------N----SKKKQAL---------------------------YV 247 (496)
Q Consensus 209 ~~g~l~~~~~~~v~~~~~~~~~~~yl~~---~-------~----~~~~~~l---------------------------~~ 247 (496)
.-++|.....++++|+..+...|-.. . . .+-..++ .+
T Consensus 390 --~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv 467 (971)
T KOG0385|consen 390 --KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 467 (971)
T ss_pred --hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHH
Confidence 33788888899999998776655321 1 1 0111111 25
Q ss_pred hCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCC-CccEEEEe
Q 010991 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR-DLNTIFLS 321 (496)
Q Consensus 248 ~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~-~~~vlv~s 321 (496)
.|++|+.+++.|+..+. ..|+|||||++++.+++.|.+++. +..|+|+++.+||...++.|+..+ +..++++|
T Consensus 468 ~nSGKm~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLK-EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred hcCcceehHHHHHHHHH-hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 66889999999998887 899999999999999999999873 566999999999999999999864 57777788
Q ss_pred e----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHH
Q 010991 322 K----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 384 (496)
Q Consensus 322 ~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~ 384 (496)
+ +++..|||+..+|+++|+||+| |.+.|.||+||+.+|+|+.+..+..+.|.
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIG-----------Q~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIG-----------QKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhC-----------CcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 8 6788999999999999999999 66789999999999999998876655553
No 5
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.7e-42 Score=362.11 Aligned_cols=343 Identities=16% Similarity=0.213 Sum_probs=262.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---c-CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~-~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.+.|||||.+|+..++.+. ++++++|||+|||+++..++.. . ..++|||||+++|+.||.++|.+|...+...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~---~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNN---RRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHhcC---ceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 4789999999999998765 7899999999999987666432 2 3389999999999999999999987666545
Q ss_pred EEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc-cCccEEEE
Q 010991 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGL 177 (496)
Q Consensus 99 v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l-~~~~~L~L 177 (496)
+..+.++... ....+|+|+|++++.... ...+ .++++||+||||++.+..+..++..+ ++.+++||
T Consensus 189 ~~~i~~g~~~--~~~~~I~VaT~qsl~~~~---------~~~~--~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGL 255 (501)
T PHA02558 189 MHKIYSGTAK--DTDAPIVVSTWQSAVKQP---------KEWF--DQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGL 255 (501)
T ss_pred eeEEecCccc--CCCCCEEEeeHHHHhhch---------hhhc--cccCEEEEEchhcccchhHHHHHHhhhccceEEEE
Confidence 5444343332 134789999999986431 1223 58999999999999999999999888 46789999
Q ss_pred eecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHH
Q 010991 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257 (496)
Q Consensus 178 TATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~ 257 (496)
||||.+.+.....+..++||..+..++.++++.|+++++.+..+.+..+......+. .............++.+...+.
T Consensus 256 TATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~Rn~~I~ 334 (501)
T PHA02558 256 TGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK-GEDYQEEIKYITSHTKRNKWIA 334 (501)
T ss_pred eccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhc-ccchHHHHHHHhccHHHHHHHH
Confidence 999976665555667799999999999999999999999888777765544322110 0000011111223344555555
Q ss_pred HHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----------
Q 010991 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---------- 322 (496)
Q Consensus 258 ~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------- 322 (496)
.++.... ..+.+++|||.++++++.+++.|+ +.++||++++++|..+++.|+++ +..+||+|.
T Consensus 335 ~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 335 NLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccc
Confidence 6655444 467899999999999999999994 67899999999999999999987 778888873
Q ss_pred ------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCCh----------------HHHHHHHHH
Q 010991 323 ------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ----------------EMFYSTKRQ 380 (496)
Q Consensus 323 ------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~----------------e~~~~~~r~ 380 (496)
+..+..|...++||+||++|.+++|. .+.+|++++.-.. ....+.+|.
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~----------~~~i~D~vD~~~~~~~~~~~~~~~~~~~~~~~h~~~r~ 482 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS----------IATVWDIIDDLSVKPKSANAKKKYVHLNYALKHALERI 482 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCCc----------eEEEEEeecccccccccccccchhhhhhHHHHHHHHHH
Confidence 44677788999999999999997544 8999999985432 245567888
Q ss_pred HHHHHcCccEEEEe
Q 010991 381 QFLIDQGYSFKVIT 394 (496)
Q Consensus 381 ~~l~~~g~~~~vi~ 394 (496)
+.+.++.+.+.++.
T Consensus 483 ~~y~~~~~~~~~~~ 496 (501)
T PHA02558 483 KIYNEEKFNYEIKK 496 (501)
T ss_pred HHHhhccCceEEEE
Confidence 89999888887763
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3e-42 Score=381.81 Aligned_cols=334 Identities=18% Similarity=0.230 Sum_probs=253.9
Q ss_pred CCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 24 AQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
.+|||||.++++|++.. ..+.+|||+++||+|||+++++++..+ .+|+|||||.+ ++.||.++|.+|+ |.
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw~--p~ 244 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRFC--PV 244 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHHC--CC
Confidence 58999999999987641 112589999999999999999887643 35899999987 5799999999996 55
Q ss_pred CcEEEEcCCcccc--------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHHHHH
Q 010991 97 DQICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVI 166 (496)
Q Consensus 97 ~~v~~~~g~~~~~--------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l 166 (496)
..+..++|..... ..+..+|+||||+++... ...|....|++||+||||++++. ...+++
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e----------~~~L~k~~W~~VIvDEAHrIKN~~Sklskal 314 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE----------KTALKRFSWRYIIIDEAHRIKNENSLLSKTM 314 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH----------HHHhccCCCCEEEEcCccccCCHHHHHHHHH
Confidence 6788888875421 135678999999998643 35566679999999999999986 355677
Q ss_pred HhccCccEEEEeecCCCCccch--h---------------------------------hhhhhhCccccccCHHHHHhCC
Q 010991 167 SLTKSHCKLGLTATLVREDERI--T---------------------------------DLNFLIGPKLYEANWLDLVKGG 211 (496)
Q Consensus 167 ~~l~~~~~L~LTATp~r~d~~~--~---------------------------------~l~~l~gp~~~~~~~~~l~~~g 211 (496)
..+.+.++|+|||||+.+.-.. . .|..++.|.+++....++ ..
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV--~~ 392 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EK 392 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHH--hh
Confidence 8888999999999999654321 1 122233344444444444 23
Q ss_pred CCCcceEEEEEcCCCHHHHHHHHhhhc---------HHHHHHh------------------------------hhhCCCc
Q 010991 212 FIANVQCAEVWCPMTKEFFSEYLKKEN---------SKKKQAL------------------------------YVMNPNK 252 (496)
Q Consensus 212 ~l~~~~~~~v~~~~~~~~~~~yl~~~~---------~~~~~~l------------------------------~~~~~~K 252 (496)
.+++.....++|+|++.+...|..... .....++ .+.+++|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 577778888999999877555532110 0000000 1223578
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCC-CccEEEEee----
Q 010991 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR-DLNTIFLSK---- 322 (496)
Q Consensus 253 ~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~-~~~vlv~s~---- 322 (496)
+.++..|+..+. ..|+|+||||+++..++.|.+.|. +..|||+++..+|..+++.|+..+ ...++++|+
T Consensus 473 l~lLdkLL~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 473 MVLLDKLLPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 999999998877 789999999999999999999883 567999999999999999998642 344666676
Q ss_pred ------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHH
Q 010991 323 ------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 384 (496)
Q Consensus 323 ------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~ 384 (496)
+++.+|||..+.|++||+||+| |.+.|.||+|++.+|+|+.+..+..+.+.
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIG-----------Qkk~V~VyRLIt~gTIEEkIlera~~Kl~ 614 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIG-----------QKKEVQVFRFCTEYTIEEKVIERAYKKLA 614 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcC-----------CCceEEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 6788999999999999999999 66689999999999999988866554443
No 7
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=7.3e-42 Score=367.37 Aligned_cols=399 Identities=17% Similarity=0.219 Sum_probs=289.8
Q ss_pred CCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHh------cCCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR------IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~------~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..+||+||.++++|++.. -.+.+||++++||+|||++.++++.. +.+|+|||||.++ +..|.++|..|+
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst-~~~W~~ef~~w~--- 443 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLST-ITAWEREFETWT--- 443 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhh-hHHHHHHHHHHh---
Confidence 468999999999986532 12249999999999999999998865 3679999999997 577999999997
Q ss_pred CCcEEEEcCCcccc---------ccC-----CCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-
Q 010991 96 DDQICRFTSDSKER---------FRG-----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH- 160 (496)
Q Consensus 96 ~~~v~~~~g~~~~~---------~~~-----~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~- 160 (496)
..++.+|.|+...+ ... ..++++|||+++..+ ...|...+|.++++||||+++|.
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----------k~~L~~i~w~~~~vDeahrLkN~~ 513 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----------KAELSKIPWRYLLVDEAHRLKNDE 513 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----------HhhhccCCcceeeecHHhhcCchH
Confidence 45788888885532 112 478999999999866 46777889999999999999976
Q ss_pred -HHHHHHHhccCccEEEEeecCCCCccch-------------------------------hhhhhhhCccccccCHHHHH
Q 010991 161 -MFRKVISLTKSHCKLGLTATLVREDERI-------------------------------TDLNFLIGPKLYEANWLDLV 208 (496)
Q Consensus 161 -~~~~~l~~l~~~~~L~LTATp~r~d~~~-------------------------------~~l~~l~gp~~~~~~~~~l~ 208 (496)
..-..+..+...++|++||||.++.-.. ..|...+.|.+.+.-..++
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdv- 592 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDV- 592 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhh-
Confidence 3334588889999999999999754332 1222333444444444444
Q ss_pred hCCCCCcceEEEEEcCCCHHHH---HHHHhhhcH-----------------------------------------H----
Q 010991 209 KGGFIANVQCAEVWCPMTKEFF---SEYLKKENS-----------------------------------------K---- 240 (496)
Q Consensus 209 ~~g~l~~~~~~~v~~~~~~~~~---~~yl~~~~~-----------------------------------------~---- 240 (496)
..-+++.....+.+.|+.-+. +..|.+.-. .
T Consensus 593 -ekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~ 671 (1373)
T KOG0384|consen 593 -EKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMR 671 (1373)
T ss_pred -ccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcch
Confidence 456666666667777776543 332321100 0
Q ss_pred -HHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcC-C
Q 010991 241 -KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS-R 313 (496)
Q Consensus 241 -~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~-~ 313 (496)
..-...+++++|+-+++.||..+. ..|+|||||++++.+++.|+++|. .-.|+|+++.+-|...++.|+.. +
T Consensus 672 d~~L~~lI~sSGKlVLLDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~S 750 (1373)
T KOG0384|consen 672 DEALQALIQSSGKLVLLDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDS 750 (1373)
T ss_pred HHHHHHHHHhcCcEEeHHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCC
Confidence 011123567889999999999888 889999999999999999999994 44599999999999999999863 2
Q ss_pred CccEEEEee----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHH
Q 010991 314 DLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYST 377 (496)
Q Consensus 314 ~~~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~ 377 (496)
+--|+++|+ |++..|||+..+|++.|+||+| |.+.|-||+||+++|+|+.+..
T Consensus 751 ddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIG-----------Qkk~VnVYRLVTk~TvEeEilE 819 (1373)
T KOG0384|consen 751 DDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG-----------QKKHVNVYRLVTKNTVEEEILE 819 (1373)
T ss_pred CceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhc-----------ccceEEEEEEecCCchHHHHHH
Confidence 445666666 8999999999999999999999 6678999999999999999987
Q ss_pred HHHHHHHHcCccEEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC---CccccccccCCchhhHhhhhhhhccCcccc
Q 010991 378 KRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAG---DDAVGLEQLDEDADDIALHKARRIAGSMSA 454 (496)
Q Consensus 378 ~r~~~l~~~g~~~~vi~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (496)
+....|+ +.+-||+.+..-....+-.-.+++|...+|..-.... +++++.+..++|.|.| ..|++.....
T Consensus 820 RAk~Kmv---LD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeI----L~rae~~~t~ 892 (1373)
T KOG0384|consen 820 RAKLKMV---LDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEI----LERAETRITE 892 (1373)
T ss_pred HHHHHhh---hHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHH----Hhhccccccc
Confidence 6655553 3355676655412223344456788888887643332 1222233445677776 4555555544
Q ss_pred cc
Q 010991 455 MS 456 (496)
Q Consensus 455 ~~ 456 (496)
-+
T Consensus 893 ~~ 894 (1373)
T KOG0384|consen 893 ES 894 (1373)
T ss_pred cc
Confidence 44
No 8
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-41 Score=352.14 Aligned_cols=346 Identities=18% Similarity=0.252 Sum_probs=266.5
Q ss_pred CCCccccCCCCCCcHHHHHHHHHHH-hcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHH
Q 010991 14 PDLNMELKPHAQPRPYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQ 87 (496)
Q Consensus 14 ~~~~~~l~~~~~lr~yQ~~al~~~~-~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e 87 (496)
...+--+.+.++|.|||.-+++|+. -....-+|||+++||+|||+++|++++.+ .+|.|||||+++ +++|.+|
T Consensus 388 ~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsST-leNWlrE 466 (941)
T KOG0389|consen 388 TEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSST-LENWLRE 466 (941)
T ss_pred ccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchh-HHHHHHH
Confidence 3344557788999999999999742 22233589999999999999999988764 469999999998 5889999
Q ss_pred HHHhhCCCCCcEEEEcCCccccc---------cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 88 FKLWSTIQDDQICRFTSDSKERF---------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 88 ~~~~~~~~~~~v~~~~g~~~~~~---------~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
|.+|| |..+|-.|+|...++. ....+|++|||+..... ..-..+|+..+|+++|.||+|.++
T Consensus 467 f~kwC--Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~-------kdDRsflk~~~~n~viyDEgHmLK 537 (941)
T KOG0389|consen 467 FAKWC--PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASS-------KDDRSFLKNQKFNYVIYDEGHMLK 537 (941)
T ss_pred HHHhC--CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCC-------hHHHHHHHhccccEEEecchhhhh
Confidence 99995 7888999999866431 24789999999988743 233567888999999999999999
Q ss_pred ch---HHHHHHHhccCccEEEEeecCCCCccchh-hhhhh----------------------------------------
Q 010991 159 AH---MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFL---------------------------------------- 194 (496)
Q Consensus 159 ~~---~~~~~l~~l~~~~~L~LTATp~r~d~~~~-~l~~l---------------------------------------- 194 (496)
+. .|+.++ .+++..||+|||||++++-+.- .|..+
T Consensus 538 N~~SeRy~~LM-~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrA 616 (941)
T KOG0389|consen 538 NRTSERYKHLM-SINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRA 616 (941)
T ss_pred ccchHHHHHhc-cccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHH
Confidence 76 566444 4789999999999997654421 12222
Q ss_pred ---hCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH-----------------------HH-------
Q 010991 195 ---IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-----------------------KK------- 241 (496)
Q Consensus 195 ---~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~-----------------------~~------- 241 (496)
++|.+.+....++ -+.|+|..-...+|+|+..+...|.+-... ++
T Consensus 617 K~im~PFILRR~K~qV--L~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL 694 (941)
T KOG0389|consen 617 KTIMKPFILRRLKSQV--LKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLL 694 (941)
T ss_pred HHhhhHHHHHHHHHHH--HHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhH
Confidence 3344444333333 245667777777899988765544321000 00
Q ss_pred --------------HHHh-------------------------------------------hhhCCCcHHHHHHHHHHhh
Q 010991 242 --------------KQAL-------------------------------------------YVMNPNKFRACEFLIRFHE 264 (496)
Q Consensus 242 --------------~~~l-------------------------------------------~~~~~~K~~~l~~ll~~~~ 264 (496)
+.++ .+|.++|+..|..|+....
T Consensus 695 ~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k 774 (941)
T KOG0389|consen 695 FRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIK 774 (941)
T ss_pred HHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHh
Confidence 0000 1667889999999998887
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----------------c
Q 010991 265 QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------------I 323 (496)
Q Consensus 265 ~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------------i 323 (496)
..|+||+||++++.+++.|...|+ +..++|+|+..+|+.+++.|+.+..+.|+++|+ +
T Consensus 775 -~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 775 -KKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred -hcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 789999999999999999999885 456899999999999999999888999999999 4
Q ss_pred cCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHH
Q 010991 324 SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 384 (496)
Q Consensus 324 ~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~ 384 (496)
.+-..||-...|+.+|+||.| |.+.|.||+||+++|+||.+.+-.+..|.
T Consensus 854 hD~dFNP~dD~QAEDRcHRvG-----------QtkpVtV~rLItk~TIEE~I~~lA~~KL~ 903 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHRVG-----------QTKPVTVYRLITKSTIEEGILRLAKTKLA 903 (941)
T ss_pred eecCCCCcccchhHHHHHhhC-----------CcceeEEEEEEecCcHHHHHHHHHHHhhh
Confidence 455568888999999999999 67789999999999999988765555553
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-41 Score=351.10 Aligned_cols=335 Identities=19% Similarity=0.283 Sum_probs=257.7
Q ss_pred CCCcHHHHHHHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
..|+|||+++++|+++-. +..+|||.++||+|||++.+++++.+ .+|+|||||.+ ++.||.+||..| .|+
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w--~p~ 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTW--WPP 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHH-HHHHHHHHHHHh--Ccc
Confidence 369999999999987632 33589999999999999988887643 36999999976 799999999999 467
Q ss_pred CcEEEEcCCccc-------------c-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 97 DQICRFTSDSKE-------------R-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 97 ~~v~~~~g~~~~-------------~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
..|.++++.... . .....+|+||||+.+.... +.+....|+++|+||+|++.
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~----------d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG----------DDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC----------cccccccccEEEecCccccc
Confidence 788887765431 1 1244679999999886542 34556899999999999999
Q ss_pred ch--HHHHHHHhccCccEEEEeecCCCCccchh-----------------------------------------------
Q 010991 159 AH--MFRKVISLTKSHCKLGLTATLVREDERIT----------------------------------------------- 189 (496)
Q Consensus 159 ~~--~~~~~l~~l~~~~~L~LTATp~r~d~~~~----------------------------------------------- 189 (496)
|+ .....+..++..+||+|||||+++.-..-
T Consensus 351 Npns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 351 NPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred CCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 87 45556777899999999999996543211
Q ss_pred hhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHh------------------------
Q 010991 190 DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL------------------------ 245 (496)
Q Consensus 190 ~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l------------------------ 245 (496)
.|..++.|.+.+....+... -.++......++|.++..+.+.|.+-..+..-..+
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 12233444444444444431 26777788899999999987766532221110000
Q ss_pred ---------------hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------CCeEEcCCCHHHHHH
Q 010991 246 ---------------YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTK 304 (496)
Q Consensus 246 ---------------~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~ 304 (496)
....++|++++..|+..-. ..|+++|+|++++.+++.|...|. +..++|.|+...|..
T Consensus 510 ~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~-kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~ 588 (923)
T KOG0387|consen 510 DRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK-KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQK 588 (923)
T ss_pred cCcccccccCCCcCCChhhcchHHHHHHHHHHHh-hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhH
Confidence 0122468999999985433 678999999999999999999885 455899999999999
Q ss_pred HHHHHhcCCCccEEEEee----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcC
Q 010991 305 ILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 305 il~~F~~~~~~~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~ 368 (496)
++++|++++.+.|+++|+ |+++.|||....|+..|+.|+| |.+.|.||+|++.
T Consensus 589 lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiG-----------QkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 589 LVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIG-----------QKKDVVVYRLMTA 657 (923)
T ss_pred HHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhc-----------CccceEEEEEecC
Confidence 999999998999999999 8899999999999999999999 5667999999999
Q ss_pred CChHHHHHHHH--HHHHH
Q 010991 369 DTQEMFYSTKR--QQFLI 384 (496)
Q Consensus 369 ~t~e~~~~~~r--~~~l~ 384 (496)
+|+||.++.++ +++|.
T Consensus 658 gTIEEkiY~rQI~Kq~Lt 675 (923)
T KOG0387|consen 658 GTIEEKIYHRQIFKQFLT 675 (923)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 99999777554 44443
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=7e-41 Score=358.31 Aligned_cols=336 Identities=19% Similarity=0.253 Sum_probs=257.0
Q ss_pred CccccCCCCCCcHHHHHHHHHH-HhcCCCcceEEEeCCCCChHHHHHHHHHh----c--------CCcEEEEEeChHHHH
Q 010991 16 LNMELKPHAQPRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKSLVGVSAACR----I--------KKSCLCLATNAVSVD 82 (496)
Q Consensus 16 ~~~~l~~~~~lr~yQ~~al~~~-~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~--------~~~~LIl~P~~~L~~ 82 (496)
..|...-+.+||.||+++++|+ |-+...-+||++++||+|||++++.+++. . ..|.|||||++ |+.
T Consensus 966 y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtG 1044 (1549)
T KOG0392|consen 966 YKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTG 1044 (1549)
T ss_pred cccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhh
Confidence 3444445678999999999964 33445578999999999999999988753 1 23799999976 999
Q ss_pred HHHHHHHHhhCCCCCcEEEEcCCccccc--c---CCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCccc
Q 010991 83 QWAFQFKLWSTIQDDQICRFTSDSKERF--R---GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (496)
Q Consensus 83 Qw~~e~~~~~~~~~~~v~~~~g~~~~~~--~---~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~ 157 (496)
.|..|+.+|+ |-.+|..|.|...++. + ..++|+||+|+.++++ .+.+.+.+|-++|+||.|.+
T Consensus 1045 HW~~E~~kf~--pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD----------~d~l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1045 HWKSEVKKFF--PFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRND----------VDYLIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred HHHHHHHHhc--chhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHH----------HHHHHhcccceEEecCccee
Confidence 9999999996 4467777887755432 1 3479999999999876 56777789999999999999
Q ss_pred Cch--HHHHHHHhccCccEEEEeecCCCCccchh-hhhhh-----hCc--------------------------------
Q 010991 158 PAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFL-----IGP-------------------------------- 197 (496)
Q Consensus 158 ~~~--~~~~~l~~l~~~~~L~LTATp~r~d~~~~-~l~~l-----~gp-------------------------------- 197 (496)
+|. ...+.++++.+.+||.|||||+++.-..- .|+.+ +|+
T Consensus 1113 kN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAl 1192 (1549)
T KOG0392|consen 1113 KNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLAL 1192 (1549)
T ss_pred cchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHH
Confidence 986 46678899999999999999997764422 12222 121
Q ss_pred ---------cccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHH---hhh---------------cHHH----HHHh-
Q 010991 198 ---------KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL---KKE---------------NSKK----KQAL- 245 (496)
Q Consensus 198 ---------~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl---~~~---------------~~~~----~~~l- 245 (496)
.+.++-..|+ -..++|..+.-.+|.+++.+.+.|. ++. ...+ +++.
T Consensus 1193 eaLHKqVLPF~LRRlKedV--L~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqY 1270 (1549)
T KOG0392|consen 1193 EALHKQVLPFLLRRLKEDV--LKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQY 1270 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHH
Confidence 1111112222 2345677777888999987655443 220 0000 0011
Q ss_pred ----------------------------------hhhCCCcHHHHHHHHHHhhhc-------------CCCeEEEEeccH
Q 010991 246 ----------------------------------YVMNPNKFRACEFLIRFHEQQ-------------RGDKIIVFADNL 278 (496)
Q Consensus 246 ----------------------------------~~~~~~K~~~l~~ll~~~~~~-------------~g~kiIVF~~~~ 278 (496)
-+.+..|+.++..|+..+.-. .++|+||||+.+
T Consensus 1271 lrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK 1350 (1549)
T KOG0392|consen 1271 LRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLK 1350 (1549)
T ss_pred HHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHH
Confidence 034466889999999765322 568999999999
Q ss_pred HHHHHHHHHcC--------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----------------ccCCCCChhHHH
Q 010991 279 FALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEA 334 (496)
Q Consensus 279 ~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------------i~~~~~s~~~~~ 334 (496)
.+++.+.+-|- +..++|+.++.+|.+++++|+++|.++|+++|+ ++.|.|||....
T Consensus 1351 ~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDL 1430 (1549)
T KOG0392|consen 1351 SMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDL 1430 (1549)
T ss_pred HHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhH
Confidence 99999999873 336899999999999999999999999999999 678999999999
Q ss_pred HHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHH
Q 010991 335 QRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYST 377 (496)
Q Consensus 335 Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~ 377 (496)
|+++|+||+| |+++|-||+||+++|.||++..
T Consensus 1431 QAMDRAHRIG-----------QKrvVNVyRlItrGTLEEKVMg 1462 (1549)
T KOG0392|consen 1431 QAMDRAHRIG-----------QKRVVNVYRLITRGTLEEKVMG 1462 (1549)
T ss_pred HHHHHHHhhc-----------CceeeeeeeehhcccHHHHHhh
Confidence 9999999999 7889999999999999998864
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.3e-41 Score=354.13 Aligned_cols=371 Identities=18% Similarity=0.225 Sum_probs=283.7
Q ss_pred CCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..+|++||.+++.||.+- +..-+||++++||+|||+++|++++.+ .+|.|||||+++|.+ |..+|.+|. |
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWa--P 468 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWA--P 468 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccc--c
Confidence 568999999999988652 123699999999999999999998754 579999999999755 999999994 6
Q ss_pred CCcEEEEcCCcccc-------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHHHHH
Q 010991 96 DDQICRFTSDSKER-------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVI 166 (496)
Q Consensus 96 ~~~v~~~~g~~~~~-------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l 166 (496)
......|.|....+ ..+.++|++|||+.+... ...|.+.+|.++||||.|+|++. .....+
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd----------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L 538 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD----------KALLSKISWKYMIIDEGHRMKNAICKLTDTL 538 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC----------HHHHhccCCcceeecccccccchhhHHHHHh
Confidence 66666777765432 237799999999999864 36777889999999999999987 344444
Q ss_pred H-hccCccEEEEeecCCCCccc--hhhhh-------------------------------------------hhhCcccc
Q 010991 167 S-LTKSHCKLGLTATLVREDER--ITDLN-------------------------------------------FLIGPKLY 200 (496)
Q Consensus 167 ~-~l~~~~~L~LTATp~r~d~~--~~~l~-------------------------------------------~l~gp~~~ 200 (496)
. .+.+.+||+|||||.++.-. +.-|+ ..+.|++.
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLL 618 (1157)
T ss_pred hccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHH
Confidence 4 66778999999999965433 22222 22223333
Q ss_pred ccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhc-------H---------------HHHH---------------
Q 010991 201 EANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN-------S---------------KKKQ--------------- 243 (496)
Q Consensus 201 ~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~-------~---------------~~~~--------------- 243 (496)
+.-..++ ...+++.....+.|.|+.-+...|-...+ . ..|.
T Consensus 619 RRlKkeV--E~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 619 RRLKKEV--EQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HhhhHHH--hhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 3333333 34555556666788888765443321110 0 0000
Q ss_pred ------HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcC
Q 010991 244 ------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS 312 (496)
Q Consensus 244 ------~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~ 312 (496)
...+...+|+.+++.++..+. +.|++|+.||+.+..++.+.++|. +..++|.|..++|...++.|+.-
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 012344789999999999998 899999999999999999999995 56799999999999999999973
Q ss_pred -CCccEEEEee----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHH
Q 010991 313 -RDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 375 (496)
Q Consensus 313 -~~~~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~ 375 (496)
..+.++++|+ |++..|||.++.|+..|+||+| |.+.|.++++++.+++||.+
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrig-----------q~~evRv~rl~tv~sveE~i 844 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG-----------QKKEVRVLRLITVNSVEEKI 844 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhh-----------chhheeeeeeehhhHHHHHH
Confidence 2677888888 8899999999999999999999 55679999999999999999
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcccc
Q 010991 376 STKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVG 429 (496)
Q Consensus 376 ~~~r~~~l~~~g~~~~vi~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~ 429 (496)
..+.+..+... -+||+. |.++. .++.+++.++|++++...+++++
T Consensus 845 l~~a~~Kl~~d---~kviqa--g~fdn----~st~~eR~~~Le~~l~~~~~~~~ 889 (1157)
T KOG0386|consen 845 LAEAFYKLDVD---GKVIQA--GKFDN----KSTAEEREMFLEQLLEMEGDEEE 889 (1157)
T ss_pred HHHHHHhcCch---Hhhhhc--ccccC----CCcHHHHHHHHHHHHhCCCcccc
Confidence 87766666443 367876 66665 67899999999999998876554
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=5.9e-35 Score=310.48 Aligned_cols=346 Identities=20% Similarity=0.206 Sum_probs=246.5
Q ss_pred CCCCcHHHHHHHHHHHhc---C----CCcceEEEeCCCCChHHHHHHHHHhc-----C-----CcEEEEEeChHHHHHHH
Q 010991 23 HAQPRPYQEKSLSKMFGN---G----RARSGIIVLPCGAGKSLVGVSAACRI-----K-----KSCLCLATNAVSVDQWA 85 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~---~----~~~~~il~~~tG~GKTl~~i~~~~~~-----~-----~~~LIl~P~~~L~~Qw~ 85 (496)
.-.|||||++++..++.+ . ..+++|+++.||+|||++.|++++.+ . .+.|||||.+ |+.+|+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWk 314 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWK 314 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HHHHHH
Confidence 457999999999998654 1 34579999999999999999998764 2 5799999976 899999
Q ss_pred HHHHHhhCCCCCcEEEEcCCcccc------------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcC
Q 010991 86 FQFKLWSTIQDDQICRFTSDSKER------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 153 (496)
Q Consensus 86 ~e~~~~~~~~~~~v~~~~g~~~~~------------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDE 153 (496)
+||.+|.+........+++..++. ..-...|.+.+|+.+. +.++.+....+|+||+||
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~----------~~~~~il~~~~glLVcDE 384 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETAS----------DYCRKILLIRPGLLVCDE 384 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHH----------HHHHHHhcCCCCeEEECC
Confidence 999999754344555666766641 0123568888998885 335677778999999999
Q ss_pred CcccCch--HHHHHHHhccCccEEEEeecCCCCccchh-hh---------------------------------------
Q 010991 154 VHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DL--------------------------------------- 191 (496)
Q Consensus 154 aH~~~~~--~~~~~l~~l~~~~~L~LTATp~r~d~~~~-~l--------------------------------------- 191 (496)
+|+.+|. .+.+++..+...+|++|||||+++|-..- .+
T Consensus 385 GHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 385 GHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred CCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 9999986 56778999999999999999997764421 12
Q ss_pred ------hhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH--HH-------------H------HH
Q 010991 192 ------NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS--KK-------------K------QA 244 (496)
Q Consensus 192 ------~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~--~~-------------~------~~ 244 (496)
..+....+++..-.. -.++|+......|.|..++-+...|-.-... .. + .+
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~i--l~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L 542 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDI--LLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSL 542 (776)
T ss_pred HHHHHHHHHHHhheeecccch--hhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHh
Confidence 222222222222211 1567888888889999887765544321111 00 0 00
Q ss_pred hh--------------------------hhC---CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----C
Q 010991 245 LY--------------------------VMN---PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----K 290 (496)
Q Consensus 245 l~--------------------------~~~---~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~ 290 (496)
+. ... .+|+..+..++....+..-.++.+.++.+..++.+...++ +
T Consensus 543 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~ 622 (776)
T KOG0390|consen 543 LLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEV 622 (776)
T ss_pred hcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceE
Confidence 00 011 2466677777754432334455555666666666666653 5
Q ss_pred CeEEcCCCHHHHHHHHHHHhcCCCc-cEEEEee----------------ccCCCCChhHHHHHccCcCcCCCCccccccC
Q 010991 291 PMIYGATSHVERTKILQAFKCSRDL-NTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAG 353 (496)
Q Consensus 291 ~~i~G~~~~~eR~~il~~F~~~~~~-~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~ 353 (496)
..+||.|+..+|+.+++.|++.+.. .|+++|+ +++..|||....|+++||.|.|
T Consensus 623 ~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG--------- 693 (776)
T KOG0390|consen 623 LRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG--------- 693 (776)
T ss_pred EEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCC---------
Confidence 6699999999999999999986444 7888888 7899999999999999999999
Q ss_pred CCCceeEEEEEEEcCCChHHHHHHHHHHHHHHcCccEEEEeC
Q 010991 354 GKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITS 395 (496)
Q Consensus 354 ~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~vi~~ 395 (496)
|.+.|++|.|++.||+||.+.+++ ...++.+--|+..
T Consensus 694 --QKk~v~iYrLlatGtiEEk~~qrq---~~K~~lS~~v~~~ 730 (776)
T KOG0390|consen 694 --QKKPVYIYRLLATGTIEEKIYQRQ---THKEGLSSMVFDE 730 (776)
T ss_pred --CcceEEEEEeecCCCchHHHHHHH---HHhhhhhheEEec
Confidence 777899999999999999876543 3344555455543
No 13
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.2e-33 Score=312.63 Aligned_cols=329 Identities=16% Similarity=0.166 Sum_probs=224.0
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
..+.|.|||..++..++... ..+++|+++||+|||+.++.++... .+++|||||.+ |+.||..|+.+|++++
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~-~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~s-L~~QW~~El~~kF~l~- 225 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRH-APRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPET-LQHQWLVEMLRRFNLR- 225 (956)
T ss_pred CCCCCCHHHHHHHHHHhhcc-CCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHH-HHHHHHHHHHHHhCCC-
Confidence 46789999999998766542 4589999999999999998887653 35999999975 8999999999887753
Q ss_pred CcEEEEcCCccc-------cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc------hHHH
Q 010991 97 DQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFR 163 (496)
Q Consensus 97 ~~v~~~~g~~~~-------~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~------~~~~ 163 (496)
..++.++... ......+++|+||+.+.... ...+.+....|++||+||||++.+ ..|+
T Consensus 226 --~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~-------~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~ 296 (956)
T PRK04914 226 --FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNK-------QRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ 296 (956)
T ss_pred --eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCH-------HHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH
Confidence 4455444211 11124679999999997531 233555567999999999999973 2455
Q ss_pred HHHHhc--cCccEEEEeecCCCCccch-hhhhhhhCcccccc-------------------------C------------
Q 010991 164 KVISLT--KSHCKLGLTATLVREDERI-TDLNFLIGPKLYEA-------------------------N------------ 203 (496)
Q Consensus 164 ~~l~~l--~~~~~L~LTATp~r~d~~~-~~l~~l~gp~~~~~-------------------------~------------ 203 (496)
.+..+ ...++|+|||||.++.... -.+..++.|..+.. .
T Consensus 297 -~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~l 375 (956)
T PRK04914 297 -VVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGEL 375 (956)
T ss_pred -HHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 44444 3568999999999644331 12222223322110 0
Q ss_pred -----HH------------------HHHh--------------------CCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 204 -----WL------------------DLVK--------------------GGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 204 -----~~------------------~l~~--------------------~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
.. +++. .|+ +...+..+..++++++...+-......
T Consensus 376 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~f-p~R~~~~~~l~~~~~y~~~~~~~~~~~ 454 (956)
T PRK04914 376 LGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGF-PKRELHPIPLPLPEQYQTAIKVSLEAR 454 (956)
T ss_pred hcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCC-CcCceeEeecCCCHHHHHHHHHhHHHH
Confidence 00 0000 111 122344455555544322211000000
Q ss_pred -------HH--HHh-----hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------CCeEEcCCCHH
Q 010991 241 -------KK--QAL-----YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHV 300 (496)
Q Consensus 241 -------~~--~~l-----~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~ 300 (496)
.. ... ......|+..+..+++.+ .++|+||||+++..++.+++.|. +..+||++++.
T Consensus 455 ~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~ 531 (956)
T PRK04914 455 ARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH---RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSII 531 (956)
T ss_pred HHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHH
Confidence 00 000 111234666666666544 47899999999999999999993 45699999999
Q ss_pred HHHHHHHHHhcCC-CccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEE
Q 010991 301 ERTKILQAFKCSR-DLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 364 (496)
Q Consensus 301 eR~~il~~F~~~~-~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~ 364 (496)
+|.++++.|++++ .++++|+|. .++.+|||..|.||+||++|+| |...+.+|.
T Consensus 532 eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiG-----------Q~~~V~i~~ 600 (956)
T PRK04914 532 ERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIG-----------QKHDIQIHV 600 (956)
T ss_pred HHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCC-----------CCceEEEEE
Confidence 9999999999853 689999988 4688899999999999999999 555799999
Q ss_pred EEcCCChHHHHHHH
Q 010991 365 LVSTDTQEMFYSTK 378 (496)
Q Consensus 365 lvs~~t~e~~~~~~ 378 (496)
++.++|.++.+.+.
T Consensus 601 ~~~~~t~~e~i~~~ 614 (956)
T PRK04914 601 PYLEGTAQERLFRW 614 (956)
T ss_pred ccCCCCHHHHHHHH
Confidence 99999999877653
No 14
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=6.3e-35 Score=309.69 Aligned_cols=149 Identities=22% Similarity=0.399 Sum_probs=121.4
Q ss_pred CCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
.+.||.||..+++|+..- ..+-||||+++||+|||+++|++++++ -+|.||||||+++.+ |.-||++|| |
T Consensus 613 rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwc--P 689 (1958)
T KOG0391|consen 613 RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWC--P 689 (1958)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhC--C
Confidence 467999999999975321 122599999999999999999988765 259999999998655 999999995 7
Q ss_pred CCcEEEEcCCcccc--------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHH
Q 010991 96 DDQICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRK 164 (496)
Q Consensus 96 ~~~v~~~~g~~~~~--------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~ 164 (496)
+.+|..|.|..+++ -.+.++|.||+|..+..+ ...|+...|.++||||+|+++|- .|+.
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd----------~~AFkrkrWqyLvLDEaqnIKnfksqrWQA 759 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQD----------LTAFKRKRWQYLVLDEAQNIKNFKSQRWQA 759 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhH----------HHHHHhhccceeehhhhhhhcchhHHHHHH
Confidence 88999999986643 135689999999988644 45666789999999999999974 6775
Q ss_pred HHHhccCccEEEEeecCCCCc
Q 010991 165 VISLTKSHCKLGLTATLVRED 185 (496)
Q Consensus 165 ~l~~l~~~~~L~LTATp~r~d 185 (496)
+++ +++.++|+|||||..+.
T Consensus 760 lln-fnsqrRLLLtgTPLqNs 779 (1958)
T KOG0391|consen 760 LLN-FNSQRRLLLTGTPLQNS 779 (1958)
T ss_pred Hhc-cchhheeeecCCchhhH
Confidence 554 78999999999999543
No 15
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.4e-33 Score=279.24 Aligned_cols=334 Identities=22% Similarity=0.275 Sum_probs=229.6
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
.+.+.|.||.....+.+.. +.++++|||+|||++|+..+.. .++++|+++||+-|+.|....|.+++++|+.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~----NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK----NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred ccccHHHHHHHHHHHHhhc----CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 3568999999999988875 6899999999999998888764 2458999999999999999999999999999
Q ss_pred cEEEEcCCccc----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HHHHHHHhc---
Q 010991 98 QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT--- 169 (496)
Q Consensus 98 ~v~~~~g~~~~----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~~l--- 169 (496)
.++.++|.... ..+....|+|+||+.+.|+.... .+...++.++|+||||+.-.+ .|-.+...+
T Consensus 88 ~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G--------rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 88 EIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG--------RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred heeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC--------ccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 99999998542 23456889999999999886532 222368889999999998754 565555422
Q ss_pred -cCccEEEEeecCCCCccchhhhhhhhC--ccccccCH-HHHHhCCCCCcceEEEEEcCCCHHH----------------
Q 010991 170 -KSHCKLGLTATLVREDERITDLNFLIG--PKLYEANW-LDLVKGGFIANVQCAEVWCPMTKEF---------------- 229 (496)
Q Consensus 170 -~~~~~L~LTATp~r~d~~~~~l~~l~g--p~~~~~~~-~~l~~~g~l~~~~~~~v~~~~~~~~---------------- 229 (496)
+..++|||||||--..+.+..+-..+| ....+..+ .|. ..|+.+.....+.++++++.
T Consensus 160 ~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV--~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk 237 (542)
T COG1111 160 AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDV--RPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLK 237 (542)
T ss_pred ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccH--HHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHH
Confidence 334789999999854444332221111 11111000 000 12222222222222222211
Q ss_pred ----------------------------------------------------------------HHHHHhhhcH------
Q 010991 230 ----------------------------------------------------------------FSEYLKKENS------ 239 (496)
Q Consensus 230 ----------------------------------------------------------------~~~yl~~~~~------ 239 (496)
+..|+.+...
T Consensus 238 ~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~ 317 (542)
T COG1111 238 PLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGG 317 (542)
T ss_pred HHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccc
Confidence 1112211000
Q ss_pred H------------HHH---Hhhhh----CCCcHHHHHHHHHH-hhhcCCCeEEEEeccHHHHHHHHHHcC-----CC-eE
Q 010991 240 K------------KKQ---ALYVM----NPNKFRACEFLIRF-HEQQRGDKIIVFADNLFALTEYAMKLR-----KP-MI 293 (496)
Q Consensus 240 ~------------~~~---~l~~~----~~~K~~~l~~ll~~-~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~-~i 293 (496)
. .+. ++... ...|++.+..|++. .+...+.++|||++++++++.+.+.|. +. .+
T Consensus 318 sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rF 397 (542)
T COG1111 318 SKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRF 397 (542)
T ss_pred hHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEE
Confidence 0 000 00011 23477777777744 333567899999999999999999995 22 23
Q ss_pred E--------cCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCcccc
Q 010991 294 Y--------GATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDR 350 (496)
Q Consensus 294 ~--------G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~ 350 (496)
- -+|+|.+..+++++|+.| +++|||+|+ +..+..|+...+||.||+||..
T Consensus 398 iGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r------ 470 (542)
T COG1111 398 IGQASREGDKGMSQKEQKEIIDQFRKG-EYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKR------ 470 (542)
T ss_pred eeccccccccccCHHHHHHHHHHHhcC-CceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCC------
Confidence 3 369999999999999999 999999999 4566679999999999999986
Q ss_pred ccCCCCceeEEEEEEEcCCChHHHHH---HHHHHHHH
Q 010991 351 MAGGKEEYNAFFYSLVSTDTQEMFYS---TKRQQFLI 384 (496)
Q Consensus 351 ~~~~~~~~~~~vy~lvs~~t~e~~~~---~~r~~~l~ 384 (496)
.+.+|-|++++|.+|.|+ .++.+.+.
T Consensus 471 --------~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 471 --------KGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred --------CCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 357899999999999554 34444444
No 16
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=5.7e-34 Score=290.97 Aligned_cols=327 Identities=16% Similarity=0.279 Sum_probs=245.1
Q ss_pred CCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..+|..||.++++|+.+- .++-+||++++||+|||+++|++++++ -+|+|||+|.++| .+|.+||.+| +|
T Consensus 565 ~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrF--lP 641 (1185)
T KOG0388|consen 565 KCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRF--LP 641 (1185)
T ss_pred hhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHh--Cc
Confidence 568999999999965432 233599999999999999999988765 4699999999985 7799999998 58
Q ss_pred CCcEEEEcCCcccc--------------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-
Q 010991 96 DDQICRFTSDSKER--------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH- 160 (496)
Q Consensus 96 ~~~v~~~~g~~~~~--------------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~- 160 (496)
..+++.|.|+..++ -..+.+|+||||+++..+ -..|++.+|.++|+|||+.+++.
T Consensus 642 ~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD----------eky~qkvKWQYMILDEAQAIKSSs 711 (1185)
T KOG0388|consen 642 SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD----------EKYLQKVKWQYMILDEAQAIKSSS 711 (1185)
T ss_pred cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech----------HHHHHhhhhhheehhHHHHhhhhh
Confidence 88999999986643 125689999999998755 24566679999999999999975
Q ss_pred --HHHHHHHhccCccEEEEeecCCCCccch------------------------------------------hhhhhhhC
Q 010991 161 --MFRKVISLTKSHCKLGLTATLVREDERI------------------------------------------TDLNFLIG 196 (496)
Q Consensus 161 --~~~~~l~~l~~~~~L~LTATp~r~d~~~------------------------------------------~~l~~l~g 196 (496)
.|..++ .+++..+|+|||||+++.-.. ..|..++.
T Consensus 712 S~RWKtLL-sF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILK 790 (1185)
T KOG0388|consen 712 SSRWKTLL-SFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILK 790 (1185)
T ss_pred hhHHHHHh-hhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHh
Confidence 455433 467788999999999553221 12233344
Q ss_pred ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhh---cH----------------------------------
Q 010991 197 PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE---NS---------------------------------- 239 (496)
Q Consensus 197 p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~---~~---------------------------------- 239 (496)
|...+...++++ .-+.......|.|.++..+...|.... +.
T Consensus 791 PFMLRRvKkdV~--sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~ 868 (1185)
T KOG0388|consen 791 PFMLRRVKKDVI--SELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVS 868 (1185)
T ss_pred HHHHHHHHHHHH--HHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcc
Confidence 444444333332 122233344556665432211110000 00
Q ss_pred --------------------------------------------------------------------------------
Q 010991 240 -------------------------------------------------------------------------------- 239 (496)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (496)
T Consensus 869 ~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Ka 948 (1185)
T KOG0388|consen 869 DNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKA 948 (1185)
T ss_pred cCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHH
Confidence
Q ss_pred HH--------------HHHh------------------------------------------------------hhhCCC
Q 010991 240 KK--------------KQAL------------------------------------------------------YVMNPN 251 (496)
Q Consensus 240 ~~--------------~~~l------------------------------------------------------~~~~~~ 251 (496)
.. ++++ +...++
T Consensus 949 vtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSg 1028 (1185)
T KOG0388|consen 949 VTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSG 1028 (1185)
T ss_pred HHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhcccc
Confidence 00 0000 023467
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----
Q 010991 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---- 322 (496)
Q Consensus 252 K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---- 322 (496)
|+..++.|+..+. +.|+++|+|.+.+.+++.+.++|. ...++|+....+|..++..|+. +++-|+++|+
T Consensus 1029 KL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGG 1106 (1185)
T ss_pred ceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCc
Confidence 8999999999988 899999999999999999999995 4568999999999999999999 5999999999
Q ss_pred ------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHH
Q 010991 323 ------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 378 (496)
Q Consensus 323 ------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~ 378 (496)
+.+..|||....|+++|+||.| |.+.|+||+|++++|+||++..+
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLG-----------QTrdvtvyrl~~rgTvEEk~l~r 1163 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLG-----------QTRDVTVYRLITRGTVEEKVLER 1163 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhcc-----------CccceeeeeecccccHHHHHHHH
Confidence 5678899999999999999999 67789999999999999988643
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=4.8e-33 Score=275.35 Aligned_cols=333 Identities=18% Similarity=0.219 Sum_probs=228.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC--CcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (496)
..|.|||++++...++.| ++++|+++||+|||++|++++.... -|.|||||.+ +...|.++|.+|+..-. .|.+
T Consensus 197 s~LlPFQreGv~faL~Rg--GR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAs-vrftWa~al~r~lps~~-pi~v 272 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERG--GRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPAS-VRFTWAKALNRFLPSIH-PIFV 272 (689)
T ss_pred HhhCchhhhhHHHHHhcC--CeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHH-HhHHHHHHHHHhccccc-ceEE
Confidence 368999999999988876 6999999999999999999987654 4999999987 57889999999975322 2444
Q ss_pred EcCCccc--cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH---HHHHHhc-cCccEE
Q 010991 102 FTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---RKVISLT-KSHCKL 175 (496)
Q Consensus 102 ~~g~~~~--~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~---~~~l~~l-~~~~~L 175 (496)
+.+.... .+.....|.|.+|+++... .+.+...+|.+||+||+|++++..- +.++..+ .+.+.|
T Consensus 273 v~~~~D~~~~~~t~~~v~ivSye~ls~l----------~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 273 VDKSSDPLPDVCTSNTVAIVSYEQLSLL----------HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVI 342 (689)
T ss_pred EecccCCccccccCCeEEEEEHHHHHHH----------HHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheE
Confidence 4443322 1234467999999998643 4566667899999999999997532 2233333 245889
Q ss_pred EEeecCC--CCccchh---hhhhhhCccccc-------------------------------------cCHHHHHhCCCC
Q 010991 176 GLTATLV--REDERIT---DLNFLIGPKLYE-------------------------------------ANWLDLVKGGFI 213 (496)
Q Consensus 176 ~LTATp~--r~d~~~~---~l~~l~gp~~~~-------------------------------------~~~~~l~~~g~l 213 (496)
+|||||. |..+... .+...++|..++ ....++ -+.|
T Consensus 343 LLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv--L~qL 420 (689)
T KOG1000|consen 343 LLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV--LKQL 420 (689)
T ss_pred EecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH--HhhC
Confidence 9999998 3322211 111122221111 111122 2344
Q ss_pred CcceEEE-EEcCCCHHHHH--------HHHhhhcHHHH---HHh--hhh-CCCcHH-HHHHHHH--HhhhcCCCeEEEEe
Q 010991 214 ANVQCAE-VWCPMTKEFFS--------EYLKKENSKKK---QAL--YVM-NPNKFR-ACEFLIR--FHEQQRGDKIIVFA 275 (496)
Q Consensus 214 ~~~~~~~-v~~~~~~~~~~--------~yl~~~~~~~~---~~l--~~~-~~~K~~-~l~~ll~--~~~~~~g~kiIVF~ 275 (496)
++.+-.. +.++-...... .|. ..+...+ .++ |.. .-.|.. .+++|+. .+....+.|++|||
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t-~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYT-KVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcc-hhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 4443222 22332211111 111 1111111 111 111 112443 5677775 12226789999999
Q ss_pred ccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----------------ccCCCCChhHHH
Q 010991 276 DNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEA 334 (496)
Q Consensus 276 ~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------------i~~~~~s~~~~~ 334 (496)
.....++.+...+. ...|+|+++..+|..+.+.|+.+.++.|-|+|- +...+|||..++
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 99999999998884 456899999999999999999988888888877 456779999999
Q ss_pred HHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHH
Q 010991 335 QRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 384 (496)
Q Consensus 335 Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~ 384 (496)
|+-+|+||+| |.-.|.||.||.++|.+++.+..-|+.|.
T Consensus 580 QAEDRaHRiG-----------QkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 580 QAEDRAHRIG-----------QKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred echhhhhhcc-----------ccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 9999999999 45579999999999999999988777775
No 18
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-32 Score=294.71 Aligned_cols=304 Identities=20% Similarity=0.204 Sum_probs=205.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH-Hhc----------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~-~~~----------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
+|.|+|.++++.++.+. +.|+++|||+|||++++.++ ..+ +..+||||||++|+.|+.+++.+|..
T Consensus 152 ~pt~iQ~~aip~~l~G~---dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~ 228 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGR---DMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGA 228 (545)
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhc
Confidence 69999999999888764 99999999999999975543 221 12489999999999999999999875
Q ss_pred CCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HH
Q 010991 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RK 164 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~ 164 (496)
.....+....|+... .+...++|+|+||+.|.....+.. ..+ ..+.+||+||||++.+..| ++
T Consensus 229 ~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~------~~l--~~v~~lViDEAd~mld~gf~~~i~~ 300 (545)
T PTZ00110 229 SSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV------TNL--RRVTYLVLDEADRMLDMGFEPQIRK 300 (545)
T ss_pred ccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC------CCh--hhCcEEEeehHHhhhhcchHHHHHH
Confidence 555556655555331 134568999999998865432210 112 5688999999999997755 44
Q ss_pred HHHhccC-ccEEEEeecCCCCccchhhhhhhhC--ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHH
Q 010991 165 VISLTKS-HCKLGLTATLVREDERITDLNFLIG--PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (496)
Q Consensus 165 ~l~~l~~-~~~L~LTATp~r~d~~~~~l~~l~g--p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~ 241 (496)
++..+.. ...+++|||........ ...++. |........++. ...........
T Consensus 301 il~~~~~~~q~l~~SAT~p~~v~~l--~~~l~~~~~v~i~vg~~~l~---~~~~i~q~~~~------------------- 356 (545)
T PTZ00110 301 IVSQIRPDRQTLMWSATWPKEVQSL--ARDLCKEEPVHVNVGSLDLT---ACHNIKQEVFV------------------- 356 (545)
T ss_pred HHHhCCCCCeEEEEEeCCCHHHHHH--HHHHhccCCEEEEECCCccc---cCCCeeEEEEE-------------------
Confidence 5555533 46799999985432211 111111 111111000000 00000000000
Q ss_pred HHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCcc
Q 010991 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (496)
Q Consensus 242 ~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~ 316 (496)
+....|...+..++.... ..+.++||||+++..++.++..|. +..+||++++++|.++++.|++| +++
T Consensus 357 -----~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~ 429 (545)
T PTZ00110 357 -----VEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSP 429 (545)
T ss_pred -----EechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCc
Confidence 111123344555555443 357899999999999999999995 46799999999999999999998 999
Q ss_pred EEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHH
Q 010991 317 TIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 381 (496)
Q Consensus 317 vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~ 381 (496)
+||+|+ .++.+.+...|+||+||+||.|. ....|.|++.+ +..++....+
T Consensus 430 ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~-------------~G~ai~~~~~~--~~~~~~~l~~ 494 (545)
T PTZ00110 430 IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGA-------------KGASYTFLTPD--KYRLARDLVK 494 (545)
T ss_pred EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCC-------------CceEEEEECcc--hHHHHHHHHH
Confidence 999998 35667899999999999999985 24567777654 3445555555
Q ss_pred HHHH
Q 010991 382 FLID 385 (496)
Q Consensus 382 ~l~~ 385 (496)
.|.+
T Consensus 495 ~l~~ 498 (545)
T PTZ00110 495 VLRE 498 (545)
T ss_pred HHHH
Confidence 6655
No 19
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.3e-30 Score=291.67 Aligned_cols=326 Identities=21% Similarity=0.270 Sum_probs=221.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.+++|+||.+.+..++.+ +++|++|||+|||++++.++... ++++|||||+++|+.||.+.|++++++++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~----n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 13 TIEARLYQQLLAATALKK----NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred cCCccHHHHHHHHHHhcC----CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 568999999999987764 78999999999999987776543 5799999999999999999999988777667
Q ss_pred EEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HHHHHHHhc----
Q 010991 99 ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT---- 169 (496)
Q Consensus 99 v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~~l---- 169 (496)
+..++|+.... ....++|+|+||+.+.+.... ..+....|++||+||||++.+. .+..++..+
T Consensus 89 v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~ 160 (773)
T PRK13766 89 IVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA 160 (773)
T ss_pred EEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--------CCCChhhCcEEEEECCccccccccHHHHHHHHHhcC
Confidence 88888875421 234578999999998754211 1122257999999999998854 344343333
Q ss_pred cCccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHH-----------------
Q 010991 170 KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS----------------- 231 (496)
Q Consensus 170 ~~~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~----------------- 231 (496)
+..+++||||||....+....+...++ ..+.-.+..+..-..++.+.....+.+++++....
T Consensus 161 ~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~ 240 (773)
T PRK13766 161 KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLK 240 (773)
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999765444332221111 11111111111112233333333344444332210
Q ss_pred ----------------------------------------------------------------HHHhhhcH--------
Q 010991 232 ----------------------------------------------------------------EYLKKENS-------- 239 (496)
Q Consensus 232 ----------------------------------------------------------------~yl~~~~~-------- 239 (496)
.|+.....
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~ 320 (773)
T PRK13766 241 ELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGS 320 (773)
T ss_pred HCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCc
Confidence 00000000
Q ss_pred ----------HHHHHh---h--hhCCCcHHHHHHHHHHhh-hcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcC--
Q 010991 240 ----------KKKQAL---Y--VMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGA-- 296 (496)
Q Consensus 240 ----------~~~~~l---~--~~~~~K~~~l~~ll~~~~-~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~-- 296 (496)
.....+ . .....|+..+..++.... ...+.++||||+++.+++.+++.|. +..+||.
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~ 400 (773)
T PRK13766 321 KASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQAS 400 (773)
T ss_pred HHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccc
Confidence 000000 0 011347777777775432 2467899999999999999999993 4567776
Q ss_pred ------CCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCC
Q 010991 297 ------TSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 355 (496)
Q Consensus 297 ------~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~ 355 (496)
+++.+|.+++++|+++ ++++||+|. +++.++|+.+++||+||++|.++
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g-~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---------- 469 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAG-EFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---------- 469 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC----------
Confidence 8999999999999998 899999988 45677899999999999999883
Q ss_pred CceeEEEEEEEcCCChHHHH
Q 010991 356 EEYNAFFYSLVSTDTQEMFY 375 (496)
Q Consensus 356 ~~~~~~vy~lvs~~t~e~~~ 375 (496)
+.+|.|++.+|.|+.+
T Consensus 470 ----~~v~~l~~~~t~ee~~ 485 (773)
T PRK13766 470 ----GRVVVLIAKGTRDEAY 485 (773)
T ss_pred ----CEEEEEEeCCChHHHH
Confidence 4578899999999844
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.98 E-value=2.1e-31 Score=280.24 Aligned_cols=276 Identities=18% Similarity=0.194 Sum_probs=191.6
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----------CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----------~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..|+|+|.++++.++.+. +.++++|||+|||++++.++.. + ..++|||||+++|+.||.+++..+
T Consensus 22 ~~pt~iQ~~ai~~il~g~---dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 22 REPTPIQQQAIPAVLEGR---DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 378999999999988764 8999999999999997665532 1 125999999999999999999998
Q ss_pred hCCCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----
Q 010991 92 STIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---- 162 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~---- 162 (496)
+......+..+.|+... .+.+.++|+|+|++.|.....+. .+....+++||+||||++.+..|
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~--------~~~l~~v~~lViDEah~ll~~~~~~~i 170 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN--------AVKLDQVEILVLDEADRMLDMGFIHDI 170 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC--------CcccccceEEEeecHHHHhccccHHHH
Confidence 76655566666665431 23466899999999986542211 11225789999999999987644
Q ss_pred HHHHHhccC-ccEEEEeecCCCCccchhhhh-hhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH
Q 010991 163 RKVISLTKS-HCKLGLTATLVREDERITDLN-FLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (496)
Q Consensus 163 ~~~l~~l~~-~~~L~LTATp~r~d~~~~~l~-~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~ 239 (496)
+.++..++. .+.+++|||+.... ..+. .++ .|......... ............+ +
T Consensus 171 ~~il~~l~~~~q~l~~SAT~~~~~---~~l~~~~~~~~~~i~~~~~~----~~~~~i~~~~~~~--~------------- 228 (456)
T PRK10590 171 RRVLAKLPAKRQNLLFSATFSDDI---KALAEKLLHNPLEIEVARRN----TASEQVTQHVHFV--D------------- 228 (456)
T ss_pred HHHHHhCCccCeEEEEeCCCcHHH---HHHHHHHcCCCeEEEEeccc----ccccceeEEEEEc--C-------------
Confidence 555655554 36899999986321 1111 111 12111110000 0000000000000 0
Q ss_pred HHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCC
Q 010991 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (496)
Q Consensus 240 ~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~ 314 (496)
...|..++..++.. ....++||||+++..++.+++.|. +..+||++++++|.++++.|++| +
T Consensus 229 ---------~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~ 295 (456)
T PRK10590 229 ---------KKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-D 295 (456)
T ss_pred ---------HHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-C
Confidence 01122344555543 235789999999999999999994 56799999999999999999998 9
Q ss_pred ccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 315 LNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 315 ~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+++||+|+ .++.+.++..|+||+||+||.|.
T Consensus 296 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~ 341 (456)
T PRK10590 296 IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAA 341 (456)
T ss_pred CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCC
Confidence 99999999 34566788999999999999985
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.98 E-value=4.4e-31 Score=281.41 Aligned_cols=305 Identities=16% Similarity=0.145 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-------------cCCcEEEEEeChHHHHHHHHHHHH
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-------------IKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-------------~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..|+|+|.++++.++.+. +.++++|||+|||++++.++.. .+..+|||+||++|+.|+.++++.
T Consensus 142 ~~ptpiQ~~aip~il~g~---dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 142 EFPTPIQMQAIPAALSGR---SLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 368999999999988664 9999999999999997665432 123699999999999999999988
Q ss_pred hhCCCCCcEEE-EcCCccc----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH--
Q 010991 91 WSTIQDDQICR-FTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (496)
Q Consensus 91 ~~~~~~~~v~~-~~g~~~~----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~-- 163 (496)
+....+..+.. ++|+... .+....+|+|+||+.|.....+. .+....+.+||+||||++.+..|+
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--------~~~l~~v~~lViDEad~ml~~gf~~~ 290 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--------DIELDNVSVLVLDEVDCMLERGFRDQ 290 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CccchheeEEEeecHHHHhhcchHHH
Confidence 76433344444 4444321 23456899999999886553322 111257789999999999876554
Q ss_pred --HHHHhccCccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 164 --KVISLTKSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 164 --~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
+++..++..+.+++|||......... ..+.. +........ ...........++++
T Consensus 291 i~~i~~~l~~~q~l~~SATl~~~v~~l~--~~~~~~~~~i~~~~~----~~~~~~v~q~~~~~~---------------- 348 (518)
T PLN00206 291 VMQIFQALSQPQVLLFSATVSPEVEKFA--SSLAKDIILISIGNP----NRPNKAVKQLAIWVE---------------- 348 (518)
T ss_pred HHHHHHhCCCCcEEEEEeeCCHHHHHHH--HHhCCCCEEEEeCCC----CCCCcceeEEEEecc----------------
Confidence 45555666789999999864322111 11111 111110000 000001111112222
Q ss_pred HHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------CCeEEcCCCHHHHHHHHHHHhcCCC
Q 010991 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCSRD 314 (496)
Q Consensus 241 ~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~il~~F~~~~~ 314 (496)
...|...+..++.... ....++||||+++..++.++..|. +..+||++++++|..+++.|++| +
T Consensus 349 --------~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~ 418 (518)
T PLN00206 349 --------TKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-E 418 (518)
T ss_pred --------chhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-C
Confidence 1112233344444332 234589999999999999998874 45699999999999999999998 9
Q ss_pred ccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHH
Q 010991 315 LNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 379 (496)
Q Consensus 315 ~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r 379 (496)
+++||+|+ .++.+.+...|+||+||+||.|. .+.++.+++.+ +......-
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~-------------~G~ai~f~~~~--~~~~~~~l 483 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGE-------------KGTAIVFVNEE--DRNLFPEL 483 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCC-------------CeEEEEEEchh--HHHHHHHH
Confidence 99999998 34566789999999999999984 24556666543 23333444
Q ss_pred HHHHHHc
Q 010991 380 QQFLIDQ 386 (496)
Q Consensus 380 ~~~l~~~ 386 (496)
...|...
T Consensus 484 ~~~l~~~ 490 (518)
T PLN00206 484 VALLKSS 490 (518)
T ss_pred HHHHHHc
Confidence 4555543
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.98 E-value=8.2e-31 Score=274.71 Aligned_cols=278 Identities=19% Similarity=0.134 Sum_probs=194.5
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c---------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I---------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~---------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
.+|+|+|.++++.++.+. +.++++|||+|||++++.++.. + ..++||++|+++|+.|+.+.+..|..
T Consensus 22 ~~p~~iQ~~ai~~~~~g~---d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 22 TRPTAIQAEAIPPALDGR---DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 468999999999988764 8999999999999997666543 1 24799999999999999999999876
Q ss_pred CCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHh
Q 010991 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~ 168 (496)
..+..+..++|+... .+...++|+|+|++.|...... ..+....+++||+||||++.+..|...+..
T Consensus 99 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--------~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--------ENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--------CCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 666778888887532 2345678999999988644221 112236788999999999998766555544
Q ss_pred cc-----CccEEEEeecCCCCccchhhhhh-hh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHH
Q 010991 169 TK-----SHCKLGLTATLVREDERITDLNF-LI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (496)
Q Consensus 169 l~-----~~~~L~LTATp~r~d~~~~~l~~-l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~ 241 (496)
+. ..+.+++|||+... ....+.. ++ .|..+....... ...........++
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~--~~~~~~~~~~~~~~~i~~~~~~~----~~~~i~~~~~~~~----------------- 227 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGD--AVQDFAERLLNDPVEVEAEPSRR----ERKKIHQWYYRAD----------------- 227 (434)
T ss_pred HHHhCccccEEEEEEeecCHH--HHHHHHHHHccCCEEEEecCCcc----cccCceEEEEEeC-----------------
Confidence 42 23679999998531 1111111 11 111111111000 0000000000000
Q ss_pred HHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCcc
Q 010991 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (496)
Q Consensus 242 ~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~ 316 (496)
....|..++..++.. ....++||||+++.+++.++..|. +.++||++++.+|..+++.|++| +++
T Consensus 228 ------~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~ 297 (434)
T PRK11192 228 ------DLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVN 297 (434)
T ss_pred ------CHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCc
Confidence 011234555566543 246799999999999999999984 56799999999999999999998 999
Q ss_pred EEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 317 TIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 317 vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+||+|+ .++.+.|...|+||+||+||.|.
T Consensus 298 vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 341 (434)
T PRK11192 298 VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGR 341 (434)
T ss_pred EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCC
Confidence 999999 24566789999999999999884
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.98 E-value=2.3e-31 Score=280.73 Aligned_cols=284 Identities=17% Similarity=0.170 Sum_probs=199.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----CCcEEEEEeChHHHHHHHHHHHHhhC-CCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWST-IQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~-~~~~ 97 (496)
.+.|+|.++++.++.+. +.++++|||+|||++++.++.. + ...+||+|||++|+.||.++++.+.. .+..
T Consensus 26 ~~t~iQ~~ai~~~l~g~---dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~ 102 (460)
T PRK11776 26 EMTPIQAQSLPAILAGK---DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNI 102 (460)
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCc
Confidence 58999999999888764 8999999999999986655543 2 22689999999999999999998753 3356
Q ss_pred cEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH----HHHHh
Q 010991 98 QICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISL 168 (496)
Q Consensus 98 ~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~~ 168 (496)
.+..++|+... .+....+|+|+|++.+.....+. .+.-.++++||+||||++.+..|. .++..
T Consensus 103 ~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~--------~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~ 174 (460)
T PRK11776 103 KVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG--------TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQ 174 (460)
T ss_pred EEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC--------CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHh
Confidence 67777776432 23467899999999987553321 111157889999999999876543 44444
Q ss_pred ccC-ccEEEEeecCCCCccchhhhh-hhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHh
Q 010991 169 TKS-HCKLGLTATLVREDERITDLN-FLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (496)
Q Consensus 169 l~~-~~~L~LTATp~r~d~~~~~l~-~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l 245 (496)
++. ...+++|||+...- ..+. .++ .|....... ...........+.++
T Consensus 175 ~~~~~q~ll~SAT~~~~~---~~l~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~~~--------------------- 225 (460)
T PRK11776 175 APARRQTLLFSATYPEGI---AAISQRFQRDPVEVKVES-----THDLPAIEQRFYEVS--------------------- 225 (460)
T ss_pred CCcccEEEEEEecCcHHH---HHHHHHhcCCCEEEEECc-----CCCCCCeeEEEEEeC---------------------
Confidence 443 36799999986321 1111 111 122111110 000011111111111
Q ss_pred hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 246 ~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
+..|...+..++..+ .+.++||||+++..++.+++.|. +..+||++++.+|..+++.|++| .+++||+
T Consensus 226 ---~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLVa 298 (460)
T PRK11776 226 ---PDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLVA 298 (460)
T ss_pred ---cHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEE
Confidence 112445566666543 36789999999999999999984 67799999999999999999998 9999999
Q ss_pred ee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcC
Q 010991 321 SK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 321 s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~ 368 (496)
|+ .++.+.++..|+||+||+||.|. .+..|.|++.
T Consensus 299 Tdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~-------------~G~ai~l~~~ 348 (460)
T PRK11776 299 TDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGS-------------KGLALSLVAP 348 (460)
T ss_pred ecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCC-------------cceEEEEEch
Confidence 99 35666789999999999999985 2456777764
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=9.9e-32 Score=280.57 Aligned_cols=276 Identities=17% Similarity=0.142 Sum_probs=191.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c------------CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~------------~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+.|+|.++++.++.+. +.++.+|||+|||++++.++.. + ...+|||||+++|+.||.+++..+
T Consensus 30 ~pt~iQ~~aip~il~g~---dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l 106 (423)
T PRK04837 30 NCTPIQALALPLTLAGR---DVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPL 106 (423)
T ss_pred CCCHHHHHHHHHHhCCC---cEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHH
Confidence 78999999999888764 9999999999999997665532 1 136999999999999999999988
Q ss_pred hCCCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH--
Q 010991 92 STIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-- 164 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~-- 164 (496)
....+..+..+.|+... .+...++|+|+|++.|.....+. .+....++++|+||||++.+..|..
T Consensus 107 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--------~~~l~~v~~lViDEad~l~~~~f~~~i 178 (423)
T PRK04837 107 AQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN--------HINLGAIQVVVLDEADRMFDLGFIKDI 178 (423)
T ss_pred hccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CcccccccEEEEecHHHHhhcccHHHH
Confidence 76556677777766431 23456799999999886543211 1222678999999999998765543
Q ss_pred --HHHhccC---ccEEEEeecCCCCccchhhhh-hhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhc
Q 010991 165 --VISLTKS---HCKLGLTATLVREDERITDLN-FLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (496)
Q Consensus 165 --~l~~l~~---~~~L~LTATp~r~d~~~~~l~-~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~ 238 (496)
++..++. ...+++|||+...... ... .+..|.......... ..........
T Consensus 179 ~~i~~~~~~~~~~~~~l~SAT~~~~~~~--~~~~~~~~p~~i~v~~~~~----~~~~i~~~~~----------------- 235 (423)
T PRK04837 179 RWLFRRMPPANQRLNMLFSATLSYRVRE--LAFEHMNNPEYVEVEPEQK----TGHRIKEELF----------------- 235 (423)
T ss_pred HHHHHhCCCccceeEEEEeccCCHHHHH--HHHHHCCCCEEEEEcCCCc----CCCceeEEEE-----------------
Confidence 4444442 2458899998532111 111 111222111100000 0000000000
Q ss_pred HHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCC
Q 010991 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR 313 (496)
Q Consensus 239 ~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~ 313 (496)
+.....|...+..++... ...++||||+++..++.++..|. +..+||++++++|..+++.|++|
T Consensus 236 -------~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g- 304 (423)
T PRK04837 236 -------YPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG- 304 (423)
T ss_pred -------eCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-
Confidence 111122444555666433 36799999999999999999984 57899999999999999999998
Q ss_pred CccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 314 DLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 314 ~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
++++||+|+ .++.+.++..|+||+||+||.|+
T Consensus 305 ~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~ 351 (423)
T PRK04837 305 DLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGA 351 (423)
T ss_pred CCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCC
Confidence 999999999 34667799999999999999995
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=6.3e-31 Score=278.33 Aligned_cols=300 Identities=17% Similarity=0.183 Sum_probs=202.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c------------CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~------------~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.++|+|.++++.++.+. +.|+++|||+|||++++..+.. + ...+|||+||++|+.||.+.+..+
T Consensus 109 ~~~~iQ~~ai~~~~~G~---dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l 185 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGH---DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAAL 185 (475)
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHh
Confidence 58999999999888764 8999999999999997655432 1 236899999999999999999987
Q ss_pred hCCCCCcEEEEcCCccc------cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH----
Q 010991 92 STIQDDQICRFTSDSKE------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM---- 161 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~------~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~---- 161 (496)
....+..+..+.|+... .....++|+|+|+++|.....+.. ..+ ..+++||+||||++.+..
T Consensus 186 ~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~------~~l--~~l~~lViDEah~l~~~~~~~~ 257 (475)
T PRK01297 186 TKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE------VHL--DMVEVMVLDEADRMLDMGFIPQ 257 (475)
T ss_pred hccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC------ccc--ccCceEEechHHHHHhcccHHH
Confidence 65555667777776331 123467899999999965422210 112 578899999999998754
Q ss_pred HHHHHHhccC---ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhc
Q 010991 162 FRKVISLTKS---HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (496)
Q Consensus 162 ~~~~l~~l~~---~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~ 238 (496)
+++++..+.. ...+++|||........ .-.++..|........... ..... ..+
T Consensus 258 l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~-~~~~~~~~~~v~~~~~~~~----~~~~~-~~~----------------- 314 (475)
T PRK01297 258 VRQIIRQTPRKEERQTLLFSATFTDDVMNL-AKQWTTDPAIVEIEPENVA----SDTVE-QHV----------------- 314 (475)
T ss_pred HHHHHHhCCCCCCceEEEEEeecCHHHHHH-HHHhccCCEEEEeccCcCC----CCccc-EEE-----------------
Confidence 4455555532 46899999974211110 0011222322211110000 00000 000
Q ss_pred HHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCC
Q 010991 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR 313 (496)
Q Consensus 239 ~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~ 313 (496)
..+.+..|...+..++.. ....++||||+++..++.+++.|. +..+||++++++|.++++.|++|
T Consensus 315 ------~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G- 384 (475)
T PRK01297 315 ------YAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG- 384 (475)
T ss_pred ------EEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-
Confidence 011122344555566543 346799999999999999999984 56799999999999999999998
Q ss_pred CccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHH
Q 010991 314 DLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 378 (496)
Q Consensus 314 ~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~ 378 (496)
++++||+|+ .++.++|...|+||+||+||.|. .+.++.+++.+ +.++...
T Consensus 385 ~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~-------------~g~~i~~~~~~--d~~~~~~ 449 (475)
T PRK01297 385 KIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGA-------------SGVSISFAGED--DAFQLPE 449 (475)
T ss_pred CCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCC-------------CceEEEEecHH--HHHHHHH
Confidence 999999999 35667899999999999999985 24566666543 4454444
Q ss_pred HHHHH
Q 010991 379 RQQFL 383 (496)
Q Consensus 379 r~~~l 383 (496)
-.+++
T Consensus 450 ~~~~~ 454 (475)
T PRK01297 450 IEELL 454 (475)
T ss_pred HHHHh
Confidence 33333
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=1.3e-30 Score=279.84 Aligned_cols=278 Identities=15% Similarity=0.108 Sum_probs=192.7
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c------------CCcEEEEEeChHHHHHHHHHHHH
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~------------~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..+.|+|.++++.++.+. +.++.+|||+|||++++.++.. + ..++|||+|+++|+.|+.+.+.+
T Consensus 30 ~~ptpiQ~~~ip~~l~G~---Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 30 TRCTPIQALTLPVALPGG---DVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 379999999999888775 9999999999999997666543 1 14799999999999999999999
Q ss_pred hhCCCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH--
Q 010991 91 WSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (496)
Q Consensus 91 ~~~~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~-- 163 (496)
|+...+..+..++|+... .+...++|+|+|++.|.....+. ..+....+++|||||||++.+..|.
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-------~~~~l~~v~~lViDEAh~lld~gf~~~ 179 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-------KVVSLHACEICVLDEADRMFDLGFIKD 179 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc-------cccchhheeeeEecCHHHHhhcchHHH
Confidence 876555677777776432 13456789999999987543221 1122256789999999999876543
Q ss_pred --HHHHhcc---CccEEEEeecCCCCccchhhhhhhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhh
Q 010991 164 --KVISLTK---SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (496)
Q Consensus 164 --~~l~~l~---~~~~L~LTATp~r~d~~~~~l~~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~ 237 (496)
.++..++ ....+++|||+...... ....++ .|....... ...........+..+
T Consensus 180 i~~il~~lp~~~~~q~ll~SATl~~~v~~--l~~~~l~~p~~i~v~~-----~~~~~~~i~q~~~~~------------- 239 (572)
T PRK04537 180 IRFLLRRMPERGTRQTLLFSATLSHRVLE--LAYEHMNEPEKLVVET-----ETITAARVRQRIYFP------------- 239 (572)
T ss_pred HHHHHHhcccccCceEEEEeCCccHHHHH--HHHHHhcCCcEEEecc-----ccccccceeEEEEec-------------
Confidence 3444444 34679999998532111 111111 111111000 000000000111111
Q ss_pred cHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcC
Q 010991 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS 312 (496)
Q Consensus 238 ~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~ 312 (496)
.+..|...+..++.. ..+.++||||+++..++.+++.|. +..+||++++.+|.++++.|+++
T Consensus 240 ----------~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G 306 (572)
T PRK04537 240 ----------ADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306 (572)
T ss_pred ----------CHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 111233444445443 347899999999999999999984 67899999999999999999998
Q ss_pred CCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 313 RDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 313 ~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
++++||+|+ .++.+.+...|+||+||++|.|.
T Consensus 307 -~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 307 -QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE 353 (572)
T ss_pred -CCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCC
Confidence 999999999 34566899999999999999985
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.4e-29 Score=267.43 Aligned_cols=269 Identities=17% Similarity=0.175 Sum_probs=190.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
.+||+|.++++.++.+. ++++++|||+|||++++.++....+.+|||+|+++|+.||.+.+..+ ++ .+..+++
T Consensus 11 ~~r~~Q~~ai~~~l~g~---dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~-gi---~~~~l~~ 83 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGR---DCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKAS-GI---PATFLNS 83 (470)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHc-CC---cEEEEeC
Confidence 68999999999988775 89999999999999988887777889999999999999999999874 33 4556666
Q ss_pred Ccccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHH-hcCCccEEEEcCCcccCch--HHHH-------H
Q 010991 105 DSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH--MFRK-------V 165 (496)
Q Consensus 105 ~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~--~~~~-------~ 165 (496)
+.... ..+..+|+++||+.+.... .....+ ....+++||+||||++..- .|+. +
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~-------~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASN-------RLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCch-------hHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 54321 2345789999999986431 122333 4478999999999999742 2332 2
Q ss_pred HHhccCccEEEEeecCCCCccchhhhhhhh---CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHH
Q 010991 166 ISLTKSHCKLGLTATLVREDERITDLNFLI---GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (496)
Q Consensus 166 l~~l~~~~~L~LTATp~r~d~~~~~l~~l~---gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~ 242 (496)
...++...+++||||+..... .++...+ .|.++..+ +-.+.....+.....
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~--~di~~~l~l~~~~~~~~s--------~~r~nl~~~v~~~~~---------------- 210 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVR--EDILRQLNLKNPQIFCTS--------FDRPNLYYEVRRKTP---------------- 210 (470)
T ss_pred HHHcCCCceEEEecCCCHHHH--HHHHHHcCCCCCcEEeCC--------CCCCCcEEEEEeCCc----------------
Confidence 334456679999999974321 1222211 22222111 111111111111000
Q ss_pred HHhhhhCCCcH-HHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCcc
Q 010991 243 QALYVMNPNKF-RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (496)
Q Consensus 243 ~~l~~~~~~K~-~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~ 316 (496)
..+ .++..+... ..+.++||||+++..++.++..|. +..+||++++++|.++++.|++| +++
T Consensus 211 --------~~~~~l~~~l~~~---~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~ 278 (470)
T TIGR00614 211 --------KILEDLLRFIRKE---FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQ 278 (470)
T ss_pred --------cHHHHHHHHHHHh---cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCc
Confidence 011 122222222 357788999999999999999984 67899999999999999999998 999
Q ss_pred EEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 317 TIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 317 vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+||+|. ..+.+.|...|+||+||+||.|.
T Consensus 279 vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~ 322 (470)
T TIGR00614 279 VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGL 322 (470)
T ss_pred EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCC
Confidence 999998 35677899999999999999985
No 28
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=266.22 Aligned_cols=282 Identities=20% Similarity=0.205 Sum_probs=201.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH-HHhc-----------CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA-ACRI-----------KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~-~~~~-----------~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..|.|.|.++++-++.+. +++..+.||+|||+..+.+ +.++ ...+|||+||++|+.|..+++..+
T Consensus 112 ~~PtpIQaq~wp~~l~Gr---D~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALSGR---DLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCCchhhhcccceeccCC---ceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 379999999999877764 9999999999999995444 3332 125999999999999999999999
Q ss_pred hCCCCCcEEEEcCC-ccc----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----
Q 010991 92 STIQDDQICRFTSD-SKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---- 162 (496)
Q Consensus 92 ~~~~~~~v~~~~g~-~~~----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~---- 162 (496)
+.-...+..+++|+ .+. .+..+.+|+|+||+.|....+.. .+.-..+.++|+|||++|....|
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g--------~~~l~~v~ylVLDEADrMldmGFe~qI 260 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG--------SLNLSRVTYLVLDEADRMLDMGFEPQI 260 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC--------CccccceeEEEeccHHhhhccccHHHH
Confidence 76554444444444 332 24567899999999987554432 11125788999999999998755
Q ss_pred HHHHHhc-cCc-cEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 163 RKVISLT-KSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 163 ~~~l~~l-~~~-~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
++++..+ +.. ..|+.|||-....... ...|+.++.-..+- -..+. .....
T Consensus 261 ~~Il~~i~~~~rQtlm~saTwp~~v~~l--------------------A~~fl~~~~~i~ig--~~~~~------~a~~~ 312 (519)
T KOG0331|consen 261 RKILSQIPRPDRQTLMFSATWPKEVRQL--------------------AEDFLNNPIQINVG--NKKEL------KANHN 312 (519)
T ss_pred HHHHHhcCCCcccEEEEeeeccHHHHHH--------------------HHHHhcCceEEEec--chhhh------hhhcc
Confidence 5677777 333 4899999975332221 11122211111111 00010 11111
Q ss_pred HHHHh-hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCC
Q 010991 241 KKQAL-YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (496)
Q Consensus 241 ~~~~l-~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~ 314 (496)
-.+++ .+....|...+..+|..+....+.|+||||+++..++.|+..|. +..|||+.+|.+|+.+++.|++| +
T Consensus 313 i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG-~ 391 (519)
T KOG0331|consen 313 IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG-K 391 (519)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-C
Confidence 12222 23334577777788865533567799999999999999999985 56899999999999999999999 9
Q ss_pred ccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 315 LNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 315 ~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++||+|+ .++.+.+...|+||+||+||++.
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~ 437 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGK 437 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCC
Confidence 99999999 46778899999999999999884
No 29
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=2.9e-30 Score=264.72 Aligned_cols=351 Identities=17% Similarity=0.192 Sum_probs=239.0
Q ss_pred CCCCCCcHHHHHHHHHHHh--cCCCcceEEEeCCCCChHHHHHHHHHhc-------------CCcEEEEEeChHHHHHHH
Q 010991 21 KPHAQPRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWA 85 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~~~~~-------------~~~~LIl~P~~~L~~Qw~ 85 (496)
...+.|.|||..++.|+.- +..+.+||++++||+|||+..++++..- ..++|||||-+ |+.||.
T Consensus 321 g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~ 399 (901)
T KOG4439|consen 321 GLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWE 399 (901)
T ss_pred cceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHH
Confidence 3467899999999997643 3345689999999999999888877431 11699999976 899999
Q ss_pred HHHHHhhCCCCCcEEEEcCCcccccc----CCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-
Q 010991 86 FQFKLWSTIQDDQICRFTSDSKERFR----GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH- 160 (496)
Q Consensus 86 ~e~~~~~~~~~~~v~~~~g~~~~~~~----~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~- 160 (496)
.|+.+...-....|.+|+|..+..+. ..++|+||||..+.+...---+......-|....|..||+||||.+.+.
T Consensus 400 ~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~ 479 (901)
T KOG4439|consen 400 AEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN 479 (901)
T ss_pred HHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc
Confidence 99999876667789999999843222 4589999999999872110000001112333468999999999999986
Q ss_pred -HHHHHHHhccCccEEEEeecCCCCccch-hhh------------------------------hhhhCccccccCHHHHH
Q 010991 161 -MFRKVISLTKSHCKLGLTATLVREDERI-TDL------------------------------NFLIGPKLYEANWLDLV 208 (496)
Q Consensus 161 -~~~~~l~~l~~~~~L~LTATp~r~d~~~-~~l------------------------------~~l~gp~~~~~~~~~l~ 208 (496)
.....+..+.+.++.+|||||+.+.... -.| +.+..+...+.+...+.
T Consensus 480 tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rlnll~K~LmLRRTKdQl~ 559 (901)
T KOG4439|consen 480 TQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRLNLLTKSLMLRRTKDQLQ 559 (901)
T ss_pred hhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhhhhhhhhhHHhhhhHHhhc
Confidence 4556777889999999999999776431 011 11222222333333333
Q ss_pred hCC---CCCcceEEEEEcCCCHHHHHHH--------------HhhhcH--------------------------------
Q 010991 209 KGG---FIANVQCAEVWCPMTKEFFSEY--------------LKKENS-------------------------------- 239 (496)
Q Consensus 209 ~~g---~l~~~~~~~v~~~~~~~~~~~y--------------l~~~~~-------------------------------- 239 (496)
..| .++...+......++.+....| +.....
T Consensus 560 a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~a 639 (901)
T KOG4439|consen 560 ANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLA 639 (901)
T ss_pred cccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhh
Confidence 223 2334444444445544332211 110000
Q ss_pred ----------------HHHHHh------------------------------------------hh--h-----------
Q 010991 240 ----------------KKKQAL------------------------------------------YV--M----------- 248 (496)
Q Consensus 240 ----------------~~~~~l------------------------------------------~~--~----------- 248 (496)
+-|+.. .+ .
T Consensus 640 agsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~ 719 (901)
T KOG4439|consen 640 AGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPD 719 (901)
T ss_pred cCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchh
Confidence 000000 00 0
Q ss_pred -------CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCC-Cc
Q 010991 249 -------NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR-DL 315 (496)
Q Consensus 249 -------~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~-~~ 315 (496)
.+.|+..+.++++.......+|++|.++++..+..+...|+ +.-+||.....+|+.+++.|+... ..
T Consensus 720 q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~ 799 (901)
T KOG4439|consen 720 QAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGA 799 (901)
T ss_pred hhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCc
Confidence 11244444444433322678899999999999999999996 455899999999999999997643 47
Q ss_pred cEEEEee----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHH
Q 010991 316 NTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 379 (496)
Q Consensus 316 ~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r 379 (496)
+|+++|- +++..|||.-+.|+.+||.|.| |.+.|++|+++..||+|..+..-+
T Consensus 800 rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G-----------QkK~V~IhR~~~~gTvEqrV~~LQ 868 (901)
T KOG4439|consen 800 RVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG-----------QKKDVFIHRLMCKGTVEQRVKSLQ 868 (901)
T ss_pred eEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc-----------ccCceEEEEEEecCcHHHHHHHHH
Confidence 8888777 6778899999999999999999 666799999999999999876544
Q ss_pred HHHH
Q 010991 380 QQFL 383 (496)
Q Consensus 380 ~~~l 383 (496)
...+
T Consensus 869 dkKl 872 (901)
T KOG4439|consen 869 DKKL 872 (901)
T ss_pred HHHH
Confidence 4444
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=4.4e-30 Score=277.45 Aligned_cols=276 Identities=17% Similarity=0.158 Sum_probs=190.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-hc-----CCcEEEEEeChHHHHHHHHHHHHhhCC-CC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (496)
.+|.|+|.++++.++.+. ++|+.+|||+|||++++.++. .+ ...+|||||+++|+.||.+++.+|... +.
T Consensus 27 ~~ptpiQ~~ai~~ll~g~---dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGR---DVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 479999999999988764 899999999999999655443 22 236899999999999999999988643 35
Q ss_pred CcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH----HHH
Q 010991 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VIS 167 (496)
Q Consensus 97 ~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~l~ 167 (496)
..+..++|+... .+...++|+|+|++.+.....+. .+.-.++.+|||||||.+....|.. ++.
T Consensus 104 i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~--------~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 104 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG--------TLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 (629)
T ss_pred ceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CcchhhceEEEeccHHHHhhcccHHHHHHHHH
Confidence 566666666431 13456889999999886553321 1112578899999999998775543 344
Q ss_pred hccC-ccEEEEeecCCCCccchhhhh-hhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHH
Q 010991 168 LTKS-HCKLGLTATLVREDERITDLN-FLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (496)
Q Consensus 168 ~l~~-~~~L~LTATp~r~d~~~~~l~-~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~ 244 (496)
.++. ...+++|||+...-. .+. .++ .|....... ...........++.
T Consensus 176 ~lp~~~q~llfSAT~p~~i~---~i~~~~l~~~~~i~i~~------~~~~~~~i~q~~~~-------------------- 226 (629)
T PRK11634 176 QIPEGHQTALFSATMPEAIR---RITRRFMKEPQEVRIQS------SVTTRPDISQSYWT-------------------- 226 (629)
T ss_pred hCCCCCeEEEEEccCChhHH---HHHHHHcCCCeEEEccC------ccccCCceEEEEEE--------------------
Confidence 4443 467999999863222 111 111 121111100 00000000000000
Q ss_pred hhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEE
Q 010991 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (496)
Q Consensus 245 l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv 319 (496)
+....|...+..++... ...++||||+++..++.++..|. +..+||++++.+|.+++++|+++ ++++||
T Consensus 227 --v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILV 300 (629)
T PRK11634 227 --VWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILI 300 (629)
T ss_pred --echhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEE
Confidence 11112445555565443 35789999999999999999984 56799999999999999999998 999999
Q ss_pred Eee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 320 LSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 320 ~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+|+ .++.+.+...|+||+||+||.|+
T Consensus 301 ATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 (629)
T ss_pred EcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC
Confidence 999 24566789999999999999995
No 31
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1e-29 Score=287.16 Aligned_cols=322 Identities=18% Similarity=0.218 Sum_probs=208.8
Q ss_pred CCCCcHHHHHHHHHHHh---cCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 23 HAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
.+.|||||.+|+..+.. .+ .++++|++|||+|||++++.++..+ .+++|||||+.+|+.||.++|..+. .
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g-~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~-~ 488 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEG-QREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTK-I 488 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-cCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcc-c
Confidence 46899999999988753 22 2579999999999999988877553 2589999999999999999999863 2
Q ss_pred CCC-cEE-EEc--CCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-----------
Q 010991 95 QDD-QIC-RFT--SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA----------- 159 (496)
Q Consensus 95 ~~~-~v~-~~~--g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~----------- 159 (496)
+.. .+. +++ +-..........|+|+|++.+.+......+ ....+....+++||+||||+..+
T Consensus 489 ~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~---~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 489 EGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDD---PMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred ccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhcccc---ccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 221 111 111 111111234578999999988654211100 00112235789999999999742
Q ss_pred --------hHHHHHHHhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCc----ceEEEEEc----
Q 010991 160 --------HMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIAN----VQCAEVWC---- 223 (496)
Q Consensus 160 --------~~~~~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~----~~~~~v~~---- 223 (496)
..|++++..+. ..+|||||||.+. ...+||..+|.++..+++..|++.+ +.+.....
T Consensus 566 ~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~------t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi 638 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYFD-AVKIGLTATPALH------TTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGI 638 (1123)
T ss_pred cchhhhHHHHHHHHHhhcC-ccEEEEecCCccc------hhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccc
Confidence 46888888765 5789999999853 2457888899999999999999983 33322110
Q ss_pred CCC-HHHHHHHH------h-h-hcHH-----HHHHhhhhCCCcH-HHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc
Q 010991 224 PMT-KEFFSEYL------K-K-ENSK-----KKQALYVMNPNKF-RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288 (496)
Q Consensus 224 ~~~-~~~~~~yl------~-~-~~~~-----~~~~l~~~~~~K~-~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L 288 (496)
... ++....|- . . .... ....-.+.++... .++..+++......+.|+||||.++.+++.+.+.|
T Consensus 639 ~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L 718 (1123)
T PRK11448 639 HFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLL 718 (1123)
T ss_pred cccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHH
Confidence 000 11000000 0 0 0000 0000001112111 24566665543233479999999999999888765
Q ss_pred C--------------CCeEEcCCCHHHHHHHHHHHhcCCCcc-EEEEee---------------ccCCCCChhHHHHHcc
Q 010991 289 R--------------KPMIYGATSHVERTKILQAFKCSRDLN-TIFLSK---------------ISSHAGSRRQEAQRLG 338 (496)
Q Consensus 289 ~--------------~~~i~G~~~~~eR~~il~~F~~~~~~~-vlv~s~---------------i~~~~~s~~~~~Qr~G 338 (496)
+ +..++|+++ ++.+++++|+++ ... ++|.+. ++.+..|+..|.|++|
T Consensus 719 ~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~-~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 719 KEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE-RLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC-CCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 2 234888886 578899999987 554 455444 5677789999999999
Q ss_pred CcCcCCCCccccccCCCCceeEEEEEEEc
Q 010991 339 RILRAKGKLEDRMAGGKEEYNAFFYSLVS 367 (496)
Q Consensus 339 R~~R~g~~~~~~~~~~~~~~~~~vy~lvs 367 (496)
|+.|..+.. .+..+.||+++.
T Consensus 796 RgtR~~~~~--------~K~~f~I~D~vg 816 (1123)
T PRK11448 796 RATRLCPEI--------GKTHFRIFDAVD 816 (1123)
T ss_pred hhccCCccC--------CCceEEEEehHH
Confidence 999987620 123678888764
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=1.2e-28 Score=271.22 Aligned_cols=317 Identities=15% Similarity=0.171 Sum_probs=208.4
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.|+|+|.++++.++.+. +.++.+|||+|||++++.++.. + ...+|||+|+++|+.|..+++.++. ..+..+
T Consensus 36 ~p~~~Q~~ai~~il~G~---nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELAHAGR---HVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT-LRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHHHCCC---CEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEE
Confidence 69999999999887664 9999999999999997665432 2 2479999999999999999999985 345678
Q ss_pred EEEcCCccc----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHHHHHhc---
Q 010991 100 CRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT--- 169 (496)
Q Consensus 100 ~~~~g~~~~----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~l--- 169 (496)
..++|+... .+...++|+|+||++|....-... .++...+ .+.++||+||||.+... .+..++..+
T Consensus 112 ~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~--~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL~ri 187 (742)
T TIGR03817 112 ATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSH--ARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRLRRL 187 (742)
T ss_pred EEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccch--hHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHHHHH
Confidence 888888543 234568999999999974322111 1122334 57899999999998652 223333332
Q ss_pred ----c-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHH
Q 010991 170 ----K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (496)
Q Consensus 170 ----~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~ 244 (496)
. ....+++|||...... ....++|....... ..+-........+|.+.-.+ .........+.
T Consensus 188 ~~~~g~~~q~i~~SATi~n~~~---~~~~l~g~~~~~i~-----~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~r~- 254 (742)
T TIGR03817 188 CARYGASPVFVLASATTADPAA---AASRLIGAPVVAVT-----EDGSPRGARTVALWEPPLTE----LTGENGAPVRR- 254 (742)
T ss_pred HHhcCCCCEEEEEecCCCCHHH---HHHHHcCCCeEEEC-----CCCCCcCceEEEEecCCccc----ccccccccccc-
Confidence 2 2468999999864432 22334442211111 11111111222233321000 00000000000
Q ss_pred hhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc-------------CCCeEEcCCCHHHHHHHHHHHhc
Q 010991 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------RKPMIYGATSHVERTKILQAFKC 311 (496)
Q Consensus 245 l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L-------------~~~~i~G~~~~~eR~~il~~F~~ 311 (496)
.....+...+..++ ..+.++||||+++..++.++..| ++..+||++++++|.+++++|++
T Consensus 255 --~~~~~~~~~l~~l~-----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 255 --SASAEAADLLADLV-----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred --chHHHHHHHHHHHH-----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 00001223444444 24679999999999999998865 24679999999999999999999
Q ss_pred CCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 312 SRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 312 ~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
| ++++||+|+ ..+.+.+...|.||+||+||.|+ ...++.+++.+..+.++.
T Consensus 328 G-~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~-------------~g~ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 328 G-ELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQ-------------GALVVLVARDDPLDTYLV 393 (742)
T ss_pred C-CceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCC-------------CcEEEEEeCCChHHHHHH
Confidence 9 999999999 45677899999999999999985 245666777666676666
Q ss_pred HHHHHHH
Q 010991 377 TKRQQFL 383 (496)
Q Consensus 377 ~~r~~~l 383 (496)
.+.+.++
T Consensus 394 ~~~~~~~ 400 (742)
T TIGR03817 394 HHPEALF 400 (742)
T ss_pred hCHHHHh
Confidence 5554444
No 33
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.97 E-value=6.3e-30 Score=253.03 Aligned_cols=342 Identities=17% Similarity=0.207 Sum_probs=233.6
Q ss_pred CCCCcHHHHHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh--cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 23 HAQPRPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~--~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.+.|-|||.+++.|+-... .-++||++++||.|||+++|+++.. .+.|+|||||+.+ +.||.+|+.+++. ...+
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VA-lmQW~nEI~~~T~-gslk 259 (791)
T KOG1002|consen 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVA-LMQWKNEIERHTS-GSLK 259 (791)
T ss_pred eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHH-HHHHHHHHHHhcc-CceE
Confidence 4679999999999654321 1247899999999999999888754 3569999999886 6899999999876 5678
Q ss_pred EEEEcCCccccc---cCCCcEEEEchHHhhcccCC-------ChhHHHHHHHHhcCCccEEEEcCCcccCch--HHHHHH
Q 010991 99 ICRFTSDSKERF---RGNAGVVVTTYNMVAFGGKR-------SEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVI 166 (496)
Q Consensus 99 v~~~~g~~~~~~---~~~~~IiItT~~~l~~~~~r-------~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l 166 (496)
|.+|+|.....- -.+.++++|||..+-+...+ .....+....|...+|--||+||||.+++. .-.+.+
T Consensus 260 v~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV 339 (791)
T KOG1002|consen 260 VYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAV 339 (791)
T ss_pred EEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHH
Confidence 889999876531 14589999999988665332 122334455666779999999999999975 344566
Q ss_pred HhccCccEEEEeecCCCCccch--hhh-----------------------------------------------------
Q 010991 167 SLTKSHCKLGLTATLVREDERI--TDL----------------------------------------------------- 191 (496)
Q Consensus 167 ~~l~~~~~L~LTATp~r~d~~~--~~l----------------------------------------------------- 191 (496)
..+.+.+++.|||||.++.--. .-+
T Consensus 340 ~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~I 419 (791)
T KOG1002|consen 340 FALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPI 419 (791)
T ss_pred HhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccc
Confidence 7788999999999999221000 000
Q ss_pred --hhhhCc--------------------------------cc---------------ccc----C---HHHHHhCCCCC-
Q 010991 192 --NFLIGP--------------------------------KL---------------YEA----N---WLDLVKGGFIA- 214 (496)
Q Consensus 192 --~~l~gp--------------------------------~~---------------~~~----~---~~~l~~~g~l~- 214 (496)
+...|| .+ |+. + ....++.|.+-
T Consensus 420 qkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlN 499 (791)
T KOG1002|consen 420 QKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLN 499 (791)
T ss_pred hhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhh
Confidence 000000 00 000 0 00000111110
Q ss_pred -------------------------------cceEEEEEcCCCHHHHHHHHhhhcH------------------------
Q 010991 215 -------------------------------NVQCAEVWCPMTKEFFSEYLKKENS------------------------ 239 (496)
Q Consensus 215 -------------------------------~~~~~~v~~~~~~~~~~~yl~~~~~------------------------ 239 (496)
.-...++.|.+-.+..++|+...-.
T Consensus 500 NYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP 579 (791)
T KOG1002|consen 500 NYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP 579 (791)
T ss_pred hHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc
Confidence 1111223343322222222211100
Q ss_pred -----------------------HHHHHh------hhhCCCcHHHHHHHHHHhh-hcCCCeEEEEeccHHHHHHHHHHcC
Q 010991 240 -----------------------KKKQAL------YVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR 289 (496)
Q Consensus 240 -----------------------~~~~~l------~~~~~~K~~~l~~ll~~~~-~~~g~kiIVF~~~~~~~~~l~~~L~ 289 (496)
+...++ ....+.|++++.+-+.... ..+.-|.|||++++.+++.+.-.|+
T Consensus 580 ~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ 659 (791)
T KOG1002|consen 580 VCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLG 659 (791)
T ss_pred cccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhh
Confidence 000111 1223567777765554332 2445699999999999999999996
Q ss_pred -----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----------------ccCCCCChhHHHHHccCcCcCCCCcc
Q 010991 290 -----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLE 348 (496)
Q Consensus 290 -----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~ 348 (496)
+.-+.|+|+...|...++.|++++++.|+++|- +.+++|||....|+.+|+||+|
T Consensus 660 kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIG---- 735 (791)
T KOG1002|consen 660 KAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIG---- 735 (791)
T ss_pred ccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhc----
Confidence 455899999999999999999999999999887 7789999999999999999999
Q ss_pred ccccCCCCceeEEEEEEEcCCChHHHHHH
Q 010991 349 DRMAGGKEEYNAFFYSLVSTDTQEMFYST 377 (496)
Q Consensus 349 ~~~~~~~~~~~~~vy~lvs~~t~e~~~~~ 377 (496)
|-+.+.|.+++-++|+|+++..
T Consensus 736 -------Q~rPvkvvrf~iEnsiE~kIie 757 (791)
T KOG1002|consen 736 -------QYRPVKVVRFCIENSIEEKIIE 757 (791)
T ss_pred -------CccceeEEEeehhccHHHHHHH
Confidence 6668999999999999998864
No 34
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=245.55 Aligned_cols=303 Identities=17% Similarity=0.183 Sum_probs=213.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-hc---C--CcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI---K--KSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~~---~--~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
...|.+.|.++++.+++++ ++|..++||+|||...+.++. .+ . -.+||++|+++|+.|..+.|..+...-+
T Consensus 81 ~~~PT~IQ~~aiP~~L~g~---dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALGGR---DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred cCCCchhhhhhcchhhCCC---cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 4578999999999988875 999999999999999655543 32 1 2699999999999999999999866566
Q ss_pred CcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHh---
Q 010991 97 DQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL--- 168 (496)
Q Consensus 97 ~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~--- 168 (496)
..++++-|+.... +...++|+|+||+.|....... ..|+-....++|+|||+++.+..|...+..
T Consensus 158 lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T-------kgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk 230 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT-------KGFSLEQLKFLVLDEADRLLDMDFEEELDYILK 230 (476)
T ss_pred eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc-------cCccHHHhHHHhhchHHhhhhhhhHHHHHHHHH
Confidence 7888887875422 3467899999999987553321 112224566899999999999988665554
Q ss_pred -ccC-ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhh
Q 010991 169 -TKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (496)
Q Consensus 169 -l~~-~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~ 246 (496)
++. .+.+++|||......+.. ....-.|+.+.. + . .|- .....++..++
T Consensus 231 ~ip~erqt~LfsATMt~kv~kL~-------------------rasl~~p~~v~~---s---~---ky~-tv~~lkQ~ylf 281 (476)
T KOG0330|consen 231 VIPRERQTFLFSATMTKKVRKLQ-------------------RASLDNPVKVAV---S---S---KYQ-TVDHLKQTYLF 281 (476)
T ss_pred hcCccceEEEEEeecchhhHHHH-------------------hhccCCCeEEec---c---c---hhc-chHHhhhheEe
Confidence 443 367889999875444311 011111111111 0 0 010 11112233334
Q ss_pred hhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 247 ~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
+....|-..+-+|++.+ .|..+||||++....+.++-.|+ +..+||+|++..|...++.|+++ ..++|++|
T Consensus 282 v~~k~K~~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv~T 357 (476)
T KOG0330|consen 282 VPGKDKDTYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILVCT 357 (476)
T ss_pred ccccccchhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEEec
Confidence 44445556777888755 47899999999998888888774 56699999999999999999998 99999999
Q ss_pred e---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHH
Q 010991 322 K---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 383 (496)
Q Consensus 322 ~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l 383 (496)
+ -++-+.+-.+|+||+||++|+|+ .+.+.+||+. .|....++-...+
T Consensus 358 DVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGr-------------sG~~ItlVtq--yDve~~qrIE~~~ 419 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGR-------------SGKAITLVTQ--YDVELVQRIEHAL 419 (476)
T ss_pred chhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCC-------------CcceEEEEeh--hhhHHHHHHHHHH
Confidence 9 13344566789999999999995 4678889987 4443334433333
No 35
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=2.6e-29 Score=260.82 Aligned_cols=277 Identities=17% Similarity=0.143 Sum_probs=186.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.|+|+|.++++.++.+. +.++++|||+|||++++.++.. + ..++|||+|+++|+.|+.+.+..++......
T Consensus 50 ~~~~~Q~~ai~~i~~~~---d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 126 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGY---DTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVR 126 (401)
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCce
Confidence 69999999999988765 8999999999999997655543 2 3479999999999999999998876544445
Q ss_pred EEEEcCCcc-----ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH----HHHHhc
Q 010991 99 ICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISLT 169 (496)
Q Consensus 99 v~~~~g~~~-----~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~~l 169 (496)
+....|+.. ..+....+|+|+|++.+.....+. .+...++++||+||||++.+..|. .++..+
T Consensus 127 ~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~ 198 (401)
T PTZ00424 127 CHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR--------HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKL 198 (401)
T ss_pred EEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC--------CcccccccEEEEecHHHHHhcchHHHHHHHHhhC
Confidence 555555532 112345789999999886543221 112367899999999999876554 333444
Q ss_pred cC-ccEEEEeecCCCCccchhhhh-hhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhh
Q 010991 170 KS-HCKLGLTATLVREDERITDLN-FLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (496)
Q Consensus 170 ~~-~~~L~LTATp~r~d~~~~~l~-~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~ 247 (496)
.. .+.+++|||+...... ... ++..|........+. .+.......+.++ ...
T Consensus 199 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~------------------ 252 (401)
T PTZ00424 199 PPDVQVALFSATMPNEILE--LTTKFMRDPKRILVKKDEL----TLEGIRQFYVAVE--KEE------------------ 252 (401)
T ss_pred CCCcEEEEEEecCCHHHHH--HHHHHcCCCEEEEeCCCCc----ccCCceEEEEecC--hHH------------------
Confidence 33 4789999998632111 111 111121111000000 0111111111111 110
Q ss_pred hCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 248 ~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
.+...+..++.. ....++||||+++.+++.++..|. +..+||++++++|..+++.|++| ++++||+|+
T Consensus 253 ---~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLvaT~ 325 (401)
T PTZ00424 253 ---WKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLITTD 325 (401)
T ss_pred ---HHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEEEcc
Confidence 011223334332 235789999999999999999884 67799999999999999999998 999999999
Q ss_pred ---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 ---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 ---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.+.|...|.||+||+||.|.
T Consensus 326 ~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 326 LLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred cccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 24566789999999999999884
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=1.5e-28 Score=266.28 Aligned_cols=267 Identities=18% Similarity=0.188 Sum_probs=188.7
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
.+||+|+++++.++.+. ++++++|||+|||+++..++....+.+|||+|+++|+.||.+.|... ++ .+..+.+
T Consensus 25 ~~r~~Q~~ai~~il~g~---dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~-gi---~~~~~~s 97 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGR---DCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLAN-GV---AAACLNS 97 (607)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHc-CC---cEEEEcC
Confidence 69999999999988764 89999999999999988887777889999999999999999999874 33 3455555
Q ss_pred Ccccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch------HHHH---HH
Q 010991 105 DSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRK---VI 166 (496)
Q Consensus 105 ~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~~---~l 166 (496)
..... ..+...++++||+.+... .+.+.+...++++||+||||++..- .|+. +.
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~--------~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~ 169 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMD--------NFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLR 169 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcCh--------HHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHH
Confidence 43211 124578999999988642 2345555578999999999998742 2332 22
Q ss_pred HhccCccEEEEeecCCCCccchhhhhhh---hCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHH
Q 010991 167 SLTKSHCKLGLTATLVREDERITDLNFL---IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (496)
Q Consensus 167 ~~l~~~~~L~LTATp~r~d~~~~~l~~l---~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~ 243 (496)
..++...+++||||+...... ++... -.|.++... +-.+.....+. .
T Consensus 170 ~~~p~~~~v~lTAT~~~~~~~--di~~~l~l~~~~~~~~~--------~~r~nl~~~v~-~------------------- 219 (607)
T PRK11057 170 QRFPTLPFMALTATADDTTRQ--DIVRLLGLNDPLIQISS--------FDRPNIRYTLV-E------------------- 219 (607)
T ss_pred HhCCCCcEEEEecCCChhHHH--HHHHHhCCCCeEEEECC--------CCCCcceeeee-e-------------------
Confidence 334456789999998743221 12111 122221110 10010000000 0
Q ss_pred HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEE
Q 010991 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (496)
Q Consensus 244 ~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vl 318 (496)
...+ +..++.+.....+.++||||+++..++.++..|+ +..+||++++++|.++++.|+.+ ++++|
T Consensus 220 -----~~~~---~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VL 290 (607)
T PRK11057 220 -----KFKP---LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIV 290 (607)
T ss_pred -----ccch---HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEE
Confidence 0011 1222322222457899999999999999999984 57899999999999999999998 99999
Q ss_pred EEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 319 FLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 319 v~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
|+|. .++.+.|...|+|++||+||.|.
T Consensus 291 VaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~ 332 (607)
T PRK11057 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGL 332 (607)
T ss_pred EEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCC
Confidence 9998 34566799999999999999985
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=99.97 E-value=1.2e-28 Score=273.24 Aligned_cols=284 Identities=17% Similarity=0.203 Sum_probs=189.7
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
.+|+|+|.++++..+..+ +++++++|||+|||+++..++.. .++++|||+|+++|+.|+.++|.++... +..+.
T Consensus 22 ~~l~p~Q~~ai~~~~~~g--~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~-g~~v~ 98 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDG--KNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEEL-GVRVG 98 (737)
T ss_pred CcCCHHHHHHHHHHHhCC--CcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcC-CCEEE
Confidence 379999999999855544 49999999999999998666543 3578999999999999999999987533 46788
Q ss_pred EEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhc----c
Q 010991 101 RFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----K 170 (496)
Q Consensus 101 ~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l----~ 170 (496)
.++|+.... .....+|+|+||+.+.....+. ..++ .++++||+||+|.+.+. .+..++..+ .
T Consensus 99 ~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~------~~~l--~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 99 ISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG------APWL--DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEeCCcCccccccCCCCEEEECHHHHHHHHhcC------hhhh--hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 888875432 2245789999999886553221 1233 57899999999999854 344444444 3
Q ss_pred CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceE-EEEEcCCCHHHHHHHHhhhcHHHHHHhhhhC
Q 010991 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQC-AEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (496)
Q Consensus 171 ~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~-~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~ 249 (496)
..++++||||+...++ +...++...+...|. |+.. ..+...-.-. +. . ..+ ....
T Consensus 171 ~~qii~lSATl~n~~~----la~wl~~~~~~~~~r---------pv~l~~~v~~~~~~~----~~-~---~~~---~~~~ 226 (737)
T PRK02362 171 DLQVVALSATIGNADE----LADWLDAELVDSEWR---------PIDLREGVFYGGAIH----FD-D---SQR---EVEV 226 (737)
T ss_pred CCcEEEEcccCCCHHH----HHHHhCCCcccCCCC---------CCCCeeeEecCCeec----cc-c---ccc---cCCC
Confidence 3578999999864333 323333222222111 1100 0011000000 00 0 000 0011
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc-----------------------------------------
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------------------------------------- 288 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L----------------------------------------- 288 (496)
+.+...+..+++.+ ..+.++||||+++..++.++..|
T Consensus 227 ~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 227 PSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred ccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 12223333444433 35789999999999877766544
Q ss_pred CCCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------ccC-----------CCCChhHHHHHccCcCcCC
Q 010991 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------ISS-----------HAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 289 ~~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~~-----------~~~s~~~~~Qr~GR~~R~g 344 (496)
++.++||++++.+|..+++.|++| .+++||+|+ ++. .+-+..+|.||+||+||+|
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G-~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDR-LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcC-CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 256789999999999999999998 999999999 111 2346788999999999999
Q ss_pred C
Q 010991 345 G 345 (496)
Q Consensus 345 ~ 345 (496)
.
T Consensus 384 ~ 384 (737)
T PRK02362 384 L 384 (737)
T ss_pred C
Confidence 5
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=1.3e-28 Score=273.77 Aligned_cols=309 Identities=18% Similarity=0.173 Sum_probs=202.3
Q ss_pred CCCCCcHHHHHHHHHHHhc---CCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..++++|+|.+|++.++.. ++..+.++++|||+|||.+++.++.. .+..++|||||++|+.|+.+.|.+++.-.
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~ 527 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANF 527 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 4678999999999998764 23347899999999999998766543 35789999999999999999999876544
Q ss_pred CCcEEEEcCCcccc--------c-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH
Q 010991 96 DDQICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (496)
Q Consensus 96 ~~~v~~~~g~~~~~--------~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (496)
+..+..++|..... + .+..+|+|+|+..+... +.-.++++||+||+|++...... .+
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~-------------v~f~~L~llVIDEahrfgv~~~~-~L 593 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD-------------VKFKDLGLLIIDEEQRFGVKQKE-KL 593 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC-------------CCcccCCEEEeecccccchhHHH-HH
Confidence 45677777654311 1 24689999999765322 11257899999999998655444 44
Q ss_pred Hhcc-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHh
Q 010991 167 SLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (496)
Q Consensus 167 ~~l~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l 245 (496)
..+. ...+|+|||||....-. ..+.....+.+...... + -.++. ....+....
T Consensus 594 ~~~~~~~~vL~~SATpiprtl~-~~l~g~~d~s~I~~~p~-----~-R~~V~--t~v~~~~~~----------------- 647 (926)
T TIGR00580 594 KELRTSVDVLTLSATPIPRTLH-MSMSGIRDLSIIATPPE-----D-RLPVR--TFVMEYDPE----------------- 647 (926)
T ss_pred HhcCCCCCEEEEecCCCHHHHH-HHHhcCCCcEEEecCCC-----C-ccceE--EEEEecCHH-----------------
Confidence 4443 45899999999632111 01111111111111100 0 00111 111111110
Q ss_pred hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHHhcCCCccEE
Q 010991 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (496)
Q Consensus 246 ~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~~~~~vl 318 (496)
.+...+.... .++.+++|||+++..++.+++.|. +..+||+|++.+|.+++++|++| ++++|
T Consensus 648 --------~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~IL 716 (926)
T TIGR00580 648 --------LVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVL 716 (926)
T ss_pred --------HHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEE
Confidence 0111222222 357899999999999999888874 45699999999999999999998 99999
Q ss_pred EEee--------------cc-CC-CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHH
Q 010991 319 FLSK--------------IS-SH-AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 382 (496)
Q Consensus 319 v~s~--------------i~-~~-~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~ 382 (496)
|+|+ +. .. ..+..++.|+.||+||.|+ .++.|.++..+..--.-+.+|-+.
T Consensus 717 VaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~-------------~g~aill~~~~~~l~~~~~~RL~~ 783 (926)
T TIGR00580 717 VCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK-------------KAYAYLLYPHQKALTEDAQKRLEA 783 (926)
T ss_pred EECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC-------------CeEEEEEECCcccCCHHHHHHHHH
Confidence 9999 11 11 1245689999999999884 466777776543222345566666
Q ss_pred HHH---cCccEEEEe
Q 010991 383 LID---QGYSFKVIT 394 (496)
Q Consensus 383 l~~---~g~~~~vi~ 394 (496)
+.+ .|-+|++..
T Consensus 784 ~~~~~~~g~gf~ia~ 798 (926)
T TIGR00580 784 IQEFSELGAGFKIAL 798 (926)
T ss_pred HHHhhcchhhHHHHH
Confidence 643 233455443
No 39
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.97 E-value=1.5e-29 Score=265.06 Aligned_cols=364 Identities=18% Similarity=0.266 Sum_probs=256.0
Q ss_pred CCCCCccccCCCCCCcHHHHHHHHHHHhc----------CCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEE
Q 010991 12 VNPDLNMELKPHAQPRPYQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCL 74 (496)
Q Consensus 12 ~~~~~~~~l~~~~~lr~yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl 74 (496)
..+.+..+-....+|.|||..++++|+.+ ..+.+|||++-||+|||++.++++.++ .+++|||
T Consensus 655 ~e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV 734 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVV 734 (1567)
T ss_pred ccchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEE
Confidence 33444444444568999999999998742 133578999999999999999887653 3589999
Q ss_pred EeChHHHHHHHHHHHHhhC-CCCC-cEEEE--cCCcc--------ccccCCCcEEEEchHHhhcccC-CCh----hHHHH
Q 010991 75 ATNAVSVDQWAFQFKLWST-IQDD-QICRF--TSDSK--------ERFRGNAGVVVTTYNMVAFGGK-RSE----ESEKI 137 (496)
Q Consensus 75 ~P~~~L~~Qw~~e~~~~~~-~~~~-~v~~~--~g~~~--------~~~~~~~~IiItT~~~l~~~~~-r~~----~~~~~ 137 (496)
||..+ +.+|..+|.+|.. +... .+-++ ..-.. ..+.....|.|.-|+|+++... |.. ..+.+
T Consensus 735 ~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f 813 (1567)
T KOG1015|consen 735 CPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIF 813 (1567)
T ss_pred cchHH-HHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHH
Confidence 99997 5679999999963 1211 23232 22111 1133556899999999987632 211 23345
Q ss_pred HHHHhcCCccEEEEcCCcccCch--HHHHHHHhccCccEEEEeecCCCCccch--hhh---------------hhhhCcc
Q 010991 138 IEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI--TDL---------------NFLIGPK 198 (496)
Q Consensus 138 ~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~l~~~~~L~LTATp~r~d~~~--~~l---------------~~l~gp~ 198 (496)
+..+....+++||+||+|.++|. ...+.+..+...++|.|||||++++-.. ..+ +.++.|+
T Consensus 814 ~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI 893 (1567)
T KOG1015|consen 814 NKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPI 893 (1567)
T ss_pred HHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCcc
Confidence 55666678899999999999986 6778889999999999999999664321 011 1122222
Q ss_pred c----------------------c--------ccCHHHHHhCCCCCcceEEEEEcCCCHHH---HHHHHhhh--------
Q 010991 199 L----------------------Y--------EANWLDLVKGGFIANVQCAEVWCPMTKEF---FSEYLKKE-------- 237 (496)
Q Consensus 199 ~----------------------~--------~~~~~~l~~~g~l~~~~~~~v~~~~~~~~---~~~yl~~~-------- 237 (496)
- | +....- -..+|+|...+.+.+.+++-+ |..|+...
T Consensus 894 ~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~V--ltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~e 971 (1567)
T KOG1015|consen 894 QNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTV--LTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSE 971 (1567)
T ss_pred ccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCccc
Confidence 1 1 111111 146788888888888888754 44455300
Q ss_pred c--HHHHHHh----------------------------------------------------------------------
Q 010991 238 N--SKKKQAL---------------------------------------------------------------------- 245 (496)
Q Consensus 238 ~--~~~~~~l---------------------------------------------------------------------- 245 (496)
. .....++
T Consensus 972 g~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Dess 1051 (1567)
T KOG1015|consen 972 GGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESS 1051 (1567)
T ss_pred cccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccc
Confidence 0 0000000
Q ss_pred ---------------------------------------------------------------------hhhCCCcHHHH
Q 010991 246 ---------------------------------------------------------------------YVMNPNKFRAC 256 (496)
Q Consensus 246 ---------------------------------------------------------------------~~~~~~K~~~l 256 (496)
....++|+-+|
T Consensus 1052 s~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLL 1131 (1567)
T KOG1015|consen 1052 SGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILL 1131 (1567)
T ss_pred cccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehH
Confidence 01235677788
Q ss_pred HHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC---------------------------CCeEEcCCCHHHHHHHHHHH
Q 010991 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---------------------------KPMIYGATSHVERTKILQAF 309 (496)
Q Consensus 257 ~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~---------------------------~~~i~G~~~~~eR~~il~~F 309 (496)
-.||...+ .=|+|+|||+++...++.|..+|. +..|+|+++..+|..+..+|
T Consensus 1132 leIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1132 LEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 88888777 779999999999999999999882 35589999999999999999
Q ss_pred hcCC--CccEEEEee----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCCh
Q 010991 310 KCSR--DLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 371 (496)
Q Consensus 310 ~~~~--~~~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~ 371 (496)
++-. ..+++++|+ |++..|||.-..|.+=|+.|-| |.+.||+|+|+..+|+
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfG-----------QtKPvyiYRfiAqGTm 1279 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFG-----------QTKPVYIYRFIAQGTM 1279 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhc-----------CcCceeehhhhhcccH
Confidence 9732 566777777 7889999999999999999999 6778999999999999
Q ss_pred HHHHHHHHHHHHHHcCccEEEE
Q 010991 372 EMFYSTKRQQFLIDQGYSFKVI 393 (496)
Q Consensus 372 e~~~~~~r~~~l~~~g~~~~vi 393 (496)
|++++.++ ...|+.+++|+
T Consensus 1280 EeKIYkRQ---VTKqsls~RVV 1298 (1567)
T KOG1015|consen 1280 EEKIYKRQ---VTKQSLSFRVV 1298 (1567)
T ss_pred HHHHHHHH---HhHhhhhhhhh
Confidence 99887543 33445555554
No 40
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.9e-29 Score=266.08 Aligned_cols=304 Identities=19% Similarity=0.159 Sum_probs=212.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH-HHhcC--C----c-EEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA-ACRIK--K----S-CLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~-~~~~~--~----~-~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..+.|+|..+++.++.+. +.+..++||+|||+..+.+ +..+. . . +||++||++|+.|..+++..+....
T Consensus 50 ~~pt~IQ~~~IP~~l~g~---Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 50 EEPTPIQLAAIPLILAGR---DVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 468999999999988874 9999999999999995444 44333 1 2 8999999999999999999987655
Q ss_pred -CCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH---
Q 010991 96 -DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI--- 166 (496)
Q Consensus 96 -~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l--- 166 (496)
...+..+.|+... .+...++|+|+||+.|.....+. .+......++|+|||++|.+..|...+
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--------~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I 198 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--------KLDLSGVETLVLDEADRMLDMGFIDDIEKI 198 (513)
T ss_pred CCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--------CcchhhcCEEEeccHhhhhcCCCHHHHHHH
Confidence 5677777776432 23445999999999997654432 233367889999999999998665444
Q ss_pred -HhccC-ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHH
Q 010991 167 -SLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (496)
Q Consensus 167 -~~l~~-~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~ 244 (496)
..++. .+.+++|||... .+..+.. .++.++....+..+.... ......+..
T Consensus 199 ~~~~p~~~qtllfSAT~~~---~i~~l~~-----------------~~l~~p~~i~v~~~~~~~-------~~~~i~q~~ 251 (513)
T COG0513 199 LKALPPDRQTLLFSATMPD---DIRELAR-----------------RYLNDPVEIEVSVEKLER-------TLKKIKQFY 251 (513)
T ss_pred HHhCCcccEEEEEecCCCH---HHHHHHH-----------------HHccCCcEEEEccccccc-------cccCceEEE
Confidence 44444 578999999864 1222211 111111121121000000 000000111
Q ss_pred hhhhCC-CcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEE
Q 010991 245 LYVMNP-NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (496)
Q Consensus 245 l~~~~~-~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vl 318 (496)
+.+... .|+..+..|+.... ..++||||+++..++.++..|. +..+||++++++|.++++.|++| ++++|
T Consensus 252 ~~v~~~~~k~~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vL 327 (513)
T COG0513 252 LEVESEEEKLELLLKLLKDED---EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVL 327 (513)
T ss_pred EEeCCHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEE
Confidence 112222 37778888887653 4479999999999999999984 67799999999999999999998 99999
Q ss_pred EEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHH
Q 010991 319 FLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 383 (496)
Q Consensus 319 v~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l 383 (496)
|+|+ -++.+.++..|+||+||+||+|. ....++|++. ..|.....+-...+
T Consensus 328 VaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~-------------~G~ai~fv~~-~~e~~~l~~ie~~~ 393 (513)
T COG0513 328 VATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR-------------KGVAISFVTE-EEEVKKLKRIEKRL 393 (513)
T ss_pred EEechhhccCCccccceeEEccCCCCHHHheeccCccccCCC-------------CCeEEEEeCc-HHHHHHHHHHHHHH
Confidence 9999 34666789999999999999995 3567777775 22444444444443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.96 E-value=1.3e-27 Score=259.37 Aligned_cols=267 Identities=19% Similarity=0.196 Sum_probs=191.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
++||+|.++++.++.+. ++++++|||+|||+++..++....+.++||+|+.+|+.|+.+.+... ++ .+..+++
T Consensus 13 ~fr~~Q~~~i~~il~g~---dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~-gi---~~~~~~s 85 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGR---DVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAA-GV---AAAYLNS 85 (591)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHc-CC---cEEEEeC
Confidence 68999999999988775 89999999999999988877777788999999999999999999874 33 4666666
Q ss_pred Ccccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc--h----HHHHH---H
Q 010991 105 DSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--H----MFRKV---I 166 (496)
Q Consensus 105 ~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~----~~~~~---l 166 (496)
+.... ..+..+|+++|++.+... .+...+...++++||+||||++.. . .|+++ .
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--------~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQD--------YFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--------HHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 54311 235678999999998643 234555567899999999999874 2 33333 2
Q ss_pred HhccCccEEEEeecCCCCccchhhhhhhhC---ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHH
Q 010991 167 SLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (496)
Q Consensus 167 ~~l~~~~~L~LTATp~r~d~~~~~l~~l~g---p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~ 243 (496)
..++...+++||||+...... ++...++ +..+. .++-.+.....+..
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~--~i~~~l~~~~~~~~~--------~~~~r~nl~~~v~~-------------------- 207 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQ--DIRELLRLADANEFI--------TSFDRPNLRFSVVK-------------------- 207 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHH--HHHHHcCCCCCCeEe--------cCCCCCCcEEEEEe--------------------
Confidence 334455689999998643221 2222221 11111 11111111111110
Q ss_pred HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEE
Q 010991 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (496)
Q Consensus 244 ~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vl 318 (496)
...+...+..++.. ..+.++||||+++..++.+++.|. +..+||+++.++|..+++.|.+| ++++|
T Consensus 208 -----~~~~~~~l~~~l~~---~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vl 278 (591)
T TIGR01389 208 -----KNNKQKFLLDYLKK---HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVM 278 (591)
T ss_pred -----CCCHHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEE
Confidence 01122223333333 337889999999999999999984 46799999999999999999998 89999
Q ss_pred EEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 319 FLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 319 v~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
|+|. ..+.+.|...|+|++||+||.|.
T Consensus 279 VaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 279 VATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGL 320 (591)
T ss_pred EEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCC
Confidence 9999 34567899999999999999985
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=1.8e-27 Score=266.75 Aligned_cols=289 Identities=17% Similarity=0.207 Sum_probs=185.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----------CCcEEEEEeChHHHHHHHHHHH--
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------KKSCLCLATNAVSVDQWAFQFK-- 89 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----------~~~~LIl~P~~~L~~Qw~~e~~-- 89 (496)
..|+|+|.+|++.++.+. +++|++|||+|||++++.++.. + +..+|||+|+++|+.|+.+.+.
T Consensus 31 ~~~tpiQ~~Ai~~il~g~---nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGK---NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 369999999999887664 9999999999999997665432 1 1259999999999999987654
Q ss_pred -----Hhh-----CCCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCC
Q 010991 90 -----LWS-----TIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (496)
Q Consensus 90 -----~~~-----~~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEa 154 (496)
.+. .++...+.+.+|+.... +...++|+||||+++....... .....+ ..+++||+||+
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~----~~~~~l--~~l~~VVIDE~ 181 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP----KFREKL--RTVKWVIVDEI 181 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh----hHHHHH--hcCCEEEEech
Confidence 332 23356778888885422 2356899999999987554321 222344 57899999999
Q ss_pred cccCch----HHHHHH----Hhc-cCccEEEEeecCCCCccchhhhhhhhCccccc--cCHHHHHhCCCCCcceEEEEEc
Q 010991 155 HVVPAH----MFRKVI----SLT-KSHCKLGLTATLVREDERITDLNFLIGPKLYE--ANWLDLVKGGFIANVQCAEVWC 223 (496)
Q Consensus 155 H~~~~~----~~~~~l----~~l-~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~--~~~~~l~~~g~l~~~~~~~v~~ 223 (496)
|.+.+. .+...+ ... ...+++|||||+...+. +..+++..... .....++...+..+... .+.+
T Consensus 182 H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~----va~~L~~~~~~~~~r~~~iv~~~~~k~~~i-~v~~ 256 (876)
T PRK13767 182 HSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEE----VAKFLVGYEDDGEPRDCEIVDARFVKPFDI-KVIS 256 (876)
T ss_pred hhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHH----HHHHhcCccccCCCCceEEEccCCCccceE-EEec
Confidence 999853 222222 223 23578999999854222 11112111000 00000111112222211 1222
Q ss_pred CCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----------CCe
Q 010991 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----------KPM 292 (496)
Q Consensus 224 ~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----------~~~ 292 (496)
+...-. . . ...... ..+...|.+.. ..+.++||||+++..++.++..|. +.+
T Consensus 257 p~~~l~-~--~-~~~~~~-----------~~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 257 PVDDLI-H--T-PAEEIS-----------EALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred cCcccc-c--c-ccchhH-----------HHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 211000 0 0 000000 01112222222 346789999999999999888763 567
Q ss_pred EEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCC
Q 010991 293 IYGATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 293 i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g 344 (496)
+||++++++|..+++.|++| .+++||+|+ ..+.+.|...|+||+||+||.+
T Consensus 320 hHg~ls~~~R~~ve~~fk~G-~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRG-ELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcC-CCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 89999999999999999999 999999998 3456678899999999999975
No 43
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=2e-27 Score=269.58 Aligned_cols=321 Identities=17% Similarity=0.173 Sum_probs=206.4
Q ss_pred cCCCCCCcHHHHHHHHHHHhc---CCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 20 LKPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
-...+.+.|.|.+|++.++.. .++.+.++++|||+|||.+++.++. ..+..++|||||++|+.|+.+.|.+++.
T Consensus 595 ~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~ 674 (1147)
T PRK10689 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFA 674 (1147)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhc
Confidence 345678999999999998775 2335889999999999998765543 2367899999999999999999998654
Q ss_pred CCCCcEEEEcCCcccc-----c----cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH
Q 010991 94 IQDDQICRFTSDSKER-----F----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~~-----~----~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~ 164 (496)
-.+..+..++|..... + .+..+|+|+|++.+.... .-.+++++|+||+|++.... ..
T Consensus 675 ~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v-------------~~~~L~lLVIDEahrfG~~~-~e 740 (1147)
T PRK10689 675 NWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDV-------------KWKDLGLLIVDEEHRFGVRH-KE 740 (1147)
T ss_pred cCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCC-------------CHhhCCEEEEechhhcchhH-HH
Confidence 3345666666653211 1 246899999998764221 11578999999999995443 34
Q ss_pred HHHhcc-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHH
Q 010991 165 VISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (496)
Q Consensus 165 ~l~~l~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~ 243 (496)
.+..++ ...+|+|||||...... ..+..+..+.....+.. .-+ ++. .+.......
T Consensus 741 ~lk~l~~~~qvLl~SATpiprtl~-l~~~gl~d~~~I~~~p~-----~r~-~v~--~~~~~~~~~--------------- 796 (1147)
T PRK10689 741 RIKAMRADVDILTLTATPIPRTLN-MAMSGMRDLSIIATPPA-----RRL-AVK--TFVREYDSL--------------- 796 (1147)
T ss_pred HHHhcCCCCcEEEEcCCCCHHHHH-HHHhhCCCcEEEecCCC-----CCC-Cce--EEEEecCcH---------------
Confidence 455444 45889999999632111 01111112222111110 000 111 011111000
Q ss_pred HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHHhcCCCcc
Q 010991 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLN 316 (496)
Q Consensus 244 ~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~~~~~ 316 (496)
.....++... .++.+++|||+++..++.+++.|. +..+||+|++.+|.+++++|++| +++
T Consensus 797 ----------~~k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~ 863 (1147)
T PRK10689 797 ----------VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFN 863 (1147)
T ss_pred ----------HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCC
Confidence 0111222222 246799999999999888888773 56789999999999999999998 999
Q ss_pred EEEEee--------------cc---CCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHH
Q 010991 317 TIFLSK--------------IS---SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 379 (496)
Q Consensus 317 vlv~s~--------------i~---~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r 379 (496)
+||+|+ ++ .++ +..+|.|+.||+||.+. .+++|.+...+..-...+.+|
T Consensus 864 VLVaTdIierGIDIP~v~~VIi~~ad~f-glaq~~Qr~GRvGR~g~-------------~g~a~ll~~~~~~~~~~~~~r 929 (1147)
T PRK10689 864 VLVCTTIIETGIDIPTANTIIIERADHF-GLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQKR 929 (1147)
T ss_pred EEEECchhhcccccccCCEEEEecCCCC-CHHHHHHHhhccCCCCC-------------ceEEEEEeCCCcccCHHHHHH
Confidence 999999 21 233 45689999999999885 466776665443323345566
Q ss_pred HHHHH---HcCccEEEEeCCCCCCCCCCC
Q 010991 380 QQFLI---DQGYSFKVITSLPPPDSGADL 405 (496)
Q Consensus 380 ~~~l~---~~g~~~~vi~~~~~~~~~~~~ 405 (496)
.+.+. +.|-+|++.....++...+++
T Consensus 930 l~~~~~~~~lg~gf~~a~~dl~~rg~g~~ 958 (1147)
T PRK10689 930 LEAIASLEDLGAGFALATHDLEIRGAGEL 958 (1147)
T ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCccC
Confidence 55554 445566665433333333333
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=2.2e-27 Score=260.04 Aligned_cols=275 Identities=17% Similarity=0.175 Sum_probs=182.2
Q ss_pred CCCCCcHHHHHHHHHHHhcC---CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 22 PHAQPRPYQEKSLSKMFGNG---RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~---~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..++|+++|+++++.+.... ...+.++.+|||+|||++++.++.. .+..++||+||.+|+.|+.+.|++++...
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 46789999999999987652 2247899999999999998766543 35589999999999999999999987544
Q ss_pred CCcEEEEcCCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH
Q 010991 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (496)
Q Consensus 96 ~~~v~~~~g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (496)
+..+..++|+.... ..+..+|+|+|+..+... -.+ .++++||+||+|++.......+.
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-----------v~~--~~l~lvVIDE~Hrfg~~qr~~l~ 404 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD-----------VEF--HNLGLVIIDEQHRFGVEQRLALR 404 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc-----------chh--cccceEEEechhhhhHHHHHHHH
Confidence 56788899886521 235689999999877422 012 67899999999998765555444
Q ss_pred HhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhh
Q 010991 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (496)
Q Consensus 167 ~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~ 246 (496)
..-...+.|++||||....- .+ ...|...... ...+ ..+ -.+. ...++...
T Consensus 405 ~~~~~~~iL~~SATp~prtl---~~-~~~g~~~~s~-i~~~-p~~-r~~i--~~~~~~~~-------------------- 455 (681)
T PRK10917 405 EKGENPHVLVMTATPIPRTL---AM-TAYGDLDVSV-IDEL-PPG-RKPI--TTVVIPDS-------------------- 455 (681)
T ss_pred hcCCCCCEEEEeCCCCHHHH---HH-HHcCCCceEE-EecC-CCC-CCCc--EEEEeCcc--------------------
Confidence 43334689999999963211 11 0111110000 0000 000 0011 11111100
Q ss_pred hhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHH--------HHHHHHHHc-------CCCeEEcCCCHHHHHHHHHHHhc
Q 010991 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLF--------ALTEYAMKL-------RKPMIYGATSHVERTKILQAFKC 311 (496)
Q Consensus 247 ~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~--------~~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~ 311 (496)
.+..+++.+.... ..|++++|||+.++ .++.+++.| ++..+||+|++++|.+++++|++
T Consensus 456 ----~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 529 (681)
T PRK10917 456 ----RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA 529 (681)
T ss_pred ----cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 0112233333333 46889999998643 233333333 36779999999999999999999
Q ss_pred CCCccEEEEee---------------ccCCC-CChhHHHHHccCcCcCCC
Q 010991 312 SRDLNTIFLSK---------------ISSHA-GSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 312 ~~~~~vlv~s~---------------i~~~~-~s~~~~~Qr~GR~~R~g~ 345 (496)
| ++++||+|+ +.... ....++.|+.||+||.|.
T Consensus 530 g-~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 578 (681)
T PRK10917 530 G-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAA 578 (681)
T ss_pred C-CCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCC
Confidence 8 999999999 11111 245789999999999884
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=2.5e-27 Score=262.28 Aligned_cols=281 Identities=18% Similarity=0.236 Sum_probs=182.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-h---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.+|+|+|.+++..++..+ ++.++++|||+|||+++..++. . .+.++|+|+|+++|+.|+.++|..|... +..|
T Consensus 22 ~~l~~~Q~~ai~~~~~~g--~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~-g~~v 98 (720)
T PRK00254 22 EELYPPQAEALKSGVLEG--KNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKL-GLRV 98 (720)
T ss_pred CCCCHHHHHHHHHHHhCC--CcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhc-CCEE
Confidence 479999999999755554 4999999999999999855543 2 3568999999999999999999987532 4578
Q ss_pred EEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhcc-Cc
Q 010991 100 CRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SH 172 (496)
Q Consensus 100 ~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~-~~ 172 (496)
..++|+.... ..+.++|+|+|++.+.....+.. .++ .++++||+||+|.+.+. .+..++..+. ..
T Consensus 99 ~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~------~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 99 AMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS------SWI--KDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred EEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc------hhh--hcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 8888875432 23457899999998865533211 233 57899999999999754 4444555543 35
Q ss_pred cEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEE-EEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCC
Q 010991 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA-EVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (496)
Q Consensus 173 ~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~-~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~ 251 (496)
++++||||+.... ++...++...+...+. ++... .+..... .+. ......+.. ..
T Consensus 171 qiI~lSATl~n~~----~la~wl~~~~~~~~~r---------pv~l~~~~~~~~~-----~~~-~~~~~~~~~-----~~ 226 (720)
T PRK00254 171 QILGLSATVGNAE----ELAEWLNAELVVSDWR---------PVKLRKGVFYQGF-----LFW-EDGKIERFP-----NS 226 (720)
T ss_pred cEEEEEccCCCHH----HHHHHhCCccccCCCC---------CCcceeeEecCCe-----eec-cCcchhcch-----HH
Confidence 7899999996432 3333333322211111 11000 0100000 000 000000000 00
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc--------------------------------------CCCeE
Q 010991 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL--------------------------------------RKPMI 293 (496)
Q Consensus 252 K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L--------------------------------------~~~~i 293 (496)
....+..++ ..+.++||||+++..++.++..| ++.++
T Consensus 227 ~~~~~~~~i-----~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~h 301 (720)
T PRK00254 227 WESLVYDAV-----KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFH 301 (720)
T ss_pred HHHHHHHHH-----HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEe
Confidence 001222222 34779999999998876654333 36789
Q ss_pred EcCCCHHHHHHHHHHHhcCCCccEEEEee-------------ccC------CCC----ChhHHHHHccCcCcCCC
Q 010991 294 YGATSHVERTKILQAFKCSRDLNTIFLSK-------------ISS------HAG----SRRQEAQRLGRILRAKG 345 (496)
Q Consensus 294 ~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~~------~~~----s~~~~~Qr~GR~~R~g~ 345 (496)
||++++++|..+.+.|++| .+++||+|. ++. .++ +...|.||+||+||+|.
T Consensus 302 Hagl~~~eR~~ve~~F~~G-~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 302 HAGLGRTERVLIEDAFREG-LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 9999999999999999998 999999998 111 111 34588999999999984
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.96 E-value=5.7e-27 Score=257.71 Aligned_cols=274 Identities=16% Similarity=0.148 Sum_probs=185.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEc
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (496)
..+||+|.++++.++.+. ++++++|||+|||+++..++....+.+|||+|+++|+.++...+... ++ .+..+.
T Consensus 459 ~sFRp~Q~eaI~aiL~Gr---DVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~-GI---~Aa~L~ 531 (1195)
T PLN03137 459 HSFRPNQREIINATMSGY---DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQA-NI---PAASLS 531 (1195)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhC-CC---eEEEEE
Confidence 479999999999988775 99999999999999988888777889999999999998766666553 33 345555
Q ss_pred CCccc-----cc------cCCCcEEEEchHHhhcccCCChhHHHHHHHHh-cCCccEEEEcCCcccCch------HHHH-
Q 010991 104 SDSKE-----RF------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR-NREWGLLLMDEVHVVPAH------MFRK- 164 (496)
Q Consensus 104 g~~~~-----~~------~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~-~~~~~~vIlDEaH~~~~~------~~~~- 164 (496)
++... .+ .+..+|+++||+.|..... .......+. ...+.+|||||||++..- .|+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~----ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L 607 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDS----LLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL 607 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchH----HHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHH
Confidence 54321 11 1567899999999864210 111122221 245789999999998742 3332
Q ss_pred --HHHhccCccEEEEeecCCCCccchhhhhhh---hCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH
Q 010991 165 --VISLTKSHCKLGLTATLVREDERITDLNFL---IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (496)
Q Consensus 165 --~l~~l~~~~~L~LTATp~r~d~~~~~l~~l---~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~ 239 (496)
+...++...+++||||....... ++... ..+.++. .++-.+-....+. +....
T Consensus 608 ~~Lr~~fp~vPilALTATAT~~V~e--DI~~~L~l~~~~vfr--------~Sf~RpNL~y~Vv-~k~kk----------- 665 (1195)
T PLN03137 608 GILKQKFPNIPVLALTATATASVKE--DVVQALGLVNCVVFR--------QSFNRPNLWYSVV-PKTKK----------- 665 (1195)
T ss_pred HHHHHhCCCCCeEEEEecCCHHHHH--HHHHHcCCCCcEEee--------cccCccceEEEEe-ccchh-----------
Confidence 22344556789999998643221 22222 2222222 1222221111111 10000
Q ss_pred HHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCC
Q 010991 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (496)
Q Consensus 240 ~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~ 314 (496)
....+..++... ..+...||||.++..++.++..|. +..+||++++++|..+++.|.+| +
T Consensus 666 ------------~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-e 730 (1195)
T PLN03137 666 ------------CLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-E 730 (1195)
T ss_pred ------------HHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-C
Confidence 001122222211 235678999999999999999984 67899999999999999999998 9
Q ss_pred ccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 315 LNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 315 ~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+++||+|. .++.+.|...|+|++||+||.|.
T Consensus 731 i~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~ 776 (1195)
T PLN03137 731 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 776 (1195)
T ss_pred CcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCC
Confidence 99999999 35666799999999999999996
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=4.9e-27 Score=258.60 Aligned_cols=281 Identities=17% Similarity=0.188 Sum_probs=186.6
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
..++|+|+|.++++.+..+. +.++++|||+|||+++..++.. .++++++|+|+++|+.|+.+++.++... +..
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~---nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~-g~~ 94 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGE---NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSL-GMR 94 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCC---cEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhc-CCe
Confidence 46789999999999876554 8999999999999998766544 2578999999999999999999986532 456
Q ss_pred EEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhcc--
Q 010991 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-- 170 (496)
Q Consensus 99 v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~-- 170 (496)
+...+|+.... .....+|+|+|++.+.....+.. ..+ .++++||+||+|.+.+. .+..++..++
T Consensus 95 v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~------~~l--~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~ 166 (674)
T PRK01172 95 VKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP------YII--NDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166 (674)
T ss_pred EEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh------hHH--hhcCEEEEecchhccCCCccHHHHHHHHHHHhc
Confidence 77777764422 22457999999988765433221 223 57899999999999754 3444444332
Q ss_pred --CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhh
Q 010991 171 --SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (496)
Q Consensus 171 --~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~ 248 (496)
..++++||||+...+ ++...++...+...+. -.+......... . .+. ...
T Consensus 167 ~~~~riI~lSATl~n~~----~la~wl~~~~~~~~~r-------~vpl~~~i~~~~--~----~~~-~~~---------- 218 (674)
T PRK01172 167 NPDARILALSATVSNAN----ELAQWLNASLIKSNFR-------PVPLKLGILYRK--R----LIL-DGY---------- 218 (674)
T ss_pred CcCCcEEEEeCccCCHH----HHHHHhCCCccCCCCC-------CCCeEEEEEecC--e----eee-ccc----------
Confidence 347899999986432 3333333322221110 001111111100 0 000 000
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc------------------------------CCCeEEcCCC
Q 010991 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------RKPMIYGATS 298 (496)
Q Consensus 249 ~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L------------------------------~~~~i~G~~~ 298 (496)
...+..+ ..++.... ..+.++||||+++..++.++..| ++.++||+++
T Consensus 219 ~~~~~~~-~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 219 ERSQVDI-NSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred ccccccH-HHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC
Confidence 0001111 12222221 45789999999999988887765 2456899999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEee-------------ccC----------CCCChhHHHHHccCcCcCCC
Q 010991 299 HVERTKILQAFKCSRDLNTIFLSK-------------ISS----------HAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 299 ~~eR~~il~~F~~~~~~~vlv~s~-------------i~~----------~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+++|..+.+.|++| .+++||+|+ ++. .+.+..++.||+||+||.|.
T Consensus 297 ~~eR~~ve~~f~~g-~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~ 365 (674)
T PRK01172 297 NEQRRFIEEMFRNR-YIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGY 365 (674)
T ss_pred HHHHHHHHHHHHcC-CCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 99999999999998 999999998 111 12477889999999999995
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=1.2e-26 Score=252.54 Aligned_cols=276 Identities=16% Similarity=0.156 Sum_probs=183.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcC---CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 21 KPHAQPRPYQEKSLSKMFGNG---RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~~---~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
...++|+++|+++++.++... .+.+.++.+|||+|||++++.++.. .+..++|++||++|+.||.++|.+++.-
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 346789999999999988652 2236799999999999997665543 3568999999999999999999998754
Q ss_pred CCCcEEEEcCCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHH
Q 010991 95 QDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~ 165 (496)
.+..+..++|+.... ..+..+|+|+|+..+... +.-.++++||+||+|++.......+
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-------------~~~~~l~lvVIDEaH~fg~~qr~~l 377 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-------------VEFKRLALVIIDEQHRFGVEQRKKL 377 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-------------ccccccceEEEechhhccHHHHHHH
Confidence 456788888875421 135679999999877532 1126789999999999876655545
Q ss_pred HHhcc---CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHH
Q 010991 166 ISLTK---SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (496)
Q Consensus 166 l~~l~---~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~ 242 (496)
..... ..+.|++||||....-. + ...+..- ....+....+ -.+. ...++...
T Consensus 378 ~~~~~~~~~~~~l~~SATp~prtl~---l-~~~~~l~--~~~i~~~p~~-r~~i--~~~~~~~~---------------- 432 (630)
T TIGR00643 378 REKGQGGFTPHVLVMSATPIPRTLA---L-TVYGDLD--TSIIDELPPG-RKPI--TTVLIKHD---------------- 432 (630)
T ss_pred HHhcccCCCCCEEEEeCCCCcHHHH---H-HhcCCcc--eeeeccCCCC-CCce--EEEEeCcc----------------
Confidence 54444 56789999999642111 0 1111100 0000000000 0011 11111110
Q ss_pred HHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccH--------HHHHHHHHHc-------CCCeEEcCCCHHHHHHHHH
Q 010991 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL--------FALTEYAMKL-------RKPMIYGATSHVERTKILQ 307 (496)
Q Consensus 243 ~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~--------~~~~~l~~~L-------~~~~i~G~~~~~eR~~il~ 307 (496)
.+-.++..+.+.. ..+++++|||..+ ..++.+++.| ++..+||++++++|.++++
T Consensus 433 --------~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 502 (630)
T TIGR00643 433 --------EKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVME 502 (630)
T ss_pred --------hHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 0112233333333 3578999999875 2344444444 2578999999999999999
Q ss_pred HHhcCCCccEEEEee---------------ccCCC-CChhHHHHHccCcCcCCC
Q 010991 308 AFKCSRDLNTIFLSK---------------ISSHA-GSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 308 ~F~~~~~~~vlv~s~---------------i~~~~-~s~~~~~Qr~GR~~R~g~ 345 (496)
.|++| ++++||+|+ +.... .+..++.|+.||+||.|.
T Consensus 503 ~F~~g-~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 555 (630)
T TIGR00643 503 EFREG-EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDH 555 (630)
T ss_pred HHHcC-CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCC
Confidence 99998 999999999 11211 256789999999999884
No 49
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=6.7e-26 Score=239.21 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=115.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 19 ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 19 ~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
.+.....||+||.+.+..++ +. +.||++|||+|||.+|+.++... +.++++++|++-|+.|....|..++
T Consensus 56 ~~p~~~~lR~YQ~eivq~AL-gk---Ntii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~- 130 (746)
T KOG0354|consen 56 IYPTNLELRNYQEELVQPAL-GK---NTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYL- 130 (746)
T ss_pred cccCcccccHHHHHHhHHhh-cC---CeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhcc-
Confidence 34567899999999999999 43 89999999999999998888653 4589999999999999998888864
Q ss_pred CCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-hHHHHHHH
Q 010991 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRKVIS 167 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~~l~ 167 (496)
.+ ..+....|+... .+....+|+|.|++.+.++.+..... .| ..|.++|+||||+... ..|..++.
T Consensus 131 ~~-~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~-----~l--s~fs~iv~DE~Hra~kn~~Y~~Vmr 202 (746)
T KOG0354|consen 131 IP-YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD-----EL--SDFSLIVFDECHRTSKNHPYNNIMR 202 (746)
T ss_pred Cc-ccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc-----cc--ceEEEEEEcccccccccccHHHHHH
Confidence 45 344444444221 12356889999999999987754221 12 5799999999999874 45665553
Q ss_pred hc-----cCccEEEEeecCCC
Q 010991 168 LT-----KSHCKLGLTATLVR 183 (496)
Q Consensus 168 ~l-----~~~~~L~LTATp~r 183 (496)
.+ ...++|||||||..
T Consensus 203 ~~l~~k~~~~qILgLTASpG~ 223 (746)
T KOG0354|consen 203 EYLDLKNQGNQILGLTASPGS 223 (746)
T ss_pred HHHHhhhccccEEEEecCCCc
Confidence 32 23489999999983
No 50
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=229.49 Aligned_cols=308 Identities=17% Similarity=0.162 Sum_probs=201.5
Q ss_pred CCCcHHHHHHHHHHHhcC------CCcceEEEeCCCCChHHHHHHH-HHhcC------CcEEEEEeChHHHHHHHHHHHH
Q 010991 24 AQPRPYQEKSLSKMFGNG------RARSGIIVLPCGAGKSLVGVSA-ACRIK------KSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~------~~~~~il~~~tG~GKTl~~i~~-~~~~~------~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..++|.|...++++|... +.++.++.+|||+|||++...+ +..+. -+++||+|+++|+.|.++.|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 478999999999886432 4678999999999999995444 43332 2799999999999999999999
Q ss_pred hhCCCCCcEEEEcCCcccc------ccC----CCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch
Q 010991 91 WSTIQDDQICRFTSDSKER------FRG----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (496)
Q Consensus 91 ~~~~~~~~v~~~~g~~~~~------~~~----~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (496)
|+.-.+..|+..+|...-. ... ..+|+|+||+.|..+.... ..|.-.+..++|+|||+++.+.
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-------k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-------KSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-------CCcchhhceEEEechHHHHHHH
Confidence 9877777888888875421 112 3489999999997654321 1222256779999999999998
Q ss_pred HHHHHHHhccC----ccEEEE---------eecCCCCc-------cchhhhhhhhCccccccCHHHHHhCCCCCcceEEE
Q 010991 161 MFRKVISLTKS----HCKLGL---------TATLVRED-------ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE 220 (496)
Q Consensus 161 ~~~~~l~~l~~----~~~L~L---------TATp~r~d-------~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~ 220 (496)
+|+.-+..+.. ..++.+ +++|.-.. .....+..++-+-.+...+..+..-..--| +...
T Consensus 311 sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P-rl~~ 389 (620)
T KOG0350|consen 311 SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP-RLFH 389 (620)
T ss_pred HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC-ceEE
Confidence 77755544322 111111 12222111 111122222222222223333322111111 1111
Q ss_pred EEc------CCCHHHHHHHHhhhcHHHHHHhhhhCC-CcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC----
Q 010991 221 VWC------PMTKEFFSEYLKKENSKKKQALYVMNP-NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---- 289 (496)
Q Consensus 221 v~~------~~~~~~~~~yl~~~~~~~~~~l~~~~~-~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~---- 289 (496)
+.. .+++.. ..+ ..+..+ -|--.+..+|... ...++|+|++++..+..++..|+
T Consensus 390 v~~~~~~ryslp~~l-~~~-----------~vv~~~~~kpl~~~~lI~~~---k~~r~lcf~~S~~sa~Rl~~~L~v~~~ 454 (620)
T KOG0350|consen 390 VSKPLIGRYSLPSSL-SHR-----------LVVTEPKFKPLAVYALITSN---KLNRTLCFVNSVSSANRLAHVLKVEFC 454 (620)
T ss_pred eecccceeeecChhh-hhc-----------eeecccccchHhHHHHHHHh---hcceEEEEecchHHHHHHHHHHHHHhc
Confidence 111 111111 111 111122 2334555666543 47899999999999999999885
Q ss_pred -----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccc
Q 010991 290 -----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLED 349 (496)
Q Consensus 290 -----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~ 349 (496)
+-.+.|+.+...|...++.|..| ++++||+|+ -.+.+.+..+|+||+||++|+|+
T Consensus 455 ~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq---- 529 (620)
T KOG0350|consen 455 SDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQ---- 529 (620)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccC----
Confidence 45589999999999999999999 999999999 24566688899999999999996
Q ss_pred cccCCCCceeEEEEEEEcC
Q 010991 350 RMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 350 ~~~~~~~~~~~~vy~lvs~ 368 (496)
.++.|+|++.
T Consensus 530 ---------~G~a~tll~~ 539 (620)
T KOG0350|consen 530 ---------DGYAITLLDK 539 (620)
T ss_pred ---------CceEEEeecc
Confidence 4678988874
No 51
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.94 E-value=8e-26 Score=246.73 Aligned_cols=325 Identities=17% Similarity=0.167 Sum_probs=208.0
Q ss_pred CCCCcHHHHHHHHHHHhc---C----CCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHH
Q 010991 23 HAQPRPYQEKSLSKMFGN---G----RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~---~----~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..-+|+||..|+.+++.. + ..++|+|+++||+|||++++.++..+ ..++|||||+..|..||.++|..
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 345799999999987543 1 13589999999999999988887653 34799999999999999999999
Q ss_pred hhCCCCCcEEEEc--CCccccc-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhc-CCccEEEEcCCcccCchHHHHHH
Q 010991 91 WSTIQDDQICRFT--SDSKERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVI 166 (496)
Q Consensus 91 ~~~~~~~~v~~~~--g~~~~~~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~~~~~~~l 166 (496)
+.. . .+.... ++....+ .....|+|+|++.+..... .....+.. ....+||+||||+.....|.+.+
T Consensus 316 ~~~-~--~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~------~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l 386 (667)
T TIGR00348 316 LQK-D--CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLK------EEEEKFPVDRKEVVVIFDEAHRSQYGELAKNL 386 (667)
T ss_pred hCC-C--CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHh------hhhhccCCCCCCEEEEEEcCccccchHHHHHH
Confidence 742 1 111111 1111111 2346799999999964211 11111111 12238999999999998888777
Q ss_pred -HhccCccEEEEeecCCCCccch-hhhh-hhhCccccccCHHHHHhCCCCCcceEEEEEcCC--CHHH----HHHHHhhh
Q 010991 167 -SLTKSHCKLGLTATLVREDERI-TDLN-FLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM--TKEF----FSEYLKKE 237 (496)
Q Consensus 167 -~~l~~~~~L~LTATp~r~d~~~-~~l~-~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~--~~~~----~~~yl~~~ 237 (496)
..++..++|||||||.+.++.. ...+ ..+|+.++.++..++++.|++.++.+..+.+.. +.+. ..++....
T Consensus 387 ~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL 466 (667)
T ss_pred HhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh
Confidence 4677889999999999864432 2222 346789999999999999999998776655432 2211 11221110
Q ss_pred ----cHHHHHHh---------hhhCCCcH-HHHHHHHHHhh---hcCCCeEEEEeccHHHHHHHHHHcC----------C
Q 010991 238 ----NSKKKQAL---------YVMNPNKF-RACEFLIRFHE---QQRGDKIIVFADNLFALTEYAMKLR----------K 290 (496)
Q Consensus 238 ----~~~~~~~l---------~~~~~~K~-~~l~~ll~~~~---~~~g~kiIVF~~~~~~~~~l~~~L~----------~ 290 (496)
.......+ ...++..+ .++..+++... ...+.|.+|||.++.+|..+.+.|. .
T Consensus 467 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~ 546 (667)
T TIGR00348 467 PERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA 546 (667)
T ss_pred hccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee
Confidence 00000000 11223222 23444544321 1235799999999999999988863 2
Q ss_pred CeEEcCCCHH---------------------HHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHH
Q 010991 291 PMIYGATSHV---------------------ERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEA 334 (496)
Q Consensus 291 ~~i~G~~~~~---------------------eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~ 334 (496)
..++|+.+.. ....++++|++...++++|+.. +..+..+ ..++
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~Ll 625 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLL 625 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHH
Confidence 2455554332 2347899998744788888777 2223233 3579
Q ss_pred HHccCcCcC-CCCccccccCCCCceeEEEEEEEc
Q 010991 335 QRLGRILRA-KGKLEDRMAGGKEEYNAFFYSLVS 367 (496)
Q Consensus 335 Qr~GR~~R~-g~~~~~~~~~~~~~~~~~vy~lvs 367 (496)
|++||+.|+ .++|. .+.|++++.
T Consensus 626 Qai~R~nR~~~~~K~----------~g~IvDy~g 649 (667)
T TIGR00348 626 QAIARTNRIDGKDKT----------FGLIVDYRG 649 (667)
T ss_pred HHHHHhccccCCCCC----------CEEEEECcC
Confidence 999999995 54333 567777765
No 52
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.7e-26 Score=211.86 Aligned_cols=300 Identities=18% Similarity=0.194 Sum_probs=213.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHH-HHHHHHh--cC---CcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV-GVSAACR--IK---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~-~i~~~~~--~~---~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
++-..|+.|+..++.+. ++|..+..|+|||.+ ++..+.. +. ..+||++||++|+.|..+.+....+....+
T Consensus 49 kPS~IQqrAi~~IlkGr---dViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGR---DVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred CchHHHhhhhhhhhccc---ceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 46678999999999875 999999999999977 3333322 22 369999999999999999998876555555
Q ss_pred EEEEcCCcc-----ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH----HHHhc
Q 010991 99 ICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISLT 169 (496)
Q Consensus 99 v~~~~g~~~-----~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~l~~l 169 (496)
+....|+.. .++.-+.+++..||+.+..+.+| ..|..+...++|+|||+.+.+..|.. +...+
T Consensus 126 ~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred EEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhC
Confidence 555555533 22445678999999998877554 24445788999999999999876543 45556
Q ss_pred c-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCc-ceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhh
Q 010991 170 K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIAN-VQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (496)
Q Consensus 170 ~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~-~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~ 247 (496)
+ ...++.+|||.+.+-- +.. ..|..+ +....-...++.+-...|. +.+
T Consensus 198 p~~~Qvv~~SATlp~eil-------------------emt-~kfmtdpvrilvkrdeltlEgIKqf~----------v~v 247 (400)
T KOG0328|consen 198 PPGAQVVLVSATLPHEIL-------------------EMT-EKFMTDPVRILVKRDELTLEGIKQFF----------VAV 247 (400)
T ss_pred CCCceEEEEeccCcHHHH-------------------HHH-HHhcCCceeEEEecCCCchhhhhhhe----------eee
Confidence 6 4588999999863211 111 222222 2222222334444333222 222
Q ss_pred hCCC-cHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 248 MNPN-KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 248 ~~~~-K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
...+ |++.+..|-+.+. -.+.+|||+++..++.|.+++. +..+||+|+++||+.+++.|+.+ +.++|+.|
T Consensus 248 e~EewKfdtLcdLYd~Lt---ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLitT 323 (400)
T KOG0328|consen 248 EKEEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLITT 323 (400)
T ss_pred chhhhhHhHHHHHhhhhe---hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEEEe
Confidence 2233 7788888877664 5689999999999999999985 56799999999999999999998 89999999
Q ss_pred e---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHH
Q 010991 322 K---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 384 (496)
Q Consensus 322 ~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~ 384 (496)
+ -.+.+.++..|+||+||.||-|+ ..++.++|..+ +....+.-++++.
T Consensus 324 DVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGR-------------kGvainFVk~~--d~~~lrdieq~ys 386 (400)
T KOG0328|consen 324 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR-------------KGVAINFVKSD--DLRILRDIEQYYS 386 (400)
T ss_pred chhhccCCcceeEEEEecCCCccHHHHhhhhccccccCC-------------cceEEEEecHH--HHHHHHHHHHHHh
Confidence 8 24667899999999999999996 46788888653 3334344444443
No 53
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=215.62 Aligned_cols=283 Identities=18% Similarity=0.200 Sum_probs=204.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHH-HHHHHHhcCC-----cEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV-GVSAACRIKK-----SCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~-~i~~~~~~~~-----~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
.++.|.|..++++++.+. ++|-++-||+|||.. ++..+.++.+ =+||+.||++|+.|..++|.-....-..
T Consensus 28 ~~pTpiQ~~cIpkILeGr---dcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILEGR---DCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCCchHhhhhHHHhccc---ccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 368999999999999885 999999999999988 4555555543 4899999999999999999876655667
Q ss_pred cEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc---
Q 010991 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT--- 169 (496)
Q Consensus 98 ~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l--- 169 (496)
+++++.|+.... +...++|+|+|++.+.....-..+. ..+. ..+..++|+|||+++.+..|...++.+
T Consensus 105 K~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~---~~~~-~~rlkflVlDEADrvL~~~f~d~L~~i~e~ 180 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGV---CSWI-FQRLKFLVLDEADRVLAGCFPDILEGIEEC 180 (442)
T ss_pred eEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCcc---chhh-hhceeeEEecchhhhhccchhhHHhhhhcc
Confidence 888988885532 4577899999999998664432110 1111 256779999999999999888777654
Q ss_pred -cCc-cEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEE----cCCCHHHHHHHHhhhcHHHHH
Q 010991 170 -KSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW----CPMTKEFFSEYLKKENSKKKQ 243 (496)
Q Consensus 170 -~~~-~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~----~~~~~~~~~~yl~~~~~~~~~ 243 (496)
+.. ..++||||... . +..+++-.+- .+ .+.++. .+..+..++.|+
T Consensus 181 lP~~RQtLlfSATitd---~---i~ql~~~~i~---------k~-----~a~~~e~~~~vstvetL~q~yI--------- 231 (442)
T KOG0340|consen 181 LPKPRQTLLFSATITD---T---IKQLFGCPIT---------KS-----IAFELEVIDGVSTVETLYQGYI--------- 231 (442)
T ss_pred CCCccceEEEEeehhh---H---HHHhhcCCcc---------cc-----cceEEeccCCCCchhhhhhhee---------
Confidence 333 77999999742 1 2222221100 00 011111 122234455554
Q ss_pred HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEE
Q 010991 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (496)
Q Consensus 244 ~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vl 318 (496)
.+....|-..+-.++...+......++||+++...++.++-.|+ +..+|+.|++.+|...+.+|+++ .+++|
T Consensus 232 --~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~il 308 (442)
T KOG0340|consen 232 --LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARIL 308 (442)
T ss_pred --ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEE
Confidence 12222333445566655543356789999999999999999885 67799999999999999999998 99999
Q ss_pred EEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 319 FLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 319 v~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
|+|+ -.+-+..|..|+||+||..|+|+
T Consensus 309 iaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR 350 (442)
T KOG0340|consen 309 IATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGR 350 (442)
T ss_pred EEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccC
Confidence 9999 23455789999999999999997
No 54
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=229.32 Aligned_cols=291 Identities=16% Similarity=0.150 Sum_probs=203.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-hc-C-------CcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-K-------KSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~~-~-------~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
.+.|.|..+++-.+-+. +.+-++.||+|||...+.++. ++ . .+|||+|||++|.-|....+++.+.+.
T Consensus 203 ~PTpIQ~a~IPvallgk---DIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 203 KPTPIQVATIPVALLGK---DICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCCchhhhcccHHhhcc---hhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 68999999999777664 888899999999998655543 32 1 279999999999999887777766555
Q ss_pred CCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHH---
Q 010991 96 DDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS--- 167 (496)
Q Consensus 96 ~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~--- 167 (496)
...+|+..||..-+ +...++|+|+||+.|..+...+.. |.-.++.++|+|||++|....|+.-++
T Consensus 280 ~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s-------f~ldsiEVLvlDEADRMLeegFademnEii 352 (691)
T KOG0338|consen 280 DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS-------FNLDSIEVLVLDEADRMLEEGFADEMNEII 352 (691)
T ss_pred cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC-------ccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 66788888886532 456799999999999876554422 222567789999999999887765444
Q ss_pred -hccC-ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEE-cCCCHHHHHHHHhhhcHHHHHH
Q 010991 168 -LTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW-CPMTKEFFSEYLKKENSKKKQA 244 (496)
Q Consensus 168 -~l~~-~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~-~~~~~~~~~~yl~~~~~~~~~~ 244 (496)
.++. .+.+++|||.. +.+.+| +.-..-.|+.+..-. ....+...++|+.....+
T Consensus 353 ~lcpk~RQTmLFSATMt---eeVkdL----------------~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~r---- 409 (691)
T KOG0338|consen 353 RLCPKNRQTMLFSATMT---EEVKDL----------------ASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKR---- 409 (691)
T ss_pred HhccccccceeehhhhH---HHHHHH----------------HHhhcCCCeEEEeCCccccchhhhHHHheecccc----
Confidence 3333 46799999985 233233 222222222211100 011123344554110000
Q ss_pred hhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEE
Q 010991 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (496)
Q Consensus 245 l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv 319 (496)
.-.+-.++..|+...- .+++|||+.+...+..+--.|+ +.-+||.++|++|.+.++.|++. ++++||
T Consensus 410 ----e~dRea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvLi 481 (691)
T KOG0338|consen 410 ----EGDREAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVLI 481 (691)
T ss_pred ----ccccHHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEEE
Confidence 0113345666665543 5689999999999888877764 67799999999999999999998 999999
Q ss_pred Eee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCC
Q 010991 320 LSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 320 ~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
+|+ -+.-+.+...|+||+||+.|+|+ . ++..+||..+
T Consensus 482 aTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGR----------a---GrsVtlvgE~ 533 (691)
T KOG0338|consen 482 ATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGR----------A---GRSVTLVGES 533 (691)
T ss_pred EechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhccc----------C---cceEEEeccc
Confidence 999 13344577889999999999996 3 4556677655
No 55
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=242.35 Aligned_cols=285 Identities=16% Similarity=0.213 Sum_probs=195.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cC-------CcEEEEEeChHHHHHHHHHHHHh
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IK-------KSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~-------~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
-.+|+|.|..|++.+.++. +++|.+|||+|||++|+.++.. .. -.+|+|+|.++|.+.....+..|
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~---nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGE---NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred cCCCCHHHHHHHHHHhCCC---ceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 4589999999999988664 9999999999999998776532 21 15899999999999999999999
Q ss_pred hCCCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch------
Q 010991 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------ 160 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------ 160 (496)
...-+..|.+.+|+..+. ...+++|+||||++|.-... ..+..+.| .+..+||+||.|.+...
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~----~~~~r~~l--~~vr~VIVDEiHel~~sKRG~~L 170 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLN----SPKFRELL--RDVRYVIVDEIHALAESKRGVQL 170 (814)
T ss_pred HHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhc----CHHHHHHh--cCCcEEEeehhhhhhccccchhh
Confidence 876677788899986543 34779999999999976643 22445566 67889999999999853
Q ss_pred --HHHHHHHhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhc
Q 010991 161 --MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (496)
Q Consensus 161 --~~~~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~ 238 (496)
...++........+||||||.-..+.. -.++.|.- . ..+++.-..-.+..+.. .+|.....+. .
T Consensus 171 sl~LeRL~~l~~~~qRIGLSATV~~~~~v---arfL~g~~-~---~~~Iv~~~~~k~~~i~v-~~p~~~~~~~------~ 236 (814)
T COG1201 171 ALSLERLRELAGDFQRIGLSATVGPPEEV---AKFLVGFG-D---PCEIVDVSAAKKLEIKV-ISPVEDLIYD------E 236 (814)
T ss_pred hhhHHHHHhhCcccEEEeehhccCCHHHH---HHHhcCCC-C---ceEEEEcccCCcceEEE-EecCCccccc------c
Confidence 334444434456899999998632222 11222221 0 11111122222222222 2221110000 0
Q ss_pred HHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------CCeEEcCCCHHHHHHHHHHHhcC
Q 010991 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCS 312 (496)
Q Consensus 239 ~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~il~~F~~~ 312 (496)
... ..-...+.++++.| ..+|||+|++..++.++..|. +...||+++.+.|..+.++|++|
T Consensus 237 ~~~--------~~~~~~i~~~v~~~-----~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G 303 (814)
T COG1201 237 ELW--------AALYERIAELVKKH-----RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG 303 (814)
T ss_pred chh--------HHHHHHHHHHHhhc-----CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC
Confidence 000 00113344555433 489999999999999999884 56689999999999999999999
Q ss_pred CCccEEEEee---------------ccCCCCChhHHHHHccCcCcCC
Q 010991 313 RDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 313 ~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g 344 (496)
+++++|+|+ .+..+.+....+||+||+|+.-
T Consensus 304 -~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~ 349 (814)
T COG1201 304 -ELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRL 349 (814)
T ss_pred -CceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhcccccccc
Confidence 899999999 2333344455799999987654
No 56
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4.1e-26 Score=225.49 Aligned_cols=278 Identities=19% Similarity=0.216 Sum_probs=199.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---------CC--cEEEEEeChHHHHHHHHHHHHhhC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KK--SCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---------~~--~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
...|.|..+++.++++. ++++-++||+|||++.+.++... .. -.|||+||++|+.|+.+....|..
T Consensus 28 ~mTpVQa~tIPlll~~K---DVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~ 104 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNK---DVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLE 104 (567)
T ss_pred ccCHHHHhhhHHHhcCC---ceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHH
Confidence 67999999999888776 89999999999999987776542 11 479999999999999988877753
Q ss_pred -CCCCcEEEEcCCcccc-----c-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH--
Q 010991 94 -IQDDQICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-- 164 (496)
Q Consensus 94 -~~~~~v~~~~g~~~~~-----~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~-- 164 (496)
++..+...+.|+..-. + ...++|+|+||+.|.....|. ...+..+...++|+|||+++.+..|.+
T Consensus 105 ~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~------~~~l~~rsLe~LVLDEADrLldmgFe~~~ 178 (567)
T KOG0345|consen 105 HLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQRE------AEKLSFRSLEILVLDEADRLLDMGFEASV 178 (567)
T ss_pred hhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhch------hhhccccccceEEecchHhHhcccHHHHH
Confidence 4666666777774311 1 356889999999997664442 334545788999999999999987754
Q ss_pred --HHHhccCccEEEE-eecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcC---CCHHHHHHHHhhhc
Q 010991 165 --VISLTKSHCKLGL-TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP---MTKEFFSEYLKKEN 238 (496)
Q Consensus 165 --~l~~l~~~~~L~L-TATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~---~~~~~~~~yl~~~~ 238 (496)
++..++..++-|| |||-..+.+ ++...|.-.++.+..-.-. .+......|+
T Consensus 179 n~ILs~LPKQRRTGLFSATq~~~v~-------------------dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~---- 235 (567)
T KOG0345|consen 179 NTILSFLPKQRRTGLFSATQTQEVE-------------------DLARAGLRNPVRVSVKEKSKSATPSSLALEYL---- 235 (567)
T ss_pred HHHHHhcccccccccccchhhHHHH-------------------HHHHhhccCceeeeecccccccCchhhcceee----
Confidence 5555666677665 999753322 2332333323322211111 1122222332
Q ss_pred HHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHHhc
Q 010991 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKC 311 (496)
Q Consensus 239 ~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~ 311 (496)
.+....|+..|-.++... ...|+|||..+...++.+...|. +..+||.+++..|..++..|.+
T Consensus 236 -------v~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 236 -------VCEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred -------EecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 122224666666666543 36899999999999999988773 4569999999999999999998
Q ss_pred CCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 312 SRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 312 ~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
. .-.++++|+ .++++.++..+.||.||++|.|+
T Consensus 306 ~-~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr 353 (567)
T KOG0345|consen 306 L-SNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGR 353 (567)
T ss_pred c-cCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccC
Confidence 5 567888887 46778899999999999999996
No 57
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=222.74 Aligned_cols=298 Identities=17% Similarity=0.162 Sum_probs=201.0
Q ss_pred CCCC-CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH----HHhc-----------CCcEEEEEeChHHHHHH
Q 010991 21 KPHA-QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA----ACRI-----------KKSCLCLATNAVSVDQW 84 (496)
Q Consensus 21 ~~~~-~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~----~~~~-----------~~~~LIl~P~~~L~~Qw 84 (496)
++++ .+-|.|+.+++-.+.++ +.|.+++||+|||...+.. +..+ +...+|++||++|+.|.
T Consensus 262 ~~~y~eptpIqR~aipl~lQ~r---D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqI 338 (673)
T KOG0333|consen 262 KPGYKEPTPIQRQAIPLGLQNR---DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQI 338 (673)
T ss_pred hcCCCCCchHHHhhccchhccC---CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHH
Confidence 3444 57999999999777775 9999999999999764322 2222 33689999999999999
Q ss_pred HHHHHHhhCCCCCcEEEEcCCcc-c----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc
Q 010991 85 AFQFKLWSTIQDDQICRFTSDSK-E----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (496)
Q Consensus 85 ~~e~~~~~~~~~~~v~~~~g~~~-~----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (496)
.+|-.+|+...+.++..+-|+.. + .+..++.|+|+||+.|..... ...-. .....+||+|||++|.+
T Consensus 339 eeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Le------nr~lv--l~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 339 EEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLE------NRYLV--LNQCTYVVLDEADRMID 410 (673)
T ss_pred HHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHH------HHHHH--hccCceEeccchhhhhc
Confidence 99999987555556555555533 2 245679999999999876532 22222 26788999999999987
Q ss_pred h----HHHHHHHhccCc--------------------------cEEEEeecCCCCccchhhhhhhhCccccccCHHHHHh
Q 010991 160 H----MFRKVISLTKSH--------------------------CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVK 209 (496)
Q Consensus 160 ~----~~~~~l~~l~~~--------------------------~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~ 209 (496)
. .+.+++..++.. ..+.||||.....+. +.
T Consensus 411 mgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ver--------------------la 470 (673)
T KOG0333|consen 411 MGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVER--------------------LA 470 (673)
T ss_pred ccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHH--------------------HH
Confidence 5 445666655431 134555554321111 11
Q ss_pred CCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHH-HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc
Q 010991 210 GGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ-ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288 (496)
Q Consensus 210 ~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~-~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L 288 (496)
.+|+.++.+..+-..- ....+..+ ...+.+..|+..|..+++.. ....+|||++++..++.+|+.|
T Consensus 471 r~ylr~pv~vtig~~g----------k~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~L 537 (673)
T KOG0333|consen 471 RSYLRRPVVVTIGSAG----------KPTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKIL 537 (673)
T ss_pred HHHhhCCeEEEeccCC----------CCccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHH
Confidence 2222222222211110 00111111 22233445666667777543 2568999999999999999999
Q ss_pred C-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCcc
Q 010991 289 R-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLE 348 (496)
Q Consensus 289 ~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~ 348 (496)
. +..+||+-++++|+.+++.|+++ ..++||+|+ -++-..|...|.||+||+||+|+
T Consensus 538 eK~g~~~~tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk--- 613 (673)
T KOG0333|consen 538 EKAGYKVTTLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGK--- 613 (673)
T ss_pred hhccceEEEeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccccc---
Confidence 5 56799999999999999999998 899999999 12233578899999999999995
Q ss_pred ccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 349 DRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 349 ~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
...+.+|++..-.+.+|.
T Consensus 614 ----------~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 614 ----------SGTAISFLTPADTAVFYD 631 (673)
T ss_pred ----------CceeEEEeccchhHHHHH
Confidence 355666676655555554
No 58
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=1.3e-25 Score=254.99 Aligned_cols=336 Identities=18% Similarity=0.244 Sum_probs=234.9
Q ss_pred CCCCcHHHHHHHHHHHh--cCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 23 HAQPRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
...|||||.++++|+.. .....+|+++++||+|||+++++++... .+++||+||++ ++.+|.++|.+|.
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k~~- 413 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEKFA- 413 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhhhC-
Confidence 36799999999987551 2223589999999999999999988641 24899999988 5789999999984
Q ss_pred CCCCc-EEEEcCCccc------ccc---C-----CCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 94 IQDDQ-ICRFTSDSKE------RFR---G-----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 94 ~~~~~-v~~~~g~~~~------~~~---~-----~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+... +..+.|.... .+. . ..+|+++||+.+.... .....+...+|+.+|+||+|+++
T Consensus 414 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-------~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 414 -PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-------VDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred -ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-------hhHHHHhhceeeeeehhhHHHHh
Confidence 4555 7777776631 111 1 1789999999997521 12456667899999999999999
Q ss_pred ch---HHHHHHHhccCccEEEEeecCCCCccc-hhhhhh-hhCccccccC------------------------------
Q 010991 159 AH---MFRKVISLTKSHCKLGLTATLVREDER-ITDLNF-LIGPKLYEAN------------------------------ 203 (496)
Q Consensus 159 ~~---~~~~~l~~l~~~~~L~LTATp~r~d~~-~~~l~~-l~gp~~~~~~------------------------------ 203 (496)
+. .+. .+..+++.+++.|||||+.+.-. ...+.. ++.|..+...
T Consensus 486 n~~s~~~~-~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (866)
T COG0553 486 NDQSSEGK-ALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIEL 564 (866)
T ss_pred hhhhHHHH-HHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHH
Confidence 76 344 34478888999999999633211 112233 3333332211
Q ss_pred HHHHHh-------------CCCCCcceEEEEEcCCCHHHHH---HHHh---hhcH-------H----------HHHHh--
Q 010991 204 WLDLVK-------------GGFIANVQCAEVWCPMTKEFFS---EYLK---KENS-------K----------KKQAL-- 245 (496)
Q Consensus 204 ~~~l~~-------------~g~l~~~~~~~v~~~~~~~~~~---~yl~---~~~~-------~----------~~~~l-- 245 (496)
...++. ...+++.....+.|.+++.+.. .++. .... . ....+
T Consensus 565 l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 644 (866)
T COG0553 565 LRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILAL 644 (866)
T ss_pred HHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH
Confidence 001000 0122333344455666664332 2221 0000 0 00011
Q ss_pred ------hh------hCC------------------------------CcHHHHHHHH-HHhhhcCCC--eEEEEeccHHH
Q 010991 246 ------YV------MNP------------------------------NKFRACEFLI-RFHEQQRGD--KIIVFADNLFA 280 (496)
Q Consensus 246 ------~~------~~~------------------------------~K~~~l~~ll-~~~~~~~g~--kiIVF~~~~~~ 280 (496)
.+ ... +|...+..++ .... ..|+ +++||++++..
T Consensus 645 ~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~-~~~~~~kvlifsq~t~~ 723 (866)
T COG0553 645 LTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLL-EEGHYHKVLIFSQFTPV 723 (866)
T ss_pred HHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHH-hhcccccEEEEeCcHHH
Confidence 01 111 6778888888 4444 5677 99999999999
Q ss_pred HHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----------------ccCCCCChhHHHHHccC
Q 010991 281 LTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGR 339 (496)
Q Consensus 281 ~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------------i~~~~~s~~~~~Qr~GR 339 (496)
++.+...|. +..++|+++.++|..++++|++++...++++|. +++++|||..+.|+++|
T Consensus 724 l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dR 803 (866)
T COG0553 724 LDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDR 803 (866)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHH
Confidence 999998884 456899999999999999999976789999887 67888999999999999
Q ss_pred cCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHH
Q 010991 340 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 381 (496)
Q Consensus 340 ~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~ 381 (496)
++|+| |.+.|.+|.+++++|+|+++......
T Consensus 804 a~Rig-----------Q~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 804 AHRIG-----------QKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred HHHhc-----------CcceeEEEEeecCCcHHHHHHHHHHH
Confidence 99999 66789999999999999988754433
No 59
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.94 E-value=4.6e-26 Score=226.57 Aligned_cols=280 Identities=15% Similarity=0.130 Sum_probs=196.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----------CCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----------~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
++.+.|..+++.++.+. +++.++-||+|||+..+..+.+. +-.+||||||++|+.|...+.+.....
T Consensus 104 ~MT~VQ~~ti~pll~gk---Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~ 180 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLEGK---DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKY 180 (543)
T ss_pred chhHHHHhhcCccCCCc---cceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhh
Confidence 68999999999888875 89999999999999976655432 115999999999999999999887644
Q ss_pred C-CCcEEEEcCCcc-----ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHh
Q 010991 95 Q-DDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (496)
Q Consensus 95 ~-~~~v~~~~g~~~-----~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~ 168 (496)
. ...+.++-|+.. +++..+++|+|+||+.|..+..+... ++ .+...++|+|||+++.+..|++-+..
T Consensus 181 h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~------f~-~r~~k~lvlDEADrlLd~GF~~di~~ 253 (543)
T KOG0342|consen 181 HESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG------FL-FRNLKCLVLDEADRLLDIGFEEDVEQ 253 (543)
T ss_pred CCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc------ch-hhccceeEeecchhhhhcccHHHHHH
Confidence 3 556666666644 22445899999999999766544322 11 24557999999999999887765554
Q ss_pred c----cC-ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCC--CHHHHHHHHhhhcHHH
Q 010991 169 T----KS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM--TKEFFSEYLKKENSKK 241 (496)
Q Consensus 169 l----~~-~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~--~~~~~~~yl~~~~~~~ 241 (496)
+ +. .+.+++|||...... ++. .+.+.+ .+..+.|.- .++.. ....
T Consensus 254 Ii~~lpk~rqt~LFSAT~~~kV~---~l~-----------------~~~L~~-d~~~v~~~d~~~~~Th-------e~l~ 305 (543)
T KOG0342|consen 254 IIKILPKQRQTLLFSATQPSKVK---DLA-----------------RGALKR-DPVFVNVDDGGERETH-------ERLE 305 (543)
T ss_pred HHHhccccceeeEeeCCCcHHHH---HHH-----------------HHhhcC-CceEeecCCCCCcchh-------hccc
Confidence 4 32 367999999863222 221 111111 111222211 10000 0000
Q ss_pred HHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCcc
Q 010991 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (496)
Q Consensus 242 ~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~ 316 (496)
+..+.+....+|..+-.+++.+. ...|+||||.+....+.+++.|+ +.-|||+.+|..|..+..+|.+. +--
T Consensus 306 Qgyvv~~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-esg 382 (543)
T KOG0342|consen 306 QGYVVAPSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ESG 382 (543)
T ss_pred ceEEeccccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-ccc
Confidence 11112222334556666676654 23899999999999999998885 55699999999999999999997 778
Q ss_pred EEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 317 TIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 317 vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+||+|+ .++.+.+|.+|+||+||++|.|.
T Consensus 383 IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk 426 (543)
T KOG0342|consen 383 ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGK 426 (543)
T ss_pred eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCC
Confidence 888888 45778899999999999999774
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.94 E-value=4.3e-25 Score=241.06 Aligned_cols=283 Identities=19% Similarity=0.167 Sum_probs=192.8
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
+++|.|+.++..++-.+ +|.+|++|||+|||++|..++... +.++++|||+++|+++..++|.+|.. -+.+|.
T Consensus 31 el~~~qq~av~~~~~~~--~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~-~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGLLSD--ENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEE-LGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccccCC--CcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHh-cCCEEE
Confidence 89999999999877664 599999999999999998877542 46999999999999999999995543 346899
Q ss_pred EEcCCccccc--cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhccC---
Q 010991 101 RFTSDSKERF--RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKS--- 171 (496)
Q Consensus 101 ~~~g~~~~~~--~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~~--- 171 (496)
..+|+..... -..++|+|+||+.+-....+... ++ .++++||+||+|.+.+. ....++.....
T Consensus 108 ~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~------~~--~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 108 ISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS------WI--EEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EecCCcccchhhhccCCEEEEchHHhhHhhhcCcc------hh--hcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 9999976432 35689999999999776544322 33 68899999999999865 34444443332
Q ss_pred -ccEEEEeecCCCCccchhhhhhhhCccccccCHH--HHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhh
Q 010991 172 -HCKLGLTATLVREDERITDLNFLIGPKLYEANWL--DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (496)
Q Consensus 172 -~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~--~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~ 248 (496)
.+.+|||||..+..+. ..+++...+...|. .+. .+..-...+. ... .. .+ ...
T Consensus 180 ~~rivgLSATlpN~~ev----A~wL~a~~~~~~~rp~~l~-~~v~~~~~~~--~~~--~~------------~k---~~~ 235 (766)
T COG1204 180 LIRIVGLSATLPNAEEV----ADWLNAKLVESDWRPVPLR-RGVPYVGAFL--GAD--GK------------KK---TWP 235 (766)
T ss_pred ceEEEEEeeecCCHHHH----HHHhCCcccccCCCCcccc-cCCccceEEE--Eec--Cc------------cc---ccc
Confidence 4789999999754443 33333332222221 111 1111111000 000 00 00 000
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC---------------------------------------
Q 010991 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------------------------------- 289 (496)
Q Consensus 249 ~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~--------------------------------------- 289 (496)
.......++.+++.+ ..|.++||||+++..+...++.|.
T Consensus 236 ~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v 313 (766)
T COG1204 236 LLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELV 313 (766)
T ss_pred ccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHH
Confidence 001112333444444 578899999999876555555441
Q ss_pred ---CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------c------cC-----CCCChhHHHHHccCcCc
Q 010991 290 ---KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------I------SS-----HAGSRRQEAQRLGRILR 342 (496)
Q Consensus 290 ---~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i------~~-----~~~s~~~~~Qr~GR~~R 342 (496)
+++.|.+++.++|..+-+.|+.| .++||++|. + .+ -.-++.++.|+.||+||
T Consensus 314 ~~GvafHhAGL~~~~R~~vE~~Fr~g-~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 314 LRGVAFHHAGLPREDRQLVEDAFRKG-KIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred HhCccccccCCCHHHHHHHHHHHhcC-CceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 56789999999999999999999 999999998 1 11 11266788999999999
Q ss_pred CCC
Q 010991 343 AKG 345 (496)
Q Consensus 343 ~g~ 345 (496)
+|-
T Consensus 393 Pg~ 395 (766)
T COG1204 393 PGY 395 (766)
T ss_pred CCc
Confidence 995
No 61
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.94 E-value=9e-26 Score=226.54 Aligned_cols=278 Identities=15% Similarity=0.114 Sum_probs=202.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c---------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I---------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~---------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
+.+...|..+|+..+.+. +++-++-||+|||++.+.++.. + +--+|||+||++|+.|..+.+.+...
T Consensus 90 v~~teiQ~~~Ip~aL~G~---DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGH---DVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred ccHHHHHHhhcchhccCc---ccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 467899999999888775 8899999999999996555432 2 23699999999999999999999876
Q ss_pred CCCCcEEEEcCCccccc----cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHh-
Q 010991 94 IQDDQICRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL- 168 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~~~----~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~- 168 (496)
......+++.||..-.+ -...+|+||||+.|..+.... ..|......++|+|||+++.+..|.+.++.
T Consensus 167 ~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~-------~~f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDEN-------PNFSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred ccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhc-------CCCCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 66777888888765322 146889999999997553211 123345678999999999999988766554
Q ss_pred ---ccC-ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEc---CCCHHHHHHHHhhhcHHH
Q 010991 169 ---TKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC---PMTKEFFSEYLKKENSKK 241 (496)
Q Consensus 169 ---l~~-~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~---~~~~~~~~~yl~~~~~~~ 241 (496)
++. ...|++|||+.+... +|..+ -+.++.+..+.. .-+|+..+.
T Consensus 240 i~~lP~~RQTLLFSATqt~svk---dLaRL-----------------sL~dP~~vsvhe~a~~atP~~L~Q--------- 290 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKSVK---DLARL-----------------SLKDPVYVSVHENAVAATPSNLQQ--------- 290 (758)
T ss_pred HHhCChhheeeeeecccchhHH---HHHHh-----------------hcCCCcEEEEeccccccChhhhhh---------
Confidence 444 378999999974322 22111 112222322221 112222111
Q ss_pred HHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHHhcCCC
Q 010991 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRD 314 (496)
Q Consensus 242 ~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~~~ 314 (496)
..+.+....|+.++-..|..|. ..|+|||..+...+..++..+. +..+||.|++..|.++..+|... .
T Consensus 291 -~y~~v~l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~-~ 365 (758)
T KOG0343|consen 291 -SYVIVPLEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK-R 365 (758)
T ss_pred -eEEEEehhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh-c
Confidence 1122334457788888887765 7899999999999999888773 45689999999999999999986 7
Q ss_pred ccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 315 LNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 315 ~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
--|+|+|+ .++-+.+..+|+||+||+.|.+.
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~ 411 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKE 411 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccC
Confidence 78889988 24555688899999999999984
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=6.4e-25 Score=238.25 Aligned_cols=285 Identities=16% Similarity=0.143 Sum_probs=174.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCC-
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ- 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~- 95 (496)
.++++|||.++++.++.+. ...++.+|||+|||.+..+++..+ ..+++++||+++|+.|..+++.+|....
T Consensus 13 G~~PtpiQ~~~i~~il~G~--~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQ--PPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred CCCCCHHHHHHHHHHHcCC--CcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 4559999999999888654 256778999999998644333222 1234446799999999999999986421
Q ss_pred ----------------------CCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccC-CChhHHHHH-----HHHh
Q 010991 96 ----------------------DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGK-RSEESEKII-----EEIR 142 (496)
Q Consensus 96 ----------------------~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~-r~~~~~~~~-----~~l~ 142 (496)
...+..+.|+... .+...++|+|+|.+++.+..- |.+.....+ ..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L- 169 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL- 169 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh-
Confidence 2456666777442 134567899999988854321 111100000 112
Q ss_pred cCCccEEEEcCCcccCchHHHH----HHHhc--cC----ccEEEEeecCCCCccchhhhhhhh--CccccccCHHHHHhC
Q 010991 143 NREWGLLLMDEVHVVPAHMFRK----VISLT--KS----HCKLGLTATLVREDERITDLNFLI--GPKLYEANWLDLVKG 210 (496)
Q Consensus 143 ~~~~~~vIlDEaH~~~~~~~~~----~l~~l--~~----~~~L~LTATp~r~d~~~~~l~~l~--gp~~~~~~~~~l~~~ 210 (496)
.+..++|+|||| ....|.. ++..+ .. .+.++||||+..... .+...+ .|.........
T Consensus 170 -~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~---~l~~~~~~~p~~i~V~~~~---- 239 (844)
T TIGR02621 170 -GQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGP---DRTTLLSAEDYKHPVLKKR---- 239 (844)
T ss_pred -ccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHH---HHHHHHccCCceeeccccc----
Confidence 567899999999 3344443 33332 11 368999999964221 221111 22221111111
Q ss_pred CCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-
Q 010991 211 GFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR- 289 (496)
Q Consensus 211 g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~- 289 (496)
+........ ++...+.... ..+..+..... ..+.++||||+++..++.+++.|.
T Consensus 240 --l~a~ki~q~-v~v~~e~Kl~---------------------~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~ 294 (844)
T TIGR02621 240 --LAAKKIVKL-VPPSDEKFLS---------------------TMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPK 294 (844)
T ss_pred --ccccceEEE-EecChHHHHH---------------------HHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHh
Confidence 111111111 1111111000 11122222222 346799999999999999999995
Q ss_pred --CCeEEcCCCHHHHH-----HHHHHHhc----CC------CccEEEEee------------ccCCCCChhHHHHHccCc
Q 010991 290 --KPMIYGATSHVERT-----KILQAFKC----SR------DLNTIFLSK------------ISSHAGSRRQEAQRLGRI 340 (496)
Q Consensus 290 --~~~i~G~~~~~eR~-----~il~~F~~----~~------~~~vlv~s~------------i~~~~~s~~~~~Qr~GR~ 340 (496)
...+||++++.+|. .++++|++ +. ...+||+|. ++....+...|+||+||+
T Consensus 295 ~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~aP~esyIQRiGRt 374 (844)
T TIGR02621 295 EKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLAPFESMQQRFGRV 374 (844)
T ss_pred cCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcceEEECCCCHHHHHHHhccc
Confidence 57899999999999 88999987 31 256777777 222334678899999999
Q ss_pred CcCCC
Q 010991 341 LRAKG 345 (496)
Q Consensus 341 ~R~g~ 345 (496)
+|.|.
T Consensus 375 gR~G~ 379 (844)
T TIGR02621 375 NRFGE 379 (844)
T ss_pred CCCCC
Confidence 99995
No 63
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.93 E-value=1.5e-25 Score=236.05 Aligned_cols=319 Identities=18% Similarity=0.198 Sum_probs=218.5
Q ss_pred CCCccccCCCCCCcHHHHHHHHHHH---hcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHH
Q 010991 14 PDLNMELKPHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWA 85 (496)
Q Consensus 14 ~~~~~~l~~~~~lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~ 85 (496)
+...++.-....+|+||..|++++. ..++ +.++|+|+||+|||.+|++++..+ .+++|+|+...+|++|-+
T Consensus 154 ~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~-~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~ 232 (875)
T COG4096 154 QLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQ-NRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAY 232 (875)
T ss_pred ccccCcccccccchHHHHHHHHHHHHHHhcCC-ceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHH
Confidence 3344555557789999999999864 4554 359999999999999999999765 469999999999999999
Q ss_pred HHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHH
Q 010991 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (496)
Q Consensus 86 ~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~ 165 (496)
..|..+. |......+..+... ...+.|.|+||+.+....... ...+..+....|++||+||||+-....++.+
T Consensus 233 ~af~~~~--P~~~~~n~i~~~~~--~~s~~i~lsTyqt~~~~~~~~---~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I 305 (875)
T COG4096 233 GAFEDFL--PFGTKMNKIEDKKG--DTSSEIYLSTYQTMTGRIEQK---EDEYRRFGPGFFDLIVIDEAHRGIYSEWSSI 305 (875)
T ss_pred HHHHHhC--CCccceeeeecccC--CcceeEEEeehHHHHhhhhcc---ccccccCCCCceeEEEechhhhhHHhhhHHH
Confidence 9999974 44344333333221 235789999999997553322 1223445456799999999999999999989
Q ss_pred HHhccCccEEEEeecCCCCccchhhhhhhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHH--HHHhhhcHHHH
Q 010991 166 ISLTKSHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS--EYLKKENSKKK 242 (496)
Q Consensus 166 l~~l~~~~~L~LTATp~r~d~~~~~l~~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~--~yl~~~~~~~~ 242 (496)
+..+.+.. +||||||-...+. +-..+| |-.+|.++..+.+..|+++++....+.....-+-+. .--++.+....
T Consensus 306 ~dYFdA~~-~gLTATP~~~~d~--~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 306 LDYFDAAT-QGLTATPKETIDR--STYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHH-HhhccCccccccc--ccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 98886654 6669999754333 334456 989999999999999999998877666443211000 00000000000
Q ss_pred H--------------HhhhhCCCcHHHHHHHHHHhhhc-C---CCeEEEEeccHHHHHHHHHHcC----------CCeEE
Q 010991 243 Q--------------ALYVMNPNKFRACEFLIRFHEQQ-R---GDKIIVFADNLFALTEYAMKLR----------KPMIY 294 (496)
Q Consensus 243 ~--------------~l~~~~~~K~~~l~~ll~~~~~~-~---g~kiIVF~~~~~~~~~l~~~L~----------~~~i~ 294 (496)
. .-.+....+-.++..+.+++... . -.|+||||.+..|++.+...|. +..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0 00011112223445555555420 2 3699999999999999999995 34467
Q ss_pred cCCCHHHHHHHHHHHhcCCCccEEEEee----------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 295 GATSHVERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 295 G~~~~~eR~~il~~F~~~~~~~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
|+..+ -...++.|..+.....|++|. +.....|..-|.|++||+-|.-+
T Consensus 463 ~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 463 GDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred ccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCc
Confidence 76653 356677886654666666665 34566799999999999999875
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=4.3e-24 Score=218.42 Aligned_cols=281 Identities=17% Similarity=0.171 Sum_probs=172.4
Q ss_pred eEEEeCCCCChHHHHHHHHHh-----cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcc-----------c-
Q 010991 46 GIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK-----------E- 108 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~-----~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~-----------~- 108 (496)
.+|.+|||+|||.+++.++.. ...++++++|+++|+.|+.+.+..+++- .++.+++... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEF 78 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhH
Confidence 589999999999998887763 2468999999999999999999997642 3333333211 0
Q ss_pred -c----------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH---HHHHHhcc--Cc
Q 010991 109 -R----------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---RKVISLTK--SH 172 (496)
Q Consensus 109 -~----------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~---~~~l~~l~--~~ 172 (496)
. .....+|+|+|++.+.....+... .... .+.....++||+||+|.+....+ ..++..+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-~~~~-~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~ 156 (358)
T TIGR01587 79 EHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFG-HYEF-TLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDV 156 (358)
T ss_pred HHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccc-hHHH-HHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 0 002367999999998755433100 0011 11113447999999999986533 33333333 34
Q ss_pred cEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCc
Q 010991 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (496)
Q Consensus 173 ~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K 252 (496)
+.+++|||+.. ....+..-++.... .......... ... ...+. ........+
T Consensus 157 ~~i~~SATlp~---~l~~~~~~~~~~~~---------~~~~~~~~~~----~~~---~~~~~---------~~~~~~~~~ 208 (358)
T TIGR01587 157 PILLMSATLPK---FLKEYAEKIGYVEF---------NEPLDLKEER----RFE---RHRFI---------KIESDKVGE 208 (358)
T ss_pred CEEEEecCchH---HHHHHHhcCCCccc---------ccCCCCcccc----ccc---cccce---------eeccccccC
Confidence 68999999861 11111100100000 0000000000 000 00000 000011234
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHH----HHHHHhcCCCccEEEEe
Q 010991 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTK----ILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 253 ~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~----il~~F~~~~~~~vlv~s 321 (496)
...+..++... ..+.++||||+++.+++.++..|. +..+||++++.+|.+ +++.|+++ ...+||+|
T Consensus 209 ~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilvaT 285 (358)
T TIGR01587 209 ISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVAT 285 (358)
T ss_pred HHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEEC
Confidence 45566666544 357899999999999999999983 457999999999976 48999998 88999999
Q ss_pred e------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCC
Q 010991 322 K------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 322 ~------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
+ ++....++..|+||+||+||.|++.. ...++++|.....+
T Consensus 286 ~~~~~GiDi~~~~vi~~~~~~~~~iqr~GR~gR~g~~~~-------~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 286 QVIEASLDISADVMITELAPIDSLIQRLGRLHRYGRKNG-------ENFEVYIITIAPEG 338 (358)
T ss_pred cchhceeccCCCEEEEcCCCHHHHHHHhccccCCCCCCC-------CCCeEEEEeecCCC
Confidence 8 22234578899999999999996432 23356666655443
No 65
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.93 E-value=2.4e-24 Score=217.32 Aligned_cols=289 Identities=20% Similarity=0.197 Sum_probs=197.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH----HHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA----ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~----~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
...|.|.|..|+..-+-.| .+-+++.+|++|||+++-.+ +..-+++.|++||..+|++|-+++|+.-..--+..
T Consensus 214 ~~eLlPVQ~laVe~GLLeG--~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lglk 291 (830)
T COG1202 214 IEELLPVQVLAVEAGLLEG--ENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLK 291 (830)
T ss_pred cceecchhhhhhhhccccC--CceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccce
Confidence 4579999999999866555 48999999999999996333 34457899999999999999999998743222334
Q ss_pred EEEEcCCcc---------ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--------H
Q 010991 99 ICRFTSDSK---------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------M 161 (496)
Q Consensus 99 v~~~~g~~~---------~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--------~ 161 (496)
+.+-.|-.. ......++|+|.||+-+-....-. ..+ .++|.|||||+|.+... .
T Consensus 292 vairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-------~~l--gdiGtVVIDEiHtL~deERG~RLdGL 362 (830)
T COG1202 292 VAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-------KDL--GDIGTVVIDEIHTLEDEERGPRLDGL 362 (830)
T ss_pred EEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-------Ccc--cccceEEeeeeeeccchhcccchhhH
Confidence 433222211 112356899999998765442211 112 68899999999999863 2
Q ss_pred HHHHHHhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHH
Q 010991 162 FRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (496)
Q Consensus 162 ~~~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~ 241 (496)
..++-..++..+.|+||||.-++.+. ...+|..+.. +.+..+| ..
T Consensus 363 I~RLr~l~~~AQ~i~LSATVgNp~el----A~~l~a~lV~----------------y~~RPVp---------------lE 407 (830)
T COG1202 363 IGRLRYLFPGAQFIYLSATVGNPEEL----AKKLGAKLVL----------------YDERPVP---------------LE 407 (830)
T ss_pred HHHHHHhCCCCeEEEEEeecCChHHH----HHHhCCeeEe----------------ecCCCCC---------------hh
Confidence 23333334557899999998644333 2333332211 1111111 22
Q ss_pred HHHhhhhCC-CcHHHHHHHHHHh---h--hcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHh
Q 010991 242 KQALYVMNP-NKFRACEFLIRFH---E--QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFK 310 (496)
Q Consensus 242 ~~~l~~~~~-~K~~~l~~ll~~~---~--~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~ 310 (496)
+.++++.|. .|+.++..|.+.- + ..-..++|||++++..+..+++.|. +..+|++++..+|..+...|.
T Consensus 408 rHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~ 487 (830)
T COG1202 408 RHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA 487 (830)
T ss_pred HeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh
Confidence 333344432 3556666665321 1 0223589999999999999999995 677999999999999999999
Q ss_pred cCCCccEEEEee-------------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCC
Q 010991 311 CSRDLNTIFLSK-------------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 311 ~~~~~~vlv~s~-------------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
++ ++.++|.|. +--.|-|++.|.|++||+||++- + ....||-+|-.+
T Consensus 488 ~q-~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~y-H----------drGkVyllvepg 553 (830)
T COG1202 488 AQ-ELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDY-H----------DRGKVYLLVEPG 553 (830)
T ss_pred cC-CcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCc-c----------cCceEEEEecCC
Confidence 98 999999887 12234599999999999999984 2 246688787543
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.92 E-value=1.5e-23 Score=213.53 Aligned_cols=280 Identities=16% Similarity=0.168 Sum_probs=171.4
Q ss_pred HHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCC----CCCcEEEEcC
Q 010991 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI----QDDQICRFTS 104 (496)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~----~~~~v~~~~g 104 (496)
||.++++.+..++ ..+.+|++|||+|||.+++.++.....++++++|+++|++||.+.+..++.. ....+..++|
T Consensus 1 hQ~~~~~~~~~~~-~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g 79 (357)
T TIGR03158 1 HQVATFEALQSKD-ADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSK 79 (357)
T ss_pred CHHHHHHHHHcCC-CCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecC
Confidence 7999999888764 2357889999999999998888777778999999999999999999988621 2344566666
Q ss_pred Ccccc-------------------------ccCCCcEEEEchHHhhcccCCChhHH--HHHHHHhcCCccEEEEcCCccc
Q 010991 105 DSKER-------------------------FRGNAGVVVTTYNMVAFGGKRSEESE--KIIEEIRNREWGLLLMDEVHVV 157 (496)
Q Consensus 105 ~~~~~-------------------------~~~~~~IiItT~~~l~~~~~r~~~~~--~~~~~l~~~~~~~vIlDEaH~~ 157 (496)
..... -...+.|++||++++.....+..... ....++ ..+++||+||+|.+
T Consensus 80 ~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~--~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 80 ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY--TKFSTVIFDEFHLY 157 (357)
T ss_pred CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh--cCCCEEEEeccccc
Confidence 52110 01257789999999975533210000 001122 57899999999998
Q ss_pred CchH---------HHHHHHhcc-CccEEEEeecCCCCccchhhhhhh--hCccccc---c-----CHHHHHh----CCCC
Q 010991 158 PAHM---------FRKVISLTK-SHCKLGLTATLVREDERITDLNFL--IGPKLYE---A-----NWLDLVK----GGFI 213 (496)
Q Consensus 158 ~~~~---------~~~~l~~l~-~~~~L~LTATp~r~d~~~~~l~~l--~gp~~~~---~-----~~~~l~~----~g~l 213 (496)
.... +..++.... ..+.+++||||.. .....+... +|..+.. . ...++.. .++-
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 8531 112222211 3488999999952 222233222 2211100 0 0011110 0111
Q ss_pred ---CcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-
Q 010991 214 ---ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR- 289 (496)
Q Consensus 214 ---~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~- 289 (496)
++.....+. ........+. ..++.+.+...+..+.++||||+++..++.++..|+
T Consensus 236 ~~~~~i~~~~~~---~~~~~~~~l~------------------~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~ 294 (357)
T TIGR03158 236 PVLPPVELELIP---APDFKEEELS------------------ELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQ 294 (357)
T ss_pred eeccceEEEEEe---CCchhHHHHH------------------HHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhh
Confidence 112111111 1111111110 122333333322357899999999999999999995
Q ss_pred ------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee------------ccCCCCChhHHHHHccCcC
Q 010991 290 ------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK------------ISSHAGSRRQEAQRLGRIL 341 (496)
Q Consensus 290 ------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~------------i~~~~~s~~~~~Qr~GR~~ 341 (496)
+..+||.+++.+|.++. +.+++|+|+ ++..+.+...|+||+||+|
T Consensus 295 ~~~~~~~~~l~g~~~~~~R~~~~-------~~~iLVaTdv~~rGiDi~~~~vi~~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 295 QGLGDDIGRITGFAPKKDRERAM-------QFDILLGTSTVDVGVDFKRDWLIFSARDAAAFWQRLGRLG 357 (357)
T ss_pred hCCCceEEeeecCCCHHHHHHhc-------cCCEEEEecHHhcccCCCCceEEECCCCHHHHhhhcccCC
Confidence 23589999999987653 568888888 1123568899999999986
No 67
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.7e-24 Score=217.17 Aligned_cols=286 Identities=19% Similarity=0.177 Sum_probs=193.1
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c---------------CCcEEEEEeChHHHHH
Q 010991 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I---------------KKSCLCLATNAVSVDQ 83 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~---------------~~~~LIl~P~~~L~~Q 83 (496)
...-..+.|+|+.+++.+..+ ++.+.+++||+|||...+..+.. + ...+||++||++|+.|
T Consensus 91 ~~~~~~ptpvQk~sip~i~~G---rdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 91 RSGYTKPTPVQKYSIPIISGG---RDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred cccccCCCcceeeccceeecC---CceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 334567999999999965544 38899999999999997665532 1 1368999999999999
Q ss_pred HHHHHHHhhCCCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 84 WAFQFKLWSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 84 w~~e~~~~~~~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.+.+.+++.......++...|+.+. ....+++|+|+|++.|....++. .+...+..++|||||++|.
T Consensus 168 i~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g--------~i~l~~~k~~vLDEADrMl 239 (482)
T KOG0335|consen 168 IYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG--------KISLDNCKFLVLDEADRML 239 (482)
T ss_pred HHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc--------eeehhhCcEEEecchHHhh
Confidence 9999999987777777776666331 13467999999999998775543 2222566799999999999
Q ss_pred c-hHH----HHHHHhcc-----CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHH
Q 010991 159 A-HMF----RKVISLTK-----SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE 228 (496)
Q Consensus 159 ~-~~~----~~~l~~l~-----~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~ 228 (496)
+ ..| ++++.... ..+.+++|||-.+.-.. +.. ..+. +. +....|..--+
T Consensus 240 D~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~---l~~---~fl~---------~~----yi~laV~rvg~-- 298 (482)
T KOG0335|consen 240 DEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQR---LAA---DFLK---------DN----YIFLAVGRVGS-- 298 (482)
T ss_pred hhccccccHHHHhcccCCCCccceeEEEEeccCChhhhh---hHH---HHhh---------cc----ceEEEEeeecc--
Confidence 8 444 55555442 24679999997643222 110 0000 10 11111110000
Q ss_pred HHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHH-Hhh-----hcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCC
Q 010991 229 FFSEYLKKENSKKKQALYVMNPNKFRACEFLIR-FHE-----QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGAT 297 (496)
Q Consensus 229 ~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~-~~~-----~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~ 297 (496)
......+.++++....|...+-.++. ... ....++++||+.+++.++.++..|. +.-|||..
T Consensus 299 -------~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~ 371 (482)
T KOG0335|consen 299 -------TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDR 371 (482)
T ss_pred -------ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchh
Confidence 00001111222222333333333332 110 0123589999999999999999995 45699999
Q ss_pred CHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 298 SHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 298 ~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
++.+|.+.++.|+++ .+.++|+|. .++-+..-..|+||+||+||.|.
T Consensus 372 tq~er~~al~~Fr~g-~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn 433 (482)
T KOG0335|consen 372 TQIEREQALNDFRNG-KAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGN 433 (482)
T ss_pred hhhHHHHHHHHhhcC-CcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCC
Confidence 999999999999999 999999999 34455567889999999999995
No 68
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=1.3e-22 Score=222.33 Aligned_cols=335 Identities=18% Similarity=0.185 Sum_probs=237.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHhc---CCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 18 MELKPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 18 ~~l~~~~~lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
++-.+.+.-.|-|..|+..+... ++.-+-+||++.|.|||-+|+-++-. -++-|.|+|||..|++|.++.|+..
T Consensus 587 F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeR 666 (1139)
T COG1197 587 FEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKER 666 (1139)
T ss_pred HHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHH
Confidence 44556788899999999998653 34446699999999999998887654 4678999999999999999999876
Q ss_pred hCCCCCcEEEEcCCccc---------cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH
Q 010991 92 STIQDDQICRFTSDSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~---------~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~ 162 (496)
+.--+.+|..++.-... .-.+..+|+|.|+..|....+ -.+.|+|||||=|++.-..-
T Consensus 667 F~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~-------------FkdLGLlIIDEEqRFGVk~K 733 (1139)
T COG1197 667 FAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK-------------FKDLGLLIIDEEQRFGVKHK 733 (1139)
T ss_pred hcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcE-------------EecCCeEEEechhhcCccHH
Confidence 54344567665443221 124789999999988865522 26899999999999986655
Q ss_pred HHHHHhcc-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCC-c----ceEEEEEcCCCHHHHHHHHhh
Q 010991 163 RKVISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIA-N----VQCAEVWCPMTKEFFSEYLKK 236 (496)
Q Consensus 163 ~~~l~~l~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~-~----~~~~~v~~~~~~~~~~~yl~~ 236 (496)
.+ ++.++ .-.+|-|||||+-.--. ....-+.+-..|. | ..+.....+.++...+
T Consensus 734 Ek-LK~Lr~~VDvLTLSATPIPRTL~--------------Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ir----- 793 (1139)
T COG1197 734 EK-LKELRANVDVLTLSATPIPRTLN--------------MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIR----- 793 (1139)
T ss_pred HH-HHHHhccCcEEEeeCCCCcchHH--------------HHHhcchhhhhccCCCCCCcceEEEEecCChHHHH-----
Confidence 53 33344 45889999999822111 1111111111111 1 1122222233332222
Q ss_pred hcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHH
Q 010991 237 ENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAF 309 (496)
Q Consensus 237 ~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F 309 (496)
+-|+..+ .+|.++....+.++.++.++..|. +.+.||.|+..+-++++..|
T Consensus 794 --------------------eAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 794 --------------------EAILREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred --------------------HHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHH
Confidence 1222333 578899999999999999999884 67899999999999999999
Q ss_pred hcCCCccEEEEeec-----------------cCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChH
Q 010991 310 KCSRDLNTIFLSKI-----------------SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 372 (496)
Q Consensus 310 ~~~~~~~vlv~s~i-----------------~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e 372 (496)
.++ +++|||+|+| .+.+ -..|..|--||+||.+. .+|.|-++-.+-.-
T Consensus 852 ~~g-~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f-GLsQLyQLRGRVGRS~~-------------~AYAYfl~p~~k~l 916 (1139)
T COG1197 852 YNG-EYDVLVCTTIIETGIDIPNANTIIIERADKF-GLAQLYQLRGRVGRSNK-------------QAYAYFLYPPQKAL 916 (1139)
T ss_pred HcC-CCCEEEEeeeeecCcCCCCCceEEEeccccc-cHHHHHHhccccCCccc-------------eEEEEEeecCcccc
Confidence 999 9999999992 2333 35789999999999774 68999888766555
Q ss_pred HHHHHHHHHHHH---HcCccEEEEeCCCCCCCCCCCCCCCHHHH---------HHHHHHHHh
Q 010991 373 MFYSTKRQQFLI---DQGYSFKVITSLPPPDSGADLSYHRLDEQ---------LALLGKVLS 422 (496)
Q Consensus 373 ~~~~~~r~~~l~---~~g~~~~vi~~~~~~~~~~~~~~~~~~~~---------~~ll~~~l~ 422 (496)
-..+.+|.+.+. +.|-.|++..+..++...+|+.-..+..+ .+||.+...
T Consensus 917 T~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf~LY~~mLeeAI~ 978 (1139)
T COG1197 917 TEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLEEAIA 978 (1139)
T ss_pred CHHHHHHHHHHHhhhhcCchHHHHhcchhccccccccCccccCchheecHHHHHHHHHHHHH
Confidence 567778876665 56888998888778888888877666554 456655443
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=9.7e-23 Score=225.57 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=224.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCC--CC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ--DD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~--~~ 97 (496)
.|++||.+|++.+.++ ++.+|+.+||||||.+.+.++... ..++|+|.|+++|++.+.++|++|..-. ..
T Consensus 70 ~lY~HQ~~A~~~~~~G---~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v 146 (851)
T COG1205 70 RLYSHQVDALRLIREG---RNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKV 146 (851)
T ss_pred cccHHHHHHHHHHHCC---CCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcc
Confidence 4999999999977766 499999999999999987776542 2368999999999999999999986433 36
Q ss_pred cEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-------HHHHH
Q 010991 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------MFRKV 165 (496)
Q Consensus 98 ~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-------~~~~~ 165 (496)
.+..|+|+.+.. ..++++|++|||+||....-|.... ....+ .++.+||+||+|.+... .++++
T Consensus 147 ~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~--~~~~~--~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 147 TFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDA--WLWLL--RNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred eeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcch--HHHHH--hcCcEEEEecceeccccchhHHHHHHHHH
Confidence 778899986532 4578999999999999865554332 22233 45999999999999842 46666
Q ss_pred HHhcc----CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHH
Q 010991 166 ISLTK----SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (496)
Q Consensus 166 l~~l~----~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~ 241 (496)
...+. ....|..|||.....+...+++.... +.+ ....|.-.......++.|........
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f----~~~---v~~~g~~~~~~~~~~~~p~~~~~~~~--------- 286 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATLANPGEFAEELFGRDF----EVP---VDEDGSPRGLRYFVRREPPIRELAES--------- 286 (851)
T ss_pred HHHHhccCCCceEEEEeccccChHHHHHHhcCCcc----eee---ccCCCCCCCceEEEEeCCcchhhhhh---------
Confidence 66665 34789999998765554444322111 111 22344555555666665533221110
Q ss_pred HHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHH----c---C------CCeEEcCCCHHHHHHHHHH
Q 010991 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK----L---R------KPMIYGATSHVERTKILQA 308 (496)
Q Consensus 242 ~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~----L---~------~~~i~G~~~~~eR~~il~~ 308 (496)
.-..+......++...- ..+-++|+|+.+...++.+... + + +..++|++..++|.++...
T Consensus 287 ------~r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~ 359 (851)
T COG1205 287 ------IRRSALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAE 359 (851)
T ss_pred ------cccchHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHH
Confidence 01122334445554443 5789999999999999988622 1 1 4568899999999999999
Q ss_pred HhcCCCccEEEEee---------------ccCCCC-ChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChH
Q 010991 309 FKCSRDLNTIFLSK---------------ISSHAG-SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 372 (496)
Q Consensus 309 F~~~~~~~vlv~s~---------------i~~~~~-s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e 372 (496)
|++| ++.+++.|. ....++ +...+.|+.||+||.++ .+.++.....+..+
T Consensus 360 ~~~g-~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~-------------~~l~~~v~~~~~~d 425 (851)
T COG1205 360 FKEG-ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ-------------ESLVLVVLRSDPLD 425 (851)
T ss_pred HhcC-CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC-------------CceEEEEeCCCccc
Confidence 9999 999999888 234445 77899999999999984 24555555577888
Q ss_pred HHHHHHHHHHHH
Q 010991 373 MFYSTKRQQFLI 384 (496)
Q Consensus 373 ~~~~~~r~~~l~ 384 (496)
.+|......++.
T Consensus 426 ~yy~~~p~~~~~ 437 (851)
T COG1205 426 SYYLRHPEELLE 437 (851)
T ss_pred hhhhhCcHhhhh
Confidence 888776666664
No 70
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=4e-24 Score=214.10 Aligned_cols=303 Identities=17% Similarity=0.161 Sum_probs=184.7
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----------CCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----------~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
.+...|.++|+.++++. +++|-++||+|||+..+.++.. + +.-+||||||++|+.|.++.+.+..
T Consensus 159 ~pTsVQkq~IP~lL~gr---D~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl 235 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGR---DALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLL 235 (708)
T ss_pred ccchHhhcchhhhhcCc---ceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHh
Confidence 46789999999888854 9999999999999997666543 2 1148999999999999999999875
Q ss_pred CCCCCcE-EEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH
Q 010991 93 TIQDDQI-CRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (496)
Q Consensus 93 ~~~~~~v-~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (496)
.-....| +.+.||.+. +++.+.+|+|+||+.|....+.. ..|.-....+||+||++++..-.|.+-+
T Consensus 236 ~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT-------~~i~~s~LRwlVlDEaDrlleLGfekdi 308 (708)
T KOG0348|consen 236 KPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT-------KSIKFSRLRWLVLDEADRLLELGFEKDI 308 (708)
T ss_pred cCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc-------chheeeeeeEEEecchhHHHhccchhhH
Confidence 4322222 345555442 25678999999999998665432 2333356778999999999977665433
Q ss_pred ----HhccC--------------ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCC-CH
Q 010991 167 ----SLTKS--------------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TK 227 (496)
Q Consensus 167 ----~~l~~--------------~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~-~~ 227 (496)
+.+.. ...++||||+.-......++ .+-+|.....+... .+..+.-......|+. ..
T Consensus 309 t~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~-sLkDpv~I~ld~s~---~~~~p~~~a~~ev~~~~~~ 384 (708)
T KOG0348|consen 309 TQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL-SLKDPVYISLDKSH---SQLNPKDKAVQEVDDGPAG 384 (708)
T ss_pred HHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc-cccCceeeeccchh---hhcCcchhhhhhcCCcccc
Confidence 33311 13588999986222211111 12233322211100 0111000000000110 00
Q ss_pred HHHHHHHhhhcHHHHHHhhhhCCCcHH--HHHHHH-HHhhhcCCCeEEEEeccHHHHHHHHHHcC---------------
Q 010991 228 EFFSEYLKKENSKKKQALYVMNPNKFR--ACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR--------------- 289 (496)
Q Consensus 228 ~~~~~yl~~~~~~~~~~l~~~~~~K~~--~l~~ll-~~~~~~~g~kiIVF~~~~~~~~~l~~~L~--------------- 289 (496)
+-+..|. ......+. +..-|.|+. .+..+| ...+.....|+|||..+.+.++-=++.|.
T Consensus 385 ~~l~~~~-iPeqL~qr--y~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~ 461 (708)
T KOG0348|consen 385 DKLDSFA-IPEQLLQR--YTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPD 461 (708)
T ss_pred ccccccc-CcHHhhhc--eEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcc
Confidence 0000000 00000111 122233433 333333 33322345689999888877665554441
Q ss_pred ------------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCc
Q 010991 290 ------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILR 342 (496)
Q Consensus 290 ------------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R 342 (496)
+..+||+|+|++|..+++.|... .-.|++||+ .++.+.++.+|+||+||+.|
T Consensus 462 s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~-~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTAR 540 (708)
T KOG0348|consen 462 SEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS-RRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTAR 540 (708)
T ss_pred cCCChhhhhcceEEEecCchhHHHHHHHHHhhccc-cceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhh
Confidence 34589999999999999999997 556888888 35677899999999999999
Q ss_pred CCC
Q 010991 343 AKG 345 (496)
Q Consensus 343 ~g~ 345 (496)
+|.
T Consensus 541 aG~ 543 (708)
T KOG0348|consen 541 AGE 543 (708)
T ss_pred ccC
Confidence 994
No 71
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.6e-24 Score=203.33 Aligned_cols=286 Identities=15% Similarity=0.136 Sum_probs=203.4
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH-HHhcCC-----cEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA-ACRIKK-----SCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~-~~~~~~-----~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.+-|.|+++++-++.+. +.+.-+-.|+|||-..+.+ +..+.. ..+|+||+++|+-|..+-....+..-+..
T Consensus 107 kPSPiQeesIPiaLtGr---diLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~ 183 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGR---DILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIK 183 (459)
T ss_pred CCCCccccccceeecch---hhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeE
Confidence 58899999999878764 7777799999999885444 444432 58999999999999887777766555567
Q ss_pred EEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc----
Q 010991 99 ICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT---- 169 (496)
Q Consensus 99 v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l---- 169 (496)
+.+.+|+..-. +.+..+++|+||+.+....++. ...+ .+..++|+|||+.+.+..|..+++.+
T Consensus 184 vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg------Va~l--s~c~~lV~DEADKlLs~~F~~~~e~li~~l 255 (459)
T KOG0326|consen 184 VMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG------VADL--SDCVILVMDEADKLLSVDFQPIVEKLISFL 255 (459)
T ss_pred EEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc------cccc--hhceEEEechhhhhhchhhhhHHHHHHHhC
Confidence 77788875421 3567889999999987664432 2222 56779999999999998887666554
Q ss_pred c-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhh
Q 010991 170 K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (496)
Q Consensus 170 ~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~ 248 (496)
+ .+..++.|||.+-.... .+ ..++.++.+...--.++.. ...+...++.
T Consensus 256 P~~rQillySATFP~tVk~-------------------Fm-~~~l~kPy~INLM~eLtl~----------GvtQyYafV~ 305 (459)
T KOG0326|consen 256 PKERQILLYSATFPLTVKG-------------------FM-DRHLKKPYEINLMEELTLK----------GVTQYYAFVE 305 (459)
T ss_pred CccceeeEEecccchhHHH-------------------HH-HHhccCcceeehhhhhhhc----------chhhheeeec
Confidence 3 35788899997522111 11 1122222111111111111 1111112233
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc---C--CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-
Q 010991 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK- 322 (496)
Q Consensus 249 ~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~- 322 (496)
...|..-+..|+..+. -.+.||||+++..++.+|++. + +.++|..|.+++|.++...|++| .++.+|+|+
T Consensus 306 e~qKvhCLntLfskLq---INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVctDL 381 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQ---INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCTDL 381 (459)
T ss_pred hhhhhhhHHHHHHHhc---ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeehhh
Confidence 3445566677776654 568999999999999999976 3 67899999999999999999999 999999999
Q ss_pred --------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcC
Q 010991 323 --------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 323 --------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~ 368 (496)
-++.+.++..|++|+||.||-|. -....+||+-
T Consensus 382 ~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh-------------lGlAInLity 428 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH-------------LGLAINLITY 428 (459)
T ss_pred hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCC-------------cceEEEEEeh
Confidence 25666799999999999999984 4677888864
No 72
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.5e-24 Score=209.25 Aligned_cols=278 Identities=17% Similarity=0.205 Sum_probs=198.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh------------cCCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------------IKKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~------------~~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
++.|.|.+|.+-++.+. +.|.++.||+|||+..+....- .+..+||+.|+++|+-|..-+..++.
T Consensus 242 KPtPIqSQaWPI~LQG~---DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGI---DLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred CCCcchhcccceeecCc---ceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 68999999999777765 8999999999999997654321 12369999999999999999999875
Q ss_pred CCCCCcEEEEcCCccc----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HH
Q 010991 93 TIQDDQICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RK 164 (496)
Q Consensus 93 ~~~~~~v~~~~g~~~~----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~ 164 (496)
--....++++.|+... .+..+..|+|+||+.|.... +-..+.-..+.++|+|||++|.+..| ++
T Consensus 319 yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~--------~~n~i~l~siTYlVlDEADrMLDMgFEpqIrk 390 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQ--------MDNVINLASITYLVLDEADRMLDMGFEPQIRK 390 (629)
T ss_pred hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhh--------hcCeeeeeeeEEEEecchhhhhcccccHHHHH
Confidence 2223457778777653 24577899999999886441 12233336788999999999998755 55
Q ss_pred HHHhccC-ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEc-CCCHHHHHHHHhhhcHHHH
Q 010991 165 VISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC-PMTKEFFSEYLKKENSKKK 242 (496)
Q Consensus 165 ~l~~l~~-~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~-~~~~~~~~~yl~~~~~~~~ 242 (496)
++-.+.+ ...++-|||-+..... | . +.|+.++....+-. .+. ...+.++
T Consensus 391 illdiRPDRqtvmTSATWP~~Vrr---L----------------a-~sY~Kep~~v~vGsLdL~---------a~~sVkQ 441 (629)
T KOG0336|consen 391 ILLDIRPDRQTVMTSATWPEGVRR---L----------------A-QSYLKEPMIVYVGSLDLV---------AVKSVKQ 441 (629)
T ss_pred HhhhcCCcceeeeecccCchHHHH---H----------------H-HHhhhCceEEEeccccee---------eeeeeee
Confidence 5555554 4667778996422111 1 1 22222221111110 000 1111122
Q ss_pred HHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccE
Q 010991 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (496)
Q Consensus 243 ~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~v 317 (496)
.++......|+..++.++..+ +..+|+||||..+..++.|+..|. ...+||.-.+.+|+..++.|++| ++++
T Consensus 442 ~i~v~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrI 518 (629)
T KOG0336|consen 442 NIIVTTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRI 518 (629)
T ss_pred eEEecccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEE
Confidence 222222345677888888877 578999999999999999988874 56799999999999999999999 9999
Q ss_pred EEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 318 IFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 318 lv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
||+|+ -++.+.+...|+||+||+||+|+
T Consensus 519 LvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 519 LVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGR 561 (629)
T ss_pred EEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCC
Confidence 99999 23455688999999999999997
No 73
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1e-23 Score=209.93 Aligned_cols=289 Identities=20% Similarity=0.241 Sum_probs=200.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-h------cC---Cc-EEEEEeChHHHHHHHHHHHHhh
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R------IK---KS-CLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~------~~---~~-~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
.+++|.|-.+++..+.+. .++-.+-||+|||-..+..+. + +. +| .||+|||++|+.|.+.+.++|+
T Consensus 244 ~kptpiq~qalptalsgr---dvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGR---DVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred ccCCcccccccccccccc---cchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 367888999999777664 888889999999988766653 2 11 24 6889999999999999999997
Q ss_pred CCCCCc-EEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHH
Q 010991 93 TIQDDQ-ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (496)
Q Consensus 93 ~~~~~~-v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~ 167 (496)
.....+ |+++.|+.++. +..++.|+|+||+.|..+.+ +....-....++||||+++|.+..|...+.
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk--------mKatn~~rvS~LV~DEadrmfdmGfe~qVr 392 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK--------MKATNLSRVSYLVLDEADRMFDMGFEPQVR 392 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH--------hhcccceeeeEEEEechhhhhccccHHHHH
Confidence 555545 55666665532 45678999999999976533 223333678899999999999887765555
Q ss_pred hc----cC-ccEEEEeecCCCCccchhhhh--hhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 168 LT----KS-HCKLGLTATLVREDERITDLN--FLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 168 ~l----~~-~~~L~LTATp~r~d~~~~~l~--~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
.+ .+ +..|++|||... ++..|. .|.+|+ ......+.+. +..
T Consensus 393 SI~~hirpdrQtllFsaTf~~---kIe~lard~L~dpV------------------rvVqg~vgea-----------n~d 440 (731)
T KOG0339|consen 393 SIKQHIRPDRQTLLFSATFKK---KIEKLARDILSDPV------------------RVVQGEVGEA-----------NED 440 (731)
T ss_pred HHHhhcCCcceEEEeeccchH---HHHHHHHHHhcCCe------------------eEEEeehhcc-----------ccc
Confidence 44 33 478999999752 222221 223332 2222221111 000
Q ss_pred HHHHhhhh-CC-CcHHH-HHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcC
Q 010991 241 KKQALYVM-NP-NKFRA-CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS 312 (496)
Q Consensus 241 ~~~~l~~~-~~-~K~~~-l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~ 312 (496)
-.+.+.++ ++ .|+.. +..|.... ...++|||+.-...++.++..|. +..+||++.+.+|.+++..|+.+
T Consensus 441 ITQ~V~V~~s~~~Kl~wl~~~L~~f~---S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 441 ITQTVSVCPSEEKKLNWLLRHLVEFS---SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred hhheeeeccCcHHHHHHHHHHhhhhc---cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc
Confidence 01111222 11 23332 22333332 24589999999999999999985 77899999999999999999998
Q ss_pred CCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChH
Q 010991 313 RDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 372 (496)
Q Consensus 313 ~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e 372 (496)
...|+++++ ..+-..+...+.||+||.+|+|. ....|+||+..-.+
T Consensus 518 -~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~-------------kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 518 -RKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGE-------------KGVAYTLVTEKDAE 578 (731)
T ss_pred -CCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccc-------------cceeeEEechhhHH
Confidence 899999999 22344577789999999999994 37899999864443
No 74
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=9.8e-23 Score=212.96 Aligned_cols=272 Identities=18% Similarity=0.178 Sum_probs=192.4
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
.+||-|.+++..+++++ +.++++|||.||+++.-.++.-..+.+|||+|..+|+....+.++.. |+ .+..+++
T Consensus 17 ~FR~gQ~evI~~~l~g~---d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~-Gi---~A~~lnS 89 (590)
T COG0514 17 SFRPGQQEIIDALLSGK---DTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAA-GI---RAAYLNS 89 (590)
T ss_pred ccCCCHHHHHHHHHcCC---cEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHc-Cc---eeehhhc
Confidence 67999999999988875 99999999999999988888777889999999999999999999874 33 4555555
Q ss_pred Ccccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc------hHHHH---HH
Q 010991 105 DSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFRK---VI 166 (496)
Q Consensus 105 ~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~------~~~~~---~l 166 (496)
..... ..+..+++..+|+++.+. .+++.+...+..+++|||||++.. +.|++ +.
T Consensus 90 ~l~~~e~~~v~~~l~~g~~klLyisPErl~~~--------~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 90 TLSREERQQVLNQLKSGQLKLLYISPERLMSP--------RFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred ccCHHHHHHHHHHHhcCceeEEEECchhhcCh--------HHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 52211 235678999999999754 567778788999999999999983 34443 33
Q ss_pred HhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhh
Q 010991 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (496)
Q Consensus 167 ~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~ 246 (496)
..++...+++||||-... ...++...++ +....+......-+.-.|+ ....
T Consensus 162 ~~~~~~p~~AlTATA~~~--v~~DI~~~L~----------------l~~~~~~~~sfdRpNi~~~-v~~~---------- 212 (590)
T COG0514 162 AGLPNPPVLALTATATPR--VRDDIREQLG----------------LQDANIFRGSFDRPNLALK-VVEK---------- 212 (590)
T ss_pred hhCCCCCEEEEeCCCChH--HHHHHHHHhc----------------CCCcceEEecCCCchhhhh-hhhc----------
Confidence 445556899998886421 1112211111 1111111111111100111 0000
Q ss_pred hhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 247 ~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
...+.+.. ++.+... ..+...||||.++..++.+++.|. +..+||+++.++|..+.++|..+ ++.++|+|
T Consensus 213 --~~~~~q~~-fi~~~~~-~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiVAT 287 (590)
T COG0514 213 --GEPSDQLA-FLATVLP-QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMVAT 287 (590)
T ss_pred --ccHHHHHH-HHHhhcc-ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEe
Confidence 00111222 4443111 445668999999999999999994 67899999999999999999998 99999999
Q ss_pred e---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 322 K---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 322 ~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
. .+..+.|...|+|-+||+||.|.
T Consensus 288 ~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred ccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 9 35666899999999999999996
No 75
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.90 E-value=8.9e-23 Score=233.32 Aligned_cols=273 Identities=17% Similarity=0.153 Sum_probs=167.7
Q ss_pred EEeCCCCChHHHHHHHH-Hhc---------------CCcEEEEEeChHHHHHHHHHHHHhh----------C--CCCCcE
Q 010991 48 IVLPCGAGKSLVGVSAA-CRI---------------KKSCLCLATNAVSVDQWAFQFKLWS----------T--IQDDQI 99 (496)
Q Consensus 48 l~~~tG~GKTl~~i~~~-~~~---------------~~~~LIl~P~~~L~~Qw~~e~~~~~----------~--~~~~~v 99 (496)
|++|||||||+++..++ ..+ +.++|||+|+++|+.|..+.++..+ + ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57899999999976643 221 2369999999999999998886411 1 134678
Q ss_pred EEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhc-
Q 010991 100 CRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT- 169 (496)
Q Consensus 100 ~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l- 169 (496)
.+++|+.... ....++|+||||++|.....+ +....+ .+..+||+||+|.+.+. .+...+..+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-----k~r~~L--~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~ 153 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-----RARETL--RGVETVIIDEVHAVAGSKRGAHLALSLERLD 153 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-----hhhhhh--ccCCEEEEecHHHhcccccccHHHHHHHHHH
Confidence 8899985422 245789999999999765321 112234 67899999999999853 233333333
Q ss_pred ---c-CccEEEEeecCCCCccchhhhhhhhC-c--c-ccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHH
Q 010991 170 ---K-SHCKLGLTATLVREDERITDLNFLIG-P--K-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (496)
Q Consensus 170 ---~-~~~~L~LTATp~r~d~~~~~l~~l~g-p--~-~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~ 241 (496)
. ..++|+||||..... .+..+++ . . ++. .....+.... +.++.................
T Consensus 154 ~l~~~~~QrIgLSATI~n~e----evA~~L~g~~pv~Iv~--------~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~ 220 (1490)
T PRK09751 154 ALLHTSAQRIGLSATVRSAS----DVAAFLGGDRPVTVVN--------PPAMRHPQIR-IVVPVANMDDVSSVASGTGED 220 (1490)
T ss_pred HhCCCCCeEEEEEeeCCCHH----HHHHHhcCCCCEEEEC--------CCCCcccceE-EEEecCchhhccccccccccc
Confidence 2 347999999986422 2222232 1 1 111 1111111111 222211100000000000000
Q ss_pred HHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC--------------------------------
Q 010991 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------------------------------- 289 (496)
Q Consensus 242 ~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------------------------------- 289 (496)
... ...+.-.-.+...++... ..+.++||||+++..++.++..|+
T Consensus 221 ~~~-~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1490)
T PRK09751 221 SHA-GREGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQ 297 (1490)
T ss_pred cch-hhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccc
Confidence 000 000000001122334333 246789999999999999988774
Q ss_pred ------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCC
Q 010991 290 ------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 290 ------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g 344 (496)
+..+||++++++|..+.+.|++| .++++|+|+ .+..+.|...|+||+||+||..
T Consensus 298 ~~~~~ia~~HHGsLSkeeR~~IE~~fK~G-~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 298 SSDVFIARSHHGSVSKEQRAITEQALKSG-ELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred cccceeeeeccccCCHHHHHHHHHHHHhC-CceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 13578999999999999999999 999999999 3456678899999999999974
No 76
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=211.47 Aligned_cols=298 Identities=16% Similarity=0.140 Sum_probs=197.8
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHH-HHHHHHhc----------------CCc--EEEEEeChHHHHHHH
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV-GVSAACRI----------------KKS--CLCLATNAVSVDQWA 85 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~-~i~~~~~~----------------~~~--~LIl~P~~~L~~Qw~ 85 (496)
.+.|.|...++.+..+. .+.+-+++||+|||++ +|.++..+ +.+ .||++||++|+.|..
T Consensus 203 ~Pt~IQsl~lp~ai~gk--~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIRGK--VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred CCccchhhcccHhhccc--hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 57889999999888764 3888899999999999 66666521 123 899999999999999
Q ss_pred HHHHHhhCCCCCcEEEEcCCcc-----ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch
Q 010991 86 FQFKLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (496)
Q Consensus 86 ~e~~~~~~~~~~~v~~~~g~~~-----~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (496)
+.|...+..+...+..++||.. ..++..++|+|+||+.|....... ..+...| .++.++|+||+++|...
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~---n~~l~~~--k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED---NTHLGNF--KKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh---hhhhhhh--hhceEEEEccHHHHhhh
Confidence 9999887777778888888843 224567899999999987654422 2233333 57789999999999865
Q ss_pred ----HHHHHHHhccC------ccEEEEeecCCCCccchhhhhhhh---C-ccccccCHHHHHh-CCCCCcceEEEEEcCC
Q 010991 161 ----MFRKVISLTKS------HCKLGLTATLVREDERITDLNFLI---G-PKLYEANWLDLVK-GGFIANVQCAEVWCPM 225 (496)
Q Consensus 161 ----~~~~~l~~l~~------~~~L~LTATp~r~d~~~~~l~~l~---g-p~~~~~~~~~l~~-~g~l~~~~~~~v~~~~ 225 (496)
.+.++++.+.. ...|.+|||..-.... .+...- + ..-+......+++ -|+-.++.+. +.
T Consensus 356 ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~--~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkii----D~ 429 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQ--PLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKII----DL 429 (731)
T ss_pred ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcC--hhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeE----ec
Confidence 45667776652 2679999997521110 000000 0 0011111122221 2333333221 22
Q ss_pred CHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHH
Q 010991 226 TKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHV 300 (496)
Q Consensus 226 ~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~ 300 (496)
++... ........++.|....|---|-++|..+ ..++||||++++.+..|+-.|+ ...+|..|.|.
T Consensus 430 t~q~~-----ta~~l~Es~I~C~~~eKD~ylyYfl~ry----PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QK 500 (731)
T KOG0347|consen 430 TPQSA-----TASTLTESLIECPPLEKDLYLYYFLTRY----PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQK 500 (731)
T ss_pred Ccchh-----HHHHHHHHhhcCCccccceeEEEEEeec----CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHH
Confidence 22211 1111222333342234444445555443 4589999999999999999986 34589999999
Q ss_pred HHHHHHHHHhcCCCccEEEEee------------ccCCC---CChhHHHHHccCcCcCCC
Q 010991 301 ERTKILQAFKCSRDLNTIFLSK------------ISSHA---GSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 301 eR~~il~~F~~~~~~~vlv~s~------------i~~~~---~s~~~~~Qr~GR~~R~g~ 345 (496)
.|...+++|++. .--|||+|+ .+-|| .+-..|+||.||+.|++.
T Consensus 501 qRLknLEkF~~~-~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 501 QRLKNLEKFKQS-PSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred HHHHhHHHHhcC-CCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccC
Confidence 999999999997 667888888 11222 344569999999999985
No 77
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.89 E-value=2.5e-23 Score=201.08 Aligned_cols=302 Identities=17% Similarity=0.202 Sum_probs=202.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH----HHh--c--------CCcEEEEEeChHHHHHHHHHH
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA----ACR--I--------KKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~----~~~--~--------~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
-..+.|.|.++++-++++. +.|-.+-||+|||++...+ +.. . +.-.|||||+++|+.|..+-+
T Consensus 190 I~~PTpIQvQGlPvvLsGR---DmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ii 266 (610)
T KOG0341|consen 190 IVHPTPIQVQGLPVVLSGR---DMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDII 266 (610)
T ss_pred CCCCCceeecCcceEeecC---ceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHH
Confidence 3578999999999888764 8888999999999984322 221 1 123699999999999988777
Q ss_pred HHhh------CCCCCcEEEEcCCcc-----ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCccc
Q 010991 89 KLWS------TIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (496)
Q Consensus 89 ~~~~------~~~~~~v~~~~g~~~-----~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~ 157 (496)
..|+ +.|..+.++.-|+.. +....+.+|+|+|++.|..+..+ +.+. | .-..++.+|||+++
T Consensus 267 e~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-----K~~s-L--d~CRyL~lDEADRm 338 (610)
T KOG0341|consen 267 EQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-----KIMS-L--DACRYLTLDEADRM 338 (610)
T ss_pred HHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-----hhcc-H--HHHHHhhhhhHHHH
Confidence 7664 566666666666543 22456789999999988755321 1111 1 23457999999999
Q ss_pred CchHHH----HHHHhccC-ccEEEEeecCCCCccchhhh--hhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHH
Q 010991 158 PAHMFR----KVISLTKS-HCKLGLTATLVREDERITDL--NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230 (496)
Q Consensus 158 ~~~~~~----~~l~~l~~-~~~L~LTATp~r~d~~~~~l--~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~ 230 (496)
.+..|. .+...+++ ...|++|||.++ ++... ..+..|........-+ ..++--+.
T Consensus 339 iDmGFEddir~iF~~FK~QRQTLLFSATMP~---KIQ~FAkSALVKPvtvNVGRAGA---------------AsldViQe 400 (610)
T KOG0341|consen 339 IDMGFEDDIRTIFSFFKGQRQTLLFSATMPK---KIQNFAKSALVKPVTVNVGRAGA---------------ASLDVIQE 400 (610)
T ss_pred hhccchhhHHHHHHHHhhhhheeeeeccccH---HHHHHHHhhcccceEEecccccc---------------cchhHHHH
Confidence 987664 44444554 368999999863 22111 1122222211111000 11222233
Q ss_pred HHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHH
Q 010991 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKI 305 (496)
Q Consensus 231 ~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~i 305 (496)
-+|++ ..+ .+-+|++.+. ....++||||.....++.+.++|- +..|||+-.+++|...
T Consensus 401 vEyVk-------------qEa---KiVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~a 463 (610)
T KOG0341|consen 401 VEYVK-------------QEA---KIVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYA 463 (610)
T ss_pred HHHHH-------------hhh---hhhhHHHHhc-cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHH
Confidence 34542 122 2346666665 667789999999999999999882 6779999999999999
Q ss_pred HHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCC
Q 010991 306 LQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 370 (496)
Q Consensus 306 l~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t 370 (496)
++.|+.| +-+|||+|+ -++-+.....|+||+||+||.|. ....-+++.+.+
T Consensus 464 i~afr~g-kKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~-------------~GiATTfINK~~ 529 (610)
T KOG0341|consen 464 IEAFRAG-KKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGK-------------TGIATTFINKNQ 529 (610)
T ss_pred HHHHhcC-CCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCC-------------cceeeeeecccc
Confidence 9999998 899999999 12333456789999999999884 456667777766
Q ss_pred hHHHHHHHHHHHHHH
Q 010991 371 QEMFYSTKRQQFLID 385 (496)
Q Consensus 371 ~e~~~~~~r~~~l~~ 385 (496)
.+.... -.+..|.+
T Consensus 530 ~esvLl-DLK~LL~E 543 (610)
T KOG0341|consen 530 EESVLL-DLKHLLQE 543 (610)
T ss_pred hHHHHH-HHHHHHHH
Confidence 554332 33344443
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=1.5e-21 Score=203.59 Aligned_cols=309 Identities=16% Similarity=0.170 Sum_probs=209.3
Q ss_pred CCCCCcHHHHHHHHHHHhc---CCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..++|...|+.++..+... ..+-+-+|.++.|||||++|+.++.. .+..+..++||..|++|.+..|.+|+.--
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 4688999999999998753 22235589999999999997666554 46689999999999999999999998654
Q ss_pred CCcEEEEcCCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH
Q 010991 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (496)
Q Consensus 96 ~~~v~~~~g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (496)
+..|...+|..+.. ..+..+|+|.|...+... +.-.+.++||+||=|++.-..-..+.
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~-------------V~F~~LgLVIiDEQHRFGV~QR~~L~ 405 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK-------------VEFHNLGLVIIDEQHRFGVHQRLALR 405 (677)
T ss_pred CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc-------------eeecceeEEEEeccccccHHHHHHHH
Confidence 57788888876532 357799999999877532 22378999999999999877666555
Q ss_pred Hhcc-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHh
Q 010991 167 SLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (496)
Q Consensus 167 ~~l~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l 245 (496)
+.=. .++.|.+||||+-.-- .| ..+|.. +.+- +++---.+..+...|.+.+.
T Consensus 406 ~KG~~~Ph~LvMTATPIPRTL---Al-t~fgDl----dvS~-IdElP~GRkpI~T~~i~~~~------------------ 458 (677)
T COG1200 406 EKGEQNPHVLVMTATPIPRTL---AL-TAFGDL----DVSI-IDELPPGRKPITTVVIPHER------------------ 458 (677)
T ss_pred HhCCCCCcEEEEeCCCchHHH---HH-HHhccc----cchh-hccCCCCCCceEEEEecccc------------------
Confidence 5555 4799999999982111 01 111111 0000 00000001123334433221
Q ss_pred hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHH--------HHHHHHHc-------CCCeEEcCCCHHHHHHHHHHHh
Q 010991 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA--------LTEYAMKL-------RKPMIYGATSHVERTKILQAFK 310 (496)
Q Consensus 246 ~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~--------~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~ 310 (496)
+-++++.+.... ..|+++.+.|.-++. +..++..| ++..+||.|+.+|.++++++|+
T Consensus 459 ------~~~v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk 530 (677)
T COG1200 459 ------RPEVYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFK 530 (677)
T ss_pred ------HHHHHHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHH
Confidence 112334444444 469999999987654 33344444 2678999999999999999999
Q ss_pred cCCCccEEEEee--------------ccCC--CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHH
Q 010991 311 CSRDLNTIFLSK--------------ISSH--AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 374 (496)
Q Consensus 311 ~~~~~~vlv~s~--------------i~~~--~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~ 374 (496)
+| ++++||+|+ +..+ -.-..|.-|--||+||-.. +++++.+|..- .-.
T Consensus 531 ~~-e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~----------qSyC~Ll~~~~-----~~~ 594 (677)
T COG1200 531 EG-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL----------QSYCVLLYKPP-----LSE 594 (677)
T ss_pred cC-CCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc----------ceEEEEEeCCC-----CCh
Confidence 98 999999999 1111 1234678899999999774 55555555322 114
Q ss_pred HHHHHHHHHHHcCccEEEEe
Q 010991 375 YSTKRQQFLIDQGYSFKVIT 394 (496)
Q Consensus 375 ~~~~r~~~l~~~g~~~~vi~ 394 (496)
.+++|-+.+.+---.|.+..
T Consensus 595 ~a~~RL~im~~t~DGF~IAE 614 (677)
T COG1200 595 VAKQRLKIMRETTDGFVIAE 614 (677)
T ss_pred hHHHHHHHHHhcCCcceehh
Confidence 55788888877666666554
No 79
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.88 E-value=7.5e-22 Score=193.89 Aligned_cols=288 Identities=16% Similarity=0.165 Sum_probs=193.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----------CCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----------~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
.+.-.|..|++-++.+. +.+.-+-||+|||.+.+.++.. + +...+|++||++|+.|.+..+.+..
T Consensus 41 kpTlIQs~aIplaLEgK---DvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~ 117 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGK---DVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV 117 (569)
T ss_pred CcchhhhcccchhhcCc---ceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH
Confidence 56778999999999886 8888899999999996555432 1 2368999999999999998887753
Q ss_pred CC-----CCCcEEEEcCC--ccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH--
Q 010991 93 TI-----QDDQICRFTSD--SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (496)
Q Consensus 93 ~~-----~~~~v~~~~g~--~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~-- 163 (496)
.. ...+++.-..+ ....+.+.++|+|+||+.+.....-. .... .....++|+|||+.+.+-.|.
T Consensus 118 ~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~-----~~~~--~~~l~~LVvDEADLllsfGYeed 190 (569)
T KOG0346|consen 118 EYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG-----VLEY--LDSLSFLVVDEADLLLSFGYEED 190 (569)
T ss_pred HHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc-----cchh--hhheeeEEechhhhhhhcccHHH
Confidence 21 11122211111 11224577899999999886552211 1112 257789999999999976554
Q ss_pred --HHHHhccCc-cEEEEeecCCCCccchhhhh--hhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhc
Q 010991 164 --KVISLTKSH-CKLGLTATLVREDERITDLN--FLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (496)
Q Consensus 164 --~~l~~l~~~-~~L~LTATp~r~d~~~~~l~--~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~ 238 (496)
++...++.. ..+++|||.. +.+..|. ++-+|.+...+-.++-.++-+. -..+.|.
T Consensus 191 lk~l~~~LPr~~Q~~LmSATl~---dDv~~LKkL~l~nPviLkl~e~el~~~dqL~---Qy~v~cs-------------- 250 (569)
T KOG0346|consen 191 LKKLRSHLPRIYQCFLMSATLS---DDVQALKKLFLHNPVILKLTEGELPNPDQLT---QYQVKCS-------------- 250 (569)
T ss_pred HHHHHHhCCchhhheeehhhhh---hHHHHHHHHhccCCeEEEeccccCCCcccce---EEEEEec--------------
Confidence 444555443 5689999985 2223333 3346666554443332222222 2223343
Q ss_pred HHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc---C--CCeEEcCCCHHHHHHHHHHHhcCC
Q 010991 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSR 313 (496)
Q Consensus 239 ~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~~ 313 (496)
...|+.+|-.|++..- - ..|+|||+++++.+-.+.-.| + ..++.|.+|..-|..++++|+.|
T Consensus 251 ----------e~DKflllyallKL~L-I-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG- 317 (569)
T KOG0346|consen 251 ----------EEDKFLLLYALLKLRL-I-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG- 317 (569)
T ss_pred ----------cchhHHHHHHHHHHHH-h-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-
Confidence 2233434444443221 2 348999999999877766555 3 46789999999999999999999
Q ss_pred CccEEEEee--------------------------------------------------ccCCCCChhHHHHHccCcCcC
Q 010991 314 DLNTIFLSK--------------------------------------------------ISSHAGSRRQEAQRLGRILRA 343 (496)
Q Consensus 314 ~~~vlv~s~--------------------------------------------------i~~~~~s~~~~~Qr~GR~~R~ 343 (496)
-++++|+|+ -++.+.+...|+||+||++|.
T Consensus 318 ~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg 397 (569)
T KOG0346|consen 318 LYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARG 397 (569)
T ss_pred ceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccC
Confidence 999999998 245556888999999999998
Q ss_pred CCCccccccCCCCceeEEEEEEEcC
Q 010991 344 KGKLEDRMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 344 g~~~~~~~~~~~~~~~~~vy~lvs~ 368 (496)
+. .+.+.++|+.
T Consensus 398 ~n-------------~GtalSfv~P 409 (569)
T KOG0346|consen 398 NN-------------KGTALSFVSP 409 (569)
T ss_pred CC-------------CCceEEEecc
Confidence 84 3567777764
No 80
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=2e-20 Score=179.06 Aligned_cols=310 Identities=19% Similarity=0.240 Sum_probs=205.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHH---HHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 19 ELKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLV---GVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 19 ~l~~~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~---~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
-|.+.++|.|+|+++-+.++.. .+....+|++-||+|||.+ ++..+...+.++.|.+|....+-..+..++.- +
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~a--F 168 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQA--F 168 (441)
T ss_pred eeeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHh--h
Confidence 5778899999999998887654 2335889999999999987 55556667889999999998888888888874 3
Q ss_pred CCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC---chHHHHHHHhc--
Q 010991 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP---AHMFRKVISLT-- 169 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~---~~~~~~~l~~l-- 169 (496)
+...|..++|+....+. ..-|+-||.+.+... ..||++|+||++.++ +++..-.++..
T Consensus 169 ~~~~I~~Lyg~S~~~fr-~plvVaTtHQLlrFk----------------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 169 SNCDIDLLYGDSDSYFR-APLVVATTHQLLRFK----------------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred ccCCeeeEecCCchhcc-ccEEEEehHHHHHHH----------------hhccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 44578899998887665 333445555555322 579999999999998 34444444432
Q ss_pred cCccEEEEeecCCCCccchh---hhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhh
Q 010991 170 KSHCKLGLTATLVREDERIT---DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (496)
Q Consensus 170 ~~~~~L~LTATp~r~d~~~~---~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~ 246 (496)
....+|.|||||.+..+..- .+..+.-|..|. ..-|+-+. -+|+.. +..++
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH--------~~pLpvPk--f~w~~~----~~k~l------------ 285 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLRILKLPARFH--------GKPLPVPK--FVWIGN----WNKKL------------ 285 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCeeEeecchhhc--------CCCCCCCc--eEEecc----HHHHh------------
Confidence 23478999999985433210 111111111111 11111111 133321 11122
Q ss_pred hhCCCcHH-HHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHHhcCCCccEE
Q 010991 247 VMNPNKFR-ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (496)
Q Consensus 247 ~~~~~K~~-~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~~~~~vl 318 (496)
+.+|+. .+...++.+. ..|..++||.+++..++.++..|+ +..+|.... .|.+.+++|++| ++.+|
T Consensus 286 --~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G-~~~lL 359 (441)
T COG4098 286 --QRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDG-KITLL 359 (441)
T ss_pred --hhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcC-ceEEE
Confidence 111211 2334444444 678899999999999999999983 456777765 799999999999 99999
Q ss_pred EEeecc---------------CC--CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHH
Q 010991 319 FLSKIS---------------SH--AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 381 (496)
Q Consensus 319 v~s~i~---------------~~--~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~ 381 (496)
|.|+|+ ++ ..+...++|..||+||.-.. | .|...||..=+ |..|.-+.+..+
T Consensus 360 iTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~-------P-tGdv~FFH~G~---skaM~~A~keIk 428 (441)
T COG4098 360 ITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLER-------P-TGDVLFFHYGK---SKAMKQARKEIK 428 (441)
T ss_pred EEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcC-------C-CCcEEEEeccc---hHHHHHHHHHHH
Confidence 999821 11 14667889999999998742 3 45555555433 566777777677
Q ss_pred HHHHcCccE
Q 010991 382 FLIDQGYSF 390 (496)
Q Consensus 382 ~l~~~g~~~ 390 (496)
.+...|+..
T Consensus 429 ~MN~lg~k~ 437 (441)
T COG4098 429 EMNKLGFKR 437 (441)
T ss_pred HHHHHhhhc
Confidence 776666543
No 81
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.88 E-value=7.1e-21 Score=205.50 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhcCCCcceEEEeCCCCChHHHH-------------HHHHHh-----cCCcEEEEEeChHHHHHHHHHHHH
Q 010991 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG-------------VSAACR-----IKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~-------------i~~~~~-----~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
.|++.++.+..+. +.++.++||+|||.+. +..+.. ...+++|++|+++|+.|+..++.+
T Consensus 168 iQ~qil~~i~~gk---dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 168 VQLKIFEAWISRK---PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHhCC---CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 4777777766664 8999999999999872 111111 124799999999999999999987
Q ss_pred hhCC---CCCcEEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH--
Q 010991 91 WSTI---QDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-- 161 (496)
Q Consensus 91 ~~~~---~~~~v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~-- 161 (496)
..+. .+..+.+..|+..+. .....+|+|+|.+... ..+ ..+++||+||||......
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l-------------~~L--~~v~~VVIDEaHEr~~~~Dl 309 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL-------------NKL--FDYGTVIIDEVHEHDQIGDI 309 (675)
T ss_pred HhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc-------------ccc--ccCCEEEccccccCccchhH
Confidence 5543 344566666655421 1124679999975321 112 578999999999987542
Q ss_pred HHHHHHhcc-C-ccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCC-CCcceEEEEEcCCCHHHHHHHHhhh
Q 010991 162 FRKVISLTK-S-HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGF-IANVQCAEVWCPMTKEFFSEYLKKE 237 (496)
Q Consensus 162 ~~~~l~~l~-~-~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~-l~~~~~~~v~~~~~~~~~~~yl~~~ 237 (496)
...++..+. . ++.+++|||+...- ..+..+++ |..... .|- ..++....+.....+.....|...
T Consensus 310 lL~llk~~~~~~rq~ILmSATl~~dv---~~l~~~~~~p~~I~I-------~grt~~pV~~~yi~~~~~~~~~~~y~~~- 378 (675)
T PHA02653 310 IIAVARKHIDKIRSLFLMTATLEDDR---DRIKEFFPNPAFVHI-------PGGTLFPISEVYVKNKYNPKNKRAYIEE- 378 (675)
T ss_pred HHHHHHHhhhhcCEEEEEccCCcHhH---HHHHHHhcCCcEEEe-------CCCcCCCeEEEEeecCcccccchhhhHH-
Confidence 222332222 2 36899999985322 22333343 333222 121 223322222222111111122200
Q ss_pred cHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHH-
Q 010991 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAF- 309 (496)
Q Consensus 238 ~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F- 309 (496)
.|..++..+..... ..+.++|||++++..++.+++.|. +..+||++++. ++.+++|
T Consensus 379 -------------~k~~~l~~L~~~~~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff 442 (675)
T PHA02653 379 -------------EKKNIVTALKKYTP-PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVY 442 (675)
T ss_pred -------------HHHHHHHHHHHhhc-ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHh
Confidence 01122233332211 235689999999999999998874 34589999974 5677787
Q ss_pred hcCCCccEEEEee-------------cc-C----CC---------CChhHHHHHccCcCcCC
Q 010991 310 KCSRDLNTIFLSK-------------IS-S----HA---------GSRRQEAQRLGRILRAK 344 (496)
Q Consensus 310 ~~~~~~~vlv~s~-------------i~-~----~~---------~s~~~~~Qr~GR~~R~g 344 (496)
+++ +.++||+|+ ++ . .+ -|..++.||.||+||..
T Consensus 443 ~~g-k~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~ 503 (675)
T PHA02653 443 SSK-NPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS 503 (675)
T ss_pred ccC-ceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC
Confidence 576 889999888 11 1 11 27889999999999996
No 82
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.87 E-value=2.8e-22 Score=204.46 Aligned_cols=283 Identities=17% Similarity=0.166 Sum_probs=203.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-hc-----CCcEEEEEeChHHHHHHHHHHHHhhC-CCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-----KKSCLCLATNAVSVDQWAFQFKLWST-IQD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~-~~~ 96 (496)
..+.+.|..|++.++.+. +.||.+-.|+|||++...++. .+ ..-.+||+||++|+-|..+.|...+. +.+
T Consensus 46 ~~ptkiQaaAIP~~~~km---DliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 46 ALPTKIQAAAIPAIFSKM---DLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred cCCCchhhhhhhhhhccc---ceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 356889999999888876 899999999999999554443 32 23589999999999999999998752 356
Q ss_pred CcEEEEcCCccccc----cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-hHHHHHHH----
Q 010991 97 DQICRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRKVIS---- 167 (496)
Q Consensus 97 ~~v~~~~g~~~~~~----~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~~l~---- 167 (496)
....+|-||..-.. -..+.|+|+||+.|....+ ...+.-.++.++|+|||+.+.. ..|+.-++
T Consensus 123 ~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~e--------l~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~ 194 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVE--------LGAMNMSHVRLFVLDEADKLMDTESFQDDINIIIN 194 (980)
T ss_pred cceEEEecCchhhhhhhhhhhceEEecCchHHHHHHH--------hcCCCccceeEEEeccHHhhhchhhHHHHHHHHHH
Confidence 67888888854221 2457899999999875532 2334446788999999999987 46665444
Q ss_pred hccC-ccEEEEeecCCCCccchhhhhh-hhCccccccCHHHHHhCCCCCcceEEEEEcCCC--HHHHHHHHhhhcHHHHH
Q 010991 168 LTKS-HCKLGLTATLVREDERITDLNF-LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT--KEFFSEYLKKENSKKKQ 243 (496)
Q Consensus 168 ~l~~-~~~L~LTATp~r~d~~~~~l~~-l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~--~~~~~~yl~~~~~~~~~ 243 (496)
.++. ..++++|||-.++.+. .|.. +-.|.+.+.+..+.. .+--.+++...|..+ -+..+.
T Consensus 195 slP~~rQv~a~SATYp~nLdn--~Lsk~mrdp~lVr~n~~d~~---L~GikQyv~~~~s~nnsveemrl----------- 258 (980)
T KOG4284|consen 195 SLPQIRQVAAFSATYPRNLDN--LLSKFMRDPALVRFNADDVQ---LFGIKQYVVAKCSPNNSVEEMRL----------- 258 (980)
T ss_pred hcchhheeeEEeccCchhHHH--HHHHHhcccceeecccCCce---eechhheeeeccCCcchHHHHHH-----------
Confidence 4443 4789999998776543 2322 233544444443332 111122333333322 111111
Q ss_pred HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEE
Q 010991 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (496)
Q Consensus 244 ~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vl 318 (496)
|++.|..++... +-.+.||||+....++.++..|. +.+|.|.|++.+|..+++.+++- .+++|
T Consensus 259 --------klq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rIL 326 (980)
T KOG4284|consen 259 --------KLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRIL 326 (980)
T ss_pred --------HHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEE
Confidence 346667777554 36789999999999999999995 67899999999999999999997 89999
Q ss_pred EEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 319 FLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 319 v~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
|.|+ -++.+.+...|.||+||+||-|.
T Consensus 327 VsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~ 368 (980)
T KOG4284|consen 327 VSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGA 368 (980)
T ss_pred EecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccc
Confidence 9998 24556677889999999999994
No 83
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=3.5e-21 Score=206.00 Aligned_cols=309 Identities=16% Similarity=0.177 Sum_probs=192.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-C------------CcEEEEEeChHHHHHHHHHHHHh
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K------------KSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-~------------~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+.-.|.++++-++..+ .|.+|++|||+|||.+++..+.+. + -++++|+|.++|+....+.|.+-
T Consensus 110 ~fN~iQS~vFp~aY~Sn--eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kk 187 (1230)
T KOG0952|consen 110 EFNRIQSEVFPVAYKSN--ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKK 187 (1230)
T ss_pred HHHHHHHHhhhhhhcCC--CCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhh
Confidence 35667899999888765 599999999999999987766542 2 27999999999999888777765
Q ss_pred hCCCCCcEEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHHHH
Q 010991 92 STIQDDQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVI 166 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l 166 (496)
++--+..|..++|+..-. --..++|+||||+..--..+++... ..++ ..+.+||+||+|.+..+ ....++
T Consensus 188 l~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d---~~l~--~~V~LviIDEVHlLhd~RGpvlEtiV 262 (1230)
T KOG0952|consen 188 LAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGD---SALF--SLVRLVIIDEVHLLHDDRGPVLETIV 262 (1230)
T ss_pred cccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccc---hhhh--hheeeEEeeeehhhcCcccchHHHHH
Confidence 443356788899996521 1245889999999876554444322 2233 56789999999999854 333333
Q ss_pred Hhc--------cCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCC-cceEEEEEcCCCHHHHHHHHhhh
Q 010991 167 SLT--------KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIA-NVQCAEVWCPMTKEFFSEYLKKE 237 (496)
Q Consensus 167 ~~l--------~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~-~~~~~~v~~~~~~~~~~~yl~~~ 237 (496)
.+. ..-+.+|||||.+...+ +..+++-..+.- .- ...++|.+ |.....+-++.. .
T Consensus 263 aRtlr~vessqs~IRivgLSATlPN~eD----vA~fL~vn~~~g-lf-sFd~~yRPvpL~~~~iG~k~~-~--------- 326 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLPNYED----VARFLRVNPYAG-LF-SFDQRYRPVPLTQGFIGIKGK-K--------- 326 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCCCHHH----HHHHhcCCCccc-ee-eecccccccceeeeEEeeecc-c---------
Confidence 322 22378999999975433 332222110000 00 00112221 111111111111 0
Q ss_pred cHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC----------------------------
Q 010991 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---------------------------- 289 (496)
Q Consensus 238 ~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~---------------------------- 289 (496)
.+.....+... ..+.+++++ .+|++++||++++...-..|+.|.
T Consensus 327 ---~~~~~~~~d~~---~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g 398 (1230)
T KOG0952|consen 327 ---NRQQKKNIDEV---CYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQG 398 (1230)
T ss_pred ---chhhhhhHHHH---HHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhh
Confidence 00000011111 123444555 589999999999887777766661
Q ss_pred CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------ccCCC-------C-----ChhHHHHHccCcCcCC
Q 010991 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------ISSHA-------G-----SRRQEAQRLGRILRAK 344 (496)
Q Consensus 290 ~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~~~~-------~-----s~~~~~Qr~GR~~R~g 344 (496)
..+.|.++...+|.-+.+.|+.| .++++++|. +...+ + ..-+.+|..||+||+.
T Consensus 399 ~~iHhAGm~r~DR~l~E~~F~~G-~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 399 MGIHHAGMLRSDRQLVEKEFKEG-HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred hhhcccccchhhHHHHHHHHhcC-CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 45678999999999999999999 899999988 11000 1 2235689999999998
Q ss_pred CCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 345 ~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
=.+ .+..+-+.+.|+..-|.+
T Consensus 478 Fd~-----------~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 478 FDS-----------SGEGIIITTRDKLDHYES 498 (1230)
T ss_pred CCC-----------CceEEEEecccHHHHHHH
Confidence 432 345554555555544443
No 84
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=202.78 Aligned_cols=374 Identities=20% Similarity=0.252 Sum_probs=231.3
Q ss_pred CCcHHHHHHHHHHHhc----------CCCcceEEEeCCCCChHHHHHHHHHh-----cCCcEEEEEeChHHHHHHHHHHH
Q 010991 25 QPRPYQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~~~~-----~~~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
.+.|||.-+++.++.| ..+-+|||+..||+|||++.+.++.- ..+.||+|+|-.+| .+|..||.
T Consensus 254 v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTl-QNWlsEfn 332 (1387)
T KOG1016|consen 254 VLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTL-QNWLSEFN 332 (1387)
T ss_pred hcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHH-HHHHHHhh
Confidence 5899999988876533 12357999999999999997766532 24689999999985 77999999
Q ss_pred HhhCC-C--------CCcEEEEcCCccc---------cccCCCcEEEEchHHhhccc--------------CCC------
Q 010991 90 LWSTI-Q--------DDQICRFTSDSKE---------RFRGNAGVVVTTYNMVAFGG--------------KRS------ 131 (496)
Q Consensus 90 ~~~~~-~--------~~~v~~~~g~~~~---------~~~~~~~IiItT~~~l~~~~--------------~r~------ 131 (496)
.|.-- + ...|.++..+.+- .+-...+|++.-|+|++-.. +|.
T Consensus 333 mWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~ 412 (1387)
T KOG1016|consen 333 MWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIK 412 (1387)
T ss_pred hhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccC
Confidence 99521 0 1234444444331 12345679999999976441 221
Q ss_pred ----hhHHHH----HHHHhcCCccEEEEcCCcccCch--HHHHHHHhccCccEEEEeecCCCCccchh--hh--------
Q 010991 132 ----EESEKI----IEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT--DL-------- 191 (496)
Q Consensus 132 ----~~~~~~----~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~l~~~~~L~LTATp~r~d~~~~--~l-------- 191 (496)
...+.. ...|.....++||+||.|++++- .....+..++..++|.|||-|.++.-..- .+
T Consensus 413 ~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~yL 492 (1387)
T KOG1016|consen 413 DDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKYL 492 (1387)
T ss_pred CchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecccccc
Confidence 001122 23344567899999999999975 55667888999999999999996543311 11
Q ss_pred -------hhhhCccc----cccCHHH-------------HH-----h------CCCCCcceEEEEEcCCCHHH---HHHH
Q 010991 192 -------NFLIGPKL----YEANWLD-------------LV-----K------GGFIANVQCAEVWCPMTKEF---FSEY 233 (496)
Q Consensus 192 -------~~l~gp~~----~~~~~~~-------------l~-----~------~g~l~~~~~~~v~~~~~~~~---~~~y 233 (496)
+.+-.|+. ...+..| |. . +..|+......+-+.++.-+ |+.|
T Consensus 493 GTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~F 572 (1387)
T KOG1016|consen 493 GTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLYRNF 572 (1387)
T ss_pred chHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHHHHH
Confidence 00111110 0001111 00 0 12222223333334443322 2222
Q ss_pred H-h--hh---------cHH--------------------HH------HHhh-----------------------------
Q 010991 234 L-K--KE---------NSK--------------------KK------QALY----------------------------- 246 (496)
Q Consensus 234 l-~--~~---------~~~--------------------~~------~~l~----------------------------- 246 (496)
+ . +. +.. ++ ..+.
T Consensus 573 m~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laS 652 (1387)
T KOG1016|consen 573 MLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLAS 652 (1387)
T ss_pred HHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccc
Confidence 1 0 00 000 00 0000
Q ss_pred ------------------------hhCCCcH-HHHHHHH---------------------HHhhhcCCCeEEEEeccHHH
Q 010991 247 ------------------------VMNPNKF-RACEFLI---------------------RFHEQQRGDKIIVFADNLFA 280 (496)
Q Consensus 247 ------------------------~~~~~K~-~~l~~ll---------------------~~~~~~~g~kiIVF~~~~~~ 280 (496)
..+..|. +...+++ +..- .-|.++|||+++...
T Consensus 653 s~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~-~~g~kil~fSq~l~~ 731 (1387)
T KOG1016|consen 653 STSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDEST-QIGEKILIFSQNLTA 731 (1387)
T ss_pred hhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeecccc-ccCceEEEeecchhH
Confidence 0000011 1111122 1111 457899999999999
Q ss_pred HHHHHHHcC-----------------------CCeEEcCCCHHHHHHHHHHHhcCCCccEE-EEee--------------
Q 010991 281 LTEYAMKLR-----------------------KPMIYGATSHVERTKILQAFKCSRDLNTI-FLSK-------------- 322 (496)
Q Consensus 281 ~~~l~~~L~-----------------------~~~i~G~~~~~eR~~il~~F~~~~~~~vl-v~s~-------------- 322 (496)
++.+.+.|+ +..++|.++..+|++++++|++.+.+.-+ ++|+
T Consensus 732 Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr 811 (1387)
T KOG1016|consen 732 LDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANR 811 (1387)
T ss_pred HHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccce
Confidence 999999883 23478999999999999999998777733 4434
Q ss_pred --ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHHHcCccEEEEeCCCCCC
Q 010991 323 --ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPD 400 (496)
Q Consensus 323 --i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~vi~~~~~~~ 400 (496)
|++..|++.-.+|++.|+.|.| |.+.+|||+||...+.|.++..+ ....||.+-+|+.+..-
T Consensus 812 ~~ifda~wnpchdaqavcRvyrYG-----------Q~KpcfvYRlVmD~~lEkkIydR---QIsKqGmsdRvVDd~np-- 875 (1387)
T KOG1016|consen 812 CIIFDACWNPCHDAQAVCRVYRYG-----------QQKPCFVYRLVMDNSLEKKIYDR---QISKQGMSDRVVDDANP-- 875 (1387)
T ss_pred EEEEEeecCccccchhhhhhhhhc-----------CcCceeEEeehhhhhhHHHHHHH---HHhhccchhhhhcccCc--
Confidence 6677789999999999999999 66689999999999999988754 35678888788765432
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q 010991 401 SGADLSYHRLDEQLALLGKV 420 (496)
Q Consensus 401 ~~~~~~~~~~~~~~~ll~~~ 420 (496)
.+ .-+.++...||+..
T Consensus 876 ---~a-n~s~Ke~enLl~~~ 891 (1387)
T KOG1016|consen 876 ---DA-NISQKELENLLMYD 891 (1387)
T ss_pred ---cc-cccHHHHHHHhhhh
Confidence 22 33455666777654
No 85
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.7e-20 Score=181.02 Aligned_cols=303 Identities=17% Similarity=0.172 Sum_probs=197.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHH-HHHHhcC-----CcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-SAACRIK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i-~~~~~~~-----~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.+-..|+.|++-++.+. +++.|-.+..|+|||.+.. +.+++.. .-++.|+|+++|+.|.-+-+.+-..+....
T Consensus 112 kPskIQe~aLPlll~~P-p~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~it 190 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEP-PQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELT 190 (477)
T ss_pred CcchHHHhhcchhhcCC-chhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeee
Confidence 46678999999777663 4688888999999998854 4444442 358888999999999988888765444333
Q ss_pred EEE-EcCCcccc-ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HH----HHHHHhcc-
Q 010991 99 ICR-FTSDSKER-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MF----RKVISLTK- 170 (496)
Q Consensus 99 v~~-~~g~~~~~-~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~----~~~l~~l~- 170 (496)
+.. +-++...+ -.-..+|+|.|++.+..... .+..+.-.+..++|+|||+++.+. .| .++...++
T Consensus 191 a~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~-------klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~ 263 (477)
T KOG0332|consen 191 ASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLML-------KLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR 263 (477)
T ss_pred EEEEecCcccccCCcchhheeeCCCccHHHHHH-------HHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC
Confidence 332 33331111 11236799999998864422 123333467789999999999864 22 34555566
Q ss_pred CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEc--CCCHHHHHHHHhhhcHHHHHHhhhh
Q 010991 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC--PMTKEFFSEYLKKENSKKKQALYVM 248 (496)
Q Consensus 171 ~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~--~~~~~~~~~yl~~~~~~~~~~l~~~ 248 (496)
....|++|||-...... ....++++.....+.. ---...++.|+ +...
T Consensus 264 ~~QllLFSATf~e~V~~--------------------Fa~kivpn~n~i~Lk~eel~L~~IkQlyv----------~C~~ 313 (477)
T KOG0332|consen 264 NQQLLLFSATFVEKVAA--------------------FALKIVPNANVIILKREELALDNIKQLYV----------LCAC 313 (477)
T ss_pred cceEEeeechhHHHHHH--------------------HHHHhcCCCceeeeehhhccccchhhhee----------eccc
Confidence 45788999997421110 0012222222111110 00011122222 1122
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-
Q 010991 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK- 322 (496)
Q Consensus 249 ~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~- 322 (496)
...|++++..|..... -.+.||||.++..+..++..|. +..+||.+..++|..++++|+.| ..+|||.|.
T Consensus 314 ~~~K~~~l~~lyg~~t---igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVLitTnV 389 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLT---IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVLITTNV 389 (477)
T ss_pred hhhHHHHHHHHHhhhh---hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEEEEech
Confidence 3457788777664432 4578999999999999999994 78899999999999999999999 899999988
Q ss_pred ------------------c--cCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHH
Q 010991 323 ------------------I--SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 382 (496)
Q Consensus 323 ------------------i--~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~ 382 (496)
+ ...-.++..|+||+||+||-|+ .+..+++|+.+ ..+.+..+-|..
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGk-------------kG~a~n~v~~~-~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGK-------------KGLAINLVDDK-DSMNIMNKIQKH 455 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccc-------------cceEEEeeccc-CcHHHHHHHHHH
Confidence 1 1122467889999999999995 46777888643 233333444554
Q ss_pred H
Q 010991 383 L 383 (496)
Q Consensus 383 l 383 (496)
+
T Consensus 456 F 456 (477)
T KOG0332|consen 456 F 456 (477)
T ss_pred H
Confidence 4
No 86
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.86 E-value=4.1e-21 Score=190.98 Aligned_cols=198 Identities=17% Similarity=0.240 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhc----------CCCcceEEEeCCCCChHHHHHHHHHhc---C-----CcEEEEEeChHHHHHHHHHHHH
Q 010991 29 YQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACRI---K-----KSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 29 yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~~~~~---~-----~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
||.+|+.+|+.. ...++++|+++||+|||+++++++..+ . +++|||||++ ++.||..||.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~-l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSS-LLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TT-THHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccc-hhhhhhhhhcc
Confidence 899999988643 345799999999999999999988742 1 2599999995 78999999999
Q ss_pred hhCCCCCcEEEEcCCc-----cccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHH
Q 010991 91 WSTIQDDQICRFTSDS-----KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFR 163 (496)
Q Consensus 91 ~~~~~~~~v~~~~g~~-----~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~ 163 (496)
|+......+..+.+.. ........+|+|+||+.+..... ....+.+...+|++||+||+|.+++. ...
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~-----~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~ 154 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARK-----KKDKEDLKQIKWDRVIVDEAHRLKNKDSKRY 154 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TS-----THTTHHHHTSEEEEEEETTGGGGTTTTSHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccc-----cccccccccccceeEEEeccccccccccccc
Confidence 9743355788888776 11134568899999999982111 11234555678999999999999864 334
Q ss_pred HHHHhccCccEEEEeecCCCCccch-hhhhhhhCccc----------------------------------cccCHHHHH
Q 010991 164 KVISLTKSHCKLGLTATLVREDERI-TDLNFLIGPKL----------------------------------YEANWLDLV 208 (496)
Q Consensus 164 ~~l~~l~~~~~L~LTATp~r~d~~~-~~l~~l~gp~~----------------------------------~~~~~~~l~ 208 (496)
+.+..+.+.++++|||||..++-.. ..+..+++|.. .+....++
T Consensus 155 ~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~- 233 (299)
T PF00176_consen 155 KALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDV- 233 (299)
T ss_dssp HHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGG-
T ss_pred ccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhhcccc-
Confidence 4566688899999999999764321 12223333332 22222232
Q ss_pred hCCCCCcceEEEEEcCCCHHHHHHHH
Q 010991 209 KGGFIANVQCAEVWCPMTKEFFSEYL 234 (496)
Q Consensus 209 ~~g~l~~~~~~~v~~~~~~~~~~~yl 234 (496)
...+++.....+.++|++++...|.
T Consensus 234 -~~~lp~~~~~~~~~~ls~~q~~~Y~ 258 (299)
T PF00176_consen 234 -EKELPPKIEHVINVELSPEQRELYN 258 (299)
T ss_dssp -CTTSTCEEEEEEEEGG-HHHHHHHH
T ss_pred -cccCCceEEEEEEeCCCHHHHHHHH
Confidence 3457788888899999998877776
No 87
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.86 E-value=6.6e-20 Score=202.44 Aligned_cols=276 Identities=19% Similarity=0.155 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCC-CCcEEEEcCCc
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ-DDQICRFTSDS 106 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~-~~~v~~~~g~~ 106 (496)
.+.+. .+.++ ...|++++||+|||.+...++.. ...+++|+.|+++++.|..+.+....+.. +..|+...+..
T Consensus 8 ~~i~~-~l~~~--~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 8 PALRD-ALAAH--PQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHH-HHHcC--CcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 33444 44443 48999999999999997665543 24589999999999999999987654432 23344322222
Q ss_pred cccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcc-cCchH----H-HHHHHhccC-ccEEEEee
Q 010991 107 KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAHM----F-RKVISLTKS-HCKLGLTA 179 (496)
Q Consensus 107 ~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~-~~~~~----~-~~~l~~l~~-~~~L~LTA 179 (496)
. .......|+|+|++.|....... ..-..+++|||||+|. ..+.. + ..+...++. .+.|++||
T Consensus 85 ~-~~s~~t~I~v~T~G~Llr~l~~d---------~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 85 N-KVSRRTRLEVVTEGILTRMIQDD---------PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred c-ccCCCCcEEEECCcHHHHHHhhC---------cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 1 13345789999999887543211 1126889999999994 55432 2 233333433 36789999
Q ss_pred cCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHH
Q 010991 180 TLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEF 258 (496)
Q Consensus 180 Tp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ 258 (496)
|+... .+..+++ +.+... .|-..++. ..+.+..... ++. .. ....+..
T Consensus 155 Tl~~~-----~l~~~l~~~~vI~~-------~gr~~pVe--~~y~~~~~~~---~~~------~~--------v~~~l~~ 203 (819)
T TIGR01970 155 TLDGE-----RLSSLLPDAPVVES-------EGRSFPVE--IRYLPLRGDQ---RLE------DA--------VSRAVEH 203 (819)
T ss_pred CCCHH-----HHHHHcCCCcEEEe-------cCcceeee--eEEeecchhh---hHH------HH--------HHHHHHH
Confidence 98532 1233343 222111 12111222 1222221111 010 00 0012233
Q ss_pred HHHHhhhcCCCeEEEEeccHHHHHHHHHHcC--------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--------
Q 010991 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------- 322 (496)
Q Consensus 259 ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------- 322 (496)
++. ..+.++|||+++...++.+++.|. +..+||++++++|.++++.|++| ..++||+|+
T Consensus 204 ~l~----~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkVlVATnIAErgItI 278 (819)
T TIGR01970 204 ALA----SETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKVVLATNIAETSLTI 278 (819)
T ss_pred HHH----hcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEEEEecchHhhcccc
Confidence 332 224689999999999988888773 34589999999999999999998 889999988
Q ss_pred ------ccCC-------------------CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCC
Q 010991 323 ------ISSH-------------------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 323 ------i~~~-------------------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
|.+. +-|..++.||.||+||.++ +..|+|.++.
T Consensus 279 p~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~--------------G~cyrL~t~~ 336 (819)
T TIGR01970 279 EGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEP--------------GVCYRLWSEE 336 (819)
T ss_pred cCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCC--------------CEEEEeCCHH
Confidence 1000 1255678999999999973 4567777643
No 88
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.86 E-value=3.2e-21 Score=207.80 Aligned_cols=291 Identities=17% Similarity=0.145 Sum_probs=195.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH-Hhc---------CC-cEEEEEeChHHHHHHHHHHHHhhC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI---------KK-SCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~-~~~---------~~-~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
+++|.|..|++.++.+. ++|.++-||+|||+..+.++ .+. .+ -+||||||++|+.|..+++.+|+.
T Consensus 387 k~~~IQ~qAiP~ImsGr---dvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k 463 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGR---DVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLK 463 (997)
T ss_pred CCcchhhhhcchhccCc---ceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 78999999999888775 99999999999999975544 332 12 379999999999999999999876
Q ss_pred CCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HH
Q 010991 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RK 164 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~ 164 (496)
..+..+...+|+... .+..++.|+|+|++.+....--+. .....-+...++|+|||+++....| ..
T Consensus 464 ~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~-----grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 464 LLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANS-----GRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred hcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcC-----CccccccccceeeechhhhhheeccCcccch
Confidence 555565555555331 234569999999986654321110 0111114566999999999985422 23
Q ss_pred HHHhccCc-cEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHH
Q 010991 165 VISLTKSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (496)
Q Consensus 165 ~l~~l~~~-~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~ 243 (496)
+++.+.+. ..+++|||.+|.-.. + --+.++ .|+. +-|....-.+ ....+.
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~~---l---a~~vl~-------------~Pve---iiv~~~svV~-------k~V~q~ 589 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSMEA---L---ARKVLK-------------KPVE---IIVGGRSVVC-------KEVTQV 589 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHHH---H---HHHhhc-------------CCee---EEEccceeEe-------ccceEE
Confidence 77777654 678889998764111 1 111111 1111 1111100000 001111
Q ss_pred Hhhhh-CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccE
Q 010991 244 ALYVM-NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (496)
Q Consensus 244 ~l~~~-~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~v 317 (496)
+..+. .+.||.-+..||... ....++||||++...++.+.+.|. +..+||+.++.+|..+++.|+++ .+++
T Consensus 590 v~V~~~e~eKf~kL~eLl~e~--~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~-~~~L 666 (997)
T KOG0334|consen 590 VRVCAIENEKFLKLLELLGER--YEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG-VVNL 666 (997)
T ss_pred EEEecCchHHHHHHHHHHHHH--hhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc-CceE
Confidence 11122 345777777777544 236799999999999999999994 33499999999999999999998 8999
Q ss_pred EEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcC
Q 010991 318 IFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 318 lv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~ 368 (496)
|++|+ .++.+.-..+|++|+||++|+|+ ....|+|++.
T Consensus 667 LvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragr-------------kg~AvtFi~p 719 (997)
T KOG0334|consen 667 LVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGR-------------KGAAVTFITP 719 (997)
T ss_pred EEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCc-------------cceeEEEeCh
Confidence 99998 12233334569999999999996 2367777776
No 89
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.86 E-value=2.4e-21 Score=178.29 Aligned_cols=158 Identities=23% Similarity=0.426 Sum_probs=108.6
Q ss_pred CCCcHHHHHHHHHHHhc---C-CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 24 AQPRPYQEKSLSKMFGN---G-RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~---~-~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
++|||||.+++..++.. . ..+++++.+|||+|||.+++.++..+..+++|+||+..|++||.++|..+..-. ..+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~-~~~ 80 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEK-YNF 80 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTS-EEE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhh-hhh
Confidence 57999999999998752 1 235899999999999999999888877799999999999999999997764211 011
Q ss_pred EE-------------EcCCcc----ccccCCCcEEEEchHHhhcccCCChhHHH---HHHHHhcCCccEEEEcCCcccCc
Q 010991 100 CR-------------FTSDSK----ERFRGNAGVVVTTYNMVAFGGKRSEESEK---IIEEIRNREWGLLLMDEVHVVPA 159 (496)
Q Consensus 100 ~~-------------~~g~~~----~~~~~~~~IiItT~~~l~~~~~r~~~~~~---~~~~l~~~~~~~vIlDEaH~~~~ 159 (496)
.. ...... ........++++|++++............ .........+++||+||||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 00 000000 01134578999999999765321100000 00112235789999999999998
Q ss_pred hH-HHHHHHhccCccEEEEeecCCC
Q 010991 160 HM-FRKVISLTKSHCKLGLTATLVR 183 (496)
Q Consensus 160 ~~-~~~~l~~l~~~~~L~LTATp~r 183 (496)
.. |+.++. ..+.++|+|||||.|
T Consensus 161 ~~~~~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 161 DSSYREIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp HHHHHHHHH-SSCCEEEEEESS-S-
T ss_pred HHHHHHHHc-CCCCeEEEEEeCccC
Confidence 87 888887 778899999999976
No 90
>PRK09401 reverse gyrase; Reviewed
Probab=99.86 E-value=2.8e-20 Score=212.07 Aligned_cols=243 Identities=17% Similarity=0.232 Sum_probs=157.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.+.|+|+|..+++.++.+. +.++++|||+|||..++.++... +.++|||+||++|+.||.+.|+.++......+
T Consensus 78 G~~pt~iQ~~~i~~il~g~---dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~ 154 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGE---SFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGV 154 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCC---cEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceE
Confidence 5689999999999888764 99999999999997655544332 56899999999999999999999875444455
Q ss_pred EEEcCCc------cc----cc-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc---------
Q 010991 100 CRFTSDS------KE----RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--------- 159 (496)
Q Consensus 100 ~~~~g~~------~~----~~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--------- 159 (496)
....|+. +. .+ .+.++|+|+|++.|... .+.+....+++||+||||++..
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~----------~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKN----------FDELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHH----------HHhccccccCEEEEEChHHhhhcccchhhHH
Confidence 5444332 11 11 25689999999988643 3345446799999999999873
Q ss_pred --hHH-----HHHHHhcc-------------------------CccEEEEeecCCCCccchhhhhhhhCccccccCHHHH
Q 010991 160 --HMF-----RKVISLTK-------------------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDL 207 (496)
Q Consensus 160 --~~~-----~~~l~~l~-------------------------~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l 207 (496)
..| .+++..++ ..+.+++|||..........+..+++ ++....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~---~~v~~~-- 299 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG---FEVGSP-- 299 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce---EEecCc--
Confidence 122 33333333 24678899998532111100111111 110000
Q ss_pred HhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHH---HHHH
Q 010991 208 VKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA---LTEY 284 (496)
Q Consensus 208 ~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~---~~~l 284 (496)
...+.+..-..+.++ .|...+..++..+ +.++||||++... ++.+
T Consensus 300 --~~~~rnI~~~yi~~~--------------------------~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l 347 (1176)
T PRK09401 300 --VFYLRNIVDSYIVDE--------------------------DSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEEL 347 (1176)
T ss_pred --ccccCCceEEEEEcc--------------------------cHHHHHHHHHHhc----CCCEEEEEecccChHHHHHH
Confidence 011111111111111 2334455555433 4579999998666 9999
Q ss_pred HHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 285 AMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 285 ~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
++.|. +..+||++ .+.+++|++| ++++||+|
T Consensus 348 ~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVat 383 (1176)
T PRK09401 348 AEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGV 383 (1176)
T ss_pred HHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEe
Confidence 98884 56799999 2345999999 99999996
No 91
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=6.1e-21 Score=194.37 Aligned_cols=307 Identities=16% Similarity=0.194 Sum_probs=206.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-hc----------CCcEEEEEeChHHHHHHHHHHHHhh-
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI----------KKSCLCLATNAVSVDQWAFQFKLWS- 92 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~~----------~~~~LIl~P~~~L~~Qw~~e~~~~~- 92 (496)
.+.|.|..|++-++.+ ++++.++|||+|||+.....+. ++ +-.++|+.|+++|+.|.+.++.++.
T Consensus 158 ~Pt~iq~~aipvfl~~---r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEK---RDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCCcccchhhhhhhcc---cceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 5789999999977766 3899999999999999665543 22 1368999999999999999999986
Q ss_pred -CCCCCcEEEEcCCccc--c----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HHHH
Q 010991 93 -TIQDDQICRFTSDSKE--R----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRK 164 (496)
Q Consensus 93 -~~~~~~v~~~~g~~~~--~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~ 164 (496)
......+.-+...... + ....++|+|+||-.+.....-..- ...+ ..+.++|+||++.+..+ .|..
T Consensus 235 ~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~----~idl--~~V~~lV~dEaD~lfe~~~f~~ 308 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKL----NIDL--SKVEWLVVDEADLLFEPEFFVE 308 (593)
T ss_pred CCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCc----cchh--heeeeEeechHHhhhChhhHHH
Confidence 3333334433333110 0 123478999999888765442210 0112 56778999999999988 5554
Q ss_pred HHH----hccCc--cEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhc
Q 010991 165 VIS----LTKSH--CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (496)
Q Consensus 165 ~l~----~l~~~--~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~ 238 (496)
.+. .+.++ ++=.||||..-+.+ .|..++..+.+. +.+...+.. ..
T Consensus 309 Qla~I~sac~s~~i~~a~FSat~~~~VE----------------E~~~~i~~~~~~------vivg~~~sa-------~~ 359 (593)
T KOG0344|consen 309 QLADIYSACQSPDIRVALFSATISVYVE----------------EWAELIKSDLKR------VIVGLRNSA-------NE 359 (593)
T ss_pred HHHHHHHHhcCcchhhhhhhccccHHHH----------------HHHHHhhcccee------EEEecchhH-------hh
Confidence 443 33333 34456788653322 244444322221 111111111 11
Q ss_pred HHHHHHhhhhCC-CcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------CCeEEcCCCHHHHHHHHHHHhc
Q 010991 239 SKKKQALYVMNP-NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKC 311 (496)
Q Consensus 239 ~~~~~~l~~~~~-~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~il~~F~~ 311 (496)
...+.++++.+. +|+-+|..++...- ...++||.++.+.+..|...|. +.+|||..++.+|.+.+++|+.
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~g~---~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVASGF---KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhccC---CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc
Confidence 223344555544 58888999986543 4579999999999999999994 8899999999999999999999
Q ss_pred CCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 312 SRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 312 ~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
| ++.++++|. ..+.+.+-.+|++|+||+||+|+ .+....||. . .++.+.
T Consensus 437 g-~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~----------~g~Aitfyt---d--~d~~~i 500 (593)
T KOG0344|consen 437 G-KIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR----------SGKAITFYT---D--QDMPRI 500 (593)
T ss_pred c-CeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCC----------CcceEEEec---c--ccchhh
Confidence 9 999999999 34555677899999999999997 455555553 2 333333
Q ss_pred HHHHHHHHHcCc
Q 010991 377 TKRQQFLIDQGY 388 (496)
Q Consensus 377 ~~r~~~l~~~g~ 388 (496)
+--...+..+|.
T Consensus 501 r~iae~~~~sG~ 512 (593)
T KOG0344|consen 501 RSIAEVMEQSGC 512 (593)
T ss_pred hhHHHHHHHcCC
Confidence 333444555553
No 92
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.85 E-value=1.7e-19 Score=199.48 Aligned_cols=276 Identities=18% Similarity=0.163 Sum_probs=171.1
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCC-CCcEEEEcCCc
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DDQICRFTSDS 106 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~-~~~v~~~~g~~ 106 (496)
.+.+. .+.++ ++.++.+|||+|||.+...++... ..+++|++|+++++.|..+.+....+.. +..|+...++.
T Consensus 11 ~~i~~-~l~~~--~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 11 PELLT-ALKTA--PQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHH-HHHhC--CCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 34444 34443 389999999999999876555432 3589999999999999999987654432 23454433332
Q ss_pred cccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCccc-Cch----H-HHHHHHhccC-ccEEEEee
Q 010991 107 KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV-PAH----M-FRKVISLTKS-HCKLGLTA 179 (496)
Q Consensus 107 ~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~-~~~----~-~~~~l~~l~~-~~~L~LTA 179 (496)
.. ......|+|+|++.|....... ..-..+++||+||+|.. .+. . ...++..++. .+++++||
T Consensus 88 ~~-~~~~t~I~v~T~G~Llr~l~~d---------~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 88 SK-VGPNTRLEVVTEGILTRMIQRD---------PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred cc-cCCCCcEEEEChhHHHHHHhhC---------CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 21 2344679999999986543211 11268999999999973 332 1 2233343433 36799999
Q ss_pred cCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHH
Q 010991 180 TLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEF 258 (496)
Q Consensus 180 Tp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ 258 (496)
|+... .+..+++ +.+... .|-..++. ..+.++.... ++. ..+ ..++..
T Consensus 158 Tl~~~-----~l~~~~~~~~~I~~-------~gr~~pV~--~~y~~~~~~~---~~~------~~v--------~~~l~~ 206 (812)
T PRK11664 158 TLDND-----RLQQLLPDAPVIVS-------EGRSFPVE--RRYQPLPAHQ---RFD------EAV--------ARATAE 206 (812)
T ss_pred CCCHH-----HHHHhcCCCCEEEe-------cCccccce--EEeccCchhh---hHH------HHH--------HHHHHH
Confidence 98531 2333343 221111 12111221 2222222111 110 000 012233
Q ss_pred HHHHhhhcCCCeEEEEeccHHHHHHHHHHcC--------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--------
Q 010991 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------- 322 (496)
Q Consensus 259 ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------- 322 (496)
++. ..+..+|||+++...++.+++.|. +..+||++++++|..+++.|.+| ..++||+|+
T Consensus 207 ~l~----~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rkVlvATnIAErsLtI 281 (812)
T PRK11664 207 LLR----QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRKVVLATNIAETSLTI 281 (812)
T ss_pred HHH----hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeEEEEecchHHhcccc
Confidence 332 235689999999999999998884 34489999999999999999998 889999998
Q ss_pred -----ccC-C-------------------CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCC
Q 010991 323 -----ISS-H-------------------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 323 -----i~~-~-------------------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
+++ . .-|..++.||.||+||.++ +..|.|.++.
T Consensus 282 p~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~--------------G~cyrL~t~~ 339 (812)
T PRK11664 282 EGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP--------------GICLHLYSKE 339 (812)
T ss_pred cCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC--------------cEEEEecCHH
Confidence 011 0 1245679999999999873 4567776643
No 93
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.85 E-value=4e-20 Score=199.18 Aligned_cols=132 Identities=20% Similarity=0.140 Sum_probs=90.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...+||||.+++..+..+. +.|+.++||+|||+++..++.. .++.++||+|+..|+.||.+.+..+...-+..+
T Consensus 66 ~lglrpydVQlig~l~l~~---G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv 142 (762)
T TIGR03714 66 VLGMFPYDVQVLGAIVLHQ---GNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTV 142 (762)
T ss_pred hcCCCccHHHHHHHHHhcC---CceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcE
Confidence 3467999999999877654 4699999999999997766532 356899999999999999998877654445566
Q ss_pred EEEcCC-ccc-------cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSD-SKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~-~~~-------~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+...++ ... .....++|+++|++.|..+.-|..-... ...+..+.+.++|+||||.+.
T Consensus 143 ~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~-~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 143 SLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASN-KEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred EEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcc-hhhcccccCcEEEEecHhhHh
Confidence 654443 111 1124689999999999543211100000 011112578899999999984
No 94
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=8.4e-21 Score=185.71 Aligned_cols=299 Identities=19% Similarity=0.190 Sum_probs=213.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHH-HHHHhcC------CcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-SAACRIK------KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i-~~~~~~~------~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
.+.|.|++.++.++... +.+-.+-||+|||.+.+ .+++.++ -++||++||++|+.|..+-++.+......
T Consensus 43 ~ptpiqRKTipliLe~~---dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~l 119 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILEGR---DVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKL 119 (529)
T ss_pred CCCchhcccccceeecc---ccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccch
Confidence 68999999999888774 77777899999999954 4455442 38999999999999988888877654444
Q ss_pred cEE-EEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHH----HHh
Q 010991 98 QIC-RFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV----ISL 168 (496)
Q Consensus 98 ~v~-~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~----l~~ 168 (496)
+.. .++|+..+. +..+++|+++|++.+....- + +. +.-..+.+||+||++++....|+.- +.+
T Consensus 120 r~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v------e-m~-l~l~sveyVVfdEadrlfemgfqeql~e~l~r 191 (529)
T KOG0337|consen 120 RQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV------E-MT-LTLSSVEYVVFDEADRLFEMGFQEQLHEILSR 191 (529)
T ss_pred hhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh------h-ee-ccccceeeeeehhhhHHHhhhhHHHHHHHHHh
Confidence 544 455554432 45678999999998865521 1 11 3336788999999999998766544 444
Q ss_pred cc-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEc--CCCHHHHHHHHhhhcHHHHHHh
Q 010991 169 TK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC--PMTKEFFSEYLKKENSKKKQAL 245 (496)
Q Consensus 169 l~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~--~~~~~~~~~yl~~~~~~~~~~l 245 (496)
++ .+..+.+|||.++. +.+..++|...|..+. +.+ ..++.... ...
T Consensus 192 l~~~~QTllfSatlp~~-------------------lv~fakaGl~~p~lVR-ldvetkise~lk~-----------~f~ 240 (529)
T KOG0337|consen 192 LPESRQTLLFSATLPRD-------------------LVDFAKAGLVPPVLVR-LDVETKISELLKV-----------RFF 240 (529)
T ss_pred CCCcceEEEEeccCchh-------------------hHHHHHccCCCCceEE-eehhhhcchhhhh-----------hee
Confidence 44 34889999998642 2345556666665433 221 12211111 112
Q ss_pred hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 246 ~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
.+.+.+|..+|..++..+- ..++++||+.+..+++.+...|. ...++|++.+..|..-+.+|..+ +.+++++
T Consensus 241 ~~~~a~K~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~~~lvv 317 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRI--KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KTSILVV 317 (529)
T ss_pred eeccHHHHHHHHHHHhccc--cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-ccceEEE
Confidence 3334457777778776542 35689999999999999999884 67799999999999999999998 9999999
Q ss_pred ee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHH
Q 010991 321 SK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 383 (496)
Q Consensus 321 s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l 383 (496)
|+ -++.+..+..|++|+||+.|+|+ ...+|++|.. .|..|+.-.+.+|
T Consensus 318 TdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr-------------tg~aYs~V~~--~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR-------------TGRAYSLVAS--TDDPYLLDLQLFL 380 (529)
T ss_pred ehhhhccCCCccccccccccCCCCCceEEEEecchhhccc-------------cceEEEEEec--ccchhhhhhhhhc
Confidence 99 12344567789999999999995 5789999974 3445554455555
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=1.4e-19 Score=191.87 Aligned_cols=303 Identities=17% Similarity=0.123 Sum_probs=201.5
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH---HHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA---ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~---~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
+...+.|-++|++|+..+..+. +++++++|.+|||++|-.+ +.....++++-+|-++|-+|-.+.|+.-++
T Consensus 292 ~~~pFelD~FQk~Ai~~lerg~---SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~--- 365 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLERGD---SVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG--- 365 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHcCC---eEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc---
Confidence 4567899999999999766554 9999999999999996444 444567999999999999999999987543
Q ss_pred CcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhccCc
Q 010991 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSH 172 (496)
Q Consensus 97 ~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~~~ 172 (496)
.+++++|+.. ++..+.++|.|-+.|+++.-|..+ .+ ++...||+||+|.+.+. .|..++-+++.|
T Consensus 366 -DvgLlTGDvq--inPeAsCLIMTTEILRsMLYrgad------li--RDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 366 -DVGLLTGDVQ--INPEASCLIMTTEILRSMLYRGAD------LI--RDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred -ccceeeccee--eCCCcceEeehHHHHHHHHhcccc------hh--hccceEEEeeeeecccccccccceeeeeecccc
Confidence 4678999977 466788999999999988776543 33 67888999999999864 799999999888
Q ss_pred -cEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcC--C------CHHHHH-----HHHhhh-
Q 010991 173 -CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP--M------TKEFFS-----EYLKKE- 237 (496)
Q Consensus 173 -~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~--~------~~~~~~-----~yl~~~- 237 (496)
..|+||||.+..++...++...-+..+|-.+.. .--.|. ...+|+. + ++.+.. .+....
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~-----kRPVPL-Eh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~ 508 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYVISTS-----KRPVPL-EHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKK 508 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEEEecC-----CCccce-EEEEEeccceehhhcccchhhhhcchhhhhhhcc
Confidence 678999999876655433322222222211110 000000 1112211 0 000100 000000
Q ss_pred ----------cHHH-HH-----------Hh----hhhCCCcH--HHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC
Q 010991 238 ----------NSKK-KQ-----------AL----YVMNPNKF--RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289 (496)
Q Consensus 238 ----------~~~~-~~-----------~l----~~~~~~K~--~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~ 289 (496)
..+. +. .. ...+.++. ...-.++.++....--.+||||=++..|+.+++.|.
T Consensus 509 ~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~ 588 (1248)
T KOG0947|consen 509 EAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLT 588 (1248)
T ss_pred cccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHh
Confidence 0000 00 00 00111122 134455555442445689999999999999999882
Q ss_pred --------------------------------------------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---
Q 010991 290 --------------------------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK--- 322 (496)
Q Consensus 290 --------------------------------------------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--- 322 (496)
+++.||+.=+--.+-+.-.|+.| -++|+|+|.
T Consensus 589 ~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG-lVKVLFATETFA 667 (1248)
T KOG0947|consen 589 NLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG-LVKVLFATETFA 667 (1248)
T ss_pred ccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC-ceEEEeehhhhh
Confidence 46678988777777777889998 999999998
Q ss_pred --------------ccCCCC------ChhHHHHHccCcCcCCCC
Q 010991 323 --------------ISSHAG------SRRQEAQRLGRILRAKGK 346 (496)
Q Consensus 323 --------------i~~~~~------s~~~~~Qr~GR~~R~g~~ 346 (496)
+.-+.| +|..|.|+.||+||.|-.
T Consensus 668 MGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD 711 (1248)
T KOG0947|consen 668 MGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLD 711 (1248)
T ss_pred hhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccC
Confidence 112222 677899999999999953
No 96
>PRK09694 helicase Cas3; Provisional
Probab=99.83 E-value=4.9e-19 Score=195.69 Aligned_cols=299 Identities=16% Similarity=0.151 Sum_probs=173.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhC--CC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST--IQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~--~~ 95 (496)
.+.+||+|..+....... +..||.+|||+|||.+++.++..+ ..++++..|+.++++|.++++.+|.. ++
T Consensus 284 ~~~p~p~Q~~~~~~~~~p---gl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQP---GLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCCChHHHHHHHhhccCC---CeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 568999999885532222 478999999999999998887643 25899999999999999999887542 22
Q ss_pred CCcEEEEcCCccc--------------------------ccc------CCCcEEEEchHHhhcccCCChhHHHHHHHHhc
Q 010991 96 DDQICRFTSDSKE--------------------------RFR------GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN 143 (496)
Q Consensus 96 ~~~v~~~~g~~~~--------------------------~~~------~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~ 143 (496)
...+.+.+|.... .+. --++|+|+|.+.+....-.... .....+ .
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~lR~~-~ 437 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RFIRGF-G 437 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HHHHHH-h
Confidence 3356666654320 000 1168999999877643211100 111111 1
Q ss_pred CCccEEEEcCCcccCchH---HHHHHHhccC--ccEEEEeecCCCCccchhhhhhhhCcc---cc--ccCHHHHHhCCCC
Q 010991 144 REWGLLLMDEVHVVPAHM---FRKVISLTKS--HCKLGLTATLVREDERITDLNFLIGPK---LY--EANWLDLVKGGFI 213 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~---~~~~l~~l~~--~~~L~LTATp~r~d~~~~~l~~l~gp~---~~--~~~~~~l~~~g~l 213 (496)
..-.+|||||+|.+...+ ...++..+.. ...|+||||++..- ...|...++.. .. .+++.... +..
T Consensus 438 La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~--r~~L~~a~~~~~~~~~~~~YPlvt~~--~~~ 513 (878)
T PRK09694 438 LGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATL--KQKLLDTYGGHDPVELSSAYPLITWR--GVN 513 (878)
T ss_pred hccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHH--HHHHHHHhcccccccccccccccccc--ccc
Confidence 223489999999997643 3344444332 36899999986321 11222111110 00 00000000 000
Q ss_pred CcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhh-----h-CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHH
Q 010991 214 ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV-----M-NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK 287 (496)
Q Consensus 214 ~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~-----~-~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~ 287 (496)
......+...++. + ..+..+.+ . ......+++.+++.. ..|.++||||+++..++.+++.
T Consensus 514 ---~~~~~~~~~~~~~----~-----~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~ 579 (878)
T PRK09694 514 ---GAQRFDLSAHPEQ----L-----PARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQR 579 (878)
T ss_pred ---cceeeeccccccc----c-----CcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHH
Confidence 0000000000000 0 00000000 0 001123455565544 3578999999999999999988
Q ss_pred cC--------CCeEEcCCCHHHH----HHHHHHH-hcCC--CccEEEEee------------ccCCCCChhHHHHHccCc
Q 010991 288 LR--------KPMIYGATSHVER----TKILQAF-KCSR--DLNTIFLSK------------ISSHAGSRRQEAQRLGRI 340 (496)
Q Consensus 288 L~--------~~~i~G~~~~~eR----~~il~~F-~~~~--~~~vlv~s~------------i~~~~~s~~~~~Qr~GR~ 340 (496)
|. +..+||.++..+| .++++.| +++. ...+||+|. ++........++||+||+
T Consensus 580 L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~DvlItdlaPidsLiQRaGR~ 659 (878)
T PRK09694 580 LKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDFDWLITQLCPVDLLFQRLGRL 659 (878)
T ss_pred HHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCCCeEEECCCCHHHHHHHHhcc
Confidence 84 4579999999999 4678889 5542 146777776 223334567899999999
Q ss_pred CcCCC
Q 010991 341 LRAKG 345 (496)
Q Consensus 341 ~R~g~ 345 (496)
+|.+.
T Consensus 660 ~R~~~ 664 (878)
T PRK09694 660 HRHHR 664 (878)
T ss_pred CCCCC
Confidence 99986
No 97
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.83 E-value=8.3e-19 Score=191.94 Aligned_cols=143 Identities=18% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
....|+++|.+++..+..+......++.++||+|||.+++.++.. .++.+|||+|+.+|+.|+.+.|+++++ ..
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg---~~ 217 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFG---AP 217 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhC---CC
Confidence 456799999999999887411247899999999999998766543 367899999999999999999998764 36
Q ss_pred EEEEcCCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-----HH--
Q 010991 99 ICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF-- 162 (496)
Q Consensus 99 v~~~~g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~-- 162 (496)
+.+++|+.... ..+..+|+|+|++.+... -.++++||+||+|...-. .|
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p---------------~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLP---------------FKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhccc---------------ccCCCEEEEECCCccccccCcCCCCcH
Confidence 78888774321 235678999999765311 267899999999987521 12
Q ss_pred HHHH---HhccCccEEEEeecCC
Q 010991 163 RKVI---SLTKSHCKLGLTATLV 182 (496)
Q Consensus 163 ~~~l---~~l~~~~~L~LTATp~ 182 (496)
+.+. ........|++||||.
T Consensus 283 r~va~~ra~~~~~~~il~SATps 305 (679)
T PRK05580 283 RDLAVVRAKLENIPVVLGSATPS 305 (679)
T ss_pred HHHHHHHhhccCCCEEEEcCCCC
Confidence 2222 2233457888999996
No 98
>COG4889 Predicted helicase [General function prediction only]
Probab=99.83 E-value=4e-20 Score=193.86 Aligned_cols=317 Identities=20% Similarity=0.277 Sum_probs=196.3
Q ss_pred ccccCCCCCCcHHHHHHHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHhc-CCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 17 NMELKPHAQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 17 ~~~l~~~~~lr~yQ~~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~~-~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
.+.++...+|||||+.|+.+.+++- ...+|=+.++||+|||.+++-+...+ ..++|++||+.+|+.| .|+.|..-
T Consensus 153 nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQ---Tlrew~~~ 229 (1518)
T COG4889 153 NLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQ---TLREWTAQ 229 (1518)
T ss_pred ccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHH---HHHHHhhc
Confidence 4566778899999999999988752 23478899999999999999988776 4699999999999988 45555421
Q ss_pred CC--CcEEEEcCCccc----------------------c--------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHh
Q 010991 95 QD--DQICRFTSDSKE----------------------R--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142 (496)
Q Consensus 95 ~~--~~v~~~~g~~~~----------------------~--------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~ 142 (496)
.. .....+.++.+- . -..+--|+++||+++.... + ....-
T Consensus 230 ~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~----e----AQe~G 301 (1518)
T COG4889 230 KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIK----E----AQEAG 301 (1518)
T ss_pred cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHH----H----HHHcC
Confidence 11 111222222110 0 1234568999999886431 1 12222
Q ss_pred cCCccEEEEcCCcccCch--------HHHHHH--HhccCccEEEEeecCCCCccch--------h-----hhhhhhCccc
Q 010991 143 NREWGLLLMDEVHVVPAH--------MFRKVI--SLTKSHCKLGLTATLVREDERI--------T-----DLNFLIGPKL 199 (496)
Q Consensus 143 ~~~~~~vIlDEaH~~~~~--------~~~~~l--~~l~~~~~L~LTATp~r~d~~~--------~-----~l~~l~gp~~ 199 (496)
-..|++||+||||+.-.. .|.++- ..+++..||.+||||.-..+.. . +=...+||..
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef 381 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEF 381 (1518)
T ss_pred CCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhh
Confidence 378999999999997642 344333 2356678899999998433321 1 1135789999
Q ss_pred cccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH-HHHHHhhhhCCCcHHHH-HHHHHHh-----------hhc
Q 010991 200 YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-KKKQALYVMNPNKFRAC-EFLIRFH-----------EQQ 266 (496)
Q Consensus 200 ~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~-~~~~~l~~~~~~K~~~l-~~ll~~~-----------~~~ 266 (496)
++....+++..+.|.++.+..+.+.- +....-+..... ....+ ....-.|+--| .-|.+.. ...
T Consensus 382 ~rl~FgeAv~rdlLTDYKVmvlaVd~--~~i~~~~~~~~~~~~~~L-~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 382 HRLGFGEAVERDLLTDYKVMVLAVDK--EVIAGVLQSVLSGPSKGL-ALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hcccHHHHHHhhhhccceEEEEEech--hhhhhhhhhhccCccccc-chhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 99999999999999999877665441 111111100000 00000 00000000000 0111100 002
Q ss_pred CCCeEEEEeccHHHHHHHHHHcC--------------------CCeEEcCCCHHHHHHHHHH---HhcCCCccEE----E
Q 010991 267 RGDKIIVFADNLFALTEYAMKLR--------------------KPMIYGATSHVERTKILQA---FKCSRDLNTI----F 319 (496)
Q Consensus 267 ~g~kiIVF~~~~~~~~~l~~~L~--------------------~~~i~G~~~~~eR~~il~~---F~~~~~~~vl----v 319 (496)
+-++.|-||.++...+.+++.+. +..++|.|...+|...+.. |..+ +++++ +
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n-eckIlSNaRc 537 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN-ECKILSNARC 537 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc-hheeeccchh
Confidence 33677889988888777766552 4558999999999666543 2332 33332 2
Q ss_pred Eee-----------ccCCCCChhHHHHHccCcCcCCCCcc
Q 010991 320 LSK-----------ISSHAGSRRQEAQRLGRILRAKGKLE 348 (496)
Q Consensus 320 ~s~-----------i~~~~~s~~~~~Qr~GR~~R~g~~~~ 348 (496)
+|. ++++-.|..+.+|.+||++|..++|+
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred hhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 222 45566778889999999999998766
No 99
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=9.1e-20 Score=195.74 Aligned_cols=317 Identities=17% Similarity=0.186 Sum_probs=205.9
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhc------------CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccc-
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKE- 108 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~------------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~- 108 (496)
..+.||+++.+|.|||+.+++++... .+..|||||.. ++.||..++.+-.......|.+++|..++
T Consensus 151 ~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s-~~~qW~~elek~~~~~~l~v~v~~gr~kd~ 229 (674)
T KOG1001|consen 151 SLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTS-LLTQWKTELEKVTEEDKLSIYVYHGRTKDK 229 (674)
T ss_pred ccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchH-HHHHHHHHHhccCCccceEEEEeccccccc
Confidence 34689999999999999999988653 23589999987 57999999965544444566777771221
Q ss_pred cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH--HHHHHhccCccEEEEeecCCCCcc
Q 010991 109 RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF--RKVISLTKSHCKLGLTATLVREDE 186 (496)
Q Consensus 109 ~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~--~~~l~~l~~~~~L~LTATp~r~d~ 186 (496)
......+|++|||+++.+. .+....|-.+|+||||.+++..- .+..-.+.+.++..|||||..+.-
T Consensus 230 ~el~~~dVVltTy~il~~~------------~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~ 297 (674)
T KOG1001|consen 230 SELNSYDVVLTTYDILKNS------------PLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNL 297 (674)
T ss_pred chhcCCceEEeeHHHhhcc------------cccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhH
Confidence 1234577999999999853 12236888999999999998733 234556788899999999995422
Q ss_pred chh------------------------------------hhhhhhCccccccCHHHHHhCC----CCCcceEEEEEcCCC
Q 010991 187 RIT------------------------------------DLNFLIGPKLYEANWLDLVKGG----FIANVQCAEVWCPMT 226 (496)
Q Consensus 187 ~~~------------------------------------~l~~l~gp~~~~~~~~~l~~~g----~l~~~~~~~v~~~~~ 226 (496)
... .+..++.+...+.+....+. | .+++..+..+++...
T Consensus 298 ~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~-gk~i~~lppk~v~~~~~~~~ 376 (674)
T KOG1001|consen 298 DELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVD-GKPILELPPKTVFVTEVDLS 376 (674)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhccccccccc-CccccccCcceeEeeecccc
Confidence 100 00011111111111100000 1 334555555566554
Q ss_pred HHHHHHHHhhhc------------------------------------------------------HHHH--HHh---h-
Q 010991 227 KEFFSEYLKKEN------------------------------------------------------SKKK--QAL---Y- 246 (496)
Q Consensus 227 ~~~~~~yl~~~~------------------------------------------------------~~~~--~~l---~- 246 (496)
.+....|-.... ...+ ..+ .
T Consensus 377 ~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 456 (674)
T KOG1001|consen 377 KSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHW 456 (674)
T ss_pred HhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccc
Confidence 432111110000 0000 000 0
Q ss_pred ---------------------------------------------------------hh----CCCcHHHHHHHHHHhhh
Q 010991 247 ---------------------------------------------------------VM----NPNKFRACEFLIRFHEQ 265 (496)
Q Consensus 247 ---------------------------------------------------------~~----~~~K~~~l~~ll~~~~~ 265 (496)
.. .+.|+..+..++...+
T Consensus 457 c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~- 535 (674)
T KOG1001|consen 457 CHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQAKE- 535 (674)
T ss_pred cccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHhhcc-
Confidence 00 0112222222222111
Q ss_pred cCC-CeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----------------c
Q 010991 266 QRG-DKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------------I 323 (496)
Q Consensus 266 ~~g-~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------------i 323 (496)
... .+++||++++..+..+...|. ...+.|.++...|.+.+..|..++.+.++++|. +
T Consensus 536 ~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~ 615 (674)
T KOG1001|consen 536 MSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLL 615 (674)
T ss_pred CCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHh
Confidence 112 399999999999999988874 455789999999999999999888888888777 6
Q ss_pred cCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHH--HHHHHHH
Q 010991 324 SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYST--KRQQFLI 384 (496)
Q Consensus 324 ~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~--~r~~~l~ 384 (496)
.+.+|||..+.|++.|+||.| |.+.|.|++++.++|+|+++.. +++.++.
T Consensus 616 ~d~~wnp~~eeQaidR~hrig-----------q~k~v~v~r~~i~dtveer~l~iq~~K~~~~ 667 (674)
T KOG1001|consen 616 MDPWWNPAVEEQAIDRAHRIG-----------QTKPVKVSRFIIKDTVEERILKIQEKKREYN 667 (674)
T ss_pred hchhcChHHHHHHHHHHHHhc-----------ccceeeeeeehhhhccHHHHHHHHHHHHHHH
Confidence 788899999999999999999 6678999999999999998873 4455554
No 100
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.82 E-value=2.2e-19 Score=198.03 Aligned_cols=289 Identities=17% Similarity=0.136 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEc
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (496)
-..||-|.++|..++.+. +.++.+|||.||+++...++.-..+-+|||.|..+|+......+... +++ .+.++
T Consensus 263 ~~FR~~Q~eaI~~~l~Gk---d~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~-~I~---a~~L~ 335 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLSGK---DCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK-GIP---ACFLS 335 (941)
T ss_pred ccCChhHHHHHHHHHcCC---ceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc-Ccc---eeecc
Confidence 368999999999878775 99999999999999998888888889999999999988877777442 343 34455
Q ss_pred CCcccc--------c-cC--CCcEEEEchHHhhcccCCChhHHHHHHHHhc-CCccEEEEcCCcccCc------hHHHHH
Q 010991 104 SDSKER--------F-RG--NAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA------HMFRKV 165 (496)
Q Consensus 104 g~~~~~--------~-~~--~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~------~~~~~~ 165 (496)
++.... + .+ ...|+..||+++..... .......+.. .-..++|+||||.+.. +.|+++
T Consensus 336 s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~----l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 336 SIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEG----LLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred ccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccc----hhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 554321 1 23 57799999999986632 2222233311 2267899999999983 345433
Q ss_pred H---HhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHH
Q 010991 166 I---SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (496)
Q Consensus 166 l---~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~ 242 (496)
- ..+.....|+||||...... .++...++ .....+...++..+-...+|....+....
T Consensus 412 ~~l~~~~~~vP~iALTATAT~~v~--~DIi~~L~-----l~~~~~~~~sfnR~NL~yeV~~k~~~~~~------------ 472 (941)
T KOG0351|consen 412 GLLRIRFPGVPFIALTATATERVR--EDVIRSLG-----LRNPELFKSSFNRPNLKYEVSPKTDKDAL------------ 472 (941)
T ss_pred HHHHhhCCCCCeEEeehhccHHHH--HHHHHHhC-----CCCcceecccCCCCCceEEEEeccCccch------------
Confidence 2 34455689999999742211 12211111 00111344666666656666555431100
Q ss_pred HHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccE
Q 010991 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (496)
Q Consensus 243 ~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~v 317 (496)
+..+..+-.++ .+..+||||.++..++.++..|+ +.++|++++..+|..+...|..+ +++|
T Consensus 473 ----------~~~~~~~~~~~---~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~V 538 (941)
T KOG0351|consen 473 ----------LDILEESKLRH---PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRV 538 (941)
T ss_pred ----------HHHHHHhhhcC---CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeE
Confidence 02223333333 47899999999999999999985 67899999999999999999998 9999
Q ss_pred EEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEE
Q 010991 318 IFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 366 (496)
Q Consensus 318 lv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lv 366 (496)
+++|- ..+.+.|...|+|-.||+||.|. ....+.+|.+-
T Consensus 539 ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~----------~s~C~l~y~~~ 592 (941)
T KOG0351|consen 539 IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGL----------PSSCVLLYGYA 592 (941)
T ss_pred EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCC----------cceeEEecchh
Confidence 99998 35666788999999999999996 45567777654
No 101
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=5.8e-19 Score=191.96 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=87.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...++|.|..+...+. .| -|..+.||+|||+++..++. ..+..++||+|+..|+.|-.+.+..+...-+..+
T Consensus 76 g~~p~~vQl~~~~~l~-~G----~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v 150 (790)
T PRK09200 76 GMRPYDVQLIGALVLH-EG----NIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTV 150 (790)
T ss_pred CCCCchHHHHhHHHHc-CC----ceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 3455666666655333 22 38899999999999766654 2477999999999999998888877766666788
Q ss_pred EEEcCCcc-cc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSDSK-ER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~-~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+++.|+.. .. ..-.++|+++|++.+..+.-|..-.... .....+.+.++|+||||.+.
T Consensus 151 ~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~-~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 151 GLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSK-EDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred EEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccch-hhhcccccceEEEeccccce
Confidence 88877754 11 2245899999987764321111000000 11123678899999999986
No 102
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.81 E-value=2.2e-19 Score=192.37 Aligned_cols=311 Identities=18% Similarity=0.176 Sum_probs=177.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
..+++.|..+...+. . +.|..++||+|||+++..++. ..+..++||+||..|+.|-.+.+..+...-+..++
T Consensus 55 ~~p~~vQlig~~~l~-~----G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~ 129 (745)
T TIGR00963 55 MRPFDVQLIGGIALH-K----GKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVG 129 (745)
T ss_pred CCccchHHhhhhhhc-C----CceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEE
Confidence 344555555555322 2 238889999999999765552 23668999999999999988888887766567788
Q ss_pred EEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH-Hhcc--CccE
Q 010991 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI-SLTK--SHCK 174 (496)
Q Consensus 101 ~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l-~~l~--~~~~ 174 (496)
++.|+.... ..-.++|+++|+..|..+.-|.... -..+.+..+.++++|+||+|++.-..-+.-+ ..-+ ....
T Consensus 130 ~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~-~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ 208 (745)
T TIGR00963 130 LILSGMSPEERREAYACDITYGTNNELGFDYLRDNMA-HSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE 208 (745)
T ss_pred EEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccc-cchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchH
Confidence 887764321 1234789999999774332222100 0012233478999999999998743222211 1111 1122
Q ss_pred EEEeecCCCC----c----------------cchhhhhhhhC-cccccc---CHHHHHhCC------CCCcceEE-----
Q 010991 175 LGLTATLVRE----D----------------ERITDLNFLIG-PKLYEA---NWLDLVKGG------FIANVQCA----- 219 (496)
Q Consensus 175 L~LTATp~r~----d----------------~~~~~l~~l~g-p~~~~~---~~~~l~~~g------~l~~~~~~----- 219 (496)
+.++|||+-. + .-...+..+++ +.+|.. .|...+.+. +..+..+.
T Consensus 209 ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~ 288 (745)
T TIGR00963 209 LYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGE 288 (745)
T ss_pred HHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 3445554410 0 00111112221 122321 121111110 00111111
Q ss_pred -EEEcCCC-------------------------------------HHHHHHHHhhh------cH--HHHH----------
Q 010991 220 -EVWCPMT-------------------------------------KEFFSEYLKKE------NS--KKKQ---------- 243 (496)
Q Consensus 220 -~v~~~~~-------------------------------------~~~~~~yl~~~------~~--~~~~---------- 243 (496)
.+....| ..+++.|-+-. .. ..-.
T Consensus 289 V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~I 368 (745)
T TIGR00963 289 VVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVV 368 (745)
T ss_pred EEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEe
Confidence 0110111 11122221000 00 0000
Q ss_pred -------------HhhhhCCCcHHHH-HHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHH
Q 010991 244 -------------ALYVMNPNKFRAC-EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTK 304 (496)
Q Consensus 244 -------------~l~~~~~~K~~~l-~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~ 304 (496)
.++.....|+.++ +.+...| ..|..+||||.++..++.+++.|. ...+||. +.+|+.
T Consensus 369 Ptnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa 444 (745)
T TIGR00963 369 PTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREA 444 (745)
T ss_pred CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHH
Confidence 0011122466555 4444555 478999999999999999999994 4568988 779999
Q ss_pred HHHHHhcCCCccEEEEee-------c---------------cCCCCChhHHHHHccCcCcCCC
Q 010991 305 ILQAFKCSRDLNTIFLSK-------I---------------SSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 305 il~~F~~~~~~~vlv~s~-------i---------------~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.+..|..+ ...|+|+|. | ...+.|++.+.|+.||+||.|.
T Consensus 445 ~ii~~ag~-~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 445 EIIAQAGR-KGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred HHHHhcCC-CceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 99999987 789999998 1 1344699999999999999995
No 103
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.8e-18 Score=184.37 Aligned_cols=131 Identities=13% Similarity=0.039 Sum_probs=94.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...++|.|..++..++.+. |..+.||+|||+++..++.. .+..++||+||..|+.|-.+.+..++..-+..+
T Consensus 101 g~~p~~VQ~~~~~~ll~G~-----Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv 175 (656)
T PRK12898 101 GQRHFDVQLMGGLALLSGR-----LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTV 175 (656)
T ss_pred CCCCChHHHHHHHHHhCCC-----eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEE
Confidence 5678899999999777542 88999999999997666543 256899999999999998888888765556678
Q ss_pred EEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHH--------H----------HHHHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESE--------K----------IIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~--------~----------~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+.+.|+.... ..-.++|+++|...+..+.-|..-.. . ..+..-.+.+.++|+|||+.+.
T Consensus 176 ~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 176 GCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 8877764321 23468999999877766544432110 0 0111223678899999999875
No 104
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6e-19 Score=171.73 Aligned_cols=286 Identities=17% Similarity=0.166 Sum_probs=197.4
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-C-----CcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-~-----~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
+|-..|+.|+..+..+. +.++.+++|+|||.+....+... . .-+|+++|+++|+.|....+..+.......
T Consensus 48 kPSaIQqraI~p~i~G~---dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGH---DVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred CchHHHhccccccccCC---ceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 57778999999888775 89999999999999965555443 2 258999999999999998888876555556
Q ss_pred EEEEcCCccc------cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH----Hh
Q 010991 99 ICRFTSDSKE------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI----SL 168 (496)
Q Consensus 99 v~~~~g~~~~------~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l----~~ 168 (496)
+....|+..- ......+|++.|++.+....++. .+......+.|+||++.+.+..|+..+ +.
T Consensus 125 v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--------~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~ 196 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--------SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQE 196 (397)
T ss_pred eeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--------cccccceeEEeecchHhhhccchHHHHHHHHHH
Confidence 6655444221 11234789999998876654432 333466889999999999987665444 44
Q ss_pred ccC-ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEc-CCCHHHHHHHHhhhcHHHHHHhh
Q 010991 169 TKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC-PMTKEFFSEYLKKENSKKKQALY 246 (496)
Q Consensus 169 l~~-~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~-~~~~~~~~~yl~~~~~~~~~~l~ 246 (496)
++. .+.+++|||-+.... -+.+.+...+....+.. .++.+ +. +...+.
T Consensus 197 lp~~vQv~l~SAT~p~~vl--------------------~vt~~f~~~pv~i~vkk~~ltl~----gi------kq~~i~ 246 (397)
T KOG0327|consen 197 LPSDVQVVLLSATMPSDVL--------------------EVTKKFMREPVRILVKKDELTLE----GI------KQFYIN 246 (397)
T ss_pred cCcchhheeecccCcHHHH--------------------HHHHHhccCceEEEecchhhhhh----he------eeeeee
Confidence 443 378999999752111 11122222222111111 11111 11 111111
Q ss_pred hhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 247 ~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
+..+.|+..+..+.+ +-.+.+|||++.+.++.+...|. ...+||.+.+.+|..++..|+.| ..++||.|
T Consensus 247 v~k~~k~~~l~dl~~-----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlItt 320 (397)
T KOG0327|consen 247 VEKEEKLDTLCDLYR-----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLITT 320 (397)
T ss_pred ccccccccHHHHHHH-----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEeec
Confidence 222336666666665 24578999999999999999995 56799999999999999999998 89999988
Q ss_pred e---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCC
Q 010991 322 K---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 370 (496)
Q Consensus 322 ~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t 370 (496)
. -+..+.++..|.+|+||+||-|. .....++++.++
T Consensus 321 dl~argidv~~~slvinydlP~~~~~yihR~gr~gr~gr-------------kg~~in~v~~~d 371 (397)
T KOG0327|consen 321 DLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGR-------------KGVAINFVTEED 371 (397)
T ss_pred cccccccchhhcceeeeeccccchhhhhhhcccccccCC-------------CceeeeeehHhh
Confidence 8 23556788899999999999996 466777777544
No 105
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=4.4e-18 Score=180.01 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=87.4
Q ss_pred EEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc---------ccCCC
Q 010991 47 IIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNA 114 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~---------~~~~~ 114 (496)
+|.+|||+|||.+++.++.. .++.+|||+|+.+|+.|+.+.|++.++ ..+.+++|+.... ..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~---~~v~vlhs~~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFG---SQVAVLHSGLSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhC---CcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46899999999998776643 367899999999999999999998764 3577887764321 23567
Q ss_pred cEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-----hHH-----HHHHHhccCccEEEEeecCC
Q 010991 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-----HMF-----RKVISLTKSHCKLGLTATLV 182 (496)
Q Consensus 115 ~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-----~~~-----~~~l~~l~~~~~L~LTATp~ 182 (496)
+|+|+|++.+.. . -.++++||+||+|...- +.| ...........+|++||||.
T Consensus 78 ~IVVGTrsalf~-------------p--~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 78 LVVIGTRSALFL-------------P--FKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred CEEECChHHHcC-------------c--ccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 899999986631 1 26789999999998762 222 12233344567899999997
No 106
>PRK14701 reverse gyrase; Provisional
Probab=99.79 E-value=2.8e-18 Score=199.87 Aligned_cols=244 Identities=17% Similarity=0.178 Sum_probs=153.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCC--CC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ--DD 97 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~--~~ 97 (496)
.++++|+|..+++.++.+. +.++++|||+|||+.++.++... +..+|||+||++|+.|+.+.|..++... ..
T Consensus 77 G~~pt~iQ~~~i~~il~G~---d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v 153 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILRGK---SFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDV 153 (1638)
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCce
Confidence 4579999999999988875 89999999999999654443322 4589999999999999999999876422 23
Q ss_pred cEEEEcCCcccc--------c-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc---------
Q 010991 98 QICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--------- 159 (496)
Q Consensus 98 ~v~~~~g~~~~~--------~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--------- 159 (496)
.+..++|+.... + .+..+|+|+|++.|... ...+....++++|+||||++..
T Consensus 154 ~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~----------~~~l~~~~i~~iVVDEAD~ml~~~knid~~L 223 (1638)
T PRK14701 154 RLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARN----------FPEMKHLKFDFIFVDDVDAFLKASKNIDRSL 223 (1638)
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHh----------HHHHhhCCCCEEEEECceeccccccccchhh
Confidence 456677764311 1 34589999999977543 1222236799999999999963
Q ss_pred --hHHHHHHH-----h-------------------------ccCc-c-EEEEeecCCCCccchhhhhhhhCccccccCHH
Q 010991 160 --HMFRKVIS-----L-------------------------TKSH-C-KLGLTATLVREDERITDLNFLIGPKLYEANWL 205 (496)
Q Consensus 160 --~~~~~~l~-----~-------------------------l~~~-~-~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~ 205 (496)
..|+.-+. . ++.. . .+.+|||........ .+ +-.+..+.....
T Consensus 224 ~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~-~l--~~~~l~f~v~~~ 300 (1638)
T PRK14701 224 QLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV-KL--YRELLGFEVGSG 300 (1638)
T ss_pred hcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH-HH--hhcCeEEEecCC
Confidence 12321111 1 1122 2 466899986321111 11 111111111110
Q ss_pred HHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHH---HH
Q 010991 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA---LT 282 (496)
Q Consensus 206 ~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~---~~ 282 (496)
...+....-..+.+ ... .| ..+..+++.+ +..+||||++... ++
T Consensus 301 ----~~~lr~i~~~yi~~--~~~----------------------~k-~~L~~ll~~~----g~~gIVF~~t~~~~e~ae 347 (1638)
T PRK14701 301 ----RSALRNIVDVYLNP--EKI----------------------IK-EHVRELLKKL----GKGGLIFVPIDEGAEKAE 347 (1638)
T ss_pred ----CCCCCCcEEEEEEC--CHH----------------------HH-HHHHHHHHhC----CCCeEEEEeccccchHHH
Confidence 01111111111111 111 01 1223444332 5689999998764 58
Q ss_pred HHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 283 EYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 283 ~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
.+++.|. +..+||+ |...+++|++| ++++||+|
T Consensus 348 ~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT 385 (1638)
T PRK14701 348 EIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGV 385 (1638)
T ss_pred HHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEe
Confidence 8888884 4678984 89999999999 99999999
No 107
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.79 E-value=5.9e-18 Score=193.39 Aligned_cols=242 Identities=17% Similarity=0.184 Sum_probs=153.4
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCC---
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD--- 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~--- 96 (496)
...|+|+|..+++.++.+. +.++++|||+|||..++.++.. .+.++|||+||++|+.|+.+.|..++...+
T Consensus 76 g~~p~~iQ~~~i~~il~G~---d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD---SFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC---eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 4579999999999888775 8999999999999866555433 256899999999999999999999863222
Q ss_pred CcEEEEcCCcccc--------c-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-------
Q 010991 97 DQICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------- 160 (496)
Q Consensus 97 ~~v~~~~g~~~~~--------~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------- 160 (496)
..++.++|+.... + .+.++|+|+|++.|... ...+.. .++++|+||||++...
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~----------~~~l~~-~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKN----------YDELGP-KFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHH----------HHHhcC-CCCEEEEeChHhhhhccccHHHH
Confidence 2234566764311 1 24589999999988533 333432 8999999999999851
Q ss_pred ----HHH-----HHH----------------------HhccCc---cEEEEeecC-CCCccchhhhhhhhCccccccCHH
Q 010991 161 ----MFR-----KVI----------------------SLTKSH---CKLGLTATL-VREDERITDLNFLIGPKLYEANWL 205 (496)
Q Consensus 161 ----~~~-----~~l----------------------~~l~~~---~~L~LTATp-~r~d~~~~~l~~l~gp~~~~~~~~ 205 (496)
.|. .++ ..++.. ..+.+|||+ .+.... .-...+++ ++...
T Consensus 222 l~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~-~l~r~ll~---~~v~~- 296 (1171)
T TIGR01054 222 LKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA-KLFRELLG---FEVGG- 296 (1171)
T ss_pred HHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH-HHcccccc---eEecC-
Confidence 222 111 112221 135579994 332111 00001111 11000
Q ss_pred HHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccH---HHHH
Q 010991 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL---FALT 282 (496)
Q Consensus 206 ~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~---~~~~ 282 (496)
....+.+.....+.+. .+...+..++... +.++||||++. +.++
T Consensus 297 ---~~~~~r~I~~~~~~~~--------------------------~~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~ 343 (1171)
T TIGR01054 297 ---GSDTLRNVVDVYVEDE--------------------------DLKETLLEIVKKL----GTGGIVYVSIDYGKEKAE 343 (1171)
T ss_pred ---ccccccceEEEEEecc--------------------------cHHHHHHHHHHHc----CCCEEEEEeccccHHHHH
Confidence 0011111111111110 0112233444332 56799999998 9999
Q ss_pred HHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 283 EYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 283 ~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
.++..|. +..+||++++ .+++.|++| ++++||+|
T Consensus 344 ~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G-~~~vLVat 382 (1171)
T TIGR01054 344 EIAEFLENHGVKAVAYHATKPK----EDYEKFAEG-EIDVLIGV 382 (1171)
T ss_pred HHHHHHHhCCceEEEEeCCCCH----HHHHHHHcC-CCCEEEEe
Confidence 9999884 4679999973 689999999 99999996
No 108
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.6e-18 Score=190.21 Aligned_cols=304 Identities=18% Similarity=0.120 Sum_probs=198.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 18 MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 18 ~~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
+.....++|-|+|++|+..+-.+. ++++++|||+|||+++..++. ..+.++++.+|.++|.+|-+.+|..-++-
T Consensus 112 ~~~~~~F~LD~fQ~~a~~~Ler~e---sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 112 PAREYPFELDPFQQEAIAILERGE---SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred HHHhCCCCcCHHHHHHHHHHhCCC---cEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 444567899999999999655553 999999999999999665554 45678999999999999999998875441
Q ss_pred CCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhcc
Q 010991 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK 170 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~ 170 (496)
-...|++++|+.. +++++.|+|.|-+.|+++.-|..+ .+ .+...||+||+|.+.+. .|..++-.++
T Consensus 189 v~~~vGL~TGDv~--IN~~A~clvMTTEILRnMlyrg~~------~~--~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDVS--INPDAPCLVMTTEILRNMLYRGSE------SL--RDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceeccee--eCCCCceEEeeHHHHHHHhccCcc------cc--cccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 1345799999976 567788988888999988776532 22 67788999999999965 7999999888
Q ss_pred Cc-cEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcC---------CCH---HHHH----H
Q 010991 171 SH-CKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCP---------MTK---EFFS----E 232 (496)
Q Consensus 171 ~~-~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~---------~~~---~~~~----~ 232 (496)
.+ ..++||||.....+...++...-+ |...... .+-+.+....+++. -.. +.+. .
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t-------~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST-------EHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee-------cCCCCCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 87 889999998765554333332111 1110000 00000001111111 000 0000 0
Q ss_pred HH---hh-hc-HHHHHHhhh----------hCCCc-HHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------
Q 010991 233 YL---KK-EN-SKKKQALYV----------MNPNK-FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------- 289 (496)
Q Consensus 233 yl---~~-~~-~~~~~~l~~----------~~~~K-~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------- 289 (496)
+. .. .. .......++ .-+.+ ..++..|.. .+.-.+|+|+-++..|+.++..+.
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~----~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK----DNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhh----hcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 00 00 00 000000000 01111 233444432 446679999988888888777651
Q ss_pred ---------------------------------------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--------
Q 010991 290 ---------------------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------- 322 (496)
Q Consensus 290 ---------------------------------------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------- 322 (496)
+.+.|+++=+..|..+...|+.| .++|+|+|.
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G-LvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG-LVKVVFATETFAIGINM 486 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc-ceeEEeehhhhhhhcCC
Confidence 23568999889999999999999 999999988
Q ss_pred ---------cc--C----CCCChhHHHHHccCcCcCCCC
Q 010991 323 ---------IS--S----HAGSRRQEAQRLGRILRAKGK 346 (496)
Q Consensus 323 ---------i~--~----~~~s~~~~~Qr~GR~~R~g~~ 346 (496)
.. + .+-++..|.|..||+||.|-.
T Consensus 487 Partvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD 525 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLD 525 (1041)
T ss_pred cccceeeeeeEEecCCceeecChhHHHHhhhhhcccccc
Confidence 00 0 113788999999999999964
No 109
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=2.1e-18 Score=178.95 Aligned_cols=311 Identities=16% Similarity=0.143 Sum_probs=197.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.++|-|+|..|+. .+.++ .++++.+-|.+|||.+|-.+++ +-+.+|++-.|-++|.+|-+++|..=++ .|
T Consensus 127 PF~LDpFQ~~aI~-Cidr~--eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~----DV 199 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIK-CIDRG--ESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK----DV 199 (1041)
T ss_pred CcccCchHhhhhh-hhcCC--ceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc----cc
Confidence 5789999999999 55555 4999999999999999655544 4577999999999999999999876433 58
Q ss_pred EEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhccCc-cE
Q 010991 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSH-CK 174 (496)
Q Consensus 100 ~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~~~-~~ 174 (496)
++.+|+.. ++..+..+|.|-+.|+++.-|..+. | +++..||+||+|.|.+. .|...+-.++.+ +-
T Consensus 200 GLMTGDVT--InP~ASCLVMTTEILRsMLYRGSEv---m-----rEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 200 GLMTGDVT--INPDASCLVMTTEILRSMLYRGSEV---M-----REVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred ceeeccee--eCCCCceeeeHHHHHHHHHhccchH---h-----heeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 99999976 4667889999999999887775432 2 67888999999999975 577666666655 56
Q ss_pred EEEeecCCCCccchhhhhhhhC-cc--ccc-cCHHHHHhCCCCCcc---eEEEEEcC---CCHHHHHHHHhhhcHH----
Q 010991 175 LGLTATLVREDERITDLNFLIG-PK--LYE-ANWLDLVKGGFIANV---QCAEVWCP---MTKEFFSEYLKKENSK---- 240 (496)
Q Consensus 175 L~LTATp~r~d~~~~~l~~l~g-p~--~~~-~~~~~l~~~g~l~~~---~~~~v~~~---~~~~~~~~yl~~~~~~---- 240 (496)
+.||||.+.......++..+-. |. +|. +.+..| +-|+-|. -.+.|... .-.+.+..-+......
T Consensus 270 VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPL--QHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 270 VFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPL--QHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred EEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcc--eeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 8899998754443333322211 11 111 011111 1121110 01111111 1122222211100000
Q ss_pred ------HH---HHhhhhCC---CcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------------------
Q 010991 241 ------KK---QALYVMNP---NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------------------- 289 (496)
Q Consensus 241 ------~~---~~l~~~~~---~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------------------- 289 (496)
++ -...-..+ +-+.++.-++. .....+||||=++..|+.+|-.+.
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~----~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME----RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHh----hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 00 00000111 12233444432 567899999999999999987762
Q ss_pred -------------------------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------------cc-
Q 010991 290 -------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------------IS- 324 (496)
Q Consensus 290 -------------------------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------------i~- 324 (496)
+...|+++=+--.+-|.=.|++| -+++||+|. -+
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEG-LvKvLFATETFsiGLNMPAkTVvFT~~rKfD 502 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEG-LVKVLFATETFSIGLNMPAKTVVFTAVRKFD 502 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhcc-HHHHHHhhhhhhhccCCcceeEEEeeccccC
Confidence 56678888766666666679998 888888877 00
Q ss_pred ---CCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcC
Q 010991 325 ---SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 325 ---~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~ 368 (496)
..+-|-..|+|+.||+||.|-. ..+.+..+|+.
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG~D-----------drGivIlmiDe 538 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRGID-----------DRGIVILMIDE 538 (1041)
T ss_pred CcceeeecccceEEecccccccCCC-----------CCceEEEEecC
Confidence 0112445799999999999953 24667767764
No 110
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.77 E-value=9.6e-18 Score=164.50 Aligned_cols=282 Identities=15% Similarity=0.118 Sum_probs=178.9
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEE-EcCC
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR-FTSD 105 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~-~~g~ 105 (496)
-|-|++|+..+...+ .++.+++|||+||+++.-.++.-.++-++|+.|..+|+....+.+.+. .+|...... ++..
T Consensus 22 s~LQE~A~~c~VK~k--~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNSKlSt~ 98 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRK--CDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRL-KVPCESLNSKLSTV 98 (641)
T ss_pred ChHHHHHHHHHHhcc--CcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcchhhHH
Confidence 467999999888776 489999999999999987777777779999999999999988888874 343221110 1111
Q ss_pred -ccc------cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhc-CCccEEEEcCCcccCc------hHHH---HHHHh
Q 010991 106 -SKE------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA------HMFR---KVISL 168 (496)
Q Consensus 106 -~~~------~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~------~~~~---~~l~~ 168 (496)
.+. .......++..||++.+.. .+++.+..|.+ ....++|+||||.+.. +.|- .+-..
T Consensus 99 ER~ri~~DL~~ekp~~K~LYITPE~AAt~-----~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 99 ERSRIMGDLAKEKPTIKMLYITPEGAATD-----GFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred HHHHHHHHHHhcCCceeEEEEchhhhhhh-----hHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 111 0134466888999988765 35666665554 4668999999999983 2332 22233
Q ss_pred ccCccEEEEeecCCCCccchhhhhhhh---CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHH----HHHhhhcHHH
Q 010991 169 TKSHCKLGLTATLVREDERITDLNFLI---GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS----EYLKKENSKK 241 (496)
Q Consensus 169 l~~~~~L~LTATp~r~d~~~~~l~~l~---gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~----~yl~~~~~~~ 241 (496)
+.....++||||..+... +++++.+ .|. ......+--...||. +++ ......
T Consensus 174 ~~~vpwvALTATA~~~Vq--EDi~~qL~L~~PV------------------AiFkTP~FR~NLFYD~~~K~~I-~D~~~~ 232 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQ--EDIAFQLKLRNPV------------------AIFKTPTFRDNLFYDNHMKSFI-TDCLTV 232 (641)
T ss_pred CCCCceEEeecccChhHH--HHHHHHHhhcCcH------------------HhccCcchhhhhhHHHHHHHHh-hhHhHh
Confidence 444567999999764332 2332211 111 000000000011121 111 000000
Q ss_pred H---HHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCC
Q 010991 242 K---QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR 313 (496)
Q Consensus 242 ~---~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~ 313 (496)
- ..-...++.++.- .-+ .-..-.||||.+++.++.++-.|. +..+|.++...||.++.+.|-++
T Consensus 233 LaDF~~~~LG~~~~~~~------~~K-~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~- 304 (641)
T KOG0352|consen 233 LADFSSSNLGKHEKASQ------NKK-TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN- 304 (641)
T ss_pred HHHHHHHhcCChhhhhc------CCC-CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-
Confidence 0 0001112222210 000 112367999999999999999985 45689999999999999999998
Q ss_pred CccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 314 DLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 314 ~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
++.+|++|. .++...|..-|.|..||+||.|.
T Consensus 305 ~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk 351 (641)
T KOG0352|consen 305 EIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGK 351 (641)
T ss_pred CCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCC
Confidence 999999998 22333566779999999999996
No 111
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.75 E-value=1.3e-17 Score=156.53 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=110.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-hc-------CCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..|+++|.++++.++.+ ++.++++|||+|||++++.++. .. +.+++|++|+.+|+.|+.+.+..+....
T Consensus 20 ~~~~~~Q~~~~~~~~~~---~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 20 EKPTPIQARAIPPLLSG---RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCCHHHHHHHHHHhcC---CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 36899999999998875 4899999999999998544432 21 2369999999999999999999987655
Q ss_pred CCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HHHH
Q 010991 96 DDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVI 166 (496)
Q Consensus 96 ~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~l 166 (496)
+..+..+.|+.... +....+|+|+|++.+.....+.. +.-..++++|+||+|++.+..+ ..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--------~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~ 168 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--------LDLSKVKYLVLDEADRMLDMGFEDQIREIL 168 (203)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--------CChhhCCEEEEeChHHhhccChHHHHHHHH
Confidence 56677777765421 23468899999988765433221 1115688999999999876543 3344
Q ss_pred Hhcc-CccEEEEeecCCC
Q 010991 167 SLTK-SHCKLGLTATLVR 183 (496)
Q Consensus 167 ~~l~-~~~~L~LTATp~r 183 (496)
..+. ....+++||||.+
T Consensus 169 ~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 169 KLLPKDRQTLLFSATMPK 186 (203)
T ss_pred HhCCcccEEEEEeccCCH
Confidence 4444 3578999999974
No 112
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=5.5e-17 Score=176.19 Aligned_cols=286 Identities=18% Similarity=0.205 Sum_probs=177.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-cC-------------CcEEEEEeChHHHHHHHHHHH
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK-------------KSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~~-------------~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
-.|.+.|.+.....+... .+.++++|||+|||.+|+.-+.+ ++ -++.+++|.++|+..|...|.
T Consensus 308 ~sLNrIQS~v~daAl~~~--EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGD--ENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred hhhhHHHHHHHHHHhcCc--CcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 357888888888888765 59999999999999998666543 21 168999999999999999999
Q ss_pred HhhCCCCCcEEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC---chHHHH
Q 010991 90 LWSTIQDDQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP---AHMFRK 164 (496)
Q Consensus 90 ~~~~~~~~~v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~---~~~~~~ 164 (496)
+|+..-+..|...+|+...- --...+|+|+|++..--....+.+. -.. .-+.++|+||.|.+- .+....
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdr--aY~----qlvrLlIIDEIHLLhDdRGpvLES 459 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDR--AYE----QLVRLLIIDEIHLLHDDRGPVLES 459 (1674)
T ss_pred hhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCch--hHH----HHHHHHhhhhhhhcccccchHHHH
Confidence 99876667788889985421 1235789999998653222221111 011 346789999999994 333322
Q ss_pred HHH----hc----cCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHh-
Q 010991 165 VIS----LT----KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK- 235 (496)
Q Consensus 165 ~l~----~l----~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~- 235 (496)
++. +. ...+.+|||||++...+-..-| + .+...+.. +.-....||+..+ |+.
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl----~-----v~~~glf~------fd~syRpvPL~qq----~Igi 520 (1674)
T KOG0951|consen 460 IVARTFRRSESTEEGSRLVGLSATLPNYEDVASFL----R-----VDPEGLFY------FDSSYRPVPLKQQ----YIGI 520 (1674)
T ss_pred HHHHHHHHhhhcccCceeeeecccCCchhhhHHHh----c-----cCcccccc------cCcccCcCCccce----Eecc
Confidence 222 11 2236799999998665542211 1 00001100 0000011222111 110
Q ss_pred -hhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------------------------
Q 010991 236 -KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------------------------- 289 (496)
Q Consensus 236 -~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------------------------- 289 (496)
..+..++ ..+||. ...+.+++.. ..+++|||+.++...-.-|+.++
T Consensus 521 ~ek~~~~~--~qamNe---~~yeKVm~~a---gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrt 592 (1674)
T KOG0951|consen 521 TEKKPLKR--FQAMNE---ACYEKVLEHA---GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRT 592 (1674)
T ss_pred ccCCchHH--HHHHHH---HHHHHHHHhC---CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhh
Confidence 0000011 222321 1224444433 34799999998765444433321
Q ss_pred -----------------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------c------cC---C---C
Q 010991 290 -----------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------I------SS---H---A 327 (496)
Q Consensus 290 -----------------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i------~~---~---~ 327 (496)
++..|.+|+..+|..+.+.|.+| .+.++|.|. | .+ . .
T Consensus 593 ea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g-~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~e 671 (1674)
T KOG0951|consen 593 EAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTE 671 (1674)
T ss_pred hhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC-ceeEEEeehhhhhhcCCCcceEEecCccccCcccCcccc
Confidence 45678999999999999999999 999999887 1 11 1 1
Q ss_pred CChhHHHHHccCcCcCCC
Q 010991 328 GSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 328 ~s~~~~~Qr~GR~~R~g~ 345 (496)
-+|.+..|++||+||++.
T Consensus 672 lsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 672 LSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred CCHHHHHHHHhhcCCCcc
Confidence 388899999999999985
No 113
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.74 E-value=3.7e-16 Score=176.66 Aligned_cols=284 Identities=14% Similarity=0.126 Sum_probs=163.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHH-HHHhcC--CcEEEEE--eC----hHHHHHHHHHH
Q 010991 18 MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS-AACRIK--KSCLCLA--TN----AVSVDQWAFQF 88 (496)
Q Consensus 18 ~~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~-~~~~~~--~~~LIl~--P~----~~L~~Qw~~e~ 88 (496)
+..........+-.+.+..+.++. -.+|+++||||||.+ +. ++...+ ....|+| |. ++|+.+..+++
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~---VviI~GeTGSGKTTq-lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El 142 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQ---VVIVAGETGSGKTTQ-LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEEL 142 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCC---eEEEECCCCCCHHHH-HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHH
Confidence 444445666777777777544443 678889999999986 44 333332 2234443 53 46777777777
Q ss_pred HHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCc-ccCchHHH-HHH
Q 010991 89 KLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVH-VVPAHMFR-KVI 166 (496)
Q Consensus 89 ~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH-~~~~~~~~-~~l 166 (496)
..-.+ ..|+.-..- .+.......|+++|+++|....... ..+ ..+++||||||| ++.+..|. ..+
T Consensus 143 ~~~lG---~~VGY~vrf-~~~~s~~t~I~v~TpG~LL~~l~~d-------~~L--s~~~~IIIDEAHERsLn~DfLLg~L 209 (1294)
T PRK11131 143 ETELG---GCVGYKVRF-NDQVSDNTMVKLMTDGILLAEIQQD-------RLL--MQYDTIIIDEAHERSLNIDFILGYL 209 (1294)
T ss_pred hhhhc---ceeceeecC-ccccCCCCCEEEEChHHHHHHHhcC-------Ccc--ccCcEEEecCccccccccchHHHHH
Confidence 64222 122211111 1112345789999999997553221 112 689999999999 56665332 122
Q ss_pred Hh-c---cCccEEEEeecCCCCccchhhhhhhhCc-cccccCHHHHHhCCCCCcceEEEEEcCCCHHH---HHHHHhhhc
Q 010991 167 SL-T---KSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEF---FSEYLKKEN 238 (496)
Q Consensus 167 ~~-l---~~~~~L~LTATp~r~d~~~~~l~~l~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~---~~~yl~~~~ 238 (496)
.. + +...+|++|||..- ..+..+|++ .+... .|-..++.. .+.+..... ...++
T Consensus 210 k~lL~~rpdlKvILmSATid~-----e~fs~~F~~apvI~V-------~Gr~~pVei--~y~p~~~~~~~~~~d~l---- 271 (1294)
T PRK11131 210 KELLPRRPDLKVIITSATIDP-----ERFSRHFNNAPIIEV-------SGRTYPVEV--RYRPIVEEADDTERDQL---- 271 (1294)
T ss_pred HHhhhcCCCceEEEeeCCCCH-----HHHHHHcCCCCEEEE-------cCccccceE--EEeecccccchhhHHHH----
Confidence 22 2 23478999999841 123333432 12111 121122222 222221100 01111
Q ss_pred HHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC--------CCeEEcCCCHHHHHHHHHHHh
Q 010991 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFK 310 (496)
Q Consensus 239 ~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~ 310 (496)
. .++..+...+. .....+|||+++...++.+++.|. +..+||++++++|..+++.
T Consensus 272 ---~-----------~ll~~V~~l~~-~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~-- 334 (1294)
T PRK11131 272 ---Q-----------AIFDAVDELGR-EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS-- 334 (1294)
T ss_pred ---H-----------HHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--
Confidence 0 11111111222 345689999999999999999984 2358999999999999775
Q ss_pred cCCCccEEEEee--------------ccC-------------------CCCChhHHHHHccCcCcCCCCccccccCCCCc
Q 010991 311 CSRDLNTIFLSK--------------ISS-------------------HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 357 (496)
Q Consensus 311 ~~~~~~vlv~s~--------------i~~-------------------~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~ 357 (496)
.+ ..++||+|. |.. .+.|..++.||.||+||.++
T Consensus 335 ~g-~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~------------ 401 (1294)
T PRK11131 335 HS-GRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSE------------ 401 (1294)
T ss_pred cC-CeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCC------------
Confidence 34 678888887 111 11356789999999999973
Q ss_pred eeEEEEEEEcC
Q 010991 358 YNAFFYSLVST 368 (496)
Q Consensus 358 ~~~~vy~lvs~ 368 (496)
+..|+|+++
T Consensus 402 --G~c~rLyte 410 (1294)
T PRK11131 402 --GICIRLYSE 410 (1294)
T ss_pred --cEEEEeCCH
Confidence 456677764
No 114
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.73 E-value=4.9e-16 Score=176.17 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=163.5
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC----CcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~----~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
.........+..+.+.. +.++ .-.||+++||+|||-+.=.++...+ +.+++.-|.+..+......+..-.+.+
T Consensus 62 ~~~~LPi~~~~~~Il~~-l~~~--~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~ 138 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEA-IAEN--QVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTP 138 (1283)
T ss_pred CCCCCCHHHHHHHHHHH-HHhC--ceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCC
Confidence 33344555555566664 4443 3788999999999987433333332 244555688876676666666655443
Q ss_pred C-CcEEE-EcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCc-ccCchHH-----HHHHH
Q 010991 96 D-DQICR-FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVH-VVPAHMF-----RKVIS 167 (496)
Q Consensus 96 ~-~~v~~-~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH-~~~~~~~-----~~~l~ 167 (496)
. ..|+- +..+. .......|.++|.++|....... ..+ ..+++||||||| +..+..| .+++.
T Consensus 139 lG~~VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d-------~~L--~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 139 LGEKVGYKVRFHD--QVSSNTLVKLMTDGILLAETQQD-------RFL--SRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred cceEEeeEEcCCc--ccCCCceeeeccccHHHHHhhhC-------ccc--ccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 2 12221 11111 12345789999999987543211 122 689999999999 4665432 33333
Q ss_pred hccCccEEEEeecCCCCccchhhhhhhhCc-cccccCHHHHHhCCCCCcceEEEEEcCCCHHH---HHHHHhhhcHHHHH
Q 010991 168 LTKSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEF---FSEYLKKENSKKKQ 243 (496)
Q Consensus 168 ~l~~~~~L~LTATp~r~d~~~~~l~~l~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~---~~~yl~~~~~~~~~ 243 (496)
..+...+|++|||..- ..+..+|+. .+... .|-.-++.. .+.+..... ...+. ..
T Consensus 208 ~rpdLKlIlmSATld~-----~~fa~~F~~apvI~V-------~Gr~~PVev--~Y~~~~~~~~~~~~~~~-------~~ 266 (1283)
T TIGR01967 208 RRPDLKIIITSATIDP-----ERFSRHFNNAPIIEV-------SGRTYPVEV--RYRPLVEEQEDDDLDQL-------EA 266 (1283)
T ss_pred hCCCCeEEEEeCCcCH-----HHHHHHhcCCCEEEE-------CCCccccee--EEecccccccchhhhHH-------HH
Confidence 3334478999999841 233344432 12111 122222222 122221100 00111 00
Q ss_pred HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC--------CCeEEcCCCHHHHHHHHHHHhcCCCc
Q 010991 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDL 315 (496)
Q Consensus 244 ~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~~~~ 315 (496)
+ ..++..++ . .....+|||+++...++.+++.|. +..+||++++++|.++++. .+..
T Consensus 267 i--------~~~I~~l~---~-~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~---~~~r 331 (1283)
T TIGR01967 267 I--------LDAVDELF---A-EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQP---HSGR 331 (1283)
T ss_pred H--------HHHHHHHH---h-hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCC---CCCc
Confidence 0 01222222 2 234689999999999999999884 3358999999999998544 3245
Q ss_pred cEEEEee-------------ccC--------------------CCCChhHHHHHccCcCcCCCCccccccCCCCceeEEE
Q 010991 316 NTIFLSK-------------ISS--------------------HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFF 362 (496)
Q Consensus 316 ~vlv~s~-------------i~~--------------------~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~v 362 (496)
++||+|. +++ ..-|..++.||.||+||.++ +..
T Consensus 332 kIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~--------------G~c 397 (1283)
T TIGR01967 332 RIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAP--------------GIC 397 (1283)
T ss_pred eEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCC--------------ceE
Confidence 7777776 111 11266789999999999984 456
Q ss_pred EEEEcCC
Q 010991 363 YSLVSTD 369 (496)
Q Consensus 363 y~lvs~~ 369 (496)
|.|.+++
T Consensus 398 yRLyte~ 404 (1283)
T TIGR01967 398 IRLYSEE 404 (1283)
T ss_pred EEecCHH
Confidence 7777643
No 115
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.72 E-value=4.3e-16 Score=150.77 Aligned_cols=267 Identities=17% Similarity=0.171 Sum_probs=179.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
+.||.|..+++..+.+. .+++++|||.||+++.-.++.-..+-+|||||..+|++...-+++.. ++.......-++
T Consensus 94 kfrplq~~ain~~ma~e---d~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkql-gi~as~lnanss 169 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGE---DAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQL-GIDASMLNANSS 169 (695)
T ss_pred hcChhHHHHhhhhhccC---ceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHh-CcchhhccCccc
Confidence 47999999999888775 89999999999999988888778889999999999999888888774 554322211111
Q ss_pred Ccccc--------ccCCCcEEEEchHHhhcccCCChhHHHHHHHH----hcCCccEEEEcCCcccCc------hHH--HH
Q 010991 105 DSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI----RNREWGLLLMDEVHVVPA------HMF--RK 164 (496)
Q Consensus 105 ~~~~~--------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l----~~~~~~~vIlDEaH~~~~------~~~--~~ 164 (496)
....+ -.....++..||+.++.. ..+|..| ....|.++-+||+|+... +.| -.
T Consensus 170 ke~~k~v~~~i~nkdse~kliyvtpekiaks-------k~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 170 KEEAKRVEAAITNKDSEFKLIYVTPEKIAKS-------KKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred HHHHHHHHHHHcCCCceeEEEEecHHHHHHH-------HHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 10000 123456888999998754 3444433 336788999999999872 222 22
Q ss_pred HH-HhccCccEEEEeecCCCCccc-hhhhhhhhCccccccCHHHHHhCCCCCcce-EEEEEcCCCHHHHHHHHhhhcHHH
Q 010991 165 VI-SLTKSHCKLGLTATLVREDER-ITDLNFLIGPKLYEANWLDLVKGGFIANVQ-CAEVWCPMTKEFFSEYLKKENSKK 241 (496)
Q Consensus 165 ~l-~~l~~~~~L~LTATp~r~d~~-~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~-~~~v~~~~~~~~~~~yl~~~~~~~ 241 (496)
++ .+++....||||||.....-. ..++..+-....| ..||-.|-. +..+..|-+.+...+-+
T Consensus 243 ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf--------~a~fnr~nl~yev~qkp~n~dd~~edi------- 307 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF--------RAGFNRPNLKYEVRQKPGNEDDCIEDI------- 307 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee--------ecccCCCCceeEeeeCCCChHHHHHHH-------
Confidence 33 346677899999997643211 1121111111111 245554433 33344454444322211
Q ss_pred HHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCcc
Q 010991 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (496)
Q Consensus 242 ~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~ 316 (496)
..+++.. -.|+..||||-+...++.++..|+ +..+|..+.+++|.-+-+.|-.| ++.
T Consensus 308 ---------------~k~i~~~--f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiq 369 (695)
T KOG0353|consen 308 ---------------AKLIKGD--FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQ 369 (695)
T ss_pred ---------------HHHhccc--cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceE
Confidence 2233211 358889999999999999999995 56789999999999999999998 999
Q ss_pred EEEEee---------------ccCCCCChhHHHH
Q 010991 317 TIFLSK---------------ISSHAGSRRQEAQ 335 (496)
Q Consensus 317 vlv~s~---------------i~~~~~s~~~~~Q 335 (496)
|+|+|- .-+.+.|...|.|
T Consensus 370 vivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 370 VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred EEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 999988 2345567888899
No 116
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.72 E-value=9e-17 Score=145.99 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=109.6
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEE
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (496)
.|+|.+++..+.+++ +.++.+|||+|||.+++.++.. + ...++|++|+++|++|..+++..++......+..
T Consensus 1 t~~Q~~~~~~i~~~~---~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGK---NVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTS---EEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCC---CEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 389999999888543 8999999999999998766543 2 2389999999999999999999997666667888
Q ss_pred EcCCcccc------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhcc-
Q 010991 102 FTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK- 170 (496)
Q Consensus 102 ~~g~~~~~------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~- 170 (496)
++++.... +...++|+|+|++++........ . .+ ...++||+||+|.+... .+..++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-----~-~~--~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK-----I-NI--SRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS-----S-TG--TTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccCcchhhccccccc-----c-cc--ccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 77765421 23579999999999875532200 0 11 34899999999999874 3445555542
Q ss_pred --CccEEEEeecCC
Q 010991 171 --SHCKLGLTATLV 182 (496)
Q Consensus 171 --~~~~L~LTATp~ 182 (496)
..+++++||||.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 357899999996
No 117
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.71 E-value=4.9e-16 Score=171.79 Aligned_cols=306 Identities=18% Similarity=0.133 Sum_probs=176.5
Q ss_pred CCcHHHHHHHHHHHhcCCCc-ceEEEeCCCCChHHHHHHHHHh-------cCCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACR-------IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~~~~-------~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
..+++|.+++.......... .+++.+|||+|||.+++.++.. ...+++.+.|.++++++.++.++.+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 45999999999887765445 7889999999999997776543 245899999999999999999999875543
Q ss_pred CcEEEEcCCccccccC-C-------------------CcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcc
Q 010991 97 DQICRFTSDSKERFRG-N-------------------AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV 156 (496)
Q Consensus 97 ~~v~~~~g~~~~~~~~-~-------------------~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~ 156 (496)
......+|........ . +.+++++.+.+...... ..... +.. .-.+++|+||+|.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~---l~~S~vIlDE~h~ 349 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKG-FKFEF-LAL---LLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccc-cchHH-HHH---HHhhchhhccHHh
Confidence 2222133332221111 1 11222222322211111 11111 112 2456899999999
Q ss_pred cCch-HHHH---HHHhcc--CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHH
Q 010991 157 VPAH-MFRK---VISLTK--SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230 (496)
Q Consensus 157 ~~~~-~~~~---~l~~l~--~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~ 230 (496)
+... +..- ++..+. ....|.+|||++.... ..+...+++....... ....+... +.+ ......
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~--~~l~~~~~~~~~~~~~-----~~~~~~~~--e~~--~~~~~~ 418 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLK--EKLKKALGKGREVVEN-----AKFCPKED--EPG--LKRKER 418 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHH--HHHHHHHhcccceecc-----cccccccc--ccc--cccccc
Confidence 9976 4432 333332 3478999999973222 1222222222111100 00000000 000 000000
Q ss_pred HHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHH
Q 010991 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKI 305 (496)
Q Consensus 231 ~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~i 305 (496)
.... ..+. ......+.... ..|.+++|.|+++..+..+++.|+ +.++|+.+...+|.+.
T Consensus 419 ~~~~-------------~~~~-~~~~~~~~~~~--~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~k 482 (733)
T COG1203 419 VDVE-------------DGPQ-EELIELISEEV--KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEK 482 (733)
T ss_pred hhhh-------------hhhh-Hhhhhcchhhh--ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHH
Confidence 0000 0000 01111222222 568999999999999999999995 5678999999999988
Q ss_pred HHHHh----cCCCccEEEEee------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCC
Q 010991 306 LQAFK----CSRDLNTIFLSK------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 306 l~~F~----~~~~~~vlv~s~------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
++... .+ ...++|+|. +.+........+||+||++|.|.. .+..+++|......
T Consensus 483 e~~l~~~~~~~-~~~IvVaTQVIEagvDidfd~mITe~aPidSLIQR~GRv~R~g~~---------~~~~~~v~~~~~~~ 552 (733)
T COG1203 483 ERELKKLFKQN-EGFIVVATQVIEAGVDIDFDVLITELAPIDSLIQRAGRVNRHGKK---------ENGKIYVYNDEERG 552 (733)
T ss_pred HHHHHHHHhcc-CCeEEEEeeEEEEEeccccCeeeecCCCHHHHHHHHHHHhhcccc---------cCCceeEeecccCC
Confidence 77544 33 556777766 344556778899999999999943 23356666655444
Q ss_pred ChH
Q 010991 370 TQE 372 (496)
Q Consensus 370 t~e 372 (496)
...
T Consensus 553 ~~~ 555 (733)
T COG1203 553 PYL 555 (733)
T ss_pred Cch
Confidence 433
No 118
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.2e-15 Score=166.04 Aligned_cols=129 Identities=17% Similarity=0.118 Sum_probs=86.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
..+++.|.-+--.+.. +-|..++||+|||+++..++.. .+..++||+|+..|+.|-.+.+..+...-+..++
T Consensus 81 ~~~ydvQliGg~~Lh~-----G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~ 155 (896)
T PRK13104 81 LRHFDVQLIGGMVLHE-----GNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVG 155 (896)
T ss_pred CCcchHHHhhhhhhcc-----CccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEE
Confidence 3455557666553332 3378899999999997665542 3568999999999999988888877665567788
Q ss_pred EEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 101 ~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
++.|+.... ..-.++|+++|++.|..+.-|..-.-..-+.+ .+.+.++|+||||.+.
T Consensus 156 ~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v-~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 156 VIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKV-QRELNFAIVDEVDSIL 215 (896)
T ss_pred EEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhh-ccccceEEeccHhhhh
Confidence 887764321 12257999999999733322211000011112 2688999999999886
No 119
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.68 E-value=6.5e-16 Score=142.89 Aligned_cols=152 Identities=25% Similarity=0.335 Sum_probs=109.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCC-
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD- 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~- 96 (496)
..+++|+|.+++..+.... ..+++.+|||+|||.+++.++... ..++||++|+..++.||.+++..++....
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~--~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL--RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC--CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 4678999999999888762 389999999999999766665543 25799999999999999999998764332
Q ss_pred CcEEEEcCCcccc----cc-CCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc----hHHHHHHH
Q 010991 97 DQICRFTSDSKER----FR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA----HMFRKVIS 167 (496)
Q Consensus 97 ~~v~~~~g~~~~~----~~-~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~----~~~~~~l~ 167 (496)
.....+.+..... +. ...+|+++|++.+........ +....++++|+||+|++.. ..+..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--------~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--------LELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--------cCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 3344455543210 12 223899999998875532211 1225788999999999996 34555666
Q ss_pred hc-cCccEEEEeecCCCC
Q 010991 168 LT-KSHCKLGLTATLVRE 184 (496)
Q Consensus 168 ~l-~~~~~L~LTATp~r~ 184 (496)
.+ +..+++++||||...
T Consensus 156 ~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 156 LLPKNVQLLLLSATPPEE 173 (201)
T ss_pred hCCccceEEEEecCCchh
Confidence 55 456889999999743
No 120
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.67 E-value=3.7e-16 Score=136.11 Aligned_cols=128 Identities=22% Similarity=0.246 Sum_probs=95.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC-----CcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc-----ccCCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-----FRGNA 114 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~-----~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~-----~~~~~ 114 (496)
+++|.+|||+|||.+++.++.... ++++|+||+..++.||.+.+..+... ...+..+.+..... .....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 679999999999999888876642 68999999999999999999998643 34566666554332 14568
Q ss_pred cEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH-----HHHhccCccEEEEeecC
Q 010991 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-----VISLTKSHCKLGLTATL 181 (496)
Q Consensus 115 ~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~-----~l~~l~~~~~L~LTATp 181 (496)
+|+++|++++....... ......++++|+||+|.+.+..+.. ........+++++||||
T Consensus 81 ~i~i~t~~~~~~~~~~~--------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERL--------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcC--------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 89999999886442211 0112579999999999999775443 23334556899999998
No 121
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=2.4e-15 Score=138.82 Aligned_cols=259 Identities=17% Similarity=0.200 Sum_probs=161.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH-HhcC-----CcEEEEEeChHHHHHHHHHHHHhhC-CCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRIK-----KSCLCLATNAVSVDQWAFQFKLWST-IQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~-~~~~-----~~~LIl~P~~~L~~Qw~~e~~~~~~-~~~~ 97 (496)
.+-..|.++++..+-+. +.+..+-.|.|||.+.+... ..+- ..+||+|.+++|+.|+.+++.+|+. .|..
T Consensus 64 hpsevqhecipqailgm---dvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~v 140 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSV 140 (387)
T ss_pred CchHhhhhhhhHHhhcc---hhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCc
Confidence 35677999999877665 78888999999998854443 3332 2699999999999999999999876 5778
Q ss_pred cEEEEcCCcc-----ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHHHHHHhcc
Q 010991 98 QICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTK 170 (496)
Q Consensus 98 ~v~~~~g~~~-----~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~l~ 170 (496)
++.+|.|+.. +.+...++|+|+||+.+..... ...+.-.+....|+|||+.+... +++.+-+.++
T Consensus 141 kvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr--------~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr 212 (387)
T KOG0329|consen 141 KVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVR--------NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR 212 (387)
T ss_pred eEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHH--------hccCchhhcceeehhhHHHHHHHHHHHHHHHHHhh
Confidence 8999998854 2245678999999998764421 11222356778999999998854 5554444442
Q ss_pred ----CccEEEEeecCCCCccchhhhhhhhCcc-ccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHh
Q 010991 171 ----SHCKLGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (496)
Q Consensus 171 ----~~~~L~LTATp~r~d~~~~~l~~l~gp~-~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l 245 (496)
....+.+|||...+-.....- +.-.|. +|-.+-..+. +. -..+-|+ +
T Consensus 213 ~tp~~KQvmmfsatlskeiRpvC~k-FmQdPmEi~vDdE~KLt----------------LH-GLqQ~Yv-k--------- 264 (387)
T KOG0329|consen 213 MTPHEKQVMMFSATLSKEIRPVCHK-FMQDPMEIFVDDEAKLT----------------LH-GLQQYYV-K--------- 264 (387)
T ss_pred cCcccceeeeeeeecchhhHHHHHh-hhcCchhhhccchhhhh----------------hh-hHHHHHH-h---------
Confidence 236789999986432111000 000110 1111100000 00 1122233 1
Q ss_pred hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcCCCeEEcCCCHHHHHHHHHHHhcC---CCccEEEEee
Q 010991 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCS---RDLNTIFLSK 322 (496)
Q Consensus 246 ~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~~~~i~G~~~~~eR~~il~~F~~~---~~~~vlv~s~ 322 (496)
.....|...+..|++.++ -.+++||..++..+. -..|.-.-+-|-.| ..+|+.|-
T Consensus 265 -Lke~eKNrkl~dLLd~Le---FNQVvIFvKsv~Rl~----------------f~kr~vat~lfgrgmdiervNi~~N-- 322 (387)
T KOG0329|consen 265 -LKENEKNRKLNDLLDVLE---FNQVVIFVKSVQRLS----------------FQKRLVATDLFGRGMDIERVNIVFN-- 322 (387)
T ss_pred -hhhhhhhhhhhhhhhhhh---hcceeEeeehhhhhh----------------hhhhhHHhhhhccccCcccceeeec--
Confidence 112233345566776665 568999999988733 12333334455544 23444443
Q ss_pred ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.+.+.++..|++|+||+||-|.
T Consensus 323 -Ydmp~~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 323 -YDMPEDSDTYLHRVARAGRFGT 344 (387)
T ss_pred -cCCCCCchHHHHHhhhhhcccc
Confidence 3467788899999999999994
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.65 E-value=5e-14 Score=152.94 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=63.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCC--CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 18 MELKPHAQPRPYQEKSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 18 ~~l~~~~~lr~yQ~~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
+.|...+.+.-.|-+++..+..+-. .+..+|.+.||+|||++...++...++|+|||+|+..++.||+.+|+.|+
T Consensus 2 f~~~~~~~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~ 78 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFF 78 (655)
T ss_pred ceeccCCCCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhC
Confidence 4566778889999999998765421 12557889999999999999999899999999999999999999999985
No 123
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.64 E-value=4.3e-17 Score=173.10 Aligned_cols=284 Identities=19% Similarity=0.273 Sum_probs=188.9
Q ss_pred CCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
...|.|||.+++++..-. ..+-.+|++++||.|||++++.+...+ ..+.|+++|.++. -.|..+|..|. +
T Consensus 293 ~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~-~nwe~e~~~wa--p 369 (696)
T KOG0383|consen 293 GGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTI-VNWEREFELWA--P 369 (696)
T ss_pred CccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccc-cCCCCchhccC--C
Confidence 467899999999964321 233589999999999999987776553 3589999999985 55999999994 5
Q ss_pred CCcEEEEcCCcccc-----------------------c----cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccE
Q 010991 96 DDQICRFTSDSKER-----------------------F----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGL 148 (496)
Q Consensus 96 ~~~v~~~~g~~~~~-----------------------~----~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~ 148 (496)
...|..+.|..+.. . .-.+++..++|+++... ...+....|++
T Consensus 370 ~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~----------~~il~~v~w~~ 439 (696)
T KOG0383|consen 370 SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEID----------QSILFSVQWGL 439 (696)
T ss_pred CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccC----------HHHHhhhhcce
Confidence 55566666654421 0 01245777788777654 23344469999
Q ss_pred EEEcCCcccCch--HHHHHHHhccCccEEEEeecCCCCccch--------------------------------hhhhhh
Q 010991 149 LLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI--------------------------------TDLNFL 194 (496)
Q Consensus 149 vIlDEaH~~~~~--~~~~~l~~l~~~~~L~LTATp~r~d~~~--------------------------------~~l~~l 194 (496)
+|+||+|++++. .+-+.+...+..++++||+||.++.-.. ..+..+
T Consensus 440 livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l 519 (696)
T KOG0383|consen 440 LIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLL 519 (696)
T ss_pred eEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccc
Confidence 999999999986 4555777788889999999999653221 112223
Q ss_pred hCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhh--c------H-------------HHH-----------
Q 010991 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE--N------S-------------KKK----------- 242 (496)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~--~------~-------------~~~----------- 242 (496)
.+|...++-..+..+. ++......+...+++-+...|-... + . ++.
T Consensus 520 ~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e 597 (696)
T KOG0383|consen 520 LCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEE 597 (696)
T ss_pred cCchhhhhhhhhhccC--CCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcCcccCcccc
Confidence 3333333333333322 2333333444445544333221100 0 0 000
Q ss_pred ---------HHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC----CCeEEcCCCHHHHHHHHHHH
Q 010991 243 ---------QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPMIYGATSHVERTKILQAF 309 (496)
Q Consensus 243 ---------~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~----~~~i~G~~~~~eR~~il~~F 309 (496)
......+.+|+..+..+++.+. ..|+||++|++.+..++.+.+.+. +..++|.....+|+..+++|
T Consensus 598 ~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~-~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~ 676 (696)
T KOG0383|consen 598 PLEENGEYLGSALIKASGKLTLLLKMLKKLK-SSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRF 676 (696)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhcccc
Confidence 0001234567778888887766 789999999999999999999995 67799999999999999999
Q ss_pred hc-CCCccEEEEee
Q 010991 310 KC-SRDLNTIFLSK 322 (496)
Q Consensus 310 ~~-~~~~~vlv~s~ 322 (496)
+. +..-.++++|+
T Consensus 677 n~~~~~~~cfllst 690 (696)
T KOG0383|consen 677 NAPGSNQFCFLLST 690 (696)
T ss_pred CCCCccceEEEeec
Confidence 95 32445566655
No 124
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=5.3e-15 Score=160.91 Aligned_cols=130 Identities=18% Similarity=0.059 Sum_probs=88.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...+++.|.-+.-.+ .. +-|..+.||.|||+++..++. ..++.+-||+|+..|+.|-.+.+..+...-+..+
T Consensus 79 g~~~~dvQlig~l~L-~~----G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv 153 (830)
T PRK12904 79 GMRHFDVQLIGGMVL-HE----GKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSV 153 (830)
T ss_pred CCCCCccHHHhhHHh-cC----CchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeE
Confidence 445667787776633 32 237889999999999765553 2356788999999999998888877765556678
Q ss_pred EEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+++.|+.... ..-.++|+++|+..+..+.-|..-... .+.+..+.+.++|+|||+.+.
T Consensus 154 ~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~-~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 154 GVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFS-LEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred EEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccc-hhhhcccccceEEEechhhhe
Confidence 8888764321 112478999999988544322211100 112223688899999999886
No 125
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.63 E-value=4.1e-15 Score=159.25 Aligned_cols=294 Identities=18% Similarity=0.191 Sum_probs=173.9
Q ss_pred CCcHHHHHHHHH--HHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSK--MFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~--~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.++.+|.+++.. .+.. .+.|..+||+.|||+++-.++.. .++.++.+.|-.+.+..-...+..++.--+..
T Consensus 223 ~~fewq~ecls~~~~~e~---~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLER---KNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHHhcchhhhcc---cceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 567778877763 2322 59999999999999997555443 36789999998766555555566654333445
Q ss_pred EEEEcCCcc-ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH--------HHHHHHhc
Q 010991 99 ICRFTSDSK-ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--------FRKVISLT 169 (496)
Q Consensus 99 v~~~~g~~~-~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~--------~~~~l~~l 169 (496)
|..|.|... ......-.|.|+|.++-.....+ .++.=.....|+||+||.|.+.... ..+++-..
T Consensus 300 ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~------lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~ 373 (1008)
T KOG0950|consen 300 VEEYAGRFPPEKRRKRESVAIATIEKANSLINS------LIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYEN 373 (1008)
T ss_pred chhhcccCCCCCcccceeeeeeehHhhHhHHHH------HHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhc
Confidence 666665432 22334567999999887655332 2222222577999999999998652 22222222
Q ss_pred cCc--cEEEEeecCCCCccchhhhhhhhCccccc-cCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH-HHHHh
Q 010991 170 KSH--CKLGLTATLVREDERITDLNFLIGPKLYE-ANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK-KKQAL 245 (496)
Q Consensus 170 ~~~--~~L~LTATp~r~d~~~~~l~~l~gp~~~~-~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~-~~~~l 245 (496)
... ..+|+|||..........|...+-+..|+ ..+.+.++-|.+ ...+ . ....+ +.-.. .-...
T Consensus 374 ~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~----i~~~------~-r~~~l-r~ia~l~~~~~ 441 (1008)
T KOG0950|consen 374 LETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSL----IYES------S-RNKVL-REIANLYSSNL 441 (1008)
T ss_pred cccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcc----cccc------h-hhHHH-HHhhhhhhhhc
Confidence 222 48999999976555443333222222111 111111111111 0000 0 00111 00000 00001
Q ss_pred hhhCCC-cHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc------------------------------------
Q 010991 246 YVMNPN-KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------------ 288 (496)
Q Consensus 246 ~~~~~~-K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L------------------------------------ 288 (496)
-..+|. -...|.+.+ ..|.++||||.++.-++.++..+
T Consensus 442 g~~dpD~~v~L~tet~-----~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~V 516 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETA-----PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPV 516 (1008)
T ss_pred ccCCCcceeeehhhhh-----hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchH
Confidence 112221 112333443 45778999999998888776544
Q ss_pred -------CCCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------c------cCCCCChhHHHHHccCcCc
Q 010991 289 -------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------I------SSHAGSRRQEAQRLGRILR 342 (496)
Q Consensus 289 -------~~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i------~~~~~s~~~~~Qr~GR~~R 342 (496)
++.++|.+++.+||+.+-..|++| .+.++++|. | ...+-..-+|.|++||+||
T Consensus 517 l~~ti~~GvAyHhaGLT~eER~~iE~afr~g-~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 517 LAKTIPYGVAYHHAGLTSEEREIIEAAFREG-NIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HheeccccceecccccccchHHHHHHHHHhc-CeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 056788999999999999999998 888888877 1 1222466789999999999
Q ss_pred CCC
Q 010991 343 AKG 345 (496)
Q Consensus 343 ~g~ 345 (496)
.|-
T Consensus 596 ~gi 598 (1008)
T KOG0950|consen 596 TGI 598 (1008)
T ss_pred ccc
Confidence 985
No 126
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=7.4e-15 Score=159.15 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=89.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...+++-|.-+.-.+ ..| -|.-+.||.|||+++..++. ..+..+-|++|+-.|+.|-.+.+..|...-+..|
T Consensus 78 g~~~~dvQlig~l~l-~~G----~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~v 152 (796)
T PRK12906 78 GLRPFDVQIIGGIVL-HEG----NIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTV 152 (796)
T ss_pred CCCCchhHHHHHHHH-hcC----CcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeE
Confidence 455677788776643 332 37889999999999765553 3578999999999999997777777665555678
Q ss_pred EEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
++..++.... -.-.++|+.+|...+..+.-|..-.... +..-.+.+.+.|+|||+.+.
T Consensus 153 g~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~-~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 153 GLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYK-EQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred EEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccch-hhhhccCcceeeeccchhee
Confidence 8887764321 1235789999987777654443211111 12223688899999999875
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.57 E-value=1e-12 Score=133.10 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=66.3
Q ss_pred ccccCCCCCCcHHHHHHHHHHHhc--CCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 17 NMELKPHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 17 ~~~l~~~~~lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
.+.|...+.+-.-|-+|+..+..+ +..+.-++.+.||+|||.+....++..++|+||++|.++|+.|.+.||+.|+
T Consensus 4 ~F~l~s~f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fF 81 (663)
T COG0556 4 PFKLHSPFKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFF 81 (663)
T ss_pred ceEeccCCCCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHHhC
Confidence 456777788888999999988654 1124678899999999999999999999999999999999999999999987
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.56 E-value=1.6e-12 Score=142.11 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=63.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 18 MELKPHAQPRPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 18 ~~l~~~~~lr~yQ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
+.+...+.|.+.|..++..+..+- ..++.+|.+.+|+|||+.+..++...++++|||+|+...+.||.++|..|+
T Consensus 5 ~~~~~~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL~~~~ 81 (652)
T PRK05298 5 FKLVSPYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEFKEFF 81 (652)
T ss_pred cccccCCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhc
Confidence 457788999999999999876542 112467889999999999888888788999999999999999999999885
No 129
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2.1e-13 Score=148.28 Aligned_cols=130 Identities=17% Similarity=0.057 Sum_probs=84.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...+++.|.-+--.+.. +-|..++||.|||+++..++.. .++.+.||+|+..|+.|-.+.+..+...-+..+
T Consensus 80 gm~~ydVQliGgl~L~~-----G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv 154 (908)
T PRK13107 80 EMRHFDVQLLGGMVLDS-----NRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTV 154 (908)
T ss_pred CCCcCchHHhcchHhcC-----CccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 34456667765553332 3478899999999997665543 356899999999999985555554444445577
Q ss_pred EEEcCCccc--ccc-CCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSDSKE--RFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~~--~~~-~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+++.++... ... -.++|+++|++.+..+.-|..-....-+.+ .+.+.++|+|||+.+.
T Consensus 155 ~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~v-qr~~~~aIvDEvDsiL 215 (908)
T PRK13107 155 GINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERV-QRPLHYALIDEVDSIL 215 (908)
T ss_pred EEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhh-ccccceeeecchhhhc
Confidence 777666432 112 258999999988754443332110111122 3688899999999886
No 130
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.50 E-value=5.2e-13 Score=150.75 Aligned_cols=313 Identities=17% Similarity=0.148 Sum_probs=182.5
Q ss_pred cHHHHHHHHHHH----h---cCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 27 RPYQEKSLSKMF----G---NGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 27 r~yQ~~al~~~~----~---~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
+.+|..++.... . .+.+++|+|++-+|||||++.+.++..+ ...+++|+....|-.|..++|..+...
T Consensus 250 ~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~ 329 (962)
T COG0610 250 RYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKV 329 (962)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHh
Confidence 455666665322 1 1345689999999999999988777654 247999999999999999999997532
Q ss_pred CCCcEEEEcCC-cccccc-CCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH-HhccC
Q 010991 95 QDDQICRFTSD-SKERFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI-SLTKS 171 (496)
Q Consensus 95 ~~~~v~~~~g~-~~~~~~-~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l-~~l~~ 171 (496)
........++. .++.+. ....|+|||.+.+....... ......++.-+||+||||+.-.....+.+ ..++.
T Consensus 330 ~~~~~~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~------~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~~ 403 (962)
T COG0610 330 AFNDPKAESTSELKELLEDGKGKIIVTTIQKFNKAVKED------ELELLKRKNVVVIIDEAHRSQYGELAKLLKKALKK 403 (962)
T ss_pred hhhcccccCHHHHHHHHhcCCCcEEEEEecccchhhhcc------cccccCCCcEEEEEechhhccccHHHHHHHHHhcc
Confidence 11101111111 112223 34589999999987653221 01112355559999999998876544443 44566
Q ss_pred ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEE-EcCCCHHHHH-------HHHhhh--c---
Q 010991 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV-WCPMTKEFFS-------EYLKKE--N--- 238 (496)
Q Consensus 172 ~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v-~~~~~~~~~~-------~yl~~~--~--- 238 (496)
...+|+||||+...+.. .-...+|..+..++..+.+..|...++.+... ......+... ...... .
T Consensus 404 a~~~gFTGTPi~~~d~~-tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (962)
T COG0610 404 AIFIGFTGTPIFKEDKD-TTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILE 482 (962)
T ss_pred ceEEEeeCCcccccccc-chhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHH
Confidence 78899999999776654 22457888888999999999998886655543 2222211111 111000 0
Q ss_pred -HH---HHHHhhhhCC-CcHHHHHHHHHHhh--hcCCCeEEEEeccHHHHHHHHHHcC---------------------C
Q 010991 239 -SK---KKQALYVMNP-NKFRACEFLIRFHE--QQRGDKIIVFADNLFALTEYAMKLR---------------------K 290 (496)
Q Consensus 239 -~~---~~~~l~~~~~-~K~~~l~~ll~~~~--~~~g~kiIVF~~~~~~~~~l~~~L~---------------------~ 290 (496)
.. .+.-...+.+ ...++...+.+... ...+.++++.+.+...+..+.+... .
T Consensus 483 ~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 562 (962)
T COG0610 483 KIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTE 562 (962)
T ss_pred HHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhh
Confidence 00 0000111222 22334444443332 1445688888888774433333321 0
Q ss_pred CeEEcC------CCHHHHHHHHHHH-hcCCCccEEEEee-ccCCCC-------------ChhHHHHHccCcCcCCCC
Q 010991 291 PMIYGA------TSHVERTKILQAF-KCSRDLNTIFLSK-ISSHAG-------------SRRQEAQRLGRILRAKGK 346 (496)
Q Consensus 291 ~~i~G~------~~~~eR~~il~~F-~~~~~~~vlv~s~-i~~~~~-------------s~~~~~Qr~GR~~R~g~~ 346 (496)
...... ....++.....+| .....++.+|++. .+..+. -....+|++-|+.|+-++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK~Lk~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 563 FETDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDKPLKYHNLIQAISRTNRVFPG 639 (962)
T ss_pred cccchhhhhhhHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEeccccccchHHHHHHHhccCCCC
Confidence 001111 1223344455554 3334789999888 222222 224579999999999986
No 131
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=7.5e-12 Score=136.65 Aligned_cols=134 Identities=16% Similarity=0.039 Sum_probs=92.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c--CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I--KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~--~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
...+.++|||.+++..+..+. +.|..++||+|||++++.++.. . +.+++||+|++.|+.|-.+.+..+....+.
T Consensus 88 ~~p~~~tp~qvQ~I~~i~l~~---gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGL 164 (970)
T PRK12899 88 HQQWDMVPYDVQILGAIAMHK---GFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGL 164 (970)
T ss_pred cCCCCCChHHHHHhhhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 334558999999999877764 7788899999999997766543 2 357999999999999977777766544445
Q ss_pred cEEEEcCCcccc---ccCCCcEEEEchHHh-hcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 98 QICRFTSDSKER---FRGNAGVVVTTYNMV-AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 98 ~v~~~~g~~~~~---~~~~~~IiItT~~~l-~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.++.+.|+.... -.-.++|+|+|++.| ....+...-.....+.+ .+.+.++|+|||+.+.
T Consensus 165 sV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~v-qr~~~~~IIDEADsmL 228 (970)
T PRK12899 165 TTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQV-GRGFYFAIIDEVDSIL 228 (970)
T ss_pred eEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhh-cccccEEEEechhhhh
Confidence 677776663311 112489999999988 32222210111111222 2678899999999886
No 132
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.45 E-value=1.5e-11 Score=128.28 Aligned_cols=270 Identities=17% Similarity=0.182 Sum_probs=160.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHhhCC-CCCc
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTI-QDDQ 98 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~~~ 98 (496)
..++.|-.+.+..+-.+. -.||+++||+|||-+.=-.+... .+.+-+.-|.++.+....+....=.+. .+..
T Consensus 50 LPI~~~r~~il~~ve~nq---vlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 50 LPIYKYRDQILYAVEDNQ---VLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred CCHHHHHHHHHHHHHHCC---EEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 344555555566444443 78999999999998865555443 345667778887766666555442221 2223
Q ss_pred EE---EEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC--ch----HHHHHHHhc
Q 010991 99 IC---RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP--AH----MFRKVISLT 169 (496)
Q Consensus 99 v~---~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~--~~----~~~~~l~~l 169 (496)
|+ .|.... .....|...|-++|.+..-. +-+ -.++++||+||||.=. .. -.++++..-
T Consensus 127 VGY~IRFed~t----s~~TrikymTDG~LLRE~l~--------Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R 193 (674)
T KOG0922|consen 127 VGYTIRFEDST----SKDTRIKYMTDGMLLREILK--------DPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKR 193 (674)
T ss_pred eeeEEEecccC----CCceeEEEecchHHHHHHhc--------CCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcC
Confidence 32 222221 23467999999999644211 111 2689999999999643 22 233344433
Q ss_pred cCccEEEEeecCCCCccchhhhhhhhCc-cccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhh
Q 010991 170 KSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (496)
Q Consensus 170 ~~~~~L~LTATp~r~d~~~~~l~~l~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~ 248 (496)
+.-+.|.+|||.- ...+..+|+. .++. -.|-.-|+......-+ -..|+.
T Consensus 194 ~~LklIimSATld-----a~kfS~yF~~a~i~~-------i~GR~fPVei~y~~~p-----~~dYv~------------- 243 (674)
T KOG0922|consen 194 PDLKLIIMSATLD-----AEKFSEYFNNAPILT-------IPGRTFPVEILYLKEP-----TADYVD------------- 243 (674)
T ss_pred CCceEEEEeeeec-----HHHHHHHhcCCceEe-------ecCCCCceeEEeccCC-----chhhHH-------------
Confidence 3447899999983 2223333332 2211 1444444443322211 123441
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------------CCeEEcCCCHHHHHHHHHHHhcCCCc
Q 010991 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------------KPMIYGATSHVERTKILQAFKCSRDL 315 (496)
Q Consensus 249 ~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------------~~~i~G~~~~~eR~~il~~F~~~~~~ 315 (496)
.++..+++.|...+..-||||-...+.++..++.|. +..+||.++.++..++.+.--.| .-
T Consensus 244 -----a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g-~R 317 (674)
T KOG0922|consen 244 -----AALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG-KR 317 (674)
T ss_pred -----HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC-cc
Confidence 234444555533344479999999999888888773 23589999999988886554443 44
Q ss_pred cEEEEee---------------------------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 316 NTIFLSK---------------------------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 316 ~vlv~s~---------------------------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+|+++|. ..-.+-|..+-.||.||+||.++
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~p 380 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGP 380 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCC
Confidence 5565555 01112377888999999999995
No 133
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.42 E-value=8.4e-12 Score=134.95 Aligned_cols=124 Identities=17% Similarity=0.250 Sum_probs=95.8
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCC-C
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQD-D 97 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~-~ 97 (496)
..+.|+..|+--...++.+. +.-+.+|||.|||--++..+. ..++++++|+||+.|+.|..+.+.++..-.+ .
T Consensus 79 ~G~~~ws~QR~WakR~~rg~---SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLVRGK---SFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred hCCCchHHHHHHHHHHHcCC---ceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 35688999999888888775 999999999999977655543 3467999999999999999999999862211 2
Q ss_pred cEEE-EcCCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 98 QICR-FTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 98 ~v~~-~~g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.+.. |++..+.. -.++.+|+|||-+.|... .+.|.+.+|++|++|-++.+.
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~----------~e~L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKR----------FEELSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhh----------HHHhcccCCCEEEEccHHHHH
Confidence 3322 77763321 247899999999988643 567777899999999999865
No 134
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.40 E-value=3.9e-13 Score=132.51 Aligned_cols=268 Identities=18% Similarity=0.212 Sum_probs=160.9
Q ss_pred cEEEEEeChHHHHHHHH---HHHHhhCCCCCcEEE-EcCCccc----cccCCCcEEEEchHHhhcccCCChhHHHHHHHH
Q 010991 70 SCLCLATNAVSVDQWAF---QFKLWSTIQDDQICR-FTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI 141 (496)
Q Consensus 70 ~~LIl~P~~~L~~Qw~~---e~~~~~~~~~~~v~~-~~g~~~~----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l 141 (496)
..+|+-|+++|.+|... +|+.++.-|..+-.+ ++|..+. .+..+.+|+|.|+..+...... ..+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--------g~~ 359 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--------GLV 359 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--------cce
Confidence 58999999999999888 455544334333223 3333221 2456789999999987544221 111
Q ss_pred hcCCccEEEEcCCcccCchHHHHHHHhccC-----------ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhC
Q 010991 142 RNREWGLLLMDEVHVVPAHMFRKVISLTKS-----------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 210 (496)
Q Consensus 142 ~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~-----------~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~ 210 (496)
.-....++|+||++-+....|...+.++.. .+.+..|||..-.+-+. + -.....-..|.+|...
T Consensus 360 ~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk--~---~ervmhfptwVdLkge 434 (725)
T KOG0349|consen 360 TLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKK--V---GERVMHFPTWVDLKGE 434 (725)
T ss_pred eeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeee--h---hhhhccCceeEecccc
Confidence 124567899999999998766555544321 14577889875322210 0 0001111245566433
Q ss_pred CCCCcceEEEEE---cCCCHHHH---HHHHhhhcHHHHHHhh--hhCCC------cH---HHHHHHHHHhhhcCCCeEEE
Q 010991 211 GFIANVQCAEVW---CPMTKEFF---SEYLKKENSKKKQALY--VMNPN------KF---RACEFLIRFHEQQRGDKIIV 273 (496)
Q Consensus 211 g~l~~~~~~~v~---~~~~~~~~---~~yl~~~~~~~~~~l~--~~~~~------K~---~~l~~ll~~~~~~~g~kiIV 273 (496)
..++. ....+. ||-.+..+ +.++.......+..+. ..+|. |+ +-+-..++.| ..++.||
T Consensus 435 D~vpe-tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h---~mdkaii 510 (725)
T KOG0349|consen 435 DLVPE-TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH---AMDKAII 510 (725)
T ss_pred cccch-hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh---ccCceEE
Confidence 33332 222222 22221111 1223222111111111 11111 11 1112223333 4789999
Q ss_pred EeccHHHHHHHHHHcC--------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCCh
Q 010991 274 FADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSR 330 (496)
Q Consensus 274 F~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~ 330 (496)
||.++..++.|.++++ +..+||+..+.||.+.++.|+.. +++.+|+|+ -+..+...
T Consensus 511 fcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkflictdvaargldi~g~p~~invtlpd~k 589 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKFLICTDVAARGLDITGLPFMINVTLPDDK 589 (725)
T ss_pred EEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEEEEEehhhhccccccCCceEEEEecCccc
Confidence 9999999999999984 67799999999999999999998 999999999 23455677
Q ss_pred hHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcC
Q 010991 331 RQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 331 ~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~ 368 (496)
..|++|+||+||+-+ -....+||..
T Consensus 590 ~nyvhrigrvgraer-------------mglaislvat 614 (725)
T KOG0349|consen 590 TNYVHRIGRVGRAER-------------MGLAISLVAT 614 (725)
T ss_pred chhhhhhhccchhhh-------------cceeEEEeec
Confidence 889999999999874 4667788864
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.37 E-value=8.4e-11 Score=132.86 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=50.5
Q ss_pred CCCCCcHHHHHHHHHH---HhcCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHH
Q 010991 22 PHAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAF 86 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~ 86 (496)
+.++.||.|.+.+..+ +..+ +.+++.+|||+|||+..+.++... +++++|.+||++|..||..
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~--~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHS--EKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccC--CcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 5678999999866643 4444 478899999999999987776543 5699999999999999865
No 136
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.2e-10 Score=127.93 Aligned_cols=283 Identities=17% Similarity=0.176 Sum_probs=160.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHhhCCC-CCc
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DDQ 98 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~-~~~ 98 (496)
.....+..+-+..+-.+. -.+|++|||+|||-+.=.++... .+.+.+.=|.+..+....+.+..-.+.+ +..
T Consensus 49 LPv~~~~~~i~~ai~~~~---vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 49 LPVTAVRDEILKAIEQNQ---VVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred CCcHHHHHHHHHHHHhCC---EEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 344555555555444443 88999999999997743333332 3466667788876666666666544332 233
Q ss_pred EEE-EcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC-ch-----HHHHHHHhccC
Q 010991 99 ICR-FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AH-----MFRKVISLTKS 171 (496)
Q Consensus 99 v~~-~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~~-----~~~~~l~~l~~ 171 (496)
|+- +-.+.+ ......|-+.|-++|....... ..| ..+++||+||+|.=. +. ....++...+.
T Consensus 126 VGY~iRfe~~--~s~~Trik~mTdGiLlrei~~D-------~~L--s~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 126 VGYSIRFESK--VSPRTRIKVMTDGILLREIQND-------PLL--SGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred eeEEEEeecc--CCCCceeEEeccHHHHHHHhhC-------ccc--ccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 431 111111 2334678899999997543211 122 789999999999755 22 22334454553
Q ss_pred -ccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhC
Q 010991 172 -HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (496)
Q Consensus 172 -~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~ 249 (496)
-.+|.+|||.- ...+..+|+ ..+.+. .|---|+.... .+.....+. +
T Consensus 195 DLKiIimSATld-----~~rfs~~f~~apvi~i-------~GR~fPVei~Y--~~~~~~d~~--l--------------- 243 (845)
T COG1643 195 DLKLIIMSATLD-----AERFSAYFGNAPVIEI-------EGRTYPVEIRY--LPEAEADYI--L--------------- 243 (845)
T ss_pred CceEEEEecccC-----HHHHHHHcCCCCEEEe-------cCCccceEEEe--cCCCCcchh--H---------------
Confidence 46788999983 223444454 222221 22222332221 111111110 1
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC---------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---------KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~---------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
...+...+..+......-+|||-.-....+..++.|. +.-+||.++.++..++++--..+ .=+|+++
T Consensus 244 ---~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~-~RKVVlA 319 (845)
T COG1643 244 ---LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGG-KRKVVLA 319 (845)
T ss_pred ---HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCC-cceEEEE
Confidence 0222333333322345689999999988887766663 33489999999998875444333 2235555
Q ss_pred ee---------------------------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEc
Q 010991 321 SK---------------------------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 367 (496)
Q Consensus 321 s~---------------------------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs 367 (496)
|. ....+-|..+..||.||+||.++ ...|+|.+
T Consensus 320 TNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p--------------GicyRLys 385 (845)
T COG1643 320 TNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP--------------GICYRLYS 385 (845)
T ss_pred ccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC--------------ceEEEecC
Confidence 54 01112367778999999999995 45677776
Q ss_pred CC
Q 010991 368 TD 369 (496)
Q Consensus 368 ~~ 369 (496)
++
T Consensus 386 e~ 387 (845)
T COG1643 386 EE 387 (845)
T ss_pred HH
Confidence 53
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.31 E-value=2e-10 Score=124.45 Aligned_cols=142 Identities=19% Similarity=0.178 Sum_probs=106.5
Q ss_pred CCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
...|-+-|..++..+... +.....++.+.||+|||.+.+.++.. .++.+|||+|-..|..|..+.|+..++ .+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg---~~ 272 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG---AK 272 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC---CC
Confidence 457889999999988765 22357899999999999998777765 467999999999999999999999876 46
Q ss_pred EEEEcCCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-----hHH-H
Q 010991 99 ICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-----HMF-R 163 (496)
Q Consensus 99 v~~~~g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-----~~~-~ 163 (496)
|.+++++..+. ..+...|+|.|...+..- -.+.++||+||=|--.- +.| .
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P---------------f~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP---------------FKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc---------------hhhccEEEEeccccccccCCcCCCcCH
Confidence 88888875532 247899999999876322 16889999999997651 111 1
Q ss_pred HHHH----hccCccEEEEeecCC
Q 010991 164 KVIS----LTKSHCKLGLTATLV 182 (496)
Q Consensus 164 ~~l~----~l~~~~~L~LTATp~ 182 (496)
+-+. ......+++=||||.
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCC
Confidence 1222 222335666699996
No 138
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.28 E-value=2.3e-10 Score=122.87 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=100.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCC-
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD- 97 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~- 97 (496)
+.+-.+|.+-+...=.+. +++|++||-+|||.+...++... .+-++.++|+++|++|........+..+..
T Consensus 510 F~Pd~WQ~elLDsvDr~e---SavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNE---SAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhccc---ceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 456778999888544443 99999999999999987777653 347899999999999987766544321111
Q ss_pred cEEEEcCCccccc---cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhcc
Q 010991 98 QICRFTSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK 170 (496)
Q Consensus 98 ~v~~~~g~~~~~~---~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~ 170 (496)
.....-|.....+ .-.++|+||-++-+....-..+. ...++ .+..++|+||+|.+.+. -+..++..++
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~---~q~~c--erIRyiIfDEVH~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPH---HQKFC--ERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchh---hhhhh--hcceEEEechhhhccccccchHHHHHHHhcC
Confidence 1112222222111 23589999999887655332111 22333 46679999999999975 3555555444
Q ss_pred CccEEEEeecCCCC
Q 010991 171 SHCKLGLTATLVRE 184 (496)
Q Consensus 171 ~~~~L~LTATp~r~ 184 (496)
. ..|+||||.-..
T Consensus 662 C-P~L~LSATigN~ 674 (1330)
T KOG0949|consen 662 C-PFLVLSATIGNP 674 (1330)
T ss_pred C-CeeEEecccCCH
Confidence 3 459999997643
No 139
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=2.2e-10 Score=125.66 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=85.2
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHH---HHHHHHHHhhC
Q 010991 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD---QWAFQFKLWST 93 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~---Qw~~e~~~~~~ 93 (496)
..+...+++.|.-+--.+..+ -|.-+.||=|||+++..++.. .++.|=||+.+--|+. +|...+-.|+|
T Consensus 133 ~~wdm~~ydVQLiGgivLh~G-----~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flG 207 (1025)
T PRK12900 133 MTWDMVPYDVQLIGGIVLHSG-----KISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHG 207 (1025)
T ss_pred cccCccccchHHhhhHHhhcC-----CccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhC
Confidence 344566677787776644433 377899999999997655432 3566767666666654 59999999887
Q ss_pred CCCCcEEEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 94 IQDDQICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+ .|+++..+.... -.=.++|+.+|-.-+.++.-|.+-....-+.+ .+.+.+.|+|||+.+.
T Consensus 208 L---tVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~v-qR~~~faIVDEvDSvL 271 (1025)
T PRK12900 208 L---SVGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMV-QRDFYFAIVDEVDSVL 271 (1025)
T ss_pred C---eeeeeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhh-ccCCceEEEechhhhh
Confidence 6 466654432211 12358899999777766655543222222233 4788999999999875
No 140
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.23 E-value=2.4e-10 Score=118.71 Aligned_cols=269 Identities=16% Similarity=0.148 Sum_probs=152.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc--CCcEEEEE--eChHHHHHHHHHHHHhhCCC-CCcEE---EEcCCccccccCCCc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLA--TNAVSVDQWAFQFKLWSTIQ-DDQIC---RFTSDSKERFRGNAG 115 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~--~~~~LIl~--P~~~L~~Qw~~e~~~~~~~~-~~~v~---~~~g~~~~~~~~~~~ 115 (496)
.-.+|+++||+|||-+....+..- ...-+|-| |.++.+....+....=.+.+ +..|+ .|..-. .....
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT----~~~T~ 447 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVT----SEDTK 447 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecC----CCcee
Confidence 378889999999998865555442 22334444 77776666666655533322 11221 121111 12355
Q ss_pred EEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC-ch-----HHHHHHHhccCccEEEEeecCCCCccchh
Q 010991 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AH-----MFRKVISLTKSHCKLGLTATLVREDERIT 189 (496)
Q Consensus 116 IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~~-----~~~~~l~~l~~~~~L~LTATp~r~d~~~~ 189 (496)
|-..|-+.|... .+.+.. -.++.+||+||||.=. |. .++.++..-..-..|..|||.- ..
T Consensus 448 IkymTDGiLLrE--------sL~d~~-L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~-----a~ 513 (1042)
T KOG0924|consen 448 IKYMTDGILLRE--------SLKDRD-LDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD-----AQ 513 (1042)
T ss_pred EEEeccchHHHH--------Hhhhhh-hhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc-----HH
Confidence 777887777532 111111 1689999999999755 32 2334444333346688899973 33
Q ss_pred hhhhhhCc-cccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCC
Q 010991 190 DLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRG 268 (496)
Q Consensus 190 ~l~~l~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g 268 (496)
.+..+||. ..+.. .|---|+.... .. .-...|++ .++...+..|...+.
T Consensus 514 kf~nfFgn~p~f~I-------pGRTyPV~~~~--~k---~p~eDYVe------------------aavkq~v~Ihl~~~~ 563 (1042)
T KOG0924|consen 514 KFSNFFGNCPQFTI-------PGRTYPVEIMY--TK---TPVEDYVE------------------AAVKQAVQIHLSGPP 563 (1042)
T ss_pred HHHHHhCCCceeee-------cCCccceEEEe--cc---CchHHHHH------------------HHHhhheEeeccCCC
Confidence 45566762 22211 22222332221 11 22234442 234445555553444
Q ss_pred CeEEEEeccHHH----HHHHHHHcC-----------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-----------
Q 010991 269 DKIIVFADNLFA----LTEYAMKLR-----------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------- 322 (496)
Q Consensus 269 ~kiIVF~~~~~~----~~~l~~~L~-----------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------- 322 (496)
.-++||..-.+. ++.+...|. +.-|+..+|+.-..++++.--.| .-++||+|.
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~-vRK~IvATNIAETSLTi~gI 642 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG-VRKCIVATNIAETSLTIPGI 642 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC-ceeEEEeccchhhceeecce
Confidence 578899765443 445555442 44589999998887776654454 566777766
Q ss_pred ----------------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHH
Q 010991 323 ----------------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 375 (496)
Q Consensus 323 ----------------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~ 375 (496)
+...+-|..+--||.||+||.|+ ...|+|.++++....+
T Consensus 643 ~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p--------------G~cYRlYTe~ay~~em 703 (1042)
T KOG0924|consen 643 RYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP--------------GTCYRLYTEDAYKNEM 703 (1042)
T ss_pred EEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCC--------------cceeeehhhhHHHhhc
Confidence 01112366677899999999996 5678888887765544
No 141
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=3.8e-10 Score=120.61 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=90.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...+++.|.-+...++.+ -|.-+.||.|||+++..++. ..++.+-||+|+..|+.|-.+.+..+...-+..|
T Consensus 76 g~r~ydvQlig~l~Ll~G-----~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsv 150 (764)
T PRK12326 76 GLRPFDVQLLGALRLLAG-----DVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTV 150 (764)
T ss_pred CCCcchHHHHHHHHHhCC-----CcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 456777798888866644 37789999999999766554 3477899999999999986666666554445678
Q ss_pred EEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+.+.++.... ..-.++|+.+|-..+..+.-|..-.... +..-.+.+.++|+|||+.+.
T Consensus 151 g~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~-~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 151 GWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDV-ADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccCh-HhhcCCccceeeecchhhhe
Confidence 8887764421 1124789999987776665444322111 22223788999999999875
No 142
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.21 E-value=8.8e-11 Score=101.47 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=72.9
Q ss_pred ceEEEeCCCCChHHHHHHHHH----hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEc
Q 010991 45 SGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~----~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT 120 (496)
--+|-+.+|+|||--.+.-+. ..+.++|||.||++++....+.++. .+ +..-+.-......+...|-+.|
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~---~~---~~~~t~~~~~~~~g~~~i~vMc 79 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG---LP---VRFHTNARMRTHFGSSIIDVMC 79 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT---SS---EEEESTTSS----SSSSEEEEE
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc---CC---cccCceeeeccccCCCcccccc
Confidence 457788999999987655433 3577999999999999988777754 22 2221111111123456788999
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHHHHHHhcc---CccEEEEeecCCCC
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTK---SHCKLGLTATLVRE 184 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~l~---~~~~L~LTATp~r~ 184 (496)
|..+.... ++-....+|+++|+||||..-.. .++-.+..+. ....|.+||||+-.
T Consensus 80 ~at~~~~~---------~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 80 HATYGHFL---------LNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp HHHHHHHH---------HTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred cHHHHHHh---------cCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 98775431 11222378999999999997644 3444443332 23678999999843
No 143
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.9e-10 Score=118.97 Aligned_cols=209 Identities=18% Similarity=0.201 Sum_probs=121.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC---C----c--EEEEEeChHHHHHHHHHHHHhhCCCCCcEE---EEcCCcccccc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK---K----S--CLCLATNAVSVDQWAFQFKLWSTIQDDQIC---RFTSDSKERFR 111 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~---~----~--~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~---~~~g~~~~~~~ 111 (496)
.-+||+++||+|||-+.=-++...+ . + +=|--|.++.+--+.+....=++.-+..|+ .|.|...+
T Consensus 272 ~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~e--- 348 (1172)
T KOG0926|consen 272 PVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIGE--- 348 (1172)
T ss_pred CeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccccCC---
Confidence 3789999999999988655555432 1 3 445568887666655554433333333443 46666443
Q ss_pred CCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC-c-h----HHHHHHH----------hccCccEE
Q 010991 112 GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-A-H----MFRKVIS----------LTKSHCKL 175 (496)
Q Consensus 112 ~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~-~----~~~~~l~----------~l~~~~~L 175 (496)
...|-+.|-+.|.. .+...|.-.++++||+||||.=. + . +..+++. .++.-..|
T Consensus 349 -~T~IkFMTDGVLLr---------Ei~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLI 418 (1172)
T KOG0926|consen 349 -DTSIKFMTDGVLLR---------EIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLI 418 (1172)
T ss_pred -CceeEEecchHHHH---------HHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEE
Confidence 47799999998863 33444445899999999999654 2 1 2222221 11233568
Q ss_pred EEeecCCCCccchh-hhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHH
Q 010991 176 GLTATLVREDERIT-DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (496)
Q Consensus 176 ~LTATp~r~d~~~~-~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~ 254 (496)
.+|||+--.|=... .|+.+..| +...+..+. |+. ..+-.-++. .|+. +
T Consensus 419 IMSATLRVsDFtenk~LFpi~pP-likVdARQf-------PVs--IHF~krT~~---DYi~------------------e 467 (1172)
T KOG0926|consen 419 IMSATLRVSDFTENKRLFPIPPP-LIKVDARQF-------PVS--IHFNKRTPD---DYIA------------------E 467 (1172)
T ss_pred EEeeeEEecccccCceecCCCCc-eeeeecccC-------ceE--EEeccCCCc---hHHH------------------H
Confidence 99999865543322 44444444 433332111 111 111112222 3331 2
Q ss_pred HHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC--CCeEEcC
Q 010991 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--KPMIYGA 296 (496)
Q Consensus 255 ~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~--~~~i~G~ 296 (496)
+.......|+.-+..-||||..--..++.|+++|+ .++.||+
T Consensus 468 AfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~ 511 (1172)
T KOG0926|consen 468 AFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGG 511 (1172)
T ss_pred HHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCcccccc
Confidence 23333344543456689999999999999999996 3444543
No 144
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.14 E-value=1.1e-09 Score=113.78 Aligned_cols=271 Identities=18% Similarity=0.155 Sum_probs=151.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCC-C
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD-D 97 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~-~ 97 (496)
...++|-.+-+.++-.+. =.||+++||+|||-+.=-.+... ++.+-+--|.++.+........+=.+..- .
T Consensus 264 LPVy~ykdell~av~e~Q---VLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQ---VLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred CCchhhHHHHHHHHHhCc---EEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 456777777777655553 67889999999998854444332 23355556888777766666554332211 1
Q ss_pred cEE---EEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC-c-h-HHH--HHHHhc
Q 010991 98 QIC---RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-A-H-MFR--KVISLT 169 (496)
Q Consensus 98 ~v~---~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~-~-~~~--~~l~~l 169 (496)
.|+ .|..-. .....|-..|-+||..- +.....-..+++||+||||.=- + . .|. +-+..+
T Consensus 341 eVGYsIRFEdcT----SekTvlKYMTDGmLlRE---------fL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 341 EVGYSIRFEDCT----SEKTVLKYMTDGMLLRE---------FLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF 407 (902)
T ss_pred ccceEEEecccc----CcceeeeeecchhHHHH---------HhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh
Confidence 111 121111 12355778899998632 2222222578999999999643 2 2 222 223334
Q ss_pred cCc-cEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhh
Q 010991 170 KSH-CKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (496)
Q Consensus 170 ~~~-~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~ 247 (496)
+.. ..|..|||.- ......+|+ ..+|..+- ---|+......+| -..|++
T Consensus 408 RpdLKllIsSAT~D-----AekFS~fFDdapIF~iPG-------RRyPVdi~Yt~~P-----EAdYld------------ 458 (902)
T KOG0923|consen 408 RPDLKLLISSATMD-----AEKFSAFFDDAPIFRIPG-------RRYPVDIFYTKAP-----EADYLD------------ 458 (902)
T ss_pred CCcceEEeeccccC-----HHHHHHhccCCcEEeccC-------cccceeeecccCC-----chhHHH------------
Confidence 444 4566799973 112223333 22222211 1112221111111 123441
Q ss_pred hCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHH-------HcC-------CCeEEcCCCHHHHHHHHHHHhcCC
Q 010991 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAM-------KLR-------KPMIYGATSHVERTKILQAFKCSR 313 (496)
Q Consensus 248 ~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~-------~L~-------~~~i~G~~~~~eR~~il~~F~~~~ 313 (496)
.++..++..|-..+..-||||-.--+..+...+ .|+ +.-||..+|.+....|++---.|
T Consensus 459 ------Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g- 531 (902)
T KOG0923|consen 459 ------AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG- 531 (902)
T ss_pred ------HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC-
Confidence 345566666655677789999876655444444 443 34589999998887774433333
Q ss_pred CccEEEEee---------------------------------ccCCCCChhHHHHHccCcCcCCCC
Q 010991 314 DLNTIFLSK---------------------------------ISSHAGSRRQEAQRLGRILRAKGK 346 (496)
Q Consensus 314 ~~~vlv~s~---------------------------------i~~~~~s~~~~~Qr~GR~~R~g~~ 346 (496)
.-+|+++|. .+..+-|...-.||.||+||.||+
T Consensus 532 aRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPG 597 (902)
T KOG0923|consen 532 ARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPG 597 (902)
T ss_pred ceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCC
Confidence 356666666 112224677789999999999964
No 145
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.10 E-value=4.4e-10 Score=97.10 Aligned_cols=92 Identities=27% Similarity=0.341 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----
Q 010991 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---- 322 (496)
Q Consensus 252 K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---- 322 (496)
|...+..++..+. ..+.++||||++...++.+++.|. +.++||+++..+|..+++.|+++ ...++++|.
T Consensus 13 k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~ili~t~~~~~ 90 (131)
T cd00079 13 KLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEcChhhc
Confidence 4455556665443 367899999999999999999984 56799999999999999999998 788888777
Q ss_pred -----------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 -----------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 -----------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+...++++..+.|++||++|.|+
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCC
Confidence 45678899999999999999994
No 146
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.10 E-value=2.4e-09 Score=118.50 Aligned_cols=170 Identities=13% Similarity=0.161 Sum_probs=107.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC-----CcEEEEEeChHHHHHHHHHHH---------HhhCCCCCcEEEEcCCcc---
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFK---------LWSTIQDDQICRFTSDSK--- 107 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~-----~~~LIl~P~~~L~~Qw~~e~~---------~~~~~~~~~v~~~~g~~~--- 107 (496)
+..+.|+||+|||.+++..+..+. .++||+||+.++.+....-+. ...+-....+.++.+..+
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~ 140 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKS 140 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccccc
Confidence 678899999999999888876652 479999999998877664433 211111233455655431
Q ss_pred ------cc---c-------cCCCcEEEEchHHhhcccC--CChh------HHHHHHHHhcCCccEEEEcCCcccCc--hH
Q 010991 108 ------ER---F-------RGNAGVVVTTYNMVAFGGK--RSEE------SEKIIEEIRNREWGLLLMDEVHVVPA--HM 161 (496)
Q Consensus 108 ------~~---~-------~~~~~IiItT~~~l~~~~~--r~~~------~~~~~~~l~~~~~~~vIlDEaH~~~~--~~ 161 (496)
.. + .+...|+|+|.+++..... +.++ ....++.+...++ +||+||.|++.+ ..
T Consensus 141 gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~P-ivIiDEPh~~~~~~k~ 219 (986)
T PRK15483 141 GRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRP-VVIIDEPHRFPRDNKF 219 (986)
T ss_pred ccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCC-EEEEECCCCCCcchHH
Confidence 00 1 1146899999999976421 1110 0123445544444 899999999975 35
Q ss_pred HHHHHHhccCccEEEEeecCCCC-----ccchhhhhhhhCccccccCHHHHHhCCCCCcceE
Q 010991 162 FRKVISLTKSHCKLGLTATLVRE-----DERITDLNFLIGPKLYEANWLDLVKGGFIANVQC 218 (496)
Q Consensus 162 ~~~~l~~l~~~~~L~LTATp~r~-----d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~ 218 (496)
|. .+..+.+.++|..|||-... ..+.... . ....+|..+..++..++.+....+
T Consensus 220 ~~-~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~-d-~~NlvY~LdavdAyn~~LVK~I~V 278 (986)
T PRK15483 220 YQ-AIEALKPQMIIRFGATFPDITEGKGKNKCTRK-D-YYNLQFDLNAVDSFNDGLVKGVDI 278 (986)
T ss_pred HH-HHHhcCcccEEEEeeecCCccccccccccccc-c-ccCceeecCHHHHHHhCCcceEEE
Confidence 54 56888999999999998641 1111110 0 125577888888887777665443
No 147
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=1.7e-09 Score=118.26 Aligned_cols=129 Identities=18% Similarity=0.097 Sum_probs=88.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
..+++.|.-+--.+.. +-|.-+.||.|||+++..++. ..++.|-||+|+-.|+.|-.+.+..++..-+..|+
T Consensus 81 m~~ydVQliGg~~Lh~-----G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~ 155 (913)
T PRK13103 81 MRHFDVQLIGGMTLHE-----GKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVG 155 (913)
T ss_pred CCcchhHHHhhhHhcc-----CccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 4556667766553332 347889999999999765553 35779999999999999977777777665567888
Q ss_pred EEcCCccccc---cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 101 RFTSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 101 ~~~g~~~~~~---~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+++++....- .-.++|+++|...+.++.-|..-....-+.+ .+.++++|+||+|.+.
T Consensus 156 ~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~v-qr~l~~aIVDEvDsiL 215 (913)
T PRK13103 156 IVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKF-QRELNFAVIDEVDSIL 215 (913)
T ss_pred EECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhc-ccccceeEechhhhee
Confidence 8877643211 1238899999888644433321111111222 3789999999999886
No 148
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.08 E-value=1.9e-09 Score=110.06 Aligned_cols=229 Identities=21% Similarity=0.215 Sum_probs=139.8
Q ss_pred EEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccccc---CCCcEEEEchHH
Q 010991 47 IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR---GNAGVVVTTYNM 123 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~---~~~~IiItT~~~ 123 (496)
.=++||.+|||.-|+.-.... ++.++.-|.+-|+...++.+..- |+| ..+++|..+.... ..++.+-+|.+|
T Consensus 195 ~H~GPTNSGKTy~ALqrl~~a-ksGvycGPLrLLA~EV~~r~na~-gip---CdL~TGeE~~~~~~~~~~a~hvScTVEM 269 (700)
T KOG0953|consen 195 MHVGPTNSGKTYRALQRLKSA-KSGVYCGPLRLLAHEVYDRLNAL-GIP---CDLLTGEERRFVLDNGNPAQHVSCTVEM 269 (700)
T ss_pred EEeCCCCCchhHHHHHHHhhh-ccceecchHHHHHHHHHHHhhhc-CCC---ccccccceeeecCCCCCcccceEEEEEE
Confidence 345899999998877655544 36788899999998888888763 443 4567777654322 247788899998
Q ss_pred hhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhccCccEEEEeecCCCCccchhhhhhhhCccc
Q 010991 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKL 199 (496)
Q Consensus 124 l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~ 199 (496)
..-. ..+++.||||.+.|.++ .|.+.+- ||-|--+ .++|..
T Consensus 270 ~sv~----------------~~yeVAViDEIQmm~Dp~RGwAWTrALL--------Gl~AdEi----------HLCGep- 314 (700)
T KOG0953|consen 270 VSVN----------------TPYEVAVIDEIQMMRDPSRGWAWTRALL--------GLAADEI----------HLCGEP- 314 (700)
T ss_pred eecC----------------CceEEEEehhHHhhcCcccchHHHHHHH--------hhhhhhh----------hccCCc-
Confidence 8643 68999999999999976 4554443 3322211 122211
Q ss_pred cccCHHHHHh-----CCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEE
Q 010991 200 YEANWLDLVK-----GGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (496)
Q Consensus 200 ~~~~~~~l~~-----~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF 274 (496)
...++++ -|--..+..++...|+..+. .++..+ +.. .+|+.++-|
T Consensus 315 ---svldlV~~i~k~TGd~vev~~YeRl~pL~v~~------------------------~~~~sl-~nl--k~GDCvV~F 364 (700)
T KOG0953|consen 315 ---SVLDLVRKILKMTGDDVEVREYERLSPLVVEE------------------------TALGSL-SNL--KPGDCVVAF 364 (700)
T ss_pred ---hHHHHHHHHHhhcCCeeEEEeecccCcceehh------------------------hhhhhh-ccC--CCCCeEEEe
Confidence 0011110 01111111111111221110 011111 111 579988889
Q ss_pred eccH-HH-HHHHHHHcC--CCeEEcCCCHHHHHHHHHHHhc--CCCccEEEEee-------------cc-CC--------
Q 010991 275 ADNL-FA-LTEYAMKLR--KPMIYGATSHVERTKILQAFKC--SRDLNTIFLSK-------------IS-SH-------- 326 (496)
Q Consensus 275 ~~~~-~~-~~~l~~~L~--~~~i~G~~~~~eR~~il~~F~~--~~~~~vlv~s~-------------i~-~~-------- 326 (496)
+... .. -..+.+..+ +.+|+|++|++.|.+--..|++ + +++++|+|+ ++ +.
T Consensus 365 Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~-e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~ 443 (700)
T KOG0953|consen 365 SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSN-ECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRET 443 (700)
T ss_pred ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCC-ccceEEeecccccccccceeEEEEeecccCCcccc
Confidence 8643 22 223344433 7899999999999999999998 5 899999999 11 11
Q ss_pred -CCChhHHHHHccCcCcCCCC
Q 010991 327 -AGSRRQEAQRLGRILRAKGK 346 (496)
Q Consensus 327 -~~s~~~~~Qr~GR~~R~g~~ 346 (496)
.-...|..|..||+||-|.+
T Consensus 444 ~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 444 EDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred eeccHHHHHHHhhcccccccC
Confidence 12446789999999999854
No 149
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.06 E-value=1.1e-08 Score=112.57 Aligned_cols=298 Identities=14% Similarity=0.125 Sum_probs=162.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cC--CcEEEEEeChHHHHHHHHHHHHh-hCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IK--KSCLCLATNAVSVDQWAFQFKLW-STIQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~--~~~LIl~P~~~L~~Qw~~e~~~~-~~~~ 95 (496)
+...+.+++..++.+-++. -.+|.++||+|||.+.-.++.. .+ .++++--|.+-.+--..++...= +...
T Consensus 171 ~LPa~~~r~~Il~~i~~~q---VvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 171 SLPAYKMRDTILDAIEENQ---VVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred hCccHHHHHHHHHHHHhCc---eEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 3345677777777655554 7899999999999997655543 22 34555557654333333333221 1122
Q ss_pred CCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc--h----HHHHHHHhc
Q 010991 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--H----MFRKVISLT 169 (496)
Q Consensus 96 ~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~----~~~~~l~~l 169 (496)
+..|+---+-.+. ......+.++|.+.|.....- ...+ .....||+||+|.=.- . ..+.++..-
T Consensus 248 g~~VGYqvrl~~~-~s~~t~L~fcTtGvLLr~L~~-------~~~l--~~vthiivDEVHER~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 248 GEEVGYQVRLESK-RSRETRLLFCTTGVLLRRLQS-------DPTL--SGVTHIIVDEVHERSINTDFLLILLKDLLPRN 317 (924)
T ss_pred CCeeeEEEeeecc-cCCceeEEEecHHHHHHHhcc-------Cccc--ccCceeeeeeEEEccCCcccHHHHHHHHhhhC
Confidence 2233321111111 122377999999988644221 1122 5788999999997542 2 122233322
Q ss_pred cCccEEEEeecCCCCccchhhhhhhhCc-cccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH-----H---
Q 010991 170 KSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-----K--- 240 (496)
Q Consensus 170 ~~~~~L~LTATp~r~d~~~~~l~~l~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~-----~--- 240 (496)
+.-++|++|||.- .+....+||. .+... .|.-- |...-+.++.+..... .
T Consensus 318 p~LkvILMSAT~d-----ae~fs~YF~~~pvi~i-------~grtf---------pV~~~fLEDil~~~~~~~~~~~~~~ 376 (924)
T KOG0920|consen 318 PDLKVILMSATLD-----AELFSDYFGGCPVITI-------PGRTF---------PVKEYFLEDILSKTGYVSEDDSARS 376 (924)
T ss_pred CCceEEEeeeecc-----hHHHHHHhCCCceEee-------cCCCc---------chHHHHHHHHHHHhccccccccccc
Confidence 3347899999984 2223334441 11000 01100 1111111111100000 0
Q ss_pred -------HHHHhhhhCC-CcHHHHHHHHHHhhh-cCCCeEEEEeccHHHHHHHHHHcC------------CCeEEcCCCH
Q 010991 241 -------KKQALYVMNP-NKFRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLR------------KPMIYGATSH 299 (496)
Q Consensus 241 -------~~~~l~~~~~-~K~~~l~~ll~~~~~-~~g~kiIVF~~~~~~~~~l~~~L~------------~~~i~G~~~~ 299 (496)
....+.+..+ -....+..++.+.-. .....||||......+..+...|. +..+|+.++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s 456 (924)
T KOG0920|consen 377 GPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPS 456 (924)
T ss_pred ccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCCh
Confidence 0000112222 345667777765431 235689999999999999999884 2347999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEee---------------------------------ccCCCCChhHHHHHccCcCcCCCC
Q 010991 300 VERTKILQAFKCSRDLNTIFLSK---------------------------------ISSHAGSRRQEAQRLGRILRAKGK 346 (496)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~s~---------------------------------i~~~~~s~~~~~Qr~GR~~R~g~~ 346 (496)
.|...+...--.| .-++|++|. ....+-|..+-.||.||+||-.+
T Consensus 457 ~eQ~~VF~~pp~g-~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~- 534 (924)
T KOG0920|consen 457 EEQQAVFKRPPKG-TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP- 534 (924)
T ss_pred HHHHHhcCCCCCC-cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccC-
Confidence 9988886554444 233444333 11223477778999999999883
Q ss_pred ccccccCCCCceeEEEEEEEcCC
Q 010991 347 LEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 347 ~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
+..|.|.+..
T Consensus 535 -------------G~cy~L~~~~ 544 (924)
T KOG0920|consen 535 -------------GICYHLYTRS 544 (924)
T ss_pred -------------CeeEEeechh
Confidence 5677777653
No 150
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.99 E-value=2.2e-08 Score=97.21 Aligned_cols=211 Identities=15% Similarity=0.087 Sum_probs=132.4
Q ss_pred CCCCcHHHHHHHHHHH-------hcCCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 23 HAQPRPYQEKSLSKMF-------GNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~-------~~~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
...|-.-|.+++--+- -++.....+|-+.||.||.-+...++... +++.|+|..+..|...-.+.++..
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHh
Confidence 5578899999987542 23344567777899999999877766542 457999999999999888888775
Q ss_pred hCCCCCcEEEEcCCcc-ccccCCCcEEEEchHHhhccc----CCChhHHHHHHHHhcCCccEEEEcCCcccCchH-----
Q 010991 92 STIQDDQICRFTSDSK-ERFRGNAGVVVTTYNMVAFGG----KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----- 161 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~-~~~~~~~~IiItT~~~l~~~~----~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----- 161 (496)
. .....+..+..-.. +...-..+|+++||..|.... +.....+++.+|+....=++||+||||.+++..
T Consensus 115 G-~~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~ 193 (303)
T PF13872_consen 115 G-ADNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKK 193 (303)
T ss_pred C-CCcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCcc
Confidence 3 33333333222111 111234679999999998763 223345677788865556799999999998631
Q ss_pred -------HHHHHHhccCccEEEEeecCCCCccchhhh--hhhhCc---c----------------ccccCHHHHHhCCCC
Q 010991 162 -------FRKVISLTKSHCKLGLTATLVREDERITDL--NFLIGP---K----------------LYEANWLDLVKGGFI 213 (496)
Q Consensus 162 -------~~~~l~~l~~~~~L~LTATp~r~d~~~~~l--~~l~gp---~----------------~~~~~~~~l~~~g~l 213 (496)
...+-+.++..+++..|||...+.....-. ..+.|+ . ..+.--+++...|..
T Consensus 194 ~sk~g~avl~LQ~~LP~ARvvY~SATgasep~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~gGv~amE~vA~dlKa~G~y 273 (303)
T PF13872_consen 194 PSKTGIAVLELQNRLPNARVVYASATGASEPRNMAYMSRLGLWGPGTPFPDFDDFLEAMEKGGVGAMEMVAMDLKARGMY 273 (303)
T ss_pred ccHHHHHHHHHHHhCCCCcEEEecccccCCCceeeeeeeccccCCCCCCCCHHHHHHHHHhcCchHHHHHHHHHHhcchh
Confidence 122334577778999999987544331100 011221 1 112223333334432
Q ss_pred -------CcceEEEEEcCCCHHHHHHHH
Q 010991 214 -------ANVQCAEVWCPMTKEFFSEYL 234 (496)
Q Consensus 214 -------~~~~~~~v~~~~~~~~~~~yl 234 (496)
..+.+..+.+++++++.+-|-
T Consensus 274 iaR~LSf~gvef~~~e~~l~~~~~~~Yd 301 (303)
T PF13872_consen 274 IARQLSFEGVEFEIEEVPLTPEQIKMYD 301 (303)
T ss_pred eeeecccCCceEEEEEecCCHHHHHHhc
Confidence 245677788899998877663
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.95 E-value=1.9e-07 Score=103.54 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=85.8
Q ss_pred CCcHHHHHHHHHHHh----cCCCc-ceEEEeCCCCChHHHHHHHHHhcC-----CcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 25 QPRPYQEKSLSKMFG----NGRAR-SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~----~~~~~-~~il~~~tG~GKTl~~i~~~~~~~-----~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
.-+-+|-+|++.+.. ....+ -++-.+.||+|||+.=.-+++.+. -++.|-.-.++|--|.-+++++-.++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L 487 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNL 487 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCC
Confidence 446789999997643 11112 233347899999999544443331 14444445555555555555554444
Q ss_pred CCCcEEEEcCC-------------------------------------------cccc-----c--------cCCCcEEE
Q 010991 95 QDDQICRFTSD-------------------------------------------SKER-----F--------RGNAGVVV 118 (496)
Q Consensus 95 ~~~~v~~~~g~-------------------------------------------~~~~-----~--------~~~~~IiI 118 (496)
.+....++.|+ ..+. + .-.+.|+|
T Consensus 488 ~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V 567 (1110)
T TIGR02562 488 SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLV 567 (1110)
T ss_pred CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEE
Confidence 43333333322 1100 0 01267999
Q ss_pred EchHHhhccc--CCC-hhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc-----CccEEEEeecCC
Q 010991 119 TTYNMVAFGG--KRS-EESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-----SHCKLGLTATLV 182 (496)
Q Consensus 119 tT~~~l~~~~--~r~-~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~-----~~~~L~LTATp~ 182 (496)
+|.+.+.... .|. .....+.. -.-+.|||||+|-+-..++..+...+. ...+++||||.+
T Consensus 568 ~TIDQlL~a~~~~r~~~~~l~ll~----La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 568 CTIDHLIPATESHRGGHHIAPMLR----LMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred ecHHHHHHHhhhcccchhHHHHHH----hcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9998887653 221 11111122 234589999999998765543333322 347899999987
No 152
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.93 E-value=3.6e-08 Score=106.52 Aligned_cols=273 Identities=15% Similarity=0.126 Sum_probs=149.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT 120 (496)
--+|-+|||+|||-..+.++... ..++|+|...++|+.+....|... ++++. +.-...+....-....+-+++.
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~l~gF-v~Y~d~~~~~i~~~~~~rLivq 128 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-GLSGF-VNYLDSDDYIIDGRPYDRLIVQ 128 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-CCCcc-eeeeccccccccccccCeEEEE
Confidence 44667999999998877777664 469999999999999999999874 34432 2222222111111245678888
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH-------HHHh----c-cCccEEEEeecCCCCccch
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-------VISL----T-KSHCKLGLTATLVREDERI 188 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~-------~l~~----l-~~~~~L~LTATp~r~d~~~ 188 (496)
.++|..... ..+ .+|++|||||+-.+.+.-|.. +... + .+.++|.+-||.- +...
T Consensus 129 IdSL~R~~~---------~~l--~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln--~~tv 195 (824)
T PF02399_consen 129 IDSLHRLDG---------SLL--DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN--DQTV 195 (824)
T ss_pred ehhhhhccc---------ccc--cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC--HHHH
Confidence 888864411 122 469999999998766542221 2221 1 3568899999974 1111
Q ss_pred hhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhc-HH------------HHHHhhhhCCCcHHH
Q 010991 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN-SK------------KKQALYVMNPNKFRA 255 (496)
Q Consensus 189 ~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~-~~------------~~~~l~~~~~~K~~~ 255 (496)
.-+..+-|......-+.+....||..+ .|.-.. .+..+.....++... .. .....+. ......
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R-~~~~~~-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~tF 271 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNR-RCTFLR-SLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS--NDETTF 271 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccc-eEEEec-ccCcHHHHHHhCCcccccccCCCcCCCCccccccccc--cchhhH
Confidence 122222222222222222222333322 122111 122222222221000 00 0000001 112233
Q ss_pred HHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--------
Q 010991 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------- 322 (496)
Q Consensus 256 l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------- 322 (496)
...|+..+ ..|++|.|||.++..++.+++... +..++|..+..+ + +.| .+++|++-|+
T Consensus 272 ~~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W---~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 272 FSELLARL--NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW---KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred HHHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc---cceeEEEEeceEEEEecc
Confidence 44555555 479999999999998888887763 445666655542 2 223 3578998887
Q ss_pred -------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 -------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 -------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
...+..+.....|++||+=....
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc
Confidence 11222345567999999966663
No 153
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=5.2e-08 Score=105.97 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=81.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHH---HHHHHHHHhhCCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD---QWAFQFKLWSTIQD 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~---Qw~~e~~~~~~~~~ 96 (496)
...+++.|.-+.-.+. . +-|.-+.||=|||+++..++. ..++.|=||+.+--|+. +|...+-.|+|+
T Consensus 76 G~r~ydVQliGglvLh-~----G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGL-- 148 (925)
T PRK12903 76 GKRPYDVQIIGGIILD-L----GSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGL-- 148 (925)
T ss_pred CCCcCchHHHHHHHHh-c----CCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCC--
Confidence 3456666777766333 2 237789999999999766553 23567777777777765 488888888876
Q ss_pred CcEEEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 97 DQICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 97 ~~v~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.|++...+.... -.=.++|+.+|..-+..+.-|..-... .+..-.+.+.+.|+|||+.+.
T Consensus 149 -svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~-~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 -SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSS-KEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred -ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhccccc-HHHhcCcccceeeeccchhee
Confidence 466655542211 122488999997776655433321111 112223788899999999875
No 154
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.83 E-value=1.1e-07 Score=105.27 Aligned_cols=258 Identities=16% Similarity=0.157 Sum_probs=151.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc--CCcEEEEEeChHHHHH----HHHHHHHhhCCCCCcEEEEcCCcccc--ccCCCc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQ----WAFQFKLWSTIQDDQICRFTSDSKER--FRGNAG 115 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~--~~~~LIl~P~~~L~~Q----w~~e~~~~~~~~~~~v~~~~g~~~~~--~~~~~~ 115 (496)
++.++.+|+|+|||.+|-.++... ..+++.+.|.-+++.- |...|... .+..+...+|..... +....+
T Consensus 1160 d~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~---~G~~~~~l~ge~s~~lkl~~~~~ 1236 (1674)
T KOG0951|consen 1160 DNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL---LGLRIVKLTGETSLDLKLLQKGQ 1236 (1674)
T ss_pred ceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccc---cCceEEecCCccccchHHhhhcc
Confidence 689999999999999988777663 3589999998876543 66666553 344677777765422 335578
Q ss_pred EEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---------HHHHHHHhccCc-cEEEEeecCCCCc
Q 010991 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---------MFRKVISLTKSH-CKLGLTATLVRED 185 (496)
Q Consensus 116 IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---------~~~~~l~~l~~~-~~L~LTATp~r~d 185 (496)
|+|+|++..... ..+ +..++.|.||.|.+.+. +.+.+...+..+ +..+||-......
T Consensus 1237 vii~tpe~~d~l-----------q~i--Q~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~ 1303 (1674)
T KOG0951|consen 1237 VIISTPEQWDLL-----------QSI--QQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANAR 1303 (1674)
T ss_pred eEEechhHHHHH-----------hhh--hhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccch
Confidence 999999877533 122 67889999999999842 334444555444 4566766554322
Q ss_pred cchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhh
Q 010991 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265 (496)
Q Consensus 186 ~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~ 265 (496)
+.+ ..-...+|...+.. -..|.....-.+..+ .+-...+ +|..- ....+. .|.
T Consensus 1304 d~i----g~s~~~v~Nf~p~~-----R~~Pl~i~i~~~~~~-~~~~~~~------------am~~~---~~~ai~-~~a- 1356 (1674)
T KOG0951|consen 1304 DLI----GASSSGVFNFSPSV-----RPVPLEIHIQSVDIS-HFESRML------------AMTKP---TYTAIV-RHA- 1356 (1674)
T ss_pred hhc----cccccceeecCccc-----CCCceeEEEEEeccc-hhHHHHH------------Hhhhh---HHHHHH-HHh-
Confidence 221 00001122111100 011111111111111 1111111 11110 112222 222
Q ss_pred cCCCeEEEEeccHHHHHHHHHHcC---------------------------CCeEEcCCCHHHHHHHHHHHhcCCCccEE
Q 010991 266 QRGDKIIVFADNLFALTEYAMKLR---------------------------KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (496)
Q Consensus 266 ~~g~kiIVF~~~~~~~~~l~~~L~---------------------------~~~i~G~~~~~eR~~il~~F~~~~~~~vl 318 (496)
..++..+||..++.++..++..|- ..+=|-+++..+..-+-+-|..| .+.++
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g-~i~v~ 1435 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG-AIQVC 1435 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC-cEEEE
Confidence 467889999999998888776551 11126677777777777888888 89999
Q ss_pred EEee------------------cc------CCCCChhHHHHHccCcCcCCC
Q 010991 319 FLSK------------------IS------SHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 319 v~s~------------------i~------~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
|.+. .. -..-+.....|++|+++|+|+
T Consensus 1436 v~s~~~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~k 1486 (1674)
T KOG0951|consen 1436 VMSRDCYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAGK 1486 (1674)
T ss_pred EEEcccccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCCcc
Confidence 9887 00 111245668999999999883
No 155
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=98.82 E-value=4.3e-09 Score=116.42 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=100.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---------------------CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---------------------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---------------------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~ 102 (496)
..++.+..+|+|||...+...... .+.+|||||.. +..||..|+.+.+. +..+|..|
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~-~~lKv~~Y 452 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHIS-SLLKVLLY 452 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhcc-ccceEEEE
Confidence 367899999999998865544211 13599999976 78999999999643 22477777
Q ss_pred cCCccccc-----cCCCcEEEEchHHhhcccCCC--hhHHHHHHH----------HhcCCccEEEEcCCcccCch--HHH
Q 010991 103 TSDSKERF-----RGNAGVVVTTYNMVAFGGKRS--EESEKIIEE----------IRNREWGLLLMDEVHVVPAH--MFR 163 (496)
Q Consensus 103 ~g~~~~~~-----~~~~~IiItT~~~l~~~~~r~--~~~~~~~~~----------l~~~~~~~vIlDEaH~~~~~--~~~ 163 (496)
-|-.+-.. -.+++||+|||+.|++..-.. ....+.+.. |..-.|--|++|||+.+.+. .-.
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a 532 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAA 532 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHH
Confidence 77544211 246899999999998764322 111111110 11134557999999999864 456
Q ss_pred HHHHhccCccEEEEeecCCCCccchhhhhhhh
Q 010991 164 KVISLTKSHCKLGLTATLVREDERITDLNFLI 195 (496)
Q Consensus 164 ~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~ 195 (496)
+.+..+.+.++.+.||||++.-+....|..++
T Consensus 533 ~M~~rL~~in~W~VTGTPiq~Iddl~~Ll~fL 564 (1394)
T KOG0298|consen 533 EMVRRLHAINRWCVTGTPIQKIDDLFPLLEFL 564 (1394)
T ss_pred HHHHHhhhhceeeecCCchhhhhhhHHHHHHh
Confidence 67778889999999999998733333333333
No 156
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.79 E-value=3.2e-08 Score=110.93 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=51.9
Q ss_pred CCCCCcHHHHH---HHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc--CCcEEEEEeChHHHHHH-HHHHHH
Q 010991 22 PHAQPRPYQEK---SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQW-AFQFKL 90 (496)
Q Consensus 22 ~~~~lr~yQ~~---al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~--~~~~LIl~P~~~L~~Qw-~~e~~~ 90 (496)
+.++.||-|.+ ++...+.++ ...++.++||+|||+..+.++... +.+++|++||++|.+|. .+.+..
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~--~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDG--PASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCC--CcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 46899999999 444455554 477888999999999976665443 57999999999999998 344444
No 157
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.74 E-value=1e-07 Score=94.34 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=51.0
Q ss_pred CCCCCcHHHHHHHHHH---HhcCCCcceEEEeCCCCChHHHHHHHHH----hcCC-----cEEEEEeChHHHHHHHHHHH
Q 010991 22 PHAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKK-----SCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~~~----~~~~-----~~LIl~P~~~L~~Qw~~e~~ 89 (496)
+.+++||.|.+-+..+ +..+ +.+++.+|||+|||+..+.++. ..+. +++|.++|..+.+|-..+++
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 4556799999966654 4444 5899999999999999776653 2233 79999999998888777776
Q ss_pred Hh
Q 010991 90 LW 91 (496)
Q Consensus 90 ~~ 91 (496)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 54
No 158
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.74 E-value=1e-07 Score=94.34 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=51.0
Q ss_pred CCCCCcHHHHHHHHHH---HhcCCCcceEEEeCCCCChHHHHHHHHH----hcCC-----cEEEEEeChHHHHHHHHHHH
Q 010991 22 PHAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKK-----SCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~~~----~~~~-----~~LIl~P~~~L~~Qw~~e~~ 89 (496)
+.+++||.|.+-+..+ +..+ +.+++.+|||+|||+..+.++. ..+. +++|.++|..+.+|-..+++
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 4556799999966654 4444 5899999999999999776653 2233 79999999998888777776
Q ss_pred Hh
Q 010991 90 LW 91 (496)
Q Consensus 90 ~~ 91 (496)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 54
No 159
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.71 E-value=6.1e-08 Score=104.45 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHHHHH---hcCCCcceEEEeCCCCChHHHHHHHHHh-----cCCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 30 Q~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~~~~-----~~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
|.+.+.++. .++ ...++.++||+|||+..+.++.. .++++||++||++|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~--~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQK--RIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 555555543 333 47888899999999997766533 35799999999999999998877654
No 160
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.67 E-value=3.2e-07 Score=92.70 Aligned_cols=211 Identities=17% Similarity=0.163 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH----HhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEE
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~----~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~ 102 (496)
+.++.+-+. .+.++ .-.+++++||+|||-+.=.++ .....-+..--|.++.+.+.......=.. ..++.-
T Consensus 49 w~~k~~F~~-~l~~n--Q~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMD---v~lG~E 122 (699)
T KOG0925|consen 49 WEQKEEFLK-LLLNN--QIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMD---VTLGEE 122 (699)
T ss_pred HHhHHHHHH-HHhcC--ceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhc---cccchh
Confidence 344444343 55554 378899999999998742222 22233344444777777766655554211 122111
Q ss_pred cCC-cc-cccc-CCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC--chHH----HHHHHhccCcc
Q 010991 103 TSD-SK-ERFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP--AHMF----RKVISLTKSHC 173 (496)
Q Consensus 103 ~g~-~~-~~~~-~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~--~~~~----~~~l~~l~~~~ 173 (496)
.|- .. +.-. ...-.-.+|-+||.. ..|..=.-..|+++|+||||.=. .... ..++..-+.-.
T Consensus 123 VGysIrfEdC~~~~T~Lky~tDgmLlr---------Eams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk 193 (699)
T KOG0925|consen 123 VGYSIRFEDCTSPNTLLKYCTDGMLLR---------EAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLK 193 (699)
T ss_pred ccccccccccCChhHHHHHhcchHHHH---------HHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCce
Confidence 111 00 0000 011122345555532 12221112689999999999643 2222 22333223347
Q ss_pred EEEEeecCCCCccchhhhhhhhCcc-ccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCc
Q 010991 174 KLGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (496)
Q Consensus 174 ~L~LTATp~r~d~~~~~l~~l~gp~-~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K 252 (496)
.+.+|||.. ...+..++|.. +... .| .-|+.. + .+++..+.|++
T Consensus 194 ~vvmSatl~-----a~Kfq~yf~n~Pll~v-------pg-~~PvEi--~---Yt~e~erDylE----------------- 238 (699)
T KOG0925|consen 194 LVVMSATLD-----AEKFQRYFGNAPLLAV-------PG-THPVEI--F---YTPEPERDYLE----------------- 238 (699)
T ss_pred EEEeecccc-----hHHHHHHhCCCCeeec-------CC-CCceEE--E---ecCCCChhHHH-----------------
Confidence 788999974 33455555522 2111 22 222221 2 22344455552
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc
Q 010991 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288 (496)
Q Consensus 253 ~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L 288 (496)
.+|..+++.|......-++||-...+.++..++.+
T Consensus 239 -aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i 273 (699)
T KOG0925|consen 239 -AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKI 273 (699)
T ss_pred -HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHH
Confidence 45666666664334456999999888877777665
No 161
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.67 E-value=6.4e-07 Score=98.10 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=83.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHH---HHHHHHHhhCCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ---WAFQFKLWSTIQD 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Q---w~~e~~~~~~~~~ 96 (496)
...+++-|.-+.-.+. . +-|.-+.||-|||+++..++. ..++.|-||+++..|+.+ |...+-+|+|+
T Consensus 74 G~r~ydvQlig~l~L~-~----G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL-- 146 (870)
T CHL00122 74 GLRHFDVQLIGGLVLN-D----GKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL-- 146 (870)
T ss_pred CCCCCchHhhhhHhhc-C----CccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCC--
Confidence 4456677777765332 2 447889999999999766553 247789999999999886 77777777765
Q ss_pred CcEEEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 97 DQICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 97 ~~v~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.++++.++.... -.=.++|+.+|-..+..+.-|..-....-+.+ .+.+.++|+|||+.+.
T Consensus 147 -svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v-~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 -TVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVV-QRPFNYCIIDEVDSIL 209 (870)
T ss_pred -ceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhh-ccccceeeeecchhhe
Confidence 566665553321 11247899999776665544432111111222 3778899999999875
No 162
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.63 E-value=3.1e-08 Score=77.76 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=49.5
Q ss_pred CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCC
Q 010991 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 290 ~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g 344 (496)
+..+||+++..+|..+++.|+++ ..++||+|. +++.++|+.+|.|++||++|.|
T Consensus 10 ~~~i~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 10 VAIIHGDMSQKERQEILKKFNSG-EIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp EEEESTTSHHHHHHHHHHHHHTT-SSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred EEEEECCCCHHHHHHHHHHhhcc-CceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 56799999999999999999998 889999988 4677899999999999999986
No 163
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.53 E-value=1e-06 Score=83.83 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhc-----------CCcEEEEEeChHHHHHHHHHHHH
Q 010991 25 QPRPYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRI-----------KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~-----------~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
+|.+.|.+|+..++... . .+|.+|+|+|||-+...++..+ ++++||++|+...+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~---~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSN---GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSS---E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCC---CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999999888775 5 8999999999997654444333 45899999999999999888887
No 164
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.51 E-value=5.5e-06 Score=90.88 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=84.9
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHH---HHHHHHHhhCCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQ---WAFQFKLWSTIQD 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Q---w~~e~~~~~~~~~ 96 (496)
...+++.|.-+--.+.. +-|.-+.||-|||+++..++.. .++.|-||+++--|+.. |...+-+|+|+
T Consensus 83 G~r~ydVQliGgl~Lh~-----G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL-- 155 (939)
T PRK12902 83 GMRHFDVQLIGGMVLHE-----GQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGL-- 155 (939)
T ss_pred CCCcchhHHHhhhhhcC-----CceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC--
Confidence 34556667766553332 3488899999999997665543 46789999999988875 88888888775
Q ss_pred CcEEEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 97 DQICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 97 ~~v~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.|++..++.... ..-.++|+.+|...+.++.-|.+-....-+.+ .+.+.++|+|||+.+.
T Consensus 156 -tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~v-qR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 -SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVV-QRPFNYCVIDEVDSIL 218 (939)
T ss_pred -eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccc-cCccceEEEeccccee
Confidence 577765543221 12358899999888766644432111111112 3788899999999875
No 165
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.50 E-value=8.6e-07 Score=101.15 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=49.6
Q ss_pred CCCCCcHHHHHHHHH---HHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHH
Q 010991 22 PHAQPRPYQEKSLSK---MFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAF 86 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~---~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~ 86 (496)
+.++.||-|.+-... .+..+ ...+|-+|||+|||+..+.++.. .+++++|-++|..|.+|...
T Consensus 254 ~~~e~R~~Q~~m~~~v~~~l~~~--~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 254 PKYEKREGQQEMMKEVYTALRDS--EHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHH
Confidence 568999999995554 45554 47888999999999997666542 46799999999999999644
No 166
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.37 E-value=2.1e-06 Score=88.24 Aligned_cols=310 Identities=14% Similarity=0.023 Sum_probs=175.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhh-CCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWS-TIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~-~~~~~~ 98 (496)
..+.+|.+++..+-.+ ++.++.-.+-+||.++.-..+..+ ....+++.|+.+++.+..+.+.-.. .++..+
T Consensus 286 ~~~~~~~~~~~~~~~G---~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K 362 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEG---RADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARK 362 (1034)
T ss_pred chhhhhHHHHhhhhhc---ccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhh
Confidence 4577899998865544 377888999999998743332221 2367888888887765444433211 122222
Q ss_pred ---EEEEcCCccc----cccCCCcEEEEchHHhhcccC-CChhHHHHHHHHhcCCccEEEEcCCcccCch-------HHH
Q 010991 99 ---ICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGK-RSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------MFR 163 (496)
Q Consensus 99 ---v~~~~g~~~~----~~~~~~~IiItT~~~l~~~~~-r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-------~~~ 163 (496)
|..+.+.... ..+.+..++.+.++++....- .+.. +...+ .+..+++.||+|.++.+ ..+
T Consensus 363 ~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~---~~~~~--~~~~~~~~~~~~~Y~~~~~~~~~~~~R 437 (1034)
T KOG4150|consen 363 SAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLC---YNVPV--FEELCKDTNSCALYLFPTKALAQDQLR 437 (1034)
T ss_pred cceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccc---cccHH--HHHHHhcccceeeeecchhhHHHHHHH
Confidence 2223333211 123567899999988764411 0000 00000 12247899999998853 344
Q ss_pred HHHHhccC---c---cEEEEeecCCCCccchhhhhhhhCccccccCHHHHH-hCCCCCcceEEEEEcCCCHHHHHHHHhh
Q 010991 164 KVISLTKS---H---CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLV-KGGFIANVQCAEVWCPMTKEFFSEYLKK 236 (496)
Q Consensus 164 ~~l~~l~~---~---~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~-~~g~l~~~~~~~v~~~~~~~~~~~yl~~ 236 (496)
+++..++. . ..+--++|..-......++ +|- +-.+++ ..|--.......+|-|..+...+
T Consensus 438 ~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~---~~~-----~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~----- 504 (1034)
T KOG4150|consen 438 ALSDLIKGFEASINMGVYDGDTPYKDRTRLRSEL---ANL-----SELELVTIDGSPSSEKLFVLWNPSAPPTSK----- 504 (1034)
T ss_pred HHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHh---cCC-----cceEEEEecCCCCccceEEEeCCCCCCcch-----
Confidence 44433321 1 2333344432111111122 111 001111 13333344456677664322111
Q ss_pred hcHHHHHHhhhhCCCcH----HHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------------CCeEEcCCCH
Q 010991 237 ENSKKKQALYVMNPNKF----RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------------KPMIYGATSH 299 (496)
Q Consensus 237 ~~~~~~~~l~~~~~~K~----~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------------~~~i~G~~~~ 299 (496)
+++ .+|. .++..++ ..|-++|-||..+..++.+...-+ +.-+.|+-+.
T Consensus 505 ---~~~-------~~~i~E~s~~~~~~i-----~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A 569 (1034)
T KOG4150|consen 505 ---SEK-------SSKVVEVSHLFAEMV-----QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIA 569 (1034)
T ss_pred ---hhh-------hhHHHHHHHHHHHHH-----HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccch
Confidence 000 0111 1233333 468899999999998887765442 3457899999
Q ss_pred HHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEE
Q 010991 300 VERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 364 (496)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~ 364 (496)
++|..|....-.| ++..+|+|. ....+.|...+.|..||+||.... .....
T Consensus 570 ~DRRKIE~~~F~G-~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-------------SLavy 635 (1034)
T KOG4150|consen 570 EDRRKIESDLFGG-KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-------------SLAVY 635 (1034)
T ss_pred hhHHHHHHHhhCC-eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-------------ceEEE
Confidence 9999998888787 889999888 345667999999999999997742 23333
Q ss_pred EEcCCChHHHHHHHHHHHHH
Q 010991 365 LVSTDTQEMFYSTKRQQFLI 384 (496)
Q Consensus 365 lvs~~t~e~~~~~~r~~~l~ 384 (496)
++....++.+|..+....+.
T Consensus 636 va~~~PVDQ~Y~~HP~~l~~ 655 (1034)
T KOG4150|consen 636 VAFLGPVDQYYMSHPDKLFG 655 (1034)
T ss_pred EEeccchhhHhhcCcHHHhC
Confidence 55667888888776655553
No 167
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.37 E-value=7.3e-07 Score=69.93 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=47.3
Q ss_pred CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCC
Q 010991 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 290 ~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g 344 (496)
+..+||+++.++|..+++.|+++ ...+++.|. +...++++.++.|++||++|.|
T Consensus 14 ~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 14 VARLHGGLSQEEREEILEKFNNG-KIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 56799999999999999999997 777777766 4567889999999999999976
No 168
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.34 E-value=1.7e-06 Score=80.51 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=73.1
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHH--------HHHHHHHhh
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQ--------WAFQFKLWS 92 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Q--------w~~e~~~~~ 92 (496)
..+.|..+++.++... -.++.+|.|+|||+.+++.+... ..+++|+-|.... .+ ..+.+.-|.
T Consensus 5 ~~~~Q~~~~~al~~~~---~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~-~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALLNND---LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA-GEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHHH-S---EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T-T----SS---------TTT
T ss_pred CCHHHHHHHHHHHhCC---eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-ccccccCCCCHHHHHHHHH
Confidence 4578999999888554 78888999999999998887653 2467777776542 11 111111111
Q ss_pred CCCCC-cEEE-EcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc
Q 010991 93 TIQDD-QICR-FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (496)
Q Consensus 93 ~~~~~-~v~~-~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~ 170 (496)
. |-. .... +....-+.+.....|-+.+...++-. + -+..+||+|||+.+.....+.++.++.
T Consensus 81 ~-p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGr---t------------~~~~~iIvDEaQN~t~~~~k~ilTR~g 144 (205)
T PF02562_consen 81 R-PIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGR---T------------FDNAFIIVDEAQNLTPEELKMILTRIG 144 (205)
T ss_dssp H-HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-----------------B-SEEEEE-SGGG--HHHHHHHHTTB-
T ss_pred H-HHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCc---c------------ccceEEEEecccCCCHHHHHHHHcccC
Confidence 0 000 0000 00000011122345667666655421 0 244799999999999999999999999
Q ss_pred CccEEEEeecCCCCccc
Q 010991 171 SHCKLGLTATLVREDER 187 (496)
Q Consensus 171 ~~~~L~LTATp~r~d~~ 187 (496)
..+++.++|-|.+-|..
T Consensus 145 ~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 145 EGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TT-EEEEEE--------
T ss_pred CCcEEEEecCceeecCC
Confidence 99999999998765543
No 169
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.30 E-value=1.3e-05 Score=74.87 Aligned_cols=127 Identities=18% Similarity=0.251 Sum_probs=77.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH---HhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEE
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~---~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (496)
+|-+-|.+++..++.++. +-.+|.++.|+|||.+...++ ...+.++++++||...+....+. .+++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~----~~~~------ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK----TGIE------ 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH----HTS-------
T ss_pred CCCHHHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh----hCcc------
Confidence 467899999999887642 357778999999998754433 33467999999999877654444 2222
Q ss_pred EcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccC-ccEEEEeec
Q 010991 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKLGLTAT 180 (496)
Q Consensus 102 ~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~-~~~L~LTAT 180 (496)
..|...+............ .. ....+++|||||-.+....+..++..+.. ..++.|.|-
T Consensus 70 ----------------a~Ti~~~l~~~~~~~~~~~--~~--~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 70 ----------------AQTIHSFLYRIPNGDDEGR--PE--LPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp ----------------EEEHHHHTTEECCEECCSS--CC---TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-
T ss_pred ----------------hhhHHHHHhcCCccccccc--cc--CCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECC
Confidence 1122222111110000000 00 14567999999999999999989988876 678889888
Q ss_pred CC
Q 010991 181 LV 182 (496)
Q Consensus 181 p~ 182 (496)
|.
T Consensus 130 ~~ 131 (196)
T PF13604_consen 130 PN 131 (196)
T ss_dssp TT
T ss_pred cc
Confidence 75
No 170
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.29 E-value=3.7e-06 Score=93.12 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=48.4
Q ss_pred CCCCCcHHHHHHHHHH---HhcC---CCcceEEEeCCCCChHHHHHHHHH----hcCCcEEEEEeChHHHHHHH
Q 010991 22 PHAQPRPYQEKSLSKM---FGNG---RARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWA 85 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~---~~~~---~~~~~il~~~tG~GKTl~~i~~~~----~~~~~~LIl~P~~~L~~Qw~ 85 (496)
+.++.||-|.+-...+ +... ..+..+|-+|||+|||+..+.++. ..+++++|=+.|..|-+|..
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4689999999966554 4442 124678889999999999666543 35788999999999988853
No 171
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.24 E-value=3.8e-06 Score=91.75 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=86.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc---------ccC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRG 112 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~---------~~~ 112 (496)
+.++.+.+|+|||.+.+.++.. .++.+|||+|...|..|+.+.|+..++ ...|.+++++.... ..+
T Consensus 162 ~~i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 162 RAVWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 3444444699999998887754 477899999999999999999999864 34688898875532 246
Q ss_pred CCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-----hH--HHHHH---HhccCccEEEEeecCC
Q 010991 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-----HM--FRKVI---SLTKSHCKLGLTATLV 182 (496)
Q Consensus 113 ~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-----~~--~~~~l---~~l~~~~~L~LTATp~ 182 (496)
...|+|+|.+.+..- -.+.++||+||=|.-.- +. -+.+. ........|+-||||.
T Consensus 240 ~~~IViGtRSAvFaP---------------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 240 QARVVVGTRSAVFAP---------------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CCcEEEEcceeEEec---------------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 788999999766322 26889999999996541 11 12222 1222335566799996
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.20 E-value=3.1e-06 Score=82.00 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=75.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHH---HHHHHHHhhCCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQ---WAFQFKLWSTIQD 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Q---w~~e~~~~~~~~~ 96 (496)
...+++-|.-+.-.+. . +-|+.+.||=|||+++..++.. .+++|=||+.+..|+.. |...|-+++|+
T Consensus 75 g~~p~~vQll~~l~L~-~----G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl-- 147 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH-K----GRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGL-- 147 (266)
T ss_dssp S----HHHHHHHHHHH-T----TSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT---
T ss_pred CCcccHHHHhhhhhcc-c----ceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhh--
Confidence 4567788888887543 3 2389999999999996555432 36788899999989876 55555555554
Q ss_pred CcEEEEcCCccccc---cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 97 DQICRFTSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 97 ~~v~~~~g~~~~~~---~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.++...++....- .-.++|+.+|...+..+.-|..-....... ..+.+.++|+|||+.+.
T Consensus 148 -sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~-~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 -SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQ-VQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG---SSSSSEEEECTHHHHT
T ss_pred -ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchh-ccCCCCEEEEeccceEE
Confidence 6777666543210 113679999987776531111000000011 13688999999999765
No 173
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.18 E-value=4.3e-05 Score=85.00 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHH---HHHHHHHHhhCCC
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD---QWAFQFKLWSTIQ 95 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~---Qw~~e~~~~~~~~ 95 (496)
+...+++.|.-+--.+.. +-|.-+.||=|||+++..++.. .++.|-||+.+--|+. +|...+-.|+|+
T Consensus 166 W~m~~yDVQliGgivLh~-----G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGL- 239 (1112)
T PRK12901 166 WDMVHYDVQLIGGVVLHQ-----GKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGL- 239 (1112)
T ss_pred CCCcccchHHhhhhhhcC-----CceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCC-
Confidence 344556667665553332 3488899999999997665543 3667777777666665 599999998876
Q ss_pred CCcEEEEcC-C--cccc-ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 96 DDQICRFTS-D--SKER-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 96 ~~~v~~~~g-~--~~~~-~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.|+++.. + ..++ -.=.++|+.+|-.-+.++.-|.+-....-+.+ .+.+.+.|+||++.+.
T Consensus 240 --svg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~v-qR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 240 --SVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLV-QRKHNYAIVDEVDSVL 303 (1112)
T ss_pred --ceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhh-CcCCceeEeechhhhh
Confidence 4666543 2 1111 12357899999777766655543222222333 3778899999999874
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.11 E-value=1.2e-05 Score=86.67 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=95.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC-----CcEEEEEeChHHHHH-------HHHHH-HHhhCCCCCcEEEEcCC-cccc-
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQ-------WAFQF-KLWSTIQDDQICRFTSD-SKER- 109 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~-----~~~LIl~P~~~L~~Q-------w~~e~-~~~~~~~~~~v~~~~g~-~~~~- 109 (496)
++=|-|+||+|||.+.+-.+..+. -+++|||||.++.+- ..+.| .....-.....+++..+ .+..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~~ 155 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFKF 155 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHhh
Confidence 566789999999999887776553 289999999987654 22333 22111111223333222 1111
Q ss_pred -ccCCCcEEEEchHHhhcc---cCCCh-----------hHHHHHHHHhcCCccEEEEcCCcccCc-hHHHHHHHhccCcc
Q 010991 110 -FRGNAGVVVTTYNMVAFG---GKRSE-----------ESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRKVISLTKSHC 173 (496)
Q Consensus 110 -~~~~~~IiItT~~~l~~~---~~r~~-----------~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~~l~~l~~~~ 173 (496)
-.+.+.|++.|.+.+... ....+ .....++.+...++ .||+||-|++.+ ..+-..+..+.+.+
T Consensus 156 ~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rP-IvIvDEPh~f~~~~k~~~~i~~l~pl~ 234 (985)
T COG3587 156 KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRP-IVIVDEPHRFLGDDKTYGAIKQLNPLL 234 (985)
T ss_pred ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCC-EEEecChhhcccchHHHHHHHhhCceE
Confidence 134567778777766544 11110 01223344433333 899999999998 34444778899999
Q ss_pred EEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEE
Q 010991 174 KLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA 219 (496)
Q Consensus 174 ~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~ 219 (496)
.|-++||-...-.. .+|+.+..++..++.+..+.+.
T Consensus 235 ilRfgATfkd~y~~----------l~yrLDsi~Af~~~LVK~I~v~ 270 (985)
T COG3587 235 ILRFGATFKDEYNN----------LVYRLDSIDAFNQKLVKQIRVF 270 (985)
T ss_pred EEEecccchhhhcC----------eeEEeeHHhhhhhhhhhheeee
Confidence 99999997643321 2445555555544444444433
No 175
>PRK10536 hypothetical protein; Provisional
Probab=98.03 E-value=9e-06 Score=77.89 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=85.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-CC---cEEEEEeChHHHH-------HHHH
Q 010991 19 ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-KK---SCLCLATNAVSVD-------QWAF 86 (496)
Q Consensus 19 ~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-~~---~~LIl~P~~~L~~-------Qw~~ 86 (496)
+..+-......|...+.++..+ ..+++.+|+|+|||..+++++.. + .+ +++|.=|+....+ ...+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 3333344567788888866554 37888899999999998888764 2 22 3344334332111 0122
Q ss_pred HHHHhhCCCCCcEEEEcCCc-cc-cc-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH
Q 010991 87 QFKLWSTIQDDQICRFTSDS-KE-RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163 (496)
Q Consensus 87 e~~~~~~~~~~~v~~~~g~~-~~-~~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~ 163 (496)
.+.-|...--.....+.+.. -+ .+ .....|-|.....++.. . -+-++||+|||+.+......
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr---t------------l~~~~vIvDEaqn~~~~~~k 194 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR---T------------FENAVVILDEAQNVTAAQMK 194 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC---c------------ccCCEEEEechhcCCHHHHH
Confidence 22222100000000000110 01 01 11234666655544321 0 23379999999999998888
Q ss_pred HHHHhccCccEEEEeecCCCCcc
Q 010991 164 KVISLTKSHCKLGLTATLVREDE 186 (496)
Q Consensus 164 ~~l~~l~~~~~L~LTATp~r~d~ 186 (496)
.++..+....++.++|-|.+-|.
T Consensus 195 ~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 195 MFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHHhhcCCCCEEEEeCChhhccC
Confidence 89999999999999999876554
No 176
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.02 E-value=1.6e-05 Score=83.33 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHH
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
+|..-|..|+..++.+. -.+|.+|+|+|||.+..+++.+ ...++||++|+...++|..+.+.+
T Consensus 410 kLN~SQ~~AV~~VL~rp---lsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhchHHHHHHHHHHcCC---ceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 68889999999999875 6799999999999997776654 467999999999999999999887
No 177
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.99 E-value=4.7e-05 Score=65.66 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=62.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc--------CCcEEEEE-eChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLA-TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~--------~~~~LIl~-P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~ 114 (496)
+.++|.+|+|+|||.++-.++... ..+++.+. |...-...+..++...++.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------------- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------------
Confidence 478899999999999987777664 33444333 33222344555555544433211
Q ss_pred cEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCccc-CchHHHHHHHhc-cCccEEEEeecCC
Q 010991 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV-PAHMFRKVISLT-KSHCKLGLTATLV 182 (496)
Q Consensus 115 ~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~-~~~~~~~~l~~l-~~~~~L~LTATp~ 182 (496)
-.+...+ ...+.+.+......+|||||+|++ ....+..+.... .....+.|+|||.
T Consensus 69 ---~~~~~~l---------~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ---RQTSDEL---------RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ---TS-HHHH---------HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ---cCCHHHH---------HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 0111222 123345555555579999999998 655555443332 3457799999993
No 178
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.95 E-value=4.2e-05 Score=71.96 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=91.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---CC-cEEEEEeChHHHHHHHHHHHHhh-
Q 010991 18 MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KK-SCLCLATNAVSVDQWAFQFKLWS- 92 (496)
Q Consensus 18 ~~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~-~~LIl~P~~~L~~Qw~~e~~~~~- 92 (496)
+++..++.+||-|.+...++.+...+.+.+..+-||.|||-+.+.+++.. +. =+.++|| ++|..|..+-+...+
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLG 94 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 55667889999999999999876445688999999999999977765542 33 3566777 458999888887644
Q ss_pred CCCCCcEEEEcCCcccc---------------ccCCCcEEEEchHHhhccc---------CCC---hhHHHHHHHHhcCC
Q 010991 93 TIQDDQICRFTSDSKER---------------FRGNAGVVVTTYNMVAFGG---------KRS---EESEKIIEEIRNRE 145 (496)
Q Consensus 93 ~~~~~~v~~~~g~~~~~---------------~~~~~~IiItT~~~l~~~~---------~r~---~~~~~~~~~l~~~~ 145 (496)
++-+..|..+.-+.... ......|+++||+.+.+.. ... ....+...++ .+
T Consensus 95 ~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l--~~ 172 (229)
T PF12340_consen 95 GLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWL--DE 172 (229)
T ss_pred HHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--Hh
Confidence 33344454433222110 1245679999999776541 011 1112222344 23
Q ss_pred ccEEEEcCCcccCchHHH
Q 010991 146 WGLLLMDEVHVVPAHMFR 163 (496)
Q Consensus 146 ~~~vIlDEaH~~~~~~~~ 163 (496)
-..-|+||+|...+..|+
T Consensus 173 ~~rdilDEsDe~L~~k~q 190 (229)
T PF12340_consen 173 HSRDILDESDEILSVKYQ 190 (229)
T ss_pred cCCeEeECchhccCcceE
Confidence 345699999987665444
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.94 E-value=3.6e-05 Score=80.43 Aligned_cols=66 Identities=26% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHH
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
.+..|-+-|..|+.....+. .-.+|.+|+|+|||.+...++.. .++++||.+||.+.+++..+.+.
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k--~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNK--DLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CCccccHHHHHHHHHHhccC--CceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 35678899999999776664 47889999999999987666654 47899999999999999988654
No 180
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.89 E-value=4.7e-05 Score=77.72 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=60.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiIt 119 (496)
-.+|.+.+|+|||++++.++..+ +..++++|++..|....+..+..-. .+ . .....+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-~~---------~-------~~~~~~~ 65 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY-NP---------K-------LKKSDFR 65 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc-cc---------c-------hhhhhhh
Confidence 46788999999999999998876 4589999999999888777876532 00 0 0112233
Q ss_pred chHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc
Q 010991 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (496)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (496)
.+..+.+... ........+++||+||||++..
T Consensus 66 ~~~~~i~~~~--------~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 66 KPTSFINNYS--------ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhHHHHhhcc--------cccccCCcCCEEEEehhHhhhh
Confidence 3333322211 0011136899999999999987
No 181
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.84 E-value=0.00035 Score=77.72 Aligned_cols=129 Identities=13% Similarity=0.107 Sum_probs=83.9
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH---HhcC--CcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~---~~~~--~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
..+.|.+-|.+|+..+..++ -.+|.+++|+|||.+.-.++ ...+ .++++++||...+.. +..-++.+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~---~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~----L~e~~g~~a 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHK---VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR----LGEVTGLTA 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHH----HHHhcCCcc
Confidence 45789999999999887654 78999999999998754333 3344 578889999875553 333223222
Q ss_pred CcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEE
Q 010991 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176 (496)
Q Consensus 97 ~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~ 176 (496)
. |...+........ .....+. ....++||+|||+.+....+..++..++...+|.
T Consensus 393 ~----------------------Tih~lL~~~~~~~-~~~~~~~--~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 393 S----------------------TIHRLLGYGPDTF-RHNHLED--PIDCDLLIVDESSMMDTWLALSLLAALPDHARLL 447 (720)
T ss_pred c----------------------cHHHHhhccCCcc-chhhhhc--cccCCEEEEeccccCCHHHHHHHHHhCCCCCEEE
Confidence 1 2111111100000 0000000 1467899999999999998888999888888888
Q ss_pred EeecCC
Q 010991 177 LTATLV 182 (496)
Q Consensus 177 LTATp~ 182 (496)
|-|=|.
T Consensus 448 lvGD~~ 453 (720)
T TIGR01448 448 LVGDTD 453 (720)
T ss_pred EECccc
Confidence 888654
No 182
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.82 E-value=7.3e-05 Score=77.87 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=99.0
Q ss_pred EEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHH-----hh-----CCCCCcEEEEcCCccccccCC
Q 010991 48 IVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKL-----WS-----TIQDDQICRFTSDSKERFRGN 113 (496)
Q Consensus 48 l~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~-----~~-----~~~~~~v~~~~g~~~~~~~~~ 113 (496)
..++||+|||++...++... .+..|+.|....+++.....|.. |+ .+.+..+-+-.-..-......
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 35799999999977777654 34799999988877765555432 11 111111111000000113455
Q ss_pred CcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-------------HHHHHHHh-c---cCccEEE
Q 010991 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------------MFRKVISL-T---KSHCKLG 176 (496)
Q Consensus 114 ~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-------------~~~~~l~~-l---~~~~~L~ 176 (496)
..|++||.+.|..+.-|..+-.--++.+...+. +++-|||||+.+. .|..++.. + +....|.
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~kl-vfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKL-VFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCce-EEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 779999999998776555443333455544444 7889999999752 34433322 2 2235677
Q ss_pred EeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcc
Q 010991 177 LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANV 216 (496)
Q Consensus 177 LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~ 216 (496)
+|||-..+... ...+-..+++.+++.+..+.||-.+.
T Consensus 161 f~at~~k~k~v---~~ky~dkiv~~y~lk~f~e~gytk~i 197 (812)
T COG3421 161 FSATIPKEKSV---EDKYEDKIVVTYTLKQFSEDGYTKNI 197 (812)
T ss_pred hhhcCCccccH---HHHhccceEEeeeHHHhhhhcchhhh
Confidence 78887633222 23355566788888888877776654
No 183
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.78 E-value=0.00016 Score=78.30 Aligned_cols=141 Identities=12% Similarity=0.034 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cC-----CcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~-----~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
+.|+.|+..++.+. -.+|.+++|+|||.+...++.. .. .++++.+||.-.+....+.+..... ....
T Consensus 148 ~~Qk~A~~~al~~~---~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~--~l~~ 222 (586)
T TIGR01447 148 NWQKVAVALALKSN---FSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK--NLAA 222 (586)
T ss_pred HHHHHHHHHHhhCC---eEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc--cccc
Confidence 79999999888875 7899999999999885444332 11 3689999998777776666554211 0000
Q ss_pred EEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEee
Q 010991 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179 (496)
Q Consensus 100 ~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTA 179 (496)
. .. ......+-..|...+........... ...-....+++||+|||-++....+.+++..++...+|.|.|
T Consensus 223 ~---~~----~~~~~~~~a~TiHrlLg~~~~~~~~~--~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 223 A---EA----LIAALPSEAVTIHRLLGIKPDTKRFR--HHERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred c---hh----hhhccccccchhhhhhcccCCcchhh--hcccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEEEC
Confidence 0 00 00011122455544443211100000 000112468999999999999999998999999888999988
Q ss_pred cCC
Q 010991 180 TLV 182 (496)
Q Consensus 180 Tp~ 182 (496)
=+.
T Consensus 294 D~~ 296 (586)
T TIGR01447 294 DKN 296 (586)
T ss_pred Chh
Confidence 754
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.77 E-value=0.00037 Score=76.46 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHH
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..|-+.|.+|+..++.+. ...+|.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK--DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCC--CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 468999999999988763 37889999999999887666654 467999999999999999998876
No 185
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.73 E-value=0.00048 Score=73.90 Aligned_cols=257 Identities=16% Similarity=0.150 Sum_probs=143.3
Q ss_pred CCCCCCcHHHHHHHHHHHh-------cCCCcceEEEeCCCCCh--HHHHHHHHHhc--CCcEEEEEeChHHHHHHHHHHH
Q 010991 21 KPHAQPRPYQEKSLSKMFG-------NGRARSGIIVLPCGAGK--SLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~-------~~~~~~~il~~~tG~GK--Tl~~i~~~~~~--~~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
.....|-.-|.+|+--+-. .|..-..+|-+..|.|| |+.+|.+=-.+ ++++|++.-++.|-..-.+.++
T Consensus 260 i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 260 IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchh
Confidence 3456788899999875422 23222445556666666 54454444444 4689999999999888888888
Q ss_pred HhhCCCCCcEEEEcCCcccc------ccCCCcEEEEchHHhhcccC-----CChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 90 LWSTIQDDQICRFTSDSKER------FRGNAGVVVTTYNMVAFGGK-----RSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 90 ~~~~~~~~~v~~~~g~~~~~------~~~~~~IiItT~~~l~~~~~-----r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
.. +.+...|..+..-...+ -.-...|+++||..|.-... ....+.++.+|+-..-=++||+||||..+
T Consensus 340 Di-gA~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 340 DI-GATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred hc-CCCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 74 44444443322211111 12235799999999874422 11235567777755555899999999998
Q ss_pred ch-------------HHHHHHHhccCccEEEEeecCCCCccchh---hhhhhhCccc-------------------cccC
Q 010991 159 AH-------------MFRKVISLTKSHCKLGLTATLVREDERIT---DLNFLIGPKL-------------------YEAN 203 (496)
Q Consensus 159 ~~-------------~~~~~l~~l~~~~~L~LTATp~r~d~~~~---~l~~l~gp~~-------------------~~~~ 203 (496)
|- +.-.+-+.++..+++.-|||-.-+..... .| .+.|+-. -+.-
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEPrNMaYM~RL-GlWGegtaf~eF~eFi~AvEkRGvGAMEIV 497 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEPRNMAYMVRL-GLWGEGTAFPEFEEFIHAVEKRGVGAMEIV 497 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCcchhhhhhhh-ccccCCCcCccHHHHHHHHHhcCCceeeee
Confidence 61 22233345777889999999553322211 11 1111110 0111
Q ss_pred HHHHHhCC-CC------CcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEec
Q 010991 204 WLDLVKGG-FI------ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFAD 276 (496)
Q Consensus 204 ~~~l~~~g-~l------~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~ 276 (496)
.+|+...| || ..+.+..-.++|+.+|..-|-. ...+++..-.||+....++... .+ -+-.++++
T Consensus 498 AMDMK~rGmYiARQLSFkgVsFrieEv~ls~eF~k~Yn~------a~~LW~ea~~kFq~a~e~m~~E--~R-~~Kt~wgQ 568 (1300)
T KOG1513|consen 498 AMDMKLRGMYIARQLSFKGVSFRIEEVPLSKEFRKVYNR------AAELWAEALNKFQQAAELMDLE--SR-TCKTLWGQ 568 (1300)
T ss_pred ehhhhhhhhhhhhhccccCceEEEEecccCHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhH--HH-HhhhHHHH
Confidence 12222122 22 2456666778999999887762 2234444445666666666433 22 22345666
Q ss_pred cHHHHHHHHHHc
Q 010991 277 NLFALTEYAMKL 288 (496)
Q Consensus 277 ~~~~~~~l~~~L 288 (496)
+-..-+.+.++|
T Consensus 569 FWsaHQRFFKyL 580 (1300)
T KOG1513|consen 569 FWSAHQRFFKYL 580 (1300)
T ss_pred hHHHHHHHHHHH
Confidence 655444444444
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.70 E-value=0.00025 Score=76.99 Aligned_cols=143 Identities=12% Similarity=0.068 Sum_probs=89.6
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cC----CcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IK----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~----~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.-+.|+.|+...+.++ -.+|.+++|+|||.+...++.. .. .++++++||.-.+....+.+..-.. .
T Consensus 153 ~~d~Qk~Av~~a~~~~---~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~--~-- 225 (615)
T PRK10875 153 EVDWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR--Q-- 225 (615)
T ss_pred CCHHHHHHHHHHhcCC---eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh--c--
Confidence 3589999999888765 7899999999999885444432 22 3688889998877766665543211 0
Q ss_pred EEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEe
Q 010991 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178 (496)
Q Consensus 99 v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LT 178 (496)
+. +...... ....-..|...+........... ...-....+++||+||+-.+....+..++..++...+|.|-
T Consensus 226 ~~-~~~~~~~----~~~~~a~TiHrlLg~~~~~~~~~--~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlv 298 (615)
T PRK10875 226 LP-LTDEQKK----RIPEEASTLHRLLGAQPGSQRLR--YHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFL 298 (615)
T ss_pred cc-cchhhhh----cCCCchHHHHHHhCcCCCccchh--hccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEe
Confidence 00 0011111 11122445554443321110000 00111246799999999999999998899999999999998
Q ss_pred ecCC
Q 010991 179 ATLV 182 (496)
Q Consensus 179 ATp~ 182 (496)
|=+-
T Consensus 299 GD~~ 302 (615)
T PRK10875 299 GDRD 302 (615)
T ss_pred cchh
Confidence 8764
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.51 E-value=0.002 Score=55.68 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeCh
Q 010991 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (496)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~ 78 (496)
+...+...+.....+..+|.+|+|+|||..+-.++... ..+++++....
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 34444444444233578999999999998877777665 55666555443
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=97.49 E-value=0.00032 Score=54.67 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHH
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
++...+.+. +-.+|.+|+|+|||.+.+..+..+ ++++||++|+...+++..+.+
T Consensus 2 av~~al~~~--~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGS--PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhC--CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 444444422 256669999999997765554432 568999999999998877777
No 189
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0017 Score=65.47 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=73.7
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccC
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG 112 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~ 112 (496)
.+..++..++-.+.|+++|+|+|||-+|-.++...+..+.-+..+..-+.+.++-+.+.-.
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~------------------- 98 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARK------------------- 98 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHH-------------------
Confidence 4456777766679999999999999999888888888877777766656655555544200
Q ss_pred CCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEeecCC
Q 010991 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (496)
Q Consensus 113 ~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTATp~ 182 (496)
......=-++++||+|++.-..-..++-.+....+++.-||=.
T Consensus 99 ---------------------------~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 99 ---------------------------NRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred ---------------------------HHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCC
Confidence 0000112379999999998666666777777778888888843
No 190
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.34 E-value=0.0005 Score=74.88 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=34.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHH
Q 010991 19 ELKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 19 ~l~~~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i 61 (496)
.....+++||-|..-+.+++.. .++.+|++-.|||+|||+..+
T Consensus 15 ~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 15 PVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 3456788999999999888764 234589999999999998843
No 191
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.0017 Score=63.44 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=35.2
Q ss_pred CcHHHHHHHH---HHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHH
Q 010991 26 PRPYQEKSLS---KMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQ 83 (496)
Q Consensus 26 lr~yQ~~al~---~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Q 83 (496)
+-+-|..++. .|...+ .+.++.+|+|+|||..+.+++.. .+.+++++ +...|+.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-~~~~L~~~ 148 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-RTTDLVQK 148 (269)
T ss_pred CCHHHHHHHHHHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-eHHHHHHH
Confidence 4456666664 355544 58999999999999987777643 34456544 43445443
No 192
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.27 E-value=0.0026 Score=71.13 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=80.8
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH---HhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~---~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
..+.|-+-|.+|+..++..+ +-.+|.++.|+|||.+.-++. ...+.++++++||...+..+. .-++++.
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~a-- 420 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AESGIES-- 420 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hccCCce--
Confidence 45778999999999888753 378899999999997744333 234668999999986555443 2223221
Q ss_pred EEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc-cCccEEEE
Q 010991 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGL 177 (496)
Q Consensus 99 v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l-~~~~~L~L 177 (496)
.|...+.....+. ... ..+.++||+||+-.+....+..++... ....+|.|
T Consensus 421 --------------------~Ti~~~~~~~~~~------~~~--~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliL 472 (744)
T TIGR02768 421 --------------------RTLASLEYAWANG------RDL--LSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVL 472 (744)
T ss_pred --------------------eeHHHHHhhhccC------ccc--CCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEE
Confidence 1222221100000 001 146789999999999988888888744 45677888
Q ss_pred eecC
Q 010991 178 TATL 181 (496)
Q Consensus 178 TATp 181 (496)
-|=+
T Consensus 473 VGD~ 476 (744)
T TIGR02768 473 VGDP 476 (744)
T ss_pred ECCh
Confidence 8843
No 193
>PRK04296 thymidine kinase; Provisional
Probab=97.26 E-value=0.0011 Score=61.48 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=25.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN 77 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~ 77 (496)
-.++.+|||+|||..++.++... +.+++++-|.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~ 39 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA 39 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35778999999998887777553 5678887663
No 194
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.25 E-value=0.00052 Score=76.08 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=54.8
Q ss_pred CCCCCcHHHHHHHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 22 PHAQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
+.+++||.|.+.+..+.... .+..+++-+|||+|||+..+.++... +++++|.++|..+.+|..++...+
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 57899999999988764321 11358999999999999987776543 489999999999999977776553
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.22 E-value=0.0014 Score=65.11 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=36.3
Q ss_pred cEEEEcCCcccCchHHHHHHHhccCccEEEEeecCCCCccc
Q 010991 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDER 187 (496)
Q Consensus 147 ~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTATp~r~d~~ 187 (496)
.+||+|||+.+-......++.+.....+|.||+-|.+-|..
T Consensus 353 ~FiIIDEaQNLTpheikTiltR~G~GsKIVl~gd~aQiD~~ 393 (436)
T COG1875 353 SFIIIDEAQNLTPHELKTILTRAGEGSKIVLTGDPAQIDTP 393 (436)
T ss_pred ceEEEehhhccCHHHHHHHHHhccCCCEEEEcCCHHHcCCc
Confidence 48999999999998888899999999999999999765543
No 196
>PRK06526 transposase; Provisional
Probab=97.21 E-value=0.002 Score=62.56 Aligned_cols=100 Identities=16% Similarity=0.282 Sum_probs=57.5
Q ss_pred HHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCC
Q 010991 37 MFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN 113 (496)
Q Consensus 37 ~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~ 113 (496)
|+..+ .+.++++|+|+|||..+.+++.. .+.+++++.. .+|.+++.... . .
T Consensus 94 fi~~~--~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~-----~~l~~~l~~~~--~---------------~-- 147 (254)
T PRK06526 94 FVTGK--ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA-----AQWVARLAAAH--H---------------A-- 147 (254)
T ss_pred hhhcC--ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH-----HHHHHHHHHHH--h---------------c--
Confidence 44443 58999999999999998776544 3456655322 34555554310 0 0
Q ss_pred CcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-----HHHHHHH-hccCccEEEEeecCC
Q 010991 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVIS-LTKSHCKLGLTATLV 182 (496)
Q Consensus 114 ~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~-~l~~~~~L~LTATp~ 182 (496)
.++. ..+..+ .++++|||||+|..+.. .+-.++. .......|..|..|+
T Consensus 148 -----~~~~-------------~~l~~l--~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 148 -----GRLQ-------------AELVKL--GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred -----CcHH-------------HHHHHh--ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 0111 112223 46889999999998732 1223443 233445677777775
No 197
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.19 E-value=0.0012 Score=72.67 Aligned_cols=118 Identities=21% Similarity=0.229 Sum_probs=83.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH---HhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEE
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~---~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (496)
.|..-|++|+.+++... ...+|.+-+|+|||-+...++ ...++++|+.+=|...+.+..-.++.+ +++ +..
T Consensus 669 ~LN~dQr~A~~k~L~ae--dy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~-~i~---~lR 742 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAE--DYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGF-GIY---ILR 742 (1100)
T ss_pred hcCHHHHHHHHHHHhcc--chheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhcc-Ccc---eee
Confidence 57889999999999875 477889999999997755554 446889999999998899988888775 333 222
Q ss_pred EcCCcc------c----------------cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc
Q 010991 102 FTSDSK------E----------------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (496)
Q Consensus 102 ~~g~~~------~----------------~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (496)
++...+ + .+-+...|+.+|-=-+. ...|..+.||++|+|||-.+.-
T Consensus 743 LG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~------------~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 743 LGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN------------HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC------------chhhhccccCEEEEcccccccc
Confidence 222211 0 12245667777742221 1345568999999999999886
Q ss_pred h
Q 010991 160 H 160 (496)
Q Consensus 160 ~ 160 (496)
+
T Consensus 811 P 811 (1100)
T KOG1805|consen 811 P 811 (1100)
T ss_pred c
Confidence 6
No 198
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.17 E-value=0.0037 Score=65.29 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=32.9
Q ss_pred HHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
+..++.++...+.++.+|+|+|||.++-.++.....+.+.+.+
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 6666776655689999999999999988887766665555544
No 199
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.16 E-value=0.031 Score=58.02 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=61.0
Q ss_pred cCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-----------------c
Q 010991 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-----------------I 323 (496)
Q Consensus 266 ~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-----------------i 323 (496)
....++|||+++=..--.+-..|. ...++-.++..+-.+.-..|.+| +.++++.|. +
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEE
Confidence 456789999998887777777774 45588889999999999999999 999999998 4
Q ss_pred cCCCCChhHHHHHccCcCcCC
Q 010991 324 SSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 324 ~~~~~s~~~~~Qr~GR~~R~g 344 (496)
.+.+..|.-|...+.-.....
T Consensus 377 Y~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 377 YGPPENPQFYSELLNMLDESS 397 (442)
T ss_pred ECCCCChhHHHHHHhhhcccc
Confidence 567777777766665554443
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0028 Score=54.18 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCc---EEEEEeChH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKS---CLCLATNAV 79 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~---~LIl~P~~~ 79 (496)
...+|.+|+|+|||..+..++..+... ++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 478999999999999999898887664 777776654
No 201
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.11 E-value=0.00053 Score=75.82 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=76.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccc--cCCCcE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGV 116 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~--~~~~~I 116 (496)
.+.++-+|||+|||+++-.++... ..++++++|-.+|+..-.+...+....++.++...+|+..... -..+++
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~v~~~~~ 1023 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKAVREADI 1023 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChhheecCce
Confidence 467888999999999976665442 3589999999988765333333322344667777888754332 245789
Q ss_pred EEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch
Q 010991 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (496)
Q Consensus 117 iItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (496)
+|||++..... .|+++.. +.+ ++++++|+||.|.+...
T Consensus 1024 ~ittpek~dgi-~Rsw~~r---~~v--~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1024 VITTPEKWDGI-SRSWQTR---KYV--QSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EEcccccccCc-cccccch---hhh--ccccceeecccccccCC
Confidence 99999877543 4444332 333 67889999999998854
No 202
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.0037 Score=68.86 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=72.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHH---HHHHHHHHhhCCCCCcEEEEcCCcccc---ccCCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD---QWAFQFKLWSTIQDDQICRFTSDSKER---FRGNAG 115 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~---Qw~~e~~~~~~~~~~~v~~~~g~~~~~---~~~~~~ 115 (496)
+.|.-+-||=|||+++..++.- .++.+.||...-=|+. .|...+-.|+++ .|++...+.... -.=.++
T Consensus 95 g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGl---svG~~~~~m~~~ek~~aY~~D 171 (822)
T COG0653 95 GDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGL---SVGVILAGMSPEEKRAAYACD 171 (822)
T ss_pred CceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCC---ceeeccCCCChHHHHHHHhcC
Confidence 4588899999999998777653 3567777766554543 388888888765 466544443211 112478
Q ss_pred EEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 116 IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
|.-+|..-+-++.-|.......-+.+. +...+.|+||++.+.
T Consensus 172 ItY~TnnElGFDYLRDNm~~~~ee~vq-r~~~faIvDEvDSIL 213 (822)
T COG0653 172 ITYGTNNELGFDYLRDNMVTSQEEKVQ-RGLNFAIVDEVDSIL 213 (822)
T ss_pred ceeccccccCcchhhhhhhccHHHhhh-ccCCeEEEcchhhee
Confidence 999998877777666543333333333 578899999999775
No 203
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.07 E-value=0.004 Score=70.98 Aligned_cols=124 Identities=18% Similarity=0.126 Sum_probs=79.9
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH---HHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA---ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~---~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.+.|-+-|.+|+..++... +-.+|.++.|+|||.+.-.+ +...+.+++.++||...+.. +..-++++.
T Consensus 344 g~~Ls~eQr~Av~~il~s~--~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~----L~e~tGi~a--- 414 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGR--DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAEN----LEGGSGIAS--- 414 (988)
T ss_pred CCCCCHHHHHHHHHHhcCC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHH----HhhccCcch---
Confidence 4679999999999888754 36789999999999773222 22346689999998865443 332122221
Q ss_pred EEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc-cCccEEEEe
Q 010991 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGLT 178 (496)
Q Consensus 100 ~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l-~~~~~L~LT 178 (496)
.|...+.....+. ... ....++|||||+-.+....+.+++... ....+|.|.
T Consensus 415 -------------------~TI~sll~~~~~~------~~~--l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 415 -------------------RTIASLEHGWGQG------RDL--LTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred -------------------hhHHHHHhhhccc------ccc--cccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEE
Confidence 1222221110000 001 145679999999999999888888755 456788888
Q ss_pred ecCC
Q 010991 179 ATLV 182 (496)
Q Consensus 179 ATp~ 182 (496)
|=|.
T Consensus 468 GD~~ 471 (988)
T PRK13889 468 GDPQ 471 (988)
T ss_pred CCHH
Confidence 7654
No 204
>PLN03025 replication factor C subunit; Provisional
Probab=96.95 E-value=0.0083 Score=60.41 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+...+.+..+..++...+.++.+|+|+|||..+.+++..+
T Consensus 19 ~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 19 EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3455556666666554578999999999999988888775
No 205
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.90 E-value=0.0072 Score=67.12 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
.+..++..++..+.++.+|+|+|||.++-.++.....++
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 344456665556899999999999998877776554433
No 206
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.79 E-value=0.0063 Score=59.41 Aligned_cols=23 Identities=22% Similarity=0.011 Sum_probs=19.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
.+.++.+|+|+|||.++-.++..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999998776654
No 207
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.75 E-value=0.015 Score=58.24 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEE-EeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGII-VLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il-~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
...+...+.+..+...++..+.++ .+|+|+|||..+-+++.....+++.+-++
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 24 ILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred cCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 345555556666666654345565 79999999999888877766655555554
No 208
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.75 E-value=0.02 Score=59.37 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.8
Q ss_pred CCcHHHHHHHHHH---HhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 25 QPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 25 ~lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
.++|-|.+=...+ +..+ +.+++-+|+|+|||+.-++++
T Consensus 16 ~iYPEQ~~YM~elKrsLDak--Gh~llEMPSGTGKTvsLLSli 56 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAK--GHCLLEMPSGTGKTVSLLSLI 56 (755)
T ss_pred ccCHHHHHHHHHHHHhhccC--CcEEEECCCCCCcchHHHHHH
Confidence 5788898866654 3333 689999999999998865554
No 209
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.74 E-value=0.0041 Score=69.44 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHh----cC--CcEEEEEeChHHHHHHHHHHHH
Q 010991 25 QPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR----IK--KSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~----~~--~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
.+||.|.+.+..+... ..++.+++-+|||+|||++.+.++.. .+ .++++.+.|.+=..|..+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 4599999999887543 12358999999999999987666543 23 4788888888888899999988
No 210
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.015 Score=61.14 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCc-ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 32 KSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 32 ~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
..+..++.+++-. ..++.+|.|+|||-+|..++..+.
T Consensus 28 ~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 28 GALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3455556655422 359999999999999988888764
No 211
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.018 Score=59.28 Aligned_cols=107 Identities=17% Similarity=0.289 Sum_probs=59.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEe-C-hH-HHHHHHHHHHHhhCCCCCcEEEEcCCccccccCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLAT-N-AV-SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN 113 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P-~-~~-L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~ 113 (496)
+..++++|||+|||-++..++..+ +.++.+++- + +. ..+| ++.|+...+..+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv-------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPV-------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcce--------------
Confidence 467788999999998876666542 235555543 2 12 2222 444443222112
Q ss_pred CcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-----HHHHHHHhccC--ccEEEEeecCC
Q 010991 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKS--HCKLGLTATLV 182 (496)
Q Consensus 114 ~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~l~~--~~~L~LTATp~ 182 (496)
..+.+++.+. ..+..+ .++++||+|++.+.... ...+++..... ...|.|+||--
T Consensus 237 --~~~~~~~~l~----------~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 237 --KAIESFKDLK----------EEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred --EeeCcHHHHH----------HHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 1122343332 223333 67899999999998843 22334443332 35688999974
No 212
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.67 E-value=0.019 Score=66.00 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=81.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH---HhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~---~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.+.|-+-|.+|+..+...+ +-++|.++.|+|||.+.-.+. ...+.+++.++||..-+. .+..-++++..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~--r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~----~L~e~~Gi~a~-- 450 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPA--RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAE----GLEKEAGIQSR-- 450 (1102)
T ss_pred CCCCCHHHHHHHHHHhccC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHH----HHHHhhCCCee--
Confidence 4689999999999876443 478899999999998743332 345678999999986554 34443344321
Q ss_pred EEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc-CccEEEEe
Q 010991 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGLT 178 (496)
Q Consensus 100 ~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~-~~~~L~LT 178 (496)
|...+....... ...+ ..-++|||||+..+....+..++.... ...+|.|-
T Consensus 451 --------------------TIas~ll~~~~~------~~~l--~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLV 502 (1102)
T PRK13826 451 --------------------TLSSWELRWNQG------RDQL--DNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLV 502 (1102)
T ss_pred --------------------eHHHHHhhhccC------ccCC--CCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEE
Confidence 222211000000 0011 345699999999999998888888775 56788888
Q ss_pred ecCC
Q 010991 179 ATLV 182 (496)
Q Consensus 179 ATp~ 182 (496)
|=|.
T Consensus 503 GD~~ 506 (1102)
T PRK13826 503 GDPE 506 (1102)
T ss_pred CCHH
Confidence 8654
No 213
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.64 E-value=0.049 Score=53.09 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHh--cCCCcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 26 PRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 26 lr~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.-+.+.+++..+.. ....+..+|.+|.|+|||..+-.++..+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34445566664321 11223678899999999998887777654
No 214
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.019 Score=63.12 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=28.5
Q ss_pred CCccEEEEcCCcccCchHHHHHHHhc---cCccEEEEeecC
Q 010991 144 REWGLLLMDEVHVVPAHMFRKVISLT---KSHCKLGLTATL 181 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~l---~~~~~L~LTATp 181 (496)
.+|.++||||+|.+....+..+++.+ ..+.++.|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 46889999999999976665555544 456778887774
No 215
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.60 E-value=0.013 Score=65.61 Aligned_cols=65 Identities=9% Similarity=-0.052 Sum_probs=44.1
Q ss_pred CCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HHHHHHHhc----cCccEEEEeecCCCC
Q 010991 112 GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT----KSHCKLGLTATLVRE 184 (496)
Q Consensus 112 ~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~~l----~~~~~L~LTATp~r~ 184 (496)
...+|++.|++.|.++.-. ..+....+..||+||||++... .+.-++..+ +..++.|+|+.|.-.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~--------~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~ 75 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT--------GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAF 75 (814)
T ss_pred hcCCEEEEechhhHhHHhc--------CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCccc
Confidence 3467999999998765321 1222257789999999999854 333333433 345899999999854
No 216
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.60 E-value=0.0087 Score=60.47 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-++...+.+..++.++.....++.+|+|+|||.++..++..+.
T Consensus 19 g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 19 GQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3566777777777766434789999999999999888877653
No 217
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.017 Score=62.60 Aligned_cols=37 Identities=27% Similarity=0.539 Sum_probs=28.4
Q ss_pred CCccEEEEcCCcccCchHHHHHHHhcc---CccEEEEeec
Q 010991 144 REWGLLLMDEVHVVPAHMFRKVISLTK---SHCKLGLTAT 180 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~l~---~~~~L~LTAT 180 (496)
..|.++||||+|.+....+..+++.+. .+.++.|..|
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 578899999999999877777777663 3456666666
No 218
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.47 E-value=0.0047 Score=60.11 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHh---cCCCcceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 28 PYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 28 ~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
-+|+..+..+.+ .+...+.+..+|+|+|||-++.+++..+..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 368887774432 222346788899999999999999988765
No 219
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.028 Score=56.64 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHHHhcCCC-cceEEEeCCCCChHHHHHHHHHhc
Q 010991 25 QPRPYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.++|+|...++.++..++- ...++.+|.|.|||..+..++..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 4689999999999987643 346688999999999988888764
No 220
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.028 Score=61.02 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 27 RPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.++=.+.+..++.+++ +...++.+|.|+|||-+|..++..+.
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444556666676654 33458999999999999988887764
No 221
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.026 Score=60.32 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 29 YQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 29 yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+-.+.+..++..++-.+ .++.+|.|+|||-++..++..+.
T Consensus 23 ~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 23 PVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 33445556666554334 48999999999999888887664
No 222
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.40 E-value=0.02 Score=61.97 Aligned_cols=147 Identities=15% Similarity=0.149 Sum_probs=93.9
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHH-HHHHHhhC-CC
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWA-FQFKLWST-IQ 95 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~-~e~~~~~~-~~ 95 (496)
......|||.+.++. +....-+..++..+.-+|||.+++.++.. ...++|++.||..++..|. ..|..... .|
T Consensus 13 w~~~~~Py~~eimd~-~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 13 WRTDRTPYLREIMDA-LSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCCCCChhHHHHHHh-cCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 456889999999995 44433457888999999999987777654 3579999999999999987 44544321 11
Q ss_pred CCcEEEEcC-------Ccc--ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch------
Q 010991 96 DDQICRFTS-------DSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------ 160 (496)
Q Consensus 96 ~~~v~~~~g-------~~~--~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------ 160 (496)
... ..+.. +.. ..+. +..+.+..-.+-. .|.+....++++||++.++..
T Consensus 92 ~l~-~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~--------------~l~s~~~r~~~~DEvD~~p~~~~~eGd 155 (557)
T PF05876_consen 92 VLR-RKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPS--------------NLRSRPARYLLLDEVDRYPDDVGGEGD 155 (557)
T ss_pred HHH-HHhCchhhcccCCchhheecC-CCEEEEEeCCCCc--------------ccccCCcCEEEEechhhccccCccCCC
Confidence 111 11211 110 1123 3445555443322 233467889999999999732
Q ss_pred ---HHHHHHHhccCccEEEEeecCCCCc
Q 010991 161 ---MFRKVISLTKSHCKLGLTATLVRED 185 (496)
Q Consensus 161 ---~~~~~l~~l~~~~~L~LTATp~r~d 185 (496)
...+-...+....++++..||....
T Consensus 156 p~~la~~R~~tf~~~~K~~~~STPt~~~ 183 (557)
T PF05876_consen 156 PVELAEKRTKTFGSNRKILRISTPTIEG 183 (557)
T ss_pred HHHHHHHHHhhhccCcEEEEeCCCCCCC
Confidence 1222233344567899999998764
No 223
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.033 Score=54.10 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=43.2
Q ss_pred HHhcCC--CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 37 MFGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 37 ~~~~~~--~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
+|.+++ .+..++.+|+|+||+..|-+.+...+ ++.+-+.++.|+..|..|-.+.
T Consensus 158 lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 158 LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHHH
Confidence 344543 45678889999999999988888877 7888888999999998777664
No 224
>PHA02533 17 large terminase protein; Provisional
Probab=96.35 E-value=0.041 Score=59.11 Aligned_cols=142 Identities=20% Similarity=0.186 Sum_probs=79.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH----H-hcCCcEEEEEeChHHHHHHHHHHHHhh-CCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----C-RIKKSCLCLATNAVSVDQWAFQFKLWS-TIQD 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~----~-~~~~~~LIl~P~~~L~~Qw~~e~~~~~-~~~~ 96 (496)
.+.|+|+|+..+..+... +..++..+=..|||.++..++ + ..+..+++++|+..-+....+.++... ..|.
T Consensus 57 Pf~L~p~Q~~i~~~~~~~---R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKN---RFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred ecCCcHHHHHHHHHHhcC---eEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 478999999999876533 355788899999998855332 1 123478899998765555555554322 1222
Q ss_pred C-cEEEEcCCcc-ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHHHHHHhccC-
Q 010991 97 D-QICRFTSDSK-ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKS- 171 (496)
Q Consensus 97 ~-~v~~~~g~~~-~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~l~~- 171 (496)
. ...+...... -.+..++.|.+.|-+. +........++|+||+|.+++. .+..+...+..
T Consensus 134 l~~~~i~~~~~~~I~l~NGS~I~~lss~~---------------~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~lasg 198 (534)
T PHA02533 134 FLQPGIVEWNKGSIELENGSKIGAYASSP---------------DAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVISSG 198 (534)
T ss_pred HhhcceeecCccEEEeCCCCEEEEEeCCC---------------CccCCCCCceEEEeccccCCCHHHHHHHHHHHHHcC
Confidence 1 1111111111 1123344443433221 1112356778999999999873 33333333333
Q ss_pred -ccEEEEeecCC
Q 010991 172 -HCKLGLTATLV 182 (496)
Q Consensus 172 -~~~L~LTATp~ 182 (496)
..++.+..||.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 23566777775
No 225
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.033 Score=62.38 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=26.2
Q ss_pred HHHHHhcCCCcce-EEEeCCCCChHHHHHHHHHhcC
Q 010991 34 LSKMFGNGRARSG-IIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 34 l~~~~~~~~~~~~-il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+..++..++-.++ |+.+|.|+|||.++..++..+.
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4445555543455 8999999999999988887764
No 226
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.32 E-value=0.016 Score=59.43 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHHh---cCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHH--HHHHHHhhCCCC
Q 010991 25 QPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQW--AFQFKLWSTIQD 96 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw--~~e~~~~~~~~~ 96 (496)
+|-+-|+.++..++. ...+.+..|.++-|+|||.+.-++...+ ++.+++++||...+... -..+..++++|.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 366789999887733 2344688999999999999976665544 45799999998766554 244555555542
Q ss_pred CcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHH
Q 010991 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (496)
Q Consensus 97 ~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~ 165 (496)
.. ... ...-+.... .....+ ...+++|+||+-.+.+..|..+
T Consensus 81 ~~------~~~------~~~~~~~~~-------------~~~~~l--~~~~~lIiDEism~~~~~l~~i 122 (364)
T PF05970_consen 81 NN------NEK------SQCKISKNS-------------RLRERL--RKADVLIIDEISMVSADMLDAI 122 (364)
T ss_pred cc------ccc------ccccccccc-------------hhhhhh--hhheeeecccccchhHHHHHHH
Confidence 11 000 001011111 112233 5778999999999998876644
No 227
>PRK08727 hypothetical protein; Validated
Probab=96.29 E-value=0.062 Score=51.48 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=21.3
Q ss_pred cceEEEeCCCCChHHHHHHHHH---hcCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl 74 (496)
...++.+|+|+|||..+.+++. ..+.+++++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~ 75 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL 75 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 3588999999999987666543 234455554
No 228
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.29 E-value=0.005 Score=69.68 Aligned_cols=110 Identities=19% Similarity=0.278 Sum_probs=78.1
Q ss_pred CcHHHHHHHHHHhh-hcCCCeEEEEeccHHHHHHHHHHcCC----CeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---
Q 010991 251 NKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLRK----PMIYGATSHVERTKILQAFKCSRDLNTIFLSK--- 322 (496)
Q Consensus 251 ~K~~~l~~ll~~~~-~~~g~kiIVF~~~~~~~~~l~~~L~~----~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--- 322 (496)
.|+..+-.++.+.+ +....++|||++....++-++..+.. -...|++. +-..-+..|++ +.||++-.
T Consensus 1203 ~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~--d~~dc~~~fk~---I~clll~~~~~ 1277 (1394)
T KOG0298|consen 1203 TKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE--DFDDCIICFKS---IDCLLLFVSKG 1277 (1394)
T ss_pred cCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc--chhhhhhhccc---ceEEEEEeccC
Confidence 35555544443332 14457999999999999888887742 22345432 44566677766 56665433
Q ss_pred -------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 323 -------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 323 -------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
...+.-|+..++|++||++|+| |...++||.++-.+|+|+.+.
T Consensus 1278 ~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiG-----------Q~~pT~V~~fiv~~TvEe~Il 1333 (1394)
T KOG0298|consen 1278 SKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIG-----------QKRPTFVHRFIVNETVEENIL 1333 (1394)
T ss_pred cccccHHhhhhhheeccccCchHHHhhhhhhhhcc-----------cccchhhhhhhhccchHHHHH
Confidence 4556678899999999999999 667899999999999999774
No 229
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.28 E-value=0.023 Score=56.63 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=61.6
Q ss_pred HHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCc---EEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccc
Q 010991 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKS---CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF 110 (496)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~---~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~ 110 (496)
+...+..++-.+.|+++|+|+|||-.|-.++...+.+ ++=+.-+.+=+...++-|++-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~a------------------- 213 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQA------------------- 213 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHH-------------------
Confidence 3445555666689999999999999988888877765 333333333333333333331
Q ss_pred cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEeecCC
Q 010991 111 RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (496)
Q Consensus 111 ~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTATp~ 182 (496)
+.. ..+ ...-.++.+||+|++.-..-.-++-.+...-+++.-||-.
T Consensus 214 ------------------------q~~-~~l-~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 214 ------------------------QNE-KSL-TKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred ------------------------HHH-Hhh-hcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccC
Confidence 000 111 1234478999999986443333444444556677777754
No 230
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.051 Score=52.74 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=35.4
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhc--CCcEEEEEeChHHHHHHHHHHH
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~--~~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
++.+.++.+|+|.|||..+++++..+ .+.-++++++..++.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 34699999999999999988886554 3345555677777777666654
No 231
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.15 E-value=0.036 Score=52.48 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+.+..+......+..+|.+|+|+|||..+..++...
T Consensus 26 ~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 26 LAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3444445434445688999999999999987776553
No 232
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.15 E-value=0.087 Score=49.04 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=60.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeC--hHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN--AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~--~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiIt 119 (496)
-.++++|||+|||-++..++... ++++.+++.- +.=...+-+.+.+..++| .+......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp-----~~~~~~~~----------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP-----FYVARTES----------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE-----EEESSTTS-----------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccc-----cchhhcch-----------
Confidence 46789999999998876666542 5566666642 222222333333333322 11111000
Q ss_pred chHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-----HHHHHHHhccC-ccEEEEeecCC
Q 010991 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKS-HCKLGLTATLV 182 (496)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~l~~-~~~L~LTATp~ 182 (496)
.+..+ ..+.++.+...++++|++|-+-+.+.. ..++++..+.. ...|.++||--
T Consensus 67 ~~~~~---------~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 67 DPAEI---------AREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp CHHHH---------HHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred hhHHH---------HHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 01111 123345555578999999999888743 34455555543 35677888874
No 233
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.035 Score=58.75 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 27 RPYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.++-.+.+..++..++-.+ .++.+|+|+|||..|-.++..+.
T Consensus 19 q~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 19 QDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444555666666654333 58999999999999888877654
No 234
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.09 E-value=0.06 Score=51.65 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~ 65 (496)
..++..+.......+.+|.+|+|+|||..+.+++.
T Consensus 33 ~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 33 LAALQNALRQEHSGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 33444444333335789999999999987665543
No 235
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.09 E-value=0.028 Score=52.90 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=23.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LI 73 (496)
.+.++.+|+|+|||-.|-.++...+.++.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~ 80 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKI 80 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence 478999999999999888888888766543
No 236
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.09 E-value=0.031 Score=54.98 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=77.7
Q ss_pred CCCCCCcHHHHHHHHHH---Hhc---CCCcceEEEeCCCCChHHHHHHHHHhcC---------CcE-EEEEeChHHHHHH
Q 010991 21 KPHAQPRPYQEKSLSKM---FGN---GRARSGIIVLPCGAGKSLVGVSAACRIK---------KSC-LCLATNAVSVDQW 84 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~---~~~---~~~~~~il~~~tG~GKTl~~i~~~~~~~---------~~~-LIl~P~~~L~~Qw 84 (496)
.+.+--+|-=.+++..+ +.. .+-.+.+|++++|-|||-++-.+..... .|| +|-+|...-..-.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 34555567666777754 222 2445899999999999988766665432 144 4445666555666
Q ss_pred HHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----
Q 010991 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---- 160 (496)
Q Consensus 85 ~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---- 160 (496)
+..+...++.|... .. +...+ .......+......++||||.|++.+.
T Consensus 113 Y~~IL~~lgaP~~~--------------~~-----~~~~~---------~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~ 164 (302)
T PF05621_consen 113 YSAILEALGAPYRP--------------RD-----RVAKL---------EQQVLRLLRRLGVRMLIIDEFHNLLAGSYRK 164 (302)
T ss_pred HHHHHHHhCcccCC--------------CC-----CHHHH---------HHHHHHHHHHcCCcEEEeechHHHhcccHHH
Confidence 77776655544211 00 00111 112235555678899999999998754
Q ss_pred --HHHHHHHhccCc--cEEEEeecCC
Q 010991 161 --MFRKVISLTKSH--CKLGLTATLV 182 (496)
Q Consensus 161 --~~~~~l~~l~~~--~~L~LTATp~ 182 (496)
.|-.+++.+... --|.+-||+.
T Consensus 165 qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 165 QREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHHHhhccCCCeEEeccHH
Confidence 344444444333 2244567764
No 237
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.02 E-value=0.023 Score=48.55 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.4
Q ss_pred eEEEeCCCCChHHHHHHHHHhcCCcEEEEEeCh
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~ 78 (496)
.+|.+|+|+|||..+-.++..++.+++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 378999999999999999988887776666655
No 238
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.00 E-value=0.017 Score=57.37 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----c---CCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----I---KKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~---~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
|.+-|.+++.. ..+ +.+|.+..|||||.+.+.-+.. . ..++|++++|+..+....+.+...+
T Consensus 1 l~~eQ~~~i~~--~~~---~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEG---PLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SS---EEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCC---CEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 45779999885 333 8899999999999986554332 2 2479999999999998888888754
No 239
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.075 Score=58.16 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=26.9
Q ss_pred CCccEEEEcCCcccCchHHHHHHHhc---cCccEEEEeec
Q 010991 144 REWGLLLMDEVHVVPAHMFRKVISLT---KSHCKLGLTAT 180 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~l---~~~~~L~LTAT 180 (496)
..+.++||||||++....+..+++.+ +.+.++.|..|
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 47889999999999977666665555 34556666655
No 240
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.95 E-value=0.014 Score=55.52 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=55.6
Q ss_pred EEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhc
Q 010991 47 IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~ 126 (496)
+|.++.|+|||-....++... ..+.+..|+..+...|. ... .....-.|-++.+...
T Consensus 2 vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~------~~~----------------~~~~~~~v~s~~~~~~ 58 (234)
T PF01443_consen 2 VVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWL------PDP----------------PSKSVRTVDSFLKALV 58 (234)
T ss_pred EEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccc------ccc----------------CCccccEEeEhhhccc
Confidence 688999999998777777666 22333345555666555 000 0011122333322210
Q ss_pred ccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEeecCCC
Q 010991 127 GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (496)
Q Consensus 127 ~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTATp~r 183 (496)
. ....+.+||||++.+......-++...+.. .+.|-|=|.+
T Consensus 59 ~---------------~~~~~~liiDE~~~~~~g~l~~l~~~~~~~-~~~l~GDp~Q 99 (234)
T PF01443_consen 59 K---------------PKSYDTLIIDEAQLLPPGYLLLLLSLSPAK-NVILFGDPLQ 99 (234)
T ss_pred c---------------cCcCCEEEEeccccCChHHHHHHHhhccCc-ceEEEECchh
Confidence 0 125789999999999987665444444443 3445566654
No 241
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.074 Score=60.00 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcCC---c---EEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 27 RPYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIKK---S---CLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~~---~---~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.++-.+.|..++.+++-.+ .|+.+|.|+|||.++..++..+.. + ..-.|++ +.+|. . .+.....+
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s---C~~~~----~-g~~~~~dv 91 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS---CVALA----P-GGPGSLDV 91 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH---HHHHH----c-CCCCCCcE
Confidence 3444555666676654344 589999999999999888876531 1 1222332 23221 1 01112233
Q ss_pred EEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc---cCccEEE
Q 010991 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT---KSHCKLG 176 (496)
Q Consensus 100 ~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l---~~~~~L~ 176 (496)
..+.+... + ..+.+.....+ -...-+ ...+.++||||+|+|....+..+++.+ ..+.++.
T Consensus 92 ~eidaas~--------~---~Vd~iR~l~~~-----~~~~p~-~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fI 154 (824)
T PRK07764 92 TEIDAASH--------G---GVDDARELRER-----AFFAPA-ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFI 154 (824)
T ss_pred EEeccccc--------C---CHHHHHHHHHH-----HHhchh-cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 33322110 0 11222111000 000011 257889999999999977665555555 4556666
Q ss_pred Eeec
Q 010991 177 LTAT 180 (496)
Q Consensus 177 LTAT 180 (496)
|..|
T Consensus 155 l~tt 158 (824)
T PRK07764 155 FATT 158 (824)
T ss_pred EEeC
Confidence 6554
No 242
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.92 E-value=0.066 Score=52.26 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=51.9
Q ss_pred HHHHHHhcCCCccEEEEee-----------------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeE
Q 010991 304 KILQAFKCSRDLNTIFLSK-----------------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNA 360 (496)
Q Consensus 304 ~il~~F~~~~~~~vlv~s~-----------------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~ 360 (496)
...+.|++| +.+++|+|. .+..+||....+|.+||+||.++. . +
T Consensus 52 ~e~~~F~~g-~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~-----------~-~ 118 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV-----------S-A 118 (278)
T ss_pred HHHHHHhCC-CceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc-----------c-C
Confidence 567899999 899999988 456779999999999999999953 2 3
Q ss_pred EEEEEEcCCC-hHHHHHHHHHHHHHHcCc
Q 010991 361 FFYSLVSTDT-QEMFYSTKRQQFLIDQGY 388 (496)
Q Consensus 361 ~vy~lvs~~t-~e~~~~~~r~~~l~~~g~ 388 (496)
-.|.++..+. -|..++.---+.|...|.
T Consensus 119 P~y~~l~t~~~gE~Rfas~va~rL~sLgA 147 (278)
T PF13871_consen 119 PEYRFLVTDLPGERRFASTVARRLESLGA 147 (278)
T ss_pred CEEEEeecCCHHHHHHHHHHHHHHhhccc
Confidence 3455555554 465666555555655554
No 243
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.05 Score=59.31 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=28.3
Q ss_pred CCccEEEEcCCcccCchHHHHHHHhcc---CccEEEEeecC
Q 010991 144 REWGLLLMDEVHVVPAHMFRKVISLTK---SHCKLGLTATL 181 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~l~---~~~~L~LTATp 181 (496)
..|.++||||+|.+....|..+++.+. .+.++.|+.|-
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 468899999999999887777776663 44566666653
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.099 Score=53.56 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=59.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe-C--hHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N--AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P-~--~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~Ii 117 (496)
+...+++|+|+|||-.+..++..+ +.++.++.. + ...++||..-... .++| + +.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~-lgip---v----------------~v 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-IGFE---V----------------IA 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhh-cCCc---E----------------Ee
Confidence 467889999999998876666543 345665554 2 2346666642221 1111 1 22
Q ss_pred EEchHHhhcccCCChhHHHHHHHHhc-CCccEEEEcCCcccCch--H---HHHHHHhccCc-cEEEEeecCC
Q 010991 118 VTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAH--M---FRKVISLTKSH-CKLGLTATLV 182 (496)
Q Consensus 118 ItT~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~~--~---~~~~l~~l~~~-~~L~LTATp~ 182 (496)
+.++..+. +.+..+.. .++++||+|-+=+.... . ..+++...... ..|.|+||-.
T Consensus 302 ~~d~~~L~----------~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk 363 (436)
T PRK11889 302 VRDEAAMT----------RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 363 (436)
T ss_pred cCCHHHHH----------HHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC
Confidence 23444332 22344432 36899999999776632 2 33344333333 3455788753
No 245
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.82 E-value=0.096 Score=50.29 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=42.7
Q ss_pred HHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
...++.++.+| ++...+|.+|+|+|||..+..++.. .+.++++++.-- -..|..+.+..+
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee-~~~~i~~~~~~~ 71 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE-HPVQVRRNMAQF 71 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC-CHHHHHHHHHHh
Confidence 35677777765 3346677899999999998876654 466888888644 466666666654
No 246
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.79 E-value=0.14 Score=49.34 Aligned_cols=57 Identities=26% Similarity=0.193 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHh---c--CCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHH
Q 010991 28 PYQEKSLSKMFG---N--GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 28 ~yQ~~al~~~~~---~--~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
+.|..++..+.. + ....+.++.+++|+|||..+.+++..+ +.+++++ +. .+|...++
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~----~~l~~~l~ 143 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TV----ADIMSAMK 143 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EH----HHHHHHHH
Confidence 456666665432 1 111367899999999999988877654 4455554 43 33444444
No 247
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.11 Score=53.34 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=27.3
Q ss_pred HHHHHHH---HHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 29 YQEKSLS---KMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 29 yQ~~al~---~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.|..++. .++..++-.+ .++.+|.|+|||..+-.++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3555544 4444443233 48999999999999988887664
No 248
>PRK04195 replication factor C large subunit; Provisional
Probab=95.71 E-value=0.058 Score=57.56 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHHhc---C-CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 26 PRPYQEKSLSKMFGN---G-RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 26 lr~yQ~~al~~~~~~---~-~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
..+-+.+.+..|+.. + ..+..+|.+|+|+|||..+-+++..++..++.+-++
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 455555666666542 2 246789999999999999988888887666665443
No 249
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.68 E-value=0.21 Score=54.26 Aligned_cols=144 Identities=12% Similarity=0.136 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH---HHh-cCCcEEEEEeChHHHHHHHHHHHHhhC-------CC
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA---ACR-IKKSCLCLATNAVSVDQWAFQFKLWST-------IQ 95 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~---~~~-~~~~~LIl~P~~~L~~Qw~~e~~~~~~-------~~ 95 (496)
-|+=.+=+++++..-..+.-++..|=|.|||.+...+ ++. .+.+++|.+|...-+.+..+.++..+. .+
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp 250 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFP 250 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccC
Confidence 3444445555555433346788899999999874322 222 456899999987767776666555432 11
Q ss_pred CC-cEEEEcCCccc-cccC-------CCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH
Q 010991 96 DD-QICRFTSDSKE-RFRG-------NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (496)
Q Consensus 96 ~~-~v~~~~g~~~~-~~~~-------~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (496)
.. .+....|+... .+.. ...|...+.. .+.+....++++|+|||+.++.+.+..++
T Consensus 251 ~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars---------------~~s~RG~~~DLLIVDEAAfI~~~~l~aIl 315 (752)
T PHA03333 251 EEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS---------------PNAARGQNPDLVIVDEAAFVNPGALLSVL 315 (752)
T ss_pred CCceEEEeeCCeeEEEEecCcccccCcceeEEeccc---------------CCCcCCCCCCEEEEECcccCCHHHHHHHH
Confidence 11 22223332211 0110 0112221111 01223357899999999999999888877
Q ss_pred Hhcc-CccEEEEeecCCCCc
Q 010991 167 SLTK-SHCKLGLTATLVRED 185 (496)
Q Consensus 167 ~~l~-~~~~L~LTATp~r~d 185 (496)
-.+. ...++.+.-||...+
T Consensus 316 P~l~~~~~k~IiISS~~~~~ 335 (752)
T PHA03333 316 PLMAVKGTKQIHISSPVDAD 335 (752)
T ss_pred HHHccCCCceEEEeCCCCcc
Confidence 7665 345666666665333
No 250
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.67 E-value=0.14 Score=51.13 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
++.+.+.+..++..+...+.++.+|+|+|||..+-.++..+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44556666666666544568999999999999887777665
No 251
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.093 Score=57.50 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+-.+.+..++..++ +...++.+|.|+|||.++..++..+.
T Consensus 23 ~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 23 HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 33445555666654 33468999999999999988887654
No 252
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.1 Score=56.54 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 28 PYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
++-.+.+..++..++-.+ .++.+|.|+|||-++..++..+.
T Consensus 19 ~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 19 EHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344445555666654345 47899999999999988887654
No 253
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.56 E-value=0.24 Score=44.60 Aligned_cols=121 Identities=15% Similarity=0.200 Sum_probs=62.6
Q ss_pred HHHhcCCC-cceEEEeCCCCChHHHHHHHHHhcCCcEE--EEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccC
Q 010991 36 KMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIKKSCL--CLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG 112 (496)
Q Consensus 36 ~~~~~~~~-~~~il~~~tG~GKTl~~i~~~~~~~~~~L--Il~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~ 112 (496)
.++.+++- ...++.+|.|+||+-.+..++..+...-. ..|.....+. .+... ..| .+..+.......
T Consensus 11 ~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~----~~~~~-~~~--d~~~~~~~~~~~--- 80 (162)
T PF13177_consen 11 NLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCR----RIEEG-NHP--DFIIIKPDKKKK--- 80 (162)
T ss_dssp HHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHH----HHHTT--CT--TEEEEETTTSSS---
T ss_pred HHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHH----HHHhc-cCc--ceEEEecccccc---
Confidence 34445432 34689999999999999998876532100 0333333222 22221 122 333333332210
Q ss_pred CCcEEEEchHHhhcccCCChhHHHHHHHHhc----CCccEEEEcCCcccCch---HHHHHHHhccCccEEEEeecC
Q 010991 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRN----REWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLGLTATL 181 (496)
Q Consensus 113 ~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~----~~~~~vIlDEaH~~~~~---~~~~~l~~l~~~~~L~LTATp 181 (496)
.|-+ + +...+.+++.. ..+.++||||||.|... .+.+.++.-+...++.|+++-
T Consensus 81 --~i~i---~----------~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 --SIKI---D----------QIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp --SBSH---H----------HHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred --hhhH---H----------HHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 1111 1 12222333322 35779999999999865 556666666667777777764
No 254
>PRK05642 DNA replication initiation factor; Validated
Probab=95.56 E-value=0.11 Score=49.86 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=23.5
Q ss_pred CCccEEEEcCCcccCch-HH----HHHHHhcc-CccEEEEeec
Q 010991 144 REWGLLLMDEVHVVPAH-MF----RKVISLTK-SHCKLGLTAT 180 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~-~~----~~~l~~l~-~~~~L~LTAT 180 (496)
.+.+++|+|++|.+... .+ -.+++.+. ....+.+|+|
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 35689999999988642 22 22444333 3466778776
No 255
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.52 E-value=0.033 Score=61.66 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=59.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
...|.+-|.+|+.. .. ++.+|.+..|+|||-+.+.-+..+ ..++|+++.++..+....+.+....+.
T Consensus 194 ~~~L~~~Q~~av~~--~~---~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~- 267 (684)
T PRK11054 194 SSPLNPSQARAVVN--GE---DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT- 267 (684)
T ss_pred CCCCCHHHHHHHhC--CC---CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC-
Confidence 46799999999973 22 367888899999999976665432 247999999999988888888775431
Q ss_pred CCcEEEEcCCccccccCCCcEEEEchHHhhc
Q 010991 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126 (496)
Q Consensus 96 ~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~ 126 (496)
..|.|.|+..+..
T Consensus 268 ------------------~~v~v~TFHSlal 280 (684)
T PRK11054 268 ------------------EDITARTFHALAL 280 (684)
T ss_pred ------------------CCcEEEeHHHHHH
Confidence 2477888887764
No 256
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.51 E-value=0.034 Score=54.30 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=59.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHh-----cCCcEEEEEeChHHHH-----HHHHHHHHhhCCC---CCcEEEEcCCcccccc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVD-----QWAFQFKLWSTIQ---DDQICRFTSDSKERFR 111 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~-----~~~~~LIl~P~~~L~~-----Qw~~e~~~~~~~~---~~~v~~~~g~~~~~~~ 111 (496)
-++|-+|||+||+-..=.++.. ....|++|+|....+. -|.-++.. .+.. +..+.-.+|...
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~E-gNY~~~~~gTi~P~t~t~~---- 163 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCE-GNYDCGPDGTIVPQTGTFR---- 163 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHh-cCCCCCCCCeecccccccc----
Confidence 4778899999999664444432 2457999999775432 37777765 2221 112333333322
Q ss_pred CCCcEEEEchHHhhcccCCC-hhHHHHHHHHhcCCccEEEEcCCc
Q 010991 112 GNAGVVVTTYNMVAFGGKRS-EESEKIIEEIRNREWGLLLMDEVH 155 (496)
Q Consensus 112 ~~~~IiItT~~~l~~~~~r~-~~~~~~~~~l~~~~~~~vIlDEaH 155 (496)
+..+-.||+-+....+-. ..-..+.....++..-+||+|||=
T Consensus 164 --P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECM 206 (369)
T PF02456_consen 164 --PKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECM 206 (369)
T ss_pred --ccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHH
Confidence 346667777665543321 111122333444677799999984
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.51 E-value=0.1 Score=47.61 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=34.0
Q ss_pred eEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 46 GIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+|.+|+|+|||..++.++. ..+.++++++..- ...+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~-~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE-SPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHc
Confidence 57899999999999877654 3467899887654 467777777665
No 258
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.51 E-value=0.088 Score=52.44 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=21.9
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+.++.+|+|+|||..+..++..++.+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999998888777655433
No 259
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.49 E-value=0.095 Score=47.86 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=26.1
Q ss_pred eEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChH
Q 010991 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~ 79 (496)
-++.+||+||||...+..+.. .+++++++-|...
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 367899999999887776643 4778999999764
No 260
>PRK04328 hypothetical protein; Provisional
Probab=95.49 E-value=0.15 Score=49.43 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+++.++.+| ++...+|.+|+|+|||..+..++.. .+.+++++.-.. -..+..+.+..+
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee-~~~~i~~~~~~~ 73 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE-HPVQVRRNMRQF 73 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC-CHHHHHHHHHHc
Confidence 4677788765 3346667899999999998877654 356888887543 355555665554
No 261
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.48 E-value=0.12 Score=56.23 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 27 RPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.+.-.+.+..++..++ +...++.+|.|+|||..+..++..+.
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3344455555666553 34678899999999999988887653
No 262
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.48 E-value=0.096 Score=55.88 Aligned_cols=40 Identities=20% Similarity=0.042 Sum_probs=27.9
Q ss_pred HHHHHHH---HHHhcC-CCcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 29 YQEKSLS---KMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 29 yQ~~al~---~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-|...+. ..+..+ -+...++.+|.|+|||-++-.++..+.
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3555444 334443 235788999999999999988887654
No 263
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.15 Score=54.97 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 28 PYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
++-.+.+..++..++-.+ .++.+|.|+|||.++-.++..+.
T Consensus 22 ~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 22 EHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344445555666554334 47999999999999888887664
No 264
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.36 E-value=0.19 Score=53.05 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=27.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQ 87 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e 87 (496)
+..+|.+|+|+|||..+-+++..+ ..+++++ +...+...+...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHH
Confidence 357899999999999877776554 2234444 444455444333
No 265
>PRK12377 putative replication protein; Provisional
Probab=95.36 E-value=0.11 Score=50.10 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=30.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQ 87 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e 87 (496)
.+.++.+|+|+|||..+.+++..+ +.++ +.++...|+.+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEEEHHHHHHHHHHH
Confidence 478899999999999988877654 3344 445556666655444
No 266
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.16 Score=52.52 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=20.6
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
....++.+|.|+|||..+..++..+
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3457789999999999998887664
No 267
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.15 Score=52.92 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCc-ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 29 YQEKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 29 yQ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.-.+.+..++.+++-. ..++.+|.|+|||.+|..++..+.
T Consensus 23 ~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 23 HITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred HHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344555666665433 467899999999999988887663
No 268
>PRK08116 hypothetical protein; Validated
Probab=95.35 E-value=0.31 Score=47.76 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=29.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
..++.+++|+|||..+.+++..+ +.+++ ..+...++..+...+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~-~~~~~~ll~~i~~~~ 161 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVI-FVNFPQLLNRIKSTY 161 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEE-EEEHHHHHHHHHHHH
Confidence 48899999999999988887654 34554 445555666554443
No 269
>PRK06893 DNA replication initiation factor; Validated
Probab=95.28 E-value=0.12 Score=49.28 Aligned_cols=22 Identities=18% Similarity=-0.114 Sum_probs=17.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
..+|.+|+|+|||..+.+++..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999887666644
No 270
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.27 E-value=0.22 Score=61.55 Aligned_cols=136 Identities=14% Similarity=0.119 Sum_probs=82.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH---HHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA---ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~---~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.+.|-+-|.+|+..++... .+-.+|.++.|+|||-+.-.+ +...+.++++++|+...+..+.++. ++....+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~-~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~----g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTST-KRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI----PRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCC-CCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh----cchhhhH
Confidence 4678999999999988763 246788899999999774333 3345678999999997666555442 2221111
Q ss_pred EEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc-CccEEEEe
Q 010991 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGLT 178 (496)
Q Consensus 100 ~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~-~~~~L~LT 178 (496)
..+.... +. .....|.+.+.+. . ..+ ..-++||||||-.+....+..++.... ...+|.|-
T Consensus 502 ~~~l~~l---~~---~~~~~tv~~fl~~-~---------~~l--~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlv 563 (1960)
T TIGR02760 502 ITWVKNL---FN---DDQDHTVQGLLDK-S---------SPF--SNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILL 563 (1960)
T ss_pred HHHHHhh---cc---cccchhHHHhhcc-c---------CCC--CCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEE
Confidence 1000000 00 0111222222110 0 000 356799999999999998888888664 45666665
Q ss_pred ecC
Q 010991 179 ATL 181 (496)
Q Consensus 179 ATp 181 (496)
|=+
T Consensus 564 GD~ 566 (1960)
T TIGR02760 564 NDS 566 (1960)
T ss_pred cCh
Confidence 543
No 271
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.27 E-value=0.14 Score=52.55 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=61.2
Q ss_pred HHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010991 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (496)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~ 105 (496)
...++.++.+| .+.-.+|.+++|+|||..++.++... +.+++++...- ...|+.....++ ++....
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rl-g~~~~~------- 138 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRL-GISTEN------- 138 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHc-CCCccc-------
Confidence 45667777654 22356778999999999988776543 45788887643 457776666553 332211
Q ss_pred ccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 106 ~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+.+..... ...+.+.+...+.++||||+.+.+.
T Consensus 139 ----------l~l~~e~~----------le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 139 ----------LYLLAETN----------LEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ----------EEEEccCc----------HHHHHHHHHhcCCcEEEEcchHHhh
Confidence 22221111 2233445555689999999998764
No 272
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.15 Score=52.09 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=58.2
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhc----C-CcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEE
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRI----K-KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~----~-~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~Ii 117 (496)
++..++++|||+|||.++..++... + .++.++.. -..-.-=.++++.|..+-...+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~----------------~~ 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPV----------------HA 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCce----------------Ee
Confidence 3578889999999999977776542 2 34554443 2221112234444432221111 11
Q ss_pred EEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-hHHHHHHHhcc-----CccEEEEeecCC
Q 010991 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRKVISLTK-----SHCKLGLTATLV 182 (496)
Q Consensus 118 ItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~~l~~l~-----~~~~L~LTATp~ 182 (496)
+.+...+. ..+..+ .+.++|+||++=+... ......+..+. ....|.|+||--
T Consensus 200 ~~~~~~l~----------~~l~~l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 200 VKDGGDLQ----------LALAEL--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred cCCcccHH----------HHHHHh--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC
Confidence 22222221 112333 5678999999987763 33333444332 124678899874
No 273
>CHL00181 cbbX CbbX; Provisional
Probab=95.24 E-value=0.1 Score=51.59 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=18.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
+.++.+|+|+|||.+|-+++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999998777554
No 274
>PRK14974 cell division protein FtsY; Provisional
Probab=95.23 E-value=0.21 Score=50.47 Aligned_cols=112 Identities=19% Similarity=0.152 Sum_probs=59.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeC---hHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN---AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~---~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~Ii 117 (496)
.-.++++++|+|||-+...++..+ +.+++++..- ....+||...... .+++ + +.+... .
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~-lgv~---v--~~~~~g------~--- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAER-LGVK---V--IKHKYG------A--- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHH-cCCc---e--ecccCC------C---
Confidence 356778999999998765555433 4466665532 3456777554443 2332 1 111100 0
Q ss_pred EEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-----HHHHHHHhccCc-cEEEEeecC
Q 010991 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKSH-CKLGLTATL 181 (496)
Q Consensus 118 ItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~l~~~-~~L~LTATp 181 (496)
.+..+. ...........+++||+|.++++..+ ..+++...+.+. ..|.++||.
T Consensus 206 --dp~~v~---------~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~ 264 (336)
T PRK14974 206 --DPAAVA---------YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA 264 (336)
T ss_pred --CHHHHH---------HHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc
Confidence 011111 01122333367889999999999743 233343334443 456678875
No 275
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.21 E-value=0.095 Score=58.80 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
.|.|-|++++.. .. +..+|.+..|||||.+...-+..+ ..++|+|+-|+..+...++.+.+..+..
T Consensus 4 ~Ln~~Q~~av~~--~~---g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~-- 76 (715)
T TIGR01075 4 GLNDKQREAVAA--PP---GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS-- 76 (715)
T ss_pred ccCHHHHHHHcC--CC---CCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc--
Confidence 478999999873 22 378999999999998865544432 2379999999999999999998864310
Q ss_pred cEEEEcCCccccccCCCcEEEEchHHhhcc
Q 010991 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (496)
Q Consensus 98 ~v~~~~g~~~~~~~~~~~IiItT~~~l~~~ 127 (496)
...+.|.|+..++..
T Consensus 77 ---------------~~~~~i~TfHs~~~~ 91 (715)
T TIGR01075 77 ---------------ARGMWIGTFHGLAHR 91 (715)
T ss_pred ---------------ccCcEEEcHHHHHHH
Confidence 124678998888654
No 276
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.19 Score=54.11 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 31 EKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 31 ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.+.+..++..++-.+ .++.+|.|+|||.++..++..+.
T Consensus 25 v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 25 LNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334555565553333 57899999999999988887653
No 277
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.18 E-value=0.16 Score=57.18 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|+.+..-+-.++..+...+.++++|+|+|||.++-.++..+
T Consensus 187 r~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 187 REDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred cHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44443333344545555799999999999999876666543
No 278
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.16 Score=54.31 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCccEEEEcCCcccCchHHHHHHHhccC---ccEEEEeec
Q 010991 144 REWGLLLMDEVHVVPAHMFRKVISLTKS---HCKLGLTAT 180 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~l~~---~~~L~LTAT 180 (496)
..+.+|||||+|.+....+..++..+.. ..++.|+++
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 4678999999999987666666666543 334445443
No 279
>PRK06921 hypothetical protein; Provisional
Probab=95.15 E-value=0.11 Score=50.86 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=27.2
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHH
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQ 83 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Q 83 (496)
..+.++.+++|+|||..+.+++..+ +.++++ ++...++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y-~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY-FPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEE-EEHHHHHHH
Confidence 3578999999999999987776654 234444 444444443
No 280
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.16 Score=55.28 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
++-.+.+..++.+++ ....++.+|.|+|||.++..++..+.
T Consensus 22 e~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 22 ETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 334455566666553 45677899999999999988887663
No 281
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.045 Score=57.96 Aligned_cols=126 Identities=16% Similarity=0.218 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC---CcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEc
Q 010991 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~---~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (496)
++-.+.+..++..++ +...++.+|.|+|||-+|..++..+. ++..--|-...-+. .+.. .....+..+.
T Consensus 19 e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~----~i~~---~~~~Dv~eid 91 (491)
T PRK14964 19 DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI----SIKN---SNHPDVIEID 91 (491)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH----HHhc---cCCCCEEEEe
Confidence 344445555555543 34688999999999999887776542 22111111111111 1221 1122344443
Q ss_pred CCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHh----cCCccEEEEcCCcccCchHHHHHHHhcc---CccEEE
Q 010991 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR----NREWGLLLMDEVHVVPAHMFRKVISLTK---SHCKLG 176 (496)
Q Consensus 104 g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~----~~~~~~vIlDEaH~~~~~~~~~~l~~l~---~~~~L~ 176 (496)
+.... ..+.+ +.+.+.+. ..++.++||||+|.+....+..+++.+. .+.++.
T Consensus 92 aas~~-----------~vddI----------R~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 92 AASNT-----------SVDDI----------KVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred cccCC-----------CHHHH----------HHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 32110 11111 11111111 1467899999999998876666666554 455666
Q ss_pred EeecC
Q 010991 177 LTATL 181 (496)
Q Consensus 177 LTATp 181 (496)
|+.|-
T Consensus 151 latte 155 (491)
T PRK14964 151 LATTE 155 (491)
T ss_pred EEeCC
Confidence 76663
No 282
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.13 E-value=0.077 Score=54.94 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=27.8
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.++.++.+|+|+|||.++-+++...+.+++.+..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 4578999999999999998888888777665544
No 283
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.12 E-value=0.15 Score=51.48 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHHh-----cCCCcceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 26 PRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 26 lr~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
-++...+.+..++. +...++.++.+|+|+|||..+..++..++..
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 45555555554443 2233578999999999999988887776544
No 284
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.06 E-value=0.12 Score=57.95 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
.|.|-|++++.. .. +..+|.+..|||||.+.+.-+..+ ..++|+|+-|+..+...++.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~--~~---g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~-- 81 (721)
T PRK11773 9 SLNDKQREAVAA--PL---GNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS-- 81 (721)
T ss_pred hcCHHHHHHHhC--CC---CCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC--
Confidence 588999999873 22 378899999999998865544432 2469999999999999999998864311
Q ss_pred cEEEEcCCccccccCCCcEEEEchHHhhcc
Q 010991 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (496)
Q Consensus 98 ~v~~~~g~~~~~~~~~~~IiItT~~~l~~~ 127 (496)
...+.|.|+..++..
T Consensus 82 ---------------~~~~~i~TfHs~~~~ 96 (721)
T PRK11773 82 ---------------QGGMWVGTFHGLAHR 96 (721)
T ss_pred ---------------CCCCEEEcHHHHHHH
Confidence 123678898888654
No 285
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.00 E-value=0.21 Score=59.74 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=78.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHH---HHHHHhc----CCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG---VSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~---i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
..|.+-|.+|+..++... .+-.+|.+..|+|||.+. +.++..+ +..++.++||...+.... . .+++.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~-dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~----e-~Gi~A 907 (1623)
T PRK14712 834 EKLTSGQRAATRMILETS-DRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR----S-AGVDA 907 (1623)
T ss_pred cccCHHHHHHHHHHHhCC-CceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH----H-hCchH
Confidence 378999999999988753 147888999999999884 2223222 346888999987655442 2 24432
Q ss_pred CcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccC-ccEE
Q 010991 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKL 175 (496)
Q Consensus 97 ~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~-~~~L 175 (496)
..|..|-.... .. .+. ..-.....+++|||||=.+.+..+..++..+.. ..++
T Consensus 908 ~TIasfL~~~~---------------~~----~~~-------~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garv 961 (1623)
T PRK14712 908 QTLASFLHDTQ---------------LQ----QRS-------GETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRA 961 (1623)
T ss_pred hhHHHHhcccc---------------ch----hhc-------ccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEE
Confidence 22211111000 00 000 000002457999999999999888888887765 4778
Q ss_pred EEeecCC
Q 010991 176 GLTATLV 182 (496)
Q Consensus 176 ~LTATp~ 182 (496)
.|-|=+.
T Consensus 962 VLVGD~~ 968 (1623)
T PRK14712 962 VASGDTD 968 (1623)
T ss_pred EEEcchh
Confidence 8777553
No 286
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=0.25 Score=53.61 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.++-.+.+..++..++-.+ .++.+|.|+|||.++-.++..+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556666666553334 5779999999999987777654
No 287
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.96 E-value=0.04 Score=51.73 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEc
Q 010991 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (496)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT 120 (496)
|.-.+.++.+|+|.|||-.+..++..+-++ ...+..... +.. + ..+.+|+=.+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~------------~~ke~vLEL-NAS---------d-----eRGIDvVRn~ 98 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGD------------SYKEAVLEL-NAS---------D-----ERGIDVVRNK 98 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhCh------------hhhhHhhhc-cCc---------c-----ccccHHHHHH
Confidence 344689999999999998888887765432 111122221 111 1 0112222222
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHHHHHhccCccEEEE
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLGL 177 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~l~~~~~L~L 177 (496)
.-+++.. .-.+...+...||+|||+.|-+. ..++.++.+...++++|
T Consensus 99 IK~FAQ~----------kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 99 IKMFAQK----------KVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred HHHHHHh----------hccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 2222211 11222356678999999999864 67888888877776665
No 288
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.96 E-value=0.13 Score=62.22 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH---Hhc----CCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~---~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
..|-+-|.+|+..++... .+-.+|.+..|+|||.+.-.++ ..+ +..++.++||.-.+.... . .+++.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~-dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e-~Gi~A 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILEST-DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----S-AGVDA 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----h-cCcch
Confidence 468999999999988753 2478888999999998743332 221 236888899987655432 2 24332
Q ss_pred CcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccC-ccEE
Q 010991 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKL 175 (496)
Q Consensus 97 ~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~-~~~L 175 (496)
. |...+....... .. ........-+++||||+=.+.+..+..++..+.. ..++
T Consensus 1040 ~----------------------TI~s~L~~~~~~---~~-~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garv 1093 (1747)
T PRK13709 1040 Q----------------------TLASFLHDTQLQ---QR-SGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRA 1093 (1747)
T ss_pred h----------------------hHHHHhcccccc---cc-cccCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEE
Confidence 2 222211100000 00 0000012447999999999999988888888765 5777
Q ss_pred EEeecC
Q 010991 176 GLTATL 181 (496)
Q Consensus 176 ~LTATp 181 (496)
.|-|=+
T Consensus 1094 VLVGD~ 1099 (1747)
T PRK13709 1094 VSSGDT 1099 (1747)
T ss_pred EEecch
Confidence 787754
No 289
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.90 E-value=0.14 Score=56.56 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc--------CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~--------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
-.|-++.++..-.+ +-.+|-..||+|||-+....+... ...+.+--|++-...-..+.+.+=-.-..-.
T Consensus 380 a~~~~~i~q~v~dn---~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~ 456 (1282)
T KOG0921|consen 380 AQYRSEILQAVAEN---RVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGE 456 (1282)
T ss_pred HHHHHHHHHHHhcC---ceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcc
Confidence 33444455533334 378889999999999865555431 1234444455533222333333211000011
Q ss_pred EEEEcCCccccc-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HH-HHHHHhc----cC
Q 010991 99 ICRFTSDSKERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MF-RKVISLT----KS 171 (496)
Q Consensus 99 v~~~~g~~~~~~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~-~~~l~~l----~~ 171 (496)
++.+.-...... .....|..+|-+.+..... .-+ +...++|+||.|..--. .| ..++..+ +.
T Consensus 457 tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e---------~gl--rg~sh~i~deiherdv~~dfll~~lr~m~~ty~d 525 (1282)
T KOG0921|consen 457 TCGYNVRFDSATPRPYGSIMFCTVGVLLRMME---------NGL--RGISHVIIDEIHERDVDTDFVLIVLREMISTYRD 525 (1282)
T ss_pred cccccccccccccccccceeeeccchhhhhhh---------hcc--cccccccchhhhhhccchHHHHHHHHhhhccchh
Confidence 221111111111 1234588888887764421 122 67889999999987633 22 3333333 33
Q ss_pred ccEEEEeecC
Q 010991 172 HCKLGLTATL 181 (496)
Q Consensus 172 ~~~L~LTATp 181 (496)
-+.+++|||.
T Consensus 526 l~v~lmsatI 535 (1282)
T KOG0921|consen 526 LRVVLMSATI 535 (1282)
T ss_pred hhhhhhhccc
Confidence 3667888885
No 290
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.86 E-value=0.19 Score=52.89 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=62.4
Q ss_pred HHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010991 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (496)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~ 105 (496)
...++.++.+| .+.-.+|.+++|+|||..++.++... +.+++++.-.- ...|+.....++ +....+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~ra~rl-g~~~~~------- 136 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLRAERL-GLPSDN------- 136 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHHHHHc-CCChhc-------
Confidence 34677777765 23456778999999999988777654 56888888644 467776666553 332111
Q ss_pred ccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 106 ~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+.+..... ...+.+.+...+.++||+|+.+.+.
T Consensus 137 ----------l~~~~e~~----------l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 137 ----------LYLLAETN----------LEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred ----------EEEeCCCC----------HHHHHHHHHhhCCCEEEEechhhhc
Confidence 22221111 2234455555688999999999764
No 291
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.86 E-value=0.33 Score=49.61 Aligned_cols=44 Identities=23% Similarity=0.177 Sum_probs=33.4
Q ss_pred CCCCcHHHHHHHHHHHh----cCCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
.+.=|..|.+.+..++. ++..++.+|.+|+|+|||.++-.++..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34558889888887765 334468999999999999987776654
No 292
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.85 E-value=0.12 Score=45.57 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=25.5
Q ss_pred eEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChH
Q 010991 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~ 79 (496)
.+|.+++|+|||..+..++... +.+++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 4789999999999887776554 467777776544
No 293
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.81 E-value=0.29 Score=53.03 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCC-cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 28 PYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
++-.+.+..++.+++- ...++.+|.|.|||.++..++..+.
T Consensus 22 e~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 22 DFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3444455566665532 3467899999999999888887653
No 294
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.76 E-value=0.11 Score=56.07 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.++-.+.+..++.+++ ++..++.+|.|+|||..|..++..+
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444455555565543 3456789999999999998888765
No 295
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.69 E-value=0.42 Score=59.17 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=79.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHH---HHHHh----cCCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV---SAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i---~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
...|.+-|.+|+..++.+.. +-.+|.+..|+|||.+.. .++.. .+.+++.++||...+.+. +. .+++
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~-~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L----~~-~g~~ 1090 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKD-RFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGEL----KS-AGVQ 1090 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH----Hh-cCCc
Confidence 46799999999998887631 466788999999997762 22222 345788899998765544 32 2433
Q ss_pred CCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc-CccE
Q 010991 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCK 174 (496)
Q Consensus 96 ~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~-~~~~ 174 (496)
...| .++.......... .. .....++|+|||=.+.+..+..++..+. +..+
T Consensus 1091 a~Ti----------------------~s~l~~~~~~~~~----~~--~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~ak 1142 (1960)
T TIGR02760 1091 AQTL----------------------DSFLTDISLYRNS----GG--DFRNTLFILDESSMVSNFQLTHATELVQKSGSR 1142 (1960)
T ss_pred hHhH----------------------HHHhcCccccccc----CC--CCcccEEEEEccccccHHHHHHHHHhccCCCCE
Confidence 2222 1111100000000 00 1345799999999999999888887764 4477
Q ss_pred EEEeecCC
Q 010991 175 LGLTATLV 182 (496)
Q Consensus 175 L~LTATp~ 182 (496)
+.|.|=+.
T Consensus 1143 ~vlvGD~~ 1150 (1960)
T TIGR02760 1143 AVSLGDIA 1150 (1960)
T ss_pred EEEeCChh
Confidence 88877653
No 296
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.68 E-value=0.03 Score=51.03 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=54.8
Q ss_pred EEEeCCCCChHHHH-HHHHHhcC---CcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEE---EcCCc-cccccCCCcEEE
Q 010991 47 IIVLPCGAGKSLVG-VSAACRIK---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR---FTSDS-KERFRGNAGVVV 118 (496)
Q Consensus 47 il~~~tG~GKTl~~-i~~~~~~~---~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~---~~g~~-~~~~~~~~~IiI 118 (496)
+|.++-|-|||-+. ++++.... .+++|.+|+..-+....+.+..- +....... ..... .........|-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~i~f 78 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKG--LKALGYKEEKKKRIGQIIKLRFNKQRIEF 78 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------CCC--B
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhh--ccccccccccccccccccccccccceEEE
Confidence 57889999999763 33332222 37999999987666544333321 11000000 00000 000011234555
Q ss_pred EchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEeecCCCCccc
Q 010991 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDER 187 (496)
Q Consensus 119 tT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTATp~r~d~~ 187 (496)
..++.+... ....+++|+|||=.++-+...+++ ....++.||-|---..+.
T Consensus 79 ~~Pd~l~~~---------------~~~~DlliVDEAAaIp~p~L~~ll---~~~~~vv~stTi~GYEGt 129 (177)
T PF05127_consen 79 VAPDELLAE---------------KPQADLLIVDEAAAIPLPLLKQLL---RRFPRVVFSTTIHGYEGT 129 (177)
T ss_dssp --HHHHCCT-------------------SCEEECTGGGS-HHHHHHHH---CCSSEEEEEEEBSSTTBB
T ss_pred ECCHHHHhC---------------cCCCCEEEEechhcCCHHHHHHHH---hhCCEEEEEeeccccccC
Confidence 555544322 134689999999999988877664 455678899997654443
No 297
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.68 E-value=0.51 Score=48.34 Aligned_cols=130 Identities=22% Similarity=0.154 Sum_probs=68.6
Q ss_pred CcHHHHHHHHHHHhcC----CCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEe-ChHHHHHHHHHHHHhhCCC
Q 010991 26 PRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLAT-NAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~----~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P-~~~L~~Qw~~e~~~~~~~~ 95 (496)
..+-+...+..++... +++-..+++|||.|||-+..-+++.. ++++=+|.. |= .---.++++.|+.+-
T Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY--RIGA~EQLk~Ya~im 259 (407)
T COG1419 182 YFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY--RIGAVEQLKTYADIM 259 (407)
T ss_pred hHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc--hhhHHHHHHHHHHHh
Confidence 3444555555444322 24678899999999998755555432 234444443 21 111234555554332
Q ss_pred CCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC-chHHHHHHHhc-----
Q 010991 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AHMFRKVISLT----- 169 (496)
Q Consensus 96 ~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~~~~~~~l~~l----- 169 (496)
+..+ .++.++.-|. ..+..+ .++++|.+|=+=+-. +.....-+..+
T Consensus 260 ~vp~----------------~vv~~~~el~----------~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~ 311 (407)
T COG1419 260 GVPL----------------EVVYSPKELA----------EAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSH 311 (407)
T ss_pred CCce----------------EEecCHHHHH----------HHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccc
Confidence 2222 4455555443 334444 677999999876655 43332222222
Q ss_pred cCccEEEEeecCCCCc
Q 010991 170 KSHCKLGLTATLVRED 185 (496)
Q Consensus 170 ~~~~~L~LTATp~r~d 185 (496)
....-|.||||--..|
T Consensus 312 ~i~~~Lvlsat~K~~d 327 (407)
T COG1419 312 SIEVYLVLSATTKYED 327 (407)
T ss_pred cceEEEEEecCcchHH
Confidence 1234588999975433
No 298
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.67 E-value=0.38 Score=49.76 Aligned_cols=44 Identities=20% Similarity=0.152 Sum_probs=32.0
Q ss_pred CCCcHHHHHHHHHHHh----cCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 24 AQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+.-|.-|.+.+...+. ++...+.+|.+|+|+|||.++-.++..+
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3447777777766653 3344679999999999999987777654
No 299
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.66 E-value=0.068 Score=59.39 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=49.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
.|.|-|.+|+.. .. +..+|.+..|||||.+.+.-+..+ ..++|+|+-|+..+....+.+.+.++
T Consensus 2 ~Ln~~Q~~av~~--~~---g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VT---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CC---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 477899999874 23 378899999999998865544332 23699999999999999999987654
No 300
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.64 E-value=0.13 Score=53.27 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=28.7
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.+++.+|.+|+|+|||..+-+++.....+.+.+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 34688999999999999998888888777766654
No 301
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.28 Score=53.53 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 27 RPYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.++..+.+..++..++-.+ .++.+|.|+|||.++..++..+.
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3444556666666654334 47899999999999988887653
No 302
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.60 E-value=0.31 Score=51.02 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=56.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiI 118 (496)
+..++++|+|+|||-++..++... +.++.+|.--. -..--.+++..|..+.+..+ ..+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~----------------~~~ 284 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPV----------------EVV 284 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCce----------------Ecc
Confidence 467888999999998876655432 23565554321 00001234444432211111 111
Q ss_pred EchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-----HHHHHHHhc--cCccEEEEeecCC
Q 010991 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLT--KSHCKLGLTATLV 182 (496)
Q Consensus 119 tT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~l--~~~~~L~LTATp~ 182 (496)
.++..+. ..+..+ ..+++||||-+-+.... .+..++... +....|.|+||.-
T Consensus 285 ~~~~~l~----------~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 285 YDPKELA----------KALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred CCHHhHH----------HHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 2222221 223333 46899999999776643 334444411 1234677899874
No 303
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.55 E-value=0.42 Score=45.33 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 29 YQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 29 yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
.....+..+... ...+..++.+|+|+|||..+.+++..
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455556655442 23357899999999999887666544
No 304
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.54 E-value=0.25 Score=54.98 Aligned_cols=81 Identities=10% Similarity=0.158 Sum_probs=58.2
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
|.|-|.+++.. .. ++.+|.+..|+|||.+.+.-+..+ ...+|+|+.|...+.+..+.+.+..+..
T Consensus 2 Ln~~Q~~av~~--~~---~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~--- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VT---GPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG--- 73 (664)
T ss_pred CCHHHHHHHhC--CC---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc---
Confidence 67889998873 22 378999999999998865544331 2368888888888999999888754311
Q ss_pred EEEEcCCccccccCCCcEEEEchHHhhcc
Q 010991 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (496)
Q Consensus 99 v~~~~g~~~~~~~~~~~IiItT~~~l~~~ 127 (496)
....|.|.|+..++..
T Consensus 74 -------------~~~~v~v~TfHs~a~~ 89 (664)
T TIGR01074 74 -------------EARGLTISTFHTLGLD 89 (664)
T ss_pred -------------ccCCeEEEeHHHHHHH
Confidence 1134778898888654
No 305
>PTZ00293 thymidine kinase; Provisional
Probab=94.52 E-value=0.34 Score=45.43 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=26.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChH
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~ 79 (496)
--++.+||++|||...+..+.. .+++++++-|...
T Consensus 6 i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D 43 (211)
T PTZ00293 6 ISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD 43 (211)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccc
Confidence 3467899999999766665544 4678999999763
No 306
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.49 E-value=0.19 Score=52.29 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=24.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVD 82 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~ 82 (496)
..+|.+|+|+|||..+.+++..+ +.+++++ +...+..
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SSEKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EHHHHHH
Confidence 46899999999999877666543 2355555 3333433
No 307
>PF13173 AAA_14: AAA domain
Probab=94.44 E-value=0.42 Score=40.97 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=19.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+-.+|.+|.|+|||..+..++....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3678899999999977666665544
No 308
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.41 E-value=0.16 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.104 Sum_probs=17.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
+.++.+|+|+|||.+|-+++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6788899999999998665543
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.39 E-value=0.24 Score=47.32 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=42.4
Q ss_pred HHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
...++.++.+| .+.-.+|.+++|+|||..+..++.. .+.+++++.-... ..+..+++..+
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 35677777665 3345667799999999998887644 4568888877554 56677777765
No 310
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.38 E-value=0.09 Score=49.94 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=40.9
Q ss_pred HHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---c-CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~-~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.++.++.+| ++...+|.+|+|+|||..++.++.. . +.++++++-... ..++.+.+..+
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~-~~~l~~~~~s~ 70 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP-PEELIENMKSF 70 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS--HHHHHHHHHTT
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC-HHHHHHHHHHc
Confidence 456677654 3456778899999999998877643 3 789999887554 67788888765
No 311
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.33 E-value=0.26 Score=46.08 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=30.9
Q ss_pred HHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeCh
Q 010991 36 KMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (496)
Q Consensus 36 ~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~ 78 (496)
.++.+| .+.-..|.+|+|+|||..++.++.. .+.+++++....
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 455554 2345678899999999998887754 356788888753
No 312
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.39 Score=52.76 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 33 SLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 33 al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.+..++..++ +...++.+|.|+|||.++..++..+.
T Consensus 27 ~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 27 TLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred HHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 3444555542 24568899999999999998887764
No 313
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.29 E-value=0.16 Score=57.76 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|+-+.+-+-.++......+.+|++|+|.|||.++-.++..+
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 66666666667766556799999999999999887776543
No 314
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.26 E-value=0.31 Score=48.74 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=29.2
Q ss_pred CCccEEEEcCCcccCch---HHHHHHHhccCccEEEEeec
Q 010991 144 REWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLGLTAT 180 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~---~~~~~l~~l~~~~~L~LTAT 180 (496)
..+.+||+|||+.+... .+.+.++.-+...++.|++.
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 46889999999999854 67777777677777888775
No 315
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.25 E-value=0.28 Score=49.12 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=37.0
Q ss_pred HHHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHH
Q 010991 31 EKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQ 83 (496)
Q Consensus 31 ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Q 83 (496)
..+++.++. +| +++-..|.+|+|+|||..++.++.. .++++++|-.--.+-.+
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 357787887 54 3345667899999999998777654 35688888665554443
No 316
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.35 Score=53.65 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=71.5
Q ss_pred HHHHHHHHHhc-----------CC-CcceEEEeCCCCChHHHHHHHHHhcCC--cEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 30 QEKSLSKMFGN-----------GR-ARSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 30 Q~~al~~~~~~-----------~~-~~~~il~~~tG~GKTl~~i~~~~~~~~--~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
|.+|+..+... ++ -++.+.++|||.|||..+-+++..+.+ ..+|-..-++ .+=.....+..|.|
T Consensus 496 Qd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSE--y~EkHsVSrLIGaP 573 (786)
T COG0542 496 QDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSE--YMEKHSVSRLIGAP 573 (786)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHH--HHHHHHHHHHhCCC
Confidence 77777765321 12 247888999999999999999988764 6777777665 33344555666666
Q ss_pred CCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc
Q 010991 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (496)
Q Consensus 96 ~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l 169 (496)
+.-|+--.|+. +.+.+.++.|.+|.+||+-..-...|.-++..+
T Consensus 574 PGYVGyeeGG~------------------------------LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 574 PGYVGYEEGGQ------------------------------LTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred CCCceeccccc------------------------------hhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 65554333331 123444578999999999887766666555544
No 317
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.15 E-value=0.12 Score=57.89 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=53.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNM 123 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~ 123 (496)
++.++++|||+|||.++-.++..+..+++.+ .-++..+ .....++.+.|+..++. ..-+.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i-d~se~~~--~~~~~~LiG~~~gyvg~-----------------~~~g~ 548 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRF-DMSEYME--RHTVSRLIGAPPGYVGF-----------------DQGGL 548 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEe-echhhcc--cccHHHHcCCCCCcccc-----------------cccch
Confidence 3578999999999999988888887665543 3222211 11233333333211110 00011
Q ss_pred hhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc
Q 010991 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (496)
Q Consensus 124 l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l 169 (496)
| .+.+....+++|++||+|.+....+..++..+
T Consensus 549 L-------------~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 549 L-------------TDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred H-------------HHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 1 12333467899999999999876655555544
No 318
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.12 E-value=0.64 Score=49.92 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhc
Q 010991 31 EKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 31 ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+.+..++..++-.+ .++.+|.|+|||-++..++..+
T Consensus 23 ~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 23 SKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 345555566554333 4789999999999988887665
No 319
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.10 E-value=0.19 Score=51.62 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.0
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
+++.+|.+|+|+|||.++-+++.....+.+-+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 356899999999999999988888877765554
No 320
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.41 Score=49.07 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHHHHH----hcCCCcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 23 HAQPRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~----~~~~~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...-|+-|...+...+ .++.+.+++|.++||+|||.++-.++.++.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~ 67 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELE 67 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHH
Confidence 4667888988887654 456667899999999999999877776653
No 321
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.07 E-value=0.26 Score=47.11 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=31.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
...+|.+++|+|||..+..++... +.++++++..-. ..+..+.+..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~-~~~~~~~~~~ 73 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT-TTEFIKQMMS 73 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHH
Confidence 467888999999999987766543 568888885432 3444444444
No 322
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.06 E-value=0.42 Score=50.44 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=54.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiI 118 (496)
...+|.+++|+|||..+-+++..+ +.+++++ +...+.......+..- .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv-~~~~f~~~~~~~l~~~----------------------~---- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM-SGDEFARKAVDILQKT----------------------H---- 194 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHHh----------------------h----
Confidence 357799999999998876655432 2345544 4355555554444320 0
Q ss_pred EchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-----HHHHHHHhcc-CccEEEEeec
Q 010991 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK-SHCKLGLTAT 180 (496)
Q Consensus 119 tT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~l~-~~~~L~LTAT 180 (496)
... ..+...+ ...+++|+||+|.+... .+..+++.+. ....+.+|+.
T Consensus 195 ~~~-------------~~~~~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 KEI-------------EQFKNEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred hHH-------------HHHHHHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 011 1122333 57889999999999743 3444444443 2345677744
No 323
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.04 E-value=0.3 Score=46.52 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=33.0
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeCh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~ 78 (496)
.+++.++.+| .+.-..|.+|.|+|||..+..++... ..+++++..-.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3566777764 23456788999999999988877542 25788887543
No 324
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.01 E-value=0.27 Score=49.33 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHH
Q 010991 29 YQEKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQW 84 (496)
Q Consensus 29 yQ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw 84 (496)
-=..+++.++. +| +++-..|.+|+|+|||..++.++.. .+.++++|.+--.+-.++
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 38 TGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred CCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH
Confidence 34467888887 55 3345567899999999998877654 467899888876655443
No 325
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.01 E-value=0.28 Score=46.44 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=33.8
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---C------CcEEEEEeChH
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---K------KSCLCLATNAV 79 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---~------~~~LIl~P~~~ 79 (496)
..++.++.+| .+.-..|++|+|+|||..++.++... . .+++++.....
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 3566677654 23456788999999999988777542 2 57888887553
No 326
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.96 E-value=0.87 Score=50.38 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=74.7
Q ss_pred cHHHHHHHH---HHHhcCCCcceEEEeCCCCChHHHH---HHHHHhcCC--cEEEEEeChHHHHHHHHHHHH---hhCCC
Q 010991 27 RPYQEKSLS---KMFGNGRARSGIIVLPCGAGKSLVG---VSAACRIKK--SCLCLATNAVSVDQWAFQFKL---WSTIQ 95 (496)
Q Consensus 27 r~yQ~~al~---~~~~~~~~~~~il~~~tG~GKTl~~---i~~~~~~~~--~~LIl~P~~~L~~Qw~~e~~~---~~~~~ 95 (496)
..-|.+++. .++..+ .+-.+|.++=|=|||.++ +.++..... +++|.+|+.+-+....+-+.+ +.|..
T Consensus 213 T~dQ~~~l~~~~~l~~~~-~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~ 291 (758)
T COG1444 213 TEDQAEALEILERLLDAP-KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYK 291 (758)
T ss_pred ChhHHHHHHHHHHHHcCC-CceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCc
Confidence 344555444 444443 246777899999999873 344555554 899999999765543322222 12322
Q ss_pred CCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEE
Q 010991 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175 (496)
Q Consensus 96 ~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L 175 (496)
...+....|...........|-..+|+... ..-++||+|||=-++-+-..+++.. ..++
T Consensus 292 ~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~------------------~~~DllvVDEAAaIplplL~~l~~~---~~rv 350 (758)
T COG1444 292 RKVAPDALGEIREVSGDGFRIEYVPPDDAQ------------------EEADLLVVDEAAAIPLPLLHKLLRR---FPRV 350 (758)
T ss_pred cccccccccceeeecCCceeEEeeCcchhc------------------ccCCEEEEehhhcCChHHHHHHHhh---cCce
Confidence 111111112212111122234444444221 1277999999999998876665543 3678
Q ss_pred EEeecCC
Q 010991 176 GLTATLV 182 (496)
Q Consensus 176 ~LTATp~ 182 (496)
.||-|--
T Consensus 351 ~~sTTIh 357 (758)
T COG1444 351 LFSTTIH 357 (758)
T ss_pred EEEeeec
Confidence 8888855
No 327
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.95 E-value=0.13 Score=47.12 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=26.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQ 83 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Q 83 (496)
.+.++.+|+|+|||..+.+++.. .+.+++++ +...|+..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceecc
Confidence 58999999999999998887644 34566664 44445443
No 328
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.86 E-value=0.66 Score=46.66 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHH---hcCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 25 QPRPYQEKSLSKMF---GNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 25 ~lr~yQ~~al~~~~---~~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.++|+|......+. ..++ +...++.+|.|.||+..|..++..+
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l 48 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL 48 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH
Confidence 35788887777654 3333 3355688999999999988887654
No 329
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.68 Score=50.82 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCC-cceEEEeCCCCChHHHHHHHHHhcCC-------cEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 29 YQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIKK-------SCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 29 yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~~~~~~~-------~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
...+.+..++.+++- ...++.+|.|.|||.++..++..+.. ...=.|+ .+. .|.......+.
T Consensus 24 ~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~---sC~-------~~~~~~~~n~~ 93 (614)
T PRK14971 24 ALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE---SCV-------AFNEQRSYNIH 93 (614)
T ss_pred HHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch---HHH-------HHhcCCCCceE
Confidence 334445556665533 34689999999999988877776531 1111222 122 22111122344
Q ss_pred EEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHh----cCCccEEEEcCCcccCchH---HHHHHHhccCcc
Q 010991 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR----NREWGLLLMDEVHVVPAHM---FRKVISLTKSHC 173 (496)
Q Consensus 101 ~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~----~~~~~~vIlDEaH~~~~~~---~~~~l~~l~~~~ 173 (496)
.+.+... + ..+.+. ...+.+. ..++.++||||+|.+.... +.+.++..+.+.
T Consensus 94 ~ld~~~~--------~---~vd~Ir----------~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 94 ELDAASN--------N---SVDDIR----------NLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred Eeccccc--------C---CHHHHH----------HHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 4443211 0 011121 1111111 1467899999999998654 445555555566
Q ss_pred EEEEeec
Q 010991 174 KLGLTAT 180 (496)
Q Consensus 174 ~L~LTAT 180 (496)
++.|++|
T Consensus 153 ifIL~tt 159 (614)
T PRK14971 153 IFILATT 159 (614)
T ss_pred EEEEEeC
Confidence 7777776
No 330
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.65 Score=42.72 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=25.1
Q ss_pred eEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeCh
Q 010991 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~ 78 (496)
-++.+||.||||..-+-.+.. .+.+++|..|..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 468899999999866655543 467899888854
No 331
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.77 E-value=0.32 Score=55.67 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHH---HhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 30 QEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 30 Q~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|.+-+..+ +..+...+.++++|+|.|||.++-.++..+
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44445544 445555799999999999999887766554
No 332
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.21 Score=49.94 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHH
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~ 82 (496)
.++++++.+|+|+|||+.|=+.|.+....+|=|+- ++|+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg-SElVq 223 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG-SELVQ 223 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc-HHHHH
Confidence 55689999999999999998888888776665554 56766
No 333
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.75 E-value=0.067 Score=49.81 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=22.9
Q ss_pred eEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
.+|++|||+|||-.++.++...+.+++++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 47899999999999999999998887653
No 334
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.71 E-value=0.43 Score=53.50 Aligned_cols=44 Identities=16% Similarity=0.008 Sum_probs=31.1
Q ss_pred CCCCcHHHHHHHHHHHhc----CCCcce-EEEeCCCCChHHHHHHHHHh
Q 010991 23 HAQPRPYQEKSLSKMFGN----GRARSG-IIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~----~~~~~~-il~~~tG~GKTl~~i~~~~~ 66 (496)
...-|.-|.+.+..++.. ....++ .|.++||+|||.++-.++..
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrE 804 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQL 804 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345588898888876643 222344 48999999999998776644
No 335
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.68 E-value=0.44 Score=49.41 Aligned_cols=126 Identities=9% Similarity=0.063 Sum_probs=68.1
Q ss_pred ceEEEeCCCCChHHHHHHHH----Hh--cCCcEEEEEeChH-HHHHHHHHHHHhhCCCCCcEEEEcCCcc--c-cccC-C
Q 010991 45 SGIIVLPCGAGKSLVGVSAA----CR--IKKSCLCLATNAV-SVDQWAFQFKLWSTIQDDQICRFTSDSK--E-RFRG-N 113 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~----~~--~~~~~LIl~P~~~-L~~Qw~~e~~~~~~~~~~~v~~~~g~~~--~-~~~~-~ 113 (496)
-.++.+..|+|||..++..+ .. -+.+++|+-|+.. |......++......-+.. ..+..... . .+.. +
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~-~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGIN-YEFKKSKSSMEIKILNTG 81 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh-hheeecCCccEEEecCCC
Confidence 45778999999998854433 23 3456788878765 4444445554332111110 11111100 0 0111 2
Q ss_pred CcEEEEchHHhhcccCCChhHHHHHHHHhc-CCccEEEEcCCcccCchHHHHHHHhccC---ccEEEEeecCCCC
Q 010991 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVISLTKS---HCKLGLTATLVRE 184 (496)
Q Consensus 114 ~~IiItT~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~~~~~~~l~~l~~---~~~L~LTATp~r~ 184 (496)
..|++..-. . .. +.+.+ ..++++.+|||..++...|..++.++.. ...+.+|.||...
T Consensus 82 ~~i~f~g~~-------d--~~----~~ik~~~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 82 KKFIFKGLN-------D--KP----NKLKSGAGIAIIWFEEASQLTFEDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred eEEEeeccc-------C--Ch----hHhhCcceeeeehhhhhhhcCHHHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 223332210 0 01 12222 3468999999999988888888887753 2348899999653
No 336
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.60 E-value=0.65 Score=47.08 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHhc--CCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
++|+|....+.+... .-+...++.+|.|.||+..+..++..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999888887642 223456789999999999988887654
No 337
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=0.31 Score=51.89 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 33 SLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 33 al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.+..++.+++-.+ .++.+|.|+|||.++..++..+.
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444555543334 46799999999999888877654
No 338
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.56 E-value=0.25 Score=54.08 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhcC
Q 010991 33 SLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 33 al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.+..++..++-.+ .|+.+|.|+|||.++..++..+.
T Consensus 27 ~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 27 TLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444455443223 48899999999999988887653
No 339
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.53 E-value=0.34 Score=48.66 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=33.1
Q ss_pred CCcHHHHHHHHHHHh---cCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 25 QPRPYQEKSLSKMFG---NGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~---~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.++|+|..+...+.. .++ +...++.+|.|.||+..+..++..+
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 579999999887653 332 3357788999999999998887654
No 340
>PRK09354 recA recombinase A; Provisional
Probab=93.48 E-value=0.44 Score=48.23 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHH
Q 010991 31 EKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD 82 (496)
Q Consensus 31 ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~ 82 (496)
..+++.++. +| +++-..|.+|+|+|||..++.++.. .++++++|-.--++-.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH
Confidence 457788887 65 3334567899999999998877643 4678888887766544
No 341
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.47 E-value=1.1 Score=49.20 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=25.3
Q ss_pred HHHHHhcCCC-cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 34 LSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 34 l~~~~~~~~~-~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+..++.+++- ...|+.+|.|.|||.+|..++..+.
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444555432 3467899999999999988887664
No 342
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.46 E-value=0.72 Score=51.11 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+...+.+..++..++ +...++.+|.|+|||.+|-.++..+.
T Consensus 24 e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 24 DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 333445555666553 33457899999999999888876653
No 343
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.085 Score=51.86 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=27.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
.|.++.+|||+|||+.|-+++..+.-|+-|-
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 4789999999999999999999999887653
No 344
>CHL00176 ftsH cell division protein; Validated
Probab=93.40 E-value=0.5 Score=52.03 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=27.7
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.++.++.+|+|+|||..+-+++...+.+++.+..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~ 249 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISG 249 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccH
Confidence 3578999999999999998888888777666543
No 345
>PRK04132 replication factor C small subunit; Provisional
Probab=93.37 E-value=0.35 Score=54.53 Aligned_cols=90 Identities=12% Similarity=0.257 Sum_probs=59.7
Q ss_pred EeCCCCChHHHHHHHHHhc-----CCcEEEEEeChH-HHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchH
Q 010991 49 VLPCGAGKSLVGVSAACRI-----KKSCLCLATNAV-SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (496)
Q Consensus 49 ~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~-L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~ 122 (496)
.+|.+.|||-++.+++..+ +.+++-+-++.. =+++.++.+..+....+ +
T Consensus 572 ~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-------------------~------ 626 (846)
T PRK04132 572 NLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP-------------------I------ 626 (846)
T ss_pred CCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-------------------c------
Confidence 4699999999988888776 345777777663 24555554544431110 0
Q ss_pred HhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHHHHHhccCccEEEEeecCC
Q 010991 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLGLTATLV 182 (496)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~l~~~~~L~LTATp~ 182 (496)
...++.++||||||.+... .+.+.++..+...++.|++++.
T Consensus 627 -------------------~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~ 670 (846)
T PRK04132 627 -------------------GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 670 (846)
T ss_pred -------------------CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCCh
Confidence 0024669999999999854 4556666656778888888864
No 346
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.32 E-value=0.32 Score=47.98 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=22.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc----C-CcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI----K-KSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~----~-~~~LIl~ 75 (496)
+..++++|+|+|||-++..++..+ + .++.+|.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 467788999999998876665433 2 4555554
No 347
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.32 E-value=0.21 Score=56.19 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=29.0
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
.++.++.+|+|+|||..+-+++...+.+++.+-++
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~ 521 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP 521 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 34678899999999999999998888887766653
No 348
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.23 E-value=0.41 Score=51.32 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=27.4
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.++.++.+|+|+|||..+-+++...+.+++.+..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~ 121 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 121 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence 4578999999999999998888887777665443
No 349
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.20 E-value=1 Score=45.70 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+...+.+..++..++ +...++.+|.|+|||-.+..++..+.
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 20 EHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334445555565553 23467899999999999888877653
No 350
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.15 E-value=1.9 Score=40.79 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=26.2
Q ss_pred HHHHhcCCccEEEEcCCcccCch-----HHHHHHHhcc-CccEEEEee-cCC
Q 010991 138 IEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK-SHCKLGLTA-TLV 182 (496)
Q Consensus 138 ~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~l~-~~~~L~LTA-Tp~ 182 (496)
.+.+ ...++++||.+|.+... .+-.+++.+. ....+.+|+ .++
T Consensus 92 ~~~~--~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P 141 (219)
T PF00308_consen 92 KDRL--RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPP 141 (219)
T ss_dssp HHHH--CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-T
T ss_pred hhhh--hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCC
Confidence 3444 68999999999999865 2223344332 335566665 444
No 351
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.15 E-value=1.5 Score=44.23 Aligned_cols=110 Identities=16% Similarity=0.082 Sum_probs=49.8
Q ss_pred EEEeCCCCChHHHHHHH-HHh---cCC-cEEEEEeChHHHHHH-H---HHHHHhhCCCCCcEEEE-cCCccccccCCCcE
Q 010991 47 IIVLPCGAGKSLVGVSA-ACR---IKK-SCLCLATNAVSVDQW-A---FQFKLWSTIQDDQICRF-TSDSKERFRGNAGV 116 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~-~~~---~~~-~~LIl~P~~~L~~Qw-~---~e~~~~~~~~~~~v~~~-~g~~~~~~~~~~~I 116 (496)
++.++.|+|||.++... +.. ... +.++++|+..-+.+. . ..+..+.. +...+..- ..+....+.++..|
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~nG~~i 79 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLP-SWFEIKFNEWNDRKIILPNGSRI 79 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS--TTTS--EEEE-SSEEEETTS-EE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHH-HhcCcccccCCCCcEEecCceEE
Confidence 46789999999985443 322 232 566666766544442 1 11222111 11122111 11111112333445
Q ss_pred EEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHh
Q 010991 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (496)
Q Consensus 117 iItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~ 168 (496)
.+.+.+.- ...+.+....++++++||+-.++...+...+..
T Consensus 80 ~~~~~~~~-----------~~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~ 120 (384)
T PF03237_consen 80 QFRGADSP-----------DSGDNIRGFEYDLIIIDEAAKVPDDAFSELIRR 120 (384)
T ss_dssp EEES----------------SHHHHHTS--SEEEEESGGGSTTHHHHHHHHH
T ss_pred EEeccccc-----------cccccccccccceeeeeecccCchHHHHHHHHh
Confidence 55554311 013455668999999999999987766655544
No 352
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.14 E-value=0.45 Score=54.40 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=27.6
Q ss_pred HHHHHHHHH---hcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 30 Q~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|..-+..++ ......+.++++|+|.|||.++-.++..+
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 444455544 45555699999999999999987777655
No 353
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.14 E-value=1 Score=45.82 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=26.2
Q ss_pred HHHHHHH---HHhcCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 30 QEKSLSK---MFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 30 Q~~al~~---~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|.++... ++..++ +...++.+|.|.|||..+..++..+
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 4444443 444443 2357889999999999998888765
No 354
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=93.08 E-value=0.17 Score=55.06 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=53.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeChHHHHHHHHHHHH
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
-..|-+-|..|...++... -.||.+|+|+|||++++.++..+ ..|+||+|=|...++|.-..+..
T Consensus 376 ~~ildsSq~~A~qs~ltye---lsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTYE---LSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ceeecHHHHHHHHHHhhhh---hheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 3457788999999998875 78999999999999988877543 34899999999888987766653
No 355
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.05 E-value=0.23 Score=48.51 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH---hcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 28 PYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 28 ~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
|..++.+..++ ..+ .+.+|.+|+|+|||.++..++...+.+++.++-+
T Consensus 5 ~~~~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred HHHHHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 44444444433 233 4899999999999999999988888888877643
No 356
>PRK09183 transposase/IS protein; Provisional
Probab=93.00 E-value=0.16 Score=49.50 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=27.2
Q ss_pred cceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQW 84 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw 84 (496)
.+.+|.+|+|+|||..+.+++. ..+.+++++ +...|+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQL 145 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHHH
Confidence 5899999999999998777643 334566655 334455443
No 357
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.99 E-value=0.44 Score=47.74 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---------cCCcEEEEEeChH
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---------IKKSCLCLATNAV 79 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---------~~~~~LIl~P~~~ 79 (496)
..++.++++| .+.-..|.+|+|+|||..++.++.. ...++++|..--.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 4567777765 2234458899999999998776642 1358899886553
No 358
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.97 E-value=1.1 Score=41.04 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=24.3
Q ss_pred HHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 34 l~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+...+..++ ....++.+|.|.|||..+..++..+
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444432 3467889999999999988887765
No 359
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.94 E-value=0.87 Score=46.67 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHH---HHHhcCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 29 YQEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 29 yQ~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.|.++.. .++..++ +...++.+|.|.||+..+..++..+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3555544 3445443 3357789999999999998888764
No 360
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.89 E-value=0.52 Score=49.64 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=25.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVD 82 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~ 82 (496)
...+|.+|+|+|||..+-+++..+ +.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHH
Confidence 357899999999999877666543 456666543 33444
No 361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.87 E-value=0.64 Score=44.01 Aligned_cols=46 Identities=28% Similarity=0.417 Sum_probs=34.0
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeC
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATN 77 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~ 77 (496)
.+++.++.+| .+.-..|.+++|+|||..++.++.. .+.+++++.--
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5678888765 2235678899999999998887754 35688887765
No 362
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.83 E-value=0.76 Score=49.94 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=27.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
..+|.+++|+|||..+.+++..+ +.+++++ +...+++++...+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi-taeef~~el~~al 363 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV-SSEEFTNEFINSI 363 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHHHHHHHHHHH
Confidence 47889999999999876665543 2345444 4445555544433
No 363
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.82 E-value=0.44 Score=54.33 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=23.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC--CcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~P 76 (496)
..++++|+|+|||.++-+++..+. ...++...
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 368899999999999988877663 33455444
No 364
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.79 E-value=0.84 Score=46.02 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHHhc--CCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
++|+|......+... .-+...++.+|.|.|||..+..++..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 589999998887643 223457789999999999988887654
No 365
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.78 E-value=0.48 Score=48.03 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeCh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~ 78 (496)
.+++.++.+| .+.-..|.+|.|+|||..++.++... ..++++|..--
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 3566677765 22334588999999999987776432 25889998744
No 366
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.28 Score=52.52 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=40.0
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHH
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
....++.+|+|+|||+.+-+++...+.+++-+-.. .+...|.-+..+
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGesek 322 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESEK 322 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhccccchHHH
Confidence 34788999999999999999999888888877777 788888877766
No 367
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.76 E-value=0.97 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=18.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
...+|.+|+|+|||..+-+++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999987766654
No 368
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.72 E-value=0.14 Score=46.63 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=28.0
Q ss_pred cCCCcEEEEchHHhhcccCCChhHHHHHHHHh--cCCccEEEEcCCcccCch
Q 010991 111 RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR--NREWGLLLMDEVHVVPAH 160 (496)
Q Consensus 111 ~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~--~~~~~~vIlDEaH~~~~~ 160 (496)
...++|+|++|..|.... ....+. ..+-.+||+||||.+.+.
T Consensus 117 ~~~adivi~~y~yl~~~~--------~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPS--------IRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GGG-SEEEEETHHHHSHH--------HHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred cccCCEEEeCHHHHhhHH--------HHhhhccccccCcEEEEecccchHHH
Confidence 345899999999987542 222221 245578999999999754
No 369
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.71 E-value=0.66 Score=46.37 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=27.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWA 85 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~ 85 (496)
.+.+|.+|+|+|||..+.+++..+ +.+++++.- ..++....
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~-~~l~~~lk 200 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF-PEFIRELK 200 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH-HHHHHHHH
Confidence 467888999999999988877554 445555433 34554433
No 370
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.22 Score=50.30 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=39.1
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.++.++++|+|+|||+.|=+.+...+ .+.+=+.++.|+..|+-+-++.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechhhhhhhhccchHHH
Confidence 35889999999999999888877766 6677777788999998877664
No 371
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.62 E-value=0.32 Score=50.93 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=27.5
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
..+.+|.+|+|+|||.++-+++.....+++-+..
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 3578899999999999998888887776655544
No 372
>PRK06620 hypothetical protein; Validated
Probab=92.61 E-value=0.43 Score=45.05 Aligned_cols=36 Identities=8% Similarity=0.255 Sum_probs=23.0
Q ss_pred CccEEEEcCCcccCchHHHHHHHhcc-CccEEEEeec
Q 010991 145 EWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGLTAT 180 (496)
Q Consensus 145 ~~~~vIlDEaH~~~~~~~~~~l~~l~-~~~~L~LTAT 180 (496)
..+++++||+|......+-.+++.+. ....+.+|||
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~ 121 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSS 121 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcC
Confidence 34689999999775433333444443 3456788887
No 373
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.58 E-value=0.52 Score=53.04 Aligned_cols=81 Identities=11% Similarity=0.136 Sum_probs=58.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
.|.|-|++++.. .. +..+|.+..|+|||.+.+.-+..+ ..++|+++-|+..+....+.+.+.++.
T Consensus 4 ~Ln~~Q~~av~~--~~---g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~--- 75 (726)
T TIGR01073 4 HLNPEQREAVKT--TE---GPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP--- 75 (726)
T ss_pred ccCHHHHHHHhC--CC---CCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc---
Confidence 478999999983 22 378999999999998865544432 236999999988888888888775321
Q ss_pred cEEEEcCCccccccCCCcEEEEchHHhhcc
Q 010991 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (496)
Q Consensus 98 ~v~~~~g~~~~~~~~~~~IiItT~~~l~~~ 127 (496)
. ...+.|.|+..++..
T Consensus 76 -------~-------~~~~~i~TFHs~~~~ 91 (726)
T TIGR01073 76 -------V-------AEDIWISTFHSMCVR 91 (726)
T ss_pred -------c-------cCCcEEEcHHHHHHH
Confidence 0 134778888888644
No 374
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.57 E-value=0.78 Score=48.47 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=61.3
Q ss_pred HHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010991 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (496)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~ 105 (496)
...++.++.+| .+.-.+|.+++|+|||..++.++... +.++|++..-- ...|+.....++ ++....
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rl-g~~~~~------- 150 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRL-GLPEPN------- 150 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHc-CCChHH-------
Confidence 45677777654 22345677999999999988776543 45888888643 467777666654 222111
Q ss_pred ccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 106 ~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+.+.... ....+...+...++++||||..+.+.
T Consensus 151 ----------l~~~~e~----------~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 151 ----------LYVLSET----------NWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred ----------eEEcCCC----------CHHHHHHHHHhcCCcEEEEecchhhc
Confidence 1121110 11233455555789999999998764
No 375
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.53 E-value=1.3 Score=40.17 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=38.6
Q ss_pred eEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+|.+++|+|||..+..++...+.+++++.....+-..|.+.+.+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHH
Confidence 3678899999999999998887789999999888777788776653
No 376
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.47 E-value=0.46 Score=53.45 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=24.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
..++++|+|+|||.++-+++..+..+++.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~ 515 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERF 515 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEE
Confidence 468999999999999988888776554433
No 377
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=92.39 E-value=0.65 Score=49.51 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhc----C--CCcceEEEeCCCCChHHHHHHHHH--hc-----CCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 28 PYQEKSLSKMFGN----G--RARSGIIVLPCGAGKSLVGVSAAC--RI-----KKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 28 ~yQ~~al~~~~~~----~--~~~~~il~~~tG~GKTl~~i~~~~--~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
|+|+-.+..+++- + +-+.++|..|=|-|||..+..++. .. +..+++++++..-+....+.+....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 7899888887742 1 224688889999999988544432 11 2358888998877777777776654
No 378
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.38 E-value=0.52 Score=45.79 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCcc--eEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 32 KSLSKMFGNGRARS--GIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 32 ~al~~~~~~~~~~~--~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
++++.++.+|-..+ .=|++|.|+|||-.++.++... ..++++|......-.+-..++.+-.+...
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~---- 100 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDP---- 100 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-H----
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccccc----
Confidence 36777776652122 2378999999999988776542 34799998766543332233332222211
Q ss_pred EEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCccc
Q 010991 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (496)
Q Consensus 101 ~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~ 157 (496)
.+.+..-..+-+.+...+... .......+...++.+||||-+=.+
T Consensus 101 ------~~~l~~I~v~~~~~~~~l~~~------L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 101 ------EEILDNIFVIRVFDLEELLEL------LEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp ------HHHHHTEEEEE-SSHHHHHHH------HHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ------chhhhceeeeecCCHHHHHHH------HHHHHhhccccceEEEEecchHHH
Confidence 111111111222334444332 223334455578999999986543
No 379
>PHA02244 ATPase-like protein
Probab=92.37 E-value=0.24 Score=50.34 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
+...+.+|+..+ .+.+|.+|+|+|||..+-+++..++.+++.+.
T Consensus 108 ~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 108 ETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred HHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 344445566655 48999999999999999888888888877664
No 380
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.36 E-value=0.58 Score=47.21 Aligned_cols=61 Identities=23% Similarity=0.251 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHHH---Hhc--CCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHH
Q 010991 23 HAQPRPYQEKSLSKM---FGN--GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQW 84 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~---~~~--~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw 84 (496)
...++.++..++..+ ..+ ....+.++.+|||+|||..+.+++..+ +.+|+ ..+...|+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~-y~t~~~l~~~l 226 (329)
T PRK06835 158 PLSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVI-YRTADELIEIL 226 (329)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEE-EEEHHHHHHHH
Confidence 346777777777643 221 122588999999999999987776654 33444 44545555543
No 381
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.33 E-value=0.52 Score=52.89 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHhcCCCcceEEEeCCCCChHHHHHHHHH
Q 010991 37 MFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 37 ~~~~~~~~~~il~~~tG~GKTl~~i~~~~ 65 (496)
++......+.+|++|+|+|||.++-.++.
T Consensus 201 iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 201 VLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred HHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 44444456899999999999998766654
No 382
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.29 E-value=0.26 Score=49.54 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=40.4
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHH
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L 80 (496)
...+.+.|.+.+..+...+ .+.+|+++||+|||-..-+++... ..+++++=.+.+|
T Consensus 126 ~g~~~~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 126 SKIMTEAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred cCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 4456778888888777765 588999999999998866665544 2356666666654
No 383
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.14 E-value=1.3 Score=42.52 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=24.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---------------cCCcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---------------IKKSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---------------~~~~~LIl~P 76 (496)
-++|++|.|+|||..++.++.. ...+||+++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 4789999999999998777653 1347888883
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.13 E-value=1.1 Score=47.85 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 28 PYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 28 ~yQ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
+--...++.++.+| ++...+|.+|+|+|||..++.++.. .+.++++++-- +...|.......+
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e-Es~~~i~~~~~~l 313 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE-ESRAQLLRNAYSW 313 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee-CCHHHHHHHHHHc
Confidence 33456788888876 3345677799999999998777654 45688888754 4578888888775
No 385
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.09 E-value=0.31 Score=51.84 Aligned_cols=35 Identities=29% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
..++.++.+|+|+|||+.+=+++...+.+.+.+-+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 34678999999999999998888888888777665
No 386
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.98 E-value=0.45 Score=54.28 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=24.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC--cEEEEEeCh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK--SCLCLATNA 78 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~--~~LIl~P~~ 78 (496)
..++++|+|+|||.++-+++..+.+ ..++-+..+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s 576 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMS 576 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEch
Confidence 4689999999999999888877632 334444443
No 387
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.95 E-value=0.5 Score=47.36 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=43.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeCh
Q 010991 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~ 78 (496)
.+.+.+.+--..++-.++..+ ++.+|.+++|+|||..+-.++..++.+++-|.-+.
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~ 99 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDS 99 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecC
Confidence 355677777777777777654 58999999999999999999999888776554443
No 388
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.93 E-value=1.4 Score=44.49 Aligned_cols=37 Identities=5% Similarity=0.074 Sum_probs=25.6
Q ss_pred CCccEEEEcCCcccCchHHHHHHHhc---cCccEEEEeec
Q 010991 144 REWGLLLMDEVHVVPAHMFRKVISLT---KSHCKLGLTAT 180 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~l---~~~~~L~LTAT 180 (496)
..+.++||||+|.+.......+++.+ +....+.|+++
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 46789999999999866544444444 45566667655
No 389
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.85 E-value=1.9 Score=44.12 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+...+.+..++.+++ +...++.+|.|+|||..+-.++..+.
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 23 SHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334445555565543 34677999999999988877776654
No 390
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=0.4 Score=49.57 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=38.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
++.++.+|.|+|||..+.+++.+.+....-|.|++ |..-|..+-.+
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass-LtsK~~Ge~eK 232 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESGATFFNISASS-LTSKYVGESEK 232 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhcceEeeccHHH-hhhhccChHHH
Confidence 57789999999999999999999998888888876 78877655543
No 391
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.74 E-value=1.9 Score=45.61 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHH---HHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 30 QEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 30 Q~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
|..++. .++..++ +...++.+|.|+|||.++..++..+.
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 555544 3454443 34568899999999999988887653
No 392
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.66 E-value=1 Score=45.27 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeCh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~ 78 (496)
..++.++.+| .+.-..|++|+|+|||..++.++... ..++++|..-.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4455566654 22345578999999999988887652 24788888644
No 393
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.65 E-value=1.3 Score=40.77 Aligned_cols=124 Identities=13% Similarity=0.058 Sum_probs=65.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHH-HHHHHHhhCCCCCcEEEEcCCcccccc-CCCcEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQW-AFQFKLWSTIQDDQICRFTSDSKERFR-GNAGVVV 118 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw-~~e~~~~~~~~~~~v~~~~g~~~~~~~-~~~~IiI 118 (496)
+..+|..+.|.|||-.++..+.+ .+.+|+|+==.+-- | ..|...+..++. +..+..+..-.+. .+..-
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~---~~~GE~~~l~~l~~--v~~~~~g~~~~~~~~~~~e-- 95 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA---WSTGERNLLEFGGG--VEFHVMGTGFTWETQDRER-- 95 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC---CccCHHHHHhcCCC--cEEEECCCCCcccCCCcHH--
Confidence 47888899999999998888755 35678777543321 2 223322222222 2222222110000 00000
Q ss_pred EchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch------HHHHHHHhccCccEEEEeecC
Q 010991 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKSHCKLGLTATL 181 (496)
Q Consensus 119 tT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~~~l~~l~~~~~L~LTATp 181 (496)
...... .......+.+...+|++||+||.=...+- ....++..-+...-+.|||--
T Consensus 96 -~~~~~~------~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~ 157 (191)
T PRK05986 96 -DIAAAR------EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG 157 (191)
T ss_pred -HHHHHH------HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC
Confidence 000110 11233445666789999999998776643 333344444445678899974
No 394
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.61 E-value=1.8 Score=47.17 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=73.9
Q ss_pred cceEEEeCCCCChHHHHHHHHH----h-cCCcEEEEEeChHHHHHHHHHHHHhhC--CCCCcEEEEcCCccc--ccc-CC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC----R-IKKSCLCLATNAVSVDQWAFQFKLWST--IQDDQICRFTSDSKE--RFR-GN 113 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~----~-~~~~~LIl~P~~~L~~Qw~~e~~~~~~--~~~~~v~~~~g~~~~--~~~-~~ 113 (496)
+.-++..|==.|||......+. . .+..+++++|...-.+...+++..++. .++..+....|. .- .+. +.
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~nG~ 333 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPDGS 333 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecCCC
Confidence 4677888999999986433222 2 366899999988877777776655321 233334333442 11 112 21
Q ss_pred -CcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccC--ccEEEEeecC
Q 010991 114 -AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS--HCKLGLTATL 181 (496)
Q Consensus 114 -~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~--~~~L~LTATp 181 (496)
..|.+.|- .+. ..+....++++|+|||+.++...+..++-.+.. ...|.+|-|-
T Consensus 334 kstI~FaSa---rnt-----------NsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 334 RSTIVFASS---HNT-----------NGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred ccEEEEEec---cCC-----------CCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCC
Confidence 23333311 110 123357899999999999999988888765533 3556666554
No 395
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.59 E-value=0.38 Score=47.86 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHH
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L 80 (496)
+-+-|.+.+..+...+ ++.+|+++||+|||-..-+++..+ ..+++++-.+.++
T Consensus 117 ~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 4445666677666654 589999999999998876666554 3466666665554
No 396
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=91.56 E-value=0.51 Score=42.61 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=39.0
Q ss_pred cCCCeEEEEeccHHHHHHHHHHcCC-------CeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 266 QRGDKIIVFADNLFALTEYAMKLRK-------PMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 266 ~~g~kiIVF~~~~~~~~~l~~~L~~-------~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
..+.++|||+.+-..++.+.+.+.. .++.- ...++..+++.|+.+ .-.+++++
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~-~~~il~~v 66 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRG-EGAILLAV 66 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCS-SSEEEEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhc-cCeEEEEE
Confidence 4457999999999999999999862 33332 255789999999997 44555554
No 397
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.55 E-value=2.6 Score=43.77 Aligned_cols=107 Identities=19% Similarity=0.122 Sum_probs=56.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc----CCcEEEEE-eChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA-TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~-P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiIt 119 (496)
-.++++|+|+|||-++..++... +.++.++. .+--....| ++..|....+..+ +
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~----------------~--- 283 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE--QLKRYADTMGMPF----------------Y--- 283 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHH--HHHHHHHhcCCCe----------------e---
Confidence 36688999999999987776532 33444433 321112233 4555432221111 0
Q ss_pred chHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-----HHHHHHHhc----cCccEEEEeecCC
Q 010991 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLT----KSHCKLGLTATLV 182 (496)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~l----~~~~~L~LTATp~ 182 (496)
+...+ ....+.+....+++||+|=+-+.... .+.+++..+ +....|.|+||--
T Consensus 284 ~~~~~----------~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 284 PVKDI----------KKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred ehHHH----------HHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 01101 12233444468899999987766422 334444433 1235688899865
No 398
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.53 E-value=1.8 Score=43.53 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHHh---cCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 25 QPRPYQEKSLSKMFG---NGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~---~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.++|+|......+.. .++ +...++.+|.|.||+..+..++..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 578888888776543 332 3457788999999999988887654
No 399
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.50 E-value=0.88 Score=46.06 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHh---cCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 25 QPRPYQEKSLSKMFG---NGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~---~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.++|+|....+.+.. .++ +...++.+|.|.||+..+..++..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 468888888887643 333 3355688999999999998887654
No 400
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.45 E-value=2.1 Score=44.66 Aligned_cols=32 Identities=16% Similarity=-0.010 Sum_probs=22.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P 76 (496)
-..+++++|+|||-++..++..+ +.++++++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 45688999999998876665443 456666654
No 401
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.44 E-value=2.8 Score=41.01 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=59.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe-C--hHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N--AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P-~--~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~Ii 117 (496)
....+++++|+|||.....++..+ +.++.++.. + ...+.||...... .++ .+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~~--------------------~~~ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-IGF--------------------EVI 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh-cCc--------------------eEE
Confidence 467888999999998765555443 345555543 2 2457777654432 111 111
Q ss_pred E-EchHHhhcccCCChhHHHHHHHHhc-CCccEEEEcCCcccCc--hH---HHHHHHhccCc-cEEEEeecCC
Q 010991 118 V-TTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA--HM---FRKVISLTKSH-CKLGLTATLV 182 (496)
Q Consensus 118 I-tT~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~--~~---~~~~l~~l~~~-~~L~LTATp~ 182 (496)
. .++..+. ..+..+.. .++++||+|-+=+... .. +.+++...... ..|.|+||-.
T Consensus 135 ~~~~~~~l~----------~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 135 AVRDEAAMT----------RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred ecCCHHHHH----------HHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 1 2233222 22333322 4789999999977752 22 33333333333 3566888864
No 402
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.38 E-value=0.68 Score=52.95 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=51.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC--CcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchH
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~ 122 (496)
..++++|+|+|||.+|-+++..+. ...+|.+..+..... ....+..|.|+..+ |-.. -+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~--~~~~~LiG~~pgy~----g~~~-------------~g 660 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK--HSVSRLVGAPPGYV----GYEE-------------GG 660 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh--hhHHHHhCCCCccc----ccch-------------hH
Confidence 578999999999999988876653 233444454444332 11222333222111 0000 01
Q ss_pred HhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc
Q 010991 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (496)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l 169 (496)
.+ .+.+....+++|++||++.+....+..++..+
T Consensus 661 ~l-------------~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 661 YL-------------TEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred HH-------------HHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 11 12233356789999999988866555555544
No 403
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.13 E-value=0.32 Score=52.40 Aligned_cols=44 Identities=32% Similarity=0.508 Sum_probs=34.3
Q ss_pred cccCCCCCCcHHHHHHHHHHH---hcCCCcceEEEeCCCCChHHHHHHH
Q 010991 18 MELKPHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSA 63 (496)
Q Consensus 18 ~~l~~~~~lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~ 63 (496)
+.+...++|++.|.+-++.++ ..| +-||+-.|||+|||+..|..
T Consensus 8 ~~F~fPy~PYdIQ~~lM~elyrvLe~G--kIgIfESPTGTGKSLSLiCa 54 (821)
T KOG1133|consen 8 IEFPFPYTPYDIQEDLMRELYRVLEEG--KIGIFESPTGTGKSLSLICA 54 (821)
T ss_pred cccCCCCCchhHHHHHHHHHHHHHhcC--CeeeeeCCCCCCchHHHHHH
Confidence 445578899999999887754 444 48999999999999985444
No 404
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.99 E-value=0.43 Score=47.98 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=38.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHH
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L 80 (496)
..+-+.|.+.+..+...+ ++.+|+++||+|||-..-+++... ..++++|-.+.++
T Consensus 131 g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 345567888887766654 589999999999997665555442 2466666666654
No 405
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=2.1 Score=43.88 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcC-CCcc-eEEEeCCCCChHHHHHHHHHhc--CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 29 YQEKSLSKMFGNG-RARS-GIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 29 yQ~~al~~~~~~~-~~~~-~il~~~tG~GKTl~~i~~~~~~--~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
-...-++.++.+| -+++ .+|.+++|.|||-.-+-+++.+ .+++|+|+--- ...||+-...+. +++.
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEE-S~~QiklRA~RL-~~~~-------- 146 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEE-SLQQIKLRADRL-GLPT-------- 146 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCc-CHHHHHHHHHHh-CCCc--------
Confidence 3455667778775 2234 4555899999998766666554 34899988754 589999999885 4432
Q ss_pred CccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc
Q 010991 105 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (496)
Q Consensus 105 ~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (496)
.++.+.....+ +.+...+...+++++|+|=.+.+-+
T Consensus 147 ---------~~l~l~aEt~~----------e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 147 ---------NNLYLLAETNL----------EDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred ---------cceEEehhcCH----------HHHHHHHHhcCCCEEEEeccceeec
Confidence 23555444333 3556677778999999999998874
No 406
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.92 E-value=0.82 Score=52.38 Aligned_cols=93 Identities=15% Similarity=0.261 Sum_probs=52.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC--CcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchH
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~ 122 (496)
..++.+|+|+|||.+|-+++..+. ...++.+..+..... ....++.+.|+..+ .|+
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~--~~~~~l~g~~~g~~--------------------g~~ 654 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK--HSVARLIGAPPGYV--------------------GYE 654 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc--chHHHhcCCCCCcc--------------------Ccc
Confidence 578999999999999988887653 234444554433221 11222223222111 010
Q ss_pred HhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc
Q 010991 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (496)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l 169 (496)
. ...+...+....+.+|++||++.+....+..++..+
T Consensus 655 ~----------~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 655 E----------GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred c----------ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 0 001123344467789999999998876655555544
No 407
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.55 E-value=0.79 Score=43.39 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=41.7
Q ss_pred HHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.++.++.+| .+...+|.+++|+|||..++.++.. .+.++++++... ..++..+.+..+
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHc
Confidence 567777654 3346677899999999998777643 366888887755 467777777664
No 408
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.52 E-value=2.1 Score=41.84 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHhc--CCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 27 RPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 27 r~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
|+...+.+..++.. ...+-+.|+++.|.|||..|..++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 44556666666655 33456778899999999999888755
No 409
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.46 E-value=0.93 Score=46.68 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=21.0
Q ss_pred CCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 41 GRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+.+..+.|++|+|+|||..+-.++...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 344689999999999998776666554
No 410
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.40 E-value=3.3 Score=41.52 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 33 SLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 33 al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+...+..++ +...++.+|.|.||+..+..++..+
T Consensus 15 ~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 15 LLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444454443 4578899999999999998888765
No 411
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.09 E-value=2.9 Score=42.90 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=29.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe-C-h-HHHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N-A-VSVDQWAFQFK 89 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P-~-~-~L~~Qw~~e~~ 89 (496)
+..++++|+|+|||-++..++..+ +.++.+++- + + .-++||..-..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhh
Confidence 466788999999998866665433 445655553 2 2 23667765433
No 412
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.01 E-value=3.5 Score=41.23 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCCcc-eEEEeCCCCChHHHHHHHHHhc
Q 010991 28 PYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+...+.+..++..++-.+ .++.+|-|.|||..+..++..+
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 445555666676654334 4789999999999988888765
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.86 E-value=3.1 Score=44.55 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=21.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~ 75 (496)
+...+++|+|+|||-++..++... ++++.++.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 567788999999998865555432 24565554
No 414
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.82 E-value=1.3 Score=43.09 Aligned_cols=34 Identities=21% Similarity=0.069 Sum_probs=26.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATN 77 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~ 77 (496)
.-.+|++++|+|||..++.++.. .+.++++++--
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45677899999999998877654 35689998843
No 415
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=89.82 E-value=0.86 Score=44.27 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=40.2
Q ss_pred HHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHH
Q 010991 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
+..++.+| .++..+|.+++|+|||+-++.++.. .+.|+++|+... ...+..+.+..
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e-~~~~l~~~~~~ 72 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE-SPEELLENARS 72 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC-CHHHHHHHHHH
Confidence 55666653 3457788899999999998888765 356899988754 35556666655
No 416
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.82 E-value=1.8 Score=39.07 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=21.9
Q ss_pred eEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
.++.+++|+|||.++..++..+ +.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4788999999999987776553 44555544
No 417
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=89.79 E-value=1 Score=48.00 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=28.5
Q ss_pred CCccEEEEcCCcccCchHHHHHHHhccC---ccEEEEeec
Q 010991 144 REWGLLLMDEVHVVPAHMFRKVISLTKS---HCKLGLTAT 180 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~l~~---~~~L~LTAT 180 (496)
.++.+.||||+|.+....|..+++.+.. +-++.|-.|
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 5788999999999999999999988843 334444444
No 418
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.77 E-value=1.1 Score=40.07 Aligned_cols=125 Identities=14% Similarity=0.050 Sum_probs=62.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEch
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~ 121 (496)
-..|--++|.|||-.++..+.+ .+.+++++-=.+.- ....|..-+..++. +..+..+....+... + ..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~--~~~gE~~~l~~l~~--v~~~~~g~~~~~~~~-~----~~ 74 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG--WKYGELKALERLPN--IEIHRMGRGFFWTTE-N----DE 74 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC--CccCHHHHHHhCCC--cEEEECCCCCccCCC-C----hH
Confidence 3455578899999998777654 45678774332221 01223222222332 333322221111000 0 00
Q ss_pred HHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc------hHHHHHHHhccCccEEEEeecC
Q 010991 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFRKVISLTKSHCKLGLTATL 181 (496)
Q Consensus 122 ~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~------~~~~~~l~~l~~~~~L~LTATp 181 (496)
+..... ..........+....+++||+||+=...+ .....+++.-+...-+.|||--
T Consensus 75 ~~~~~a---~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~ 137 (159)
T cd00561 75 EDIAAA---AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN 137 (159)
T ss_pred HHHHHH---HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 111000 01122333455567999999999877643 2344455554555668888864
No 419
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=89.75 E-value=1.9 Score=43.10 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=32.0
Q ss_pred HHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeCh
Q 010991 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (496)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~ 78 (496)
.++.++.+| .+.-..|++|+|+|||..++.++... .+++++|..-.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 455666655 22334588999999999988887652 34788888654
No 420
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.72 E-value=0.52 Score=40.83 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=26.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeCh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~ 78 (496)
+.+|.+|+|+|||..+-.++..+..+++.+.-+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~ 34 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSS 34 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence 3689999999999999888888877776655443
No 421
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.69 E-value=0.88 Score=48.60 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=44.7
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+++.++.+| +++..+|.+|+|+|||..++.++.. .+.++|+|+-- +-..++.+.+..+
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~ 72 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSF 72 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHc
Confidence 5677788765 4567888899999999999888654 25789998864 4567777777765
No 422
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=0.38 Score=49.30 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=29.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L 80 (496)
.|.++.+|||+|||+.+-+++.-+..|+.| |.-.+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaI-cDcTtL 262 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAI-CDCTTL 262 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEE-ecccch
Confidence 489999999999999999999988888654 444433
No 423
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.60 E-value=1.9 Score=49.26 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=28.4
Q ss_pred HHHHHHHHHh---cCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 30 QEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 30 Q~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|.+-+..++. .+...+.+|++|+|+|||.++-.++..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 6666666553 5455689999999999998877766654
No 424
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=89.57 E-value=1.6 Score=44.21 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=24.3
Q ss_pred HHHHHHHHHh---cCCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 30 QEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 30 Q~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
|.++...++- ....++.+|.++.|+|||..+-+++..
T Consensus 9 q~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 9 QDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 5666555432 212357899999999999886555543
No 425
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=1 Score=48.28 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
..++.++.+|+|+|||..|=+++.+++-|++=|.-+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp 257 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP 257 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecch
Confidence 446788899999999999999999999888766554
No 426
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=89.48 E-value=1.9 Score=43.75 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=32.2
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeChH
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAV 79 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~~ 79 (496)
..++.++.+| ...-..|++++|+|||..++.++... .+++++|..-..
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 3566666654 22345578999999999987766431 237888887554
No 427
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.20 E-value=0.71 Score=47.79 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=16.9
Q ss_pred cceEEEeCCCCChHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSA 63 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~ 63 (496)
.|.++.+|+|+|||.++.++
T Consensus 210 ~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 59999999999999876553
No 428
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.17 E-value=4.3 Score=36.88 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=31.3
Q ss_pred HHHHHHhcCCccEEEEcCCcccCc------hHHHHHHHhccCccEEEEeecC
Q 010991 136 KIIEEIRNREWGLLLMDEVHVVPA------HMFRKVISLTKSHCKLGLTATL 181 (496)
Q Consensus 136 ~~~~~l~~~~~~~vIlDEaH~~~~------~~~~~~l~~l~~~~~L~LTATp 181 (496)
...+.+....+++||+||+=...+ .....+++.-+...-+.|||.-
T Consensus 88 ~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~ 139 (173)
T TIGR00708 88 HAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG 139 (173)
T ss_pred HHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC
Confidence 334556668999999999975543 2344455555555678899974
No 429
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.10 E-value=1.5 Score=49.47 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=25.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
++.+|.+|+|+|||..+-+++...+.+++.+..
T Consensus 213 ~giLL~GppGtGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEec
Confidence 578899999999999988877777766655443
No 430
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=89.05 E-value=0.52 Score=46.99 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=31.1
Q ss_pred cEEEEcCCcccCchHHHHHHHhccCccEEEEeecCCCCc
Q 010991 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185 (496)
Q Consensus 147 ~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTATp~r~d 185 (496)
.+||+||||..-.......+.++....+...||.+.+-|
T Consensus 245 AfVIlDEaQNtT~~QmKMfLTRiGf~skmvItGD~tQiD 283 (348)
T COG1702 245 AFVILDEAQNTTVGQMKMFLTRIGFESKMVITGDITQID 283 (348)
T ss_pred eEEEEecccccchhhhceeeeeecCCceEEEEcCccccc
Confidence 489999999965556666778888888888999987544
No 431
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=88.91 E-value=2.7 Score=44.77 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=46.1
Q ss_pred CCCCCCcHHHHHHHHHHHhc-----C--CCcceEEEeCCCCChHHHHHHHHHh-------cCCcEEEEEeChHHHHHHHH
Q 010991 21 KPHAQPRPYQEKSLSKMFGN-----G--RARSGIIVLPCGAGKSLVGVSAACR-------IKKSCLCLATNAVSVDQWAF 86 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~-----~--~~~~~il~~~tG~GKTl~~i~~~~~-------~~~~~LIl~P~~~L~~Qw~~ 86 (496)
...+.|-|||.-.+..+++- + +-.-++|..|=|-|||-.+..++.. .+..+.|++|+..-..+-..
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred CCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhH
Confidence 34568999999999988742 1 1235789999999999875544322 24578999997654444333
Q ss_pred HH
Q 010991 87 QF 88 (496)
Q Consensus 87 e~ 88 (496)
..
T Consensus 137 ~a 138 (546)
T COG4626 137 PA 138 (546)
T ss_pred HH
Confidence 33
No 432
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=88.89 E-value=0.62 Score=47.18 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=26.1
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCC--cEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~--~~LIl~P 76 (496)
++..++++|+|+|||..|++++..++. |+..++-
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isg 85 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISG 85 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEG
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccc
Confidence 357888899999999999999999975 6666654
No 433
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.80 E-value=3.3 Score=40.26 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=30.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
.-.+|.+++|+|||..+..++... +.+++++.--- -..++...+.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~ 79 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLL 79 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHH
Confidence 467889999999999877665542 56888887533 2444544443
No 434
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=88.70 E-value=0.69 Score=41.98 Aligned_cols=47 Identities=19% Similarity=0.064 Sum_probs=39.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..+|.+++|+|||..+..++...+.+++++.+....-.+|.+.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHH
Confidence 46788999999999999998888888899988777777787777653
No 435
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.60 E-value=0.75 Score=49.13 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeChHHHHHHHHHHHH
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
+.+-|-++++ .....-.+|.+..|||||-+|+-=++.+ .+++||+.|+++..+-...-+-.
T Consensus 213 IQkEQneIIR----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPe 282 (747)
T COG3973 213 IQKEQNEIIR----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPE 282 (747)
T ss_pred hhHhHHHHHh----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchh
Confidence 3445555555 2222366777999999999986544332 34799999999877755554443
No 436
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.54 E-value=6.8 Score=39.34 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=22.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
.-..+++|+|+|||-++..++..+ +++++++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345677999999998876665443 45677665
No 437
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.53 E-value=7.1 Score=37.57 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=25.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC--CcEEEEEeChHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVD 82 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~P~~~L~~ 82 (496)
+-+.++++.|+|||.+.=++..... ..++|+.|...+..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~ 92 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSD 92 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhH
Confidence 3677889999999999775555543 24444555544333
No 438
>PTZ00035 Rad51 protein; Provisional
Probab=88.37 E-value=2.4 Score=43.00 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=31.2
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHH--h-------cCCcEEEEEeCh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC--R-------IKKSCLCLATNA 78 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~--~-------~~~~~LIl~P~~ 78 (496)
..++.++.+| .+.-..|.+|.|+|||..+..++. . ..+++++|..-.
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 4577777765 223455889999999998766653 2 234677777543
No 439
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=0.44 Score=52.58 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
-.+.++|++|+|+|||+.|-+.|...+-|++-++-
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSG 377 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 377 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCceeeech
Confidence 34689999999999999999999999999886654
No 440
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=88.29 E-value=1.4 Score=45.21 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
++++.++--+++.+++|++|.|+|||..+-.++..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~ 192 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANS 192 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHH
Confidence 34443332345568999999999999776555543
No 441
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.18 E-value=0.88 Score=47.74 Aligned_cols=147 Identities=10% Similarity=0.103 Sum_probs=86.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCCCcceE-EEeCCCCChHHH---HHHHHHhc--------------------------
Q 010991 18 MELKPHAQPRPYQEKSLSKMFGNGRARSGI-IVLPCGAGKSLV---GVSAACRI-------------------------- 67 (496)
Q Consensus 18 ~~l~~~~~lr~yQ~~al~~~~~~~~~~~~i-l~~~tG~GKTl~---~i~~~~~~-------------------------- 67 (496)
++-|+...|.+-|.+-+..|++.. +.+ .....+.|+-.- ++-++-++
T Consensus 209 ~~~K~s~pltalQ~~L~~~m~~Yr---Dl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~ 285 (698)
T KOG2340|consen 209 VDQKKSEPLTALQKELFKIMFNYR---DLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDES 285 (698)
T ss_pred ccccccCcchHHHHHHHHHHHhhh---hhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchh
Confidence 344667789999999999887764 221 223445566333 33333211
Q ss_pred -------CCcEEEEEeChHHHHHHHHHHHHhh-CCCCCcE---------EEEcC---------------------Ccccc
Q 010991 68 -------KKSCLCLATNAVSVDQWAFQFKLWS-TIQDDQI---------CRFTS---------------------DSKER 109 (496)
Q Consensus 68 -------~~~~LIl~P~~~L~~Qw~~e~~~~~-~~~~~~v---------~~~~g---------------------~~~~~ 109 (496)
+.+||||||+++.+....+-|...+ |....++ ..|+| +..+.
T Consensus 286 frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~ 365 (698)
T KOG2340|consen 286 FRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDA 365 (698)
T ss_pred hhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcch
Confidence 1159999999999988888887763 3222111 11222 21111
Q ss_pred c----------------cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc
Q 010991 110 F----------------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (496)
Q Consensus 110 ~----------------~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l 169 (496)
+ -...+|+|++|=-|........+-..-.++| ..+.++|+|-+|.+....|..++..+
T Consensus 366 FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfL--SSIEl~iIDQa~~~l~QNwEhl~~if 439 (698)
T KOG2340|consen 366 FRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFL--SSIELLIIDQADIMLMQNWEHLLHIF 439 (698)
T ss_pred hhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhh--hhhhhhhhhhHHHHHHhhHHHHHHHH
Confidence 1 0347899999855544332111222334566 56778999999999988777666544
No 442
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=88.17 E-value=0.53 Score=46.70 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~L 72 (496)
-.+|++||++|||-.++.++...+..++
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~eII 32 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGEII 32 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 4688999999999999999999887543
No 443
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=88.15 E-value=1.3 Score=40.95 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=13.1
Q ss_pred EEEeCCCCChHHHHHHH
Q 010991 47 IIVLPCGAGKSLVGVSA 63 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~ 63 (496)
++.+.+|+|||+.++..
T Consensus 4 ~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 4 LITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEE--TTSSHHHHHHHH
T ss_pred EEEcCCCCcHhHHHHHH
Confidence 67899999999988776
No 444
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.11 E-value=1.5 Score=41.24 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=33.3
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P 76 (496)
.+++.++.+| .+.-..|.+++|+|||..++.++... +.+++++..
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4677788765 22346788999999999988887653 568888854
No 445
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.10 E-value=4.1 Score=44.80 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHhcC-----CCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGNG-----RARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~-----~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
..+.+.+.+..|+... ..+-.+|.+|+|+|||-++-.++..+
T Consensus 88 ~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 88 VHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555666676542 11237889999999998776665543
No 446
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=88.09 E-value=2.7 Score=38.04 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=51.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT 120 (496)
.+++|.+++|+||+++|-++-... .+|++.|-.. .+-.++.+. ..+|... ..++|.... .
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~-~~~~~~~e~--~LFG~~~---~~~~~~~~~-----------~ 85 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCA-ALPEELLES--ELFGHEK---GAFTGARSD-----------K 85 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETT-TS-HHHHHH--HHHEBCS---SSSTTTSSE-----------B
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehh-hhhcchhhh--hhhcccc---ccccccccc-----------c
Confidence 589999999999999987766543 2455555554 444443322 1223211 111122111 1
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~ 170 (496)
.+.| ..-+=|.++|||++.++-..-.+++..+.
T Consensus 86 ~G~l-----------------~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 86 KGLL-----------------EQANGGTLFLDEIEDLPPELQAKLLRVLE 118 (168)
T ss_dssp EHHH-----------------HHTTTSEEEEETGGGS-HHHHHHHHHHHH
T ss_pred CCce-----------------eeccceEEeecchhhhHHHHHHHHHHHHh
Confidence 1222 23577899999999999776665666553
No 447
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.93 E-value=1.1 Score=47.18 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
-+.|+|.+.+..++...+ +=.++.+|||||||.+-.+++..+..
T Consensus 241 g~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 241 GMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 358889999998887642 34566699999999887777666543
No 448
>PRK05973 replicative DNA helicase; Provisional
Probab=87.66 E-value=1.3 Score=42.35 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=34.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.-.+|.+++|+|||..++.++.. .+.++++++---. ..|..+.+..+
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 35677899999999998877654 3668888875443 56666666664
No 449
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=87.05 E-value=1.7 Score=48.22 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=28.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
++.++++|+|+|||..+-+++...+.+++.+.++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~ 219 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 219 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehH
Confidence 4688999999999999988888888887766553
No 450
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=86.92 E-value=1.9 Score=47.84 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=41.2
Q ss_pred HHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcCC------CeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK------PMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 256 l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~~------~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
...|..... ..+.+++||+.+-..++.+.+.+.. ...+|..+ +..++++|+.+.+.-++|++.
T Consensus 468 ~~~i~~~~~-~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~g 536 (654)
T COG1199 468 AAYLREILK-ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGG 536 (654)
T ss_pred HHHHHHHHh-hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeec
Confidence 344444444 4455999999999999999999862 23455554 458899998763323444433
No 451
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=86.86 E-value=2.2 Score=40.45 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHH
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..++.++.+| ++...+|.+++|+|||..+..++. ..+.++++++.-. ...+..+....
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~-~~~~i~~~~~~ 69 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE-SRESIIRQAAQ 69 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHH
Confidence 4677777554 334677889999999998776553 3356787777533 34555555444
No 452
>PLN02165 adenylate isopentenyltransferase
Probab=86.82 E-value=0.68 Score=46.53 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=24.4
Q ss_pred hcCCCcceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 39 GNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 39 ~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
.|..+.-.+|++|||+|||-++..++..++.
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 4444456888999999999999998887664
No 453
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=86.80 E-value=1 Score=45.27 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=30.9
Q ss_pred HHHHHHHH------HHhcC--CCcceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 29 YQEKSLSK------MFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 29 yQ~~al~~------~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
-|.+|=.+ |...+ .++..++++|+|+|||..|+.++..++.
T Consensus 43 GQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 43 GQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred chHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 47777655 33332 2356788899999999999999999875
No 454
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=86.80 E-value=3.5 Score=46.28 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHH
Q 010991 31 EKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSV 81 (496)
Q Consensus 31 ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~ 81 (496)
...++.++. +| .+.-..|.+|+|+|||..++.++. ..+++++++-+--++.
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~ 101 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD 101 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh
Confidence 356777887 44 334566889999999999876654 4467888888766654
No 455
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=86.79 E-value=1.9 Score=36.89 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=31.5
Q ss_pred EEeCCCCChHHHHHHHHHhcCC-----c------EEEEEeChHHHHHHHHHHHHhh
Q 010991 48 IVLPCGAGKSLVGVSAACRIKK-----S------CLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 48 l~~~tG~GKTl~~i~~~~~~~~-----~------~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
+.++||+|||.++-.++..+.+ + ...-.|...-+.+..++++.|.
T Consensus 58 fHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred eecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 3489999999998888776421 1 2233466667788888888874
No 456
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=86.70 E-value=2.4 Score=42.83 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=51.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT 120 (496)
..++|.+++|+||+.+|-++-... ..|++.|-.. .+-..|.+.. -| +. .-+.|+|.....
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~-~~~~~~l~~~-lf-G~---~~g~~~ga~~~~----------- 85 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCA-ALSENLLDSE-LF-GH---EAGAFTGAQKRH----------- 85 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCC-CCChHHHHHH-Hh-cc---ccccccCccccc-----------
Confidence 489999999999999876654432 2455554433 3333333221 12 21 112333332110
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~ 170 (496)
.+ .+...+=+.++|||++.++...-.+++..+.
T Consensus 86 ~G-----------------~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~ 118 (329)
T TIGR02974 86 QG-----------------RFERADGGTLFLDELATASLLVQEKLLRVIE 118 (329)
T ss_pred CC-----------------chhhCCCCEEEeCChHhCCHHHHHHHHHHHH
Confidence 01 1111345799999999999776555655543
No 457
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=86.70 E-value=0.98 Score=37.87 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=21.1
Q ss_pred eEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
.+|++++|+|||-++-.++..++-++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 47899999999999888888775443
No 458
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=86.41 E-value=1.2 Score=40.98 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=32.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
...+-+.|.+.+...+..+ ...+|++|+|+|||-..-+++...
T Consensus 7 ~g~~~~~~~~~l~~~v~~g--~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 7 QGTFSPLQAAYLWLAVEAR--KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred cCCCCHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456678888898888765 589999999999997755554443
No 459
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=86.40 E-value=12 Score=36.76 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=22.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
+-.++++|+|+|||-++..++..+ +.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 356677999999998876666443 45676665
No 460
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=86.11 E-value=4.9 Score=39.36 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+..++.++...+.++.+|+|+|||-..-.++..+
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 34445555433588999999999997765555443
No 461
>PRK10867 signal recognition particle protein; Provisional
Probab=85.83 E-value=2.2 Score=44.68 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=27.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEe--Ch-HHHHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLAT--NA-VSVDQWAF 86 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P--~~-~L~~Qw~~ 86 (496)
-.++++++|+|||-++..++..+ +.++++|+- .+ ...+||..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~ 150 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKT 150 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHH
Confidence 46788999999999877776543 456666553 12 23456543
No 462
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.77 E-value=5.4 Score=44.67 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=16.2
Q ss_pred ceEEEeCCCCChHHHHHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~ 65 (496)
-..+++|+|+|||-+...++.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 456889999999987655553
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=85.68 E-value=1.5 Score=44.51 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=27.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC--CcEEEEEeChHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVS 80 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~P~~~L 80 (496)
.+.+|++|||+|||-..-+++..+. .+++.+-++.+|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 5899999999999987766666554 366666666654
No 464
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=85.56 E-value=1.5 Score=42.83 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-+.+.|.+.+..++... .+..+|++|||+|||-..-+++..+.
T Consensus 63 g~~~~~~~~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 63 GLKPENLEIFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHHHHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 35778888888777643 24678999999999987766666553
No 465
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=85.54 E-value=1.4 Score=42.31 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHH
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~ 82 (496)
.+++++..+|+|+|||..|=+++...+.|.|.+-- ..|+-
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vka-t~liG 189 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKA-TELIG 189 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEech-HHHHH
Confidence 45789999999999999999988888877665444 34544
No 466
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=85.44 E-value=1 Score=40.77 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~L 72 (496)
.+.+++++||+|||-++-.++..++-+++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 47899999999999999999988876543
No 467
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.38 E-value=6.7 Score=40.93 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=16.7
Q ss_pred cceEEEeCCCCChHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~ 65 (496)
+...+++|+|+|||-+...++.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4677889999999977654443
No 468
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=85.38 E-value=9.8 Score=37.62 Aligned_cols=37 Identities=14% Similarity=-0.057 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+.+...+..++ +...++.+|-|.||+.+|..++..+
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 344555555543 3456688999999999999988765
No 469
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=85.20 E-value=1.9 Score=43.69 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=56.1
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCC---cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 20 LKPHAQPRPYQEKSLSKMFGNGRA---RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~~~~---~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
+.+.+..|.+|...+...+.+... ...+|.+..|+|||.+.-.+....+.+.+++++-- +..|+.-+.+.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e--cft~~~lle~IL 77 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE--CFTYAILLEKIL 77 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH--hccHHHHHHHHH
Confidence 567888999999999988876521 12378899999999999999999988999999843 455776666654
No 470
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=84.94 E-value=4.2 Score=38.67 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCCCChHHHHHHHHHhc---CCcEEEEE--eChHHHHHHHHHHHH
Q 010991 51 PCGAGKSLVGVSAACRI---KKSCLCLA--TNAVSVDQWAFQFKL 90 (496)
Q Consensus 51 ~tG~GKTl~~i~~~~~~---~~~~LIl~--P~~~L~~Qw~~e~~~ 90 (496)
-=|+|||-.++.++..+ +.+|.+|= |.+.|. .|.+...+
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~-~W~~~a~~ 53 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQPLA-KWAENAQR 53 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH-HHHHhccc
Confidence 35999998887777654 55665553 777765 58665544
No 471
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.78 E-value=3.8 Score=42.92 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=33.4
Q ss_pred EEEeCCCCChHHHHHHHHHhc--C---CcEEEEEeChHHHHHHHHHHHHhh
Q 010991 47 IIVLPCGAGKSLVGVSAACRI--K---KSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~~~~~--~---~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
.|.+=.|+|||.+-..-++.+ + -+++|-+=|+.|..+++.-..+|+
T Consensus 180 rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 180 RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 355667999998844444433 2 268999999999999888777765
No 472
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=84.64 E-value=3.4 Score=43.34 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=23.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P 76 (496)
...++++++|+|||.++..++..+ +.++++++.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 457788999999999987776544 345665553
No 473
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=84.48 E-value=4.2 Score=42.61 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=22.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc----CCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~ 75 (496)
-.++++++|+|||.++..++..+ +.++++++
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47788999999999977666542 34565555
No 474
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=84.35 E-value=1.4 Score=43.49 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=33.4
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHH
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Q 83 (496)
.+..++|.+|.|.|||+++-+.+++++-..|.++- ++|+..
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s-s~lv~k 205 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS-SALVDK 205 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH-hhhhhh
Confidence 34578899999999999999999999988877665 456554
No 475
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.24 E-value=15 Score=42.24 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=25.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
+-.+|.+|.|.|||.....++...+ ++.++.-
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 4678899999999988877776655 7777754
No 476
>PRK10436 hypothetical protein; Provisional
Probab=84.21 E-value=1.8 Score=45.82 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-+-+.|.+.+..++... .+-.++++|||+|||-+..+++..+.
T Consensus 201 G~~~~~~~~l~~~~~~~-~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 201 GMTPAQLAQFRQALQQP-QGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CcCHHHHHHHHHHHHhc-CCeEEEECCCCCChHHHHHHHHHhhC
Confidence 46777888888776543 24678889999999987666666553
No 477
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=84.15 E-value=0.65 Score=45.90 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=28.3
Q ss_pred CCccEEEEcCCcccCch---HHHHHHHhccCccEEEEeec
Q 010991 144 REWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLGLTAT 180 (496)
Q Consensus 144 ~~~~~vIlDEaH~~~~~---~~~~~l~~l~~~~~L~LTAT 180 (496)
..|.+||+|||+.+... ..|+++..+....++.+-+-
T Consensus 130 ~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n 169 (360)
T KOG0990|consen 130 AAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISN 169 (360)
T ss_pred CceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEecc
Confidence 37889999999999843 57778888888777764433
No 478
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=84.12 E-value=0.97 Score=39.19 Aligned_cols=40 Identities=13% Similarity=0.015 Sum_probs=30.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Q 83 (496)
.-.+|.+++|+|||-.+-.++..++..--|-+||-+|++.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLVNE 62 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeeeee
Confidence 3566889999999988877777776555577888776654
No 479
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=84.12 E-value=6.9 Score=43.79 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=24.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P 76 (496)
.+.+|.+++|+|||.+|-++.... ..+++.+-.
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c 435 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNC 435 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEec
Confidence 489999999999999877665443 346665544
No 480
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=84.02 E-value=6.5 Score=39.48 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHHHh-cCC--CcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHH
Q 010991 31 EKSLSKMFG-NGR--ARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 31 ~~al~~~~~-~~~--~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
..+++..+. +|- ++-.-|.+|.|+|||..++.++.. .+..+++|-|-.+|-..|...+
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc
Confidence 345666676 442 223447899999999998777654 4567888888888766655444
No 481
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.02 E-value=1.6 Score=41.58 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=29.9
Q ss_pred HHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEe
Q 010991 34 LSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLAT 76 (496)
Q Consensus 34 l~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P 76 (496)
++.++.+- ++.-.+|++++|+|||..++.++... +.++++++.
T Consensus 3 LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 3 LDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred hhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 44455421 22356888999999999887776542 678999984
No 482
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.02 E-value=1.3 Score=43.36 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=26.0
Q ss_pred HHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
+..++.++ +..++++|+|+|||...-..+..+..
T Consensus 26 l~~l~~~~--~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 26 LDLLLSNG--RPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp HHHHHHCT--EEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred HHHHHHcC--CcEEEECCCCCchhHHHHhhhccCCc
Confidence 34455665 69999999999999988777776543
No 483
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=83.98 E-value=6.5 Score=44.87 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=37.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHcC---C-CeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 267 RGDKIIVFADNLFALTEYAMKLR---K-PMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 267 ~g~kiIVF~~~~~~~~~l~~~L~---~-~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
.+.+++|+..+...++.+++.|. . .+..|... .|.+++++|+++ +-.+|+.+.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~~--~~~~l~~~F~~~-~~~vLlG~~ 702 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKNG--TAYNIKKRFDRG-EQQILLGLG 702 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCCc--cHHHHHHHHHcC-CCeEEEecc
Confidence 45689999999999999988885 2 23446433 356789999986 445665543
No 484
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=83.77 E-value=3.4 Score=47.88 Aligned_cols=65 Identities=11% Similarity=0.217 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 255 ~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
+.+.|.+... ..+.++|||..+...++.+++.|. ..++.=+++...|.+++++|+.+ +-.+|+.+
T Consensus 740 la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLlG~ 811 (928)
T PRK08074 740 VAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILLGT 811 (928)
T ss_pred HHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEEec
Confidence 3444444444 455689999999999999998884 22233233334688999999976 33455544
No 485
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=83.54 E-value=1.2 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
-.+|++|||+|||-++..++...+.
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCCC
Confidence 4678899999999999999888754
No 486
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=83.48 E-value=4.9 Score=40.34 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=30.6
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh--c-------CCcEEEEEeCh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--I-------KKSCLCLATNA 78 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~--~-------~~~~LIl~P~~ 78 (496)
+.++.++.+| ...-..|.+++|+|||..+..++.. . ..+++++..-.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 3566667654 2234557899999999988776642 1 13677776544
No 487
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=83.28 E-value=1.5 Score=39.88 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=28.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC---CcEEEEEeChHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAVS 80 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~---~~~LIl~P~~~L 80 (496)
.+.++++|+|+|||..+-.++..+. ..-++.+.-+.+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 4788999999999999888887766 256666665553
No 488
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=83.24 E-value=1.2 Score=44.12 Aligned_cols=30 Identities=20% Similarity=0.044 Sum_probs=23.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
-.+|++|||+|||-.++.++.. .. .+|=|.
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~-~~-eIIsaD 35 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKG-KA-EIINVD 35 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHh-CC-cEEecc
Confidence 4678899999999999999988 32 444444
No 489
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.06 E-value=5.6 Score=35.63 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=61.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc----EEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccccc--CCCcEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS----CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVV 118 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~----~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~--~~~~IiI 118 (496)
+..|.+++|+|||-...-++..+... .=++||-. +.=...-+..|.-+..+....+. +....-|
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV----------R~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV----------REGGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee----------ecCCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 67889999999998887777665432 23444421 11000112233333333222111 1111222
Q ss_pred EchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC--chHHHHHHHhcc-CccEEEEeecCCCCc
Q 010991 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP--AHMFRKVISLTK-SHCKLGLTATLVRED 185 (496)
Q Consensus 119 tT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~--~~~~~~~l~~l~-~~~~L~LTATp~r~d 185 (496)
.-|........+. ....+...+ ..-|++|+||.--|- ++.|.+.+..+- +... |=||..+.+
T Consensus 77 GkY~V~v~~le~i-~~~al~rA~--~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp--liatlHrrs 141 (179)
T COG1618 77 GKYGVNVEGLEEI-AIPALRRAL--EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP--LIATLHRRS 141 (179)
T ss_pred ceEEeeHHHHHHH-hHHHHHHHh--hcCCEEEEecccchhhccHHHHHHHHHHhcCCCc--EEEEEeccc
Confidence 2222211111100 011111222 456899999998765 678998887754 3333 446765543
No 490
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=83.03 E-value=2.6 Score=42.59 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=26.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC--CcEEEEEeChHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVS 80 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~P~~~L 80 (496)
.+.+|+++||+|||-..-+++..+. .+++++=.+.+|
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 5999999999999987766666654 356555444443
No 491
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.01 E-value=4.2 Score=43.64 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
.+|-.+...++...- ..|.++||.++.+..+..+++.|. +..+||+++..+|.+...+..+| +.+++|.|.
T Consensus 8 sGKT~v~l~~i~~~l-~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVVGTr 84 (505)
T TIGR00595 8 SGKTEVYLQAIEKVL-ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVIGTR 84 (505)
T ss_pred CCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEECCh
Confidence 345554444443322 457899999999988777776663 56799999999999998888887 788887776
No 492
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=82.96 E-value=3.6 Score=44.26 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---c-CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 30 QEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 30 Q~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~-~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
=..+++.++.+| ++.-.+|.+++|+|||..++.++.. . +.++++++--- -.+|..+.+..+
T Consensus 16 GI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee-~~~~i~~~~~~~ 82 (509)
T PRK09302 16 GIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE-SPEDIIRNVASF 82 (509)
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC-CHHHHHHHHHHc
Confidence 345788888654 3345677899999999998876643 2 56888887654 467777777664
No 493
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=82.86 E-value=8 Score=38.55 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (496)
|..|-+-++.||..+. ..+|.++-|+|||...+.+
T Consensus 75 rs~~P~lId~~fr~g~--~~~~~gdsg~GKttllL~l 109 (402)
T COG3598 75 RSNSPQLIDEFFRKGY--VSILYGDSGVGKTTLLLYL 109 (402)
T ss_pred cccChhhhhHHhhcCe--eEEEecCCcccHhHHHHHH
Confidence 4446677787887662 5677799999999885443
No 494
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.69 E-value=2.6 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
-..+++|+|+|||-++..++..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 4567899999999887666643
No 495
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=82.68 E-value=2.9 Score=43.13 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=55.0
Q ss_pred cceEEEeCCCCChHHHHHHHHH--hc-CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC--RI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~--~~-~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT 120 (496)
.+++|.++||+||++.|-.+-. .. ....+|-+.-.++.+. -.+.. .+|+ .-+.|+|....+ .+
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en-~~~~e-LFG~---~kGaftGa~~~k----~G----- 167 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN-LQEAE-LFGH---EKGAFTGAQGGK----AG----- 167 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC-HHHHH-Hhcc---ccceeecccCCc----Cc-----
Confidence 5899999999999999755542 22 2344555555544443 22333 3343 345666643321 11
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l 169 (496)
.|..-+=|.+.+||+|+++-..-.+++..+
T Consensus 168 -------------------lfe~A~GGtLfLDEI~~LP~~~Q~kLl~~l 197 (403)
T COG1221 168 -------------------LFEQANGGTLFLDEIHRLPPEGQEKLLRVL 197 (403)
T ss_pred -------------------hheecCCCEEehhhhhhCCHhHHHHHHHHH
Confidence 111235579999999999977555555544
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=82.51 E-value=3.7 Score=44.15 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=42.0
Q ss_pred HHHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..+++.++.+| ++...+|.+++|+|||..+..++.. .+.++++++... ..++..+.+..+
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~-~~~~i~~~~~~~ 323 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE-SRAQLIRNARSW 323 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC-CHHHHHHHHHHc
Confidence 45667777654 2335567899999999998777654 467899987654 366666666654
No 497
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=82.48 E-value=5.9 Score=42.87 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=24.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P 76 (496)
...+|.+++|+|||.+|-++.... .++++.|-.
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c 255 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNC 255 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeec
Confidence 489999999999999987776553 335555444
No 498
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.30 E-value=6.8 Score=43.19 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=19.7
Q ss_pred HhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 38 FGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 38 ~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
+......+.+|.+|+|+|||..+-.+.
T Consensus 170 ia~~~~~~vlL~Gp~GtGKTTLAr~i~ 196 (615)
T TIGR02903 170 VASPFPQHIILYGPPGVGKTTAARLAL 196 (615)
T ss_pred HhcCCCCeEEEECCCCCCHHHHHHHHH
Confidence 333344578999999999998865554
No 499
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=82.07 E-value=1.4 Score=43.01 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=25.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC---CcEEEEEeChH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAV 79 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~---~~~LIl~P~~~ 79 (496)
++.+++++||+|||-..-+++..+. .+++++-.+.+
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 5899999999999988766666552 45666655554
No 500
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=81.95 E-value=1.5 Score=45.66 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=25.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
.+.++.+|+|+|||..+-+++..+..+++.+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 5789999999999999988887777666544
Done!