Query 010991
Match_columns 496
No_of_seqs 382 out of 2405
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fwr_A DNA repair protein RAD2 100.0 9.9E-46 3.4E-50 390.2 27.3 326 19-381 87-466 (472)
2 3mwy_W Chromo domain-containin 100.0 1E-43 3.5E-48 397.0 35.4 334 22-383 233-698 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 3E-43 1E-47 373.9 30.9 332 20-377 32-461 (500)
4 1z3i_X Similar to RAD54-like; 100.0 1.4E-41 4.7E-46 371.1 33.5 335 23-383 53-542 (644)
5 2oca_A DAR protein, ATP-depend 100.0 7E-39 2.4E-43 341.1 30.5 344 23-393 111-498 (510)
6 1wp9_A ATP-dependent RNA helic 100.0 1.6E-37 5.5E-42 325.7 24.5 328 23-377 7-483 (494)
7 3dmq_A RNA polymerase-associat 100.0 4.6E-35 1.6E-39 332.2 28.5 331 21-378 149-624 (968)
8 3tbk_A RIG-I helicase domain; 100.0 7.1E-35 2.4E-39 312.1 24.1 325 23-376 2-514 (555)
9 4a2p_A RIG-I, retinoic acid in 100.0 1.2E-34 4E-39 310.8 24.3 326 22-376 4-515 (556)
10 3h1t_A Type I site-specific re 100.0 1.3E-34 4.5E-39 313.6 24.2 322 21-367 174-559 (590)
11 4a2q_A RIG-I, retinoic acid in 100.0 8.6E-34 2.9E-38 317.2 28.7 325 23-376 246-756 (797)
12 1s2m_A Putative ATP-dependent 100.0 5.5E-33 1.9E-37 285.9 26.7 286 25-369 43-365 (400)
13 1xti_A Probable ATP-dependent 100.0 4.9E-33 1.7E-37 285.0 25.8 277 25-345 30-346 (391)
14 2db3_A ATP-dependent RNA helic 100.0 1.4E-33 4.9E-38 294.3 22.0 303 25-387 78-424 (434)
15 2j0s_A ATP-dependent RNA helic 100.0 4.8E-33 1.6E-37 287.4 24.5 277 25-345 59-372 (410)
16 1hv8_A Putative ATP-dependent 100.0 7.4E-33 2.5E-37 280.7 25.1 274 24-345 27-334 (367)
17 2z0m_A 337AA long hypothetical 100.0 3.2E-33 1.1E-37 280.3 19.6 271 25-345 16-312 (337)
18 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-32 4.7E-37 311.4 27.0 329 20-376 243-756 (936)
19 3pey_A ATP-dependent RNA helic 100.0 3.1E-32 1E-36 279.0 24.5 280 24-345 26-345 (395)
20 2i4i_A ATP-dependent RNA helic 100.0 2.8E-32 9.4E-37 282.1 24.0 303 24-385 36-397 (417)
21 3eiq_A Eukaryotic initiation f 100.0 6.2E-33 2.1E-37 286.5 17.9 278 24-345 61-376 (414)
22 1fuu_A Yeast initiation factor 100.0 1.9E-33 6.5E-38 288.3 8.5 276 24-345 42-355 (394)
23 4gl2_A Interferon-induced heli 100.0 3.9E-31 1.3E-35 291.8 26.6 314 22-344 4-509 (699)
24 3fht_A ATP-dependent RNA helic 100.0 1.5E-30 5.3E-35 268.2 27.9 305 24-383 46-392 (412)
25 2ykg_A Probable ATP-dependent 100.0 3.4E-31 1.2E-35 292.2 22.6 323 23-374 11-521 (696)
26 3sqw_A ATP-dependent RNA helic 100.0 1.6E-30 5.5E-35 280.9 25.8 288 25-345 43-387 (579)
27 2v1x_A ATP-dependent DNA helic 100.0 3.3E-30 1.1E-34 277.8 27.3 277 24-345 43-363 (591)
28 3i5x_A ATP-dependent RNA helic 100.0 1.7E-30 5.9E-35 279.7 24.9 288 25-345 94-438 (563)
29 2xgj_A ATP-dependent RNA helic 100.0 6.4E-30 2.2E-34 289.9 30.6 316 20-371 81-501 (1010)
30 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-30 9.7E-35 275.1 24.4 268 24-345 24-332 (523)
31 3l9o_A ATP-dependent RNA helic 100.0 2.3E-29 7.9E-34 287.7 32.6 316 21-372 180-600 (1108)
32 3oiy_A Reverse gyrase helicase 100.0 1.1E-29 3.6E-34 263.1 27.1 276 23-366 19-362 (414)
33 2eyq_A TRCF, transcription-rep 100.0 3.3E-29 1.1E-33 287.9 29.3 297 21-381 599-934 (1151)
34 3fho_A ATP-dependent RNA helic 100.0 2.7E-30 9.3E-35 274.7 12.4 279 25-345 141-459 (508)
35 4a4z_A Antiviral helicase SKI2 100.0 3.2E-28 1.1E-32 276.0 29.6 320 20-374 34-497 (997)
36 3fmp_B ATP-dependent RNA helic 100.0 4.6E-30 1.6E-34 270.9 12.4 281 24-345 113-435 (479)
37 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 7.3E-29 2.5E-33 280.1 20.6 319 24-367 270-707 (1038)
38 2p6r_A Afuhel308 helicase; pro 100.0 2.1E-28 7.1E-33 270.2 22.1 295 25-370 25-389 (702)
39 2zj8_A DNA helicase, putative 100.0 1E-28 3.6E-33 273.3 17.9 294 25-371 23-389 (720)
40 2va8_A SSO2462, SKI2-type heli 100.0 1.7E-27 5.8E-32 263.5 27.2 302 25-370 30-409 (715)
41 1gm5_A RECG; helicase, replica 99.9 4.7E-28 1.6E-32 266.9 12.4 274 22-345 365-686 (780)
42 4f92_B U5 small nuclear ribonu 99.9 3E-25 1E-29 262.3 26.8 293 25-370 79-474 (1724)
43 4ddu_A Reverse gyrase; topoiso 99.9 9.4E-25 3.2E-29 249.6 26.8 240 22-320 75-360 (1104)
44 2fz4_A DNA repair protein RAD2 99.9 3.1E-25 1.1E-29 212.3 18.8 155 12-188 79-235 (237)
45 4f92_B U5 small nuclear ribonu 99.9 3.5E-24 1.2E-28 253.2 26.5 283 25-346 926-1296(1724)
46 1rif_A DAR protein, DNA helica 99.9 8.5E-25 2.9E-29 214.7 14.1 162 24-199 112-280 (282)
47 1gku_B Reverse gyrase, TOP-RG; 99.9 1.9E-23 6.3E-28 238.8 22.2 239 23-321 55-326 (1054)
48 2v6i_A RNA helicase; membrane, 99.9 6.1E-23 2.1E-27 213.5 17.5 232 44-345 3-279 (431)
49 1yks_A Genome polyprotein [con 99.9 3.9E-23 1.3E-27 215.5 10.8 230 44-344 9-286 (440)
50 2z83_A Helicase/nucleoside tri 99.9 8.8E-23 3E-27 214.0 13.2 237 37-345 17-301 (459)
51 2jlq_A Serine protease subunit 99.9 6.7E-23 2.3E-27 214.5 12.2 247 25-345 4-299 (451)
52 2xau_A PRE-mRNA-splicing facto 99.9 1.1E-21 3.8E-26 217.1 21.2 272 25-344 93-432 (773)
53 2whx_A Serine protease/ntpase/ 99.9 1.9E-22 6.6E-27 218.0 13.7 245 26-345 172-466 (618)
54 3o8b_A HCV NS3 protease/helica 99.9 7.1E-23 2.4E-27 220.3 9.8 255 25-372 217-517 (666)
55 3rc3_A ATP-dependent RNA helic 99.9 3.8E-22 1.3E-26 216.8 14.8 245 44-368 156-444 (677)
56 2wv9_A Flavivirin protease NS2 99.9 6.3E-23 2.1E-27 223.3 8.6 248 25-344 215-520 (673)
57 1tf5_A Preprotein translocase 99.9 5.9E-22 2E-26 215.3 10.9 307 23-345 81-534 (844)
58 3b6e_A Interferon-induced heli 99.8 2.5E-21 8.6E-26 181.4 11.5 154 21-180 29-216 (216)
59 1t6n_A Probable ATP-dependent 99.8 4.8E-21 1.6E-25 180.6 13.3 149 25-184 36-203 (220)
60 1vec_A ATP-dependent RNA helic 99.8 4.2E-21 1.4E-25 179.0 12.6 147 25-182 25-188 (206)
61 2fsf_A Preprotein translocase 99.8 5.4E-21 1.8E-25 207.3 13.3 126 23-158 72-207 (853)
62 2gxq_A Heat resistant RNA depe 99.8 7.6E-21 2.6E-25 177.2 10.8 147 24-183 22-187 (207)
63 2pl3_A Probable ATP-dependent 99.8 1.9E-20 6.6E-25 178.5 13.5 150 24-183 46-214 (236)
64 1q0u_A Bstdead; DEAD protein, 99.8 5.8E-21 2E-25 180.1 9.7 149 24-183 25-193 (219)
65 1wrb_A DJVLGB; RNA helicase, D 99.8 3.1E-20 1.1E-24 179.1 14.8 148 25-183 45-221 (253)
66 3ber_A Probable ATP-dependent 99.8 8.4E-21 2.9E-25 182.9 10.5 150 24-183 64-229 (249)
67 1qde_A EIF4A, translation init 99.8 1.1E-20 3.7E-25 178.6 11.0 149 24-183 35-198 (224)
68 3iuy_A Probable ATP-dependent 99.8 2.6E-20 8.9E-25 176.6 12.9 148 24-183 41-210 (228)
69 2oxc_A Probable ATP-dependent 99.8 4.2E-20 1.4E-24 175.6 12.8 147 25-182 46-209 (230)
70 1nkt_A Preprotein translocase 99.8 6E-20 2E-24 199.4 15.2 126 23-158 109-244 (922)
71 3ly5_A ATP-dependent RNA helic 99.8 1.9E-20 6.3E-25 181.8 10.0 150 25-184 76-245 (262)
72 3fe2_A Probable ATP-dependent 99.8 2E-20 6.9E-25 179.2 9.6 148 25-183 51-219 (242)
73 3bor_A Human initiation factor 99.8 3.1E-20 1.1E-24 177.4 10.4 148 25-183 52-216 (237)
74 3dkp_A Probable ATP-dependent 99.8 3E-20 1E-24 178.1 9.5 150 25-183 51-222 (245)
75 1c4o_A DNA nucleotide excision 99.8 1.1E-17 3.8E-22 182.4 19.6 100 257-373 430-554 (664)
76 3fmo_B ATP-dependent RNA helic 99.7 3.8E-18 1.3E-22 168.7 12.2 152 24-183 113-279 (300)
77 1z5z_A Helicase of the SNF2/RA 99.7 1.4E-17 4.7E-22 162.1 15.1 158 210-379 22-234 (271)
78 2d7d_A Uvrabc system protein B 99.7 1.4E-16 4.6E-21 173.8 22.7 100 257-373 436-560 (661)
79 3jux_A Protein translocase sub 99.6 8.6E-16 2.9E-20 163.7 7.1 91 251-345 458-576 (822)
80 3llm_A ATP-dependent RNA helic 99.6 5.6E-14 1.9E-18 133.7 15.7 147 23-183 59-220 (235)
81 2hjv_A ATP-dependent RNA helic 99.5 3.3E-13 1.1E-17 120.9 12.6 92 250-345 20-131 (163)
82 1t5i_A C_terminal domain of A 99.4 4.4E-13 1.5E-17 121.2 9.9 92 250-345 16-127 (172)
83 2jgn_A DBX, DDX3, ATP-dependen 99.4 9.6E-13 3.3E-17 120.5 10.7 118 250-385 30-167 (185)
84 2rb4_A ATP-dependent RNA helic 99.4 1.9E-12 6.5E-17 117.3 12.0 102 252-370 21-148 (175)
85 1fuk_A Eukaryotic initiation f 99.4 9.7E-13 3.3E-17 118.0 9.9 90 252-345 17-126 (165)
86 3eaq_A Heat resistant RNA depe 99.4 3.1E-12 1.1E-16 119.7 13.4 93 249-345 15-127 (212)
87 3crv_A XPD/RAD3 related DNA he 99.4 7.9E-13 2.7E-17 141.5 10.5 126 24-159 2-187 (551)
88 2p6n_A ATP-dependent RNA helic 99.4 3.3E-12 1.1E-16 117.5 12.1 117 251-386 41-177 (191)
89 2vl7_A XPD; helicase, unknown 99.3 2.1E-12 7.2E-17 137.7 11.3 67 23-91 5-74 (540)
90 3i32_A Heat resistant RNA depe 99.3 1E-11 3.6E-16 122.1 11.0 94 248-345 11-124 (300)
91 2yjt_D ATP-dependent RNA helic 98.9 3.1E-13 1.1E-17 122.0 0.0 92 250-345 15-126 (170)
92 2ipc_A Preprotein translocase 99.1 4E-10 1.4E-14 122.7 10.5 126 23-158 77-215 (997)
93 3hgt_A HDA1 complex subunit 3; 98.8 5.5E-09 1.9E-13 102.3 8.3 113 248-376 106-244 (328)
94 4a15_A XPD helicase, ATP-depen 98.4 5.6E-07 1.9E-11 97.2 8.8 67 24-92 2-75 (620)
95 2gk6_A Regulator of nonsense t 98.3 1.3E-05 4.5E-10 86.6 17.4 65 24-91 179-247 (624)
96 3e1s_A Exodeoxyribonuclease V, 98.3 5.3E-06 1.8E-10 88.7 13.5 128 23-183 187-317 (574)
97 1w36_D RECD, exodeoxyribonucle 98.3 3.6E-06 1.2E-10 90.7 11.6 143 27-183 151-300 (608)
98 4b3f_X DNA-binding protein smu 98.2 1.9E-06 6.5E-11 93.7 9.0 66 24-91 188-256 (646)
99 2xzl_A ATP-dependent helicase 98.2 2.3E-05 7.9E-10 86.9 17.5 65 24-91 359-427 (802)
100 2wjy_A Regulator of nonsense t 98.1 5.3E-05 1.8E-09 83.9 17.1 66 23-91 354-423 (800)
101 3upu_A ATP-dependent DNA helic 98.1 2.4E-05 8.3E-10 81.3 12.6 133 25-183 25-166 (459)
102 2o0j_A Terminase, DNA packagin 97.7 0.00084 2.9E-08 67.7 16.0 143 23-184 161-316 (385)
103 3vkw_A Replicase large subunit 97.7 0.0001 3.5E-09 75.4 9.2 109 45-183 163-271 (446)
104 3cpe_A Terminase, DNA packagin 97.6 0.0013 4.6E-08 70.4 16.8 143 23-184 161-316 (592)
105 3lfu_A DNA helicase II; SF1 he 97.4 0.00067 2.3E-08 73.4 11.3 64 25-93 9-79 (647)
106 2orw_A Thymidine kinase; TMTK, 97.2 0.0019 6.6E-08 58.2 10.2 34 45-78 5-41 (184)
107 1xx6_A Thymidine kinase; NESG, 97.2 0.0019 6.6E-08 58.6 10.0 35 44-78 9-46 (191)
108 2j9r_A Thymidine kinase; TK1, 97.1 0.0022 7.6E-08 59.0 10.0 34 46-79 31-67 (214)
109 3u61_B DNA polymerase accessor 96.9 0.0072 2.5E-07 59.2 12.5 113 25-182 29-146 (324)
110 1l8q_A Chromosomal replication 96.9 0.02 6.9E-07 56.0 15.4 44 43-87 37-83 (324)
111 2b8t_A Thymidine kinase; deoxy 96.8 0.0015 5.1E-08 60.8 6.3 35 44-78 13-50 (223)
112 3pvs_A Replication-associated 96.8 0.0036 1.2E-07 64.6 9.7 44 32-75 39-82 (447)
113 2p65_A Hypothetical protein PF 96.8 0.0087 3E-07 52.8 10.7 42 26-67 26-67 (187)
114 1jbk_A CLPB protein; beta barr 96.6 0.016 5.6E-07 51.0 11.4 42 26-67 26-67 (195)
115 1a5t_A Delta prime, HOLB; zinc 96.6 0.014 4.8E-07 57.6 11.7 43 26-68 3-49 (334)
116 3eie_A Vacuolar protein sortin 96.6 0.0056 1.9E-07 60.1 8.8 33 44-76 52-84 (322)
117 3e2i_A Thymidine kinase; Zn-bi 96.6 0.015 5.2E-07 53.4 10.9 36 44-79 29-67 (219)
118 2chg_A Replication factor C sm 96.6 0.019 6.4E-07 52.0 11.7 42 26-67 21-62 (226)
119 3vfd_A Spastin; ATPase, microt 96.4 0.011 3.9E-07 59.5 10.3 33 44-76 149-181 (389)
120 2qby_B CDC6 homolog 3, cell di 96.4 0.013 4.5E-07 58.5 10.6 44 24-67 22-69 (384)
121 1d2n_A N-ethylmaleimide-sensit 96.3 0.013 4.4E-07 55.9 9.5 34 42-75 63-96 (272)
122 3co5_A Putative two-component 96.3 0.0072 2.5E-07 51.8 6.6 25 44-68 28-52 (143)
123 1iqp_A RFCS; clamp loader, ext 96.2 0.023 8E-07 55.1 10.8 42 26-67 29-70 (327)
124 1sxj_D Activator 1 41 kDa subu 96.2 0.0048 1.6E-07 61.0 5.7 41 27-67 42-82 (353)
125 3bos_A Putative DNA replicatio 96.2 0.014 4.8E-07 53.9 8.5 38 29-66 38-75 (242)
126 3h4m_A Proteasome-activating n 96.2 0.0096 3.3E-07 57.0 7.5 35 42-76 50-84 (285)
127 3ec2_A DNA replication protein 96.1 0.022 7.5E-07 50.5 9.3 61 27-88 16-86 (180)
128 2bjv_A PSP operon transcriptio 96.1 0.023 7.9E-07 53.8 10.0 36 44-80 30-68 (265)
129 2qp9_X Vacuolar protein sortin 96.1 0.0093 3.2E-07 59.5 7.5 33 44-76 85-117 (355)
130 3pfi_A Holliday junction ATP-d 96.1 0.028 9.4E-07 55.3 10.8 49 26-74 33-86 (338)
131 1sxj_B Activator 1 37 kDa subu 96.1 0.02 6.7E-07 55.6 9.6 42 26-67 25-66 (323)
132 2zan_A Vacuolar protein sortin 96.1 0.012 4.1E-07 60.6 8.3 34 43-76 167-201 (444)
133 2gno_A DNA polymerase III, gam 96.0 0.033 1.1E-06 54.3 10.7 34 32-65 7-40 (305)
134 3syl_A Protein CBBX; photosynt 96.0 0.051 1.7E-06 52.5 12.1 24 44-67 68-91 (309)
135 2zpa_A Uncharacterized protein 96.0 0.022 7.7E-07 61.1 10.0 119 23-184 173-291 (671)
136 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0067 2.3E-07 59.7 5.6 33 44-76 46-79 (322)
137 2z4s_A Chromosomal replication 96.0 0.15 5E-06 52.3 15.8 43 43-86 130-177 (440)
138 1fnn_A CDC6P, cell division co 96.0 0.078 2.7E-06 52.7 13.5 44 24-67 19-68 (389)
139 2orv_A Thymidine kinase; TP4A 95.9 0.021 7.2E-07 53.0 8.1 36 44-79 20-58 (234)
140 3d8b_A Fidgetin-like protein 1 95.9 0.023 7.8E-07 56.7 8.9 34 43-76 117-150 (357)
141 3n70_A Transport activator; si 95.7 0.02 7E-07 49.0 7.0 24 44-67 25-48 (145)
142 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.026 8.8E-07 53.1 8.0 35 43-77 39-73 (262)
143 1njg_A DNA polymerase III subu 95.6 0.11 3.8E-06 47.4 12.1 43 25-67 26-69 (250)
144 2v1u_A Cell division control p 95.6 0.073 2.5E-06 52.8 11.6 44 24-67 21-68 (387)
145 1w4r_A Thymidine kinase; type 95.6 0.043 1.5E-06 49.6 8.7 34 44-77 21-57 (195)
146 4b4t_J 26S protease regulatory 95.5 0.021 7.2E-07 57.6 7.2 37 42-78 181-217 (405)
147 1hqc_A RUVB; extended AAA-ATPa 95.5 0.082 2.8E-06 51.3 11.3 48 26-73 16-68 (324)
148 2chq_A Replication factor C sm 95.4 0.016 5.6E-07 56.1 5.7 41 27-67 22-62 (319)
149 3hjh_A Transcription-repair-co 95.4 0.034 1.2E-06 57.7 8.2 80 45-127 16-116 (483)
150 3cf0_A Transitional endoplasmi 95.2 0.063 2.1E-06 52.0 9.2 33 43-75 49-81 (301)
151 1jr3_A DNA polymerase III subu 95.1 0.092 3.1E-06 52.0 10.3 43 26-68 20-63 (373)
152 2qby_A CDC6 homolog 1, cell di 95.1 0.086 2.9E-06 52.2 10.1 53 23-75 21-83 (386)
153 3uk6_A RUVB-like 2; hexameric 95.1 0.22 7.4E-06 49.3 12.9 49 27-75 49-104 (368)
154 3t15_A Ribulose bisphosphate c 95.0 0.025 8.6E-07 54.7 5.8 33 44-76 37-69 (293)
155 3hu3_A Transitional endoplasmi 95.0 0.083 2.8E-06 55.0 9.8 33 43-75 238-270 (489)
156 4b4t_L 26S protease subunit RP 94.9 0.031 1E-06 57.2 6.3 36 42-77 214-249 (437)
157 1sxj_E Activator 1 40 kDa subu 94.9 0.11 3.6E-06 51.3 10.0 41 27-67 19-60 (354)
158 1uaa_A REP helicase, protein ( 94.8 0.034 1.1E-06 60.4 6.5 75 25-104 2-86 (673)
159 4b4t_H 26S protease regulatory 94.7 0.074 2.5E-06 54.5 8.4 37 42-78 242-278 (467)
160 1sxj_C Activator 1 40 kDa subu 94.7 0.18 6E-06 49.6 10.9 40 28-67 31-70 (340)
161 4b4t_I 26S protease regulatory 94.6 0.026 8.7E-07 57.4 4.7 36 42-77 215-250 (437)
162 1ojl_A Transcriptional regulat 94.6 0.049 1.7E-06 53.0 6.6 32 44-75 26-60 (304)
163 1sxj_A Activator 1 95 kDa subu 94.5 0.1 3.4E-06 54.7 9.3 52 26-77 43-111 (516)
164 1qvr_A CLPB protein; coiled co 94.5 0.14 4.9E-06 57.0 10.8 41 27-67 175-215 (854)
165 2dr3_A UPF0273 protein PH0284; 94.2 0.15 5.1E-06 47.1 8.7 56 34-90 12-72 (247)
166 4fcw_A Chaperone protein CLPB; 93.8 0.078 2.7E-06 51.1 6.1 31 45-75 49-82 (311)
167 1g5t_A COB(I)alamin adenosyltr 93.6 0.19 6.5E-06 45.4 7.9 124 44-181 29-162 (196)
168 1pjr_A PCRA; DNA repair, DNA r 93.5 0.12 4.1E-06 56.5 7.7 75 25-104 11-94 (724)
169 1r6b_X CLPA protein; AAA+, N-t 93.3 0.12 4E-06 56.9 7.2 40 27-66 191-230 (758)
170 2ce7_A Cell division protein F 93.3 0.2 6.8E-06 51.8 8.4 32 44-75 50-81 (476)
171 1n0w_A DNA repair protein RAD5 93.1 0.41 1.4E-05 44.0 9.7 46 33-78 12-68 (243)
172 3k1j_A LON protease, ATP-depen 92.7 0.76 2.6E-05 49.0 12.3 34 32-67 51-84 (604)
173 3pxi_A Negative regulator of g 92.6 0.068 2.3E-06 58.8 3.9 23 45-67 523-545 (758)
174 1w5s_A Origin recognition comp 92.4 0.49 1.7E-05 47.3 9.9 44 24-67 24-76 (412)
175 1r6b_X CLPA protein; AAA+, N-t 92.4 0.21 7.1E-06 54.9 7.7 30 45-74 490-519 (758)
176 1u94_A RECA protein, recombina 92.4 0.58 2E-05 46.4 10.1 48 32-79 49-102 (356)
177 1xp8_A RECA protein, recombina 92.4 0.42 1.4E-05 47.6 9.1 52 32-84 60-117 (366)
178 2zr9_A Protein RECA, recombina 91.8 0.56 1.9E-05 46.4 9.2 49 31-79 46-100 (349)
179 2w0m_A SSO2452; RECA, SSPF, un 91.7 2.2 7.5E-05 38.4 12.7 57 33-90 11-72 (235)
180 3hr8_A Protein RECA; alpha and 91.6 0.74 2.5E-05 45.6 9.8 49 32-80 47-101 (356)
181 2kjq_A DNAA-related protein; s 91.4 0.12 4.3E-06 44.3 3.5 23 44-66 37-59 (149)
182 1v5w_A DMC1, meiotic recombina 91.3 0.34 1.1E-05 47.8 7.0 47 32-78 109-166 (343)
183 2q6t_A DNAB replication FORK h 91.0 1.6 5.5E-05 44.5 12.0 64 32-96 188-257 (444)
184 3cf2_A TER ATPase, transitiona 90.9 0.41 1.4E-05 52.6 7.8 34 43-76 238-271 (806)
185 4b4t_M 26S protease regulatory 90.9 0.17 5.9E-06 51.6 4.5 37 42-78 214-250 (434)
186 2r6a_A DNAB helicase, replicat 90.7 0.98 3.4E-05 46.3 10.1 55 33-88 192-251 (454)
187 3kl4_A SRP54, signal recogniti 90.6 1.1 3.9E-05 45.5 10.2 32 44-75 98-132 (433)
188 3dm5_A SRP54, signal recogniti 90.4 2.2 7.5E-05 43.4 12.2 113 44-181 101-224 (443)
189 4b4t_K 26S protease regulatory 90.4 0.31 1.1E-05 49.6 5.8 36 42-77 205-240 (428)
190 2ipc_A Preprotein translocase 89.7 3.7 0.00013 45.4 13.7 33 255-289 432-464 (997)
191 3cf2_A TER ATPase, transitiona 89.0 0.18 6.2E-06 55.4 3.0 34 43-76 511-544 (806)
192 2vl7_A XPD; helicase, unknown 88.9 1.2 4E-05 46.8 9.1 54 256-312 373-428 (540)
193 1qvr_A CLPB protein; coiled co 88.8 0.57 1.9E-05 52.2 6.9 30 141-170 656-685 (854)
194 3io5_A Recombination and repai 88.7 2.2 7.7E-05 41.4 10.1 49 32-80 12-70 (333)
195 2eyq_A TRCF, transcription-rep 88.5 0.65 2.2E-05 53.4 7.3 79 46-127 20-119 (1151)
196 1u0j_A DNA replication protein 88.5 0.76 2.6E-05 43.5 6.6 34 33-66 92-127 (267)
197 3cmu_A Protein RECA, recombina 88.5 1.6 5.6E-05 52.5 10.7 46 33-78 1414-1465(2050)
198 1ofh_A ATP-dependent HSL prote 88.4 0.75 2.6E-05 43.9 6.7 34 43-76 50-83 (310)
199 3u4q_A ATP-dependent helicase/ 87.6 0.62 2.1E-05 54.1 6.4 64 23-91 8-80 (1232)
200 1um8_A ATP-dependent CLP prote 87.0 0.48 1.7E-05 47.1 4.5 31 44-74 73-103 (376)
201 2w58_A DNAI, primosome compone 86.9 1.2 4.2E-05 39.6 6.8 32 44-75 55-89 (202)
202 2z43_A DNA repair and recombin 86.7 1.3 4.4E-05 43.1 7.3 59 32-90 94-164 (324)
203 2zts_A Putative uncharacterize 86.6 0.68 2.3E-05 42.6 5.0 56 34-90 19-80 (251)
204 3lda_A DNA repair protein RAD5 86.3 1.5 5.1E-05 44.1 7.7 46 33-78 166-222 (400)
205 2r8r_A Sensor protein; KDPD, P 86.1 7 0.00024 35.9 11.4 32 44-75 7-41 (228)
206 2cvh_A DNA repair and recombin 85.8 1.1 3.7E-05 40.3 5.8 57 32-88 7-66 (220)
207 1tue_A Replication protein E1; 85.4 0.66 2.3E-05 42.2 4.0 40 31-70 45-85 (212)
208 3hws_A ATP-dependent CLP prote 85.4 0.78 2.7E-05 45.3 5.0 34 44-77 52-85 (363)
209 1lv7_A FTSH; alpha/beta domain 85.3 0.74 2.5E-05 42.9 4.6 31 44-74 46-76 (257)
210 3a8t_A Adenylate isopentenyltr 85.2 0.42 1.5E-05 46.9 2.9 25 45-69 42-66 (339)
211 3te6_A Regulatory protein SIR3 85.1 0.55 1.9E-05 45.8 3.6 41 27-67 25-69 (318)
212 3b9p_A CG5977-PA, isoform A; A 84.8 0.87 3E-05 43.4 4.9 34 43-76 54-87 (297)
213 2qgz_A Helicase loader, putati 83.7 0.92 3.1E-05 43.9 4.5 33 43-75 152-188 (308)
214 2r44_A Uncharacterized protein 83.6 1.2 4.1E-05 43.2 5.4 46 28-75 33-78 (331)
215 3trf_A Shikimate kinase, SK; a 83.2 0.97 3.3E-05 39.6 4.2 29 44-72 6-34 (185)
216 1qhx_A CPT, protein (chloramph 82.7 1.3 4.5E-05 38.3 4.9 29 45-73 5-33 (178)
217 3pxg_A Negative regulator of g 81.6 1.5 5.1E-05 45.1 5.5 41 27-67 185-225 (468)
218 2c9o_A RUVB-like 1; hexameric 81.5 1.2 4E-05 45.7 4.5 33 44-76 64-98 (456)
219 2i1q_A DNA repair and recombin 81.3 2.5 8.7E-05 40.8 6.8 59 32-90 85-165 (322)
220 3foz_A TRNA delta(2)-isopenten 80.8 1 3.4E-05 43.7 3.5 24 45-68 12-35 (316)
221 3exa_A TRNA delta(2)-isopenten 80.5 0.97 3.3E-05 43.9 3.3 32 45-78 5-36 (322)
222 3cmw_A Protein RECA, recombina 80.3 3.3 0.00011 49.2 8.2 99 33-158 719-823 (1706)
223 2ze6_A Isopentenyl transferase 79.7 1.3 4.6E-05 41.3 3.9 26 45-70 3-28 (253)
224 1g41_A Heat shock protein HSLU 79.4 1.8 6.1E-05 44.1 5.0 34 43-76 50-83 (444)
225 3cmw_A Protein RECA, recombina 78.9 4 0.00014 48.5 8.3 101 31-158 1416-1522(1706)
226 1c9k_A COBU, adenosylcobinamid 78.7 1.6 5.3E-05 38.8 3.8 45 46-91 2-46 (180)
227 3crm_A TRNA delta(2)-isopenten 78.5 1.3 4.5E-05 43.2 3.5 24 45-68 7-30 (323)
228 3vaa_A Shikimate kinase, SK; s 78.4 1.8 6.1E-05 38.6 4.2 28 44-71 26-53 (199)
229 2r62_A Cell division protease 78.4 0.54 1.9E-05 44.1 0.8 30 44-73 45-74 (268)
230 3bh0_A DNAB-like replicative h 78.1 4.8 0.00016 38.8 7.5 58 32-90 56-117 (315)
231 1ls1_A Signal recognition part 77.6 13 0.00044 35.4 10.3 31 45-75 100-133 (295)
232 2x8a_A Nuclear valosin-contain 77.4 3 0.0001 39.4 5.7 31 44-74 45-75 (274)
233 1ixz_A ATP-dependent metallopr 77.1 2.4 8.3E-05 39.2 4.9 32 44-75 50-81 (254)
234 3iij_A Coilin-interacting nucl 76.3 2.2 7.6E-05 37.1 4.2 28 44-71 12-39 (180)
235 1e9r_A Conjugal transfer prote 75.4 3.5 0.00012 41.6 5.9 39 44-82 54-95 (437)
236 3cmu_A Protein RECA, recombina 75.3 6.6 0.00022 47.4 8.8 100 32-158 369-474 (2050)
237 2qmh_A HPR kinase/phosphorylas 75.2 1.7 6E-05 39.2 3.1 25 44-68 35-59 (205)
238 1zuh_A Shikimate kinase; alpha 75.2 2.3 7.9E-05 36.5 3.9 29 44-72 8-36 (168)
239 3d3q_A TRNA delta(2)-isopenten 75.1 1.8 6.2E-05 42.4 3.5 24 45-68 9-32 (340)
240 3kb2_A SPBC2 prophage-derived 75.0 2.3 8E-05 36.3 3.9 26 45-70 3-28 (173)
241 1j8m_F SRP54, signal recogniti 74.7 14 0.00047 35.3 9.6 32 45-76 100-134 (297)
242 3lw7_A Adenylate kinase relate 74.6 2.3 8E-05 36.2 3.8 26 45-71 3-28 (179)
243 1iy2_A ATP-dependent metallopr 74.2 3.2 0.00011 39.1 4.9 31 45-75 75-105 (278)
244 3pxi_A Negative regulator of g 73.7 3.1 0.00011 45.5 5.3 41 27-67 185-225 (758)
245 3eph_A TRNA isopentenyltransfe 73.4 1.9 6.5E-05 43.3 3.2 24 45-68 4-27 (409)
246 2ffh_A Protein (FFH); SRP54, s 72.9 21 0.00071 36.0 10.8 31 45-75 100-133 (425)
247 2iyv_A Shikimate kinase, SK; t 72.8 3.1 0.00011 36.2 4.2 26 45-70 4-29 (184)
248 1y63_A LMAJ004144AAA protein; 72.2 2.8 9.6E-05 36.7 3.8 23 44-66 11-33 (184)
249 1via_A Shikimate kinase; struc 72.1 2.8 9.6E-05 36.2 3.7 26 45-70 6-31 (175)
250 2rhm_A Putative kinase; P-loop 72.0 3.4 0.00011 36.1 4.3 27 44-70 6-32 (193)
251 1p9r_A General secretion pathw 71.6 6.6 0.00023 39.6 6.8 41 25-66 150-190 (418)
252 2vhj_A Ntpase P4, P4; non- hyd 71.4 1.7 5.7E-05 42.4 2.2 32 45-76 125-156 (331)
253 3dl0_A Adenylate kinase; phosp 71.1 3.5 0.00012 37.0 4.2 26 45-70 2-27 (216)
254 1kag_A SKI, shikimate kinase I 70.8 3.8 0.00013 35.1 4.3 25 45-69 6-30 (173)
255 2dhr_A FTSH; AAA+ protein, hex 70.7 3.8 0.00013 42.4 4.9 33 44-76 65-97 (499)
256 3aez_A Pantothenate kinase; tr 70.7 17 0.0006 34.8 9.4 20 45-64 92-111 (312)
257 4a1f_A DNAB helicase, replicat 70.7 9.7 0.00033 37.2 7.5 56 32-88 34-93 (338)
258 3bgw_A DNAB-like replicative h 70.5 4.8 0.00016 41.0 5.5 57 32-89 185-245 (444)
259 3be4_A Adenylate kinase; malar 70.4 2.9 0.0001 37.7 3.6 27 44-70 6-32 (217)
260 2c95_A Adenylate kinase 1; tra 70.1 3.7 0.00013 36.0 4.1 27 44-70 10-36 (196)
261 1ny5_A Transcriptional regulat 69.8 6.4 0.00022 39.2 6.2 93 44-170 161-256 (387)
262 1aky_A Adenylate kinase; ATP:A 69.7 3.7 0.00013 37.0 4.1 26 44-69 5-30 (220)
263 3fb4_A Adenylate kinase; psych 69.6 3.5 0.00012 36.9 3.9 27 45-71 2-28 (216)
264 1e6c_A Shikimate kinase; phosp 69.4 3.4 0.00012 35.4 3.6 26 45-70 4-29 (173)
265 3dzd_A Transcriptional regulat 69.4 7.1 0.00024 38.6 6.4 92 44-170 153-247 (368)
266 1gvn_B Zeta; postsegregational 69.4 3.6 0.00012 39.2 4.1 32 44-75 34-65 (287)
267 1pzn_A RAD51, DNA repair and r 68.8 7.5 0.00026 38.1 6.4 47 32-78 118-175 (349)
268 1qf9_A UMP/CMP kinase, protein 68.5 3.8 0.00013 35.6 3.8 25 45-69 8-32 (194)
269 2r2a_A Uncharacterized protein 68.4 4 0.00014 36.7 3.9 22 45-66 7-28 (199)
270 1ex7_A Guanylate kinase; subst 68.3 4.3 0.00015 36.0 4.1 26 44-69 2-27 (186)
271 1zd8_A GTP:AMP phosphotransfer 68.2 4.3 0.00015 36.8 4.2 27 44-70 8-34 (227)
272 2cdn_A Adenylate kinase; phosp 68.2 4 0.00014 36.1 3.9 26 45-70 22-47 (201)
273 1nks_A Adenylate kinase; therm 68.0 5.1 0.00017 34.8 4.5 24 45-68 3-26 (194)
274 3cm0_A Adenylate kinase; ATP-b 67.9 3.8 0.00013 35.6 3.7 24 45-68 6-29 (186)
275 2fna_A Conserved hypothetical 67.4 7.4 0.00025 37.4 6.0 48 24-75 15-62 (357)
276 2pt5_A Shikimate kinase, SK; a 67.4 4.3 0.00015 34.6 3.8 27 45-71 2-28 (168)
277 1ak2_A Adenylate kinase isoenz 67.3 4.3 0.00015 37.0 4.0 26 44-69 17-42 (233)
278 2oap_1 GSPE-2, type II secreti 67.2 5.6 0.00019 41.3 5.3 40 26-67 245-284 (511)
279 1tev_A UMP-CMP kinase; ploop, 67.2 4.1 0.00014 35.5 3.7 25 45-69 5-29 (196)
280 4eun_A Thermoresistant glucoki 67.1 4.5 0.00015 35.9 4.0 24 44-67 30-53 (200)
281 3t61_A Gluconokinase; PSI-biol 66.8 4.4 0.00015 35.9 3.9 24 45-68 20-43 (202)
282 2bwj_A Adenylate kinase 5; pho 66.8 4.3 0.00015 35.6 3.8 24 45-68 14-37 (199)
283 1in4_A RUVB, holliday junction 66.8 8.3 0.00028 37.4 6.2 43 28-70 31-78 (334)
284 1e4v_A Adenylate kinase; trans 66.7 4.6 0.00016 36.2 4.0 26 45-70 2-27 (214)
285 1zp6_A Hypothetical protein AT 66.5 5.2 0.00018 34.9 4.3 29 44-72 10-38 (191)
286 3bs4_A Uncharacterized protein 66.4 11 0.00036 35.4 6.6 59 32-91 8-71 (260)
287 2p5t_B PEZT; postsegregational 66.2 3.6 0.00012 38.2 3.3 31 44-74 33-63 (253)
288 1g8p_A Magnesium-chelatase 38 66.2 3.8 0.00013 39.6 3.6 26 44-69 46-71 (350)
289 3nbx_X ATPase RAVA; AAA+ ATPas 66.1 5.8 0.0002 41.1 5.1 25 44-68 42-66 (500)
290 3a4m_A L-seryl-tRNA(SEC) kinas 66.0 5.8 0.0002 36.9 4.7 30 45-74 6-38 (260)
291 2vli_A Antibiotic resistance p 66.0 3.5 0.00012 35.7 3.0 28 45-72 7-34 (183)
292 1zak_A Adenylate kinase; ATP:A 65.9 4.2 0.00014 36.7 3.7 26 44-69 6-31 (222)
293 4a74_A DNA repair and recombin 65.4 9.6 0.00033 34.1 6.0 46 32-77 12-68 (231)
294 2qen_A Walker-type ATPase; unk 65.3 9.7 0.00033 36.4 6.4 48 24-75 14-61 (350)
295 1kht_A Adenylate kinase; phosp 64.8 3.7 0.00013 35.7 3.0 24 45-68 5-28 (192)
296 3umf_A Adenylate kinase; rossm 64.5 5.2 0.00018 36.5 3.9 27 44-70 30-56 (217)
297 1ukz_A Uridylate kinase; trans 64.5 5.4 0.00018 35.2 4.0 26 44-69 16-41 (203)
298 3sr0_A Adenylate kinase; phosp 64.4 5 0.00017 36.2 3.7 25 46-70 3-27 (206)
299 3u4q_B ATP-dependent helicase/ 64.1 6.7 0.00023 45.1 5.7 44 47-91 5-54 (1166)
300 2jaq_A Deoxyguanosine kinase; 64.0 5 0.00017 35.3 3.7 26 45-70 2-27 (205)
301 1ly1_A Polynucleotide kinase; 63.1 4.6 0.00016 34.7 3.2 21 45-65 4-24 (181)
302 2v54_A DTMP kinase, thymidylat 62.4 6.6 0.00023 34.5 4.2 31 44-74 5-36 (204)
303 2bdt_A BH3686; alpha-beta prot 62.3 6.8 0.00023 34.2 4.2 24 45-68 4-27 (189)
304 3nwj_A ATSK2; P loop, shikimat 61.9 6.3 0.00022 36.7 4.1 27 44-70 49-75 (250)
305 2z0h_A DTMP kinase, thymidylat 61.5 7.4 0.00025 33.9 4.3 28 46-73 3-33 (197)
306 4a15_A XPD helicase, ATP-depen 60.8 8.8 0.0003 40.8 5.4 62 257-321 438-501 (620)
307 2qor_A Guanylate kinase; phosp 60.2 6.7 0.00023 34.8 3.8 25 44-68 13-37 (204)
308 2pez_A Bifunctional 3'-phospho 60.1 9.1 0.00031 33.0 4.6 31 44-74 6-39 (179)
309 1knq_A Gluconate kinase; ALFA/ 60.0 7 0.00024 33.5 3.8 25 44-68 9-33 (175)
310 4akg_A Glutathione S-transfera 60.0 8.1 0.00028 48.2 5.5 57 33-91 1259-1317(2695)
311 2pbr_A DTMP kinase, thymidylat 59.2 8.8 0.0003 33.3 4.4 28 46-73 3-33 (195)
312 3tlx_A Adenylate kinase 2; str 59.2 7.2 0.00025 35.9 3.9 26 44-69 30-55 (243)
313 2xb4_A Adenylate kinase; ATP-b 59.0 6.7 0.00023 35.5 3.7 25 45-69 2-26 (223)
314 1q57_A DNA primase/helicase; d 58.4 8.7 0.0003 39.6 4.8 55 33-88 231-290 (503)
315 2grj_A Dephospho-COA kinase; T 58.3 7.5 0.00026 34.5 3.7 25 45-69 14-38 (192)
316 3tau_A Guanylate kinase, GMP k 58.0 6.9 0.00024 34.9 3.5 25 44-68 9-33 (208)
317 3oiy_A Reverse gyrase helicase 58.0 20 0.0007 35.3 7.4 56 266-322 62-125 (414)
318 3auy_A DNA double-strand break 57.9 5.6 0.00019 39.3 3.1 21 45-65 27-49 (371)
319 2px0_A Flagellar biosynthesis 57.7 11 0.00038 35.9 5.1 32 44-75 106-141 (296)
320 1uf9_A TT1252 protein; P-loop, 57.6 8.6 0.00029 33.7 4.1 23 44-66 9-31 (203)
321 4ag6_A VIRB4 ATPase, type IV s 57.4 9.9 0.00034 37.6 4.9 36 44-79 36-74 (392)
322 1kgd_A CASK, peripheral plasma 56.7 8.4 0.00029 33.5 3.7 24 44-67 6-29 (180)
323 3m6a_A ATP-dependent protease 56.6 12 0.00043 38.9 5.7 31 44-74 109-139 (543)
324 2ga8_A Hypothetical 39.9 kDa p 56.6 8.4 0.00029 37.9 4.0 28 40-67 21-48 (359)
325 3fdi_A Uncharacterized protein 56.5 10 0.00034 33.9 4.3 28 45-72 8-35 (201)
326 1ypw_A Transitional endoplasmi 56.4 7.1 0.00024 43.0 3.9 33 43-75 238-270 (806)
327 1nlf_A Regulatory protein REPA 56.3 20 0.00067 33.5 6.6 46 44-90 31-89 (279)
328 3ake_A Cytidylate kinase; CMP 56.2 8.9 0.0003 33.7 3.9 25 45-69 4-28 (208)
329 2if2_A Dephospho-COA kinase; a 55.8 9.3 0.00032 33.7 4.0 23 45-68 3-25 (204)
330 3uie_A Adenylyl-sulfate kinase 55.8 10 0.00035 33.5 4.2 24 44-67 26-49 (200)
331 1jjv_A Dephospho-COA kinase; P 55.4 8.3 0.00028 34.1 3.6 25 45-70 4-28 (206)
332 1cke_A CK, MSSA, protein (cyti 55.0 8.7 0.0003 34.4 3.7 24 45-68 7-30 (227)
333 1f2t_A RAD50 ABC-ATPase; DNA d 54.2 7.8 0.00027 32.7 3.0 16 45-60 25-40 (149)
334 3b85_A Phosphate starvation-in 53.9 13 0.00046 33.3 4.7 34 24-60 5-39 (208)
335 2yvu_A Probable adenylyl-sulfa 53.8 7.7 0.00026 33.7 3.0 31 44-74 14-47 (186)
336 2plr_A DTMP kinase, probable t 53.3 8.8 0.0003 33.8 3.4 25 45-69 6-30 (213)
337 2xxa_A Signal recognition part 53.3 12 0.00042 37.8 4.8 33 44-76 101-137 (433)
338 2j37_W Signal recognition part 52.6 24 0.00081 36.4 6.9 33 44-76 102-137 (504)
339 3vkg_A Dynein heavy chain, cyt 52.6 11 0.00037 47.6 4.9 56 33-90 1296-1353(3245)
340 1gm5_A RECG; helicase, replica 52.1 20 0.0007 39.1 6.6 55 267-322 416-479 (780)
341 3ney_A 55 kDa erythrocyte memb 51.8 11 0.00039 33.6 3.8 25 44-68 20-44 (197)
342 2gza_A Type IV secretion syste 51.8 13 0.00045 36.5 4.7 32 34-67 168-199 (361)
343 1cr0_A DNA primase/helicase; R 51.3 16 0.00055 34.4 5.1 45 33-77 24-73 (296)
344 1vma_A Cell division protein F 51.3 15 0.00051 35.3 4.8 31 45-75 106-139 (306)
345 1zu4_A FTSY; GTPase, signal re 49.8 15 0.0005 35.5 4.5 31 45-75 107-140 (320)
346 2h92_A Cytidylate kinase; ross 49.7 13 0.00045 33.0 4.0 25 45-69 5-29 (219)
347 1vht_A Dephospho-COA kinase; s 49.6 13 0.00043 33.2 3.9 23 45-68 6-28 (218)
348 2wwf_A Thymidilate kinase, put 49.3 11 0.00039 33.1 3.5 24 44-67 11-34 (212)
349 2eyu_A Twitching motility prot 49.3 10 0.00035 35.5 3.2 21 44-64 26-46 (261)
350 2j41_A Guanylate kinase; GMP, 49.2 11 0.00039 33.0 3.4 24 44-67 7-30 (207)
351 1q3t_A Cytidylate kinase; nucl 48.7 14 0.00048 33.5 4.1 25 44-68 17-41 (236)
352 1lkx_A Myosin IE heavy chain; 48.5 15 0.0005 39.7 4.6 34 31-64 82-115 (697)
353 1nn5_A Similar to deoxythymidy 48.2 12 0.00042 33.0 3.5 24 44-67 10-33 (215)
354 2v3c_C SRP54, signal recogniti 48.1 10 0.00035 38.3 3.3 32 44-75 100-134 (432)
355 3r20_A Cytidylate kinase; stru 47.6 13 0.00046 34.1 3.7 24 45-68 11-34 (233)
356 3sfz_A APAF-1, apoptotic pepti 47.2 1.1E+02 0.0038 34.6 12.2 43 24-66 126-170 (1249)
357 3kta_A Chromosome segregation 46.9 14 0.00048 31.7 3.6 21 45-65 28-48 (182)
358 4e22_A Cytidylate kinase; P-lo 46.9 15 0.00052 33.8 4.0 26 44-69 28-53 (252)
359 1rz3_A Hypothetical protein rb 46.8 19 0.00064 31.8 4.5 30 45-74 24-56 (201)
360 2woo_A ATPase GET3; tail-ancho 46.8 21 0.00073 34.4 5.2 32 45-76 21-55 (329)
361 3vr4_A V-type sodium ATPase ca 46.7 25 0.00086 36.8 5.9 59 31-90 220-282 (600)
362 1m7g_A Adenylylsulfate kinase; 46.7 20 0.00069 31.8 4.7 24 44-67 26-49 (211)
363 3tqf_A HPR(Ser) kinase; transf 46.2 14 0.00047 32.5 3.3 23 44-66 17-39 (181)
364 1uj2_A Uridine-cytidine kinase 46.1 14 0.00046 34.1 3.5 25 45-69 24-48 (252)
365 4anj_A Unconventional myosin-V 46.1 16 0.00054 41.3 4.6 35 30-64 131-165 (1052)
366 2v26_A Myosin VI; calmodulin-b 46.0 16 0.00056 39.8 4.6 34 31-64 128-161 (784)
367 1w9i_A Myosin II heavy chain; 45.6 17 0.00058 39.6 4.6 33 31-63 160-192 (770)
368 3tr0_A Guanylate kinase, GMP k 45.6 12 0.00041 32.8 3.0 23 45-67 9-31 (205)
369 4akg_A Glutathione S-transfera 45.6 19 0.00064 45.0 5.5 55 23-77 624-679 (2695)
370 3a00_A Guanylate kinase, GMP k 45.4 15 0.00052 31.9 3.6 22 45-66 3-24 (186)
371 4ddu_A Reverse gyrase; topoiso 45.1 35 0.0012 38.9 7.3 56 266-322 119-182 (1104)
372 2ehv_A Hypothetical protein PH 45.1 21 0.00073 32.1 4.7 35 44-78 31-69 (251)
373 3cio_A ETK, tyrosine-protein k 45.0 31 0.0011 32.7 6.0 30 46-75 107-140 (299)
374 2p6n_A ATP-dependent RNA helic 44.8 47 0.0016 29.0 6.8 68 53-125 39-115 (191)
375 3jvv_A Twitching mobility prot 44.7 12 0.00042 36.7 3.1 31 33-64 114-144 (356)
376 3qks_A DNA double-strand break 44.6 13 0.00044 33.1 3.0 16 45-60 25-40 (203)
377 1lvg_A Guanylate kinase, GMP k 44.4 14 0.00047 32.7 3.2 22 44-65 5-26 (198)
378 3ice_A Transcription terminati 44.3 28 0.00094 34.8 5.5 40 26-65 157-196 (422)
379 4db1_A Myosin-7; S1DC, cardiac 44.3 18 0.00062 39.4 4.6 35 30-64 158-192 (783)
380 1w7j_A Myosin VA; motor protei 44.2 18 0.00062 39.5 4.6 34 31-64 144-177 (795)
381 3f9v_A Minichromosome maintena 44.0 15 0.00052 38.7 3.9 24 45-68 329-352 (595)
382 1byi_A Dethiobiotin synthase; 43.9 21 0.00071 31.8 4.4 28 49-76 8-38 (224)
383 3iqw_A Tail-anchored protein t 43.6 25 0.00085 34.1 5.1 41 36-76 9-52 (334)
384 2pt7_A CAG-ALFA; ATPase, prote 43.1 15 0.00053 35.5 3.5 33 32-66 162-194 (330)
385 2qt1_A Nicotinamide riboside k 43.1 14 0.0005 32.5 3.1 23 45-67 23-45 (207)
386 2f6r_A COA synthase, bifunctio 42.6 17 0.00057 34.3 3.6 23 45-68 77-99 (281)
387 2ocp_A DGK, deoxyguanosine kin 42.5 20 0.0007 32.5 4.1 25 45-69 4-28 (241)
388 2ewv_A Twitching motility prot 42.2 14 0.00048 36.5 3.1 21 44-64 137-157 (372)
389 3nwn_A Kinesin-like protein KI 41.3 20 0.00067 35.3 4.0 17 45-61 107-123 (359)
390 2hf9_A Probable hydrogenase ni 41.1 31 0.0011 30.6 5.1 38 30-67 25-62 (226)
391 2bbw_A Adenylate kinase 4, AK4 40.8 18 0.00061 33.0 3.4 25 44-68 28-52 (246)
392 1kk8_A Myosin heavy chain, str 40.7 19 0.00064 39.7 4.0 33 31-63 157-189 (837)
393 3l0o_A Transcription terminati 40.7 40 0.0014 33.7 6.0 40 26-65 158-197 (427)
394 2v9p_A Replication protein E1; 40.6 12 0.00041 36.0 2.2 30 44-73 127-156 (305)
395 3asz_A Uridine kinase; cytidin 40.6 21 0.00072 31.5 3.8 24 45-68 8-31 (211)
396 2jgn_A DBX, DDX3, ATP-dependen 40.4 1.2E+02 0.004 26.1 8.7 64 53-120 29-103 (185)
397 3zq6_A Putative arsenical pump 40.3 25 0.00085 33.8 4.5 32 45-76 16-50 (324)
398 1g8x_A Myosin II heavy chain f 40.2 23 0.00078 40.0 4.7 33 31-63 160-192 (1010)
399 3gmt_A Adenylate kinase; ssgci 40.1 22 0.00076 32.5 3.9 27 45-71 10-36 (230)
400 1ypw_A Transitional endoplasmi 39.9 7.8 0.00027 42.6 0.9 28 43-70 511-538 (806)
401 1ltq_A Polynucleotide kinase; 39.7 24 0.00081 33.1 4.2 23 45-67 4-26 (301)
402 2oze_A ORF delta'; para, walke 39.5 34 0.0012 32.0 5.4 24 51-74 45-71 (298)
403 1hyq_A MIND, cell division inh 39.3 26 0.00089 32.1 4.3 29 47-75 7-38 (263)
404 2ycu_A Non muscle myosin 2C, a 39.1 23 0.00079 39.8 4.5 33 31-63 134-166 (995)
405 3qf7_A RAD50; ABC-ATPase, ATPa 39.0 17 0.00059 35.7 3.2 21 45-65 25-47 (365)
406 1yrb_A ATP(GTP)binding protein 38.9 27 0.00091 31.9 4.4 31 45-75 16-48 (262)
407 3b9q_A Chloroplast SRP recepto 38.6 27 0.00091 33.3 4.4 31 45-75 102-135 (302)
408 3qkt_A DNA double-strand break 38.5 17 0.00058 35.2 3.0 16 45-60 25-40 (339)
409 1svm_A Large T antigen; AAA+ f 38.4 24 0.00081 34.9 4.1 31 43-73 169-199 (377)
410 1ihu_A Arsenical pump-driving 38.4 30 0.001 36.3 5.1 33 44-76 9-44 (589)
411 1dek_A Deoxynucleoside monopho 38.2 40 0.0014 31.0 5.3 43 46-90 4-46 (241)
412 3oaa_A ATP synthase subunit al 38.2 69 0.0024 32.9 7.5 60 31-91 150-215 (513)
413 1v8k_A Kinesin-like protein KI 38.2 25 0.00085 35.2 4.2 17 46-62 158-174 (410)
414 1g3q_A MIND ATPase, cell divis 38.1 24 0.00081 31.7 3.8 28 49-76 9-39 (237)
415 1z6t_A APAF-1, apoptotic prote 38.1 41 0.0014 35.0 6.2 42 23-64 125-168 (591)
416 1ry6_A Internal kinesin; kines 38.0 20 0.0007 35.2 3.5 16 47-62 89-104 (360)
417 1xjc_A MOBB protein homolog; s 38.0 20 0.00069 31.1 3.1 31 45-75 6-39 (169)
418 1z6g_A Guanylate kinase; struc 37.8 36 0.0012 30.4 4.9 24 44-67 24-47 (218)
419 2dfs_A Myosin-5A; myosin-V, in 37.7 25 0.00086 39.9 4.6 34 31-64 144-177 (1080)
420 4gp7_A Metallophosphoesterase; 37.7 15 0.00052 31.5 2.3 18 45-62 11-28 (171)
421 3p32_A Probable GTPase RV1496/ 37.6 62 0.0021 31.3 7.0 34 43-76 79-115 (355)
422 1w36_B RECB, exodeoxyribonucle 37.6 36 0.0012 39.1 6.0 47 45-91 18-79 (1180)
423 3vkg_A Dynein heavy chain, cyt 37.5 39 0.0013 42.9 6.4 54 24-79 584-640 (3245)
424 3ug7_A Arsenical pump-driving 37.4 27 0.00094 33.9 4.3 31 45-75 28-61 (349)
425 2wsm_A Hydrogenase expression/ 37.3 30 0.001 30.5 4.3 43 33-75 20-64 (221)
426 1rj9_A FTSY, signal recognitio 37.2 32 0.0011 32.8 4.7 32 44-75 103-137 (304)
427 1tf7_A KAIC; homohexamer, hexa 37.2 43 0.0015 34.5 6.1 55 33-88 269-328 (525)
428 3dc4_A Kinesin-like protein NO 37.1 24 0.00083 34.4 3.8 15 46-60 98-112 (344)
429 2ck3_D ATP synthase subunit be 36.5 41 0.0014 34.4 5.5 60 31-91 141-207 (482)
430 3c8u_A Fructokinase; YP_612366 36.4 19 0.00066 31.9 2.8 22 44-65 23-44 (208)
431 3q9l_A Septum site-determining 36.1 26 0.00089 31.9 3.8 27 49-75 9-38 (260)
432 1sq5_A Pantothenate kinase; P- 36.0 63 0.0021 30.6 6.6 22 45-66 82-103 (308)
433 2ph1_A Nucleotide-binding prot 36.0 26 0.0009 32.2 3.8 27 49-75 25-54 (262)
434 4etp_A Kinesin-like protein KA 35.7 24 0.00082 35.3 3.6 15 47-61 145-159 (403)
435 1yks_A Genome polyprotein [con 35.7 53 0.0018 32.9 6.3 56 62-121 171-231 (440)
436 3gqb_A V-type ATP synthase alp 35.6 25 0.00086 36.6 3.8 58 32-90 210-271 (578)
437 2obl_A ESCN; ATPase, hydrolase 35.5 39 0.0014 32.9 5.1 38 31-68 59-96 (347)
438 3gbj_A KIF13B protein; kinesin 35.5 29 0.00099 34.0 4.1 16 46-61 96-111 (354)
439 2nr8_A Kinesin-like protein KI 35.4 29 0.001 34.0 4.1 15 47-61 108-122 (358)
440 2ius_A DNA translocase FTSK; n 35.1 22 0.00075 36.7 3.3 21 44-64 168-188 (512)
441 3e70_C DPA, signal recognition 34.9 51 0.0018 31.7 5.8 32 44-75 130-164 (328)
442 2woj_A ATPase GET3; tail-ancho 34.8 40 0.0014 32.9 5.1 32 45-76 20-56 (354)
443 1t5i_A C_terminal domain of A 34.8 1.2E+02 0.004 25.7 7.7 64 53-120 15-88 (172)
444 1t5c_A CENP-E protein, centrom 34.7 31 0.001 33.7 4.1 17 45-61 80-96 (349)
445 3tmk_A Thymidylate kinase; pho 34.5 42 0.0014 30.2 4.8 28 44-71 6-33 (216)
446 2vvg_A Kinesin-2; motor protei 34.4 29 0.00098 34.0 3.9 16 45-60 92-107 (350)
447 3mfy_A V-type ATP synthase alp 34.3 25 0.00085 36.7 3.5 59 31-90 215-277 (588)
448 2r9v_A ATP synthase subunit al 34.2 33 0.0011 35.3 4.4 59 31-90 163-227 (515)
449 3hdt_A Putative kinase; struct 34.0 30 0.001 31.3 3.8 27 45-71 16-42 (223)
450 2og2_A Putative signal recogni 33.9 34 0.0012 33.5 4.4 31 45-75 159-192 (359)
451 2iut_A DNA translocase FTSK; n 33.9 23 0.00078 37.1 3.2 47 44-96 215-267 (574)
452 3io3_A DEHA2D07832P; chaperone 33.6 44 0.0015 32.5 5.1 42 35-76 10-56 (348)
453 4a14_A Kinesin, kinesin-like p 33.6 30 0.001 33.8 3.8 15 46-60 87-101 (344)
454 3lre_A Kinesin-like protein KI 33.5 27 0.00092 34.2 3.5 16 46-61 109-124 (355)
455 2h58_A Kinesin-like protein KI 33.4 32 0.0011 33.3 4.0 27 34-61 73-99 (330)
456 3zvl_A Bifunctional polynucleo 33.2 19 0.00064 36.1 2.4 24 44-67 259-282 (416)
457 1ye8_A Protein THEP1, hypothet 33.2 25 0.00086 30.5 3.0 23 45-67 2-24 (178)
458 4dzz_A Plasmid partitioning pr 33.2 27 0.00092 30.4 3.2 26 50-75 9-37 (206)
459 1fuk_A Eukaryotic initiation f 32.9 1.7E+02 0.0057 24.3 8.3 64 56-124 17-90 (165)
460 1bg2_A Kinesin; motor protein, 32.8 32 0.0011 33.2 3.9 17 45-61 80-96 (325)
461 1odf_A YGR205W, hypothetical 3 32.7 25 0.00086 33.3 3.1 23 45-67 33-55 (290)
462 1gtv_A TMK, thymidylate kinase 32.5 13 0.00045 32.8 1.0 23 46-68 3-25 (214)
463 3lnc_A Guanylate kinase, GMP k 32.3 19 0.00066 32.4 2.1 21 44-64 28-48 (231)
464 2ck3_A ATP synthase subunit al 32.2 37 0.0013 35.0 4.3 36 31-66 150-185 (510)
465 2heh_A KIF2C protein; kinesin, 32.1 31 0.001 34.3 3.7 17 46-62 138-154 (387)
466 2qe7_A ATP synthase subunit al 32.1 36 0.0012 35.0 4.2 60 31-91 150-215 (502)
467 3la6_A Tyrosine-protein kinase 31.9 39 0.0013 31.8 4.3 26 50-75 100-128 (286)
468 3b6u_A Kinesin-like protein KI 31.9 36 0.0012 33.5 4.1 17 45-61 104-120 (372)
469 2y65_A Kinesin, kinesin heavy 31.8 33 0.0011 33.7 3.9 17 45-61 87-103 (365)
470 3u06_A Protein claret segregat 31.8 28 0.00094 34.9 3.3 28 33-61 130-157 (412)
471 1x88_A Kinesin-like protein KI 31.0 37 0.0013 33.3 4.0 16 46-61 92-107 (359)
472 2v6i_A RNA helicase; membrane, 31.0 60 0.0021 32.4 5.8 54 64-121 167-225 (431)
473 3bfv_A CAPA1, CAPB2, membrane 31.0 35 0.0012 31.8 3.8 24 51-74 91-117 (271)
474 1znw_A Guanylate kinase, GMP k 31.0 32 0.0011 30.3 3.4 22 267-288 177-198 (207)
475 2hjv_A ATP-dependent RNA helic 30.7 1.4E+02 0.0047 24.8 7.4 68 53-125 19-96 (163)
476 4eaq_A DTMP kinase, thymidylat 30.6 33 0.0011 31.1 3.4 25 44-68 27-51 (229)
477 2axn_A 6-phosphofructo-2-kinas 30.5 40 0.0014 34.9 4.4 31 45-75 37-70 (520)
478 2owm_A Nckin3-434, related to 30.0 38 0.0013 34.3 4.0 16 46-61 140-155 (443)
479 2zfi_A Kinesin-like protein KI 29.9 40 0.0014 33.2 4.0 17 45-61 92-108 (366)
480 1x6v_B Bifunctional 3'-phospho 29.9 44 0.0015 35.4 4.6 31 44-74 53-86 (630)
481 3t0q_A AGR253WP; kinesin, alph 29.5 30 0.001 33.8 3.1 14 48-61 91-104 (349)
482 3tqc_A Pantothenate kinase; bi 29.4 50 0.0017 31.8 4.6 22 46-67 95-116 (321)
483 3cwq_A Para family chromosome 29.4 47 0.0016 29.4 4.2 38 47-86 5-47 (209)
484 2f1r_A Molybdopterin-guanine d 29.2 17 0.00059 31.4 1.2 22 45-66 4-25 (171)
485 1goj_A Kinesin, kinesin heavy 29.1 36 0.0012 33.3 3.6 17 45-61 83-99 (355)
486 2wbe_C Bipolar kinesin KRP-130 29.1 40 0.0014 33.3 3.9 17 45-61 103-119 (373)
487 3end_A Light-independent proto 29.1 51 0.0017 31.0 4.6 32 44-75 42-76 (307)
488 3vr4_D V-type sodium ATPase su 29.1 42 0.0014 34.1 4.1 59 31-90 139-207 (465)
489 3cob_A Kinesin heavy chain-lik 29.0 34 0.0011 33.7 3.3 27 34-61 72-98 (369)
490 1oyw_A RECQ helicase, ATP-depe 28.7 1E+02 0.0036 31.6 7.3 54 268-322 65-123 (523)
491 3qxc_A Dethiobiotin synthetase 28.7 51 0.0017 30.2 4.4 30 45-74 23-56 (242)
492 1s96_A Guanylate kinase, GMP k 28.4 45 0.0015 30.0 3.9 24 44-67 17-40 (219)
493 2v1x_A ATP-dependent DNA helic 28.3 99 0.0034 32.4 7.1 54 268-322 84-144 (591)
494 1np6_A Molybdopterin-guanine d 28.1 36 0.0012 29.5 3.0 22 45-66 8-29 (174)
495 1g8f_A Sulfate adenylyltransfe 28.0 53 0.0018 33.8 4.8 43 26-68 376-420 (511)
496 3kjh_A CO dehydrogenase/acetyl 27.9 32 0.0011 30.9 2.8 28 48-75 5-35 (254)
497 3ea0_A ATPase, para family; al 27.9 59 0.002 29.0 4.7 26 50-75 12-41 (245)
498 1knx_A Probable HPR(Ser) kinas 27.9 35 0.0012 32.8 3.1 22 44-65 148-169 (312)
499 2yhs_A FTSY, cell division pro 27.5 50 0.0017 33.9 4.4 30 45-74 295-327 (503)
500 3bfn_A Kinesin-like protein KI 27.4 35 0.0012 33.9 3.1 34 27-61 76-117 (388)
No 1
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.9e-46 Score=390.19 Aligned_cols=326 Identities=30% Similarity=0.452 Sum_probs=268.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 19 ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 19 ~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.++..++|+|||.+++..++.++ +++|++|||+|||++++.++...+.++|||||+++|+.||.++|.+| + ..
T Consensus 87 ~~~~~~~l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~-~---~~ 159 (472)
T 2fwr_A 87 YFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF-G---EE 159 (472)
T ss_dssp CCCCCCCBCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGG-C---GG
T ss_pred cccCCCCcCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhC-C---Cc
Confidence 45567899999999999988775 79999999999999999999988999999999999999999999995 3 35
Q ss_pred -EEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEE
Q 010991 99 -ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGL 177 (496)
Q Consensus 99 -v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~L 177 (496)
++.++|+... ..+|+|+||+++... .+.+ ...|++||+||||++.++.|+.++..+.+.++|+|
T Consensus 160 ~v~~~~g~~~~----~~~Ivv~T~~~l~~~----------~~~~-~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~l 224 (472)
T 2fwr_A 160 YVGEFSGRIKE----LKPLTVSTYDSAYVN----------AEKL-GNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGL 224 (472)
T ss_dssp GEEEBSSSCBC----CCSEEEEEHHHHHHT----------HHHH-TTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEE
T ss_pred ceEEECCCcCC----cCCEEEEEcHHHHHH----------HHHh-cCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEE
Confidence 8889888664 478999999998644 2233 25799999999999999999999999999999999
Q ss_pred eecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhc-------------------
Q 010991 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN------------------- 238 (496)
Q Consensus 178 TATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~------------------- 238 (496)
||||.+.++....+..++||..++..+.++ ..+++.++.+..+.++++++....|-....
T Consensus 225 SATp~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (472)
T 2fwr_A 225 TATFEREDGRHEILKEVVGGKVFELFPDSL-AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDF 303 (472)
T ss_dssp ESCCCCTTSGGGSHHHHTCCEEEECCHHHH-TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSS
T ss_pred ecCccCCCCHHHHHHHHhCCeEeecCHHHH-hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhH
Confidence 999999999888899999999999999998 588899998888888888876544321000
Q ss_pred -------------------HHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcCCCeEEcCCCH
Q 010991 239 -------------------SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299 (496)
Q Consensus 239 -------------------~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~~~~i~G~~~~ 299 (496)
......+.+..+.|+..+..++..+ +++++||||+++..++.+++.|++..+||+++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~ 380 (472)
T 2fwr_A 304 NKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFLIPAITHRTSR 380 (472)
T ss_dssp TTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCS
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHhCcceeeCCCCH
Confidence 0011122344566888888888664 488999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEE
Q 010991 300 VERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 364 (496)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~ 364 (496)
.+|.++++.|+++ ++++||+|+ +++.++|+.++.||+||+||.|+++ ..+++|+
T Consensus 381 ~~R~~~~~~F~~g-~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k----------~~~~i~~ 449 (472)
T 2fwr_A 381 EEREEILEGFRTG-RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK----------KEAVLYE 449 (472)
T ss_dssp HHHHTHHHHHHHS-SCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTT----------CCEEEEE
T ss_pred HHHHHHHHHHhCC-CCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCC----------ceEEEEE
Confidence 9999999999998 899998888 4577899999999999999999431 5799999
Q ss_pred EEcCCChHHHHHHHHHH
Q 010991 365 LVSTDTQEMFYSTKRQQ 381 (496)
Q Consensus 365 lvs~~t~e~~~~~~r~~ 381 (496)
+++++|.|++++++|++
T Consensus 450 lv~~~t~ee~~~~~r~~ 466 (472)
T 2fwr_A 450 LISRGTGEVNTARRRKN 466 (472)
T ss_dssp EEECSCC----------
T ss_pred EEeCCCchHHHHHHHHH
Confidence 99999999999988764
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-43 Score=397.03 Aligned_cols=334 Identities=18% Similarity=0.244 Sum_probs=260.8
Q ss_pred CCCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 22 PHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
...+|||||.+++.+++.. ..+++|||+++||+|||+++++++..+ .+++|||||.+ |+.||.++|.+|+
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~qW~~E~~~~~-- 309 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLS-TMPAWLDTFEKWA-- 309 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTT-THHHHHHHHHHHS--
T ss_pred CCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECch-HHHHHHHHHHHHC--
Confidence 3578999999999977521 223589999999999999999988654 57999999955 7899999999995
Q ss_pred CCCcEEEEcCCcccc-----------------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCccc
Q 010991 95 QDDQICRFTSDSKER-----------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~-----------------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~ 157 (496)
|...+.+++|+.... .....+|+||||+++... ...+....|++||+||||++
T Consensus 310 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~----------~~~l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 310 PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD----------RAELGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT----------HHHHHTSEEEEEEETTGGGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh----------HHHHhcCCcceeehhhhhhh
Confidence 567788888875421 123578999999999754 34566679999999999999
Q ss_pred Cch--HHHHHHHhccCccEEEEeecCCCCccc--------------------------------hhhhhhhhCccccccC
Q 010991 158 PAH--MFRKVISLTKSHCKLGLTATLVREDER--------------------------------ITDLNFLIGPKLYEAN 203 (496)
Q Consensus 158 ~~~--~~~~~l~~l~~~~~L~LTATp~r~d~~--------------------------------~~~l~~l~gp~~~~~~ 203 (496)
++. .+.+.+..+.+.++|+|||||+++... ...|..+++|.+++..
T Consensus 380 kn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~ 459 (800)
T 3mwy_W 380 KNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRL 459 (800)
T ss_dssp CCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECC
T ss_pred cCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhh
Confidence 754 566788888999999999999865432 1233445566666666
Q ss_pred HHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH---------------------HHHH-------------------
Q 010991 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS---------------------KKKQ------------------- 243 (496)
Q Consensus 204 ~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~---------------------~~~~------------------- 243 (496)
..++ ...+++.....++|+|++.+...|...... ..+.
T Consensus 460 k~dv--~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 537 (800)
T 3mwy_W 460 KKDV--EKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKF 537 (800)
T ss_dssp GGGG--TTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC
T ss_pred HHhh--hhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhc
Confidence 6555 356888889999999999876655321000 0000
Q ss_pred -----------HhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHH
Q 010991 244 -----------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQ 307 (496)
Q Consensus 244 -----------~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~ 307 (496)
.....+++|+.++..++..+. ..|+|+||||+++.+++.|++.|. +..+||+++..+|.++++
T Consensus 538 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~ 616 (800)
T 3mwy_W 538 GDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISID 616 (800)
T ss_dssp ----CCSHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHH
T ss_pred ccccccHHHHHHHhhhcChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHH
Confidence 011235679999999998876 789999999999999999999993 678999999999999999
Q ss_pred HHhcCCCcc--EEEEee----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCC
Q 010991 308 AFKCSRDLN--TIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 308 ~F~~~~~~~--vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
+|+++ ... ++++|+ +++.+|||..+.||+||++|+| |.+.|.||.|++.+
T Consensus 617 ~F~~~-~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG-----------Q~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 617 HFNSP-DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG-----------QKNHVMVYRLVSKD 684 (800)
T ss_dssp TTSST-TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSS-----------CCSCEEEEEEEETT
T ss_pred HhhCC-CCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcC-----------CCceEEEEEEecCC
Confidence 99986 333 566665 6788999999999999999999 55679999999999
Q ss_pred ChHHHHHHHHHHHH
Q 010991 370 TQEMFYSTKRQQFL 383 (496)
Q Consensus 370 t~e~~~~~~r~~~l 383 (496)
|+|+.+..+.++.+
T Consensus 685 TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 685 TVEEEVLERARKKM 698 (800)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999887665554
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3e-43 Score=373.94 Aligned_cols=332 Identities=20% Similarity=0.245 Sum_probs=246.3
Q ss_pred cCCCCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 20 LKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
......|||||.+++.++... ..++++||+++||+|||+++++++..+ .+++|||||++ |+.||.++|.+|+
T Consensus 32 ~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~- 109 (500)
T 1z63_A 32 YNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFA- 109 (500)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHC-
T ss_pred hhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHC-
Confidence 344578999999999876421 112489999999999999999888764 26899999965 8899999999995
Q ss_pred CCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHHHHHHhccC
Q 010991 94 IQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKS 171 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~l~~ 171 (496)
+...+.+++|+.........+|+|+||+++... ..+....|++||+||||++++. ...+.+..+.+
T Consensus 110 -~~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~-----------~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~ 177 (500)
T 1z63_A 110 -PHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRD-----------TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKS 177 (500)
T ss_dssp -TTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTC-----------HHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCE
T ss_pred -CCceEEEEecCchhccccCCcEEEeeHHHHhcc-----------chhcCCCcCEEEEeCccccCCHhHHHHHHHHhhcc
Confidence 456788888876543335678999999999754 1255679999999999999876 35567777888
Q ss_pred ccEEEEeecCCCCccch-----------------------------------hhhhhhhCccccccCHHHHHhCCCCCcc
Q 010991 172 HCKLGLTATLVREDERI-----------------------------------TDLNFLIGPKLYEANWLDLVKGGFIANV 216 (496)
Q Consensus 172 ~~~L~LTATp~r~d~~~-----------------------------------~~l~~l~gp~~~~~~~~~l~~~g~l~~~ 216 (496)
.++++|||||.+++... ..+..++.|..++....+......+++.
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSE
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCC
Confidence 89999999998764321 1122333444444333322223467788
Q ss_pred eEEEEEcCCCHHHHHHHHhhhcH------------HHHHHh--------hh-------------hCCCcHHHHHHHHHHh
Q 010991 217 QCAEVWCPMTKEFFSEYLKKENS------------KKKQAL--------YV-------------MNPNKFRACEFLIRFH 263 (496)
Q Consensus 217 ~~~~v~~~~~~~~~~~yl~~~~~------------~~~~~l--------~~-------------~~~~K~~~l~~ll~~~ 263 (496)
....+++++++.+...|...... .....+ .+ ..+.|+..+..++...
T Consensus 258 ~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 258 IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH
Confidence 88889999999876655421100 000000 11 1246888888888766
Q ss_pred hhcCCCeEEEEeccHHHHHHHHHHcC------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------------
Q 010991 264 EQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK--------------- 322 (496)
Q Consensus 264 ~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--------------- 322 (496)
. ..++|+||||+++.+++.++..|. +..+||+++..+|.+++++|++++.++++++++
T Consensus 338 ~-~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 338 L-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp H-TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred H-ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 5 578999999999999999988873 678999999999999999999986677666665
Q ss_pred -ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHH
Q 010991 323 -ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYST 377 (496)
Q Consensus 323 -i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~ 377 (496)
+++.+||+..+.||+||++|.| |.+.+.+|+|++.+|+|+.+..
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~G-----------q~~~v~v~~lv~~~tiee~i~~ 461 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIG-----------QTRNVIVHKLISVGTLEEKIDQ 461 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTT-----------TTSCEEEEEEEETTSHHHHTHH
T ss_pred EEeCCCCCcchHHHHHHHHHHcC-----------CCCeeEEEEEEeCCCHHHHHHH
Confidence 5788899999999999999999 5567999999999999997754
No 4
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-41 Score=371.05 Aligned_cols=335 Identities=16% Similarity=0.212 Sum_probs=244.5
Q ss_pred CCCCcHHHHHHHHHHHhc------CCCcceEEEeCCCCChHHHHHHHHHhc----------CCcEEEEEeChHHHHHHHH
Q 010991 23 HAQPRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAF 86 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~------~~~~~~il~~~tG~GKTl~~i~~~~~~----------~~~~LIl~P~~~L~~Qw~~ 86 (496)
...|||||.+++.+++.. ...++|||+++||+|||+++++++..+ .+++|||||+ +|+.||.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 468999999999987631 123579999999999999999988653 2369999997 58999999
Q ss_pred HHHHhhCCCCCcEEEEcCCcccc--------c-----cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcC
Q 010991 87 QFKLWSTIQDDQICRFTSDSKER--------F-----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 153 (496)
Q Consensus 87 e~~~~~~~~~~~v~~~~g~~~~~--------~-----~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDE 153 (496)
+|.+|++. ...+..+.++.+.. . ....+|+|+||+++.... +.+....|++||+||
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~----------~~l~~~~~~~vI~DE 200 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA----------EVLHKGKVGLVICDE 200 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----------TTTTTSCCCEEEETT
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH----------HHhhcCCccEEEEEC
Confidence 99999753 23445555543211 0 124789999999997542 334457999999999
Q ss_pred CcccCch--HHHHHHHhccCccEEEEeecCCCCccchh-hh---------------------------------------
Q 010991 154 VHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DL--------------------------------------- 191 (496)
Q Consensus 154 aH~~~~~--~~~~~l~~l~~~~~L~LTATp~r~d~~~~-~l--------------------------------------- 191 (496)
||++++. ...+.+..+.+.++|+|||||++++-..- .+
T Consensus 201 aH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 201 GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp GGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred ceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 9999875 44557777899999999999998763311 11
Q ss_pred -------hhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH---------------------HHHH
Q 010991 192 -------NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS---------------------KKKQ 243 (496)
Q Consensus 192 -------~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~---------------------~~~~ 243 (496)
..++.|.+++....++ ...+++.....++|++++.+...|..-... .-+.
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v--~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDIL--SKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGG--GGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhH--hhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence 1122233333333222 346788888899999999876655321100 0000
Q ss_pred H------hh---------------------------hhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-
Q 010991 244 A------LY---------------------------VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR- 289 (496)
Q Consensus 244 ~------l~---------------------------~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~- 289 (496)
+ +. ...++|+.++..++.......++|+||||+++.+++.++..|.
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 0 00 0124578888888877653568999999999999999999883
Q ss_pred ----CCeEEcCCCHHHHHHHHHHHhcCCCcc--EEEEee----------------ccCCCCChhHHHHHccCcCcCCCCc
Q 010991 290 ----KPMIYGATSHVERTKILQAFKCSRDLN--TIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKL 347 (496)
Q Consensus 290 ----~~~i~G~~~~~eR~~il~~F~~~~~~~--vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~ 347 (496)
+..+||+++.++|.+++++|+++ ... ++++|+ +++.+|||..+.|++||++|+|
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~-~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~G--- 514 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNP-SSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG--- 514 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHST-TCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTT---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCC-CCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcC---
Confidence 56799999999999999999997 433 566555 6788999999999999999999
Q ss_pred cccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHH
Q 010991 348 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 383 (496)
Q Consensus 348 ~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l 383 (496)
|.+.|++|+|++.+|+|+.+........
T Consensus 515 --------q~~~v~v~~lv~~~tiEe~i~~~~~~K~ 542 (644)
T 1z3i_X 515 --------QKKTCYIYRLLSTGTIEEKILQRQAHKK 542 (644)
T ss_dssp --------CCSCEEEEEEEETTSHHHHHHHHHHHHH
T ss_pred --------CCCceEEEEEEECCCHHHHHHHHHHHHH
Confidence 5567999999999999998875544433
No 5
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7e-39 Score=341.07 Aligned_cols=344 Identities=17% Similarity=0.213 Sum_probs=253.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.++|+|||.+|+..++.+. +++|++|||+|||++++.++.. .+.++|||||+++|+.||.++|.+|...+...
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp EECCCHHHHHHHHHHHHHS---EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCCHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 4589999999999998874 8999999999999998877765 23499999999999999999999997666667
Q ss_pred EEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc-cCccEE
Q 010991 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKL 175 (496)
Q Consensus 99 v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l-~~~~~L 175 (496)
+..+.|+.... .....+|+|+||+.+..... .. ..+|++||+||||++.+..+..++..+ ...++|
T Consensus 188 v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~---------~~--~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK---------EW--FSQFGMMMNDECHLATGKSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCG---------GG--GGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccccccCCcEEEEeHHHHhhchh---------hh--hhcCCEEEEECCcCCCcccHHHHHHhcccCcEEE
Confidence 88887775431 22568999999998865411 11 257999999999999999999888887 566899
Q ss_pred EEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHH
Q 010991 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255 (496)
Q Consensus 176 ~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~ 255 (496)
+|||||.+.......+..++++..+.....+++..|++.++.+..+.+.++.......- ................|...
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLK-GKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHT-TCCHHHHHHHHHTCHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhcccc-ccchHHHHHHHhccHHHHHH
Confidence 99999987766655667789999999999999999999999998888888766441110 00111111111222334455
Q ss_pred HHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEe-e-------
Q 010991 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS-K------- 322 (496)
Q Consensus 256 l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s-~------- 322 (496)
+..++.......+.++||||. +.+++.+++.|. +..+||+++..+|.++++.|+++ ++++||+| +
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g-~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG-KGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC-CSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEcChhhcccc
Confidence 555554433134667777777 889999999984 56799999999999999999998 89999999 6
Q ss_pred --------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCC----------------hHHHHHHH
Q 010991 323 --------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT----------------QEMFYSTK 378 (496)
Q Consensus 323 --------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t----------------~e~~~~~~ 378 (496)
+.+.++|+.++.|++||+||.|++ +..+++|++++..+ ........
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~----------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGS----------KTIATVWDLIDDAGVKPKSANTKKKYVHLNYLLKHGID 483 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCC----------CCCCEEEEEEEECCBCCSSSSCSCSCSBCCHHHHHHHH
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCC----------CceEEEEEeecchhhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 567778999999999999999963 33799999998654 11233456
Q ss_pred HHHHHHHcCccEEEE
Q 010991 379 RQQFLIDQGYSFKVI 393 (496)
Q Consensus 379 r~~~l~~~g~~~~vi 393 (496)
|.+.+.+.++.+.+.
T Consensus 484 r~~~~~~e~~~~~~~ 498 (510)
T 2oca_A 484 RIQRYADEKFNYVMK 498 (510)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHhcCceEEEe
Confidence 677777777777554
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-37 Score=325.66 Aligned_cols=328 Identities=22% Similarity=0.221 Sum_probs=227.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.++|||||.+++.+++.+ ++++++|||+|||++++.++... ..++|||||+++|+.||.++|.+|++.+...
T Consensus 7 ~~~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCccHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 468999999999987765 79999999999999998887654 6799999999999999999999998877778
Q ss_pred EEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HHHHHHHhc----
Q 010991 99 ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT---- 169 (496)
Q Consensus 99 v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~~l---- 169 (496)
+..++|+.... ....++|+|+||+++.....+ ..+...+|++||+||||++.+. .+..++..+
T Consensus 83 v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp EEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred eEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--------CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 89998876432 123578999999999754221 1122368999999999999864 444444333
Q ss_pred cCccEEEEeecCCCCccchhhhhhhhCcccccc-CHHHHHhCCCCCcceEEEEEcCCCHHHHHHH---------------
Q 010991 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEA-NWLDLVKGGFIANVQCAEVWCPMTKEFFSEY--------------- 233 (496)
Q Consensus 170 ~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~-~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~y--------------- 233 (496)
+..++++|||||.+.......+...++...... ...+.....++.+.....+...++......+
T Consensus 155 ~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (494)
T 1wp9_A 155 KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLA 234 (494)
T ss_dssp SSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999955444444444443221110 0000000122223333333334433321100
Q ss_pred ------------------------------------------------------------------Hhhh----------
Q 010991 234 ------------------------------------------------------------------LKKE---------- 237 (496)
Q Consensus 234 ------------------------------------------------------------------l~~~---------- 237 (496)
+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (494)
T 1wp9_A 235 ETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTK 314 (494)
T ss_dssp HHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred HhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccch
Confidence 0000
Q ss_pred -------cHHHHHH-------hh-hhCCCcHHHHHHHHHHhh-hcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEc-
Q 010991 238 -------NSKKKQA-------LY-VMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYG- 295 (496)
Q Consensus 238 -------~~~~~~~-------l~-~~~~~K~~~l~~ll~~~~-~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G- 295 (496)
....... .. .....|+..+..++..+. ...+.++||||+++..++.+++.|. +..+||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~ 394 (494)
T 1wp9_A 315 ASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecc
Confidence 0000000 00 023457777777775531 1358899999999999999999984 567999
Q ss_pred -------CCCHHHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccC
Q 010991 296 -------ATSHVERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAG 353 (496)
Q Consensus 296 -------~~~~~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~ 353 (496)
+++..+|.+++++|+++ ++++||+|. .++.+||+..+.||+||+||.|
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~-~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g--------- 464 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARG-EFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM--------- 464 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHT-SCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC---------
T ss_pred ccccccccCCHHHHHHHHHHHhcC-CceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC---------
Confidence 99999999999999998 899999988 4677899999999999999999
Q ss_pred CCCceeEEEEEEEcCCChHHHHHH
Q 010991 354 GKEEYNAFFYSLVSTDTQEMFYST 377 (496)
Q Consensus 354 ~~~~~~~~vy~lvs~~t~e~~~~~ 377 (496)
+ +.+|.|++++|.|+.+..
T Consensus 465 --~---g~~~~l~~~~t~ee~~~~ 483 (494)
T 1wp9_A 465 --P---GRVIILMAKGTRDEAYYW 483 (494)
T ss_dssp --C---SEEEEEEETTSHHHHHHH
T ss_pred --C---ceEEEEEecCCHHHHHHH
Confidence 3 578999999999997764
No 7
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.6e-35 Score=332.16 Aligned_cols=331 Identities=15% Similarity=0.116 Sum_probs=231.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
...++|+|||.+++.+++... ..+++|+++||+|||++++.++... .+++|||||+ +|+.||..+|.+|+++
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~-~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l- 225 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRH-APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNL- 225 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSS-SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCC-
T ss_pred CCCCCCcHHHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCC-
Confidence 356899999999999888753 3588999999999999998888653 3489999999 7999999999888754
Q ss_pred CCcEEEEcCCccc-------cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH-----HH
Q 010991 96 DDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-----FR 163 (496)
Q Consensus 96 ~~~v~~~~g~~~~-------~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~-----~~ 163 (496)
.+.+++++... ......+|+|+||+++.....+ ...+....|++||+||||++++.. ..
T Consensus 226 --~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~ 296 (968)
T 3dmq_A 226 --RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREY 296 (968)
T ss_dssp --CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-------THHHHTSCCCEEEECCSSCCCCBTTBCCHHH
T ss_pred --CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-------HHHhhhcCCCEEEehhhHhhcCCCCcchHHH
Confidence 46666655421 1123578999999999765332 234556799999999999998642 23
Q ss_pred HHHHhc--cCccEEEEeecCCCCccc-hhhhhhhhCccccccCH------------HH----------------------
Q 010991 164 KVISLT--KSHCKLGLTATLVREDER-ITDLNFLIGPKLYEANW------------LD---------------------- 206 (496)
Q Consensus 164 ~~l~~l--~~~~~L~LTATp~r~d~~-~~~l~~l~gp~~~~~~~------------~~---------------------- 206 (496)
+.+..+ ...++|+|||||.+++.. .-.+..++.|..+.... .+
T Consensus 297 ~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~ 376 (968)
T 3dmq_A 297 QAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEM 376 (968)
T ss_dssp HHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTT
T ss_pred HHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 355555 566899999999875433 11222233332221100 00
Q ss_pred ------------------------------HHh------------C---CCCCcceEEEEEcCCCHHHHHHHHhhhcH--
Q 010991 207 ------------------------------LVK------------G---GFIANVQCAEVWCPMTKEFFSEYLKKENS-- 239 (496)
Q Consensus 207 ------------------------------l~~------------~---g~l~~~~~~~v~~~~~~~~~~~yl~~~~~-- 239 (496)
+.. . +-++......+.+++++.....|......
T Consensus 377 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (968)
T 3dmq_A 377 IGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGA 456 (968)
T ss_dssp TCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTC
T ss_pred hcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhh
Confidence 000 0 00111223345556666554444210000
Q ss_pred ------H-HHHH--------------hhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------CCe
Q 010991 240 ------K-KKQA--------------LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPM 292 (496)
Q Consensus 240 ------~-~~~~--------------l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~ 292 (496)
. ...+ ..+....|...+..++.. .++.++||||+++.+++.++..|. +..
T Consensus 457 ~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 457 RKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp CSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred hhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 0 0000 012233477777777765 358899999999999999999884 457
Q ss_pred EEcCCCHHHHHHHHHHHhcCCC--ccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCC
Q 010991 293 IYGATSHVERTKILQAFKCSRD--LNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 355 (496)
Q Consensus 293 i~G~~~~~eR~~il~~F~~~~~--~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~ 355 (496)
+||++++.+|.++++.|+++ + +++||+|+ +++.++|+.+|.|++||++|.|+
T Consensus 534 lhG~~~~~~R~~~l~~F~~g-~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq---------- 602 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEE-DTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ---------- 602 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHST-TSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSS----------
T ss_pred EeCCCCHHHHHHHHHHHhCC-CCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCC----------
Confidence 99999999999999999998 5 99999888 56778999999999999999994
Q ss_pred CceeEEEEEEEcCCChHHHHHHH
Q 010991 356 EEYNAFFYSLVSTDTQEMFYSTK 378 (496)
Q Consensus 356 ~~~~~~vy~lvs~~t~e~~~~~~ 378 (496)
...+++|.++..+|.++.+.+.
T Consensus 603 -~~~v~v~~~~~~~t~ee~i~~~ 624 (968)
T 3dmq_A 603 -AHDIQIHVPYLEKTAQSVLVRW 624 (968)
T ss_dssp -CSCCEEEEEEETTSHHHHHHHH
T ss_pred -CceEEEEEecCCChHHHHHHHH
Confidence 4469999999999999977643
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.1e-35 Score=312.08 Aligned_cols=325 Identities=16% Similarity=0.179 Sum_probs=204.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc--------CCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~--------~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
.++|+|||.+++++++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+++..
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHhCCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4789999999999888664 89999999999999988877553 668999999999999999999998754
Q ss_pred CCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHH-hcCCccEEEEcCCcccCch-HHHHHHH
Q 010991 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~~l~ 167 (496)
.+..+..++|+.... +...++|+|+||++|.....+. .+ ....|++||+||||++.+. .|..++.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 150 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG--------AIPSLSVFTLMIFDECHNTSKNHPYNQIMF 150 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTS--------SSCCGGGCSEEEETTGGGCSTTCHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcC--------cccccccCCEEEEECccccCCcchHHHHHH
Confidence 466788888886432 1234789999999987543221 01 1256899999999999865 4554443
Q ss_pred hc----------cCccEEEEeecCCCCccc--------hhhhhhhhCcc-ccc--cCHHHHHhCCCCCcceEEEEEcC--
Q 010991 168 LT----------KSHCKLGLTATLVREDER--------ITDLNFLIGPK-LYE--ANWLDLVKGGFIANVQCAEVWCP-- 224 (496)
Q Consensus 168 ~l----------~~~~~L~LTATp~r~d~~--------~~~l~~l~gp~-~~~--~~~~~l~~~g~l~~~~~~~v~~~-- 224 (496)
.+ ...++|+|||||.+.+.. ...+...++.. +.. ....++ ..++..+....+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 151 RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAEL--EQVVYKPQKISRKVASR 228 (555)
T ss_dssp HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHH--HTTCCCCCEEEEECCCC
T ss_pred HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHH--HhhcCCCceEEEEecCc
Confidence 32 224799999999876532 12233344422 221 123333 234444444444443
Q ss_pred CCHHHHH-------------------------------------HHHhhhcH----------------------------
Q 010991 225 MTKEFFS-------------------------------------EYLKKENS---------------------------- 239 (496)
Q Consensus 225 ~~~~~~~-------------------------------------~yl~~~~~---------------------------- 239 (496)
..+.+.. .|+.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 2111110 01100000
Q ss_pred -----------------------------------HHHH----------------HhhhhCCCcHHHHHHHHHHh-hhcC
Q 010991 240 -----------------------------------KKKQ----------------ALYVMNPNKFRACEFLIRFH-EQQR 267 (496)
Q Consensus 240 -----------------------------------~~~~----------------~l~~~~~~K~~~l~~ll~~~-~~~~ 267 (496)
..+. ........|+..+..++... ....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 0000 00001245777777777543 2245
Q ss_pred CCeEEEEeccHHHHHHHHHHcC-----------------CCeEEcCCCHHHHHHHHHHHhc-CCCccEEEEee-------
Q 010991 268 GDKIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKC-SRDLNTIFLSK------- 322 (496)
Q Consensus 268 g~kiIVF~~~~~~~~~l~~~L~-----------------~~~i~G~~~~~eR~~il~~F~~-~~~~~vlv~s~------- 322 (496)
+.++||||+++.+++.+++.|. ...+||++++++|.+++++|++ | ++++||+|+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g-~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG-DNNILIATSVADEGID 467 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------------CCSEEEECCCTTCCEE
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCC-CeeEEEEcchhhcCCc
Confidence 6899999999999999999883 2346789999999999999999 6 899999998
Q ss_pred --------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 323 --------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 323 --------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
.++.++|+..|+||+|| ||.. .+.+|.|++.++.++...
T Consensus 468 lp~v~~VI~~d~p~s~~~~~Qr~GR-gR~~--------------~g~~~~l~~~~~~~~~~~ 514 (555)
T 3tbk_A 468 IAECNLVILYEYVGNVIKMIQTRGR-GRAR--------------DSKCFLLTSSADVIEKEK 514 (555)
T ss_dssp TTSCSEEEEESCCSSCCCEECSSCC-CTTT--------------SCEEEEEESCHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHhcCc-CcCC--------------CceEEEEEcCCCHHHHHH
Confidence 56788999999999999 7874 367888899988887543
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.2e-34 Score=310.79 Aligned_cols=326 Identities=15% Similarity=0.172 Sum_probs=189.0
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc--------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~--------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
..++|+|||.++++.++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+|+.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35789999999999988764 89999999999999988777654 66899999999999999999999875
Q ss_pred CCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHH-hcCCccEEEEcCCcccCch-HHHHHH
Q 010991 94 IQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVI 166 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~~l 166 (496)
..+..+..++|+.... +...++|+|+||+.|.....+. .+ ....|++||+||||++.+. .+..++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~ 152 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVLM 152 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSS--------SCCCSTTCSEEEEETGGGCSTTSHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhC--------cccccccCCEEEEECCcccCCcchHHHHH
Confidence 4456788888876422 1235789999999987543221 01 1257899999999999865 344433
Q ss_pred Hhc---------cCccEEEEeecCCCCccc--------hhhhhhhhCccccc---cCHHHHHhCCCCCcceEEEEEcC--
Q 010991 167 SLT---------KSHCKLGLTATLVREDER--------ITDLNFLIGPKLYE---ANWLDLVKGGFIANVQCAEVWCP-- 224 (496)
Q Consensus 167 ~~l---------~~~~~L~LTATp~r~d~~--------~~~l~~l~gp~~~~---~~~~~l~~~g~l~~~~~~~v~~~-- 224 (496)
..+ +..++|+|||||...+.. +..+...+++.... ....++. .++..+....+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 230 (556)
T 4a2p_A 153 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ--RFMNKPEIDVRLVKRR 230 (556)
T ss_dssp HHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH--HHTCCCCEEEEECCCC
T ss_pred HHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHH--hcCCCCceEEEEcCCC
Confidence 222 225799999999865532 11222333322111 1122222 22223332222222
Q ss_pred CCHHH------------------------------------HHHHHhhhc------------------------------
Q 010991 225 MTKEF------------------------------------FSEYLKKEN------------------------------ 238 (496)
Q Consensus 225 ~~~~~------------------------------------~~~yl~~~~------------------------------ 238 (496)
....+ |..++....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (556)
T 4a2p_A 231 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 310 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 11110 000110000
Q ss_pred ---------------------------------HHHHHHh------------hh----hCCCcHHHHHHHHHH-hhhcCC
Q 010991 239 ---------------------------------SKKKQAL------------YV----MNPNKFRACEFLIRF-HEQQRG 268 (496)
Q Consensus 239 ---------------------------------~~~~~~l------------~~----~~~~K~~~l~~ll~~-~~~~~g 268 (496)
...+.+. .+ ....|+..+..++.. .....+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~ 390 (556)
T 4a2p_A 311 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 390 (556)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCC
Confidence 0000000 00 024477777777743 222467
Q ss_pred CeEEEEeccHHHHHHHHHHcCC-----------------CeEEcCCCHHHHHHHHHHHhc-CCCccEEEEee--------
Q 010991 269 DKIIVFADNLFALTEYAMKLRK-----------------PMIYGATSHVERTKILQAFKC-SRDLNTIFLSK-------- 322 (496)
Q Consensus 269 ~kiIVF~~~~~~~~~l~~~L~~-----------------~~i~G~~~~~eR~~il~~F~~-~~~~~vlv~s~-------- 322 (496)
.++||||+++.+++.+++.|.. ..+||++++++|.+++++|++ | ++++||+|+
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g-~~~vLvaT~~~~~GiDi 469 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-DNRLLIATSVADEGIDI 469 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CCEEEEEC--------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccC-ceEEEEEcCchhcCCCc
Confidence 8999999999999999999842 246788999999999999999 7 899999998
Q ss_pred -------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 323 -------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 323 -------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
.++.++|+.+|+||+|| ||.+ .+.+|.|++.++.++.+.
T Consensus 470 p~v~~VI~~d~p~s~~~~~Qr~GR-gR~~--------------~g~~~~l~~~~~~~~~~~ 515 (556)
T 4a2p_A 470 VQCNLVVLYEYSGNVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENEK 515 (556)
T ss_dssp ---CEEEEETCCSCHHHHHHC-----------------------CCEEEEESCHHHHHHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCCC--------------CceEEEEEeCcchHHHHH
Confidence 56788999999999999 8885 356888899999887643
No 10
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.3e-34 Score=313.59 Aligned_cols=322 Identities=18% Similarity=0.245 Sum_probs=206.2
Q ss_pred CCCCCCcHHHHHHHHHHHhc--CCCcceEEEeCCCCChHHHHHHHHHhc------------CCcEEEEEeChHHHHHHH-
Q 010991 21 KPHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWA- 85 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~~~~~------------~~~~LIl~P~~~L~~Qw~- 85 (496)
.....|||||.+|+++++.. ...+++++++|||+|||++++.++..+ .+++|||||+++|+.||.
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----------
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH
Confidence 34578999999999988751 011478999999999999988877542 368999999999999999
Q ss_pred HHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc---hHH
Q 010991 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMF 162 (496)
Q Consensus 86 ~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~---~~~ 162 (496)
+.|..|.. .+..+.++.. ....+|+|+||+.|........ ....+....|++||+||||++.+ ..|
T Consensus 254 ~~~~~~~~----~~~~~~~~~~---~~~~~I~v~T~~~l~~~~~~~~----~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 254 KTFTPFGD----ARHKIEGGKV---VKSREIYFAIYQSIASDERRPG----LYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp -CCTTTCS----SEEECCC--C---CSSCSEEEEEGGGC------CC----GGGGSCTTSCSEEEESCCC---------C
T ss_pred HHHHhcch----hhhhhhccCC---CCCCcEEEEEhhhhcccccccc----ccccCCCCccCEEEEECCccccccchHHH
Confidence 88887632 3455544432 3467899999999875422110 01233346799999999999986 478
Q ss_pred HHHHHhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHH--------
Q 010991 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL-------- 234 (496)
Q Consensus 163 ~~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl-------- 234 (496)
+.++..++..++|+|||||.+.+.. .+..++|+.++.+...+++..+++.++.+..+........+....
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~--~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNR--DTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTH--HHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHhCCcceEEEeccccccccch--hHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 8899999888999999999987664 456778999999999999999999999888777654321111000
Q ss_pred --h----hhcHHHHHHhhhhCCCcH-HHHHHHHHHhhh-cCCCeEEEEeccHHHHHHHHHHcC-------------CCeE
Q 010991 235 --K----KENSKKKQALYVMNPNKF-RACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLR-------------KPMI 293 (496)
Q Consensus 235 --~----~~~~~~~~~l~~~~~~K~-~~l~~ll~~~~~-~~g~kiIVF~~~~~~~~~l~~~L~-------------~~~i 293 (496)
. ......+. +. .+.+. .+++.|...... .++.|+||||+++.+++.+++.|. +..+
T Consensus 401 ~~~~~~~~~~~~~~~-~~--~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 401 EIPDGEYQTKDFERV-IA--LKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp --------CCSHHHH-HH--HHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred ccccccCCHHHhhhH-hc--ChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 0 00000000 00 01111 122333322221 456899999999999999999983 3457
Q ss_pred EcCCCHHHHHHHHHHHhcCC-CccEEEEee----------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCC
Q 010991 294 YGATSHVERTKILQAFKCSR-DLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKE 356 (496)
Q Consensus 294 ~G~~~~~eR~~il~~F~~~~-~~~vlv~s~----------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~ 356 (496)
||+++. +|.+++++|+++. .+++|++|+ +....+|+..|.|++||++|.++.. +
T Consensus 478 ~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~--------~ 548 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDY--------G 548 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGG--------T
T ss_pred eCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccC--------C
Confidence 898864 7999999999962 255555544 4577789999999999999998511 1
Q ss_pred ceeEEEEEEEc
Q 010991 357 EYNAFFYSLVS 367 (496)
Q Consensus 357 ~~~~~vy~lvs 367 (496)
+..+++|+++.
T Consensus 549 k~~~~I~D~~g 559 (590)
T 3h1t_A 549 KLWFNIIDYTG 559 (590)
T ss_dssp BSCEEEEECSS
T ss_pred CCEEEEEecCC
Confidence 23688888874
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=8.6e-34 Score=317.25 Aligned_cols=325 Identities=15% Similarity=0.165 Sum_probs=193.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc--------CCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~--------~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
..+|||||.++++.++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+|+..
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp --CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHhCC---CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 6689999999999888764 89999999999999988887654 678999999999999999999999754
Q ss_pred CCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHH-hcCCccEEEEcCCcccCch-HHHHHHH
Q 010991 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~~l~ 167 (496)
.+..+..++|+.... +...++|+|+||++|.....+. .+ ....|++||+||||++.+. .|..++.
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS--------SCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc--------cccccccCCEEEEECccccCCCccHHHHHH
Confidence 466788888886432 2246789999999987543221 01 1246799999999999965 4554443
Q ss_pred hcc---------CccEEEEeecCCCCccc--------hhhhhhhhCcccccc---CHHHHHhCCCCCcceEEEEEcC--C
Q 010991 168 LTK---------SHCKLGLTATLVREDER--------ITDLNFLIGPKLYEA---NWLDLVKGGFIANVQCAEVWCP--M 225 (496)
Q Consensus 168 ~l~---------~~~~L~LTATp~r~d~~--------~~~l~~l~gp~~~~~---~~~~l~~~g~l~~~~~~~v~~~--~ 225 (496)
.+. ..++|+|||||.+.+.. +..+...+++..+.. ...++. .++..+....+.+. .
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~--~~~~~~~~~~~~~~~~~ 472 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ--RFMNKPEIDVRLVKRRI 472 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH--HHSCCCCCEEEECCCCS
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHH--HhcCCCceEEEecCCCC
Confidence 322 24699999999865532 223333444322211 112221 23333332333322 1
Q ss_pred CHH------------------------------------HHHHHHhhhcH------------------------------
Q 010991 226 TKE------------------------------------FFSEYLKKENS------------------------------ 239 (496)
Q Consensus 226 ~~~------------------------------------~~~~yl~~~~~------------------------------ 239 (496)
... .|..|+.....
T Consensus 473 ~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 552 (797)
T 4a2q_A 473 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 111 01111100000
Q ss_pred ---------------------------------HHHHH-----------h-hh----hCCCcHHHHHHHHHH-hhhcCCC
Q 010991 240 ---------------------------------KKKQA-----------L-YV----MNPNKFRACEFLIRF-HEQQRGD 269 (496)
Q Consensus 240 ---------------------------------~~~~~-----------l-~~----~~~~K~~~l~~ll~~-~~~~~g~ 269 (496)
..+.+ . .. ....|+..+..++.. .....+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (797)
T 4a2q_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (797)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCC
Confidence 00000 0 00 024577777777753 2225678
Q ss_pred eEEEEeccHHHHHHHHHHcC-----------------CCeEEcCCCHHHHHHHHHHHhc-CCCccEEEEee---------
Q 010991 270 KIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKC-SRDLNTIFLSK--------- 322 (496)
Q Consensus 270 kiIVF~~~~~~~~~l~~~L~-----------------~~~i~G~~~~~eR~~il~~F~~-~~~~~vlv~s~--------- 322 (496)
++||||+++.+++.+++.|. ...+||++++.+|.+++++|++ | .+++||+|+
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g-~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-DNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-----------------------------CCSEEEEECC-------C
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccC-CceEEEEcCchhcCCCch
Confidence 99999999999999999982 3457899999999999999999 6 899999998
Q ss_pred ------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 323 ------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 323 ------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
.++.++|+.+|+||+|| ||.. .+.+|.|++.++.++.+.
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR~~--------------~g~~i~l~~~~~~ee~~~ 756 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENEK 756 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC----------------------CCCEEEEECCHHHHHHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCCC--------------CceEEEEEeCCcHHHHHH
Confidence 46788999999999999 8985 355788899999888644
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.5e-33 Score=285.88 Aligned_cols=286 Identities=16% Similarity=0.123 Sum_probs=203.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.|+|||.++++.++.+. ++++++|||+|||++++.++... +.++||+||+++|+.||.+++.+++...+..
T Consensus 43 ~~~~~Q~~~i~~i~~~~---~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 119 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGR---DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS 119 (400)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 59999999999988774 89999999999999977766542 3479999999999999999999987555567
Q ss_pred EEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc----
Q 010991 99 ICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT---- 169 (496)
Q Consensus 99 v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l---- 169 (496)
+..+.|+.... ....++|+|+||+.+.....+. .....++++||+||||++.+..|...+..+
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~--------~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~ 191 (400)
T 1s2m_A 120 CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK--------VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL 191 (400)
T ss_dssp EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--------CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS
T ss_pred EEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC--------CcccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 77777775421 3456889999999886442211 111257899999999999988776666554
Q ss_pred c-CccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhh
Q 010991 170 K-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (496)
Q Consensus 170 ~-~~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~ 247 (496)
+ ..+.++||||+..... ..+...++ |...... ..-...........++
T Consensus 192 ~~~~~~i~lSAT~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------------------- 241 (400)
T 1s2m_A 192 PPTHQSLLFSATFPLTVK--EFMVKHLHKPYEINLM-----EELTLKGITQYYAFVE----------------------- 241 (400)
T ss_dssp CSSCEEEEEESCCCHHHH--HHHHHHCSSCEEESCC-----SSCBCTTEEEEEEECC-----------------------
T ss_pred CcCceEEEEEecCCHHHH--HHHHHHcCCCeEEEec-----cccccCCceeEEEEec-----------------------
Confidence 2 3478999999863211 11211221 2111100 0000111111111111
Q ss_pred hCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 248 ~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
...|...+..++... .+.++||||+++..++.+++.|. +..+||+++..+|..+++.|+++ ++++||+|.
T Consensus 242 -~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~ 316 (400)
T 1s2m_A 242 -ERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-KVRTLVCSD 316 (400)
T ss_dssp -GGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEEESS
T ss_pred -hhhHHHHHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcC
Confidence 112344555666543 46799999999999999999983 56799999999999999999998 899999998
Q ss_pred ---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCC
Q 010991 323 ---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 369 (496)
Q Consensus 323 ---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~ 369 (496)
.++.++|+..|.||+||+||.|+ ...++.+++.+
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~-------------~g~~~~l~~~~ 365 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGH-------------LGLAINLINWN 365 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTC-------------CEEEEEEECGG
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCC-------------CceEEEEeccc
Confidence 35677899999999999999984 24566667654
No 13
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.9e-33 Score=285.05 Aligned_cols=277 Identities=15% Similarity=0.102 Sum_probs=195.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCC-CCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI-QDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~~ 97 (496)
.|+|||.++++.++.+. ++++++|||+|||++++.++... ..++||+||+++|+.||.+++.+|... +..
T Consensus 30 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 106 (391)
T 1xti_A 30 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 106 (391)
T ss_dssp SCCHHHHHHHHHHTTTC---CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTC
T ss_pred CCCHHHHHHHHHHhcCC---cEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCe
Confidence 59999999999888764 89999999999999987776543 348999999999999999999998654 356
Q ss_pred cEEEEcCCcccc-----c-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-hHHHH----HH
Q 010991 98 QICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRK----VI 166 (496)
Q Consensus 98 ~v~~~~g~~~~~-----~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~----~l 166 (496)
.+..+.|+.... + .+.++|+|+||+++.....+. .+....+++||+||||++.+ ..+.. ++
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--------~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~ 178 (391)
T 1xti_A 107 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178 (391)
T ss_dssp CEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--------SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CccccccCEEEEeCHHHHhhccchHHHHHHHH
Confidence 788888875421 1 244789999999987542221 11236889999999999986 34433 33
Q ss_pred Hhcc-CccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHH
Q 010991 167 SLTK-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (496)
Q Consensus 167 ~~l~-~~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~ 244 (496)
...+ ..+++++||||...... .+..+++ |......... .-.........+.++
T Consensus 179 ~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------------------- 233 (391)
T 1xti_A 179 RMTPHEKQVMMFSATLSKEIRP--VCRKFMQDPMEIFVDDET---KLTLHGLQQYYVKLK-------------------- 233 (391)
T ss_dssp HTSCSSSEEEEEESSCCSTHHH--HHHHHCSSCEEEECCCCC---CCCCTTCEEEEEECC--------------------
T ss_pred hhCCCCceEEEEEeeCCHHHHH--HHHHHcCCCeEEEecCcc---ccCcccceEEEEEcC--------------------
Confidence 3333 35789999999754221 1222222 2211111000 000111111111111
Q ss_pred hhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEE
Q 010991 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (496)
Q Consensus 245 l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv 319 (496)
...|...+..++... .+.++||||+++..++.+++.|. +..+||+++..+|.++++.|+++ +.++||
T Consensus 234 ----~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv 305 (391)
T 1xti_A 234 ----DNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILV 305 (391)
T ss_dssp ----GGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-CCSEEE
T ss_pred ----chhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CCcEEE
Confidence 112334445555443 47899999999999999999983 56799999999999999999998 899999
Q ss_pred Eee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 320 LSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 320 ~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+|. .++.++|+..|.||+||+||.|+
T Consensus 306 ~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 346 (391)
T 1xti_A 306 ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 346 (391)
T ss_dssp ESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCC
T ss_pred ECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCC
Confidence 998 35677899999999999999984
No 14
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-33 Score=294.27 Aligned_cols=303 Identities=16% Similarity=0.127 Sum_probs=205.8
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c----------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~----------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
.|+|+|.++++.++.+. +.++++|||+|||++++.++.. + +.++|||+|+++|+.||.+++.+++.
T Consensus 78 ~pt~iQ~~ai~~i~~g~---d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 154 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGR---DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF 154 (434)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhc
Confidence 59999999999888664 8999999999999987665532 1 34799999999999999999999876
Q ss_pred CCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HH
Q 010991 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RK 164 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~ 164 (496)
.....+..+.|+... .+...++|+|+||+.|.....+. .+...++++||+||||++.+..| ++
T Consensus 155 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------~~~l~~~~~lVlDEah~~~~~gf~~~~~~ 226 (434)
T 2db3_A 155 ESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--------FITFEDTRFVVLDEADRMLDMGFSEDMRR 226 (434)
T ss_dssp TSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--------SCCCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred cCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--------CcccccCCeEEEccHhhhhccCcHHHHHH
Confidence 555667777776442 13456899999999986543221 11236789999999999987654 44
Q ss_pred HHHhc---cCccEEEEeecCCCCccchhhhhhhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 165 VISLT---KSHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 165 ~l~~l---~~~~~L~LTATp~r~d~~~~~l~~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
++..+ ...+.+++|||+...... ....++ .+........ .+.........+.++
T Consensus 227 i~~~~~~~~~~q~l~~SAT~~~~~~~--~~~~~l~~~~~i~~~~~----~~~~~~i~~~~~~~~---------------- 284 (434)
T 2db3_A 227 IMTHVTMRPEHQTLMFSATFPEEIQR--MAGEFLKNYVFVAIGIV----GGACSDVKQTIYEVN---------------- 284 (434)
T ss_dssp HHHCTTSCSSCEEEEEESCCCHHHHH--HHHTTCSSCEEEEESST----TCCCTTEEEEEEECC----------------
T ss_pred HHHhcCCCCCceEEEEeccCCHHHHH--HHHHhccCCEEEEeccc----cccccccceEEEEeC----------------
Confidence 44443 235789999998632211 111111 1111111100 111111111112221
Q ss_pred HHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCc
Q 010991 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDL 315 (496)
Q Consensus 241 ~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~ 315 (496)
...|...+..++... +.++||||+++..++.+++.|. +..+||++++.+|.++++.|++| ++
T Consensus 285 --------~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~ 351 (434)
T 2db3_A 285 --------KYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-SM 351 (434)
T ss_dssp --------GGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-SC
T ss_pred --------cHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-CC
Confidence 112333344444332 3459999999999999999983 56799999999999999999998 99
Q ss_pred cEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHH
Q 010991 316 NTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQ 380 (496)
Q Consensus 316 ~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~ 380 (496)
++||+|+ .++.+++...|+||+||+||.|+ ...++.+++.+. +..+...-.
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~-------------~G~a~~~~~~~~-~~~~~~~l~ 417 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGN-------------NGRATSFFDPEK-DRAIAADLV 417 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTC-------------CEEEEEEECTTT-CGGGHHHHH
T ss_pred cEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCC-------------CCEEEEEEeccc-cHHHHHHHH
Confidence 9999998 35667899999999999999985 345666666432 223344445
Q ss_pred HHHHHcC
Q 010991 381 QFLIDQG 387 (496)
Q Consensus 381 ~~l~~~g 387 (496)
+.|.+.+
T Consensus 418 ~~l~~~~ 424 (434)
T 2db3_A 418 KILEGSG 424 (434)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 5665543
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.8e-33 Score=287.43 Aligned_cols=277 Identities=17% Similarity=0.132 Sum_probs=196.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.|+|||.++++.++.+. ++++++|||+|||++++.++... ..++|||||+++|+.||.+++.++.......
T Consensus 59 ~~~~~Q~~ai~~i~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 135 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGR---DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 135 (410)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeE
Confidence 49999999999888764 89999999999999987776642 3589999999999999999999987655667
Q ss_pred EEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH----Hhc
Q 010991 99 ICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI----SLT 169 (496)
Q Consensus 99 v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l----~~l 169 (496)
+..+.|+.... +....+|+|+||+.+.....+. .+....+++||+||||++.+..|...+ ..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~--------~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 207 (410)
T 2j0s_A 136 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 207 (410)
T ss_dssp EEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--------SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS
T ss_pred EEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--------CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhC
Confidence 77777764321 2345789999999886442221 122357899999999999876554433 333
Q ss_pred c-CccEEEEeecCCCCccchhhhhhhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhh
Q 010991 170 K-SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (496)
Q Consensus 170 ~-~~~~L~LTATp~r~d~~~~~l~~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~ 247 (496)
+ ..+++++||||...... .+..++ .|.......... .........+.++..
T Consensus 208 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--------------------- 260 (410)
T 2j0s_A 208 PPATQVVLISATLPHEILE--MTNKFMTDPIRILVKRDEL----TLEGIKQFFVAVERE--------------------- 260 (410)
T ss_dssp CTTCEEEEEESCCCHHHHT--TGGGTCSSCEEECCCGGGC----SCTTEEEEEEEESST---------------------
T ss_pred ccCceEEEEEcCCCHHHHH--HHHHHcCCCEEEEecCccc----cCCCceEEEEEeCcH---------------------
Confidence 2 35789999999642111 111111 222111111100 111111111112111
Q ss_pred hCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 248 ~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
..|...+..++.... +.++||||+++..++.+++.|. +..+||++++.+|.++++.|++| ++++||+|.
T Consensus 261 --~~k~~~l~~~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 334 (410)
T 2j0s_A 261 --EWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVLISTD 334 (410)
T ss_dssp --THHHHHHHHHHHHHT---SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEEEECG
T ss_pred --HhHHHHHHHHHHhcC---CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC-CCCEEEECC
Confidence 113345555665443 5699999999999999999983 77899999999999999999998 899999988
Q ss_pred ---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 ---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 ---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++|+..|.||+||+||.|+
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 372 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 372 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGC
T ss_pred hhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCC
Confidence 35677899999999999999984
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.4e-33 Score=280.71 Aligned_cols=274 Identities=19% Similarity=0.156 Sum_probs=195.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.+|+|+|.++++.++.++ +++++++|||+|||++++.++... +.++||+||+++|+.||.+++.++++.....
T Consensus 27 ~~~~~~Q~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 104 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 (367)
T ss_dssp CSCCHHHHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCHHHHHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce
Confidence 379999999999998874 489999999999999987766543 4589999999999999999999998766667
Q ss_pred EEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH----HHHHhc-
Q 010991 99 ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISLT- 169 (496)
Q Consensus 99 v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~~l- 169 (496)
+..+.|+.... .....+|+|+||+.+.....+. .+...++++||+||||++.+..|. .++..+
T Consensus 105 v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--------~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 176 (367)
T 1hv8_A 105 IAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--------TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176 (367)
T ss_dssp EEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--------CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC
T ss_pred EEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC--------CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC
Confidence 87777765421 1125789999999986542211 111267899999999999876543 333333
Q ss_pred cCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhC
Q 010991 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (496)
Q Consensus 170 ~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~ 249 (496)
+..+++++||||.+.... .+..+++...+.. .....+.....+.+. .
T Consensus 177 ~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------------------------~ 223 (367)
T 1hv8_A 177 KDKRILLFSATMPREILN--LAKKYMGDYSFIK-------AKINANIEQSYVEVN------------------------E 223 (367)
T ss_dssp SSCEEEEECSSCCHHHHH--HHHHHCCSEEEEE-------CCSSSSSEEEEEECC------------------------G
T ss_pred CCceEEEEeeccCHHHHH--HHHHHcCCCeEEE-------ecCCCCceEEEEEeC------------------------h
Confidence 345789999999743211 2222232211110 001111111111111 1
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-- 322 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-- 322 (496)
..|+..+..++ . ..+.++||||+++..++.+++.|. +..+||+++..+|.++++.|+++ +.++||+|.
T Consensus 224 ~~~~~~l~~~l---~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~ 298 (367)
T 1hv8_A 224 NERFEALCRLL---K-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILIATDVM 298 (367)
T ss_dssp GGHHHHHHHHH---C-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEEECTTH
T ss_pred HHHHHHHHHHH---h-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC-CCeEEEECChh
Confidence 12333333333 2 457899999999999999999983 67799999999999999999998 899999998
Q ss_pred -------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 -------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 -------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
..+.++|+..|.||+||++|.|+
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~ 334 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGK 334 (367)
T ss_dssp HHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSS
T ss_pred hcCCCcccCCEEEEecCCCCHHHhhhcccccccCCC
Confidence 35677899999999999999984
No 17
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-33 Score=280.26 Aligned_cols=271 Identities=16% Similarity=0.141 Sum_probs=194.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
.|+|||.++++.++.++ ++++++|||+|||++++.++...+.++||+||+++|+.||.+++.+|....+..+..+.|
T Consensus 16 ~l~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGK---NVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG 92 (337)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC
Confidence 69999999999888764 899999999999999988888888999999999999999999999987655667877777
Q ss_pred Ccccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HHHHHhccCc-cEE
Q 010991 105 DSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISLTKSH-CKL 175 (496)
Q Consensus 105 ~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~l~~l~~~-~~L 175 (496)
+.... ....++|+|+||+.+.....+. .+...+|++||+||||++.+..| ..++..++.. ..+
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (337)
T 2z0m_A 93 GMPYKAQINRVRNADIVVATPGRLLDLWSKG--------VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITG 164 (337)
T ss_dssp TSCHHHHHHHHTTCSEEEECHHHHHHHHHTT--------SCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEE
T ss_pred CcchHHHHhhcCCCCEEEECHHHHHHHHHcC--------CcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEE
Confidence 64421 1134789999999986542211 11125789999999999986543 3344444443 556
Q ss_pred EEeecCCCCccchhhhhhhhCc-cccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHH
Q 010991 176 GLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (496)
Q Consensus 176 ~LTATp~r~d~~~~~l~~l~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~ 254 (496)
++||||...... .+..+++. ....... ...+.....+.++.. ...
T Consensus 165 ~~SAT~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------------------------~~~ 210 (337)
T 2z0m_A 165 LFSATIPEEIRK--VVKDFITNYEEIEACI-------GLANVEHKFVHVKDD-------------------------WRS 210 (337)
T ss_dssp EEESCCCHHHHH--HHHHHSCSCEEEECSG-------GGGGEEEEEEECSSS-------------------------SHH
T ss_pred EEeCcCCHHHHH--HHHHhcCCceeeeccc-------ccCCceEEEEEeChH-------------------------HHH
Confidence 789999643221 22222221 1111100 011111111222111 001
Q ss_pred HHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-----------
Q 010991 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------- 322 (496)
Q Consensus 255 ~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------- 322 (496)
.+ ..+. ...+.++||||+++.+++.+++.|. +..+||+++..+|.++++.|+++ ++++||+|.
T Consensus 211 ~~-~~~~---~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gid~~~~ 285 (337)
T 2z0m_A 211 KV-QALR---ENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREG-EYDMLITTDVASRGLDIPLV 285 (337)
T ss_dssp HH-HHHH---TCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECHHHHTTCCCCCB
T ss_pred HH-HHHH---hCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcC-CCcEEEEcCccccCCCccCC
Confidence 11 1121 1457899999999999999999996 67799999999999999999998 899999998
Q ss_pred ----ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 ----ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 ----i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++|+..|.||+||+||.|+
T Consensus 286 ~~Vi~~~~~~s~~~~~Q~~GR~gR~g~ 312 (337)
T 2z0m_A 286 EKVINFDAPQDLRTYIHRIGRTGRMGR 312 (337)
T ss_dssp SEEEESSCCSSHHHHHHHHTTBCGGGC
T ss_pred CEEEEecCCCCHHHhhHhcCccccCCC
Confidence 45677899999999999999984
No 18
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-32 Score=311.38 Aligned_cols=329 Identities=15% Similarity=0.153 Sum_probs=192.8
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc--------CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~--------~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
+....+|||||.+++++++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+|
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~---~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCC---CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4447789999999999888764 89999999999999998888765 668999999999999999999999
Q ss_pred hCCCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HHHHH
Q 010991 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKV 165 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~ 165 (496)
+...+..+..++|+.... +...++|+|+||++|.....+.. ......|++||+||||++.+. .+..+
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~-------~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-------LTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS-------CCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc-------cccccCCCEEEEECccccCCCccHHHH
Confidence 754466788888886432 12357899999999975432210 001246899999999999865 45554
Q ss_pred HHhcc---------CccEEEEeecCCCCccc--------hhhhhhhhCcccccc---CHHHHHhCCCCCcceEEEEEcC-
Q 010991 166 ISLTK---------SHCKLGLTATLVREDER--------ITDLNFLIGPKLYEA---NWLDLVKGGFIANVQCAEVWCP- 224 (496)
Q Consensus 166 l~~l~---------~~~~L~LTATp~r~d~~--------~~~l~~l~gp~~~~~---~~~~l~~~g~l~~~~~~~v~~~- 224 (496)
+..+. ..++|+|||||...+.. +..+...+++..... ...++. .++..+....+.+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~--~~~~~p~~~~~~~~~ 470 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ--RFMNKPEIDVRLVKR 470 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH--HHSCCCCEEEEECCC
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHH--HhccCCcceEEeccc
Confidence 43332 25799999999865532 122333334321111 122222 12333332323222
Q ss_pred -CCHH------------------------------------HHHHHHhhhc-----------------------------
Q 010991 225 -MTKE------------------------------------FFSEYLKKEN----------------------------- 238 (496)
Q Consensus 225 -~~~~------------------------------------~~~~yl~~~~----------------------------- 238 (496)
..+. .|..++....
T Consensus 471 ~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~ 550 (936)
T 4a2w_A 471 RIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 550 (936)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 1110 0111110000
Q ss_pred ----------------------------------HHHHHHh------------hh----hCCCcHHHHHHHHHHh-hhcC
Q 010991 239 ----------------------------------SKKKQAL------------YV----MNPNKFRACEFLIRFH-EQQR 267 (496)
Q Consensus 239 ----------------------------------~~~~~~l------------~~----~~~~K~~~l~~ll~~~-~~~~ 267 (496)
...+.++ .+ ....|+..+..++..+ ....
T Consensus 551 ~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~ 630 (936)
T 4a2w_A 551 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 630 (936)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCT
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCC
Confidence 0000000 00 0244777777777543 2245
Q ss_pred CCeEEEEeccHHHHHHHHHHcC-----------------CCeEEcCCCHHHHHHHHHHHhc-CCCccEEEEee-------
Q 010991 268 GDKIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKC-SRDLNTIFLSK------- 322 (496)
Q Consensus 268 g~kiIVF~~~~~~~~~l~~~L~-----------------~~~i~G~~~~~eR~~il~~F~~-~~~~~vlv~s~------- 322 (496)
+.++||||+++.+++.+++.|. ...+||++++.+|.+++++|++ | .+++||+|+
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g-~~~VLVaT~~~~eGID 709 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-DNRLLIATSVADEGID 709 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CCSEEEEECC------
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC-CeeEEEEeCchhcCCc
Confidence 7899999999999999999984 2346899999999999999999 7 899999998
Q ss_pred --------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 323 --------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 323 --------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
.++.++|+.+|+||+|| ||.+ .+.+|.|++.+|.++.+.
T Consensus 710 lp~v~~VI~yD~p~s~~~~iQr~GR-GR~~--------------~g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 710 IVQCNLVVLYEYSGNVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENEK 756 (936)
T ss_dssp CCCCSEEEEESCCSCSHHHHCC----------------------CCCEEEEESCHHHHHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCCC--------------CCEEEEEEeCCCHHHHHH
Confidence 56788999999999999 8885 245778899999987544
No 19
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.1e-32 Score=278.95 Aligned_cols=280 Identities=16% Similarity=0.145 Sum_probs=192.5
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
..|+|||.++++.++.+. .+++++++|||+|||++++.++... +.++||+||+++|+.||.+++.++......
T Consensus 26 ~~~~~~Q~~~i~~~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNP-PRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp CSCCHHHHHHHHHHHCSS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHHcCC-CCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 479999999999988762 2489999999999999987666542 458999999999999999999998766666
Q ss_pred cEEEEcCCcccc-ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-hHH----HHHHHhccC
Q 010991 98 QICRFTSDSKER-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMF----RKVISLTKS 171 (496)
Q Consensus 98 ~v~~~~g~~~~~-~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~----~~~l~~l~~ 171 (496)
.+....++.... ....++|+|+|++.+.....+. .+...++++||+||||++.+ ..+ ..+...++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--------~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 105 TSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK--------LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTT--------CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcC--------CcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 677766664332 2346789999999986442211 11125789999999999876 333 333444433
Q ss_pred -ccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhC
Q 010991 172 -HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (496)
Q Consensus 172 -~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~ 249 (496)
.+++++||||...... ....+++ +.......... ...........+. ...
T Consensus 177 ~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~--------------------- 228 (395)
T 3pey_A 177 DTQLVLFSATFADAVRQ--YAKKIVPNANTLELQTNEV----NVDAIKQLYMDCK-NEA--------------------- 228 (395)
T ss_dssp TCEEEEEESCCCHHHHH--HHHHHSCSCEEECCCGGGC----SCTTEEEEEEECS-SHH---------------------
T ss_pred CcEEEEEEecCCHHHHH--HHHHhCCCCeEEEcccccc----ccccccEEEEEcC-chH---------------------
Confidence 4789999999632111 1111111 11111111100 0111111111111 111
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-- 322 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-- 322 (496)
.|...+..++.. ..+.++||||+++.+++.+++.|. +..+||+++..+|.++++.|++| ++++||+|.
T Consensus 229 -~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~ 303 (395)
T 3pey_A 229 -DKFDVLTELYGL---MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG-RSKVLITTNVL 303 (395)
T ss_dssp -HHHHHHHHHHTT---TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCCEEEECGGG
T ss_pred -HHHHHHHHHHHh---ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC-CCCEEEECChh
Confidence 112334444433 346899999999999999999983 77899999999999999999998 899999998
Q ss_pred -------------ccCCCC------ChhHHHHHccCcCcCCC
Q 010991 323 -------------ISSHAG------SRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 -------------i~~~~~------s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++ |+..|.||+||+||.|+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 345 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR 345 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTC
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCC
Confidence 234444 88999999999999884
No 20
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=282.07 Aligned_cols=303 Identities=15% Similarity=0.124 Sum_probs=205.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----------------------CCcEEEEEeChH
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------------------KKSCLCLATNAV 79 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----------------------~~~~LIl~P~~~ 79 (496)
..|+|+|.++++.++.+. ++++++|||+|||++++.++.. + ..++|||+|+++
T Consensus 36 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKR---DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHccCC---CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 479999999999887664 8999999999999986655432 1 146999999999
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCC
Q 010991 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (496)
Q Consensus 80 L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEa 154 (496)
|+.||.+++.+++......+..+.|+... .+...++|+|+||+.|.....+. .+....+++||+|||
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--------~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG--------KIGLDFCKYLVLDEA 184 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--------SBCCTTCCEEEESSH
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC--------CcChhhCcEEEEECh
Confidence 99999999999876666678888777542 13456889999999986542221 112257899999999
Q ss_pred cccCchHHHHHHHhcc---------CccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcC
Q 010991 155 HVVPAHMFRKVISLTK---------SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCP 224 (496)
Q Consensus 155 H~~~~~~~~~~l~~l~---------~~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~ 224 (496)
|++.+..|...+..+. ..+++++|||+.+.... .+..+++ |......... ..........++++
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~ 258 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQM--LARDFLDEYIFLAVGRVG----STSENITQKVVWVE 258 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHH--HHHHHCSSCEEEEEC--------CCSSEEEEEEECC
T ss_pred hHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHH--HHHHHcCCCEEEEeCCCC----CCccCceEEEEEec
Confidence 9988665444443321 24689999999643221 1112222 2111111100 01111112222222
Q ss_pred CCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCH
Q 010991 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSH 299 (496)
Q Consensus 225 ~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~ 299 (496)
...|...+..++... ..+.++||||+++..++.+++.|. +..+||++++
T Consensus 259 ------------------------~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 312 (417)
T 2i4i_A 259 ------------------------ESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 312 (417)
T ss_dssp ------------------------GGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred ------------------------cHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCH
Confidence 112334455566544 357899999999999999999983 6779999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEE
Q 010991 300 VERTKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 364 (496)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~ 364 (496)
++|.++++.|+++ ++++||+|+ .++.++|+..|+||+||+||.|+ .+.+|.
T Consensus 313 ~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~-------------~g~~~~ 378 (417)
T 2i4i_A 313 RDREEALHQFRSG-KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN-------------LGLATS 378 (417)
T ss_dssp HHHHHHHHHHHHT-SSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--C-------------CEEEEE
T ss_pred HHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCC-------------CceEEE
Confidence 9999999999998 899999998 35677899999999999999984 245666
Q ss_pred EEcCCChHHHHHHHHHHHHHH
Q 010991 365 LVSTDTQEMFYSTKRQQFLID 385 (496)
Q Consensus 365 lvs~~t~e~~~~~~r~~~l~~ 385 (496)
+++.. +..+..+-..++..
T Consensus 379 ~~~~~--~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 379 FFNER--NINITKDLLDLLVE 397 (417)
T ss_dssp EECGG--GGGGHHHHHHHHHH
T ss_pred EEccc--cHHHHHHHHHHHHH
Confidence 66542 33333344445544
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=286.47 Aligned_cols=278 Identities=13% Similarity=0.073 Sum_probs=183.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh------cCCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~------~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
..|+|||.+++..++.+. ++++++|||+|||++++.++.. ...++||++|+++|+.||.+++.+++...+.
T Consensus 61 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCCHHHHHHhHHHhCCC---CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 479999999999888765 8999999999999997666654 2457999999999999999999998766666
Q ss_pred cEEEEcCCcccc------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HHHHH
Q 010991 98 QICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVIS 167 (496)
Q Consensus 98 ~v~~~~g~~~~~------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~l~ 167 (496)
.+....|+.... ....++|+|+|++.|.....+ ..+....+++||+||||++.+..| ..++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp CEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--------TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHT
T ss_pred eEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCcccccCcEEEEECHHHhhccCcHHHHHHHHH
Confidence 677766654321 125689999999988644211 112235689999999999876543 33444
Q ss_pred hcc-CccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHh
Q 010991 168 LTK-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (496)
Q Consensus 168 ~l~-~~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l 245 (496)
.+. ..++++|||||...... .+..+++ |......... ..........+.+..
T Consensus 210 ~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------------------- 263 (414)
T 3eiq_A 210 KLNSNTQVVLLSATMPSDVLE--VTKKFMRDPIRILVKKEE----LTLEGIRQFYINVER-------------------- 263 (414)
T ss_dssp TSCTTCEEEEECSCCCHHHHH--HHTTTCSSCEEECCCCCC----CCTTSCCEEEEECSS--------------------
T ss_pred hCCCCCeEEEEEEecCHHHHH--HHHHHcCCCEEEEecCCc----cCCCCceEEEEEeCh--------------------
Confidence 443 34789999999532111 1111111 1111110000 000111111111111
Q ss_pred hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 246 ~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
...|...+..++... .+.++||||+++..++.+++.|. +..+||++++.+|..+++.|++| ++++||+
T Consensus 264 ---~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~ 336 (414)
T 3eiq_A 264 ---EEWKLDTLCDLYETL---TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG-SSRVLIT 336 (414)
T ss_dssp ---STTHHHHHHHHHHSS---CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC----CEEE
T ss_pred ---HHhHHHHHHHHHHhC---CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC-CCcEEEE
Confidence 112445555555443 46799999999999999999983 67899999999999999999998 8999999
Q ss_pred ee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 321 SK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 321 s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
|. .++.++|+..|.||+||+||.|+
T Consensus 337 T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 376 (414)
T 3eiq_A 337 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGR 376 (414)
T ss_dssp CSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-----
T ss_pred CCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCC
Confidence 88 35667899999999999999884
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.98 E-value=1.9e-33 Score=288.26 Aligned_cols=276 Identities=17% Similarity=0.148 Sum_probs=114.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
..|+|||.++++.++.++ ++++++|||+|||++++.++.. + ..++||+||+++|+.||.+++.+++...+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 389999999999988875 8999999999999997665543 2 358999999999999999999998765566
Q ss_pred cEEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH----HHHHHHhc
Q 010991 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLT 169 (496)
Q Consensus 98 ~v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~l 169 (496)
.+..+.|+.... ....++|+|+||+.+.....+. .+...++++||+||||++.+.. +..++..+
T Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~ 190 (394)
T 1fuu_A 119 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--------RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 190 (394)
T ss_dssp CEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTT--------SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred eEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhC--------CcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhC
Confidence 788887775421 0124789999999986442211 1123578999999999987553 33444444
Q ss_pred c-CccEEEEeecCCCCccchhhhhhhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHH-HHHHHHhhhcHHHHHHhh
Q 010991 170 K-SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLKKENSKKKQALY 246 (496)
Q Consensus 170 ~-~~~~L~LTATp~r~d~~~~~l~~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~-~~~~yl~~~~~~~~~~l~ 246 (496)
+ ..+++++||||..... ..+..++ .|........ ..... ....+. .
T Consensus 191 ~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-----------~ 239 (394)
T 1fuu_A 191 PPTTQVVLLSATMPNDVL--EVTTKFMRNPVRILVKKD------------------ELTLEGIKQFYV-----------N 239 (394)
T ss_dssp CTTCEEEEECSSCCHHHH--HHHHHHCCSCEEEEECC-------------------------------------------
T ss_pred CCCceEEEEEEecCHHHH--HHHHHhcCCCeEEEecCc------------------cccCCCceEEEE-----------E
Confidence 3 3478999999964211 1111111 1111110000 00000 000010 0
Q ss_pred hh-CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 247 VM-NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 247 ~~-~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
.. ...|...+..+++.. .+.++||||+++.+++.+++.|. +..+||+++..+|.++++.|+++ +.++||+
T Consensus 240 ~~~~~~~~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~ 315 (394)
T 1fuu_A 240 VEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILIS 315 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCchhhHHHHHHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC-CCcEEEE
Confidence 11 112445555666543 36799999999999999999995 67899999999999999999998 8999998
Q ss_pred ee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 321 SK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 321 s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
|. .++.++|+..|.||+||+||.|+
T Consensus 316 T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 316 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp ----------------------------------------
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCC
Confidence 88 34566889999999999999984
No 23
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.98 E-value=3.9e-31 Score=291.83 Aligned_cols=314 Identities=17% Similarity=0.189 Sum_probs=194.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----C----CcEEEEEeChHHHHHH-HHHHHHh
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----K----KSCLCLATNAVSVDQW-AFQFKLW 91 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~----~~~LIl~P~~~L~~Qw-~~e~~~~ 91 (496)
..++|||||.+++.+++.+. +++|++|||+|||++++.++... . +++|||+|+++|+.|| .++|.+|
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGK---NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSC---CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCCCccHHHHHHHHHHHhCC---CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 46789999999999988864 89999999999999988777542 2 7899999999999999 9999999
Q ss_pred hCCCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HHHH-
Q 010991 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRK- 164 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~- 164 (496)
++. ...+..++|+.... +.+..+|+|+||++|.....+.... ....+....|++||+||||++... .|..
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~--~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG--EDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC----------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccc--cccceecccCcEEEEECccccCccchHHHH
Confidence 753 36788888875432 2256899999999998664321100 011223368999999999998643 2221
Q ss_pred ---HHHh-c-------------cCccEEEEeecCCCCccc--------hhhhhhhhCc-ccccc--CHHHHHhCCCCCcc
Q 010991 165 ---VISL-T-------------KSHCKLGLTATLVREDER--------ITDLNFLIGP-KLYEA--NWLDLVKGGFIANV 216 (496)
Q Consensus 165 ---~l~~-l-------------~~~~~L~LTATp~r~d~~--------~~~l~~l~gp-~~~~~--~~~~l~~~g~l~~~ 216 (496)
.+.. + +..++|+|||||...+.. +..+...+++ .+... ...++. .++..+
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~--~~~~~p 235 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLK--NQIQEP 235 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHH--HHSCCC
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHh--hhcCCC
Confidence 2211 1 445789999999986442 1223333333 22211 112222 122222
Q ss_pred eEEEEEcCC--CH---------------------------HHHHHHHhh-------------------------------
Q 010991 217 QCAEVWCPM--TK---------------------------EFFSEYLKK------------------------------- 236 (496)
Q Consensus 217 ~~~~v~~~~--~~---------------------------~~~~~yl~~------------------------------- 236 (496)
.....++.. .. ..|..++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 236 CKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222222211 00 000000000
Q ss_pred -----------------hcHH------------------HH-------------HHhhhh---CCCcHHHHHHHHHH-hh
Q 010991 237 -----------------ENSK------------------KK-------------QALYVM---NPNKFRACEFLIRF-HE 264 (496)
Q Consensus 237 -----------------~~~~------------------~~-------------~~l~~~---~~~K~~~l~~ll~~-~~ 264 (496)
.... .. ..+... ...|+..+..++.. ..
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 0000 00 000000 12344444445533 22
Q ss_pred hcC-CCeEEEEeccHHHHHHHHHHcC-----------CCeEEcC--------CCHHHHHHHHHHHhcCCCccEEEEee--
Q 010991 265 QQR-GDKIIVFADNLFALTEYAMKLR-----------KPMIYGA--------TSHVERTKILQAFKCSRDLNTIFLSK-- 322 (496)
Q Consensus 265 ~~~-g~kiIVF~~~~~~~~~l~~~L~-----------~~~i~G~--------~~~~eR~~il~~F~~~~~~~vlv~s~-- 322 (496)
..+ +.++||||+++.+++.+++.|. +..+||+ +++.+|.+++++|++| ++++||+|+
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g-~~~VLVaT~~~ 474 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG-KINLLIATTVA 474 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----CCSEEECSC
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC-CCcEEEEcccc
Confidence 134 7899999999999999999863 4578999 9999999999999998 999999998
Q ss_pred -------------ccCCCCChhHHHHHccCcCcCC
Q 010991 323 -------------ISSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 323 -------------i~~~~~s~~~~~Qr~GR~~R~g 344 (496)
.++.++|+..|+||+||++|.|
T Consensus 475 ~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 475 EEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred ccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 4577899999999999976654
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=1.5e-30 Score=268.18 Aligned_cols=305 Identities=16% Similarity=0.161 Sum_probs=201.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----CCcEEEEEeChHHHHHHHHHHHHhhCC-CC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (496)
..|+|+|.++++.++.+ ..+++++++|||+|||++++.++.. + ..++||++|+++|+.||.+.+.++... +.
T Consensus 46 ~~~~~~Q~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp CSCCHHHHHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 37999999999998876 1258999999999999997666543 2 237999999999999999999998653 45
Q ss_pred CcEEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-h----HHHHHHHhc
Q 010991 97 DQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-H----MFRKVISLT 169 (496)
Q Consensus 97 ~~v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~----~~~~~l~~l 169 (496)
..+....++.... .....+|+|+|++.+.....+. ..+...++++||+||||++.+ . ....+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 197 (412)
T 3fht_A 125 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 (412)
T ss_dssp CCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-------CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS
T ss_pred ceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-------CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC
Confidence 5677666654321 2345789999999986543221 011125789999999999875 2 233344444
Q ss_pred cC-ccEEEEeecCCCCccchhhhhhhh-CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhh
Q 010991 170 KS-HCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (496)
Q Consensus 170 ~~-~~~L~LTATp~r~d~~~~~l~~l~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~ 247 (496)
+. .+.+++||||...... ....++ .|........ ...........+.++...
T Consensus 198 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------------- 251 (412)
T 3fht_A 198 PRNCQMLLFSATFEDSVWK--FAQKVVPDPNVIKLKRE----EETLDTIKQYYVLCSSRD-------------------- 251 (412)
T ss_dssp CTTCEEEEEESCCCHHHHH--HHHHHSSSCEEECCCGG----GSSCTTEEEEEEECSSHH--------------------
T ss_pred CCCceEEEEEeecCHHHHH--HHHHhcCCCeEEeeccc----cccccCceEEEEEcCChH--------------------
Confidence 33 4789999999642211 111122 1222211111 011112222222222111
Q ss_pred hCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc-----CCCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 248 ~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
.|+..+..++... .+.++||||+++..++.+++.| .+..+||++++.+|..+++.|++| ++++||+|.
T Consensus 252 ---~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 324 (412)
T 3fht_A 252 ---EKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTN 324 (412)
T ss_dssp ---HHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCSEEEECG
T ss_pred ---HHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC-CCcEEEEcC
Confidence 1223444455443 4679999999999999999998 377899999999999999999998 899999998
Q ss_pred ---------------ccCCC------CChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHH
Q 010991 323 ---------------ISSHA------GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 381 (496)
Q Consensus 323 ---------------i~~~~------~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~ 381 (496)
.++.+ .+...|+||+||+||.|+ ...++.+++. ..+..+..+-++
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~-------------~g~~~~~~~~-~~~~~~~~~i~~ 390 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK-------------RGLAVNMVDS-KHSMNILNRIQE 390 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTC-------------CEEEEEEECS-HHHHHHHHHHHH
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCC-------------CceEEEEEcC-hhhHHHHHHHHH
Confidence 13444 356799999999999884 2456666653 223444444444
Q ss_pred HH
Q 010991 382 FL 383 (496)
Q Consensus 382 ~l 383 (496)
.+
T Consensus 391 ~~ 392 (412)
T 3fht_A 391 HF 392 (412)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=3.4e-31 Score=292.15 Aligned_cols=323 Identities=16% Similarity=0.169 Sum_probs=180.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----C----CcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K----KSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----~----~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
-.+|||||.+++++++.+. ++|+++|||+|||++++.++... . .++|||+|+++|+.||.++|.+++..
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~---~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp --CCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 3589999999999888764 89999999999999987776532 1 68999999999999999999999754
Q ss_pred CCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHH-hcCCccEEEEcCCcccCch-HHHHHHH
Q 010991 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~~l~ 167 (496)
.+..+..++|+.... +....+|+|+||++|.....+. .+ ....|++||+||||++.+. .|..++.
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~--------~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG--------TIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTT--------SSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcC--------cccccccccEEEEeCCCcccCcccHHHHHH
Confidence 466788888875421 1245889999999997553211 11 1257899999999999854 3443332
Q ss_pred h-----c-----cCccEEEEeecCCCCccc-----hhhhhhhh---Ccccc---ccCHHHHHhCCCCCcceEEEEEcCC-
Q 010991 168 L-----T-----KSHCKLGLTATLVREDER-----ITDLNFLI---GPKLY---EANWLDLVKGGFIANVQCAEVWCPM- 225 (496)
Q Consensus 168 ~-----l-----~~~~~L~LTATp~r~d~~-----~~~l~~l~---gp~~~---~~~~~~l~~~g~l~~~~~~~v~~~~- 225 (496)
. + +..++|+|||||..++.. ...+..++ +...+ .....++.. +...+......++.
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~--~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQ--VVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHH--HSCCCEEEEEECCCC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHh--hcCCCceeEEecCcc
Confidence 1 1 346899999999865432 11222111 11000 001111110 11111000000000
Q ss_pred --------------------------------------CHHHHHHHHhh-------------------------------
Q 010991 226 --------------------------------------TKEFFSEYLKK------------------------------- 236 (496)
Q Consensus 226 --------------------------------------~~~~~~~yl~~------------------------------- 236 (496)
....+..++..
T Consensus 238 ~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 238 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 317 (696)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH
Confidence 00000000000
Q ss_pred --------------------------------hcHHHHHHhh------------h----hCCCcHHHHHHHHHHh-hhcC
Q 010991 237 --------------------------------ENSKKKQALY------------V----MNPNKFRACEFLIRFH-EQQR 267 (496)
Q Consensus 237 --------------------------------~~~~~~~~l~------------~----~~~~K~~~l~~ll~~~-~~~~ 267 (496)
.....+.... . ....|+..+..++..+ ....
T Consensus 318 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 397 (696)
T 2ykg_A 318 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 397 (696)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCT
T ss_pred HHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCC
Confidence 0000000000 0 1345777777777654 1135
Q ss_pred CCeEEEEeccHHHHHHHHHHcC---------CCeE--------EcCCCHHHHHHHHHHHhc-CCCccEEEEee-------
Q 010991 268 GDKIIVFADNLFALTEYAMKLR---------KPMI--------YGATSHVERTKILQAFKC-SRDLNTIFLSK------- 322 (496)
Q Consensus 268 g~kiIVF~~~~~~~~~l~~~L~---------~~~i--------~G~~~~~eR~~il~~F~~-~~~~~vlv~s~------- 322 (496)
+.++||||+++..++.+++.|. +..+ ||++++++|.+++++|++ | ++++||+|.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g-~~~vLVaT~v~~~GiD 476 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG-DHNILIATSVADEGID 476 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCSCSEEEESSCCC--
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC-CccEEEEechhhcCCc
Confidence 7899999999999999999983 2335 569999999999999998 7 899999998
Q ss_pred --------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHH
Q 010991 323 --------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 374 (496)
Q Consensus 323 --------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~ 374 (496)
.++.++|+.+|+||+|| ||.+ .+.+|.|++.++.++.
T Consensus 477 ip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~--------------~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 477 IAQCNLVILYEYVGNVIKMIQTRGR-GRAR--------------GSKCFLLTSNAGVIEK 521 (696)
T ss_dssp -CCCSEEEEESCC--CCCC----------C--------------CCEEEEEESCHHHHHH
T ss_pred CccCCEEEEeCCCCCHHHHHHhhcc-CcCC--------------CceEEEEecCCCHHHH
Confidence 35677899999999999 9975 2456778888777553
No 26
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=1.6e-30 Score=280.91 Aligned_cols=288 Identities=15% Similarity=0.112 Sum_probs=189.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----------CCcEEEEEeChHHHHHHHHHHHHhh--
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWS-- 92 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----------~~~~LIl~P~~~L~~Qw~~e~~~~~-- 92 (496)
.|+|||.++++.++.+ .++++++++|||+|||++++.++... ..++|||+|+++|+.||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il~~-~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~ 121 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 121 (579)
T ss_dssp SCCHHHHHHHHHHHCS-SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhh
Confidence 5999999999998843 12589999999999999976665431 2379999999999999999999975
Q ss_pred --CCCCCcEEEEcCCcccc-----c-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH
Q 010991 93 --TIQDDQICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (496)
Q Consensus 93 --~~~~~~v~~~~g~~~~~-----~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~ 164 (496)
+++...+..+.|+.... + ...++|+|+|++.|.....+ . .......+++||+||||++.+..|..
T Consensus 122 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~------~-~~~~~~~~~~lViDEah~l~~~gf~~ 194 (579)
T 3sqw_A 122 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK------Y-SNKFFRFVDYKVLDEADRLLEIGFRD 194 (579)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHH------H-HHHHCTTCCEEEEETHHHHTSTTTHH
T ss_pred cccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHh------c-cccccccCCEEEEEChHHhhcCCCHH
Confidence 44555666666654311 1 23578999999999754221 1 12223679999999999998654443
Q ss_pred ----HHHhcc--------CccEEEEeecCCCCccchhhhhhhhCc-cccccCHHHHHhCCCCCcceEEEEEcCCCHHHHH
Q 010991 165 ----VISLTK--------SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231 (496)
Q Consensus 165 ----~l~~l~--------~~~~L~LTATp~r~d~~~~~l~~l~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~ 231 (496)
++..+. ...+++||||+...... ....+++. .......................+.++.....
T Consensus 195 ~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 270 (579)
T 3sqw_A 195 DLETISGILNEKNSKSADNIKTLLFSATLDDKVQK--LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS-- 270 (579)
T ss_dssp HHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH--HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH--
T ss_pred HHHHHHHHhhhhhcccccCceEEEEeccCChHHHH--HHHHHcCCCceEEEeecCccccccccccceEEEEecchhhh--
Confidence 333332 23689999998642111 11111111 11000000000000111111111222211111
Q ss_pred HHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhh-cCCCeEEEEeccHHHHHHHHHHcC--------CCeEEcCCCHHHH
Q 010991 232 EYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVER 302 (496)
Q Consensus 232 ~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~-~~g~kiIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR 302 (496)
+...+..+...... ..+.++||||+++..++.+++.|. +..+||++++.+|
T Consensus 271 --------------------~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 271 --------------------IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp --------------------HHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred --------------------HHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 01222333322211 457899999999999999998883 4569999999999
Q ss_pred HHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 303 TKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 303 ~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++++.|+++ ++++||+|. .++.+.++..|+||+||+||.|+
T Consensus 331 ~~~~~~F~~g-~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 387 (579)
T 3sqw_A 331 TSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGK 387 (579)
T ss_dssp HHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTC
T ss_pred HHHHHHhhcC-CCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCC
Confidence 9999999998 899999998 35667899999999999999984
No 27
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=3.3e-30 Score=277.78 Aligned_cols=277 Identities=16% Similarity=0.157 Sum_probs=196.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEc
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (496)
..+||+|.++++.++.+. ++++++|||+|||++++.++....+.+|||+|+++|+.||.+.+..+ ++ .+..++
T Consensus 43 ~~~rp~Q~~~i~~il~g~---d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~-gi---~~~~l~ 115 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGK---EVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-GI---SATMLN 115 (591)
T ss_dssp CSCCTTHHHHHHHHHTTC---CEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHH-TC---CEEECC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhc-CC---cEEEEe
Confidence 379999999999988864 89999999999999988888878889999999999999999999997 33 567777
Q ss_pred CCcccc-----------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch------HHH---
Q 010991 104 SDSKER-----------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR--- 163 (496)
Q Consensus 104 g~~~~~-----------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~--- 163 (496)
|+.... ..+..+|+++||++|..... -...+...+....+++||+||||++... .|.
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~---~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~ 192 (591)
T 2v1x_A 116 ASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM---FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALG 192 (591)
T ss_dssp SSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH---HHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGG
T ss_pred CCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH---HHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHH
Confidence 764321 14568999999999864200 0011112233468999999999998742 222
Q ss_pred HHHHhccCccEEEEeecCCCCccchhhhhhhhC---ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 164 ~~l~~l~~~~~L~LTATp~r~d~~~~~l~~l~g---p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
.+...++...+++|||||.... ..++...++ +..+. .++..+.....+.....
T Consensus 193 ~l~~~~~~~~ii~lSAT~~~~v--~~~i~~~l~~~~~~~~~--------~~~~r~nl~~~v~~~~~-------------- 248 (591)
T 2v1x_A 193 ILKRQFPNASLIGLTATATNHV--LTDAQKILCIEKCFTFT--------ASFNRPNLYYEVRQKPS-------------- 248 (591)
T ss_dssp HHHHHCTTSEEEEEESSCCHHH--HHHHHHHTTCCSCEEEE--------CCCCCTTEEEEEEECCS--------------
T ss_pred HHHHhCCCCcEEEEecCCCHHH--HHHHHHHhCCCCcEEEe--------cCCCCcccEEEEEeCCC--------------
Confidence 2334455678999999996421 112222222 11111 22222222222221111
Q ss_pred HHHHhhhhCCCcHHHHHHHHHHhhh-cCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCC
Q 010991 241 KKQALYVMNPNKFRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (496)
Q Consensus 241 ~~~~l~~~~~~K~~~l~~ll~~~~~-~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~ 314 (496)
.+...+..|++.... ..+.++||||+++..++.++..|. +..+||++++++|.++++.|+++ +
T Consensus 249 ----------~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g-~ 317 (591)
T 2v1x_A 249 ----------NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN-E 317 (591)
T ss_dssp ----------SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-S
T ss_pred ----------cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-C
Confidence 011222333333321 257899999999999999999993 67899999999999999999998 9
Q ss_pred ccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 315 LNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 315 ~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+++||+|. .++.+.|...|+|++||+||.|.
T Consensus 318 ~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~ 363 (591)
T 2v1x_A 318 IQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDM 363 (591)
T ss_dssp SSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSS
T ss_pred CeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCC
Confidence 99999998 35677899999999999999884
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=1.7e-30 Score=279.65 Aligned_cols=288 Identities=15% Similarity=0.108 Sum_probs=187.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----------CCcEEEEEeChHHHHHHHHHHHHhh--
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWS-- 92 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----------~~~~LIl~P~~~L~~Qw~~e~~~~~-- 92 (496)
.|+|+|.++++.++.+ ..++.++++|||+|||++++.++... ..++|||+|+++|+.||.+++.+++
T Consensus 94 ~~~~~Q~~~i~~~l~~-~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp SCCHHHHHHHHHHHSS-SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC-CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 5999999999998853 12589999999999999976665431 1379999999999999999999874
Q ss_pred --CCCCCcEEEEcCCcccc------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH
Q 010991 93 --TIQDDQICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (496)
Q Consensus 93 --~~~~~~v~~~~g~~~~~------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~ 164 (496)
+++...+..+.|+.... ....++|+|+|++.|.....+ . .......+++||+||||++.+..|..
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~------~-~~~~~~~~~~lViDEah~l~~~~f~~ 245 (563)
T 3i5x_A 173 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK------Y-SNKFFRFVDYKVLDEADRLLEIGFRD 245 (563)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHH------H-HHHHCTTCCEEEEETHHHHTSTTTHH
T ss_pred ccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHh------c-cccccccceEEEEeCHHHHhccchHH
Confidence 34445566666654311 124678999999999754221 1 11223679999999999998654443
Q ss_pred HH----Hhcc--------CccEEEEeecCCCCccchhhhhhhhCc-cccccCHHHHHhCCCCCcceEEEEEcCCCHHHHH
Q 010991 165 VI----SLTK--------SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231 (496)
Q Consensus 165 ~l----~~l~--------~~~~L~LTATp~r~d~~~~~l~~l~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~ 231 (496)
.+ ..+. ...+++||||+...... ....+++. .......................+.++......
T Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 322 (563)
T 3i5x_A 246 DLETISGILNEKNSKSADNIKTLLFSATLDDKVQK--LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSI- 322 (563)
T ss_dssp HHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH--HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHH-
T ss_pred HHHHHHHhhhhccccCccCceEEEEEccCCHHHHH--HHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhH-
Confidence 33 3322 23589999999642111 11111111 111000000000001111111112222111110
Q ss_pred HHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhh-cCCCeEEEEeccHHHHHHHHHHcC--------CCeEEcCCCHHHH
Q 010991 232 EYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVER 302 (496)
Q Consensus 232 ~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~-~~g~kiIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR 302 (496)
...+..+...... ..+.++||||+++..++.++..|. +..+||++++.+|
T Consensus 323 ---------------------~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R 381 (563)
T 3i5x_A 323 ---------------------FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 381 (563)
T ss_dssp ---------------------HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred ---------------------HHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHH
Confidence 0122223222211 457899999999999999999883 4568999999999
Q ss_pred HHHHHHHhcCCCccEEEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 303 TKILQAFKCSRDLNTIFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 303 ~~il~~F~~~~~~~vlv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
..+++.|+++ ++++||+|. .++.+.++..|+||+||+||.|.
T Consensus 382 ~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 438 (563)
T 3i5x_A 382 TSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGK 438 (563)
T ss_dssp HHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTC
T ss_pred HHHHHHHhcC-CCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCC
Confidence 9999999998 999999998 35666799999999999999984
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-30 Score=289.87 Aligned_cols=316 Identities=16% Similarity=0.078 Sum_probs=208.3
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
....++|+|||.+++..+..+. ++++++|||+|||+++..++.. .+.++||++|+++|+.||.++|.++++
T Consensus 81 ~~~~f~L~~~Q~eai~~l~~g~---~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 81 RTYPFTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTC---EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred HhCCCCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 3456789999999999887764 8999999999999997666554 367999999999999999999999875
Q ss_pred CcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhccC-
Q 010991 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKS- 171 (496)
Q Consensus 97 ~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~~- 171 (496)
.++.++|+... ...++|+|+|+++|.+...+. .....++++||+||||++.+. .+..++..++.
T Consensus 155 -~vglltGd~~~--~~~~~IvV~Tpe~L~~~L~~~--------~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 -DVGLMTGDITI--NPDAGCLVMTTEILRSMLYRG--------SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp -CEEEECSSCEE--CTTCSEEEEEHHHHHHHHHHT--------CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred -CEEEEeCCCcc--CCCCCEEEEcHHHHHHHHHcC--------cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 68889988663 446789999999987542211 011257899999999999764 45666666654
Q ss_pred ccEEEEeecCCCCccchhhhhhhhC-cc-ccccCHHHHHhCCCCCcceEEEEEcC-------------CCHHHHHHHHhh
Q 010991 172 HCKLGLTATLVREDERITDLNFLIG-PK-LYEANWLDLVKGGFIANVQCAEVWCP-------------MTKEFFSEYLKK 236 (496)
Q Consensus 172 ~~~L~LTATp~r~d~~~~~l~~l~g-p~-~~~~~~~~l~~~g~l~~~~~~~v~~~-------------~~~~~~~~yl~~ 236 (496)
.++|+||||+.+..+....+....+ +. ++... +-..+......+.+ .....+...+..
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~-------~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN-------FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC-------CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC-------CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 4789999998764433233332222 11 11110 01111111111111 011112111100
Q ss_pred hcHHHHHH-------hhhhCCCc--------HHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------------
Q 010991 237 ENSKKKQA-------LYVMNPNK--------FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------------ 289 (496)
Q Consensus 237 ~~~~~~~~-------l~~~~~~K--------~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------------ 289 (496)
........ -......| ...+..++..+....+.++||||.++..++.++..|.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 376 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 376 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHH
Confidence 00000000 00000001 2234445544432345699999999999999988874
Q ss_pred --------------------------------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--------------c
Q 010991 290 --------------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK--------------I 323 (496)
Q Consensus 290 --------------------------------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--------------i 323 (496)
+.++||++++.+|..+++.|++| .+++||+|+ +
T Consensus 377 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G-~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 377 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT-CCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC-CCcEEEEehHhhccCCCCCceEEE
Confidence 24589999999999999999998 999999999 1
Q ss_pred -----cCC----CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCCh
Q 010991 324 -----SSH----AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 371 (496)
Q Consensus 324 -----~~~----~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~ 371 (496)
++. +.|+.+|.||+||+||.|. ...+.+|.+++.+..
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~-----------d~~G~vi~l~~~~~e 501 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL-----------DDRGIVIMMIDEKME 501 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTT-----------CSSEEEEEEECSCCC
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCC-----------CCceEEEEEECCCCC
Confidence 222 4589999999999999994 234777878876543
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=2.8e-30 Score=275.10 Aligned_cols=268 Identities=16% Similarity=0.165 Sum_probs=194.7
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEc
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (496)
..+||+|.++++.++.+. ++++++|||+|||++++.++....+.+|||+|+++|+.||.+++..+ ++ .+..++
T Consensus 24 ~~~r~~Q~~~i~~il~g~---d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~-gi---~~~~l~ 96 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGR---DCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQAN-GV---AAACLN 96 (523)
T ss_dssp SSCCTTHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHT-TC---CEEEEC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHHc-CC---cEEEEe
Confidence 378999999999988764 89999999999999988888777889999999999999999999985 33 566666
Q ss_pred CCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch------HHH---HH
Q 010991 104 SDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR---KV 165 (496)
Q Consensus 104 g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~---~~ 165 (496)
++.... ..+..+|+++||++|... ...+.+...++++||+||||++... .+. .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--------~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l 168 (523)
T 1oyw_A 97 STQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--------NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL 168 (523)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--------THHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGH
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--------HHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHH
Confidence 654311 135688999999999643 1234555578999999999999742 233 23
Q ss_pred HHhccCccEEEEeecCCCCccchhhhhhhh---CccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHH
Q 010991 166 ISLTKSHCKLGLTATLVREDERITDLNFLI---GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (496)
Q Consensus 166 l~~l~~~~~L~LTATp~r~d~~~~~l~~l~---gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~ 242 (496)
...++...+++|||||..... .++...+ .|.++. .++-.+.....+. +
T Consensus 169 ~~~~~~~~~i~lSAT~~~~~~--~~i~~~l~~~~~~~~~--------~~~~r~~l~~~v~-~------------------ 219 (523)
T 1oyw_A 169 RQRFPTLPFMALTATADDTTR--QDIVRLLGLNDPLIQI--------SSFDRPNIRYMLM-E------------------ 219 (523)
T ss_dssp HHHCTTSCEEEEESCCCHHHH--HHHHHHHTCCSCEEEE--------CCCCCTTEEEEEE-E------------------
T ss_pred HHhCCCCCEEEEeCCCCHHHH--HHHHHHhCCCCCeEEe--------CCCCCCceEEEEE-e------------------
Confidence 344555688999999974321 1222222 122211 1111111111111 1
Q ss_pred HHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccE
Q 010991 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (496)
Q Consensus 243 ~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~v 317 (496)
...+...+..++.. .++.++||||+++..++.+++.|. +..+||++++++|.++++.|+++ ++++
T Consensus 220 ------~~~~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~v 289 (523)
T 1oyw_A 220 ------KFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQI 289 (523)
T ss_dssp ------CSSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSE
T ss_pred ------CCCHHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeE
Confidence 11222233333333 357899999999999999999994 56799999999999999999998 8999
Q ss_pred EEEee---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 318 IFLSK---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 318 lv~s~---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
||+|. .++.+.|...|+||+||+||.|.
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~ 332 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGL 332 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSS
T ss_pred EEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCC
Confidence 99998 34667899999999999999984
No 31
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=287.68 Aligned_cols=316 Identities=17% Similarity=0.117 Sum_probs=208.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
...++|+|+|.+++..++.+. ++++++|||+|||+++..++... ++++||++|+++|+.||.++|..+++
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~---dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~---- 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG---- 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTC---CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----
T ss_pred hCCCCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----
Confidence 456789999999999876654 89999999999999987776543 67899999999999999999999865
Q ss_pred cEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH----HHHHHHhccC-c
Q 010991 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLTKS-H 172 (496)
Q Consensus 98 ~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~l~~-~ 172 (496)
.++.++|+.. ....++|+|+|++.|.+...+.. ..+ .++++||+||||++.+.. +..++..++. .
T Consensus 253 ~VglltGd~~--~~~~~~IlV~Tpe~L~~~L~~~~------~~l--~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 253 DVGLMTGDIT--INPDAGCLVMTTEILRSMLYRGS------EVM--REVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp SEEEECSSCB--CCCSCSEEEEEHHHHHHHHHHCS------SHH--HHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred CccEEeCccc--cCCCCCEEEeChHHHHHHHHcCc------ccc--ccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 6888888866 35668999999998876533221 112 468999999999998764 4555555654 4
Q ss_pred cEEEEeecCCCCccchhhhhhhhCc-c-ccccCHHHHHhCCCCCcceEEEEEcC-------------CCHHHHHHHHhhh
Q 010991 173 CKLGLTATLVREDERITDLNFLIGP-K-LYEANWLDLVKGGFIANVQCAEVWCP-------------MTKEFFSEYLKKE 237 (496)
Q Consensus 173 ~~L~LTATp~r~d~~~~~l~~l~gp-~-~~~~~~~~l~~~g~l~~~~~~~v~~~-------------~~~~~~~~yl~~~ 237 (496)
++|+||||+.+..+....+....+. . +....+ --.+.....+... .....+...+...
T Consensus 323 qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~-------rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l 395 (1108)
T 3l9o_A 323 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF-------RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 395 (1108)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC-------CSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC-------CcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHH
Confidence 7899999987654433333322221 1 111110 0111111111100 0111111111000
Q ss_pred cH------------HHHHHhhhhCCCc---HHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------------
Q 010991 238 NS------------KKKQALYVMNPNK---FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------------- 289 (496)
Q Consensus 238 ~~------------~~~~~l~~~~~~K---~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------------- 289 (496)
.. ............+ ...+..++..+....+.++||||.++..++.++..|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 475 (1108)
T 3l9o_A 396 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 475 (1108)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CH
T ss_pred HhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 00 0000000000001 2344455555443456799999999999999999874
Q ss_pred -------------------------------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------ccC
Q 010991 290 -------------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------ISS 325 (496)
Q Consensus 290 -------------------------------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~~ 325 (496)
+.++||++++.+|..+++.|++| .+++||+|+ ++.
T Consensus 476 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G-~ikVLVAT~vla~GIDiP~v~~VI~ 554 (1108)
T 3l9o_A 476 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFT 554 (1108)
T ss_dssp HHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT-CCCEEEEESCCCSCCCC--CEEEES
T ss_pred HHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC-CCeEEEECcHHhcCCCCCCceEEEe
Confidence 36699999999999999999998 999999999 111
Q ss_pred ------C----CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChH
Q 010991 326 ------H----AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 372 (496)
Q Consensus 326 ------~----~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e 372 (496)
. +-|+..|+||+||+||.|. ...+.+|.+++....+
T Consensus 555 ~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~-----------d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 555 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGL-----------DDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp CSEEESSSCEEECCHHHHHHHHHHSCCSSS-----------CSSEEEEEEECCCCCH
T ss_pred cCcccCccccccCCHHHHHHhhcccCCCCC-----------CCceEEEEEecCCcCH
Confidence 1 2377889999999999994 2357788888766433
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=1.1e-29 Score=263.08 Aligned_cols=276 Identities=18% Similarity=0.135 Sum_probs=191.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.++|+|+|.++++.++.+. +.++++|||+|||++++.++.. .+.++|||+|+++|+.||.+++.+|+. .+..+
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~---~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v 94 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKI 94 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTC---CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCE
T ss_pred CCCCCHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceE
Confidence 4578999999999988764 8999999999999987776654 457899999999999999999999876 56688
Q ss_pred EEEcCCccc--------cc-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-----------
Q 010991 100 CRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA----------- 159 (496)
Q Consensus 100 ~~~~g~~~~--------~~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~----------- 159 (496)
..++|+... .+ .+.++|+|+|++.+... +..+...++++||+||||++..
T Consensus 95 ~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~----------l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHC----------HHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHH----------HHHhccccccEEEEeChHhhhhccchhhhHHhh
Confidence 888887643 11 24489999999999644 2345557999999999998652
Q ss_pred ----hH-HHHHHHhc------------cCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEE
Q 010991 160 ----HM-FRKVISLT------------KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222 (496)
Q Consensus 160 ----~~-~~~~l~~l------------~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~ 222 (496)
+. +..++..+ .....+++||||............+++..+.. ....... .....
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--i~~~~ 235 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-------LVSVARN--ITHVR 235 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-------CCCCCCS--EEEEE
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-------ccccccc--chhee
Confidence 12 45555555 34578999999543322211111122110000 0001111 11111
Q ss_pred cCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CC-eEEcC
Q 010991 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KP-MIYGA 296 (496)
Q Consensus 223 ~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~-~i~G~ 296 (496)
... .|...+..++... +.++||||+++..++.++..|. +. .+||.
T Consensus 236 ~~~-------------------------~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 236 ISS-------------------------RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp ESS-------------------------CCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred ecc-------------------------CHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 111 2333444555442 5799999999999999999984 33 56774
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEE----ee----------------ccCCC--CChhHHHHHccCcCcCCCCccccccCC
Q 010991 297 TSHVERTKILQAFKCSRDLNTIFL----SK----------------ISSHA--GSRRQEAQRLGRILRAKGKLEDRMAGG 354 (496)
Q Consensus 297 ~~~~eR~~il~~F~~~~~~~vlv~----s~----------------i~~~~--~s~~~~~Qr~GR~~R~g~~~~~~~~~~ 354 (496)
+|. ++.|++| ++++||+ |+ .++.+ .|+..|+||+||+||.|.+.
T Consensus 287 ----~r~--~~~f~~g-~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~------- 352 (414)
T 3oiy_A 287 ----EKN--FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGV------- 352 (414)
T ss_dssp ----HHH--HHHHHTT-SCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTE-------
T ss_pred ----chH--HHHHhCC-CCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCC-------
Confidence 444 9999998 9999999 55 13455 78999999999999998420
Q ss_pred CCceeEEEEEEE
Q 010991 355 KEEYNAFFYSLV 366 (496)
Q Consensus 355 ~~~~~~~vy~lv 366 (496)
.+.+.++.++
T Consensus 353 --~~~g~~i~~~ 362 (414)
T 3oiy_A 353 --LVKGVSVIFE 362 (414)
T ss_dssp --ECCEEEEEEC
T ss_pred --CcceEEEEEE
Confidence 0356777777
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=3.3e-29 Score=287.89 Aligned_cols=297 Identities=16% Similarity=0.154 Sum_probs=202.6
Q ss_pred CCCCCCcHHHHHHHHHHHhc---CCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 21 KPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
...++++|+|.++++.++.. ++..++++++|||+|||++++.++. ..+++++||||+++|+.||.++|.+++.-
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 45678999999999998863 4334899999999999999876553 34678999999999999999999988654
Q ss_pred CCCcEEEEcCCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHH
Q 010991 95 QDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~ 165 (496)
.+..+..+++..... ..+..+|+|+|++.+..... ..++++||+||||++...... .
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~-------------~~~l~lvIiDEaH~~g~~~~~-~ 744 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK-------------FKDLGLLIVDEEHRFGVRHKE-R 744 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCC-------------CSSEEEEEEESGGGSCHHHHH-H
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcc-------------ccccceEEEechHhcChHHHH-H
Confidence 456777777643211 13468999999998864321 268999999999998765544 4
Q ss_pred HHhcc-CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHH
Q 010991 166 ISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (496)
Q Consensus 166 l~~l~-~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~ 244 (496)
+..+. ..++|+|||||....... .+..+..+...... -...........+....
T Consensus 745 l~~l~~~~~vl~lSATp~p~~l~~-~~~~~~~~~~i~~~--------~~~r~~i~~~~~~~~~~---------------- 799 (1151)
T 2eyq_A 745 IKAMRANVDILTLTATPIPRTLNM-AMSGMRDLSIIATP--------PARRLAVKTFVREYDSM---------------- 799 (1151)
T ss_dssp HHHHHTTSEEEEEESSCCCHHHHH-HHTTTSEEEECCCC--------CCBCBCEEEEEEECCHH----------------
T ss_pred HHHhcCCCCEEEEcCCCChhhHHH-HHhcCCCceEEecC--------CCCccccEEEEecCCHH----------------
Confidence 44444 457999999997432110 01011001000000 00001111111121111
Q ss_pred hhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-------CCeEEcCCCHHHHHHHHHHHhcCCCccE
Q 010991 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNT 317 (496)
Q Consensus 245 l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~~~~~v 317 (496)
.+...++..+ .+|.+++|||+++..++.+++.|. +..+||++++.+|.++++.|++| ++++
T Consensus 800 ---------~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-~~~V 867 (1151)
T 2eyq_A 800 ---------VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNV 867 (1151)
T ss_dssp ---------HHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCE
T ss_pred ---------HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-CCcE
Confidence 2233344443 468899999999999998888873 56799999999999999999998 9999
Q ss_pred EEEee--------------c-cCC-CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHH
Q 010991 318 IFLSK--------------I-SSH-AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 381 (496)
Q Consensus 318 lv~s~--------------i-~~~-~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~ 381 (496)
||+|+ + ... .++..++.||+||+||.|. .+++|.+++.+......+.+|.+
T Consensus 868 LVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~-------------~g~~~ll~~~~~~l~~~~~~rl~ 934 (1151)
T 2eyq_A 868 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQKRLE 934 (1151)
T ss_dssp EEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTB-------------CEEEEEEECCGGGSCHHHHHHHH
T ss_pred EEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCC-------------ceEEEEEECCccccCHHHHHHHH
Confidence 99999 1 222 4688999999999999884 35667777665433334444443
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.7e-30 Score=274.68 Aligned_cols=279 Identities=16% Similarity=0.145 Sum_probs=172.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.|+|+|.+++..++.++ .+++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+++......
T Consensus 141 ~p~~~Q~~ai~~i~~~~-~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNP-PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp ECCCTTSSSHHHHHCSS-CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred CcHHHHHHHHHHHHcCC-CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 58999999999988771 2589999999999999976665542 3379999999999999999999987544444
Q ss_pred EEEEcCCcc-ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-h----HHHHHHHhccC-
Q 010991 99 ICRFTSDSK-ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-H----MFRKVISLTKS- 171 (496)
Q Consensus 99 v~~~~g~~~-~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~----~~~~~l~~l~~- 171 (496)
+....++.. ......++|+|+|++++.....+. .+....+++||+||||++.+ . .+..+...++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~--------~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~ 291 (508)
T 3fho_A 220 TAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRR--------QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN 291 (508)
T ss_dssp EEC----------CCCCSEEEECHHHHHHHHHTT--------CSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTT
T ss_pred EEEEeCCcccccccCCCCEEEECHHHHHHHHHcC--------CccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcC
Confidence 443333322 222346889999999986542211 11236789999999999876 2 34445555543
Q ss_pred ccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCC
Q 010991 172 HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (496)
Q Consensus 172 ~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~ 250 (496)
.++++|||||...... ....+.+ +........... ........+.+....
T Consensus 292 ~~~i~lSAT~~~~~~~--~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~----------------------- 342 (508)
T 3fho_A 292 TQIVLFSATFSERVEK--YAERFAPNANEIRLKTEELS----VEGIKQLYMDCQSEE----------------------- 342 (508)
T ss_dssp CEEEEEESCCSTHHHH--HHHHHSTTCEEECCCCCC--------CCCCEEEEC--CH-----------------------
T ss_pred CeEEEEeCCCCHHHHH--HHHHhcCCCeEEEeccccCC----cccceEEEEECCchH-----------------------
Confidence 4679999999642221 1111111 111111100000 000111111111110
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---
Q 010991 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK--- 322 (496)
Q Consensus 251 ~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--- 322 (496)
.|...+..++... .+.++||||+++.+++.++..|. +..+||+++..+|..+++.|++| ++++||+|.
T Consensus 343 ~k~~~l~~ll~~~---~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g-~~~VLVaT~~l~ 418 (508)
T 3fho_A 343 HKYNVLVELYGLL---TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG-TSKVLVTTNVIA 418 (508)
T ss_dssp HHHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS-SCCCCEECC---
T ss_pred HHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEeCChhh
Confidence 1223344444332 46799999999999999999984 67899999999999999999998 899999998
Q ss_pred ------------ccCCC------CChhHHHHHccCcCcCCC
Q 010991 323 ------------ISSHA------GSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 ------------i~~~~------~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.+ .|+..|.||+||+||.|+
T Consensus 419 ~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~ 459 (508)
T 3fho_A 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGR 459 (508)
T ss_dssp --CCCTTCCEEEC----CC-----CTHHHHHTTSCCC----
T ss_pred cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCC
Confidence 12333 678899999999999884
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=3.2e-28 Score=275.99 Aligned_cols=320 Identities=15% Similarity=0.085 Sum_probs=206.5
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 20 l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
....++|+|+|.+++..++.+. ++++++|||+|||+++..++.. .+.++||++|+++|+.||.++|.+++ ++
T Consensus 34 ~~~~f~l~~~Q~~aI~~il~g~---~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~--~~ 108 (997)
T 4a4z_A 34 RSWPFELDTFQKEAVYHLEQGD---SVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETF--DD 108 (997)
T ss_dssp CCCSSCCCHHHHHHHHHHHTTC---EEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred HhCCCCCCHHHHHHHHHHHcCC---CEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHc--CC
Confidence 3456789999999999888764 8999999999999986655543 45689999999999999999999874 35
Q ss_pred CcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhccC-
Q 010991 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKS- 171 (496)
Q Consensus 97 ~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~~- 171 (496)
..++.++|+... ....+|+|+|++.|.+...+. .....++++||+||||++.+. .+..++..++.
T Consensus 109 ~~v~~l~G~~~~--~~~~~IlV~Tpe~L~~~l~~~--------~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 109 VNIGLITGDVQI--NPDANCLIMTTEILRSMLYRG--------ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp CCEEEECSSCEE--CTTSSEEEEEHHHHHHHHHHT--------CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CeEEEEeCCCcc--CCCCCEEEECHHHHHHHHHhC--------chhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 678889888653 456889999999996542211 011257899999999999754 57788887765
Q ss_pred ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEE--------EEEcC---CCHHHHHHHHhhhcH-
Q 010991 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA--------EVWCP---MTKEFFSEYLKKENS- 239 (496)
Q Consensus 172 ~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~--------~v~~~---~~~~~~~~yl~~~~~- 239 (496)
..+|+|||||....+....+....+..++.... .+--.|.... .+... .....+.........
T Consensus 179 v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~-----~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (997)
T 4a4z_A 179 VKFILLSATVPNTYEFANWIGRTKQKNIYVIST-----PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGE 253 (997)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTCCEEEEEC-----SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--
T ss_pred CCEEEEcCCCCChHHHHHHHhcccCCceEEEec-----CCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcc
Confidence 478999999875443222222111111100000 0000111110 00000 011111100000000
Q ss_pred ------------------------------------------------------HH-HHHhh--hhCCCcHHHHHHHHHH
Q 010991 240 ------------------------------------------------------KK-KQALY--VMNPNKFRACEFLIRF 262 (496)
Q Consensus 240 ------------------------------------------------------~~-~~~l~--~~~~~K~~~l~~ll~~ 262 (496)
.. ..... .....++ ..++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~li~~ 330 (997)
T 4a4z_A 254 SAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTW---PEIVNY 330 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTHH---HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHH---HHHHHH
Confidence 00 00000 0112223 344444
Q ss_pred hhhcCCCeEEEEeccHHHHHHHHHHcC--------------------------------------------CCeEEcCCC
Q 010991 263 HEQQRGDKIIVFADNLFALTEYAMKLR--------------------------------------------KPMIYGATS 298 (496)
Q Consensus 263 ~~~~~g~kiIVF~~~~~~~~~l~~~L~--------------------------------------------~~~i~G~~~ 298 (496)
+......++||||.++..++.++..|. +..+||+++
T Consensus 331 l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~ 410 (997)
T 4a4z_A 331 LRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLL 410 (997)
T ss_dssp HHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCC
Confidence 432446799999999999999999883 367899999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEee--------------ccCCCC---------ChhHHHHHccCcCcCCCCccccccCCC
Q 010991 299 HVERTKILQAFKCSRDLNTIFLSK--------------ISSHAG---------SRRQEAQRLGRILRAKGKLEDRMAGGK 355 (496)
Q Consensus 299 ~~eR~~il~~F~~~~~~~vlv~s~--------------i~~~~~---------s~~~~~Qr~GR~~R~g~~~~~~~~~~~ 355 (496)
+.+|..+++.|++| .+++||+|. +.+... |+..|.|++||+||.|.
T Consensus 411 ~~~R~~v~~~F~~G-~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~---------- 479 (997)
T 4a4z_A 411 PIVKELIEILFSKG-FIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL---------- 479 (997)
T ss_dssp HHHHHHHHHHHHTT-CCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTT----------
T ss_pred HHHHHHHHHHHHCC-CCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCC----------
Confidence 99999999999998 999999999 111212 89999999999999994
Q ss_pred CceeEEEEEEEcCCChHHH
Q 010991 356 EEYNAFFYSLVSTDTQEMF 374 (496)
Q Consensus 356 ~~~~~~vy~lvs~~t~e~~ 374 (496)
...+.+|.+...+..+..
T Consensus 480 -~~~G~vi~l~~~~~~~~~ 497 (997)
T 4a4z_A 480 -DSTGTVIVMAYNSPLSIA 497 (997)
T ss_dssp -CSSEEEEEECCSSCCCHH
T ss_pred -CcceEEEEecCCCcchHH
Confidence 234667767655554443
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=4.6e-30 Score=270.94 Aligned_cols=281 Identities=16% Similarity=0.129 Sum_probs=110.6
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCC-CC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (496)
..|+|+|.++++.++.+ ..++.++++|||+|||++++.++... ..++|||+|+++|+.||.+.+.++... +.
T Consensus 113 ~~p~~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp CSCCHHHHHHHHHHTSB-SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCHHHHHHHHHHHcC-CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 36899999999988875 12589999999999999977666542 127999999999999999999887653 44
Q ss_pred CcEEEEcCCccc--cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-hHHHH----HHHhc
Q 010991 97 DQICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRK----VISLT 169 (496)
Q Consensus 97 ~~v~~~~g~~~~--~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~----~l~~l 169 (496)
..+....++... ......+|+|+|++.|.....+. ..+...++++||+||||++.+ ..|.. +...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-------CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred ceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc-------CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 556665555332 12345689999999986543211 011125789999999999875 33332 33333
Q ss_pred cC-ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhh
Q 010991 170 KS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (496)
Q Consensus 170 ~~-~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~ 248 (496)
.. ..++++||||...... ....+ +..+....+... ... .....+..+.+.
T Consensus 265 ~~~~~~i~~SAT~~~~~~~--~~~~~------------------~~~~~~i~~~~~--~~~-------~~~~~~~~~~~~ 315 (479)
T 3fmp_B 265 PRNCQMLLFSATFEDSVWK--FAQKV------------------VPDPNVIKLKRE--EET-------LDTIKQYYVLCS 315 (479)
T ss_dssp CTTSEEEEEESCCCHHHHH--HHHHH------------------SSSEEEEEEC--------------------------
T ss_pred CccceEEEEeCCCCHHHHH--HHHHH------------------cCCCeEEecccc--ccC-------cCCceEEEEEeC
Confidence 32 4689999999642211 00011 111111111100 000 000000111111
Q ss_pred -CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 249 -NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 249 -~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
...|+..+..++... .+.++||||+++..++.++..|. +.++||++++.+|..+++.|++| ++++||+|.
T Consensus 316 ~~~~~~~~l~~~~~~~---~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~iLv~T~ 391 (479)
T 3fmp_B 316 SRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhc---cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC-CCcEEEEcc
Confidence 123445555555443 36789999999999999999984 67899999999999999999998 899999998
Q ss_pred ---------------ccCCC------CChhHHHHHccCcCcCCC
Q 010991 323 ---------------ISSHA------GSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 ---------------i~~~~------~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.+ .+...|+||+||+||.|+
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~ 435 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 435 (479)
T ss_dssp --------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCC
Confidence 12222 244789999999999884
No 37
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=7.3e-29 Score=280.06 Aligned_cols=319 Identities=14% Similarity=0.142 Sum_probs=214.4
Q ss_pred CCCcHHHHHHHHHHHhc-----------CCCcceEEEeCCCCChHHHHHHHHHhcC-----CcEEEEEeChHHHHHHHHH
Q 010991 24 AQPRPYQEKSLSKMFGN-----------GRARSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQ 87 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~-----------~~~~~~il~~~tG~GKTl~~i~~~~~~~-----~~~LIl~P~~~L~~Qw~~e 87 (496)
..|||||.+|+++++.. ...++++++++||+|||++++.++..+. .++|||||+++|+.||.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 46999999999998752 0125799999999999999877765432 4899999999999999999
Q ss_pred HHHhhCCCCCcEEEEcCCcc----ccc-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-H
Q 010991 88 FKLWSTIQDDQICRFTSDSK----ERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-M 161 (496)
Q Consensus 88 ~~~~~~~~~~~v~~~~g~~~----~~~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~ 161 (496)
|..|... .+ ..+... ..+ ....+|+|+|++.+......... ...+ ..+.+||+||||++... .
T Consensus 350 f~~f~~~---~v--~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~----~~~~--~~~~lvIiDEAHrs~~~~~ 418 (1038)
T 2w00_A 350 YQRFSPD---SV--NGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD----LPVY--NQQVVFIFDECHRSQFGEA 418 (1038)
T ss_dssp HHTTSTT---CS--SSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC----CGGG--GSCEEEEEESCCTTHHHHH
T ss_pred HHHhccc---cc--ccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc----hhcc--ccccEEEEEccchhcchHH
Confidence 9997532 11 111111 112 24578999999999753211000 0011 36789999999999865 4
Q ss_pred HHHHHHhccCccEEEEeecCCCCccc--hhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcH
Q 010991 162 FRKVISLTKSHCKLGLTATLVREDER--ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (496)
Q Consensus 162 ~~~~l~~l~~~~~L~LTATp~r~d~~--~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~ 239 (496)
++.+...++..++|||||||.+.++. ......++|+.++.++..+++..|++.|+.+.... ..+.+...-. ....
T Consensus 419 ~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~--v~~~~~~~~~-e~d~ 495 (1038)
T 2w00_A 419 QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYND--VRPQFKSLET-ETDE 495 (1038)
T ss_dssp HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECC--CCGGGHHHHT-CCCH
T ss_pred HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEe--ccchhhhccc-cccH
Confidence 66677888888999999999987653 12456788999999999999999999988643322 1111100000 0000
Q ss_pred HHHHH----hhhhCCCcH-HHHHHHHHHhhhc--------CCCeEEEEeccHHHHHHHHHHcC-----------------
Q 010991 240 KKKQA----LYVMNPNKF-RACEFLIRFHEQQ--------RGDKIIVFADNLFALTEYAMKLR----------------- 289 (496)
Q Consensus 240 ~~~~~----l~~~~~~K~-~~l~~ll~~~~~~--------~g~kiIVF~~~~~~~~~l~~~L~----------------- 289 (496)
..... -...++.+. .++..++...... .+.++||||.++.++..+++.|.
T Consensus 496 ~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 496 KKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 00000 011133333 3455566543211 35689999999999999988772
Q ss_pred C-CeEEcC----------C----------CH-----------------------------HHHHHHHHHHhcCCCccEEE
Q 010991 290 K-PMIYGA----------T----------SH-----------------------------VERTKILQAFKCSRDLNTIF 319 (496)
Q Consensus 290 ~-~~i~G~----------~----------~~-----------------------------~eR~~il~~F~~~~~~~vlv 319 (496)
+ .++||+ + ++ .+|..++++|+++ ++++||
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-~i~ILI 654 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-DIDLLI 654 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-SSSEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcC-CCeEEE
Confidence 1 234542 2 22 2488999999998 899999
Q ss_pred Eee--------------ccCCCCChhHHHHHccCcCcCCCC-ccccccCCCCceeEEEEEEEc
Q 010991 320 LSK--------------ISSHAGSRRQEAQRLGRILRAKGK-LEDRMAGGKEEYNAFFYSLVS 367 (496)
Q Consensus 320 ~s~--------------i~~~~~s~~~~~Qr~GR~~R~g~~-~~~~~~~~~~~~~~~vy~lvs 367 (496)
+++ .++.+-+...++|++||++|.+++ |. .+.+++++.
T Consensus 655 vvd~lltGfDiP~l~tlylDkpl~~~~liQaIGRtnR~~~~~K~----------~G~IVdf~~ 707 (1038)
T 2w00_A 655 VVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDATKT----------FGNIVTFRD 707 (1038)
T ss_dssp ESSTTSSSCCCTTEEEEEEESCCCHHHHHHHHHTTCCCCCTTCC----------SEEEEESSC
T ss_pred EcchHHhCcCcccccEEEEccCCCccceeehhhccCcCCCCCCC----------cEEEEEccc
Confidence 998 234445778899999999999863 32 467777775
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=2.1e-28 Score=270.17 Aligned_cols=295 Identities=19% Similarity=0.227 Sum_probs=197.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEE
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (496)
.|+|+|.++++.++.+ +++++++|||+|||+++..++.. .+.+++|++|+++|+.||.++++++... +..++.
T Consensus 25 ~l~~~Q~~~i~~i~~~---~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~-g~~v~~ 100 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSG---KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGI 100 (702)
T ss_dssp CCCCCCHHHHHHHTTC---SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEE
T ss_pred CCCHHHHHHHHHHhCC---CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhc-CCEEEE
Confidence 7999999999986654 49999999999999998665542 3679999999999999999999765433 567888
Q ss_pred EcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhc----cC
Q 010991 102 FTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----KS 171 (496)
Q Consensus 102 ~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l----~~ 171 (496)
++|+.... ....++|+|+|++++.....+.. ..+ .++++||+||+|.+.+. .+..++..+ +.
T Consensus 101 ~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~------~~l--~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~ 172 (702)
T 2p6r_A 101 STGDYESRDEHLGDCDIIVTTSEKADSLIRNRA------SWI--KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (702)
T ss_dssp ECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC------SGG--GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred EeCCCCcchhhccCCCEEEECHHHHHHHHHcCh------hHH--hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcC
Confidence 88875432 12468999999999865432211 112 47899999999998753 344444444 34
Q ss_pred ccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCC
Q 010991 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (496)
Q Consensus 172 ~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~ 251 (496)
.++++||||+.. ..++..+++...+..++. -.+.... +..... . .+. .. ..+ ....-.
T Consensus 173 ~~ii~lSATl~n----~~~~~~~l~~~~~~~~~r-------~~~l~~~-~~~~~~--~--~~~-~~--~~~---~~~~~~ 230 (702)
T 2p6r_A 173 LRVIGLSATAPN----VTEIAEWLDADYYVSDWR-------PVPLVEG-VLCEGT--L--ELF-DG--AFS---TSRRVK 230 (702)
T ss_dssp CEEEEEECCCTT----HHHHHHHTTCEEEECCCC-------SSCEEEE-EECSSE--E--EEE-ET--TEE---EEEECC
T ss_pred ceEEEECCCcCC----HHHHHHHhCCCcccCCCC-------CccceEE-EeeCCe--e--ecc-Cc--chh---hhhhhh
Confidence 688999999864 234444555443322211 0111110 000000 0 000 00 000 000000
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc-----------------------------------CCCeEEcC
Q 010991 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----------------------------------RKPMIYGA 296 (496)
Q Consensus 252 K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L-----------------------------------~~~~i~G~ 296 (496)
+...+..+ + ..+.++||||+++..++.++..| ++.++||+
T Consensus 231 ~~~~~~~~---~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 231 FEELVEEC---V--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp HHHHHHHH---H--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred HHHHHHHH---H--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 12222333 2 35789999999999988887755 36789999
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEee-------------ccC---------CCCChhHHHHHccCcCcCCCCccccccCC
Q 010991 297 TSHVERTKILQAFKCSRDLNTIFLSK-------------ISS---------HAGSRRQEAQRLGRILRAKGKLEDRMAGG 354 (496)
Q Consensus 297 ~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~~---------~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~ 354 (496)
++.++|..+++.|++| .+++||+|. ++. .+.|..++.||+||+||.|.
T Consensus 306 l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~--------- 375 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRG-NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM--------- 375 (702)
T ss_dssp SCHHHHHHHHHHHHTT-SCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT---------
T ss_pred CCHHHHHHHHHHHHCC-CCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC---------
Confidence 9999999999999998 999999998 122 35688999999999999984
Q ss_pred CCceeEEEEEEEcCCC
Q 010991 355 KEEYNAFFYSLVSTDT 370 (496)
Q Consensus 355 ~~~~~~~vy~lvs~~t 370 (496)
+..+.+|.+++.+.
T Consensus 376 --~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 376 --DERGEAIIIVGKRD 389 (702)
T ss_dssp --CSCEEEEEECCGGG
T ss_pred --CCCceEEEEecCcc
Confidence 33467777776554
No 39
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=1e-28 Score=273.31 Aligned_cols=294 Identities=16% Similarity=0.192 Sum_probs=199.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-h---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
.|+|+|.+++..++..+ ++.++++|||+|||+++..++. . .+.+++|++|+++|+.||.++++++... +..++
T Consensus 23 ~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~-g~~v~ 99 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVA 99 (720)
T ss_dssp BCCHHHHHHHTTTGGGT--CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGG-TCCEE
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhc-CCEEE
Confidence 79999999999734443 4999999999999999854443 2 3679999999999999999999766433 45788
Q ss_pred EEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhcc-Ccc
Q 010991 101 RFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SHC 173 (496)
Q Consensus 101 ~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~-~~~ 173 (496)
.++|+.... ..+.++|+|+|++++.....+. ...+ .++++||+||+|.+.+. .+..++..++ ..+
T Consensus 100 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~------~~~l--~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 100 MATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG------SSWI--KDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp EECSCSSCCCGGGGGCSEEEECHHHHHHHHHHT------CTTG--GGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EecCCCCccccccCCCCEEEECHHHHHHHHHcC------hhhh--hcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 888875422 1246889999999986442110 0111 47899999999998753 4555666665 468
Q ss_pred EEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEE-EEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCc
Q 010991 174 KLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE-VWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (496)
Q Consensus 174 ~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~-v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K 252 (496)
+++||||+... .++..+++...+...+ .++.... +..... . .|..... .....+
T Consensus 172 ii~lSATl~n~----~~~~~~l~~~~~~~~~---------rp~~l~~~~~~~~~--~--~~~~~~~--------~~~~~~ 226 (720)
T 2zj8_A 172 IIGLSATIGNP----EELAEWLNAELIVSDW---------RPVKLRRGVFYQGF--V--TWEDGSI--------DRFSSW 226 (720)
T ss_dssp EEEEECCCSCH----HHHHHHTTEEEEECCC---------CSSEEEEEEEETTE--E--EETTSCE--------EECSST
T ss_pred EEEEcCCcCCH----HHHHHHhCCcccCCCC---------CCCcceEEEEeCCe--e--eccccch--------hhhhHH
Confidence 89999998642 3344444443322211 1111111 110000 0 0000000 001223
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC--------------------------------------CCeEE
Q 010991 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------------------------------KPMIY 294 (496)
Q Consensus 253 ~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~--------------------------------------~~~i~ 294 (496)
...+..++ ..+.++||||+++..++.++..|. +.++|
T Consensus 227 ~~~~~~~~-----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 227 EELVYDAI-----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp THHHHHHH-----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHH-----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 33333333 357899999999999988877762 56799
Q ss_pred cCCCHHHHHHHHHHHhcCCCccEEEEee-------------ccC----------CCCChhHHHHHccCcCcCCCCccccc
Q 010991 295 GATSHVERTKILQAFKCSRDLNTIFLSK-------------ISS----------HAGSRRQEAQRLGRILRAKGKLEDRM 351 (496)
Q Consensus 295 G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~~----------~~~s~~~~~Qr~GR~~R~g~~~~~~~ 351 (496)
|+++.++|..+++.|++| .+++||+|. ++. .+.|..++.||+||+||.|.
T Consensus 302 ~~l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~------ 374 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKG-IIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY------ 374 (720)
T ss_dssp TTSCHHHHHHHHHHHHTT-SSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT------
T ss_pred CCCCHHHHHHHHHHHHCC-CCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC------
Confidence 999999999999999998 999999998 222 25688999999999999984
Q ss_pred cCCCCceeEEEEEEEcCCCh
Q 010991 352 AGGKEEYNAFFYSLVSTDTQ 371 (496)
Q Consensus 352 ~~~~~~~~~~vy~lvs~~t~ 371 (496)
+..+.+|.+++.+..
T Consensus 375 -----~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 375 -----DEVGEGIIVSTSDDP 389 (720)
T ss_dssp -----CSEEEEEEECSSSCH
T ss_pred -----CCCceEEEEecCccH
Confidence 335777778776653
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.7e-27 Score=263.46 Aligned_cols=302 Identities=16% Similarity=0.195 Sum_probs=196.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH----hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~----~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
.|+|+|.+++..++..+ ++.++++|||+|||+++..++. ..+.+++|++|+++|+.||.++++++... +..++
T Consensus 30 ~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~-g~~v~ 106 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELI-GFKVA 106 (715)
T ss_dssp BCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGG-TCCEE
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcC-CCEEE
Confidence 89999999999844444 4999999999999999865553 24679999999999999999999765432 45788
Q ss_pred EEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhccCccE
Q 010991 101 RFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSHCK 174 (496)
Q Consensus 101 ~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~~~~~ 174 (496)
..+|+.... .....+|+|+|++++.....+.. ..+ .++++||+||+|.+.+. .+..++..++..++
T Consensus 107 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~------~~l--~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 107 MTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP------EWL--NEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp ECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCC------GGG--GGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCCh------hHh--hccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 888875421 12368899999998865422110 112 57899999999998753 45556666667789
Q ss_pred EEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHH-HHHHHHhhhcHHHHHHhhhhCCCcH
Q 010991 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLKKENSKKKQALYVMNPNKF 253 (496)
Q Consensus 175 L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~-~~~~yl~~~~~~~~~~l~~~~~~K~ 253 (496)
++||||+... .++..+++...+..++. -.+........+.... ....|. .... .......
T Consensus 179 i~lSATl~n~----~~~~~~l~~~~~~~~~r-------~~~l~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~--- 239 (715)
T 2va8_A 179 LALSATISNY----KQIAKWLGAEPVATNWR-------PVPLIEGVIYPERKKKEYNVIFK-DNTT----KKVHGDD--- 239 (715)
T ss_dssp EEEESCCTTH----HHHHHHHTCEEEECCCC-------SSCEEEEEEEECSSTTEEEEEET-TSCE----EEEESSS---
T ss_pred EEEcCCCCCH----HHHHHHhCCCccCCCCC-------CCCceEEEEecCCcccceeeecC-cchh----hhcccch---
Confidence 9999999642 33444444333222110 0111111100000000 000000 0000 0000011
Q ss_pred HHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----------------------------------------CCe
Q 010991 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----------------------------------------KPM 292 (496)
Q Consensus 254 ~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----------------------------------------~~~ 292 (496)
..+..+.+.+ ..+.++||||+++..++.++..|. +.+
T Consensus 240 ~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 240 AIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 1222333333 357899999999999988887762 467
Q ss_pred EEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------cc------C-------CCCChhHHHHHccCcCcCCCC
Q 010991 293 IYGATSHVERTKILQAFKCSRDLNTIFLSK-------------IS------S-------HAGSRRQEAQRLGRILRAKGK 346 (496)
Q Consensus 293 i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~------~-------~~~s~~~~~Qr~GR~~R~g~~ 346 (496)
+||+++.++|..+++.|++| .+++||+|. ++ + .+.|..++.||+||+||.|.
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~- 395 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQR-KIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGF- 395 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTT-CSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTT-
T ss_pred ECCCCCHHHHHHHHHHHHcC-CCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCC-
Confidence 99999999999999999998 999999998 12 2 35688999999999999984
Q ss_pred ccccccCCCCceeEEEEEEEcCCC
Q 010991 347 LEDRMAGGKEEYNAFFYSLVSTDT 370 (496)
Q Consensus 347 ~~~~~~~~~~~~~~~vy~lvs~~t 370 (496)
+..+..|.+++...
T Consensus 396 ----------~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 396 ----------DQIGESIVVVRDKE 409 (715)
T ss_dssp ----------CSCEEEEEECSCGG
T ss_pred ----------CCCceEEEEeCCch
Confidence 23466777776543
No 41
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=4.7e-28 Score=266.90 Aligned_cols=274 Identities=15% Similarity=0.137 Sum_probs=181.3
Q ss_pred CCCCCcHHHHHHHHHHHhc---CCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCC
Q 010991 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~ 95 (496)
..++|+|+|.++++.++.+ +...+.++++|||+|||++++.++... +..++|++|+++|+.||.++|.+|+...
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 3568999999999998764 223488999999999999987776553 6799999999999999999999997544
Q ss_pred CCcEEEEcCCcccc---------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHH
Q 010991 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (496)
Q Consensus 96 ~~~v~~~~g~~~~~---------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (496)
+..+..++|+.... ..+..+|+|+|++.+... +...++++||+||+|++.......+.
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-------------~~~~~l~lVVIDEaHr~g~~qr~~l~ 511 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED-------------VHFKNLGLVIIDEQHRFGVKQREALM 511 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC-------------CCCSCCCEEEEESCCCC-----CCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh-------------hhccCCceEEecccchhhHHHHHHHH
Confidence 56788888885421 134689999999887532 12368999999999998644322122
Q ss_pred HhccCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhh
Q 010991 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (496)
Q Consensus 167 ~~l~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~ 246 (496)
......++|+|||||....-. ..++|..-... ..++ ..+ ..++. ....+
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~----~~~~g~~~~s~-i~~~-p~~-r~~i~--~~~~~---------------------- 560 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMA----LAFYGDLDVTV-IDEM-PPG-RKEVQ--TMLVP---------------------- 560 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHH----HHHTCCSSCEE-ECCC-CSS-CCCCE--ECCCC----------------------
T ss_pred HhCCCCCEEEEeCCCCHHHHH----HHHhCCcceee-eecc-CCC-CcceE--EEEec----------------------
Confidence 222346899999999632111 11122110000 0000 000 00111 11111
Q ss_pred hhCCCcH-HHHHHHHHHhhhcCCCeEEEEeccHH--------HHHHHHHHc--------CCCeEEcCCCHHHHHHHHHHH
Q 010991 247 VMNPNKF-RACEFLIRFHEQQRGDKIIVFADNLF--------ALTEYAMKL--------RKPMIYGATSHVERTKILQAF 309 (496)
Q Consensus 247 ~~~~~K~-~~l~~ll~~~~~~~g~kiIVF~~~~~--------~~~~l~~~L--------~~~~i~G~~~~~eR~~il~~F 309 (496)
..+. .++..+.+.. ..+.+++|||+.++ .++.+++.| ++..+||++++++|.++++.|
T Consensus 561 ---~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F 635 (780)
T 1gm5_A 561 ---MDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEF 635 (780)
T ss_dssp ---SSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHH
T ss_pred ---cchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 1111 2223333333 46889999998653 355555555 356799999999999999999
Q ss_pred hcCCCccEEEEee---------------ccCCC-CChhHHHHHccCcCcCCC
Q 010991 310 KCSRDLNTIFLSK---------------ISSHA-GSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 310 ~~~~~~~vlv~s~---------------i~~~~-~s~~~~~Qr~GR~~R~g~ 345 (496)
++| ++++||+|+ +.+.. .+..++.||+||+||.|.
T Consensus 636 ~~G-~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~ 686 (780)
T 1gm5_A 636 AEG-RYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQ 686 (780)
T ss_dssp TTT-SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSST
T ss_pred HCC-CCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCC
Confidence 998 999999998 22222 367889999999999885
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=3e-25 Score=262.25 Aligned_cols=293 Identities=16% Similarity=0.148 Sum_probs=194.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-------------CCcEEEEEeChHHHHHHHHHHHH
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-------------KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-------------~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
.|.|.|.++++.++..+ .|.++++|||+|||+++..++.. + +.++|+|+|+++|+.|..++|.+
T Consensus 79 ~ln~iQs~~~~~al~~~--~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~ 156 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETD--ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 156 (1724)
T ss_dssp BCCHHHHHTHHHHHTCC--CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC--CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHH
Confidence 58899999999999765 49999999999999998776643 1 24799999999999999999988
Q ss_pred hhCCCCCcEEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHHH
Q 010991 91 WSTIQDDQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKV 165 (496)
Q Consensus 91 ~~~~~~~~v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~ 165 (496)
.++-.+..|+.++|+.... ....++|+||||+.+.....+..+ ...+ ..+++||+||+|.+.+. .+..+
T Consensus 157 ~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~----~~~l--~~v~~vIiDEvH~l~d~RG~~lE~~ 230 (1724)
T 4f92_B 157 RLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGE----RTYT--QLVRLIILDEIHLLHDDRGPVLEAL 230 (1724)
T ss_dssp HHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTT----HHHH--TTEEEEEETTGGGGGSTTHHHHHHH
T ss_pred HHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCcc----chhh--cCcCEEEEecchhcCCccHHHHHHH
Confidence 7665567899999985421 224588999999988665544322 1234 67999999999988753 23333
Q ss_pred HHh-------cc-CccEEEEeecCCCCccchhhhhhhhCcc------ccccCHHHHHhCCCCCcceEEEEEcC---CCHH
Q 010991 166 ISL-------TK-SHCKLGLTATLVREDERITDLNFLIGPK------LYEANWLDLVKGGFIANVQCAEVWCP---MTKE 228 (496)
Q Consensus 166 l~~-------l~-~~~~L~LTATp~r~d~~~~~l~~l~gp~------~~~~~~~~l~~~g~l~~~~~~~v~~~---~~~~ 228 (496)
+.. .. ..+++|||||..... ++..+++.. .+..++ .|+......+. ....
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N~~----dvA~wL~~~~~~~~~~~~~~~---------RPvpL~~~~~~~~~~~~~ 297 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPNYE----DVATFLRVDPAKGLFYFDNSF---------RPVPLEQTYVGITEKKAI 297 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTTHH----HHHHHTTCCHHHHEEECCGGG---------CSSCEEEECCEECCCCHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCCHH----HHHHHhCCCCCCCeEEECCCC---------ccCccEEEEeccCCcchh
Confidence 322 22 237899999986432 232222211 111111 12222221111 1111
Q ss_pred HHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc--------------------
Q 010991 229 FFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------------- 288 (496)
Q Consensus 229 ~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L-------------------- 288 (496)
.....+ ...+...+..+ ..++++||||+++..++.+++.|
T Consensus 298 ~~~~~~------------------~~~~~~~v~~~--~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~ 357 (1724)
T 4f92_B 298 KRFQIM------------------NEIVYEKIMEH--AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAS 357 (1724)
T ss_dssp HHHHHH------------------HHHHHHHHTTC--CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTC
T ss_pred hhhHHH------------------HHHHHHHHHHH--hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhH
Confidence 100000 01122222222 35678999999987766666544
Q ss_pred ----------------------CCCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------cc------CC-
Q 010991 289 ----------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------IS------SH- 326 (496)
Q Consensus 289 ----------------------~~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~------~~- 326 (496)
++.++||+++.++|..+.+.|++| .+++||+|. ++ ++
T Consensus 358 ~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G-~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~ 436 (1724)
T 4f92_B 358 TEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPE 436 (1724)
T ss_dssp SSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT-CCCEEEECHHHHHHSCCCBSEEEEECCEEEETT
T ss_pred HHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC-CCeEEEEcchhHhhCCCCCceEEEeCCEEecCc
Confidence 145689999999999999999999 999999999 11 11
Q ss_pred -----CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCC
Q 010991 327 -----AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 370 (496)
Q Consensus 327 -----~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t 370 (496)
.-++.+|.||+||+||+|.+ ..+.++.+.+.+.
T Consensus 437 ~~~~~~ls~~~~~Qm~GRAGR~g~d-----------~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 437 KGRWTELGALDILQMLGRAGRPQYD-----------TKGEGILITSHGE 474 (1724)
T ss_dssp TTEEEECCHHHHHHHHTTBSCTTTC-----------SCEEEEEEEESTT
T ss_pred CCCcccCCHHHHHHhhhhccCCCCC-----------CccEEEEEecchh
Confidence 13788999999999999953 2355555565543
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=9.4e-25 Score=249.61 Aligned_cols=240 Identities=18% Similarity=0.155 Sum_probs=164.5
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 22 ~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
..++|+|+|.++++.++.+. +.++++|||+|||++++.++.. .+.++|||+|+++|+.|+.+.|.++. ..+..
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~---dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~ 150 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVK 150 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTC---CEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSC
T ss_pred cCCCCCHHHHHHHHHHHcCC---CEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCe
Confidence 35689999999999988764 8999999999999987776654 45689999999999999999999975 44567
Q ss_pred EEEEcCCccc--------cc-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---------
Q 010991 99 ICRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------- 160 (496)
Q Consensus 99 v~~~~g~~~~--------~~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--------- 160 (496)
+..++|+... .+ .+.++|+|+|++.|... +..+...++++||+||||++...
T Consensus 151 v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~----------l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 151 IFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp EEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHS----------HHHHHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHH----------HHhhcccCcCEEEEeCCCccccccccchhhhH
Confidence 8888887643 12 24589999999999644 23355579999999999987631
Q ss_pred ------H-HHHHHHhcc------------CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEE
Q 010991 161 ------M-FRKVISLTK------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV 221 (496)
Q Consensus 161 ------~-~~~~l~~l~------------~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v 221 (496)
. ...++..++ ..+.+++||||....-....+...++..+... ...........+
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~-------~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL-------VSVARNITHVRI 293 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBC-------CCCCCCEEEEEE
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccC-------CCCcCCceeEEE
Confidence 1 445555553 34789999996432221111111111100000 001111111111
Q ss_pred EcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CC-eEEc
Q 010991 222 WCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KP-MIYG 295 (496)
Q Consensus 222 ~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~-~i~G 295 (496)
.+ .|...+..++... +.++||||+++..++.++..|. +. .+||
T Consensus 294 ~~---------------------------~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg 342 (1104)
T 4ddu_A 294 SS---------------------------RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE 342 (1104)
T ss_dssp SC---------------------------CCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS
T ss_pred ec---------------------------CHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC
Confidence 11 2223444455432 5799999999999999999983 44 6788
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 296 ATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 296 ~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
. |.+ ++.|++| ++++||+
T Consensus 343 ~-----rr~-l~~F~~G-~~~VLVa 360 (1104)
T 4ddu_A 343 F-----EKN-FEDFKVG-KINILIG 360 (1104)
T ss_dssp H-----HHH-HHHHHHT-SCSEEEE
T ss_pred c-----HHH-HHHHHCC-CCCEEEE
Confidence 2 555 9999998 9999999
No 44
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.93 E-value=3.1e-25 Score=212.33 Aligned_cols=155 Identities=28% Similarity=0.489 Sum_probs=127.7
Q ss_pred CCCCCcc-ccCCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHH
Q 010991 12 VNPDLNM-ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 12 ~~~~~~~-~l~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..+..++ .+.+.+.|+|||.+++..++.++ ++++++|||+|||++++.++...+.++||+||+++|+.||.+++.+
T Consensus 79 ~~~~~~~p~~~~~~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 79 AADPIPTPYFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp SCCCCCCCCCCCCCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGG
T ss_pred ccccCCCccccCCCCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 3445556 67788899999999999888764 7999999999999999999999899999999999999999999998
Q ss_pred hhCCCCCc-EEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc
Q 010991 91 WSTIQDDQ-ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (496)
Q Consensus 91 ~~~~~~~~-v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l 169 (496)
| + .. +..++|+... ..+|+|+||+.+... ...+ ...|++||+||||++.+..|+.++..+
T Consensus 156 ~-~---~~~v~~~~g~~~~----~~~i~v~T~~~l~~~----------~~~~-~~~~~llIiDEaH~l~~~~~~~i~~~~ 216 (237)
T 2fz4_A 156 F-G---EEYVGEFSGRIKE----LKPLTVSTYDSAYVN----------AEKL-GNRFMLLIFDEVHHLPAESYVQIAQMS 216 (237)
T ss_dssp G-C---GGGEEEESSSCBC----CCSEEEEEHHHHHHT----------HHHH-TTTCSEEEEECSSCCCTTTHHHHHHTC
T ss_pred C-C---CCeEEEEeCCCCC----cCCEEEEeHHHHHhh----------HHHh-cccCCEEEEECCccCCChHHHHHHHhc
Confidence 4 3 35 8888887654 478999999988643 2233 257999999999999999999999999
Q ss_pred cCccEEEEeecCCCCccch
Q 010991 170 KSHCKLGLTATLVREDERI 188 (496)
Q Consensus 170 ~~~~~L~LTATp~r~d~~~ 188 (496)
+..++|+|||||.|.|+..
T Consensus 217 ~~~~~l~LSATp~r~D~~~ 235 (237)
T 2fz4_A 217 IAPFRLGLTATFEREDGRH 235 (237)
T ss_dssp CCSEEEEEEESCC------
T ss_pred cCCEEEEEecCCCCCCCCC
Confidence 9999999999999998864
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=3.5e-24 Score=253.20 Aligned_cols=283 Identities=15% Similarity=0.217 Sum_probs=187.4
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHHHHHHhhC-CCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST-IQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~-~~~~~ 98 (496)
.+.|.|.++++.++..+ .+.++++|||+|||+++..++... +.++|+|+|+++|+.|..++|.+.++ ..+.+
T Consensus 926 ~fnpiQ~q~~~~l~~~~--~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~ 1003 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSD--DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1003 (1724)
T ss_dssp BCCHHHHHHHHHHHSCC--SCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCE
Confidence 47899999999998766 489999999999999986665432 46899999999999998888876443 34567
Q ss_pred EEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHHHHHhc----
Q 010991 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT---- 169 (496)
Q Consensus 99 v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~l---- 169 (496)
|+.++|+.... ....++|+|+||+.+.....+.... ..+ .++++||+||+|.+.+. .+..++..+
T Consensus 1004 V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~----~~l--~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~ 1077 (1724)
T 4f92_B 1004 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR----KNV--QNINLFVVDEVHLIGGENGPVLEVICSRMRYIS 1077 (1724)
T ss_dssp EEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTC----HHH--HSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccc----ccc--ceeeEEEeechhhcCCCCCccHHHHHHHHHHHH
Confidence 88899985532 1245789999999876543332111 233 57899999999998753 344344333
Q ss_pred ---c-CccEEEEeecCCCCccchhhhhhhhCcc---c--cccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHH
Q 010991 170 ---K-SHCKLGLTATLVREDERITDLNFLIGPK---L--YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (496)
Q Consensus 170 ---~-~~~~L~LTATp~r~d~~~~~l~~l~gp~---~--~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~ 240 (496)
. ..+.++||||..... ++...++.. . +..++. -.+........+..... ....
T Consensus 1078 ~~~~~~~riI~lSATl~N~~----dla~WL~~~~~~~~~~~~~~R-------PvpL~~~i~~~~~~~~~-~~~~------ 1139 (1724)
T 4f92_B 1078 SQIERPIRIVALSSSLSNAK----DVAHWLGCSATSTFNFHPNVR-------PVPLELHIQGFNISHTQ-TRLL------ 1139 (1724)
T ss_dssp HTTSSCCEEEEEESCBTTHH----HHHHHHTCCSTTEEECCGGGC-------SSCEEEEEEEECCCSHH-HHHH------
T ss_pred hhcCCCceEEEEeCCCCCHH----HHHHHhCCCCCCeEEeCCCCC-------CCCeEEEEEeccCCCch-hhhh------
Confidence 2 247899999986433 233333311 1 111110 01111111111211110 0000
Q ss_pred HHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHc--------------------------------
Q 010991 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------------------------- 288 (496)
Q Consensus 241 ~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L-------------------------------- 288 (496)
.+ ...+...+..+ ..+.++||||.++..++.++..|
T Consensus 1140 ------~~----~~~~~~~i~~~--~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~ 1207 (1724)
T 4f92_B 1140 ------SM----AKPVYHAITKH--SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDST 1207 (1724)
T ss_dssp ------TT----HHHHHHHHHHH--CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHH
T ss_pred ------hh----cchHHHHHHHh--cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHH
Confidence 00 01122333333 46789999999999888776544
Q ss_pred -------CCCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------------ccCC------------CCChhHHHHH
Q 010991 289 -------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------------ISSH------------AGSRRQEAQR 336 (496)
Q Consensus 289 -------~~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------------i~~~------------~~s~~~~~Qr 336 (496)
++.++||++++.+|..+.+.|++| .+++||+|. ++.. +-+..+|.|+
T Consensus 1208 L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G-~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm 1286 (1724)
T 4f92_B 1208 LKETLLNGVGYLHEGLSPMERRLVEQLFSSG-AIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQM 1286 (1724)
T ss_dssp HHHHHHTTEEEECTTSCHHHHHHHHHHHHHT-SBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHH
T ss_pred HHHHHhCCEEEECCCCCHHHHHHHHHHHHCC-CCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHh
Confidence 256799999999999999999999 999999999 1110 1377899999
Q ss_pred ccCcCcCCCC
Q 010991 337 LGRILRAKGK 346 (496)
Q Consensus 337 ~GR~~R~g~~ 346 (496)
+||+||+|..
T Consensus 1287 ~GRAGR~g~d 1296 (1724)
T 4f92_B 1287 VGHANRPLQD 1296 (1724)
T ss_dssp HTTBCCTTTC
T ss_pred hccccCCCCC
Confidence 9999999953
No 46
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.92 E-value=8.5e-25 Score=214.74 Aligned_cols=162 Identities=23% Similarity=0.308 Sum_probs=132.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
++|+|||.+++..++.++ +++|++|||+|||++++.++... ..++|||||+++|+.||.++|.+|...+...+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred cCccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 589999999999988875 78999999999999987776542 34899999999999999999999976555567
Q ss_pred EEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhc-cCccEEE
Q 010991 100 CRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLG 176 (496)
Q Consensus 100 ~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l-~~~~~L~ 176 (496)
..+.++.... .....+|+|+||+.+..... .. ..++++||+||||++.++.++.++..+ ...++|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~---------~~--~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK---------EW--FSQFGMMMNDECHLATGKSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTTCCCTTCSEEEECHHHHTTSCG---------GG--GGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchhhhccCCcEEEEchHHHHhhHH---------HH--HhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEE
Confidence 7666664321 12568899999999865421 11 257899999999999999999898887 5679999
Q ss_pred EeecCCCCccchhhhhhhhCccc
Q 010991 177 LTATLVREDERITDLNFLIGPKL 199 (496)
Q Consensus 177 LTATp~r~d~~~~~l~~l~gp~~ 199 (496)
|||||.+.++....++.++||..
T Consensus 258 lSATp~~~~~~~~~l~~l~g~i~ 280 (282)
T 1rif_A 258 LSGSLRDGKANIMQYVGMFGEIF 280 (282)
T ss_dssp ECSSCCTTSTTHHHHHHHHCEEE
T ss_pred EeCCCCCcchHHHHHHHhcCCcc
Confidence 99999998888888889999864
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.91 E-value=1.9e-23 Score=238.80 Aligned_cols=239 Identities=14% Similarity=0.165 Sum_probs=164.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCC--
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDD-- 97 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~-- 97 (496)
.+.+ |+|.++++.++.+. +.++++|||+|||+.++.++... +.++|||+|+++|+.|+.+.|.+++...+.
T Consensus 55 g~~p-~iQ~~ai~~il~g~---dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~ 130 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILRKE---SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGT 130 (1054)
T ss_dssp CSCC-HHHHHHHHHHHTTC---CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSG
T ss_pred CCCH-HHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCc
Confidence 4558 99999999988764 89999999999998666665543 568999999999999999999998754445
Q ss_pred --cEEEEcCCcccc--------ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc--hHHHHH
Q 010991 98 --QICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKV 165 (496)
Q Consensus 98 --~v~~~~g~~~~~--------~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~~ 165 (496)
.++.++|+.... +.. ++|+|+|++.|.....+ + ..+++||+||||++.+ ..++.+
T Consensus 131 ~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----------L--~~l~~lViDEah~~l~~~~~~~~i 197 (1054)
T 1gku_B 131 ENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----------L--GHFDFIFVDDVDAILKASKNVDKL 197 (1054)
T ss_dssp GGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----------S--CCCSEEEESCHHHHHTSTHHHHHH
T ss_pred cceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----------h--ccCCEEEEeChhhhhhccccHHHH
Confidence 688888875421 233 89999999999866442 2 4889999999999886 466667
Q ss_pred HHhcc------------CccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHH
Q 010991 166 ISLTK------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY 233 (496)
Q Consensus 166 l~~l~------------~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~y 233 (496)
+..+. ....+++|||+.........+.. .+...... ..............
T Consensus 198 ~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~--~~~~i~v~------~~~~~~~~i~~~~~---------- 259 (1054)
T 1gku_B 198 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFR--QLLNFDIG------SSRITVRNVEDVAV---------- 259 (1054)
T ss_dssp HHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHH--HHHCCCCS------CCEECCCCEEEEEE----------
T ss_pred HHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhh--cceEEEcc------CcccCcCCceEEEe----------
Confidence 66653 23568899998765222111110 01000000 00000001111111
Q ss_pred HhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC----CCeEEcCCCHHHHHHHHHHH
Q 010991 234 LKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPMIYGATSHVERTKILQAF 309 (496)
Q Consensus 234 l~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~----~~~i~G~~~~~eR~~il~~F 309 (496)
...|...+..++.. .+.++||||+++..++.+++.|. +..+||++ .++++.|
T Consensus 260 ---------------~~~k~~~L~~ll~~----~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F 315 (1054)
T 1gku_B 260 ---------------NDESISTLSSILEK----LGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKF 315 (1054)
T ss_dssp ---------------SCCCTTTTHHHHTT----SCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHH
T ss_pred ---------------chhHHHHHHHHHhh----cCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHH
Confidence 12233344455532 25789999999999999999986 45689987 3788999
Q ss_pred hcCCCccEEEEe
Q 010991 310 KCSRDLNTIFLS 321 (496)
Q Consensus 310 ~~~~~~~vlv~s 321 (496)
++| ++++||+|
T Consensus 316 ~~G-~~~VLVaT 326 (1054)
T 1gku_B 316 VEG-EIDHLIGT 326 (1054)
T ss_dssp HHT-SCSEEEEE
T ss_pred HcC-CCcEEEEe
Confidence 998 99999993
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.89 E-value=6.1e-23 Score=213.49 Aligned_cols=232 Identities=17% Similarity=0.147 Sum_probs=146.7
Q ss_pred cceEEEeCCCCChHHHHHHHHH----hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~----~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiIt 119 (496)
++.++++|||+|||++++.++. ..+.++||++|+++|+.|+.+.|.. ..+...++...........+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~ 76 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG------EPIRYMTPAVQSERTGNEIVDFM 76 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT------SCEEEC---------CCCSEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC------CeEEEEecCccccCCCCceEEEE
Confidence 5899999999999999755443 3456899999999999999887752 24665555433222233456677
Q ss_pred chHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--HHHHHHHhc---cCccEEEEeecCCCCccchhhhhhh
Q 010991 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLT---KSHCKLGLTATLVREDERITDLNFL 194 (496)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~l---~~~~~L~LTATp~r~d~~~~~l~~l 194 (496)
|.+.+... +.......++++||+||+|++... ..+..+..+ ...+.|+|||||...... +
T Consensus 77 ~~~~l~~~---------l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~------~ 141 (431)
T 2v6i_A 77 CHSTFTMK---------LLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA------F 141 (431)
T ss_dssp EHHHHHHH---------HHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS------S
T ss_pred chHHHHHH---------HhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh------h
Confidence 77766321 112211368899999999999421 222233322 246889999999853221 0
Q ss_pred hCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEE
Q 010991 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (496)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF 274 (496)
.. + -.+. ..+....+.. ....++..+ . ..+.++|||
T Consensus 142 ~~--------------~-~~~i--~~~~~~~~~~----------------------~~~~~~~~l----~-~~~~~~lVF 177 (431)
T 2v6i_A 142 PP--------------S-NSPI--IDEETRIPDK----------------------AWNSGYEWI----T-EFDGRTVWF 177 (431)
T ss_dssp CC--------------C-SSCC--EEEECCCCSS----------------------CCSSCCHHH----H-SCSSCEEEE
T ss_pred cC--------------C-CCce--eeccccCCHH----------------------HHHHHHHHH----H-cCCCCEEEE
Confidence 00 0 0011 1111111000 000011111 1 235689999
Q ss_pred eccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEeec------cC------------------
Q 010991 275 ADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKI------SS------------------ 325 (496)
Q Consensus 275 ~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~i------~~------------------ 325 (496)
|+++..++.+++.|. +..+||+ +|.++++.|++| ++++||+|++ +.
T Consensus 178 ~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~ 252 (431)
T 2v6i_A 178 VHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWDFVITTDISEMGANFKADRVIDPRKTIKPILLDG 252 (431)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETT
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCeEEEECchHHcCcccCCcEEEecCccccceeccc
Confidence 999999999999983 6678987 688999999998 9999999991 00
Q ss_pred -------CCCChhHHHHHccCcCcCCC
Q 010991 326 -------HAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 326 -------~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.+.+..+|.||+||+||.|+
T Consensus 253 ~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 253 RVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ceeecccccCCHHHHHHhhhccCCCCC
Confidence 12378899999999999985
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.88 E-value=3.9e-23 Score=215.46 Aligned_cols=230 Identities=17% Similarity=0.138 Sum_probs=134.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiIt 119 (496)
++.++++|||+|||++++.++.. .+..+||++|+++|+.|+.+.|..+ .+....+... .++
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~---------~v~ 73 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS---------AHG 73 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC---------CCC
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce---------ecc
Confidence 58999999999999997554432 3458999999999999999988753 2332222211 244
Q ss_pred chHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch------HHHHHHHhccCccEEEEeecCCCCccchhhhhh
Q 010991 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKSHCKLGLTATLVREDERITDLNF 193 (496)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~~~l~~l~~~~~L~LTATp~r~d~~~~~l~~ 193 (496)
|++.+........-...+.....-.++++||+||+|++ +. .+...+..-...+.+++||||.......
T Consensus 74 Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~----- 147 (440)
T 1yks_A 74 SGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEF----- 147 (440)
T ss_dssp CSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS-----
T ss_pred CCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhh-----
Confidence 44443322211000000001111268899999999999 32 2221111123468899999997543210
Q ss_pred hhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEE
Q 010991 194 LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIV 273 (496)
Q Consensus 194 l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIV 273 (496)
..+ ..+. ..+...... ..+...+..+. ..+.++||
T Consensus 148 -~~~---------------~~~~--~~~~~~~~~----------------------~~~~~~~~~l~-----~~~~~~lV 182 (440)
T 1yks_A 148 -PHS---------------NGEI--EDVQTDIPS----------------------EPWNTGHDWIL-----ADKRPTAW 182 (440)
T ss_dssp -CCC---------------SSCE--EEEECCCCS----------------------SCCSSSCHHHH-----HCCSCEEE
T ss_pred -hhc---------------CCCe--eEeeeccCh----------------------HHHHHHHHHHH-----hcCCCEEE
Confidence 000 0011 111111110 00001122232 23679999
Q ss_pred EeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEeec-------------------------
Q 010991 274 FADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKI------------------------- 323 (496)
Q Consensus 274 F~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~i------------------------- 323 (496)
||+++..++.+++.|. +..+|| ++|.++++.|++| ++++||+|++
T Consensus 183 F~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~vLVaT~v~e~GiDipv~~VI~~g~~~~pv~~~ 257 (440)
T 1yks_A 183 FLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDFILATDIAEMGANLCVERVLDCRTAFKPVLVD 257 (440)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEET
T ss_pred EeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceEEEECChhheeeccCceEEEeCCccceeeecc
Confidence 9999999999999983 567899 4788999999998 9999999991
Q ss_pred --------cCCCCChhHHHHHccCcCcCC
Q 010991 324 --------SSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 324 --------~~~~~s~~~~~Qr~GR~~R~g 344 (496)
...+.++.+|.||+||+||.|
T Consensus 258 ~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 258 EGRKVAIKGPLRISASSAAQRRGRIGRNP 286 (440)
T ss_dssp TTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred cccceeeccccccCHHHHHHhccccCCCC
Confidence 122467889999999999985
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.88 E-value=8.8e-23 Score=213.98 Aligned_cols=237 Identities=18% Similarity=0.139 Sum_probs=148.7
Q ss_pred HHhcCCCcceEEEeCCCCChHHHHHHHHH-h---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccC
Q 010991 37 MFGNGRARSGIIVLPCGAGKSLVGVSAAC-R---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG 112 (496)
Q Consensus 37 ~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~ 112 (496)
++..+ ++.++++|||+|||++++.++. . .+.++||++|+++|+.|+.+++..+ .+....+.....-..
T Consensus 17 ~l~~~--~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~~~~t~ 88 (459)
T 2z83_A 17 MLRKR--QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAVQREHQG 88 (459)
T ss_dssp GGSTT--CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS------CEEECC--------C
T ss_pred HHhcC--CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc------eEeEEecccccCCCC
Confidence 45444 4899999999999999544443 2 3568999999999999999988632 233222221111112
Q ss_pred CCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC-----chHHHHHHHhccCccEEEEeecCCCCccc
Q 010991 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-----AHMFRKVISLTKSHCKLGLTATLVREDER 187 (496)
Q Consensus 113 ~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-----~~~~~~~l~~l~~~~~L~LTATp~r~d~~ 187 (496)
...+.+.|.+.+.... .....-.++++||+||||++. ...|...+...+..++++|||||......
T Consensus 89 ~~~i~~~~~~~l~~~l---------~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~ 159 (459)
T 2z83_A 89 NEIVDVMCHATLTHRL---------MSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDP 159 (459)
T ss_dssp CCSEEEEEHHHHHHHH---------HSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS
T ss_pred CcEEEEEchHHHHHHh---------hccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhh
Confidence 3446677776654221 111112688999999999953 33444333334567899999999743221
Q ss_pred hhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcC
Q 010991 188 ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQR 267 (496)
Q Consensus 188 ~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~ 267 (496)
. .. . -.+... +....+... ...+ +.. +. ..
T Consensus 160 ~------~~--------------~-~~pi~~--~~~~~~~~~-------------------~~~~---~~~-l~----~~ 189 (459)
T 2z83_A 160 F------PD--------------S-NAPIHD--LQDEIPDRA-------------------WSSG---YEW-IT----EY 189 (459)
T ss_dssp S------CC--------------C-SSCEEE--EECCCCSSC-------------------CSSC---CHH-HH----HC
T ss_pred h------cc--------------C-CCCeEE--ecccCCcch-------------------hHHH---HHH-HH----hc
Confidence 0 00 0 011111 111111000 0001 111 11 23
Q ss_pred CCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------c------------
Q 010991 268 GDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------I------------ 323 (496)
Q Consensus 268 g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------i------------ 323 (496)
+.++||||+++..++.+++.|. +..+||+ +|.++++.|++| ++++||+|+ +
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~iLVaT~v~~~GiDip~~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDFVITTDISEMGANFGASRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSEEEESSCC---CCCSCSEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceEEEECChHHhCeecCCCEEEECCccc
Confidence 6799999999999999999984 5568884 788999999998 999999999 1
Q ss_pred ---------------cCCCCChhHHHHHccCcCcCCC
Q 010991 324 ---------------SSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 324 ---------------~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.+.+.|+.+|+||+||+||.|.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~ 301 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN 301 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCC
Confidence 2255688999999999999984
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.88 E-value=6.7e-23 Score=214.49 Aligned_cols=247 Identities=20% Similarity=0.151 Sum_probs=155.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH-H---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-C---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~-~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
++.|.|+ +++.++.++ ...++++|||+|||++++.++ . ..+.++||++|+++|+.|+.++|..+ .+.
T Consensus 4 q~~~iq~-~i~~~l~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~ 74 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL------PIR 74 (451)
T ss_dssp CCSCCCC-CCGGGGSTT--CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE
T ss_pred CCCCcHH-HHHHHHhcC--CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc------eee
Confidence 3455664 677777665 355888999999999754443 2 23568999999999999999988532 233
Q ss_pred EEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHH---HHH---hccCccE
Q 010991 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK---VIS---LTKSHCK 174 (496)
Q Consensus 101 ~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~---~l~---~l~~~~~ 174 (496)
...+...........|.++|++.+.... .....-.++++||+||||++ +..+.. .+. ..+..++
T Consensus 75 ~~~~~~~~~~~~~~~i~~~t~~~l~~~l---------~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 75 YQTPAVKSDHTGREIVDLMCHATFTTRL---------LSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp ECCTTCSCCCCSSCCEEEEEHHHHHHHH---------HHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeccccccCCCCceEEEEChHHHHHHh---------hCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 2222221122334568889998875331 11111258899999999988 332221 111 1234578
Q ss_pred EEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHH
Q 010991 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (496)
Q Consensus 175 L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~ 254 (496)
++|||||...... .+.+ ......+....+.. .|. .+
T Consensus 145 i~~SAT~~~~~~~-----~~~~------------------~~~~~~~~~~~p~~---~~~----------------~~-- 180 (451)
T 2jlq_A 145 IFMTATPPGSTDP-----FPQS------------------NSPIEDIEREIPER---SWN----------------TG-- 180 (451)
T ss_dssp EEECSSCTTCCCS-----SCCC------------------SSCEEEEECCCCSS---CCS----------------SS--
T ss_pred EEEccCCCccchh-----hhcC------------------CCceEecCccCCch---hhH----------------HH--
Confidence 9999999642221 0110 00011111111100 000 00
Q ss_pred HHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEeec------
Q 010991 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKI------ 323 (496)
Q Consensus 255 ~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~i------ 323 (496)
+..+. ..+.++||||+++..++.+++.|. +..+||++. .++++.|++| ++++||+|++
T Consensus 181 -~~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g-~~~vLVaT~v~~~GiD 249 (451)
T 2jlq_A 181 -FDWIT-----DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLT-DWDFVVTTDISEMGAN 249 (451)
T ss_dssp -CHHHH-----HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSS-CCSEEEECGGGGSSCC
T ss_pred -HHHHH-----hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccC-CceEEEECCHHHhCcC
Confidence 11111 235689999999999999999994 456888654 5799999998 9999999991
Q ss_pred --------cC--------------------CCCChhHHHHHccCcCcCCC
Q 010991 324 --------SS--------------------HAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 324 --------~~--------------------~~~s~~~~~Qr~GR~~R~g~ 345 (496)
++ .+.|..+|+||+||+||.|.
T Consensus 250 ip~~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 250 FRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 01 44678899999999999995
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.88 E-value=1.1e-21 Score=217.14 Aligned_cols=272 Identities=15% Similarity=0.207 Sum_probs=174.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh--c----CCcEEEEEeChHHHHHHHHHHHHhhCCCCC-
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR--I----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD- 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~--~----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~- 97 (496)
.+.+.|++++..++.++ ...+|++|||+|||.+.-.++.. . +..++|++|+++|+.|+.+.+....+....
T Consensus 93 lP~~~q~~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~ 170 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGE 170 (773)
T ss_dssp SGGGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTT
T ss_pred CChHHHHHHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhh
Confidence 45667888888888775 47999999999999953222222 1 345999999999999999888776544321
Q ss_pred cEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcc-cCch-----HHHHHHHhccC
Q 010991 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAH-----MFRKVISLTKS 171 (496)
Q Consensus 98 ~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~-~~~~-----~~~~~l~~l~~ 171 (496)
.++ +............+|+++|++++.... .....-.++++||+||+|. ..+. ....+....+.
T Consensus 171 ~vG-~~i~~~~~~~~~~~I~v~T~G~l~r~l---------~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 171 EVG-YSIRFENKTSNKTILKYMTDGMLLREA---------MEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp TEE-EEETTEEECCTTCSEEEEEHHHHHHHH---------HHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred eec-ceeccccccCCCCCEEEECHHHHHHHH---------hhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 222 111111112346789999999886431 1111236889999999995 4442 22333333345
Q ss_pred ccEEEEeecCCCCccchhhhhhhhC-ccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCC
Q 010991 172 HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (496)
Q Consensus 172 ~~~L~LTATp~r~d~~~~~l~~l~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~ 250 (496)
...+++|||+.. ..+..+++ +.++.. .|-..++.. .+.+.... .|.
T Consensus 241 ~~iIl~SAT~~~-----~~l~~~~~~~~vi~v-------~gr~~pv~~--~~~~~~~~---~~~---------------- 287 (773)
T 2xau_A 241 LKIIIMSATLDA-----EKFQRYFNDAPLLAV-------PGRTYPVEL--YYTPEFQR---DYL---------------- 287 (773)
T ss_dssp CEEEEEESCSCC-----HHHHHHTTSCCEEEC-------CCCCCCEEE--ECCSSCCS---CHH----------------
T ss_pred ceEEEEeccccH-----HHHHHHhcCCCcccc-------cCcccceEE--EEecCCch---hHH----------------
Confidence 578999999931 22333333 222211 122223222 22221110 011
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC----------------CCeEEcCCCHHHHHHHHHHHh----
Q 010991 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----------------KPMIYGATSHVERTKILQAFK---- 310 (496)
Q Consensus 251 ~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~----------------~~~i~G~~~~~eR~~il~~F~---- 310 (496)
..++..++..+....+.++||||+++..++.+++.|. +..+||++++++|.++++.|.
T Consensus 288 --~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 288 --DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp --HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred --HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 0233344444432357899999999999999888763 456999999999999999999
Q ss_pred -cCCCccEEEEee-------------ccC--C------------------CCChhHHHHHccCcCcCC
Q 010991 311 -CSRDLNTIFLSK-------------ISS--H------------------AGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 311 -~~~~~~vlv~s~-------------i~~--~------------------~~s~~~~~Qr~GR~~R~g 344 (496)
+| ..++||+|. ++. . +.|..+|.||+||+||.+
T Consensus 366 ~~g-~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~ 432 (773)
T 2xau_A 366 GRP-GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 432 (773)
T ss_dssp SSC-CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSS
T ss_pred CCC-ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCC
Confidence 87 899999998 111 1 568999999999999985
No 53
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.87 E-value=1.9e-22 Score=217.99 Aligned_cols=245 Identities=18% Similarity=0.139 Sum_probs=156.1
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHH-HHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEE
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG-VSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~-i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (496)
..|.|..+++.++.+ ++.++++|||+|||+++ +.++.. .+.++||++|+++|+.|+.++|... .+.
T Consensus 172 ~lpiq~~~i~~l~~g---~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~------~v~- 241 (618)
T 2whx_A 172 GEPDYEVDEDIFRKK---RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL------PIR- 241 (618)
T ss_dssp CCCCCCCCGGGGSTT---CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE-
T ss_pred CCCccccCHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC------cee-
Confidence 344555566644444 49999999999999985 434432 3568999999999999999888632 343
Q ss_pred EcCCc-cccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HHHHHhc--cCccE
Q 010991 102 FTSDS-KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISLT--KSHCK 174 (496)
Q Consensus 102 ~~g~~-~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~l~~l--~~~~~ 174 (496)
+.+.. .........+.+.|.+.+... ........++++||+||||++ +..| ..++..+ ...+.
T Consensus 242 ~~~~~l~~~~tp~~~i~~~t~~~l~~~---------l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~ 311 (618)
T 2whx_A 242 YQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 311 (618)
T ss_dssp ECCTTSSCCCCSSSCEEEEEHHHHHHH---------HHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEE
T ss_pred EecccceeccCCCceEEEEChHHHHHH---------HhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccE
Confidence 33322 111123345777787766432 111111268999999999999 4333 3333333 34578
Q ss_pred EEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHH
Q 010991 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (496)
Q Consensus 175 L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~ 254 (496)
++|||||...... +.. .+.....+......+ ....
T Consensus 312 il~SAT~~~~~~~------~~~-----------------~~~~~~~v~~~~~~~----------------------~~~~ 346 (618)
T 2whx_A 312 IFMTATPPGSTDP------FPQ-----------------SNSPIEDIEREIPER----------------------SWNT 346 (618)
T ss_dssp EEECSSCTTCCCS------SCC-----------------CSSCEEEEECCCCSS----------------------CCSS
T ss_pred EEEECCCchhhhh------hhc-----------------cCCceeeecccCCHH----------------------HHHH
Confidence 9999999754221 000 011111111111100 0001
Q ss_pred HHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-------
Q 010991 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK------- 322 (496)
Q Consensus 255 ~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~------- 322 (496)
++..+. ..+.++||||+++..++.+++.|. +..+||+ +|.++++.|++| ++++||+|+
T Consensus 347 ll~~l~-----~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~VLVaTdv~~rGiD 416 (618)
T 2whx_A 347 GFDWIT-----DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWDFVVTTDISEMGAN 416 (618)
T ss_dssp SCHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCSEEEECGGGGTTCC
T ss_pred HHHHHH-----hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcEEEEECcHHHcCcc
Confidence 122332 236699999999999999999994 5678884 788999999998 999999999
Q ss_pred c-cC--------------------------CCCChhHHHHHccCcCcCCC
Q 010991 323 I-SS--------------------------HAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 i-~~--------------------------~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+ +. .+.|..+|+||+||+||.|.
T Consensus 417 i~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 417 FRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp CCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred cCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC
Confidence 1 00 13577899999999999974
No 54
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.87 E-value=7.1e-23 Score=220.31 Aligned_cols=255 Identities=18% Similarity=0.127 Sum_probs=167.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
.++++|++.+.. +.++ +++++++|||+|||.++..++...+.++||++|+++|+.|+.+.+.+..+. .+....|
T Consensus 217 P~~~~q~~i~~~-L~~~--~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~---~vg~~vG 290 (666)
T 3o8b_A 217 PVFTDNSSPPAV-PQSF--QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGI---DPNIRTG 290 (666)
T ss_dssp CSCCCCCSCCCC-CSSC--EEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECS
T ss_pred CcHHHHHHHHHH-HHcC--CeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCC---CeeEEEC
Confidence 445566555553 3333 488999999999999988777777779999999999999999998887654 3556666
Q ss_pred CccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHHHHHhccCc---cEEEEe
Q 010991 105 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLTKSH---CKLGLT 178 (496)
Q Consensus 105 ~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~l~~~---~~L~LT 178 (496)
+.. .....+|+|+|++.|.... .+...++++|||||||.+... .+..++..++.. ..+++|
T Consensus 291 ~~~--~~~~~~IlV~TPGrLl~~~-----------~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~S 357 (666)
T 3o8b_A 291 VRT--ITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLAT 357 (666)
T ss_dssp SCE--ECCCCSEEEEEHHHHHHTT-----------SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred cEe--ccCCCCEEEECcHHHHhCC-----------CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEEC
Confidence 643 3556889999999985331 122357999999999877543 244455555433 367789
Q ss_pred ecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHH
Q 010991 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEF 258 (496)
Q Consensus 179 ATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ 258 (496)
|||...... ..|. ...+........ .+. ..+..
T Consensus 358 AT~~~~i~~-------~~p~-------------------i~~v~~~~~~~i--~~~---------------~~~~~---- 390 (666)
T 3o8b_A 358 ATPPGSVTV-------PHPN-------------------IEEVALSNTGEI--PFY---------------GKAIP---- 390 (666)
T ss_dssp SSCTTCCCC-------CCTT-------------------EEEEECBSCSSE--EET---------------TEEEC----
T ss_pred CCCCccccc-------CCcc-------------------eEEEeecccchh--HHH---------------Hhhhh----
Confidence 999752110 0011 111111100000 000 00000
Q ss_pred HHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-----------
Q 010991 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------- 322 (496)
Q Consensus 259 ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~----------- 322 (496)
++ . ..+.++||||+++..++.+++.|. +..+||++++++ |.++ ..++||+|+
T Consensus 391 -l~--~-~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~-~~~VLVATdVaerGIDIdV~ 458 (666)
T 3o8b_A 391 -IE--A-IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTI-GDVVVVATDALMTGYTGDFD 458 (666)
T ss_dssp -GG--G-SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSS-SCEEEEECTTHHHHCCCCBS
T ss_pred -hh--h-ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhC-CCcEEEECChHHccCCCCCc
Confidence 00 1 347899999999999999999984 567999999875 4454 558888888
Q ss_pred --c-----------cC-----------CCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChH
Q 010991 323 --I-----------SS-----------HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 372 (496)
Q Consensus 323 --i-----------~~-----------~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e 372 (496)
+ ++ .+.|..+|+||+||+|| +. .| . |.|++.+..+
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~----------~G---~-i~lvt~~e~~ 517 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GR----------RG---I-YRFVTPGERP 517 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SS----------CE---E-EEESCCCCBC
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CC----------CC---E-EEEEecchhh
Confidence 1 01 24467899999999999 63 33 3 6777765433
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.87 E-value=3.8e-22 Score=216.77 Aligned_cols=245 Identities=12% Similarity=0.070 Sum_probs=165.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccccc---CCCcEEEEc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR---GNAGVVVTT 120 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~---~~~~IiItT 120 (496)
++.++++|||+|||..++..+... +..+|++|+++|+.|+.+++... + ..+..++|+...... ...+++++|
T Consensus 156 k~vlv~apTGSGKT~~al~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~-g---~~v~lltG~~~~iv~TpGr~~~il~~T 230 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYFSA-KSGVYCGPLKLLAHEIFEKSNAA-G---VPCDLVTGEERVTVQPNGKQASHVSCT 230 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-SSEEEEESSHHHHHHHHHHHHHT-T---CCEEEECSSCEECCSTTCCCCSEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc-CCeEEEeCHHHHHHHHHHHHHhc-C---CcEEEEECCeeEEecCCCcccceeEec
Confidence 588999999999999777766655 45699999999999999999885 3 368888888664322 236799999
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHHHHhccC--ccEEEEeecCCCCccchhhhhhh
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKS--HCKLGLTATLVREDERITDLNFL 194 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~l~~--~~~L~LTATp~r~d~~~~~l~~l 194 (496)
++++... ..+++||+||||++.+. .+..++..+.. .+.+++|||.. ....+...
T Consensus 231 ~e~~~l~----------------~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~----~i~~l~~~ 290 (677)
T 3rc3_A 231 VEMCSVT----------------TPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID----LVMELMYT 290 (677)
T ss_dssp GGGCCSS----------------SCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH----HHHHHHHH
T ss_pred HhHhhhc----------------ccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH----HHHHHHHh
Confidence 8776421 57899999999999765 44556665552 36788899931 22222222
Q ss_pred hCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEE
Q 010991 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (496)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF 274 (496)
.+..+.-.. .....+... . .. .+..+ . .-....|||
T Consensus 291 ~~~~~~v~~------~~r~~~l~~---~---------------------------~~---~l~~l-~----~~~~g~iIf 326 (677)
T 3rc3_A 291 TGEEVEVRD------YKRLTPISV---L---------------------------DH---ALESL-D----NLRPGDCIV 326 (677)
T ss_dssp HTCCEEEEE------CCCSSCEEE---C---------------------------SS---CCCSG-G----GCCTTEEEE
T ss_pred cCCceEEEE------eeecchHHH---H---------------------------HH---HHHHH-H----hcCCCCEEE
Confidence 221110000 000000000 0 00 00000 0 112234888
Q ss_pred eccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhc--CCCccEEEEee--------------ccCC-------
Q 010991 275 ADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKC--SRDLNTIFLSK--------------ISSH------- 326 (496)
Q Consensus 275 ~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~--~~~~~vlv~s~--------------i~~~------- 326 (496)
|.++..++.+++.|. +..+||++++++|.++++.|++ | .+++||+|+ ..+.
T Consensus 327 ~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~ 405 (677)
T 3rc3_A 327 CFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNLSIRRIIFYSLIKPSINE 405 (677)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCCCBSEEEESCSBC-----
T ss_pred EcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCcCccEEEECCcccccccc
Confidence 999999999999983 7889999999999999999998 6 799999999 1122
Q ss_pred -------CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcC
Q 010991 327 -------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 368 (496)
Q Consensus 327 -------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~ 368 (496)
+.|..+|.||+||+||.|. .+..+.+|.+...
T Consensus 406 ~G~~~~~p~s~~~~~QR~GRAGR~g~----------~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 406 KGERELEPITTSQALQIAGRAGRFSS----------RFKEGEVTTMNHE 444 (677)
T ss_dssp ------CBCCHHHHHHHHTTBTCTTS----------SCSSEEEEESSTT
T ss_pred CCccccccCCHHHHHHHhcCCCCCCC----------CCCCEEEEEEecc
Confidence 4578999999999999995 2224566666443
No 56
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.87 E-value=6.3e-23 Score=223.35 Aligned_cols=248 Identities=16% Similarity=0.156 Sum_probs=150.8
Q ss_pred CCcHHHH-----HHHHHHH-----hcCCCcceEEEeCCCCChHHHHHHHHH----hcCCcEEEEEeChHHHHHHHHHHHH
Q 010991 25 QPRPYQE-----KSLSKMF-----GNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 25 ~lr~yQ~-----~al~~~~-----~~~~~~~~il~~~tG~GKTl~~i~~~~----~~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
.+.|.|+ ++++.++ ..+ ++.++++|||+|||++++.++. ..+.++|||+|+++|+.|+.+.|..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g--~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKR--QLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTT--CEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 5677788 8887665 122 4999999999999999654443 2356899999999999999998876
Q ss_pred hhCCCCCcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch---HHHHHHH
Q 010991 91 WSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVIS 167 (496)
Q Consensus 91 ~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~ 167 (496)
+. +....+..........-+.+.+...+.. .++....-.++++||+||||++... ....+..
T Consensus 293 ~~------i~~~~~~l~~v~tp~~ll~~l~~~~l~~---------~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~ 357 (673)
T 2wv9_A 293 LP------VRYLTPAVQREHSGNEIVDVMCHATLTH---------RLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIAT 357 (673)
T ss_dssp SC------CEECCC---CCCCSCCCEEEEEHHHHHH---------HHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHH
T ss_pred CC------eeeecccccccCCHHHHHHHHHhhhhHH---------HHhcccccccceEEEEeCCcccCccHHHHHHHHHH
Confidence 41 2211111110001112233334333321 1111111268899999999999321 1111112
Q ss_pred hc--cCccEEEEeecCCCCccchhhhhhhhCccccccCHHHHHhCCCCCcceEEEEEcCCCHHHHHHHHhhhcHHHHHHh
Q 010991 168 LT--KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (496)
Q Consensus 168 ~l--~~~~~L~LTATp~r~d~~~~~l~~l~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~yl~~~~~~~~~~l 245 (496)
.+ ...+.|+|||||...... +.. + -.+ ...+....+.
T Consensus 358 ~~~~~~~~vl~~SAT~~~~i~~------~~~--------------~-~~~--i~~v~~~~~~------------------ 396 (673)
T 2wv9_A 358 RVEAGEAAAIFMTATPPGTSDP------FPD--------------T-NSP--VHDVSSEIPD------------------ 396 (673)
T ss_dssp HHHTTSCEEEEECSSCTTCCCS------SCC--------------C-SSC--EEEEECCCCS------------------
T ss_pred hccccCCcEEEEcCCCChhhhh------hcc--------------c-CCc--eEEEeeecCH------------------
Confidence 22 346889999999743221 000 0 001 1111111110
Q ss_pred hhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEE
Q 010991 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (496)
Q Consensus 246 ~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~ 320 (496)
..+...+..+. ..+.++||||+++..++.+++.|. +..+||+ +|.++++.|++| ++++||+
T Consensus 397 ----~~~~~~l~~l~-----~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~VLVa 462 (673)
T 2wv9_A 397 ----RAWSSGFEWIT-----DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDFVIT 462 (673)
T ss_dssp ----SCCSSCCHHHH-----SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSEEEE
T ss_pred ----HHHHHHHHHHH-----hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceEEEE
Confidence 00001122222 357899999999999999999993 5678993 899999999998 9999999
Q ss_pred ee-------------c---------------------cCCCCChhHHHHHccCcCcCC
Q 010991 321 SK-------------I---------------------SSHAGSRRQEAQRLGRILRAK 344 (496)
Q Consensus 321 s~-------------i---------------------~~~~~s~~~~~Qr~GR~~R~g 344 (496)
|+ + .+.+.++.+|.||+||+||.+
T Consensus 463 Tdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~ 520 (673)
T 2wv9_A 463 TDISEMGANFGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP 520 (673)
T ss_dssp CGGGGTTCCCCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS
T ss_pred CchhhcceeeCCcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC
Confidence 99 1 123457789999999999984
No 57
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.86 E-value=5.9e-22 Score=215.28 Aligned_cols=307 Identities=17% Similarity=0.123 Sum_probs=177.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-h--cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R--IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~--~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.+.++|.|..++..++.+ . |..++||+|||+++..++. . .+..++||+||+.|+.|..+++..+....+..+
T Consensus 81 G~~pt~VQ~~~ip~ll~G----~-Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDG----N-IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp SCCCCHHHHHHHHHHHTT----S-EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCcHHHHHhhHHHhCC----C-EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 458899999999977654 3 8899999999999766654 2 356899999999999986666665544345578
Q ss_pred EEEcCCcccc---ccCCCcEEEEchHHhh-----cccCCChhHHHHHHHHhcCCccEEEEcCCcccC-ch----------
Q 010991 100 CRFTSDSKER---FRGNAGVVVTTYNMVA-----FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AH---------- 160 (496)
Q Consensus 100 ~~~~g~~~~~---~~~~~~IiItT~~~l~-----~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~~---------- 160 (496)
+++.|+.... ....++|+++|++.|. ...... ...+..+.+.++|+||||++. +.
T Consensus 156 ~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~------~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~ 229 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLY------KEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQ 229 (844)
T ss_dssp EECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSS------GGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEE
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcc------hhhhcccCCCEEEECchhhhhhhccccchhhcCC
Confidence 8877774321 1234789999999883 221100 011223678899999999986 22
Q ss_pred ---------HHHHHHHhccC----------ccEE-----------------EEeecCCCCccchh-hh------------
Q 010991 161 ---------MFRKVISLTKS----------HCKL-----------------GLTATLVREDERIT-DL------------ 191 (496)
Q Consensus 161 ---------~~~~~l~~l~~----------~~~L-----------------~LTATp~r~d~~~~-~l------------ 191 (496)
...+++..++. +..+ ++|||.......+. .|
T Consensus 230 ~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dY 309 (844)
T 1tf5_A 230 AAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDY 309 (844)
T ss_dssp EECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTE
T ss_pred cccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCce
Confidence 23345555542 1222 44565321000000 00
Q ss_pred ----------hhhhCccccccCH----HHHH--hCCC-CCcce--EEEEE-----------cCCC-------HHHHHHHH
Q 010991 192 ----------NFLIGPKLYEANW----LDLV--KGGF-IANVQ--CAEVW-----------CPMT-------KEFFSEYL 234 (496)
Q Consensus 192 ----------~~l~gp~~~~~~~----~~l~--~~g~-l~~~~--~~~v~-----------~~~~-------~~~~~~yl 234 (496)
..+.|.......| .+++ +.+. +.+.. ...+. +.|+ .++..-|-
T Consensus 310 iv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~ 389 (844)
T 1tf5_A 310 VVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYN 389 (844)
T ss_dssp EEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred EEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhC
Confidence 0001111111111 1111 0111 11110 11111 0011 11111110
Q ss_pred hhhc---HHHH--------HHhhhhCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCC
Q 010991 235 KKEN---SKKK--------QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATS 298 (496)
Q Consensus 235 ~~~~---~~~~--------~~l~~~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~ 298 (496)
... +..+ ..++.....|+.++..++.... ..+.++||||.++..++.++..|. +..+||++.
T Consensus 390 -l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~ 467 (844)
T 1tf5_A 390 -MQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH 467 (844)
T ss_dssp -CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH
T ss_pred -CceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCcc
Confidence 000 0000 0111112346666666664321 357789999999999999999994 567999999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEee-------c----------------cCCCCChhHHHHHccCcCcCCC
Q 010991 299 HVERTKILQAFKCSRDLNTIFLSK-------I----------------SSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 299 ~~eR~~il~~F~~~~~~~vlv~s~-------i----------------~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
+.+|..+.+.|+.+ .|+|+|+ | ...+.|++.|.||.||+||.|.
T Consensus 468 ~rEr~ii~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~ 534 (844)
T 1tf5_A 468 EREAQIIEEAGQKG---AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGD 534 (844)
T ss_dssp HHHHHHHTTTTSTT---CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGC
T ss_pred HHHHHHHHHcCCCC---eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCC
Confidence 88887776677665 6888888 1 2345799999999999999985
No 58
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=181.37 Aligned_cols=154 Identities=21% Similarity=0.329 Sum_probs=106.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeChHHHHH-HHHHHHH
Q 010991 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQ-WAFQFKL 90 (496)
Q Consensus 21 ~~~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~~L~~Q-w~~e~~~ 90 (496)
.+.++|+|||.+++..++.+. ++++++|||+|||++++.++... ..++||+||+++|+.| |.+++.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~---~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGK---NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCC---CEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 456799999999999988764 89999999999999988877643 5689999999999999 9999999
Q ss_pred hhCCCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch-HHHH
Q 010991 91 WSTIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRK 164 (496)
Q Consensus 91 ~~~~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~ 164 (496)
|... ...+..+.|+.... ....++|+|+||+.+.....+..... ...+....+++||+||||++.+. .+..
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~--~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE--DAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC---------CCCGGGCSEEEETTC-------CHHH
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCccc--ccccchhcccEEEEECchhhccCCcHHH
Confidence 8653 45677777765421 12347899999999875533211000 00011257899999999999865 4554
Q ss_pred HHHhc------------------cCccEEEEeec
Q 010991 165 VISLT------------------KSHCKLGLTAT 180 (496)
Q Consensus 165 ~l~~l------------------~~~~~L~LTAT 180 (496)
++..+ +..++|+||||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 44333 34579999998
No 59
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=4.8e-21 Score=180.64 Aligned_cols=149 Identities=16% Similarity=0.189 Sum_probs=112.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCC-CCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI-QDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~~ 97 (496)
.|+|||.++++.++.+. ++++++|||+|||++++.++... ..++||+||+++|+.||.+++.++... +..
T Consensus 36 ~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 112 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 112 (220)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCc
Confidence 49999999999988764 89999999999999987777653 238999999999999999999998643 356
Q ss_pred cEEEEcCCcccc-----c-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-hHHHH----HH
Q 010991 98 QICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRK----VI 166 (496)
Q Consensus 98 ~v~~~~g~~~~~-----~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~----~l 166 (496)
.+..+.|+.... + .+.++|+|+|++.+.....+. .+....++++|+||||++.+ ..|.. ++
T Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~ 184 (220)
T 1t6n_A 113 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184 (220)
T ss_dssp CEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--------SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred eEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC--------CCCcccCCEEEEcCHHHHhcccCcHHHHHHHH
Confidence 788888875421 1 234689999999886542221 11236789999999999975 34443 33
Q ss_pred Hhcc-CccEEEEeecCCCC
Q 010991 167 SLTK-SHCKLGLTATLVRE 184 (496)
Q Consensus 167 ~~l~-~~~~L~LTATp~r~ 184 (496)
..++ ..++++|||||...
T Consensus 185 ~~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 185 RMTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp HTSCSSSEEEEEESCCCTT
T ss_pred HhCCCcCeEEEEEeecCHH
Confidence 3343 35789999999754
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=4.2e-21 Score=178.96 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=111.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----CCcEEEEEeChHHHHHHHHHHHHhhCC-CCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~~ 97 (496)
.|+|||.++++.++.+. ++++++|||+|||++++.++.. . ..++||+||+++|+.||.+.+.++... +..
T Consensus 25 ~~~~~Q~~~i~~~~~~~---~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 101 (206)
T 1vec_A 25 KPSPIQEESIPIALSGR---DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA 101 (206)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSC
T ss_pred CCCHHHHHHHHHHccCC---CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCc
Confidence 79999999999888764 8999999999999987766543 2 237999999999999999999998643 256
Q ss_pred cEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH----HHHHh
Q 010991 98 QICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISL 168 (496)
Q Consensus 98 ~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~~ 168 (496)
.+..+.|+... .....++|+|+|++.+.....+. .+....++++|+||||++.+..|. .++..
T Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 102 KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--------VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp CEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--------CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred eEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC--------CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHh
Confidence 77777777542 13456889999999986442211 111257899999999998876544 44444
Q ss_pred cc-CccEEEEeecCC
Q 010991 169 TK-SHCKLGLTATLV 182 (496)
Q Consensus 169 l~-~~~~L~LTATp~ 182 (496)
++ ..+++++|||+.
T Consensus 174 ~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 174 LPKNRQILLYSATFP 188 (206)
T ss_dssp SCTTCEEEEEESCCC
T ss_pred CCccceEEEEEeeCC
Confidence 44 457899999996
No 61
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.84 E-value=5.4e-21 Score=207.26 Aligned_cols=126 Identities=17% Similarity=0.037 Sum_probs=89.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...++|.|..++..++.+ . |..++||+|||+++..++.. .+..++||+||+.|+.|..+.+..++...+..+
T Consensus 72 g~~p~~VQ~~~i~~ll~G----~-Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v 146 (853)
T 2fsf_A 72 GMRHFDVQLLGGMVLNER----C-IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTV 146 (853)
T ss_dssp SCCCCHHHHHHHHHHHSS----E-EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCChHHHhhcccccCC----e-eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 357899999999976644 3 88999999999997665542 356899999999999997777766654445678
Q ss_pred EEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHH----HHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKII----EEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~----~~l~~~~~~~vIlDEaH~~~ 158 (496)
+++.|+.... ....++|+|+|++.|..+.-| +.+ ..+..+.+.++|+||||++.
T Consensus 147 ~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLr-----d~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 147 GINLPGMPAPAKREAYAADITYGTNNEYGFDYLR-----DNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHH-----HTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHH-----hhhhccHhHhcccCCcEEEECchHHHH
Confidence 8887774321 123478999999987311000 000 11223688999999999987
No 62
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.83 E-value=7.6e-21 Score=177.24 Aligned_cols=147 Identities=19% Similarity=0.126 Sum_probs=109.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c--------CCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~--------~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
..|+|||.++++.++.+. ++++++|||+|||++++.++.. + +.++||+||+++|+.||.+++.+++.
T Consensus 22 ~~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~- 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGK---DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP- 97 (207)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT-
T ss_pred CCCCHHHHHHHHHHcCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh-
Confidence 379999999999888764 8999999999999996665543 2 34799999999999999999999853
Q ss_pred CCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHH----HH
Q 010991 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KV 165 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~ 165 (496)
...+..+.|+.... +...++|+|+|++.+.....+ ..+....+++||+||||++.+..|. .+
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~~~~i 168 (207)
T 2gxq_A 98 -HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEAL 168 (207)
T ss_dssp -TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--------TSSCCTTCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred -cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--------CCcchhhceEEEEEChhHhhccchHHHHHHH
Confidence 35677777764321 224578999999988644211 1122367899999999998765443 34
Q ss_pred HHhcc-CccEEEEeecCCC
Q 010991 166 ISLTK-SHCKLGLTATLVR 183 (496)
Q Consensus 166 l~~l~-~~~~L~LTATp~r 183 (496)
+..++ ..+++++|||+..
T Consensus 169 ~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 169 LSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HHTSCTTSEEEEECSSCCH
T ss_pred HHhCCccCeEEEEEEecCH
Confidence 44443 3478999999963
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=178.51 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=111.6
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----------cCCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----------IKKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----------~~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
..|+|||.++++.++.+. ++++++|||+|||++++.++.. .+.++||+||+++|+.||.+++.++..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGK---DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp CBCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 379999999999888764 8999999999999997665542 245799999999999999999999875
Q ss_pred CCCCcEEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HHHHH
Q 010991 94 IQDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKV 165 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~ 165 (496)
..+..+..+.|+.... ....++|+|+||+.+.....+. ..+...++++||+||||++.+. .+..+
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 195 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-------VSFHATDLQMLVLDEADRILDMGFADTMNAV 195 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-------SSCCCTTCCEEEETTHHHHHHTTTHHHHHHH
T ss_pred CCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-------CCcccccccEEEEeChHHHhcCCcHHHHHHH
Confidence 5556788888775421 1246789999999986432110 0122257899999999998754 34555
Q ss_pred HHhccC-ccEEEEeecCCC
Q 010991 166 ISLTKS-HCKLGLTATLVR 183 (496)
Q Consensus 166 l~~l~~-~~~L~LTATp~r 183 (496)
+..++. .++++||||+..
T Consensus 196 ~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 196 IENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp HHTSCTTSEEEEEESSCCH
T ss_pred HHhCCCCCeEEEEEeeCCH
Confidence 555653 468999999863
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.83 E-value=5.8e-21 Score=180.06 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=111.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCC--
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-- 95 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~-- 95 (496)
..|+|||.++++.++.+. ++++++|||+|||++++.++... +.++||+||+++|+.||.+++.++....
T Consensus 25 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGE---SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 479999999999988774 89999999999999976665442 3479999999999999999999987543
Q ss_pred --CCcEEEEcCCccc-----cccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH----HHH
Q 010991 96 --DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRK 164 (496)
Q Consensus 96 --~~~v~~~~g~~~~-----~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~ 164 (496)
...+..+.|+... .+...++|+|+|++.+.....+. .+....++++|+||||++.+.. ...
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~~~~~~~~~~l~~ 173 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--------ALDVHTAHILVVDEADLMLDMGFITDVDQ 173 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--------CCCGGGCCEEEECSHHHHHHTTCHHHHHH
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC--------CCCcCcceEEEEcCchHHhhhChHHHHHH
Confidence 4566777776432 13346789999999886442211 1112568899999999988654 344
Q ss_pred HHHhcc-CccEEEEeecCCC
Q 010991 165 VISLTK-SHCKLGLTATLVR 183 (496)
Q Consensus 165 ~l~~l~-~~~~L~LTATp~r 183 (496)
++..++ ..++++||||+..
T Consensus 174 i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 174 IAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHHTSCTTCEEEEEESCCCG
T ss_pred HHHhCCcccEEEEEecCCCH
Confidence 555554 3468999999854
No 65
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.83 E-value=3.1e-20 Score=179.05 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=110.8
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---------------CCcEEEEEeChHHHHHHHHHHH
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------------KKSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---------------~~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
.|+|||.++++.++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.+++.
T Consensus 45 ~~~~~Q~~~i~~i~~~~---~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 121 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHR---DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQ 121 (253)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHH
Confidence 69999999999888764 89999999999999976665431 2489999999999999999999
Q ss_pred HhhCCCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH---
Q 010991 90 LWSTIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--- 161 (496)
Q Consensus 90 ~~~~~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~--- 161 (496)
++.......+..+.|+.... +...++|+|+|++.+.....+. .+....+++||+||||++.+..
T Consensus 122 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~~~~~~~~~ 193 (253)
T 1wrb_A 122 KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--------KISLEFCKYIVLDEADRMLDMGFEP 193 (253)
T ss_dssp HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--------SBCCTTCCEEEEETHHHHHHTTCHH
T ss_pred HHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--------CCChhhCCEEEEeCHHHHHhCchHH
Confidence 98755556677777764421 2356899999999986542221 1112567899999999987543
Q ss_pred -HHHHHHhc--c---CccEEEEeecCCC
Q 010991 162 -FRKVISLT--K---SHCKLGLTATLVR 183 (496)
Q Consensus 162 -~~~~l~~l--~---~~~~L~LTATp~r 183 (496)
+..++..+ . ..++++|||||..
T Consensus 194 ~~~~i~~~~~~~~~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 194 QIRKIIEESNMPSGINRQTLMFSATFPK 221 (253)
T ss_dssp HHHHHHHSSCCCCGGGCEEEEEESSCCH
T ss_pred HHHHHHhhccCCCCCCcEEEEEEEeCCH
Confidence 44455532 2 2368999999964
No 66
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.83 E-value=8.4e-21 Score=182.86 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=112.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
..|+|||.++++.++.+. ++++++|||+|||++++.++... +.++||++|+++|+.||.+++.+++...+.
T Consensus 64 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGR---DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 379999999999888764 89999999999999976655432 346999999999999999999998654456
Q ss_pred cEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HHHHHh
Q 010991 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISL 168 (496)
Q Consensus 98 ~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~l~~ 168 (496)
.+..+.|+.... +...++|+|+|++++.....+. ..+....+++||+||||++.+..| ..++..
T Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-------~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT-------KGFNLRALKYLVMDEADRILNMDFETEVDKILKV 213 (249)
T ss_dssp CEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-------TTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHS
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-------CCcCccccCEEEEcChhhhhccChHHHHHHHHHh
Confidence 777777764421 2356899999999986442110 011225789999999999887544 445555
Q ss_pred cc-CccEEEEeecCCC
Q 010991 169 TK-SHCKLGLTATLVR 183 (496)
Q Consensus 169 l~-~~~~L~LTATp~r 183 (496)
++ ..++++||||+..
T Consensus 214 ~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 214 IPRDRKTFLFSATMTK 229 (249)
T ss_dssp SCSSSEEEEEESSCCH
T ss_pred CCCCCeEEEEeccCCH
Confidence 54 4578999999964
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.83 E-value=1.1e-20 Score=178.64 Aligned_cols=149 Identities=18% Similarity=0.122 Sum_probs=108.6
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH-Hhc-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~-~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
..|+|||.++++.++.+. ++++++|||+|||++++.++ ..+ ..++||++|+++|+.||.+++.++....+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~~---~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCcHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 379999999999888764 89999999999999955444 433 348999999999999999999998755566
Q ss_pred cEEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH----HHHHHHhc
Q 010991 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLT 169 (496)
Q Consensus 98 ~v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~l 169 (496)
.+..+.|+.... ....++|+|+|++.+.....+. .+....+++||+||||++.+.. +..++..+
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~--------~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--------RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHHHTT--------SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC--------CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC
Confidence 777777764421 1123789999999986442211 1112578999999999987653 34444544
Q ss_pred cC-ccEEEEeecCCC
Q 010991 170 KS-HCKLGLTATLVR 183 (496)
Q Consensus 170 ~~-~~~L~LTATp~r 183 (496)
+. .++++||||+..
T Consensus 184 ~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 184 PPTTQVVLLSATMPN 198 (224)
T ss_dssp CTTCEEEEEESSCCH
T ss_pred CccCeEEEEEeecCH
Confidence 33 468999999963
No 68
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=176.65 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=109.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh------------cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------------IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~------------~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+|+|+|.++++.++.+. ++++++|||+|||++++.++.. .+.++||++|+++|+.||.+++.++
T Consensus 41 ~~~~~~Q~~~i~~~~~~~---~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 379999999999888764 8999999999999997666543 3457999999999999999999998
Q ss_pred hCCCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch----HH
Q 010991 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MF 162 (496)
Q Consensus 92 ~~~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~ 162 (496)
. .....+..+.|+.... +...++|+|+|++.+.....+. .+...++++||+||||++.+. .+
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~--------~~~~~~~~~lViDEah~~~~~~~~~~~ 188 (228)
T 3iuy_A 118 S-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN--------SVNLRSITYLVIDEADKMLDMEFEPQI 188 (228)
T ss_dssp C-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT--------CCCCTTCCEEEECCHHHHHHTTCHHHH
T ss_pred c-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CcCcccceEEEEECHHHHhccchHHHH
Confidence 5 3455666666654321 2356799999999986542211 111257899999999998865 34
Q ss_pred HHHHHhccC-ccEEEEeecCCC
Q 010991 163 RKVISLTKS-HCKLGLTATLVR 183 (496)
Q Consensus 163 ~~~l~~l~~-~~~L~LTATp~r 183 (496)
..++..++. .+.+++|||+..
T Consensus 189 ~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 189 RKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp HHHHHHSCSSCEEEEEESCCCH
T ss_pred HHHHHhCCcCCeEEEEEeeCCH
Confidence 555555543 478999999853
No 69
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.82 E-value=4.2e-20 Score=175.60 Aligned_cols=147 Identities=17% Similarity=0.081 Sum_probs=109.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH-Hhc-----CCcEEEEEeChHHHHHHHHHHHHhhC-CCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-----KKSCLCLATNAVSVDQWAFQFKLWST-IQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~-~~~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~-~~~~ 97 (496)
.|+|||.++++.++.+. ++++++|||+|||++++.++ ..+ +.++||+||+++|+.||.+++.++.. .+..
T Consensus 46 ~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 122 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGL---DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGL 122 (230)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCc
Confidence 49999999999888764 89999999999999965544 433 34899999999999999999999863 2356
Q ss_pred cEEEEcCCcccc----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH-H----HHHHHh
Q 010991 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-F----RKVISL 168 (496)
Q Consensus 98 ~v~~~~g~~~~~----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~-~----~~~l~~ 168 (496)
.+..+.|+.... ....++|+|+|++.+.....+. .+...+++++|+||||++.+.. | ..++..
T Consensus 123 ~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~--------~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~ 194 (230)
T 2oxc_A 123 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD--------YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS 194 (230)
T ss_dssp CEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTT--------SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcC--------CcccccCCEEEeCCchHhhcCcchHHHHHHHHHh
Confidence 788888875421 1245789999999986542211 1112468899999999996543 4 345555
Q ss_pred cc-CccEEEEeecCC
Q 010991 169 TK-SHCKLGLTATLV 182 (496)
Q Consensus 169 l~-~~~~L~LTATp~ 182 (496)
++ ..++++||||+.
T Consensus 195 ~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 195 LPASKQMLAVSATYP 209 (230)
T ss_dssp SCSSCEEEEEESCCC
T ss_pred CCCCCeEEEEEeccC
Confidence 55 446899999985
No 70
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.82 E-value=6e-20 Score=199.42 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=87.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH--h-cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC--R-IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~--~-~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...++|.|..++..++.+ . |..++||+|||+++..++. . .+..++||+||..|+.|-.+.+..+...-+..+
T Consensus 109 G~rP~~VQ~~~ip~Ll~G----~-Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv 183 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLG----N-VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQV 183 (922)
T ss_dssp SCCCCHHHHHHHHHHHTT----E-EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHhHhcC----C-EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 458899999999976643 3 8899999999999665553 2 356899999999999875555554433334578
Q ss_pred EEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHH----HHHhcCCccEEEEcCCcccC
Q 010991 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKII----EEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~----~~l~~~~~~~vIlDEaH~~~ 158 (496)
+++.|+.... ....++|+++|++.|..+.-| +.+ +.+..+.+.++|+||||++.
T Consensus 184 ~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLr-----D~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 184 GVILATMTPDERRVAYNADITYGTNNEFGFDYLR-----DNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHH-----HTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHH-----hhhhccHhhhccCCCCEEEEeChHHHH
Confidence 8877774321 122478999999887321000 000 12223678999999999986
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=181.82 Aligned_cols=150 Identities=17% Similarity=0.128 Sum_probs=112.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----------cCCcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----------IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----------~~~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
.|+|+|.++++.++.+. ++++++|||+|||++++.++.. .+.++|||+|+++|+.||.+++++++..
T Consensus 76 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 152 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGR---DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH 152 (262)
T ss_dssp BCCHHHHHHHHHHHHTC---CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhCCC---cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 39999999999988874 8999999999999997666543 2457999999999999999999998765
Q ss_pred CCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HHH
Q 010991 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKV 165 (496)
Q Consensus 95 ~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~ 165 (496)
....+..+.|+.... +..+.+|+|+|++.+.....+. ..+...++++||+||||++.+..| ..+
T Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-------~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 225 (262)
T 3ly5_A 153 HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-------PGFMYKNLQCLVIDEADRILDVGFEEELKQI 225 (262)
T ss_dssp CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC-------TTCCCTTCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc-------CCcccccCCEEEEcChHHHhhhhHHHHHHHH
Confidence 556777777765421 2245789999999886432111 011225689999999999886544 445
Q ss_pred HHhccC-ccEEEEeecCCCC
Q 010991 166 ISLTKS-HCKLGLTATLVRE 184 (496)
Q Consensus 166 l~~l~~-~~~L~LTATp~r~ 184 (496)
+..++. .++++||||+.+.
T Consensus 226 ~~~~~~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 226 IKLLPTRRQTMLFSATQTRK 245 (262)
T ss_dssp HHHSCSSSEEEEECSSCCHH
T ss_pred HHhCCCCCeEEEEEecCCHH
Confidence 555543 4689999999743
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.82 E-value=2e-20 Score=179.25 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=111.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-----------cCCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-----------IKKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-----------~~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
.|+|+|.++++.++.+. ++++++|||+|||++++.++.. .+..+|||||+++|+.||.+.+.++..
T Consensus 51 ~~~~~Q~~~i~~~~~g~---~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 127 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 127 (242)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHh
Confidence 59999999999988764 8999999999999997666543 134799999999999999999999865
Q ss_pred CCCCcEEEEcCCcccc-----ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHH----HH
Q 010991 94 IQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RK 164 (496)
Q Consensus 94 ~~~~~v~~~~g~~~~~-----~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~ 164 (496)
..+..+..+.|+.... +...++|+|+|++.+.....+. .+...++++||+||||++.+..| ..
T Consensus 128 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~l~~~~~~~~~~~ 199 (242)
T 3fe2_A 128 ACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--------KTNLRRTTYLVLDEADRMLDMGFEPQIRK 199 (242)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT--------SCCCTTCCEEEETTHHHHHHTTCHHHHHH
T ss_pred hcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CCCcccccEEEEeCHHHHhhhCcHHHHHH
Confidence 5556777777764421 2345789999999986442211 11225788999999999886544 44
Q ss_pred HHHhccC-ccEEEEeecCCC
Q 010991 165 VISLTKS-HCKLGLTATLVR 183 (496)
Q Consensus 165 ~l~~l~~-~~~L~LTATp~r 183 (496)
++..++. .+++++|||+..
T Consensus 200 i~~~~~~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 200 IVDQIRPDRQTLMWSATWPK 219 (242)
T ss_dssp HHTTSCSSCEEEEEESCCCH
T ss_pred HHHhCCccceEEEEEeecCH
Confidence 4555533 468999999853
No 73
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.81 E-value=3.1e-20 Score=177.40 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=107.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c-----CCcEEEEEeChHHHHHHHHHHHHhhCCCCCc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~-----~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (496)
.|+|||.++++.++.+. ++++++|||+|||++++.++.. + +.++||++|+++|+.||.+++.+++......
T Consensus 52 ~~~~~Q~~ai~~i~~~~---~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 128 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGY---DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT 128 (237)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCce
Confidence 49999999999888764 8999999999999997666544 2 3489999999999999999999987554556
Q ss_pred EEEEcCCcccc-----c-cCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchH----HHHHHHh
Q 010991 99 ICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISL 168 (496)
Q Consensus 99 v~~~~g~~~~~-----~-~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~ 168 (496)
+..+.|+.... + .+.++|+|+||+.+.....+. .+....+++||+||||++.+.. ...++..
T Consensus 129 ~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 200 (237)
T 3bor_A 129 CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR--------YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK 200 (237)
T ss_dssp EEEECC-------------CCCSEEEECHHHHHHHHHTT--------SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC--------CcCcccCcEEEECCchHhhccCcHHHHHHHHHh
Confidence 66666654321 1 233789999999886442211 1112568999999999987553 3344555
Q ss_pred ccC-ccEEEEeecCCC
Q 010991 169 TKS-HCKLGLTATLVR 183 (496)
Q Consensus 169 l~~-~~~L~LTATp~r 183 (496)
++. .++++||||+..
T Consensus 201 ~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 201 LNTSIQVVLLSATMPT 216 (237)
T ss_dssp SCTTCEEEEECSSCCH
T ss_pred CCCCCeEEEEEEecCH
Confidence 543 477999999963
No 74
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.81 E-value=3e-20 Score=178.14 Aligned_cols=150 Identities=17% Similarity=0.124 Sum_probs=108.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c------CCcEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~------~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
.|+|||.++++.++.+. ++++.+|||+|||++++.++.. + +.++||++|+++|+.||.+++.+++...+.
T Consensus 51 ~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGR---ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGF 127 (245)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 59999999999888764 8999999999999997665543 2 237999999999999999999998765555
Q ss_pred cEEEEcCCcc------ccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc---hHHHHHH--
Q 010991 98 QICRFTSDSK------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMFRKVI-- 166 (496)
Q Consensus 98 ~v~~~~g~~~------~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~---~~~~~~l-- 166 (496)
.+..+.|+.. ......++|+|+|++.+.....+... .+...++++||+||||++.+ ..|...+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~------~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~ 201 (245)
T 3dkp_A 128 RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP------GIDLASVEWLVVDESDKLFEDGKTGFRDQLAS 201 (245)
T ss_dssp CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSC------SCCCTTCCEEEESSHHHHHHHC--CHHHHHHH
T ss_pred eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCC------CcccccCcEEEEeChHHhcccccccHHHHHHH
Confidence 6666655432 11235678999999998654322100 11125789999999999976 2343333
Q ss_pred --Hhcc--CccEEEEeecCCC
Q 010991 167 --SLTK--SHCKLGLTATLVR 183 (496)
Q Consensus 167 --~~l~--~~~~L~LTATp~r 183 (496)
..+. ..++++||||+..
T Consensus 202 i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 202 IFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp HHHHCCCTTCEEEEEESSCCH
T ss_pred HHHhcCCCCcEEEEEeccCCH
Confidence 3322 3478999999953
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.76 E-value=1.1e-17 Score=182.45 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=80.1
Q ss_pred HHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------
Q 010991 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK--------- 322 (496)
Q Consensus 257 ~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--------- 322 (496)
..|.... ..+.++||||+++..++.+++.|. +.++||++++.+|.++++.|+.| .++++|+|+
T Consensus 430 ~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VLvaT~~l~~GlDip 506 (664)
T 1c4o_A 430 EGIRERA--ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIP 506 (664)
T ss_dssp HHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCT
T ss_pred HHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEEEccChhhcCccCC
Confidence 3444433 357899999999999999999984 56789999999999999999998 899999887
Q ss_pred ------ccCC-----CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHH
Q 010991 323 ------ISSH-----AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 373 (496)
Q Consensus 323 ------i~~~-----~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~ 373 (496)
+.+. +.|...|+||+||+||.++ +.++.+++..+..+
T Consensus 507 ~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~--------------G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 507 EVSLVAILDADKEGFLRSERSLIQTIGRAARNAR--------------GEVWLYADRVSEAM 554 (664)
T ss_dssp TEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT--------------CEEEEECSSCCHHH
T ss_pred CCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC--------------CEEEEEEcCCCHHH
Confidence 2222 5688999999999999872 34566777776644
No 76
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=168.75 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=109.7
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH-hcC-----CcEEEEEeChHHHHHHHHHHHHhhCC-CC
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RIK-----KSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-~~~-----~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (496)
..|+|+|.++++.++.+. +++.++++|||+|||++++.++. .+. ..+|||+|+++|+.|+.+.+..+... +.
T Consensus 113 ~~pt~iQ~~ai~~il~~~-~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp CSCCHHHHHHHHHHTSSS-CCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHcCC-CCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 368999999999888761 24899999999999999765544 332 26999999999999999999998653 45
Q ss_pred CcEEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc-hHHHHHH----Hhc
Q 010991 97 DQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRKVI----SLT 169 (496)
Q Consensus 97 ~~v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~~l----~~l 169 (496)
..+....|+.... .....+|+|+|++.|.....+.. .+....+++||+||||++.+ ..|...+ ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~-------~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-------FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTC-------CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred cEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcC-------CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 6677766654321 23457899999999865432210 11124788999999999886 4454333 333
Q ss_pred cC-ccEEEEeecCCC
Q 010991 170 KS-HCKLGLTATLVR 183 (496)
Q Consensus 170 ~~-~~~L~LTATp~r 183 (496)
+. .+++++|||+..
T Consensus 265 ~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 265 PRNCQMLLFSATFED 279 (300)
T ss_dssp CTTCEEEEEESCCCH
T ss_pred CCCCEEEEEeccCCH
Confidence 33 468999999964
No 77
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=1.4e-17 Score=162.09 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=108.8
Q ss_pred CCCCCcceEEEEEcCCCHHHHHHHHhhhc----------H--HHHHHh--------h-------------hhCCCcHHHH
Q 010991 210 GGFIANVQCAEVWCPMTKEFFSEYLKKEN----------S--KKKQAL--------Y-------------VMNPNKFRAC 256 (496)
Q Consensus 210 ~g~l~~~~~~~v~~~~~~~~~~~yl~~~~----------~--~~~~~l--------~-------------~~~~~K~~~l 256 (496)
...|++.....++|+|++++...|..... . .....+ . ...+.|+..+
T Consensus 22 ~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~~~~~~s~K~~~L 101 (271)
T 1z5z_A 22 ASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRT 101 (271)
T ss_dssp ------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHH
T ss_pred HhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCccccccCHHHHHH
Confidence 34688888999999999988666542110 0 000111 0 1234689999
Q ss_pred HHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--------
Q 010991 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-------- 322 (496)
Q Consensus 257 ~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-------- 322 (496)
..++.... ..++|+||||+++..++.++..|. +..+||++++.+|.+++++|++++.++++++|+
T Consensus 102 ~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Gln 180 (271)
T 1z5z_A 102 MEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 180 (271)
T ss_dssp HHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCC
T ss_pred HHHHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcC
Confidence 99987764 568999999999999999998872 677999999999999999999987788777776
Q ss_pred --------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHH
Q 010991 323 --------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 379 (496)
Q Consensus 323 --------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r 379 (496)
+++.+|||..+.||+||++|+| |.+.|++|.|++.+|+|+.+....
T Consensus 181 l~~a~~VI~~d~~wnp~~~~Q~~gR~~R~G-----------q~~~v~v~~li~~~TiEe~i~~~~ 234 (271)
T 1z5z_A 181 LTSANRVIHFDRWWNPAVEDQATDRVYRIG-----------QTRNVIVHKLISVGTLEEKIDQLL 234 (271)
T ss_dssp CTTCSEEEECSCCSCTTTC-------------------------CCEEEEEEETTSHHHHHHHHH
T ss_pred cccCCEEEEECCCCChhHHHHHHHhccccC-----------CCCceEEEEEeeCCCHHHHHHHHH
Confidence 5788999999999999999999 556799999999999999887543
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.73 E-value=1.4e-16 Score=173.79 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=80.1
Q ss_pred HHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---------
Q 010991 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK--------- 322 (496)
Q Consensus 257 ~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--------- 322 (496)
..|.... ..+.++||||+++..++.+++.|. +.++||++++.+|.++++.|++| .++++|+|.
T Consensus 436 ~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~VLVaT~~l~~GlDip 512 (661)
T 2d7d_A 436 GEIQARI--ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIP 512 (661)
T ss_dssp HHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSEEEESCCCSTTCCCT
T ss_pred HHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEEEEecchhhCCcccC
Confidence 3444433 457899999999999999999984 56789999999999999999998 899999887
Q ss_pred ------ccCC-----CCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHH
Q 010991 323 ------ISSH-----AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 373 (496)
Q Consensus 323 ------i~~~-----~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~ 373 (496)
+.+. +.|..+|+||+||+||.+ . +.++.+++..+..+
T Consensus 513 ~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~-----------~---G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 513 EVSLVAILDADKEGFLRSERSLIQTIGRAARNA-----------E---GRVIMYADKITKSM 560 (661)
T ss_dssp TEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST-----------T---CEEEEECSSCCHHH
T ss_pred CCCEEEEeCcccccCCCCHHHHHHHhCcccCCC-----------C---CEEEEEEeCCCHHH
Confidence 2222 678999999999999985 2 34566777776644
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.59 E-value=8.6e-16 Score=163.73 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=69.6
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---
Q 010991 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK--- 322 (496)
Q Consensus 251 ~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--- 322 (496)
.|+.++..++.... ..|.++||||+++..++.++..|. ...+||+..+.+|..+.+.|+.+ .|+|+|.
T Consensus 458 eK~~al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~VtVATdmAg 533 (822)
T 3jux_A 458 EKYEKIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---CEEEEETTTT
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---eEEEEcchhh
Confidence 36666666654321 357899999999999999999994 56799996666666666777766 6888887
Q ss_pred ----c----------------cCCCCChhHHHHHccCcCcCCC
Q 010991 323 ----I----------------SSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 ----i----------------~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
| ...+.|++.|.||+||+||.|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~ 576 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGD 576 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSC
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCC
Confidence 1 1345689999999999999985
No 80
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.55 E-value=5.6e-14 Score=133.69 Aligned_cols=147 Identities=14% Similarity=0.038 Sum_probs=100.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cC----CcEEEEEeChHHHHHHHHHHHHhhCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IK----KSCLCLATNAVSVDQWAFQFKLWSTI 94 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~----~~~LIl~P~~~L~~Qw~~e~~~~~~~ 94 (496)
...++++|.+++..+..+. ..++.+|||+|||.+...++.. .+ ..+++++|+++++.|..+.+....+.
T Consensus 59 ~~p~~~~q~~~i~~i~~g~---~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNS---VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCS---EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred cCChHHHHHHHHHHHhcCC---EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3567999999999887764 8999999999999764444322 12 27899999999999999999876543
Q ss_pred CC-CcEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCccc-CchHH-----HHHHH
Q 010991 95 QD-DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV-PAHMF-----RKVIS 167 (496)
Q Consensus 95 ~~-~~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~-~~~~~-----~~~l~ 167 (496)
.. ..++.-............+|+|+|++++..... . .-.++++||+||||.+ ....| +.++.
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~---------~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 136 EPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLE---------A--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp CTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHH---------H--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccCceEEEeechhhccCCCCCeEEEECHHHHHHHHH---------h--hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 21 223221111111112457899999998864421 1 1378999999999996 33333 33344
Q ss_pred hccCccEEEEeecCCC
Q 010991 168 LTKSHCKLGLTATLVR 183 (496)
Q Consensus 168 ~l~~~~~L~LTATp~r 183 (496)
..+..+.+++|||+..
T Consensus 205 ~~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 205 AYPEVRIVLMSATIDT 220 (235)
T ss_dssp HCTTSEEEEEECSSCC
T ss_pred hCCCCeEEEEecCCCH
Confidence 4445678999999863
No 81
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.47 E-value=3.3e-13 Score=120.91 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-- 322 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-- 322 (496)
..|+..+..++... .+.++||||+++..++.+++.|. +..+||++++.+|..+++.|+++ .+++||+|+
T Consensus 20 ~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv~T~~~ 95 (163)
T 2hjv_A 20 ENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLVATDVA 95 (163)
T ss_dssp GGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECGGG
T ss_pred HHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEECChh
Confidence 34667777777654 36799999999999999999983 67799999999999999999998 899999998
Q ss_pred -------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 -------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 -------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++|+..|.||+||++|.|+
T Consensus 96 ~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~ 131 (163)
T 2hjv_A 96 ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGN 131 (163)
T ss_dssp TTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTC
T ss_pred hcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCC
Confidence 45677899999999999999984
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.42 E-value=4.4e-13 Score=121.25 Aligned_cols=92 Identities=16% Similarity=0.083 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-- 322 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-- 322 (496)
..|+..+..++... .+.++||||+++..++.+++.|. +..+||++++.+|..+++.|+++ ++++||+|+
T Consensus 16 ~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 91 (172)
T 1t5i_A 16 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVATNLF 91 (172)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEESSCC
T ss_pred HHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEEECCch
Confidence 34667777777654 46799999999999999999983 56799999999999999999998 999999998
Q ss_pred -------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 -------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 -------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++|+..|.||+||++|.|+
T Consensus 92 ~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 92 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 127 (172)
T ss_dssp STTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGC
T ss_pred hcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCC
Confidence 45677899999999999999985
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.40 E-value=9.6e-13 Score=120.49 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-- 322 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-- 322 (496)
..|+..+..++... ..+.++||||+++..++.++..|. +..+||++++.+|.++++.|+++ ++++||+|+
T Consensus 30 ~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 106 (185)
T 2jgn_A 30 SDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVA 106 (185)
T ss_dssp GGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEEEEC--
T ss_pred HHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEcChh
Confidence 34666777777654 357899999999999999999983 56799999999999999999998 899999988
Q ss_pred -------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHHH
Q 010991 323 -------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 385 (496)
Q Consensus 323 -------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~~ 385 (496)
.++.++|+.+|+||+||++|.|+ ...++.+++.. +..+..+..+.+..
T Consensus 107 ~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~-------------~g~~~~~~~~~--~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 107 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN-------------LGLATSFFNER--NINITKDLLDLLVE 167 (185)
T ss_dssp ----CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTS-------------CEEEEEEECGG--GGGGHHHHHHHHHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCC-------------CcEEEEEEchh--hHHHHHHHHHHHHh
Confidence 45677899999999999999984 24556666643 33334444445543
No 84
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.9e-12 Score=117.26 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----
Q 010991 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---- 322 (496)
Q Consensus 252 K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---- 322 (496)
|+..+..++..+ .+.++||||+++..++.++..|. +..+||++++.+|..+++.|++| .+++||+|+
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSCCT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEecchhc
Confidence 445556666443 46799999999999999999984 56799999999999999999998 899999998
Q ss_pred -----------ccCCC------CChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCC
Q 010991 323 -----------ISSHA------GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 370 (496)
Q Consensus 323 -----------i~~~~------~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t 370 (496)
.++.+ .++..|+||+||++|.|+ .+.++.+++.+.
T Consensus 97 Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~-------------~g~~~~~~~~~~ 148 (175)
T 2rb4_A 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK-------------KGLAFNMIEVDE 148 (175)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----C-------------CEEEEEEECGGG
T ss_pred CCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCC-------------CceEEEEEccch
Confidence 24555 788999999999999884 356677776543
No 85
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.39 E-value=9.7e-13 Score=118.02 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee----
Q 010991 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK---- 322 (496)
Q Consensus 252 K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~---- 322 (496)
|+..+..++..+ .+.++||||+++..++.++..|. +..+||++++.+|.++++.|+++ ++++||+|+
T Consensus 17 K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 17 KYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDLLAR 92 (165)
T ss_dssp HHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEEGGGTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEcChhhc
Confidence 777778887665 36799999999999999999984 57799999999999999999998 899999998
Q ss_pred -----------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 -----------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 -----------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++|+..|.||+||++|.|+
T Consensus 93 G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~ 126 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 126 (165)
T ss_dssp TCCCCSCSEEEESSCCSSGGGGGGSSCSCC----
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhcccccCCC
Confidence 35667899999999999999984
No 86
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.38 E-value=3.1e-12 Score=119.69 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=81.5
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee-
Q 010991 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK- 322 (496)
Q Consensus 249 ~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~- 322 (496)
...|+.++..++... .+.++||||+++..++.++..|. +..+||++++.+|..+++.|++| .+++||+|+
T Consensus 15 ~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vlvaT~~ 90 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVLVATDV 90 (212)
T ss_dssp TTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEEEECTT
T ss_pred HHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEEEecCh
Confidence 456888888888754 37799999999999999999983 66799999999999999999998 999999998
Q ss_pred --------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 --------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 --------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++|+..|.||+||+||.|+
T Consensus 91 ~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~ 127 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGR 127 (212)
T ss_dssp TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC-
T ss_pred hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCC
Confidence 35677899999999999999984
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.38 E-value=7.9e-13 Score=141.46 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=93.5
Q ss_pred CCCcHHHHHHHHHHH---hcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEE
Q 010991 24 AQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (496)
+++||+|.+.+..+. ..+ +++++.+|||+|||++++.++.....+++|++||++|..|+.+++..+....+.++.
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 578999999877653 344 589999999999999998888887889999999999999999999886443345566
Q ss_pred EEcCCccc--------------------------------------------------------cccCCCcEEEEchHHh
Q 010991 101 RFTSDSKE--------------------------------------------------------RFRGNAGVVVTTYNMV 124 (496)
Q Consensus 101 ~~~g~~~~--------------------------------------------------------~~~~~~~IiItT~~~l 124 (496)
.+.|...- .....++|+|+||+.|
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 66553110 0013579999999999
Q ss_pred hcccCCChhHHHHHHHH-hcCCccEEEEcCCcccCc
Q 010991 125 AFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPA 159 (496)
Q Consensus 125 ~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~ 159 (496)
.....+. .+ ...+..++|+||||++.+
T Consensus 160 ~~~~~~~--------~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 160 FIDRYRE--------FIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HCHHHHT--------TSCCCSTTEEEEETTGGGGGG
T ss_pred cCHHHHH--------hcCCCcCCeEEEEecccchHH
Confidence 7552111 01 013567899999999986
No 88
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=117.53 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=87.2
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee---
Q 010991 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK--- 322 (496)
Q Consensus 251 ~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~--- 322 (496)
.|+..+..++. ..+.++||||+++..++.+++.|. +..+||++++.+|.++++.|+++ ++++||+|+
T Consensus 41 ~K~~~L~~~l~----~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLvaT~~~~ 115 (191)
T 2p6n_A 41 AKMVYLLECLQ----KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLVATDVAS 115 (191)
T ss_dssp GHHHHHHHHHT----TSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEEECHHHH
T ss_pred HHHHHHHHHHH----hCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEEEcCchh
Confidence 45555555553 335689999999999999999983 66799999999999999999998 899999988
Q ss_pred ------------ccCCCCChhHHHHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHHHHHHHHHHHc
Q 010991 323 ------------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 386 (496)
Q Consensus 323 ------------i~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~~~r~~~l~~~ 386 (496)
.++.++|+..|+||+||++|.|+ . ..++.|++... +..+...-...+...
T Consensus 116 ~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~----------~---g~~i~l~~~~~-~~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 116 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGN----------T---GIATTFINKAC-DESVLMDLKALLLEA 177 (191)
T ss_dssp TTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC-------------C---CEEEEEECTTS-CHHHHHHHHHHHHHT
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCC----------C---cEEEEEEcCch-hHHHHHHHHHHHHHc
Confidence 45677899999999999999985 2 34566676542 334444445555443
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.35 E-value=2.1e-12 Score=137.75 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=55.3
Q ss_pred CCCCcHHHHHHHHHH---HhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 23 HAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+++||+|.+++..+ +..+ +++++.+|||+|||++++.++.....+++|++||.+|..||.+++.++
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~--~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHG--KTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhc
Confidence 468999999987754 3344 489999999999999998888888899999999999999999998874
No 90
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.28 E-value=1e-11 Score=122.13 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=79.3
Q ss_pred hCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 248 ~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
....|+.++..++..+. +.++||||+++..++.++..|. +..+||++++.+|..+++.|++| .++++|+|+
T Consensus 11 ~~~~K~~~L~~ll~~~~---~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLVaT~ 86 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLVATD 86 (300)
T ss_dssp CSSSHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEEECS
T ss_pred CHHHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEEEec
Confidence 34568888888887653 7899999999999999999983 56799999999999999999998 899999998
Q ss_pred ---------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 ---------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 ---------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++|+..|.||+||+||.|+
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~ 124 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGR 124 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC----
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCC
Confidence 34666899999999999999984
No 91
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.94 E-value=3.1e-13 Score=121.97 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee--
Q 010991 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-- 322 (496)
Q Consensus 250 ~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~-- 322 (496)
..|+..+..++... .+.++||||+++..++.+++.|. +..+||++++.+|.++++.|++| ++++||+|+
T Consensus 15 ~~k~~~l~~ll~~~---~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQP---EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVLVATDVA 90 (170)
Confidence 45777777777543 46799999999999999999984 67899999999999999999998 899999988
Q ss_pred -------------ccCCCCChhHHHHHccCcCcCCC
Q 010991 323 -------------ISSHAGSRRQEAQRLGRILRAKG 345 (496)
Q Consensus 323 -------------i~~~~~s~~~~~Qr~GR~~R~g~ 345 (496)
.++.++|+..|+||+||++|.|+
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~ 126 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 126 (170)
Confidence 34667899999999999999984
No 92
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.05 E-value=4e-10 Score=122.65 Aligned_cols=126 Identities=17% Similarity=0.050 Sum_probs=90.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
.+.++|.|..++..++.+ . |..+.||+|||+++..++. ..+..++||+||..|+.|-.+.+..++..-+..+
T Consensus 77 G~~Pt~VQ~~~ip~LlqG----~-IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv 151 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEG----K-IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV 151 (997)
T ss_dssp CCCCCHHHHHHHHHHHTT----S-EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCCcHHHHhhcccccCC----c-eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 458899999999977654 2 8899999999999766552 2356899999999999998877777765556678
Q ss_pred EEEcCCcccc---ccCCCcEEEEchHHhhcccCCChhHHHHH----HHHhcC---CccEEEEcCCcccC
Q 010991 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKII----EEIRNR---EWGLLLMDEVHVVP 158 (496)
Q Consensus 100 ~~~~g~~~~~---~~~~~~IiItT~~~l~~~~~r~~~~~~~~----~~l~~~---~~~~vIlDEaH~~~ 158 (496)
+++.|+.... ....++|+++|++.|..+.-+ +.+ +.+..+ .+.++|+||||.+.
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLr-----d~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFDYLR-----DNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHH-----HTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHH-----HhhhcchhhcccccCCCcceEEEechHHHH
Confidence 8888775421 123579999999988311000 000 011124 78999999999765
No 93
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.83 E-value=5.5e-09 Score=102.29 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=80.4
Q ss_pred hCCCcHHHHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 248 ~~~~K~~~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
..++|+.+++.|+.... ..|+|++|||+++.+++.+.+.|. +..++|.+...++ +. .+. .+.++++++
T Consensus 106 ~~SGKf~~L~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~-~~~i~Llts 178 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQ-EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDF-SCTVHLFSS 178 (328)
T ss_dssp HTCHHHHHHHHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CC-SEEEEEEES
T ss_pred HcCccHHHHHHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccC-CceEEEEEC
Confidence 47899999999998887 789999999999999999999995 3457888654322 11 122 445555444
Q ss_pred --------------------ccCCCCChhHH-HHHccCcCcCCCCccccccCCCCceeEEEEEEEcCCChHHHHH
Q 010991 323 --------------------ISSHAGSRRQE-AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 376 (496)
Q Consensus 323 --------------------i~~~~~s~~~~-~Qr~GR~~R~g~~~~~~~~~~~~~~~~~vy~lvs~~t~e~~~~ 376 (496)
++++.||+.+. +|++.|++|++.+ |++.|.||+||+.+|+|+...
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~g---------q~k~v~V~RLvt~~TiEh~~l 244 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKG---------LERYAPIVRLVAINSIDHCRL 244 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC------------------CCEEEEEETTSHHHHHH
T ss_pred CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccC---------CCCcceEEEEeCCCCHHHHHH
Confidence 45677999987 9999999999643 667899999999999998654
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.38 E-value=5.6e-07 Score=97.17 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHH---HhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHhh
Q 010991 24 AQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWS 92 (496)
Q Consensus 24 ~~lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~~ 92 (496)
+++||+|.+.+..+ +..+ +++++.+|||+|||++++.++.. .+.+++|++||.++..|+.+++.++.
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~--~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKS--YGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHS--SEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 57899999998865 3344 58999999999999997766543 36799999999999999999998864
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.30 E-value=1.3e-05 Score=86.61 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..|.+.|.+|+..++.++ ..+|.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~---~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCS---EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCC---CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468999999999888654 7899999999999987666544 3568999999999999988888763
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.28 E-value=5.3e-06 Score=88.66 Aligned_cols=128 Identities=12% Similarity=0.039 Sum_probs=87.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
...|-+.|.+++..++.++ ..+|.+++|+|||.++..++. ..+.++++++||...+....+.. +.+ .
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~---~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~----~~~---a 256 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHR---LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT----GRT---A 256 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCS---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH----TSC---E
T ss_pred cCCCCHHHHHHHHHHHhCC---EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh----ccc---H
Confidence 5678999999999888654 889999999999987655543 35679999999998776544432 211 1
Q ss_pred EEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEee
Q 010991 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179 (496)
Q Consensus 100 ~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTA 179 (496)
..++.-... .. + .+..... ....+++||+||++.+....+..++..++...++.|.|
T Consensus 257 ~Tih~ll~~--~~-------~--~~~~~~~------------~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 257 STVHRLLGY--GP-------Q--GFRHNHL------------EPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp EEHHHHTTE--ET-------T--EESCSSS------------SCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEE
T ss_pred HHHHHHHcC--Cc-------c--hhhhhhc------------ccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEe
Confidence 111110000 00 0 0000000 01478999999999999888888988888888899999
Q ss_pred cCCC
Q 010991 180 TLVR 183 (496)
Q Consensus 180 Tp~r 183 (496)
-|.+
T Consensus 314 D~~Q 317 (574)
T 3e1s_A 314 DTDQ 317 (574)
T ss_dssp CTTS
T ss_pred cccc
Confidence 8765
No 97
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.26 E-value=3.6e-06 Score=90.70 Aligned_cols=143 Identities=9% Similarity=-0.016 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH---Hh----cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcE
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~---~~----~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (496)
-+.|..|+..++.++ ..+|.+++|+|||.+...++ .. .+.++++++||..++.+..+.+..+...-+...
T Consensus 151 ~~~Q~~Ai~~~l~~~---~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBS---EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 578999999888664 89999999999996543332 22 234899999999999988877765421000000
Q ss_pred EEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEee
Q 010991 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179 (496)
Q Consensus 100 ~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTA 179 (496)
... .........-..++-.+++....... .-....++++|+|||+.+....+..++..++...++.|-|
T Consensus 228 ~~~-~~~~~~~~Tih~ll~~~~~~~~~~~~----------~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 228 EQK-KRIPEDASTLHRLLGAQPGSQRLRHH----------AGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp CCC-CSCSCCCBTTTSCC-----------C----------TTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEE
T ss_pred HHH-hccchhhhhhHhhhccCCCchHHHhc----------cCCCCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEc
Confidence 000 00000000001111111111000000 0011368899999999877777888999888888888888
Q ss_pred cCCC
Q 010991 180 TLVR 183 (496)
Q Consensus 180 Tp~r 183 (496)
=+.+
T Consensus 297 D~~Q 300 (608)
T 1w36_D 297 DRDQ 300 (608)
T ss_dssp CTTS
T ss_pred chhh
Confidence 7653
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.23 E-value=1.9e-06 Score=93.66 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=55.5
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..|-+.|.+|+..++... .-.+|.+|+|+|||.+.+.++.. .+.++||++||...+++..+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999998754 36899999999999987666654 4679999999999999998888764
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.3e-05 Score=86.87 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..|.+.|.+|+..++..+ ..+|.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~---~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRP---LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCS---EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCC---CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 468999999999887653 6899999999999886665543 3679999999999999999988774
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.10 E-value=5.3e-05 Score=83.87 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
...|.+.|.+|+..++.++ ..+|.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~---~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSS---EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCC---eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3468999999999888654 7899999999999886666543 3468999999999999888888753
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.06 E-value=2.4e-05 Score=81.33 Aligned_cols=133 Identities=11% Similarity=0.047 Sum_probs=83.5
Q ss_pred CCcHHHHHHHHHHHhc---CCCcceEEEeCCCCChHHHHHHHHHhc---CC-cEEEEEeChHHHHHHHHHHHHhhCCCCC
Q 010991 25 QPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACRI---KK-SCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~~~~~---~~-~~LIl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (496)
.|-+-|++++..++.. +. +..+|.++.|+|||.++..++..+ +. ++++++||...+....+.+ +..
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~~~-- 97 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----GKE-- 97 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----SSC--
T ss_pred cCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----ccc--
Confidence 6899999999976543 21 388999999999998876665443 33 7999999988666544433 211
Q ss_pred cEEEEcCCcccc--ccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEE
Q 010991 98 QICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175 (496)
Q Consensus 98 ~v~~~~g~~~~~--~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L 175 (496)
+..+++-.... .......+.... .. ....++++|+||+|.+....+..++..+....++
T Consensus 98 -~~T~h~~~~~~~~~~~~~~~~~~~~------~~------------~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~ 158 (459)
T 3upu_A 98 -ASTIHSILKINPVTYEENVLFEQKE------VP------------DLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTI 158 (459)
T ss_dssp -EEEHHHHHTEEEEECSSCEEEEECS------CC------------CCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEE
T ss_pred -hhhHHHHhccCcccccccchhcccc------cc------------cccCCCEEEEECchhCCHHHHHHHHHhccCCCEE
Confidence 22221110000 000011111110 00 0146889999999999888888788877777788
Q ss_pred EEeecCCC
Q 010991 176 GLTATLVR 183 (496)
Q Consensus 176 ~LTATp~r 183 (496)
.+.|-+.+
T Consensus 159 ~~vGD~~Q 166 (459)
T 3upu_A 159 IGIGDNKQ 166 (459)
T ss_dssp EEEECTTS
T ss_pred EEECCHHH
Confidence 88887654
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.68 E-value=0.00084 Score=67.70 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=87.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----c-CCcEEEEEeChHHHHHHHHHHHHhhC-CCC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----I-KKSCLCLATNAVSVDQWAFQFKLWST-IQD 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~-~~~~LIl~P~~~L~~Qw~~e~~~~~~-~~~ 96 (496)
.+.|.|||...+..+... +..++..+-+.|||.++...+.. . +.++++++|+..-+..+.+.+..+.. .|.
T Consensus 161 p~~L~p~Qk~il~~l~~~---R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ 237 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (385)
T ss_dssp ECCCCHHHHHHHHHHHHS---SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCHHHHHHHHhhccC---cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChH
Confidence 368999999999866432 36888999999999885444332 2 34799999999877777777776642 222
Q ss_pred -C--cEEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc--hHHHHHHHhccC
Q 010991 97 -D--QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTKS 171 (496)
Q Consensus 97 -~--~v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~~l~~l~~ 171 (496)
. .+...+.... .+..+..|.+.+-+ .+.+....+.++|+||+|.+++ ..+..+...+..
T Consensus 238 ll~~~~~~~~~~~I-~f~nGs~i~~lsa~---------------~~slrG~~~~~viiDE~a~~~~~~el~~al~~~ls~ 301 (385)
T 2o0j_A 238 FLQPGIVEWNKGSI-ELDNGSSIGAYASS---------------PDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISS 301 (385)
T ss_dssp TTSCCEEEECSSEE-EETTSCEEEEEECS---------------HHHHHTSCCSEEEEESGGGSTTHHHHHHHHHHHHHS
T ss_pred hhhhhhccCCccEE-EeCCCCEEEEEECC---------------CCCccCCCCCEEEechhhhcCCCHHHHHHHHHHhhc
Confidence 1 1111111111 12223333332210 1334457889999999999996 345544444433
Q ss_pred --ccEEEEeecCCCC
Q 010991 172 --HCKLGLTATLVRE 184 (496)
Q Consensus 172 --~~~L~LTATp~r~ 184 (496)
..++.+..||...
T Consensus 302 ~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 302 GRRSKIIITTTPNGL 316 (385)
T ss_dssp TTCCEEEEEECCCSS
T ss_pred CCCCcEEEEeCCCCc
Confidence 3677888888644
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.67 E-value=0.0001 Score=75.37 Aligned_cols=109 Identities=11% Similarity=-0.013 Sum_probs=75.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEchHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT~~~l 124 (496)
-.+|.++.|+|||......+. ..+.+|++|+++++..|.+.+.+. +.. .....-|.|++.+
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~--~~~~lVlTpT~~aa~~l~~kl~~~-~~~----------------~~~~~~V~T~dsf 223 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVN--FEEDLILVPGRQAAEMIRRRANAS-GII----------------VATKDNVRTVDSF 223 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCC--TTTCEEEESCHHHHHHHHHHHTTT-SCC----------------CCCTTTEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhc--cCCeEEEeCCHHHHHHHHHHhhhc-Ccc----------------ccccceEEEeHHh
Confidence 456889999999987666553 268899999999999999988542 110 0112348888876
Q ss_pred hcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEeecCCC
Q 010991 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (496)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTATp~r 183 (496)
....... ...++++||+|||-.+....+..++..++. .++.|.|=|.+
T Consensus 224 L~~~~~~----------~~~~~d~liiDE~sm~~~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 224 LMNYGKG----------ARCQFKRLFIDEGLMLHTGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp HHTTTSS----------CCCCCSEEEEETGGGSCHHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred hcCCCCC----------CCCcCCEEEEeCcccCCHHHHHHHHHhCCC-CEEEEecCccc
Confidence 5332110 012489999999998887777666666655 77888887754
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.58 E-value=0.0013 Score=70.37 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=88.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH----hc-CCcEEEEEeChHHHHHHHHHHHHhhCC-CC
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RI-KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~----~~-~~~~LIl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (496)
.+.|.|||...+..+... +..++..+-|.|||.++...+. .. +.++++++|+...+..+.+.++.+... |.
T Consensus 161 ~~~l~p~Q~~i~~~l~~~---r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp BCCCCHHHHHHHHHHHHC---SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred cCcCCHHHHHHHHhhccc---cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 367999999999876332 4688999999999987543322 22 347999999999888887888776532 21
Q ss_pred -Cc--EEEEcCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCc--hHHHHHHHhccC
Q 010991 97 -DQ--ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTKS 171 (496)
Q Consensus 97 -~~--v~~~~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~~l~~l~~ 171 (496)
.. +...+.. .-.+..+..|.+.+-+ ...+.+...+++|+||+|.+++ ..+..+...+..
T Consensus 238 ~~~~~~~~~~~~-~i~~~nGs~i~~~s~~---------------~~~lrG~~~~~~iiDE~~~~~~~~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 238 FLQPGIVEWNKG-SIELDNGSSIGAYASS---------------PDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISS 301 (592)
T ss_dssp TTSCCEEEECSS-EEEETTSCEEEEEECC---------------HHHHHHSCCSEEEEETGGGCTTHHHHHHHHHHHHSS
T ss_pred hhccccccCCcc-EEEecCCCEEEEEeCC---------------CCCccCCCcceEEEehhccCCchhHHHHHHHHHhcc
Confidence 11 1111111 1112222333322110 1233346789999999999987 445544444433
Q ss_pred --ccEEEEeecCCCC
Q 010991 172 --HCKLGLTATLVRE 184 (496)
Q Consensus 172 --~~~L~LTATp~r~ 184 (496)
..++.++.||...
T Consensus 302 ~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 302 GRRSKIIITTTPNGL 316 (592)
T ss_dssp SSCCEEEEEECCCTT
T ss_pred CCCceEEEEeCCCCc
Confidence 3678888899654
No 105
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.38 E-value=0.00067 Score=73.38 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-------CCcEEEEEeChHHHHHHHHHHHHhhC
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-------~~~~LIl~P~~~L~~Qw~~e~~~~~~ 93 (496)
.|.|.|.+++.. .. +..+|.++.|+|||.+.+.-+..+ ..++|++++|...+.+..+.+....+
T Consensus 9 ~Ln~~Q~~av~~--~~---~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVAA--PR---SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHTC--CS---SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHhC--CC---CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 688999999972 12 478999999999999866544332 14799999999999999999988754
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.18 E-value=0.0019 Score=58.18 Aligned_cols=34 Identities=21% Similarity=0.060 Sum_probs=26.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeCh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~ 78 (496)
-.++.+|||+|||..++..+.. .+.+++++.|..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4678899999999988777654 356899999974
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.15 E-value=0.0019 Score=58.57 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=27.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeCh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~ 78 (496)
.-.++.+|||+|||..++..+.+. +.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 356778999999998888877654 67999999974
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.12 E-value=0.0022 Score=59.00 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=26.4
Q ss_pred eEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChH
Q 010991 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~ 79 (496)
-++.+|||+|||..++..+.. .+.+++|+.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 346899999999888887765 4679999999763
No 109
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.92 E-value=0.0072 Score=59.20 Aligned_cols=113 Identities=13% Similarity=0.223 Sum_probs=68.0
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEE-EeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEc
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGII-VLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il-~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (496)
.-.+...+.+..++..+...+.++ .+|+|+|||..+-+++..++.+++.+-++..-.....+.+..+.....
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~------- 101 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAAS------- 101 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCC-------
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcc-------
Confidence 345677777887887664445544 466999999999888887776666555433212222222222110000
Q ss_pred CCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC-ch---HHHHHHHhccCccEEEEee
Q 010991 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AH---MFRKVISLTKSHCKLGLTA 179 (496)
Q Consensus 104 g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~~---~~~~~l~~l~~~~~L~LTA 179 (496)
. ....+++|+||+|.+. .. .+.+.++......++.+|+
T Consensus 102 ------------------------------------~--~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 102 ------------------------------------F--DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp ------------------------------------C--SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred ------------------------------------c--CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 0 0256799999999998 44 3444555555567777777
Q ss_pred cCC
Q 010991 180 TLV 182 (496)
Q Consensus 180 Tp~ 182 (496)
++.
T Consensus 144 n~~ 146 (324)
T 3u61_B 144 NNI 146 (324)
T ss_dssp SSG
T ss_pred CCc
Confidence 654
No 110
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.87 E-value=0.02 Score=56.00 Aligned_cols=44 Identities=11% Similarity=-0.013 Sum_probs=29.8
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHH
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQ 87 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e 87 (496)
..+.+|.+|+|+|||..+-+++... +.+++.+.. ..+..++...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~ 83 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-DDFAQAMVEH 83 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-HHHHHHHHHH
Confidence 3578999999999999987777655 556666544 3344444333
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.83 E-value=0.0015 Score=60.82 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=27.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeCh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~ 78 (496)
.-.++.+|||+|||..++..+... +.+++++.|..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 456677999999999888777654 56899998866
No 112
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.82 E-value=0.0036 Score=64.57 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
..+..++..+...+.+|.+|+|+|||.++-.++.....+++-+.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 44555666665457899999999999998888877766554443
No 113
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.76 E-value=0.0087 Score=52.78 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-++.+.+.+..++.....++.+|.+|+|+|||..+-.++..+
T Consensus 26 g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 26 GRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 355666666666665545688999999999998877776554
No 114
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.60 E-value=0.016 Score=51.04 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-+.-+.+.+..++..+..++.+|.+|+|+|||..+-.++..+
T Consensus 26 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 366666777667765555689999999999999876666543
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.58 E-value=0.014 Score=57.60 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHH---hcCC-CcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 26 PRPYQEKSLSKMF---GNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 26 lr~yQ~~al~~~~---~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
++|+|.+++..+. .+++ +...++.+|.|+|||..+..++..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 6899999887653 3443 33478899999999999988887653
No 116
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.58 E-value=0.0056 Score=60.13 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.+.+|.+|+|+|||.++-+++...+.+++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 468999999999999998888887777666644
No 117
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.57 E-value=0.015 Score=53.39 Aligned_cols=36 Identities=17% Similarity=-0.000 Sum_probs=26.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~ 79 (496)
.--++.+|||+|||...+..+.. .+.+++|+-|...
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 34577899999999766666543 3678999999764
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.56 E-value=0.019 Score=52.02 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-+....+.+..++..+...+.+|.+|+|+|||..+-.++..+
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 466677777777776644568999999999998877666543
No 119
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.45 E-value=0.011 Score=59.54 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=27.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
++.+|.+|+|+|||.++-+++...+.+++.+.+
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 588999999999999998888887777666554
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.42 E-value=0.013 Score=58.47 Aligned_cols=44 Identities=18% Similarity=0.084 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHHHh----cCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 24 AQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+.-|+.+.+.+..++. ++..+..+|.+|+|+|||..+-.++..+
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4447777776665543 3344578999999999999987777654
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.35 E-value=0.013 Score=55.87 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=27.4
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
...+.+|.+|+|+|||.++-+++...+.+++.+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 3457899999999999999888887777766554
No 122
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.27 E-value=0.0072 Score=51.76 Aligned_cols=25 Identities=8% Similarity=-0.157 Sum_probs=19.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.+.+|.+|+|+|||.++-++.....
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 5899999999999988766554444
No 123
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.023 Score=55.15 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-++...+.+..++..+...+.++.+|+|+|||..+-.++..+
T Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 29 GQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp SCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 366677777777776644468999999999999887777654
No 124
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.0048 Score=60.97 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
++...+.+..++..+...+.++.+|+|+|||..+-.++..+
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455666667766544468999999999999877766553
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.15 E-value=0.014 Score=53.87 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
...+.+..+......+..+|.+|+|+|||..+-.++..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34445555555434468999999999999887666644
No 126
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.15 E-value=0.0096 Score=57.04 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
...+.+|.+|+|+|||.++-+++.....+++.+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 34578999999999999998888887776666543
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.14 E-value=0.022 Score=50.52 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHH---hc---CCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHH
Q 010991 27 RPYQEKSLSKMF---GN---GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 27 r~yQ~~al~~~~---~~---~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
.+.|.+++..+. .+ ..+...+|.+|+|+|||..+-+++..+ +.++++ ++...+...+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-FDTKDLIFRLKHLM 86 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-EEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHHHHh
Confidence 467888888653 21 123478888999999999876665443 334444 44445555554443
No 128
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.14 E-value=0.023 Score=53.80 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=26.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC---CcEEEEEeChHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAVS 80 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~---~~~LIl~P~~~L 80 (496)
.+.+|.+|+|+|||.++-+++.... .+++.+ +...+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v-~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISL-NCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE-EGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE-ecCCC
Confidence 5899999999999998877776654 355544 43433
No 129
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.13 E-value=0.0093 Score=59.51 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
++.+|.+|+|+|||.++-+++...+.+++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 468999999999999999888888777666543
No 130
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.11 E-value=0.028 Score=55.26 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHhc-----CCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 26 PRPYQEKSLSKMFGN-----GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 26 lr~yQ~~al~~~~~~-----~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
-++...+.+..++.. ....+.+|.+|+|+|||.++-.++...+.+++.+
T Consensus 33 G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 33 GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 355555555555432 2335799999999999999888877776665443
No 131
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.02 Score=55.62 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-++...+.+..++..++..+.++.+|.|+|||..+-.++..+
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 366677777778877654458999999999998887776654
No 132
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.10 E-value=0.012 Score=60.63 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=26.1
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhc-CCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~-~~~~LIl~P 76 (496)
.++.+|.+|+|+|||.++-+++... ..+++.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3578999999999999999888887 444444433
No 133
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.033 Score=54.30 Aligned_cols=34 Identities=12% Similarity=-0.026 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH
Q 010991 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~ 65 (496)
+.+...+.+++....++.+|.|+|||-.+..++.
T Consensus 7 ~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 7 ETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445556665555788899999999988777665
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.02 E-value=0.051 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=19.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+.+|.+|+|+|||.++-+++..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999887666543
No 135
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.99 E-value=0.022 Score=61.06 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=80.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEE
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~ 102 (496)
...+.+-|.+++..++.-. .+..+|.++-|.|||...-.++......++|.+|+..-+.. +..+.+-
T Consensus 173 ~~~~T~dQ~~al~~~~~~~-~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~----l~~~~~~-------- 239 (671)
T 2zpa_A 173 TGAPQPEQQQLLKQLMTMP-PGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDV----LAQFAGE-------- 239 (671)
T ss_dssp CSSCCHHHHHHHHHHTTCC-SEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHH----HHHHHGG--------
T ss_pred CCCCCHHHHHHHHHHHHhh-hCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHH----HHHHhhC--------
Confidence 3467889999999877643 23578889999999977666666666778999999875542 3333210
Q ss_pred cCCccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhccCccEEEEeecCC
Q 010991 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (496)
Q Consensus 103 ~g~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~~~~~L~LTATp~ 182 (496)
.|-+..|+.+. . .....++||||||=.++.+...+++. ...++.||.|.-
T Consensus 240 ------------~i~~~~Pd~~~-------------~--~~~~~dlliVDEAAaIp~pll~~ll~---~~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ------------KFRFIAPDALL-------------A--SDEQADWLVVDEAAAIPAPLLHQLVS---RFPRTLLTTTVQ 289 (671)
T ss_dssp ------------GCCBCCHHHHH-------------H--SCCCCSEEEEETGGGSCHHHHHHHHT---TSSEEEEEEEBS
T ss_pred ------------CeEEeCchhhh-------------h--CcccCCEEEEEchhcCCHHHHHHHHh---hCCeEEEEecCC
Confidence 01122333221 1 12468999999999999998887765 335788888865
Q ss_pred CC
Q 010991 183 RE 184 (496)
Q Consensus 183 r~ 184 (496)
..
T Consensus 290 GY 291 (671)
T 2zpa_A 290 GY 291 (671)
T ss_dssp ST
T ss_pred cC
Confidence 43
No 136
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.98 E-value=0.0067 Score=59.69 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=25.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc-CCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~-~~~~LIl~P 76 (496)
++.+|.+|+|+|||..+-+++... ..+++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 578899999999999999888887 444444433
No 137
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.97 E-value=0.15 Score=52.31 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=28.0
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHHHHHHHH
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAF 86 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L~~Qw~~ 86 (496)
..+.+|.+|+|+|||..+-+++..+ ..+++++.. ..+..++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~~~~~~~~~ 177 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVD 177 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHH
Confidence 3578999999999999877766544 445555443 334443333
No 138
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.95 E-value=0.078 Score=52.75 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHHHhc----CCCc--ceEEEeCCCCChHHHHHHHHHhc
Q 010991 24 AQPRPYQEKSLSKMFGN----GRAR--SGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~----~~~~--~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+.=|+.+.+.+..++.. ..+. ..+|.+|+|+|||..+-.++...
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34477777777666543 3334 68899999999999887777665
No 139
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.88 E-value=0.021 Score=53.01 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~ 79 (496)
.--++.++||+|||..++-.+.+ .+.+++|+-|...
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 34577899999999887777654 3679999999764
No 140
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.86 E-value=0.023 Score=56.67 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=27.7
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.++.+|.+|+|+|||.++-+++...+.+++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 4578999999999999998888887776665544
No 141
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.75 E-value=0.02 Score=48.97 Aligned_cols=24 Identities=8% Similarity=-0.231 Sum_probs=20.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+.+|.+|+|+|||.++-++....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999987776543
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.66 E-value=0.026 Score=53.08 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=27.5
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
.++.+|.+|+|+|||..+-+++.....+++.+..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEechH
Confidence 35688999999999999888888777776655443
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.63 E-value=0.11 Score=47.36 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhc
Q 010991 25 QPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.-++...+.+..++..+. ....+|.+|.|+|||..+-.++...
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446777777777776542 2357899999999998877766554
No 144
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.62 E-value=0.073 Score=52.82 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHHHHHh----cCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 24 AQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+.-|+.+.+.+..++. .+..++.+|.+|+|+|||..+-.++...
T Consensus 21 ~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 21 LPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3447777777777663 2344688999999999999887776654
No 145
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.58 E-value=0.043 Score=49.60 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=25.4
Q ss_pred cceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATN 77 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~ 77 (496)
.-.++.+|||+|||...+-.+. ..+.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 3567889999999965555543 346789999987
No 146
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.021 Score=57.62 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=31.7
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeCh
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~ 78 (496)
..++.++.+|+|+|||+.+-+++...+.+++.|..+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 4468899999999999999999999988888777654
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.51 E-value=0.082 Score=51.32 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHh-----cCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEE
Q 010991 26 PRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (496)
Q Consensus 26 lr~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LI 73 (496)
-++...+.+..++. +....+.+|.+|+|+|||..+-.++.....+++.
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 35555555555443 1223589999999999999988887766555443
No 148
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.38 E-value=0.016 Score=56.07 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
++...+.+..++..+...+.++.+|+|+|||..+-.++..+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 45556666666665544468999999999999887777654
No 149
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.36 E-value=0.034 Score=57.69 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=60.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcc-----------------
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK----------------- 107 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~----------------- 107 (496)
...+.+-+|+|||++...++...++++|||||+...+.||+++++.|++ . .|..|-.-..
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~--~-~v~~fp~~e~lpyd~~~p~~~~~~~Rl 92 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD--Q-MVMNLADWETLPYDSFSPHQDIISSRL 92 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCS--S-CEEECCCCCSCTTCSSCCCHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCC--C-cEEEEeCcccccccccCCChHHHHHHH
Confidence 5678899999999998888888899999999999999999999998853 2 2544433200
Q ss_pred ----ccccCCCcEEEEchHHhhcc
Q 010991 108 ----ERFRGNAGVVVTTYNMVAFG 127 (496)
Q Consensus 108 ----~~~~~~~~IiItT~~~l~~~ 127 (496)
....+...|+|+|.+.+...
T Consensus 93 ~~l~~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 93 STLYQLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp HHHHHGGGCCSSEEEEEHHHHHBC
T ss_pred HHHHHHHhCCCCEEEEEHHHHhhc
Confidence 00134567999998888654
No 150
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.20 E-value=0.063 Score=52.00 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.9
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
.+..+|.+|+|+|||.++-+++...+.+++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 357889999999999999888888877666553
No 151
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.10 E-value=0.092 Score=51.99 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHhcCCC-cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 26 PRPYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-++...+.+..++..++. ...++.+|.|+|||..+-.++..+.
T Consensus 20 g~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 366666777777765532 3468999999999999877776653
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.08 E-value=0.086 Score=52.21 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHHHHHh----cCCCcceEEEeCCCCChHHHHHHHHHhc------CCcEEEEE
Q 010991 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLA 75 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~~~~~------~~~~LIl~ 75 (496)
.+.-|..+.+.+..++. ++.....+|.+|.|+|||..+-.++... ..+++.+.
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34457788888877765 3344678999999999999877776654 44555544
No 153
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.05 E-value=0.22 Score=49.27 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=32.4
Q ss_pred cHHHHHHHHH---HHhcCC--CcceEEEeCCCCChHHHHHHHHHhcCC--cEEEEE
Q 010991 27 RPYQEKSLSK---MFGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLA 75 (496)
Q Consensus 27 r~yQ~~al~~---~~~~~~--~~~~il~~~tG~GKTl~~i~~~~~~~~--~~LIl~ 75 (496)
++.+.+++.. ++..+. .+..+|.+|+|+|||.++-+++..+.. +.+.+.
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 4555555433 333332 247899999999999999888877654 555444
No 154
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.05 E-value=0.025 Score=54.70 Aligned_cols=33 Identities=15% Similarity=-0.054 Sum_probs=27.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
...++.+|+|+|||.++-+++..++.+++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSA 69 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeH
Confidence 466778999999999999999888888777665
No 155
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.95 E-value=0.083 Score=54.96 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.0
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
..+.+|.+|+|+|||.++-+++...+.+++.+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 357899999999999999888888776666554
No 156
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.031 Score=57.19 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.6
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
..++.++.+|+|+|||+.+-+++...+.+++.+..+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 346889999999999999999999988887777654
No 157
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.87 E-value=0.11 Score=51.28 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHH-hcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~-~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+...+.+..++ ..++..+.++.+|.|+|||..+-.++..+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344445555555 44433458899999999998877776643
No 158
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.76 E-value=0.034 Score=60.38 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=54.7
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH----hc---CCcEEEEEeChHHHHHHHHHHHHhhCCC--
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ-- 95 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~----~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~-- 95 (496)
.|.|-|.+++.. .. +..+|.++.|+|||.+.+.-+. .. ..++|+|+.|...+.+..+.+....+..
T Consensus 2 ~L~~~Q~~av~~--~~---~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~ 76 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VT---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEA 76 (673)
T ss_dssp CCCHHHHHHHHC--CS---SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTT
T ss_pred CCCHHHHHHHhC--CC---CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccc
Confidence 578999999984 12 3788999999999988654332 21 2479999999999999999998875422
Q ss_pred -CCcEEEEcC
Q 010991 96 -DDQICRFTS 104 (496)
Q Consensus 96 -~~~v~~~~g 104 (496)
...|..+++
T Consensus 77 ~~~~v~Tfhs 86 (673)
T 1uaa_A 77 RGLMISTFHT 86 (673)
T ss_dssp TTSEEEEHHH
T ss_pred cCCEEEeHHH
Confidence 244555554
No 159
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.074 Score=54.49 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeCh
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~ 78 (496)
..++.++.+|+|+|||+.+-+++...+.+++.+..+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 4568888999999999999999998888877776543
No 160
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.66 E-value=0.18 Score=49.59 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+...+.+..++..++-.+.++.+|.|+|||..+-.++..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555566666643348999999999999888777664
No 161
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.026 Score=57.36 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
..++.++.+|+|+|||+.|-+++...+.+++.+..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 346889999999999999999999988888777654
No 162
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.60 E-value=0.049 Score=52.96 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=24.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
.+.+|.+|+|+|||.++-++.... ..+++.+-
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 589999999999999987777654 34555543
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.53 E-value=0.1 Score=54.71 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHHhc-----------------CCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 26 PRPYQEKSLSKMFGN-----------------GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 26 lr~yQ~~al~~~~~~-----------------~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
-++.+.+.+..|+.. +..+..+|.+|+|+|||.++-+++..++.+++.+-.+
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 356677777777653 1235789999999999999999988887666665443
No 164
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.48 E-value=0.14 Score=57.05 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|+...+.+..++..+...+.+|++|+|+|||.++-.++..+
T Consensus 175 r~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44444444445555555689999999999999877776554
No 165
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.16 E-value=0.15 Score=47.14 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=37.6
Q ss_pred HHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHH
Q 010991 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
++.++.++ .+.-.+|.+|+|+|||..++.++.. .+.+++++..... ..++.+.+..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHT
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHH
Confidence 45555543 2346788899999999987766543 4568888876543 4666666554
No 166
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.77 E-value=0.078 Score=51.15 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=23.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
..++.+|+|+|||.++-+++... ..+++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 68999999999999987777665 23455443
No 167
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.61 E-value=0.19 Score=45.36 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=64.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHH-HHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQW-AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw-~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiIt 119 (496)
+..++..+.|.|||-+|+.++.+ .+.+|+|+--.+.-...= ..-+..+ + +.....+.. + ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~-----v~~~~~g~g--f------~~~ 94 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-G-----VEFQVMATG--F------TWE 94 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-T-----CEEEECCTT--C------CCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-C-----cEEEEcccc--c------ccC
Confidence 57888899999999998888654 467999985433100000 0112221 1 222211111 1 011
Q ss_pred chHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCc------ccCchHHHHHHHhccCccEEEEeecC
Q 010991 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVH------VVPAHMFRKVISLTKSHCKLGLTATL 181 (496)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH------~~~~~~~~~~l~~l~~~~~L~LTATp 181 (496)
+.+.-..............+.+...++++||+||.= .+..+..-.++..-+...-+.+||--
T Consensus 95 ~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 95 TQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG 162 (196)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC
Confidence 211000000000123344556666789999999993 34444444466555555667888764
No 168
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.53 E-value=0.12 Score=56.55 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh----c---CCcEEEEEeChHHHHHHHHHHHHhhCC--C
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----I---KKSCLCLATNAVSVDQWAFQFKLWSTI--Q 95 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~----~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~--~ 95 (496)
.|.|-|.+++.. .. +..+|.++.|||||.+.+.-+.. . ..++|+|+.|...+.+..+.+....+. .
T Consensus 11 ~Ln~~Q~~av~~--~~---g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~ 85 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TE---GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAE 85 (724)
T ss_dssp TSCHHHHHHHHC--CS---SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGT
T ss_pred hCCHHHHHHHhC--CC---CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccccc
Confidence 588999999984 22 47899999999999885543332 1 247999999999999999988876532 2
Q ss_pred CCcEEEEcC
Q 010991 96 DDQICRFTS 104 (496)
Q Consensus 96 ~~~v~~~~g 104 (496)
...|+.|++
T Consensus 86 ~~~v~Tfhs 94 (724)
T 1pjr_A 86 DVWISTFHS 94 (724)
T ss_dssp TSEEEEHHH
T ss_pred CcEEeeHHH
Confidence 234555544
No 169
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.27 E-value=0.12 Score=56.86 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
++.+.+.+..++......+.+|.+|+|+|||.++-.++..
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 5556666666666555568999999999999887766654
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.26 E-value=0.2 Score=51.80 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=26.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
++.+|.+|+|+|||..+-+++...+.+++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 56889999999999998888877776666554
No 171
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.15 E-value=0.41 Score=44.01 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh--c-------CCcEEEEEeCh
Q 010991 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--I-------KKSCLCLATNA 78 (496)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~--~-------~~~~LIl~P~~ 78 (496)
.++.++.++ .+.-..|.+|+|+|||..+..++.. . ..+++++....
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 566677543 3346788899999999998887764 2 34677776543
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.73 E-value=0.76 Score=48.98 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+.+...+..+ ...+|.+|+|+|||..+-+++...
T Consensus 51 ~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 51 EVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 3344445554 489999999999999987777655
No 173
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.56 E-value=0.068 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+.++.+|+|+|||.++-+++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999987777654
No 174
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.45 E-value=0.49 Score=47.29 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHHHH-h----c--CCCcceEE--EeCCCCChHHHHHHHHHhc
Q 010991 24 AQPRPYQEKSLSKMF-G----N--GRARSGII--VLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~-~----~--~~~~~~il--~~~tG~GKTl~~i~~~~~~ 67 (496)
+.=|..+.+.+..++ . + ...+..+| .+|.|+|||..+-.++...
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 444788888887777 3 2 23346777 7999999999877766543
No 175
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.43 E-value=0.21 Score=54.86 Aligned_cols=30 Identities=27% Similarity=0.260 Sum_probs=24.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
+.++.+|+|+|||.++-+++..++.+++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence 689999999999999888887776554443
No 176
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.41 E-value=0.58 Score=46.42 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChH
Q 010991 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (496)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~ 79 (496)
..++.++. +| .+.-.+|.+++|+|||..++.++.. .+.+++++.....
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46777776 43 3346788899999999998877754 3568988887443
No 177
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.39 E-value=0.42 Score=47.58 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=37.3
Q ss_pred HHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHH
Q 010991 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQW 84 (496)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw 84 (496)
..++.++. +| .+.-.+|.+++|+|||..++.++.. .+.+++++..-.. ..+|
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s-~~~~ 117 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA-LDPV 117 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC-hhHH
Confidence 46777776 43 3346788899999999998877754 3568888887654 3455
No 178
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.78 E-value=0.56 Score=46.36 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChH
Q 010991 31 EKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (496)
Q Consensus 31 ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~ 79 (496)
...++.++. ++ .+.-.+|.+|+|+|||..++.++.. .+.+++++.....
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 346777787 44 3346788899999999998777654 3568888876543
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.68 E-value=2.2 Score=38.45 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=34.8
Q ss_pred HHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHH
Q 010991 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
+++.++.++ .+.-.+|.+|+|+|||..+..++.. ...+++++..... ..+....+..
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~ 72 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAKQ 72 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHHH
Confidence 455555432 2346778899999999886665533 3567888775432 3444444443
No 180
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.61 E-value=0.74 Score=45.62 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=36.0
Q ss_pred HHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHH
Q 010991 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVS 80 (496)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L 80 (496)
..++.++. +| .+.-.+|.+|+|+|||..++.++.. .+++++++.+...+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 57888887 54 3345677899999999988777655 35688888876543
No 181
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.41 E-value=0.12 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=17.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
...+|.+|+|+|||..+-+++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999876555543
No 182
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.29 E-value=0.34 Score=47.82 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh--c-------CCcEEEEEeCh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--I-------KKSCLCLATNA 78 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~--~-------~~~~LIl~P~~ 78 (496)
..++.++.++ .+.-.+|.+|+|+|||..++.++.. . +.+++++....
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4567777644 2345678899999999999888875 2 45788888654
No 183
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.02 E-value=1.6 Score=44.51 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHH-hhCCCC
Q 010991 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKL-WSTIQD 96 (496)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~-~~~~~~ 96 (496)
..++.++.+- .+.-.+|++++|+|||..++.++.. .+.+++++..--. ..|+...+.. ..+++.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~ 257 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDM 257 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCT
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCH
Confidence 3566677332 2345788899999999988777654 2458998877543 5666666532 334443
No 184
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.93 E-value=0.41 Score=52.61 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=27.7
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.++.++.+|+|+|||..+=+++..++.+++.|..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 4678999999999999998888888777665544
No 185
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.90 E-value=0.17 Score=51.57 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=31.5
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeCh
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~ 78 (496)
..++.++.+|+|+|||+.+-+++...+.+++.+..+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 3568899999999999999999999988888777643
No 186
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.69 E-value=0.98 Score=46.25 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=36.6
Q ss_pred HHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHH
Q 010991 33 SLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 33 al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
.++.++.+- .+.-.+|++++|+|||..++.++.. .+.+++++..--. ..|+...+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHH
Confidence 566666321 2346788899999999988776654 2458999886543 45555554
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.59 E-value=1.1 Score=45.48 Aligned_cols=32 Identities=19% Similarity=-0.040 Sum_probs=22.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
.-.++++++|+|||-++..++.. .++++++++
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34667799999999886665543 356777766
No 188
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.42 E-value=2.2 Score=43.44 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=57.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE--eChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA--TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~--P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiI 118 (496)
.-.++++++|+|||-++..++..+ +.++++++ |.+.-. .+++..|....+ +.++.....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa---~eqL~~~~~~~g--vpv~~~~~~----------- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGA---YHQLRQLLDRYH--IEVFGNPQE----------- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHH---HHHHHHHHGGGT--CEEECCTTC-----------
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH---HHHHHHHHHhcC--CcEEecCCC-----------
Confidence 456778999999999876666443 55777766 333222 334445543221 222211110
Q ss_pred EchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCch--H---HHHHHHhccCc-cEEEEeecC
Q 010991 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--M---FRKVISLTKSH-CKLGLTATL 181 (496)
Q Consensus 119 tT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~---~~~~l~~l~~~-~~L~LTATp 181 (496)
..+..+. ...+..+....+++||+|.+=+.... . .+.+.....+. ..+.+.||-
T Consensus 165 ~dp~~i~---------~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 KDAIKLA---------KEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp CCHHHHH---------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CCHHHHH---------HHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 0111111 12234444467999999999766532 2 23333333333 345566664
No 189
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.39 E-value=0.31 Score=49.57 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=30.5
Q ss_pred CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
..++.++.+|+|+|||..+-+++...+.+++.+..+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 446789999999999999999999988888777654
No 190
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=89.72 E-value=3.7 Score=45.39 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC
Q 010991 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289 (496)
Q Consensus 255 ~l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~ 289 (496)
+++.+...|. .|..|||+|.+++..+.++..|.
T Consensus 432 Iv~eI~~~~~--~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 432 VVEEIAEKYE--RGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHHH--HTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCCEEEEeCCHHHHHHHHHHHh
Confidence 4566666663 68899999999999998888876
No 191
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.98 E-value=0.18 Score=55.41 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=28.5
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.++.++.+|+|+|||+.+-+++...+.+++.+..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCH
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEecc
Confidence 4578999999999999999999988887776543
No 192
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=88.88 E-value=1.2 Score=46.83 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=39.7
Q ss_pred HHHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcC-CC-eEEcCCCHHHHHHHHHHHhcC
Q 010991 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-KP-MIYGATSHVERTKILQAFKCS 312 (496)
Q Consensus 256 l~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~-~~-~i~G~~~~~eR~~il~~F~~~ 312 (496)
.+.|.+... ..+.++|||+.+...++.+++.|. .+ +++|.. .+|.+++++|+.+
T Consensus 373 ~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~--~~~~~~l~~f~~~ 428 (540)
T 2vl7_A 373 SILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSGIPVIEENKK--TRHEEVLELMKTG 428 (540)
T ss_dssp HHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTTSCEEESTTT--CCHHHHHHHHHTS
T ss_pred HHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhccCceEecCCC--CcHHHHHHHHhcC
Confidence 344444444 456699999999999999999986 33 345554 4788999999875
No 193
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.77 E-value=0.57 Score=52.18 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=22.5
Q ss_pred HhcCCccEEEEcCCcccCchHHHHHHHhcc
Q 010991 141 IRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (496)
Q Consensus 141 l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~ 170 (496)
+.....++|+|||++.+....+..++..+.
T Consensus 656 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~ 685 (854)
T 1qvr_A 656 VRRRPYSVILFDEIEKAHPDVFNILLQILD 685 (854)
T ss_dssp HHHCSSEEEEESSGGGSCHHHHHHHHHHHT
T ss_pred HHhCCCeEEEEecccccCHHHHHHHHHHhc
Confidence 334668899999999998776666666554
No 194
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.65 E-value=2.2 Score=41.42 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHHHHHh----cC-CCcceEEEeCCCCChHHHHHHHHHhc-----CCcEEEEEeChHH
Q 010991 32 KSLSKMFG----NG-RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (496)
Q Consensus 32 ~al~~~~~----~~-~~~~~il~~~tG~GKTl~~i~~~~~~-----~~~~LIl~P~~~L 80 (496)
..++.++. +| ..+...|.+|+|+|||..++.++... +.+++++.+--++
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 45677787 55 22356678999999999987776543 5689998876654
No 195
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.54 E-value=0.65 Score=53.42 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=58.4
Q ss_pred eEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcc---c--------------
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK---E-------------- 108 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~---~-------------- 108 (496)
-.+.+-+|+|||++...++....+|+|||||+...+.||+++|+.|+ +..|..|-+-.. +
T Consensus 20 ~~l~G~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~el~~f~---~~~V~~fP~~~~~~y~~~~p~~~i~~~Rl~ 96 (1151)
T 2eyq_A 20 RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMNLADWETLPYDSFSPHQDIISSRLS 96 (1151)
T ss_dssp CCBCCCCTTHHHHHHHHHHHSSSSEEEEEESSHHHHHHHHHHHGGGC---SSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHHHhhCCCEEEEeCCHHHHHHHHHHHHhhc---CCcEEEecccccCcccccCCChHHHHHHHH
Confidence 46778899999999888887778899999999999999999999884 234554433200 0
Q ss_pred ---cc-cCCCcEEEEchHHhhcc
Q 010991 109 ---RF-RGNAGVVVTTYNMVAFG 127 (496)
Q Consensus 109 ---~~-~~~~~IiItT~~~l~~~ 127 (496)
.+ .+..+|+|+|...+...
T Consensus 97 ~L~~L~~~~~~viV~~~~al~~~ 119 (1151)
T 2eyq_A 97 TLYQLPTMQRGVLIVPVNTLMQR 119 (1151)
T ss_dssp HHHHGGGCCSEEEEEEHHHHTBB
T ss_pred HHHHHHhCCCCEEEEeHHHHhcc
Confidence 01 23457999998887654
No 196
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.49 E-value=0.76 Score=43.50 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=25.0
Q ss_pred HHHHHHhcC-C-CcceEEEeCCCCChHHHHHHHHHh
Q 010991 33 SLSKMFGNG-R-ARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 33 al~~~~~~~-~-~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
++..|+.+. . ....++.+|+|+|||..+.+++..
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 455566654 2 235778899999999999888864
No 197
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.48 E-value=1.6 Score=52.50 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=35.3
Q ss_pred HHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeCh
Q 010991 33 SLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (496)
Q Consensus 33 al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~ 78 (496)
.++.++. ++ ++++.+|.+|+|+|||..++.++.. .+.+++++...-
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 4777777 43 5568999999999999998777644 456888887654
No 198
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.38 E-value=0.75 Score=43.86 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=27.4
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
..+.++.+|+|+|||.++-.++..+..+++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4588999999999999988888777766665544
No 199
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=87.59 E-value=0.62 Score=54.06 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=48.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh-c--------CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I--------KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~-~--------~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..++.|-|.+++..- + ++.+|.+..|||||.+.+.-+.. + ..++|+|++|...+...++.+...
T Consensus 8 ~~~~t~eQ~~~i~~~--~---~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--G---QDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp --CCCHHHHHHHHCC--S---SCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--C---CCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 357899999999842 2 48899999999999886543322 1 137999999999999888888764
No 200
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.04 E-value=0.48 Score=47.09 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
.+.++.+|+|+|||.++-+++..++.+++.+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 4789999999999999988888887776554
No 201
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.92 E-value=1.2 Score=39.58 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=23.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
.+.+|.+|+|+|||..+.+++... +.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 578999999999999977766554 34555543
No 202
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.66 E-value=1.3 Score=43.12 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeChHH-HHHHHHHHHH
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVS-VDQWAFQFKL 90 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~~L-~~Qw~~e~~~ 90 (496)
..++.++.++ .+.-.+|++|+|+|||..++.++... +.+++++.....+ ..+..+.+.+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566677543 33467888999999999998888764 4578888765432 3444433444
No 203
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.59 E-value=0.68 Score=42.56 Aligned_cols=56 Identities=7% Similarity=0.149 Sum_probs=37.8
Q ss_pred HHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh----cCCcEEEEEeChHHHHHHHHHHHH
Q 010991 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
++.++.+| .+.-.+|++++|+|||..++.++.. .+.++++++..-. ..+..+.+..
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHT
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHH
Confidence 44456543 3346788899999999988776543 3568888876543 5666666654
No 204
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.29 E-value=1.5 Score=44.13 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeCh
Q 010991 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (496)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~ 78 (496)
.++.++.++ .+.-..|++|.|+|||..+..++... ..+++++....
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 566667554 33467788999999998887655332 24588877543
No 205
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.11 E-value=7 Score=35.88 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=23.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
-+.++..+.|.|||..++.++.. .+.+++++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35778899999999998777654 345665443
No 206
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.75 E-value=1.1 Score=40.34 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChH-HHHHHHHHH
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV-SVDQWAFQF 88 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~-L~~Qw~~e~ 88 (496)
.+++.++.++ .+.-.+|.+|+|+|||..+..++...+.+++++..... -..+|.+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHH
Confidence 3567676533 23456888999999999887777655567888775431 234454433
No 207
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.39 E-value=0.66 Score=42.17 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCC-CcceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
...+..++.+-. .+..++.+|+|+|||..+.+++..+.++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 455666666532 2357778999999999998887765543
No 208
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.36 E-value=0.78 Score=45.34 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=28.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
.+.++.+|+|+|||.++-+++..++.+++.+-.+
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 5789999999999999999988888777766543
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.29 E-value=0.74 Score=42.91 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=24.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
.+.+|.+|+|+|||..+-+++...+.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 4688999999999999888877766665444
No 210
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.20 E-value=0.42 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
-.+|++|||+|||-+++.++..++.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCC
Confidence 5788999999999999999987753
No 211
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.09 E-value=0.55 Score=45.79 Aligned_cols=41 Identities=5% Similarity=-0.173 Sum_probs=29.5
Q ss_pred cHHHHHHHHHH----HhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKM----FGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~----~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|.-|...+... +.++.+.+.+|.+|+|+|||.++-.++..+
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555543 344566788999999999999987777655
No 212
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.80 E-value=0.87 Score=43.37 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=26.7
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.++.+|.+|+|+|||.++-+++.....+++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 3578999999999999998888877666555443
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.67 E-value=0.92 Score=43.89 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=24.2
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEE
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~ 75 (496)
..+.+|.+|+|+|||..+.+++..+ +.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3588999999999999977766433 35666543
No 214
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.65 E-value=1.2 Score=43.20 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
+...+.+...+..+ ++.++.+|+|+|||..+-+++..++.++..+.
T Consensus 33 ~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 33 KYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp HHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 33344444344433 48999999999999999888888877765544
No 215
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.18 E-value=0.97 Score=39.58 Aligned_cols=29 Identities=28% Similarity=0.225 Sum_probs=23.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~L 72 (496)
...++.+++|+|||-++-.++..++-+++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 36889999999999999888887765543
No 216
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=82.73 E-value=1.3 Score=38.34 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=24.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LI 73 (496)
-.+|.+++|+|||-++-.++..++.+++.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 57888999999999998888888766554
No 217
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.63 E-value=1.5 Score=45.07 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
++...+.+..++......+.+|.+|+|+|||.++-.++..+
T Consensus 185 r~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 55555556666665555689999999999999987777654
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.51 E-value=1.2 Score=45.72 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=26.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC--CcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~P 76 (496)
++.++.+|+|+|||..+-+++..++ .+++.+..
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence 5799999999999999998888876 45555443
No 219
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.33 E-value=2.5 Score=40.78 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------------C----CcEEEEEeChHH-HHHHHHHHH
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------------K----KSCLCLATNAVS-VDQWAFQFK 89 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------------~----~~~LIl~P~~~L-~~Qw~~e~~ 89 (496)
..++.++.++ .+.-.+|.+++|+|||..++.++... + .+++++..-..+ ..+..+.+.
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4677777554 33467888999999999988887652 2 578888765432 344444444
Q ss_pred H
Q 010991 90 L 90 (496)
Q Consensus 90 ~ 90 (496)
+
T Consensus 165 ~ 165 (322)
T 2i1q_A 165 H 165 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 220
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.83 E-value=1 Score=43.69 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-.+|++|||+|||-++..++...+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 467889999999999999988765
No 221
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.53 E-value=0.97 Score=43.87 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=24.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeCh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~ 78 (496)
-.+|++|||+|||-++..++...+ ..||..-+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT--EEEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc--cceeecCc
Confidence 467889999999999999988764 34444433
No 222
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.28 E-value=3.3 Score=49.22 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=55.6
Q ss_pred HHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCc
Q 010991 33 SLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS 106 (496)
Q Consensus 33 al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~ 106 (496)
.++.++. +| ++...+|.+|+|+|||..++.++.. .+.+++++.---. ..|.. . +..+++..+
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees-~~ql~--A-~~lGvd~~~-------- 786 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY--A-RKLGVDIDN-------- 786 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC-CCHHH--H-HHTTCCGGG--------
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch-HHHHH--H-HHcCCChhh--------
Confidence 4555555 33 3456788899999999998877654 3457888765443 34432 2 223433211
Q ss_pred cccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 107 KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 107 ~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+.+.....+... .......+....+++||||+.+.+.
T Consensus 787 ---------L~i~~~~~leei------~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 787 ---------LLCSQPDTGEQA------LEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp ---------CEEECCSSHHHH------HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---------eEEecCCcHHHH------HHHHHHHHHccCCCEEEEechhhhc
Confidence 222222211111 1111122234689999999999887
No 223
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.67 E-value=1.3 Score=41.33 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=21.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
-.+|++|+|+|||-++..++...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 35789999999999998888877643
No 224
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=79.40 E-value=1.8 Score=44.14 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=28.5
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
.++.++.+|+|+|||..+-+++..++.+++.+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3578999999999999999999888877776654
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.91 E-value=4 Score=48.52 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=63.6
Q ss_pred HHHHHHHHhc-C--CCcceEEEeCCCCChHHHHHHHH---HhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcC
Q 010991 31 EKSLSKMFGN-G--RARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (496)
Q Consensus 31 ~~al~~~~~~-~--~~~~~il~~~tG~GKTl~~i~~~---~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g 104 (496)
..+++.++.. | +++...|.+|.|+|||..++.++ +..++.++++.+--+|-..+ ++++ ++.-.+
T Consensus 1416 ~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~-Gv~~~~------ 1485 (1706)
T 3cmw_A 1416 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKL-GVDIDN------ 1485 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHT-TCCGGG------
T ss_pred CHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHc-CCCHHH------
Confidence 3466777774 3 44557788999999999987776 44678999999877665544 4443 443222
Q ss_pred CccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 105 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 105 ~~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
++++-|+.--.. ..-....+.+..+++||+|.+--+.
T Consensus 1486 -----------l~~~~p~~~e~~------l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1486 -----------LLCSQPDTGEQA------LEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp -----------CEEECCSSHHHH------HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -----------eEEeCCCcHHHH------HHHHHHHHHcCCCCEEEEccHHhCC
Confidence 444444321111 1122345556789999999987665
No 226
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.74 E-value=1.6 Score=38.76 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=31.5
Q ss_pred eEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
.+|.+++|||||.-+..++.. +.+++++++....-..|.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 468899999999999888877 778999999765455566665554
No 227
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.47 E-value=1.3 Score=43.16 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
..+|++|||+|||-++..++..++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578899999999999999988776
No 228
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=78.45 E-value=1.8 Score=38.57 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
...+|.+++|+|||-++-.++..++.++
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 4788999999999999988888776554
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.40 E-value=0.54 Score=44.09 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=23.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LI 73 (496)
++.+|.+|+|+|||..+-+++.....+++.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 468899999999999988888776655443
No 230
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=78.11 E-value=4.8 Score=38.83 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=38.5
Q ss_pred HHHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHH
Q 010991 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..++.++.+- .+.-.+|++++|+|||..++.++... +.++++++.-- -..|+...+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~ 117 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIV 117 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHH
Confidence 4566666331 23357888999999998887776543 46888888653 35666666554
No 231
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=77.59 E-value=13 Score=35.44 Aligned_cols=31 Identities=23% Similarity=0.122 Sum_probs=21.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
-..++++.|+|||-++..++.. .+++++++-
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4556799999999886555543 356777765
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.37 E-value=3 Score=39.38 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=23.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
++.+|.+|+|+|||..+-+++...+.+.+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 3588999999999998877776665544433
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.13 E-value=2.4 Score=39.20 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
++.+|.+|+|+|||..+-+++.....+.+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 35789999999999988777777665555443
No 234
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.35 E-value=2.2 Score=37.07 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=22.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
...+|.+++|+|||.++-.++..++.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 4688999999999999888887776443
No 235
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=75.37 E-value=3.5 Score=41.64 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=29.1
Q ss_pred cceEEEeCCCCChHHHHHHHH---HhcCCcEEEEEeChHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVD 82 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~---~~~~~~~LIl~P~~~L~~ 82 (496)
.+.+|.++||+|||...-.++ ...+.+++|+=|..++..
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 488999999999998753333 334668888889887643
No 236
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.31 E-value=6.6 Score=47.43 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=58.0
Q ss_pred HHHHHHHh-cC--CCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010991 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (496)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~ 105 (496)
..++.++. +| ++.-.+|.+|+|+|||..++.++... +.+++++..--. ..|.+ ..+ ++++..++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s-~~~~~--a~~-lGvd~~~L------ 438 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY--ARK-LGVDIDNL------ 438 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC-CCHHH--HHH-TTCCTTTC------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCC-HHHHH--HHH-cCCCHHHe------
Confidence 46777776 33 33567888999999999988887654 458888876544 23332 222 34433222
Q ss_pred ccccccCCCcEEEEchHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccC
Q 010991 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (496)
Q Consensus 106 ~~~~~~~~~~IiItT~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (496)
+|..+..+... .......+....+++||||..+.+.
T Consensus 439 -----------~I~~~~~~e~i------l~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 439 -----------LCSQPDTGEQA------LEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp -----------EEECCSSHHHH------HHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred -----------EEeCCCCHHHH------HHHHHHHHHhcCCcEEEECCHHHhh
Confidence 22222111100 0111122334689999999999876
No 237
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.21 E-value=1.7 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=20.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...+|.+|||+|||-.++.++....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4678899999999998888877643
No 238
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.15 E-value=2.3 Score=36.47 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~L 72 (496)
.+.+|.+++|+|||-++-.++..++-+++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 37789999999999999888887776543
No 239
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=75.10 E-value=1.8 Score=42.42 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-.+|++|||+|||-++..++..++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 567899999999999999888876
No 240
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.98 E-value=2.3 Score=36.31 Aligned_cols=26 Identities=23% Similarity=0.023 Sum_probs=21.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+|.+++|+|||-++-.++..++-+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 46789999999999888887776644
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=74.70 E-value=14 Score=35.32 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=22.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P 76 (496)
-..++++.|+|||-++..++.. .+++++++.-
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3556789999999876655543 3567777664
No 242
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=74.61 E-value=2.3 Score=36.21 Aligned_cols=26 Identities=19% Similarity=-0.027 Sum_probs=20.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
-.+|.+++|+|||-++-.+ ...+-++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~ 28 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKV 28 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcE
Confidence 4578899999999988777 6665553
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=74.18 E-value=3.2 Score=39.09 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=24.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
+.+|.+|+|+|||..+-+++.....+.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 5789999999999988777777765555543
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.67 E-value=3.1 Score=45.48 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
++...+.+..++......+.++.+|+|+|||.++-.++..+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 55555566666665555689999999999999988777664
No 245
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.45 E-value=1.9 Score=43.31 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-.+|++|||+|||-++..++...+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 467889999999999988888765
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=72.88 E-value=21 Score=36.00 Aligned_cols=31 Identities=23% Similarity=0.137 Sum_probs=22.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
-..++++.|+|||-++..++..+ +++++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 45667999999998876665443 45777766
No 247
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=72.75 E-value=3.1 Score=36.17 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+|.+++|+|||-++-.++..++-+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 57889999999999998888877654
No 248
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=72.20 E-value=2.8 Score=36.74 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
...+|.+++|+|||-++-.++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999998888777
No 249
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=72.11 E-value=2.8 Score=36.23 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+|.+++|+|||-++-.++..++-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 57889999999999988888777643
No 250
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=71.95 E-value=3.4 Score=36.11 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=21.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
...+|.+++|+|||-++-.++..++-+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 357788999999999988887776544
No 251
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.63 E-value=6.6 Score=39.59 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 25 ~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
.+.+-+...+..++.. .++..+|++|||+|||-..-+++..
T Consensus 150 g~~~~~~~~L~~l~~~-~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKR-PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp CCCHHHHHHHHHHHTS-SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3456677788877642 2245678899999999765444443
No 252
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=71.43 E-value=1.7 Score=42.38 Aligned_cols=32 Identities=9% Similarity=-0.065 Sum_probs=24.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
..+|.+|+|+|||..+..++...+.+++++.-
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 46888999999999988887664455555544
No 253
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=71.09 E-value=3.5 Score=37.00 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=21.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+|.+++|+|||-++-.++...+-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 36789999999999988888777644
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=70.80 E-value=3.8 Score=35.10 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
..+|.+++|+|||-++-.++..++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6788999999999888777776653
No 255
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=70.75 E-value=3.8 Score=42.41 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=26.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P 76 (496)
++.+|.+|+|+|||..+-+++.....+++.+..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 458999999999999988888777766665544
No 256
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=70.68 E-value=17 Score=34.82 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=14.7
Q ss_pred ceEEEeCCCCChHHHHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~ 64 (496)
-..|++|.|+|||-.+-.++
T Consensus 92 ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45577999999997754443
No 257
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=70.67 E-value=9.7 Score=37.20 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=38.0
Q ss_pred HHHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHH
Q 010991 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
..++.++.+- .+.-.+|++++|+|||..++.++.. .+.++++++.--. ..|....+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHH
Confidence 4566666532 2235778899999999988777654 4678998887543 55655554
No 258
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.46 E-value=4.8 Score=40.99 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=37.4
Q ss_pred HHHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEeChHHHHHHHHHHH
Q 010991 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFK 89 (496)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P~~~L~~Qw~~e~~ 89 (496)
..++.++.+- .+.-.+|++++|+|||..++.++... +.++++++.-- ...|+...+.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~ 245 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLI 245 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHH
Confidence 3566666432 23457888999999999887776543 56888887543 2455555544
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.44 E-value=2.9 Score=37.70 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=22.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
...+|.+++|+|||-++-.++..++-+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCce
Confidence 357888999999999988888877643
No 260
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=70.13 E-value=3.7 Score=35.96 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=22.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
...+|.+++|+|||-++-.++..++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 367888999999999988888777643
No 261
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=69.82 E-value=6.4 Score=39.16 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=50.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC---CcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~---~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT 120 (496)
.+.++.+++|+|||.++-.+..... ++++ .+.-.++..+..+. ..+|... +.|+|.... .
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv-~v~~~~~~~~~~~~--elfg~~~---g~~tga~~~-----------~ 223 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFV-ALNVASIPRDIFEA--ELFGYEK---GAFTGAVSS-----------K 223 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEE-EEETTTSCHHHHHH--HHHCBCT---TSSTTCCSC-----------B
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeE-EEecCCCCHHHHHH--HhcCCCC---CCCCCcccc-----------c
Confidence 4789999999999988755544432 3444 44444444432211 1223221 112222111 1
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~ 170 (496)
.+.+ ...+-|.+++||++.++.....+++..+.
T Consensus 224 ~g~~-----------------~~a~~gtlfldei~~l~~~~q~~Ll~~l~ 256 (387)
T 1ny5_A 224 EGFF-----------------ELADGGTLFLDEIGELSLEAQAKLLRVIE 256 (387)
T ss_dssp CCHH-----------------HHTTTSEEEEESGGGCCHHHHHHHHHHHH
T ss_pred CCce-----------------eeCCCcEEEEcChhhCCHHHHHHHHHHHh
Confidence 1111 11345899999999999776665665443
No 262
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=69.73 E-value=3.7 Score=37.04 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...+|.+++|+|||-++-.++..++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 36788899999999998888877764
No 263
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=69.63 E-value=3.5 Score=36.89 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=21.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
..+|.+++|+|||-++-.++...+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 28 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPH 28 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 367899999999999888877776443
No 264
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=69.44 E-value=3.4 Score=35.37 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=21.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+|.+++|+|||-++-.++..++-+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 56889999999999988888777644
No 265
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=69.44 E-value=7.1 Score=38.58 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=50.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc--CCcEEEEEeChHHHHH-HHHHHHHhhCCCCCcEEEEcCCccccccCCCcEEEEc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQ-WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~--~~~~LIl~P~~~L~~Q-w~~e~~~~~~~~~~~v~~~~g~~~~~~~~~~~IiItT 120 (496)
...++.+++|+||+.++-.+.... ..+ +|.+.-.++-.. +..++ | |.. -+.|+|.....
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~-fv~vnc~~~~~~~~~~~l--f-g~~---~g~~tga~~~~----------- 214 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGA-FVDLNCASIPQELAESEL--F-GHE---KGAFTGALTRK----------- 214 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSC-EEEEESSSSCTTTHHHHH--H-EEC---SCSSSSCCCCE-----------
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCC-cEEEEcccCChHHHHHHh--c-Ccc---ccccCCccccc-----------
Confidence 478999999999998876655433 234 555554443322 22222 2 211 12233332210
Q ss_pred hHHhhcccCCChhHHHHHHHHhcCCccEEEEcCCcccCchHHHHHHHhcc
Q 010991 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (496)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~l~ 170 (496)
.+.+ + ..+=+.+++||+|.++.....+++..+.
T Consensus 215 ~g~~--------------~---~a~~gtlfldei~~l~~~~Q~~Ll~~l~ 247 (368)
T 3dzd_A 215 KGKL--------------E---LADQGTLFLDEVGELDQRVQAKLLRVLE 247 (368)
T ss_dssp ECHH--------------H---HTTTSEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CChH--------------h---hcCCCeEEecChhhCCHHHHHHHHHHHH
Confidence 0111 1 1244799999999999876666665553
No 266
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.40 E-value=3.6 Score=39.18 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=23.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
.-.+|++|+|+|||-++-.++.......++|.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 35778899999999988888777654444443
No 267
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=68.75 E-value=7.5 Score=38.08 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=32.6
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeCh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~~ 78 (496)
.+++.++.++ .+.-..|++|.|+|||..+..++... +++++++....
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4567777654 33456788999999999887777664 24667776543
No 268
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=68.51 E-value=3.8 Score=35.61 Aligned_cols=25 Identities=12% Similarity=0.000 Sum_probs=20.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
..+|.+++|+|||-++-.++..++.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5678899999999998888777653
No 269
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=68.35 E-value=4 Score=36.65 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=17.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
-.++.+++|+|||..++..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3578899999999998776544
No 270
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=68.27 E-value=4.3 Score=36.02 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=19.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
|..+|++|.|+|||-+.=.++.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 46899999999999776555555443
No 271
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=68.23 E-value=4.3 Score=36.77 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
...+|.+++|+|||-++-.++..++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 367889999999999988888777643
No 272
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=68.17 E-value=4 Score=36.14 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+|.+++|+|||-++-.++..++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57788999999999988888777654
No 273
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=68.02 E-value=5.1 Score=34.79 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=19.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
..+|.+++|+|||-++-.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999998877777654
No 274
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=67.85 E-value=3.8 Score=35.58 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
..++.+++|+|||-++-.++..++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567889999999999888877665
No 275
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=67.44 E-value=7.4 Score=37.36 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
+--|+.+.+.+.. +.. +..+|.+|.|.|||..+-.++.....+++++.
T Consensus 15 ~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 62 (357)
T 2fna_A 15 FFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLD 62 (357)
T ss_dssp SCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred hcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 4458888888887 765 47889999999999988888777666666664
No 276
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=67.38 E-value=4.3 Score=34.58 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=21.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
..+|.+++|+|||-++-.++..++-++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 357889999999999888887776543
No 277
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=67.28 E-value=4.3 Score=37.02 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...++.+++|+|||-++-.++..++-
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36788899999999999888887763
No 278
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=67.19 E-value=5.6 Score=41.30 Aligned_cols=40 Identities=18% Similarity=-0.044 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+-+.+...+...+..+ ...+|++|||+|||-..-+++..+
T Consensus 245 ~~~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp SCHHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 3444555555555555 478999999999996654444433
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=67.18 E-value=4.1 Score=35.51 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
..+|.+++|+|||-++-.++..++-
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5678899999999998777776654
No 280
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=67.13 E-value=4.5 Score=35.86 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=19.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
...+|.+|+|+|||-++-.++..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 467788999999998876666655
No 281
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=66.83 E-value=4.4 Score=35.88 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-.+|.+++|+|||-++-.++..++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678899999999988877776664
No 282
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=66.80 E-value=4.3 Score=35.62 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=20.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
..+|.+++|+|||-++-.++..++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678889999999999888887766
No 283
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.78 E-value=8.3 Score=37.35 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhc-----CCCcceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 28 PYQEKSLSKMFGN-----GRARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 28 ~yQ~~al~~~~~~-----~~~~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
....+.+...+.. ......++.+|+|+|||..+-.++..++.+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3444555554432 122478999999999998877777665543
No 284
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=66.73 E-value=4.6 Score=36.23 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=21.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+|.+++|+|||-++-.++..++-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 36788999999999988888777543
No 285
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=66.50 E-value=5.2 Score=34.85 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=20.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~L 72 (496)
...+|.+|+|+|||-++-.++.......+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i 38 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKV 38 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeE
Confidence 46778899999999876666554433433
No 286
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=66.39 E-value=11 Score=35.42 Aligned_cols=59 Identities=5% Similarity=-0.085 Sum_probs=39.3
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHH---hcCCcEEEEEeChHHHHHHHHHHHHh
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~---~~~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
..++.++.+| ++...+|...+|+|||..++.++. ..+.+++++.-.- -..+....++.|
T Consensus 8 ~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~~ 71 (260)
T 3bs4_A 8 EELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSRF 71 (260)
T ss_dssp HHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHc
Confidence 4577788775 223444555888888877666654 3467888877654 467777777775
No 287
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.21 E-value=3.6 Score=38.20 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=23.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
...++.+++|+|||-++-.++..++..++++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~ 63 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVII 63 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 4577889999999998888887776444443
No 288
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.20 E-value=3.8 Score=39.64 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=22.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
++.+|.+|+|+|||.++-+++.....
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCcc
Confidence 47999999999999998888877653
No 289
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=66.07 E-value=5.8 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
++.+|.+|+|+|||..+-+++....
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4899999999999999888877664
No 290
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=65.98 E-value=5.8 Score=36.95 Aligned_cols=30 Identities=23% Similarity=0.077 Sum_probs=22.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCL 74 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl 74 (496)
-.++++++|+|||-++-.++.. .+.+++++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 5778899999999998777765 44455543
No 291
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=65.97 E-value=3.5 Score=35.69 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=19.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~L 72 (496)
..+|.+++|+|||-++-.++..++.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5778899999999999888888777655
No 292
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=65.89 E-value=4.2 Score=36.66 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=21.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...+|.+++|+|||-++-.++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36788999999999998888887763
No 293
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=65.43 E-value=9.6 Score=34.07 Aligned_cols=46 Identities=26% Similarity=0.391 Sum_probs=30.0
Q ss_pred HHHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHhc---------CCcEEEEEeC
Q 010991 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATN 77 (496)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~~---------~~~~LIl~P~ 77 (496)
..++.++.++ .+.-..|++|.|+|||..+..++... ...++++...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 4566666543 23457788999999998876666532 2346666654
No 294
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=65.28 E-value=9.7 Score=36.44 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
+--|+.+.+.+..++..+ +..+|.+|.|.|||..+-.++...+ ++++.
T Consensus 14 ~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~ 61 (350)
T 2qen_A 14 IFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP--GILID 61 (350)
T ss_dssp SCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS--EEEEE
T ss_pred cCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC--cEEEE
Confidence 455888888888888764 4788999999999998877777663 55543
No 295
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=64.79 E-value=3.7 Score=35.67 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
..+|.+++|+|||-++-.++..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578889999999999888777654
No 296
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=64.52 E-value=5.2 Score=36.45 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=21.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
+-.+|.+|+|+||+-++-.++...+-+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 456678999999999988888777643
No 297
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=64.47 E-value=5.4 Score=35.24 Aligned_cols=26 Identities=15% Similarity=-0.054 Sum_probs=20.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...+|.+++|+|||-++-.++..++-
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 35678899999999988777777653
No 298
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=64.37 E-value=5 Score=36.20 Aligned_cols=25 Identities=24% Similarity=0.107 Sum_probs=20.8
Q ss_pred eEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
.++.+|+|+||+-++-.++...+-+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 5778999999999998888877643
No 299
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=64.08 E-value=6.7 Score=45.09 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.1
Q ss_pred EEEeCCCCChHHHHHHHHHhc------CCcEEEEEeChHHHHHHHHHHHHh
Q 010991 47 IIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~~~~~------~~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
+|.+..|+|||.+.+.-+..+ +.++|+|||... ..+...++...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~ 54 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKT 54 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCC
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHh
Confidence 678889999999865544332 368999999874 55556666543
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=64.02 E-value=5 Score=35.25 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+|.+++|+|||-++-.++..++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 35788999999999888888777653
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=63.05 E-value=4.6 Score=34.67 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=17.7
Q ss_pred ceEEEeCCCCChHHHHHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~ 65 (496)
-.+|.+++|+|||-++-.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 467889999999988877776
No 302
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=62.41 E-value=6.6 Score=34.53 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=23.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC-CcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK-KSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~-~~~LIl 74 (496)
...+|.+++|+|||-++-.++..+. -+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 3577889999999999888888773 345443
No 303
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=62.32 E-value=6.8 Score=34.16 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=18.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-.+|.+|+|+|||-++-.++....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 457889999999988766665443
No 304
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=61.93 E-value=6.3 Score=36.69 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=22.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
...+|.+++|+|||-++-.++..++-+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 488999999999999888887766643
No 305
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=61.53 E-value=7.4 Score=33.93 Aligned_cols=28 Identities=21% Similarity=-0.046 Sum_probs=20.8
Q ss_pred eEEEeCCCCChHHHHHHHHHhc---CCcEEE
Q 010991 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLC 73 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~---~~~~LI 73 (496)
.+|.++.|+|||-++-.++..+ +-+++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4678999999999987777765 555543
No 306
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=60.78 E-value=8.8 Score=40.84 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=41.6
Q ss_pred HHHHHHhhhcCCCeEEEEeccHHHHHHHHHHcCCCe--EEcCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010991 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPM--IYGATSHVERTKILQAFKCSRDLNTIFLS 321 (496)
Q Consensus 257 ~~ll~~~~~~~g~kiIVF~~~~~~~~~l~~~L~~~~--i~G~~~~~eR~~il~~F~~~~~~~vlv~s 321 (496)
+.|.+... ..+..++||+.+...++.+++.|...- ..-+++..+|..++++|+ + .-.+|+.+
T Consensus 438 ~~i~~l~~-~~~g~~lvlF~Sy~~l~~v~~~l~~~~~~~~q~~~~~~~~~ll~~f~-~-~~~vL~~v 501 (620)
T 4a15_A 438 TVIEDIIL-KVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFR-R-DHGTIFAV 501 (620)
T ss_dssp HHHHHHHH-HHCSCEEEEESCHHHHHHHTSSCCSCCEECCTTCCSHHHHHHHHHHT-T-SCCEEEEE
T ss_pred HHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHHHhcchhccCCCChhHHHHHHHHhc-c-CCcEEEEE
Confidence 33444443 335579999999999999999886111 112233568999999999 5 55666664
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=60.21 E-value=6.7 Score=34.83 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=19.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.-.+|++|+|+|||-++-.++....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4678899999999988777766653
No 308
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=60.14 E-value=9.1 Score=32.99 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl 74 (496)
...+|.+++|+|||-++-.++..+ +-+++.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 356788999999998876666654 4455443
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=60.01 E-value=7 Score=33.51 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=19.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...+|.+++|+|||-++-.++..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3567889999999988766665553
No 310
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=60.01 E-value=8.1 Score=48.15 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeCh--HHHHHHHHHHHHh
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA--VSVDQWAFQFKLW 91 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~--~L~~Qw~~e~~~~ 91 (496)
-+..++.++ ++.++++|+|+|||..+-.++.....-.++.++.+ +-..+..+.+...
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~ 1317 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRH 1317 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHH
Confidence 344455555 58999999999999988666666544333333322 2234455555543
No 311
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=59.22 E-value=8.8 Score=33.27 Aligned_cols=28 Identities=11% Similarity=-0.191 Sum_probs=21.1
Q ss_pred eEEEeCCCCChHHHHHHHHHhc---CCcEEE
Q 010991 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLC 73 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~---~~~~LI 73 (496)
.+|.+++|+|||-++-.++..+ +-+++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5688999999999887777765 444443
No 312
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=59.20 E-value=7.2 Score=35.91 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=21.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...+|.+|+|+|||-++-.++...+-
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46888999999999998888877653
No 313
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=59.02 E-value=6.7 Score=35.47 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
..+|.+++|+|||-++-.++..++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578899999999998888777653
No 314
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=58.39 E-value=8.7 Score=39.59 Aligned_cols=55 Identities=11% Similarity=-0.057 Sum_probs=36.5
Q ss_pred HHHHHHhcC-CCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeChHHHHHHHHHH
Q 010991 33 SLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 33 al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
.++.++.+- .+.-.+|++++|+|||..++.++... +.++++++.--. ..|....+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHH
Confidence 355555421 22357788999999999988887653 458888876443 45666554
No 315
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=58.25 E-value=7.5 Score=34.53 Aligned_cols=25 Identities=20% Similarity=-0.001 Sum_probs=19.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...|.+++|||||-++-.++..++-
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567789999999988877776553
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.04 E-value=6.9 Score=34.95 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=19.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.-.+|++|+|+|||-++-.++....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3577889999999988777666553
No 317
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=57.97 E-value=20 Score=35.33 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=46.0
Q ss_pred cCCCeEEEEeccHHHHHHHHHHcC--------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 266 QRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 266 ~~g~kiIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
..+.++||.++++..+..+++.+. +..++|+++..+|....+.+..+ ..+++|+|.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEECH
Confidence 467899999999988777766552 45689999999998888888887 688999887
No 318
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.91 E-value=5.6 Score=39.28 Aligned_cols=21 Identities=33% Similarity=0.238 Sum_probs=16.2
Q ss_pred ceEEEeCCCCChHHH--HHHHHH
Q 010991 45 SGIIVLPCGAGKSLV--GVSAAC 65 (496)
Q Consensus 45 ~~il~~~tG~GKTl~--~i~~~~ 65 (496)
-.+|.+|||+|||.+ ||.++.
T Consensus 27 l~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999988 455433
No 319
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=57.68 E-value=11 Score=35.94 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=22.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHh----cCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~----~~~~~LIl~ 75 (496)
...++++++|+|||-++..++.. .+.+++++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678899999999886555533 344676665
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=57.64 E-value=8.6 Score=33.69 Aligned_cols=23 Identities=26% Similarity=0.023 Sum_probs=18.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
....|.+++|+|||-++-.++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35678899999999888777765
No 321
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=57.38 E-value=9.9 Score=37.64 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=26.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~ 79 (496)
.+.+|++++|+|||...-.++.. .+.+++|+=|..+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 48899999999999875444433 3557777777654
No 322
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=56.66 E-value=8.4 Score=33.46 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=18.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.-.+|++|+|+|||-+.-.++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357788999999998766666544
No 323
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=56.62 E-value=12 Score=38.93 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=24.3
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl 74 (496)
...++.+|+|+|||..+-+++.....+...+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 4688999999999999888777776554444
No 324
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=56.59 E-value=8.4 Score=37.91 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=20.4
Q ss_pred cCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 40 NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 40 ~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.+...+.+|.+++|+|||-++-.++..+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3433458899999999998876665443
No 325
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=56.51 E-value=10 Score=33.85 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=23.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~L 72 (496)
-..|..++|+|||-++-.++..++-+++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 4667789999999999999999987644
No 326
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=56.43 E-value=7.1 Score=42.97 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=25.3
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~ 75 (496)
+.+.+|.+|+|+|||.++-+++...+.+++.+.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 357889999999999988888777766554443
No 327
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=56.31 E-value=20 Score=33.49 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=29.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHh--c-----------CCcEEEEEeChHHHHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR--I-----------KKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~--~-----------~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
.-.+|++|.|+|||..+..++.. . ..+++++...-. ..+....+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~ 89 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHA 89 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHH
Confidence 46788999999999887666532 2 246777665433 3444444444
No 328
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=56.21 E-value=8.9 Score=33.72 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...|.+++|+|||-++-.++..++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567899999999998888777663
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=55.82 E-value=9.3 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.029 Sum_probs=18.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...|.+++|+|||-++-.++. .+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 467889999999988777766 54
No 330
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=55.78 E-value=10 Score=33.46 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=18.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.-.+|.+|+|+|||-++-.++..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467788999999998876666554
No 331
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=55.45 E-value=8.3 Score=34.10 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=18.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
...|.+++|+|||-++-.++. ++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 356889999999987766654 4433
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=54.97 E-value=8.7 Score=34.44 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=19.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...|.+|+|+|||-++-.++..++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567889999999988777776655
No 333
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=54.22 E-value=7.8 Score=32.73 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.5
Q ss_pred ceEEEeCCCCChHHHH
Q 010991 45 SGIIVLPCGAGKSLVG 60 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (496)
-.+|++|+|+|||-+.
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578999999999873
No 334
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=53.88 E-value=13 Score=33.29 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCCcHH-HHHHHHHHHhcCCCcceEEEeCCCCChHHHH
Q 010991 24 AQPRPY-QEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60 (496)
Q Consensus 24 ~~lr~y-Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~ 60 (496)
++++.| |..++..+-.+ .-..|.+|.|+|||-..
T Consensus 5 i~pk~~g~~~~l~~i~~G---e~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTN---TIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHC---SEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCC---CEEEEECCCCCCHHHHH
Confidence 344444 56677765433 26778999999999763
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=53.79 E-value=7.7 Score=33.71 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=22.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl 74 (496)
...++.+++|+|||-++-.++..+ +.++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456788999999998877766554 3445544
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=53.32 E-value=8.8 Score=33.80 Aligned_cols=25 Identities=20% Similarity=-0.094 Sum_probs=20.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
..+|.+++|+|||-++-.++..++.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5678899999999998777776543
No 337
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=53.27 E-value=12 Score=37.78 Aligned_cols=33 Identities=21% Similarity=0.084 Sum_probs=24.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---c-CCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~-~~~~LIl~P 76 (496)
+..+++++.|+|||-++..++.. . +.+++++.-
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 35667799999999987666643 3 667877763
No 338
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=52.63 E-value=24 Score=36.45 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=24.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P 76 (496)
...++++++|+|||-++..++..+ +.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 356778999999998876666443 567888776
No 339
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.55 E-value=11 Score=47.65 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC--hHHHHHHHHHHHH
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN--AVSVDQWAFQFKL 90 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~--~~L~~Qw~~e~~~ 90 (496)
.+..++.++ +..++++|||+|||..+...+....+..++.++- .+...+....+..
T Consensus 1296 ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~ 1353 (3245)
T 3vkg_A 1296 VLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDH 1353 (3245)
T ss_dssp HHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhh
Confidence 455566665 5899999999999977666666554433333332 2223445555543
No 340
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=52.08 E-value=20 Score=39.12 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=45.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHc---------CCCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 267 RGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 267 ~g~kiIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
.|.+++|.++++.-+...++.+ ++..+||+++..+|..+++.+.+| .++++|.|.
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~IvVgT~ 479 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVIGTH 479 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEEECT
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECH
Confidence 4789999999988776666544 256789999999999999999998 889998886
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=51.83 E-value=11 Score=33.58 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=19.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+-.+|++|+|+|||-+.-.++....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4678899999999987766665543
No 342
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=51.79 E-value=13 Score=36.47 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
+...+..+ ...+|++|+|+|||-..-+++...
T Consensus 168 l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 168 LRRAVQLE--RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcC
Confidence 33334444 488999999999996654444433
No 343
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=51.29 E-value=16 Score=34.38 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=28.3
Q ss_pred HHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhc----CCcEEEEEeC
Q 010991 33 SLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATN 77 (496)
Q Consensus 33 al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~----~~~~LIl~P~ 77 (496)
++..+..+ ..+.-.+|++|+|+|||..+..++... +.+++++...
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 35544422 222467788999999998866655432 3378777653
No 344
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=51.26 E-value=15 Score=35.27 Aligned_cols=31 Identities=26% Similarity=0.070 Sum_probs=21.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
-..+++++|+|||-++..++.. .+++++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4567899999999886655543 355676665
No 345
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=49.76 E-value=15 Score=35.52 Aligned_cols=31 Identities=23% Similarity=0.084 Sum_probs=21.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
-..++++.|+|||-++..++.. .+++++++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4567789999999886555533 356777764
No 346
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=49.73 E-value=13 Score=33.05 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...|.+++|+|||.++-.++..++-
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5678899999999998888777763
No 347
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=49.56 E-value=13 Score=33.22 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=17.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...|.+++|+|||-++-.++. ++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-cC
Confidence 567889999999988766655 44
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=49.27 E-value=11 Score=33.14 Aligned_cols=24 Identities=13% Similarity=-0.129 Sum_probs=19.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
...+|.+++|+|||-++-.++..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357788999999999887777654
No 349
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=49.25 E-value=10 Score=35.46 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=15.8
Q ss_pred cceEEEeCCCCChHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~ 64 (496)
....|++|+|+|||-..-.++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 467889999999997644333
No 350
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=49.18 E-value=11 Score=33.00 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=18.2
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.-.+|++|+|+|||-++-.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 356788999999997766665544
No 351
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=48.71 E-value=14 Score=33.51 Aligned_cols=25 Identities=28% Similarity=0.113 Sum_probs=20.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
....|.+++|+|||.++-.++..++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567889999999998877777665
No 352
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=48.47 E-value=15 Score=39.66 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
..|...|+..+.....||.++.|+|||..+=.++
T Consensus 82 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 115 (697)
T 1lkx_A 82 NDAYRSMRQSQENQCVIISGESGAGKTEASKKIM 115 (697)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 3577777776666788899999999998854433
No 353
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=48.24 E-value=12 Score=32.95 Aligned_cols=24 Identities=17% Similarity=-0.072 Sum_probs=19.4
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
...+|.+++|+|||-++-.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 367888999999999887777653
No 354
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=48.13 E-value=10 Score=38.34 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=23.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
...++++++|+|||-++..++..+ +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357788999999998877766543 45777665
No 355
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=47.63 E-value=13 Score=34.06 Aligned_cols=24 Identities=29% Similarity=0.255 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...|.+|+|+|||-++-.++..++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 577889999999999888877765
No 356
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=47.15 E-value=1.1e+02 Score=34.57 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHHhc--CCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 24 AQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 24 ~~lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
+.=|+-..+.+..++.. +..+-..|+++-|.|||-.|..++..
T Consensus 126 ~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 45578888888877742 22345678899999999988776543
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=46.87 E-value=14 Score=31.73 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=15.9
Q ss_pred ceEEEeCCCCChHHHHHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~ 65 (496)
-.+|++|.|+|||.+.-++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 557899999999987544443
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=46.86 E-value=15 Score=33.84 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=21.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
....|.+|+|+|||-++-.++..++-
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35778899999999888888777664
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=46.83 E-value=19 Score=31.76 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=20.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl 74 (496)
-..|.++.|+|||-++-.++..+ +.++.++
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 45677999999998866555443 4455443
No 360
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=46.80 E-value=21 Score=34.37 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=23.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P 76 (496)
-.++....|.|||.++..++.. .+.+|++|--
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4556678999999997766644 4668887753
No 361
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=46.72 E-value=25 Score=36.81 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE----eChHHHHHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA----TNAVSVDQWAFQFKL 90 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~----P~~~L~~Qw~~e~~~ 90 (496)
.++++.++--+++....|.++.|+|||.....++.....-++|++ -.++ +.+..++|.+
T Consensus 220 irvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~~~iGER~~E-v~e~~~~~~e 282 (600)
T 3vr4_A 220 QRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSDVDLVVYVGCGERGNE-MTDVVNEFPE 282 (600)
T ss_dssp CHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSSCSEEEEEEEEECHHH-HHHHHHHTTT
T ss_pred chhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccCCCEEEEEEecccHHH-HHHHHHHHHh
Confidence 367776654455568999999999999998887776655444433 2233 4445555544
No 362
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=46.68 E-value=20 Score=31.78 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=18.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
...+|.+++|+|||-++-.++..+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 466788999999998877666544
No 363
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=46.16 E-value=14 Score=32.53 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=19.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
...++.++.|+|||-+++.++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47888999999999988888774
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=46.11 E-value=14 Score=34.07 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=20.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
...|.+++|+|||-++-.++..++-
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4668899999999988877776653
No 365
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=46.07 E-value=16 Score=41.30 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
=..|...|+..+...+.||.++.|+|||..+=.++
T Consensus 131 A~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im 165 (1052)
T 4anj_A 131 ADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165 (1052)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHH
Confidence 45677778877766789999999999998864443
No 366
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=45.99 E-value=16 Score=39.85 Aligned_cols=34 Identities=24% Similarity=0.109 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
..|...|+..+.....||.++.|+|||..+=.++
T Consensus 128 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 128 DKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 3577777776666788889999999998854433
No 367
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=45.64 E-value=17 Score=39.56 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (496)
..|...|+..+.....||.++.|+|||..+=.+
T Consensus 160 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i 192 (770)
T 1w9i_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 192 (770)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEEecCCCCcchHHHHHH
Confidence 357777777666678889999999999885333
No 368
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=45.59 E-value=12 Score=32.80 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=17.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-..|.+|.|+|||-++-.++...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 56788999999997765555443
No 369
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=45.57 E-value=19 Score=44.98 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHHHHhc-CCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeC
Q 010991 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~ 77 (496)
...+.|.=.+++..++.. .....+++.+|+|+|||.++-.++..++.+++++--+
T Consensus 624 rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~ 679 (2695)
T 4akg_A 624 RLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCD 679 (2695)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETT
T ss_pred cceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECC
Confidence 445667666666654432 1124789999999999999999999998887777543
No 370
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=45.44 E-value=15 Score=31.87 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=16.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
-..|.+|.|+|||-+.=.++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999765555443
No 371
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=45.14 E-value=35 Score=38.91 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=47.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHcC--------CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 266 QRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 266 ~~g~kiIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
..+.++||.++++..+..+++.+. +..+||+++..+|...++.+..+ ..+++|+|.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-~~~IlV~Tp 182 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFST 182 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-CCSEEEEEH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-CCCEEEECH
Confidence 467899999999999888888763 45689999998998999999987 789999887
No 372
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=45.06 E-value=21 Score=32.13 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=24.1
Q ss_pred cceEEEeCCCCChHHHHHHHH--H--hcCCcEEEEEeCh
Q 010991 44 RSGIIVLPCGAGKSLVGVSAA--C--RIKKSCLCLATNA 78 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~--~--~~~~~~LIl~P~~ 78 (496)
.-..|.+|.|+|||...-.++ . .....++++....
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 467788999999998765444 2 3456677766543
No 373
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=44.98 E-value=31 Score=32.73 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=20.3
Q ss_pred eEEEeC-CCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 46 GIIVLP-CGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 46 ~il~~~-tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
..+..+ .|.|||.+++.++.. .+++||+|=
T Consensus 107 I~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 107 LMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 334444 699999997666543 467888774
No 374
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=44.79 E-value=47 Score=28.98 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc--------c-cCCCcEEEEchHH
Q 010991 53 GAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTTYNM 123 (496)
Q Consensus 53 G~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~--------~-~~~~~IiItT~~~ 123 (496)
...|....+.++.....++||.|++..-+..+.+.|... + ..+..++|+.... + .+...|+|+| +.
T Consensus 39 ~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~-g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~~ 113 (191)
T 2p6n_A 39 EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-G---VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DV 113 (191)
T ss_dssp GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHH-T---CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HH
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHc-C---CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-Cc
Confidence 457776666666666779999999999888888888764 3 3577888874421 1 3567899999 44
Q ss_pred hh
Q 010991 124 VA 125 (496)
Q Consensus 124 l~ 125 (496)
+.
T Consensus 114 ~~ 115 (191)
T 2p6n_A 114 AS 115 (191)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 375
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=44.72 E-value=12 Score=36.70 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
.+..+.... ++..+|++|||+|||-..-+++
T Consensus 114 ~l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 114 VFKRVSDVP-RGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp HHHHHHHCS-SEEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHHHhCC-CCEEEEECCCCCCHHHHHHHHH
Confidence 344444332 2467888999999997654443
No 376
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=44.60 E-value=13 Score=33.12 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.6
Q ss_pred ceEEEeCCCCChHHHH
Q 010991 45 SGIIVLPCGAGKSLVG 60 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (496)
-.+|++|+|+|||-+.
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5688999999999873
No 377
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=44.45 E-value=14 Score=32.70 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=16.3
Q ss_pred cceEEEeCCCCChHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~ 65 (496)
+-..|++|+|+|||-+.-.++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3678999999999966544433
No 378
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=44.27 E-value=28 Score=34.81 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~ 65 (496)
+-.-=.++++.++--+++....|++|.|+|||..+..++.
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 3444556777655545556899999999999988755544
No 379
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=44.25 E-value=18 Score=39.43 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
=..|...|+..+.....||.++.|+|||..+=.++
T Consensus 158 A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 158 SDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHH
Confidence 44567777776666788999999999998854333
No 380
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=44.19 E-value=18 Score=39.55 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
..|...|+..+.....||.++.|+|||..+=.++
T Consensus 144 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 177 (795)
T 1w7j_A 144 EEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177 (795)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHH
Confidence 4577777776666788899999999998854433
No 381
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=43.97 E-value=15 Score=38.75 Aligned_cols=24 Identities=17% Similarity=-0.052 Sum_probs=19.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
+.++.+|+|+|||..+-+++....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 799999999999987766655543
No 382
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=43.85 E-value=21 Score=31.80 Aligned_cols=28 Identities=7% Similarity=-0.061 Sum_probs=20.2
Q ss_pred EeCCCCChHHHHHHHHHh---cCCcEEEEEe
Q 010991 49 VLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (496)
Q Consensus 49 ~~~tG~GKTl~~i~~~~~---~~~~~LIl~P 76 (496)
....|.|||.+++.++.. .+.+++++=|
T Consensus 8 s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 8 GTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp ESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 345899999997776643 4678888644
No 383
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=43.58 E-value=25 Score=34.11 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=27.0
Q ss_pred HHHhcCCCcceEEEeCCCCChHHHHHHHHHhc---CCcEEEEEe
Q 010991 36 KMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (496)
Q Consensus 36 ~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~P 76 (496)
.++.+...+-.++..--|.|||.++..++..+ +++||+|--
T Consensus 9 ~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 9 SILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp HHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred HHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34444322345566789999999987776543 567877763
No 384
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=43.13 E-value=15 Score=35.51 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
..+...+..+ ....|++|+|+|||-..-+++..
T Consensus 162 ~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 162 SAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444444 48889999999999654444433
No 385
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=43.13 E-value=14 Score=32.52 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=17.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-..|++++|+|||-++-.++...
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 45688999999997776665544
No 386
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=42.61 E-value=17 Score=34.27 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=18.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...|.+++|+|||-++-.++ .++
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHHH-HCC
Confidence 57788999999998876666 444
No 387
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=42.49 E-value=20 Score=32.50 Aligned_cols=25 Identities=16% Similarity=-0.132 Sum_probs=20.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~ 69 (496)
-.++.++.|+|||-++-.++..+..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4677899999999888777777754
No 388
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=42.19 E-value=14 Score=36.49 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.1
Q ss_pred cceEEEeCCCCChHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~ 64 (496)
...+|++|+|+|||-..-.++
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 467889999999997654444
No 389
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=41.27 E-value=20 Score=35.28 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=12.5
Q ss_pred ceEEEeCCCCChHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (496)
..+.-+.||+|||.+..
T Consensus 107 tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 107 TIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp EEEEEESTTSSHHHHHT
T ss_pred EEEEeCCCCCCccEEeC
Confidence 33444899999998854
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=41.07 E-value=31 Score=30.57 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc
Q 010991 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
|.+.++..+........+++++.|+|||-....++...
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 44555555544434578888999999998877776553
No 391
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=40.77 E-value=18 Score=33.03 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=19.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
...+|.+|.|+|||-++-.++..++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678889999999988777766554
No 392
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=40.73 E-value=19 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (496)
..|...|+..+.....||.++.|+|||..+=.+
T Consensus 157 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i 189 (837)
T 1kk8_A 157 DNAYQNMVTDRENQSCLITGESGAGKTENTKKV 189 (837)
T ss_dssp HHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHH
Confidence 457777777665568888999999999885433
No 393
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=40.72 E-value=40 Score=33.65 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHH
Q 010991 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 26 lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~ 65 (496)
+-.-=.++++.++--+++.++.|.++.|+|||..+..++.
T Consensus 158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 3345567777665445556899999999999988755544
No 394
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=40.59 E-value=12 Score=35.97 Aligned_cols=30 Identities=23% Similarity=0.173 Sum_probs=20.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~LI 73 (496)
....|++|+|+|||-..-.++....+.+++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~~G~I~~ 156 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFLGGSVLS 156 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHTCEEEC
T ss_pred CEEEEECCCCCcHHHHHHHHhhhcCceEEE
Confidence 467789999999997765555444555543
No 395
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=40.56 E-value=21 Score=31.45 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=17.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcC
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
-..|.+|.|+|||-++-.++..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999977655554433
No 396
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=40.36 E-value=1.2e+02 Score=26.12 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHhc--CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc--------c-cCCCcEEEEc
Q 010991 53 GAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTT 120 (496)
Q Consensus 53 G~GKTl~~i~~~~~~--~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~--------~-~~~~~IiItT 120 (496)
...|-...+.++... ..++||.|++..-+....+.+... +..+..++|+.... + .+...|+|+|
T Consensus 29 ~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 457776666666665 468999999999888777777763 24577788864321 1 2567899998
No 397
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=40.34 E-value=25 Score=33.79 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=23.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P 76 (496)
-.+.....|.|||.++..++.. .+++||+|-.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3455578999999997766543 4678888764
No 398
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=40.19 E-value=23 Score=39.95 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (496)
..|+..|+..+.....||.++.|+|||..+=.+
T Consensus 160 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i 192 (1010)
T 1g8x_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 192 (1010)
T ss_dssp HHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHH
Confidence 356777777666668888999999999885333
No 399
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=40.13 E-value=22 Score=32.54 Aligned_cols=27 Identities=19% Similarity=0.039 Sum_probs=21.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
+.-|.+++|+|||.++-.++..++-+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~ 36 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQ 36 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCe
Confidence 456789999999999988888776443
No 400
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=39.95 E-value=7.8 Score=42.65 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.1
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCc
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~ 70 (496)
..+.++.+|+|+|||..+-+++...+.+
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568899999999999987777665543
No 401
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=39.68 E-value=24 Score=33.14 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=18.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-.+|.+++|+|||-++-.++...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46788999999999887777653
No 402
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=39.53 E-value=34 Score=31.96 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHh---cCCcEEEE
Q 010991 51 PCGAGKSLVGVSAACR---IKKSCLCL 74 (496)
Q Consensus 51 ~tG~GKTl~~i~~~~~---~~~~~LIl 74 (496)
--|.|||.+++.++.. .+.+||+|
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 6799999997766643 45677775
No 403
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=39.30 E-value=26 Score=32.08 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=21.1
Q ss_pred EEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 47 IIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
+.....|.|||.+++.++.. .+.+|++|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44567899999997776644 366888775
No 404
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=39.14 E-value=23 Score=39.84 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (496)
..|+..|+..+.....||.++.|+|||..+=.+
T Consensus 134 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i 166 (995)
T 2ycu_A 134 EGAYRSMLQDREDQSILCTGESGAGKTENTKKV 166 (995)
T ss_dssp HHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCchhhHHHH
Confidence 357777777666678889999999999885433
No 405
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=38.97 E-value=17 Score=35.69 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=15.6
Q ss_pred ceEEEeCCCCChHHH--HHHHHH
Q 010991 45 SGIIVLPCGAGKSLV--GVSAAC 65 (496)
Q Consensus 45 ~~il~~~tG~GKTl~--~i~~~~ 65 (496)
-.+|.+|+|+|||-+ ++.++.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999966 444443
No 406
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=38.90 E-value=27 Score=31.88 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=22.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHh--cCCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR--IKKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~--~~~~~LIl~ 75 (496)
-.++....|+|||-.+..++.. .+.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4667789999999887666543 355777766
No 407
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=38.58 E-value=27 Score=33.33 Aligned_cols=31 Identities=29% Similarity=0.112 Sum_probs=20.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
-..+++|+|+|||-..-.++.. ..+++++..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567899999999775444433 345666654
No 408
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=38.50 E-value=17 Score=35.19 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.6
Q ss_pred ceEEEeCCCCChHHHH
Q 010991 45 SGIIVLPCGAGKSLVG 60 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (496)
-.+|++|+|+|||.+.
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578999999999884
No 409
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=38.42 E-value=24 Score=34.95 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=23.4
Q ss_pred CcceEEEeCCCCChHHHHHHHHHhcCCcEEE
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~~~~~~LI 73 (496)
+...+|.+|+|+|||..+-.++....+.++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3467888999999998877776666666554
No 410
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=38.42 E-value=30 Score=36.28 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=24.6
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEe
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P 76 (496)
+-.++.+..|.|||.++..++.. .++++|+|-.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 45667788999999997776543 4678888764
No 411
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=38.22 E-value=40 Score=31.00 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=33.1
Q ss_pred eEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChHHHHHHHHHHHH
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~ 90 (496)
..|.+..|+|||.++-.+....+-+ ++.|...+...+.+.|..
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~--~~~~~~~~~~~~~~~~g~ 46 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAV--KYQLAGPIKDALAYAWGV 46 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEE--ECCTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCe--EEecChHHHHHHHHHccc
Confidence 3578899999998887776655533 578888888888888764
No 412
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=38.20 E-value=69 Score=32.90 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC-CcE-EEEE----eChHHHHHHHHHHHHh
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK-KSC-LCLA----TNAVSVDQWAFQFKLW 91 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~-~~~-LIl~----P~~~L~~Qw~~e~~~~ 91 (496)
.++++.++--+++.+..|.++.|+|||..++..+.... ..+ +|++ ..++ +.++.++|..-
T Consensus 150 ikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~e-v~e~~~~l~~~ 215 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKAST-ISNVVRKLEEH 215 (513)
T ss_dssp CHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHH-HHHHHHHHHHH
T ss_pred eeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHH-HHHHHHHHhhc
Confidence 46888776555556889999999999999876665533 232 2222 2333 56677777764
No 413
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=38.17 E-value=25 Score=35.22 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=12.5
Q ss_pred eEEEeCCCCChHHHHHH
Q 010991 46 GIIVLPCGAGKSLVGVS 62 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~ 62 (496)
.+..+.||+|||.+...
T Consensus 158 ifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 158 CFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp EEEEESTTSSHHHHHHC
T ss_pred EEeecCCCCCCCeEeec
Confidence 33348999999988643
No 414
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=38.14 E-value=24 Score=31.69 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=20.2
Q ss_pred EeCCCCChHHHHHHHHHh---cCCcEEEEEe
Q 010991 49 VLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (496)
Q Consensus 49 ~~~tG~GKTl~~i~~~~~---~~~~~LIl~P 76 (496)
....|.|||.+++.++.. .+.++++|=.
T Consensus 9 s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 9 SGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 356899999997776654 3568887754
No 415
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=38.09 E-value=41 Score=34.95 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=32.0
Q ss_pred CCCCcHHHHHHHHHHHhc--CCCcceEEEeCCCCChHHHHHHHH
Q 010991 23 HAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 23 ~~~lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
.+.-|+-..+.+..++.. +..+-..|+++.|.|||-.+..++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHH
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHH
Confidence 355688888888888863 223467888999999998887665
No 416
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=38.04 E-value=20 Score=35.17 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=12.5
Q ss_pred EEEeCCCCChHHHHHH
Q 010991 47 IIVLPCGAGKSLVGVS 62 (496)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (496)
+..+.||+|||.+...
T Consensus 89 fAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 89 FAYGQTGSGKTYTMLG 104 (360)
T ss_dssp EEECCTTSSHHHHHHB
T ss_pred EeeCCCCCCCCEEEec
Confidence 4558999999988643
No 417
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=37.97 E-value=20 Score=31.09 Aligned_cols=31 Identities=10% Similarity=-0.182 Sum_probs=21.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
-..++++.|+|||-....++..+ +.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 45688999999998866665443 34555555
No 418
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=37.83 E-value=36 Score=30.45 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=17.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.-..|++|.|+|||-..=.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467889999999996654444433
No 419
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.72 E-value=25 Score=39.92 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~ 64 (496)
..|+..|+..+.....||.++.|+|||..+=.++
T Consensus 144 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 177 (1080)
T 2dfs_A 144 EEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177 (1080)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHH
Confidence 3577777776666788889999999998854433
No 420
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=37.66 E-value=15 Score=31.46 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.2
Q ss_pred ceEEEeCCCCChHHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGVS 62 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (496)
-..|++|.|+|||-.+-.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567889999999966543
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=37.64 E-value=62 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.032 Sum_probs=24.1
Q ss_pred CcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEe
Q 010991 43 ARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (496)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P 76 (496)
.....|++++|+|||-.+..++.. .+.+++++..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 346778899999999887666544 3556666653
No 422
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=37.60 E-value=36 Score=39.11 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=34.2
Q ss_pred ceEEEeCCCCChHHHHHHH----HHhcC-----------CcEEEEEeChHHHHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSA----ACRIK-----------KSCLCLATNAVSVDQWAFQFKLW 91 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~----~~~~~-----------~~~LIl~P~~~L~~Qw~~e~~~~ 91 (496)
+.+|.+.-|||||.+-..- +...+ ..+|+|+=|...+...++.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 5699999999999884332 32211 26899998888888888877764
No 423
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.49 E-value=39 Score=42.88 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHH---HhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEEeChH
Q 010991 24 AQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79 (496)
Q Consensus 24 ~~lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~P~~~ 79 (496)
..+.|-=.+++..+ +..+ ..|.+.+|.|+|||.++-.++..++.+++|+..+-.
T Consensus 584 LViTPLTdrcy~tl~~Al~~~--~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~ 640 (3245)
T 3vkg_A 584 LVQTPLTDRCYLTLTQALESR--MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEG 640 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHHTT--CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred CcCChHHHHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCC
Confidence 34455555555543 3333 378899999999999999999999999888865443
No 424
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=37.44 E-value=27 Score=33.94 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=22.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
-.+.....|.|||.++..++.. .+++||+|-
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3455578999999997776544 467888776
No 425
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=37.26 E-value=30 Score=30.52 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC--CcEEEEE
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~--~~~LIl~ 75 (496)
.+...+........+++++.|+|||-..-.++.... .++.++.
T Consensus 20 ~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~ 64 (221)
T 2wsm_A 20 KNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML 64 (221)
T ss_dssp HHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred HHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe
Confidence 334444332335788999999999987766665432 3444444
No 426
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=37.21 E-value=32 Score=32.84 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=20.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
.-..|++|.|+|||-..-.++.. ..+++++..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35667899999999775444433 245665554
No 427
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=37.17 E-value=43 Score=34.49 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=33.7
Q ss_pred HHHHHHhcC--CCcceEEEeCCCCChHHHHHHHHHh---cCCcEEEEEeChHHHHHHHHHH
Q 010991 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (496)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~P~~~L~~Qw~~e~ 88 (496)
.+..++.++ .+.-..|.+|+|+|||..+..++.. .+.+++++++--. ..|+....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHH
Confidence 356666543 2245678899999999886665533 2446777776443 33444333
No 428
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=37.10 E-value=24 Score=34.39 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=11.7
Q ss_pred eEEEeCCCCChHHHH
Q 010991 46 GIIVLPCGAGKSLVG 60 (496)
Q Consensus 46 ~il~~~tG~GKTl~~ 60 (496)
.+..+.||+|||.+.
T Consensus 98 ifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 98 ALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EEEecCCCCCCCeEE
Confidence 344489999999985
No 429
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=36.48 E-value=41 Score=34.36 Aligned_cols=60 Identities=8% Similarity=-0.017 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC---CcEEEEE--e--ChHHHHHHHHHHHHh
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLA--T--NAVSVDQWAFQFKLW 91 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~---~~~LIl~--P--~~~L~~Qw~~e~~~~ 91 (496)
.++++.++--+++.+..|.++.|+|||.....++.... .-+.|++ = .++ +..+.+++..-
T Consensus 141 ir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rE-v~e~~~~~~~~ 207 (482)
T 2ck3_D 141 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE-GNDLYHEMIES 207 (482)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHH-HHHHHHHHHHH
T ss_pred eEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchH-HHHHHHHhhhc
Confidence 37888665444556899999999999999888877642 1233333 2 233 45566777664
No 430
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=36.40 E-value=19 Score=31.85 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=15.8
Q ss_pred cceEEEeCCCCChHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~ 65 (496)
.-..|++|+|+|||-.+-.++.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3556789999999976544443
No 431
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=36.08 E-value=26 Score=31.86 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=19.4
Q ss_pred EeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 49 VLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 49 ~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
..-.|.|||.+++.++.. .+.+||+|=
T Consensus 9 s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 9 SGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 356899999997776643 456787764
No 432
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=35.99 E-value=63 Score=30.59 Aligned_cols=22 Identities=18% Similarity=-0.032 Sum_probs=16.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
-..|.+|.|+|||-++-.++..
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4557799999999776555543
No 433
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=35.97 E-value=26 Score=32.23 Aligned_cols=27 Identities=30% Similarity=0.126 Sum_probs=19.4
Q ss_pred EeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 49 VLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 49 ~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
..-.|.|||.+++.++.. .+.+||+|=
T Consensus 25 s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 25 SGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 356799999997776644 356887764
No 434
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.70 E-value=24 Score=35.26 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=11.9
Q ss_pred EEEeCCCCChHHHHH
Q 010991 47 IIVLPCGAGKSLVGV 61 (496)
Q Consensus 47 il~~~tG~GKTl~~i 61 (496)
+..+.||+|||.+..
T Consensus 145 fAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 145 FAYGQTGSGKTFTML 159 (403)
T ss_dssp EEESCTTSSHHHHHH
T ss_pred EEECCCCCCCceEeC
Confidence 334899999999864
No 435
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=35.68 E-value=53 Score=32.93 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=40.1
Q ss_pred HHHHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc----c-cCCCcEEEEch
Q 010991 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER----F-RGNAGVVVTTY 121 (496)
Q Consensus 62 ~~~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~----~-~~~~~IiItT~ 121 (496)
..+...++++||+||+..-++...+.+... +..+..++|..+.. + .+...|+|+|-
T Consensus 171 ~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 171 DWILADKRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp HHHHHCCSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 334445678999999999999888888874 34688888864432 2 35678999994
No 436
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=35.58 E-value=25 Score=36.63 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE--e--ChHHHHHHHHHHHH
Q 010991 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA--T--NAVSVDQWAFQFKL 90 (496)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~--P--~~~L~~Qw~~e~~~ 90 (496)
++++.++--+++....|.++.|+|||.....++.....-++|++ = .++ +.++.++|.+
T Consensus 210 rvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~~~v~V~~~iGER~~E-v~e~~~~~~e 271 (578)
T 3gqb_A 210 RILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSNADVVVYVGSGERGNE-MTDVLVEFPE 271 (578)
T ss_dssp HHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSSCSEEEEEEEEECHHH-HHHHHTTGGG
T ss_pred hhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccCCCEEEEEEecccHHH-HHHHHHHHHh
Confidence 56665443344468899999999999998887776554444433 2 233 3445555543
No 437
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=35.52 E-value=39 Score=32.85 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
..+++.++.-+++....|.+|.|+|||...-.++....
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46888775544445788999999999977444444443
No 438
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=35.48 E-value=29 Score=34.00 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=12.0
Q ss_pred eEEEeCCCCChHHHHH
Q 010991 46 GIIVLPCGAGKSLVGV 61 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i 61 (496)
.+..+.||+|||.+..
T Consensus 96 ifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 96 IFAYGQTGSGKSYTMM 111 (354)
T ss_dssp EEEEECTTSSHHHHHT
T ss_pred EEeeCCCCCCCceEEe
Confidence 3344899999998853
No 439
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=35.44 E-value=29 Score=34.03 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=11.6
Q ss_pred EEEeCCCCChHHHHH
Q 010991 47 IIVLPCGAGKSLVGV 61 (496)
Q Consensus 47 il~~~tG~GKTl~~i 61 (496)
+..+.||+|||.+..
T Consensus 108 fAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 108 MCYGQTGAGKTYTMM 122 (358)
T ss_dssp EEEESTTSSHHHHHT
T ss_pred EEECCCCCCCceEec
Confidence 334899999998853
No 440
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=35.08 E-value=22 Score=36.75 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=17.0
Q ss_pred cceEEEeCCCCChHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~ 64 (496)
.+.+|+++||+|||...-+++
T Consensus 168 pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999998754444
No 441
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=34.92 E-value=51 Score=31.74 Aligned_cols=32 Identities=22% Similarity=-0.015 Sum_probs=20.8
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
.-..+++|.|+|||-..-.++.. .++++++..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35667899999999775444432 345666554
No 442
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=34.84 E-value=40 Score=32.86 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=22.5
Q ss_pred ceEEEeCCCCChHHHHHHHH---H--hcCCcEEEEEe
Q 010991 45 SGIIVLPCGAGKSLVGVSAA---C--RIKKSCLCLAT 76 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~---~--~~~~~~LIl~P 76 (496)
-.+..+-.|.|||.++..++ + ..+++||+|-.
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 44555789999999976654 3 44568888764
No 443
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=34.79 E-value=1.2e+02 Score=25.68 Aligned_cols=64 Identities=8% Similarity=-0.076 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHHhc-CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc--------c-cCCCcEEEEc
Q 010991 53 GAGKSLVGVSAACRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTT 120 (496)
Q Consensus 53 G~GKTl~~i~~~~~~-~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~--------~-~~~~~IiItT 120 (496)
...|......++... ..++||.|++..-+....+.+... + ..+..++|+.... + .+...|+|+|
T Consensus 15 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~---~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-N---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-T---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc-C---CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 345766555666554 368999999999888888888764 2 3577888875421 1 3567899988
No 444
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=34.71 E-value=31 Score=33.75 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=12.5
Q ss_pred ceEEEeCCCCChHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (496)
..+..+.||+|||.+..
T Consensus 80 tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 80 TIFAYGQTASGKTYTMM 96 (349)
T ss_dssp EEEEEESTTSSHHHHHT
T ss_pred ceeeecCCCCCCCeEEe
Confidence 34444899999998753
No 445
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=34.54 E-value=42 Score=30.24 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=21.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
.-.++.++.|+|||-++-.++..+..++
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 3567779999999999888877776543
No 446
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=34.38 E-value=29 Score=33.97 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=12.1
Q ss_pred ceEEEeCCCCChHHHH
Q 010991 45 SGIIVLPCGAGKSLVG 60 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (496)
..+..+.||+|||.+.
T Consensus 92 tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 92 TIFAYGQTGAGKTWTM 107 (350)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEeecCCCCCCCEEe
Confidence 3344489999999875
No 447
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=34.31 E-value=25 Score=36.71 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCCcEEEEE----eChHHHHHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA----TNAVSVDQWAFQFKL 90 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~~~LIl~----P~~~L~~Qw~~e~~~ 90 (496)
.++++.++--+++....|.++.|+|||.+...++.....-++|++ -.++ +.+..++|.+
T Consensus 215 irvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~~~~V~~~iGER~~E-v~e~~~~~~e 277 (588)
T 3mfy_A 215 QRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSDAQVVIYIGCGERGNE-MTDVLEEFPK 277 (588)
T ss_dssp CHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSSCSEEEEEECCSSSSH-HHHHHHHTTT
T ss_pred cchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccCCCEEEEEEecccHHH-HHHHHHHHHH
Confidence 367776654445568999999999999887776665544444444 2344 4556666654
No 448
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=34.19 E-value=33 Score=35.27 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcC-CcE-EEEE--e--ChHHHHHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK-KSC-LCLA--T--NAVSVDQWAFQFKL 90 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~-~~~-LIl~--P--~~~L~~Qw~~e~~~ 90 (496)
.++++.++--+++.+..|.++.|+|||.+++..+.+.. ..+ +|++ = .++ +.++.+++..
T Consensus 163 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~E-v~e~~~~~~~ 227 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSA-IARIIDKLRQ 227 (515)
T ss_dssp CHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHH-HHHHHHHHHH
T ss_pred ccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHH-HHHHHHHHHh
Confidence 56788665445556899999999999999886665543 332 2222 2 233 5567777765
No 449
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=33.96 E-value=30 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=22.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHhcCCcE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~~~~~ 71 (496)
-..|..++|+|||.++-.++..++-++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 456678999999999999998887653
No 450
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=33.94 E-value=34 Score=33.52 Aligned_cols=31 Identities=29% Similarity=0.112 Sum_probs=20.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
-..+++|+|+|||-..-.++.. ..+++++..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 4567899999999775444433 245666654
No 451
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=33.88 E-value=23 Score=37.13 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=29.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CC---cEEEEEeChHHHHHHHHHHHHhhCCCC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KK---SCLCLATNAVSVDQWAFQFKLWSTIQD 96 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~---~~LIl~P~~~L~~Qw~~e~~~~~~~~~ 96 (496)
.+.+|++.||+|||...-+++..+ .. --+|++..+.. +|..|.++|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~------eLs~~~~lPH 267 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKML------ELSIYEGIPH 267 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSH------HHHTTTTCTT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChh------hhHhhcCCCc
Confidence 478999999999998865555432 11 23555655531 4555555554
No 452
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=33.61 E-value=44 Score=32.55 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHHHhcCCCcceEEEeCCCCChHHHHHHHHH-----hcCCcEEEEEe
Q 010991 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-----RIKKSCLCLAT 76 (496)
Q Consensus 35 ~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~-----~~~~~~LIl~P 76 (496)
..++.....+-.++..--|.|||.++..++. ..+++||+|-.
T Consensus 10 ~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 10 ESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp HHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3445443334555667899999998766553 34568887764
No 453
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=33.57 E-value=30 Score=33.77 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=11.7
Q ss_pred eEEEeCCCCChHHHH
Q 010991 46 GIIVLPCGAGKSLVG 60 (496)
Q Consensus 46 ~il~~~tG~GKTl~~ 60 (496)
.+..+.||+|||.+.
T Consensus 87 ifAYGqTGSGKTyTm 101 (344)
T 4a14_A 87 VFAYGQTGSGKTYTM 101 (344)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EEEecccCCCceEee
Confidence 344489999999885
No 454
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=33.46 E-value=27 Score=34.22 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=12.1
Q ss_pred eEEEeCCCCChHHHHH
Q 010991 46 GIIVLPCGAGKSLVGV 61 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i 61 (496)
.+..+.||+|||.+..
T Consensus 109 ifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 109 VLAYGATGAGKTHTML 124 (355)
T ss_dssp EEEECCTTSSHHHHHT
T ss_pred EEEeCCCCCCceeeec
Confidence 3444899999998853
No 455
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=33.36 E-value=32 Score=33.32 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=16.5
Q ss_pred HHHHHhcCCCcceEEEeCCCCChHHHHH
Q 010991 34 LSKMFGNGRARSGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i 61 (496)
+..++.+. ....+..+.||+|||.+..
T Consensus 73 v~~~l~G~-n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 73 VTSCIDGF-NVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHTTC-CEEEEEESSTTSSHHHHHT
T ss_pred HHHHhCCC-EEEEEeECCCCCCCcEEEe
Confidence 34445443 2233344899999998753
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=33.25 E-value=19 Score=36.10 Aligned_cols=24 Identities=25% Similarity=0.023 Sum_probs=18.9
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.-.++++++|+|||-++-.++..+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 457788999999998877766554
No 457
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=33.19 E-value=25 Score=30.48 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=16.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
...|.+|.|+|||-..-.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999997754444333
No 458
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.17 E-value=27 Score=30.41 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=18.8
Q ss_pred eCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 50 LPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 50 ~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
.--|.|||.+++.++.. .+.++++|=
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45789999997776644 456777765
No 459
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=32.89 E-value=1.7e+02 Score=24.29 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhc-CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc--------c-cCCCcEEEEchHHh
Q 010991 56 KSLVGVSAACRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTTYNMV 124 (496)
Q Consensus 56 KTl~~i~~~~~~-~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~--------~-~~~~~IiItT~~~l 124 (496)
|.-....++... .+++||.|++..-+......+... +..+..++|+.... + .+...|+|+| +.+
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~ 90 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLL 90 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-GGG
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-Chh
Confidence 665555555554 468999999999888888888763 23577888874421 1 3567899988 444
No 460
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=32.81 E-value=32 Score=33.24 Aligned_cols=17 Identities=12% Similarity=-0.066 Sum_probs=12.7
Q ss_pred ceEEEeCCCCChHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (496)
..+..+.||+|||.+..
T Consensus 80 tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTME 96 (325)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEEECCCCCCCceEec
Confidence 34444899999998864
No 461
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=32.66 E-value=25 Score=33.30 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=16.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
-..|++++|+|||-.+-.++..+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45677999999998865555443
No 462
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=32.53 E-value=13 Score=32.76 Aligned_cols=23 Identities=22% Similarity=0.037 Sum_probs=18.0
Q ss_pred eEEEeCCCCChHHHHHHHHHhcC
Q 010991 46 GIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.+|.++.|+|||-++-.++..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 56889999999988766666553
No 463
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=32.26 E-value=19 Score=32.39 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=11.9
Q ss_pred cceEEEeCCCCChHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAA 64 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~ 64 (496)
.-..|.+|+|+|||-++-.++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 356788999999997755554
No 464
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=32.18 E-value=37 Score=34.96 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHh
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~ 66 (496)
.++++.++--+++.+..|.++.|+|||.+++..+.+
T Consensus 150 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~ 185 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN 185 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred ceeeccccccccCCEEEEecCCCCCchHHHHHHHHH
Confidence 467887665555578999999999999997755543
No 465
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=32.15 E-value=31 Score=34.28 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=12.1
Q ss_pred eEEEeCCCCChHHHHHH
Q 010991 46 GIIVLPCGAGKSLVGVS 62 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~ 62 (496)
.+..+.||+|||.+...
T Consensus 138 ifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 138 CFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp EEEESCTTSSHHHHHC-
T ss_pred EEEecCCCCCCCeEecc
Confidence 33347999999998543
No 466
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=32.08 E-value=36 Score=34.99 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhc-CCcE-EEEE--e--ChHHHHHHHHHHHHh
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-KKSC-LCLA--T--NAVSVDQWAFQFKLW 91 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~-~~~~-LIl~--P--~~~L~~Qw~~e~~~~ 91 (496)
.++++.++--+++.+..|.++.|+|||.+++..+.+. ...+ +|++ = .++ +.++.+++..-
T Consensus 150 iraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~E-v~~~~~~~~~~ 215 (502)
T 2qe7_A 150 IKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQST-VAGVVETLRQH 215 (502)
T ss_dssp CHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHH-HHHHHHHHHHT
T ss_pred eeecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchH-HHHHHHHHhhC
Confidence 4677765544555689999999999999987666554 3332 2322 1 333 56677777763
No 467
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=31.92 E-value=39 Score=31.80 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=18.7
Q ss_pred eCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 50 LPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 50 ~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
.-.|.|||.+++.++.. .+++||+|=
T Consensus 100 ~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 100 VSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp SSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 35799999998776644 356887773
No 468
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=31.86 E-value=36 Score=33.54 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=12.5
Q ss_pred ceEEEeCCCCChHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (496)
..+..+.||+|||.+..
T Consensus 104 tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 104 TIFAYGQTGTGKTYTME 120 (372)
T ss_dssp EEEEEESTTSSHHHHHT
T ss_pred eEEeecCCCCCCCEeEe
Confidence 33444899999998853
No 469
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=31.79 E-value=33 Score=33.70 Aligned_cols=17 Identities=12% Similarity=-0.066 Sum_probs=12.5
Q ss_pred ceEEEeCCCCChHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (496)
..+..+.||+|||.+..
T Consensus 87 tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 87 TIFAYGQTSSGKTHTME 103 (365)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEeecCCCCCCceEEe
Confidence 33444899999998853
No 470
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.76 E-value=28 Score=34.93 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCcceEEEeCCCCChHHHHH
Q 010991 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i 61 (496)
.+..++.+. ....+..+.||+|||.+..
T Consensus 130 lv~~~l~G~-n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 130 LIQSALDGY-NICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHTTC-CEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHCCC-ceEEEEecCCCCCCeeEec
Confidence 344455543 2233334899999998853
No 471
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=31.03 E-value=37 Score=33.31 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=12.0
Q ss_pred eEEEeCCCCChHHHHH
Q 010991 46 GIIVLPCGAGKSLVGV 61 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i 61 (496)
.+..+.||+|||.+..
T Consensus 92 ifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 92 IFAYGQTGTGKTFTME 107 (359)
T ss_dssp EEEEECTTSSHHHHHT
T ss_pred EEEeCCCCCCCceEEe
Confidence 3334899999998764
No 472
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=31.02 E-value=60 Score=32.39 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=40.5
Q ss_pred HHhcCCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc----c-cCCCcEEEEch
Q 010991 64 ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER----F-RGNAGVVVTTY 121 (496)
Q Consensus 64 ~~~~~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~----~-~~~~~IiItT~ 121 (496)
+....+++||+||+..-++...+.+... +..+..++|+.++. + .+..+|+|+|-
T Consensus 167 l~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 167 ITEFDGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp HHSCSSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred HHcCCCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 3444668999999999889888888875 34688898875432 1 36678999994
No 473
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=31.00 E-value=35 Score=31.78 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=17.6
Q ss_pred CCCCChHHHHHHHHHh---cCCcEEEE
Q 010991 51 PCGAGKSLVGVSAACR---IKKSCLCL 74 (496)
Q Consensus 51 ~tG~GKTl~~i~~~~~---~~~~~LIl 74 (496)
-.|.|||.+++.++.. .+++||+|
T Consensus 91 kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 91 APGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4699999997666543 46788776
No 474
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=31.00 E-value=32 Score=30.29 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=16.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHc
Q 010991 267 RGDKIIVFADNLFALTEYAMKL 288 (496)
Q Consensus 267 ~g~kiIVF~~~~~~~~~l~~~L 288 (496)
.+..+|+.++....+..+++..
T Consensus 177 ~g~tvi~vtHdl~~~~~~~d~i 198 (207)
T 1znw_A 177 GDFDKVVVNRRLESACAELVSL 198 (207)
T ss_dssp GGSSEEEECSSHHHHHHHHHHH
T ss_pred ccCcEEEECCCHHHHHHHHHHH
Confidence 4567788888888888887765
No 475
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=30.75 E-value=1.4e+02 Score=24.82 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred CCChHHHHHHHHHhc-CCcEEEEEeChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccc--------c-cCCCcEEEEchH
Q 010991 53 GAGKSLVGVSAACRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTTYN 122 (496)
Q Consensus 53 G~GKTl~~i~~~~~~-~~~~LIl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~g~~~~~--------~-~~~~~IiItT~~ 122 (496)
...|-.....++... ..++||.|++..-+....+.+... +..+..++|+.... + .+...|+|+| +
T Consensus 19 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-D 93 (163)
T ss_dssp GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-G
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-C
Confidence 345665544555443 468999999999888888888764 23578888874321 2 3567899999 4
Q ss_pred Hhh
Q 010991 123 MVA 125 (496)
Q Consensus 123 ~l~ 125 (496)
.+.
T Consensus 94 ~~~ 96 (163)
T 2hjv_A 94 VAA 96 (163)
T ss_dssp GGT
T ss_pred hhh
Confidence 443
No 476
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=30.62 E-value=33 Score=31.09 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=19.7
Q ss_pred cceEEEeCCCCChHHHHHHHHHhcC
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.-.++.++.|+|||-++-.++..+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567779999999988877776654
No 477
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=30.49 E-value=40 Score=34.85 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=23.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
-.++++.+|+|||-++-.++..+ ...+.++.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 56788999999999988887665 34555544
No 478
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=30.03 E-value=38 Score=34.29 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=12.1
Q ss_pred eEEEeCCCCChHHHHH
Q 010991 46 GIIVLPCGAGKSLVGV 61 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i 61 (496)
.+..+.||+|||.+..
T Consensus 140 IfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 140 IFAYGQTGSGKSYTMM 155 (443)
T ss_dssp EEEESSTTSSHHHHHT
T ss_pred EEEeCCCCCCCCEEee
Confidence 3344899999998864
No 479
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=29.93 E-value=40 Score=33.18 Aligned_cols=17 Identities=29% Similarity=0.172 Sum_probs=12.4
Q ss_pred ceEEEeCCCCChHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (496)
..+..+.||+|||.+..
T Consensus 92 tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 92 CIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEEeCCCCCCCceEee
Confidence 33444899999998753
No 480
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=29.90 E-value=44 Score=35.44 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=23.5
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc---CCcEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~---~~~~LIl 74 (496)
...++.+.+|+|||-++-.++..+ +.+++.+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 346788999999999988887766 5565554
No 481
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=29.54 E-value=30 Score=33.79 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=11.5
Q ss_pred EEeCCCCChHHHHH
Q 010991 48 IVLPCGAGKSLVGV 61 (496)
Q Consensus 48 l~~~tG~GKTl~~i 61 (496)
..+.||+|||.+..
T Consensus 91 AYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 91 AYGQTGSGKTYTML 104 (349)
T ss_dssp EECSTTSSHHHHHH
T ss_pred EeCCCCCCCceEeC
Confidence 34899999999864
No 482
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=29.44 E-value=50 Score=31.75 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=15.8
Q ss_pred eEEEeCCCCChHHHHHHHHHhc
Q 010991 46 GIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 46 ~il~~~tG~GKTl~~i~~~~~~ 67 (496)
..|.+|.|+|||-.+-.+...+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999998765554443
No 483
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=29.41 E-value=47 Score=29.37 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=23.9
Q ss_pred EEEeCCCCChHHHHHHHHHh---cCCcEEEEE--eChHHHHHHHH
Q 010991 47 IIVLPCGAGKSLVGVSAACR---IKKSCLCLA--TNAVSVDQWAF 86 (496)
Q Consensus 47 il~~~tG~GKTl~~i~~~~~---~~~~~LIl~--P~~~L~~Qw~~ 86 (496)
+...--|.|||.+++.++.. .+ ++++|= |... ...|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~-~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRS-ATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCH-HHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCC-HHHHhc
Confidence 34567899999998777644 35 777753 4433 344543
No 484
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=29.17 E-value=17 Score=31.45 Aligned_cols=22 Identities=18% Similarity=-0.049 Sum_probs=16.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
...|++++|+|||-.+-.++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999776555543
No 485
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=29.09 E-value=36 Score=33.33 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=12.5
Q ss_pred ceEEEeCCCCChHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (496)
..+..+.||+|||.+..
T Consensus 83 tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 83 TVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred eEEEECCCCCCcceEee
Confidence 34444899999998753
No 486
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=29.08 E-value=40 Score=33.25 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=12.5
Q ss_pred ceEEEeCCCCChHHHHH
Q 010991 45 SGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (496)
..+..+.||+|||.+..
T Consensus 103 tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 103 TVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEeecCCCCCcceecc
Confidence 33444899999998754
No 487
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=29.07 E-value=51 Score=30.96 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=22.1
Q ss_pred cceEEEeCCCCChHHHHHHHHHh---cCCcEEEEE
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl~ 75 (496)
+-..++.--|.|||.+++.++.. .+.+||+|=
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34455578899999997766543 466777763
No 488
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=29.07 E-value=42 Score=34.07 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCcceEEEeCCCCChHHHHHHHHHhcCC--c----EEEEE----eChHHHHHHHHHHHH
Q 010991 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK--S----CLCLA----TNAVSVDQWAFQFKL 90 (496)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~~~~~~~--~----~LIl~----P~~~L~~Qw~~e~~~ 90 (496)
.++++.++--+++.+..|.++.|.|||.....++..... . ++|++ -.++ +.++.++|..
T Consensus 139 iraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~E-v~e~~~~~~~ 207 (465)
T 3vr4_D 139 ISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEE-AEFFMEDFRQ 207 (465)
T ss_dssp CHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHH-HHHHHHHHHH
T ss_pred ceEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHH-HHHHHHHHhh
Confidence 356665544344457788899999999887666655421 2 33333 2344 5556667765
No 489
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=29.02 E-value=34 Score=33.74 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=15.9
Q ss_pred HHHHHhcCCCcceEEEeCCCCChHHHHH
Q 010991 34 LSKMFGNGRARSGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i 61 (496)
+..++.+. ....+..+.||+|||.+..
T Consensus 72 v~~~l~G~-n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 72 VQSAVDGY-NVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHTTC-EEEEEEEECTTSSHHHHHT
T ss_pred hHhhhcCC-ceEEEEECCCCCCCeEeec
Confidence 33445443 1223334899999998853
No 490
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=28.72 E-value=1e+02 Score=31.55 Aligned_cols=54 Identities=4% Similarity=0.220 Sum_probs=44.4
Q ss_pred CCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHhcCCCccEEEEee
Q 010991 268 GDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (496)
Q Consensus 268 g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~~~~~vlv~s~ 322 (496)
+.++||.++.+..+....+.|. +..++|+.+..++..+...+..+ ..+++++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~-~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG-QIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT-CCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECH
Confidence 4589999999998887777663 45689999999998888888887 788888875
No 491
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=28.67 E-value=51 Score=30.24 Aligned_cols=30 Identities=20% Similarity=0.034 Sum_probs=19.7
Q ss_pred ceEEEe-CCCCChHHHHHHHHHhc---CCcEEEE
Q 010991 45 SGIIVL-PCGAGKSLVGVSAACRI---KKSCLCL 74 (496)
Q Consensus 45 ~~il~~-~tG~GKTl~~i~~~~~~---~~~~LIl 74 (496)
..+|.+ .||+|||.+++.++..+ +.++.++
T Consensus 23 ~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 23 MLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 444444 69999999987776543 4455554
No 492
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.39 E-value=45 Score=29.99 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=17.0
Q ss_pred cceEEEeCCCCChHHHHHHHHHhc
Q 010991 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~~~ 67 (496)
.-.+|++|.|+|||-..=.++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 467788999999997654444433
No 493
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=28.34 E-value=99 Score=32.36 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=42.5
Q ss_pred CCeEEEEeccHHHHHHHHHHcC-----CCeEEcCCCHHHHHHHHHHHh--cCCCccEEEEee
Q 010991 268 GDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFK--CSRDLNTIFLSK 322 (496)
Q Consensus 268 g~kiIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~--~~~~~~vlv~s~ 322 (496)
+.++||.++++..++...+.|. +..++|+++..++..++..+. .+ ..+++++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS-ELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTC-CCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccC-CCCEEEECh
Confidence 5589999999988877777663 567899999999988888773 44 677888775
No 494
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=28.14 E-value=36 Score=29.49 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=16.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHh
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR 66 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~ 66 (496)
-.+|+++.|+|||-..-.++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4678899999999775555543
No 495
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=28.04 E-value=53 Score=33.84 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHHHh--cCCCcceEEEeCCCCChHHHHHHHHHhcC
Q 010991 26 PRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (496)
Q Consensus 26 lr~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~~~~~~ 68 (496)
.+|.=.+.+...+. ..+....++.+.+|+|||-++-.++..+.
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 34444555555442 12223566678999999999988888765
No 496
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=27.94 E-value=32 Score=30.93 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=20.8
Q ss_pred EEeCCCCChHHHHHHHHHhc---CCcEEEEE
Q 010991 48 IVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (496)
Q Consensus 48 l~~~tG~GKTl~~i~~~~~~---~~~~LIl~ 75 (496)
+...-|.|||.+++.++..+ +.+||+|=
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36778999999988777654 55777763
No 497
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=27.91 E-value=59 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=18.8
Q ss_pred eCCCCChHHHHHHHHHh---c-CCcEEEEE
Q 010991 50 LPCGAGKSLVGVSAACR---I-KKSCLCLA 75 (496)
Q Consensus 50 ~~tG~GKTl~~i~~~~~---~-~~~~LIl~ 75 (496)
.--|.|||.+++.++.. . +.+||+|=
T Consensus 12 ~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 12 AKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp SSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 56799999998777654 3 55777764
No 498
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=27.88 E-value=35 Score=32.80 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=18.7
Q ss_pred cceEEEeCCCCChHHHHHHHHH
Q 010991 44 RSGIIVLPCGAGKSLVGVSAAC 65 (496)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~~~ 65 (496)
...++.++.|+|||-+++.++.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5688899999999988888765
No 499
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.54 E-value=50 Score=33.95 Aligned_cols=30 Identities=23% Similarity=0.082 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHh---cCCcEEEE
Q 010991 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCL 74 (496)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~~~~---~~~~~LIl 74 (496)
-..|+++.|+|||-..-.++.. .++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4567899999999775444432 34667765
No 500
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=27.37 E-value=35 Score=33.85 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=20.1
Q ss_pred cHHHHHHHHHH--------HhcCCCcceEEEeCCCCChHHHHH
Q 010991 27 RPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGV 61 (496)
Q Consensus 27 r~yQ~~al~~~--------~~~~~~~~~il~~~tG~GKTl~~i 61 (496)
..-|.+.+... +. |.....+..+.||+|||.+..
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~-G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLE-GQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTT-TCCEEEEEESCTTSSHHHHHT
T ss_pred CCCHhHHHHHHHHHHHHHhhc-CceeeEeeecCCCCCCCeEee
Confidence 33477666542 33 332233344899999998753
Done!