Your job contains 1 sequence.
>010992
MDQEQPQQPQQTQTPTPSTTTTTTANTASSTVTTSQITAPSSQPPQQQQQTPPTPSTPSS
TTIPTSTPTTNTPNPNPSPSPSPAPPSRPTSLTPPPPRPTSFSRPWQPPQQHFSHFSSLP
SSSSATPSTSASPPIPSPPRGGIAIGVPAPRPTALSPQPSPPFSSSFGQPFGGLGRSGVN
VPDSVRPPAIQGMGVMGSLGSSSQMRPAGISVQHHQPRPVQQSSLRPPPSSPSSQSPGTQ
NFQGQGLMRVSQVGSPGSSSPNTSQSVQSFNQPWLSSGSQGKPPLAPPSTYRPQMNTPSM
QQRSHIPQQHSPLSTNLQQQHLSSVQPQQSKPSHQLPDHYGQQFSSPRVPQSSPHQQQIT
RPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSERL
DPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEI
KTFRKPVRIVTDPIPL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010992
(496 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2100053 - symbol:TAF12 "TBP-associated factor ... 663 4.1e-65 1
TAIR|locus:2018861 - symbol:EER4 "ENHANCED ETHYLENE RESPO... 332 3.4e-29 1
POMBASE|SPAC15A10.02 - symbol:taf12 "transcription factor... 309 1.3e-27 1
UNIPROTKB|Q5ZKX3 - symbol:TAF12 "Uncharacterized protein"... 302 7.3e-27 1
UNIPROTKB|G3MXQ4 - symbol:G3MXQ4 "Uncharacterized protein... 295 4.0e-26 1
MGI|MGI:1913714 - symbol:Taf12 "TAF12 RNA polymerase II, ... 294 5.2e-26 1
RGD|1592841 - symbol:Taf12 "TAF12 RNA polymerase II, TATA... 294 5.2e-26 1
UNIPROTKB|Q3T174 - symbol:TAF12 "Transcription initiation... 293 6.6e-26 1
ZFIN|ZDB-GENE-031030-5 - symbol:taf12 "TAF12 RNA polymera... 293 6.6e-26 1
UNIPROTKB|E2QVZ3 - symbol:TAF12 "Uncharacterized protein"... 292 8.4e-26 1
UNIPROTKB|Q16514 - symbol:TAF12 "Transcription initiation... 290 1.4e-25 1
DICTYBASE|DDB_G0274697 - symbol:taf12 "TFIID subunit" spe... 262 1.8e-25 2
SGD|S000002552 - symbol:TAF12 "Subunit (61/68 kDa) of TFI... 277 1.6e-23 1
UNIPROTKB|I3LKU2 - symbol:TAF12 "Uncharacterized protein"... 260 2.1e-22 1
FB|FBgn0011290 - symbol:Taf12 "TBP-associated factor 12" ... 221 5.2e-21 2
UNIPROTKB|J9NXV6 - symbol:J9NXV6 "Uncharacterized protein... 238 4.4e-20 1
CGD|CAL0005789 - symbol:orf19.470 species:5476 "Candida a... 243 1.7e-19 1
ASPGD|ASPL0000036544 - symbol:AN2769 species:162425 "Emer... 207 2.7e-16 2
UNIPROTKB|G4NDQ9 - symbol:MGG_00885 "Uncharacterized prot... 196 4.7e-13 1
UNIPROTKB|D4A8J1 - symbol:D4A8J1 "Uncharacterized protein... 150 2.4e-10 1
WB|WBGene00006396 - symbol:taf-12 species:6239 "Caenorhab... 149 4.4e-08 1
FB|FBgn0031623 - symbol:Taf12L "TBP-associated factor 30k... 111 5.3e-06 1
>TAIR|locus:2100053 [details] [associations]
symbol:TAF12 "TBP-associated factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005669 "transcription
factor TFIID complex" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847
ProDom:PD012998 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006352 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0003743
EMBL:AC010927 GO:GO:0005669 UniGene:At.23399 UniGene:At.39997
eggNOG:COG5624 KO:K03126 HSSP:Q16514 EMBL:AF344878 EMBL:AY463613
EMBL:AK221690 IPI:IPI00544681 RefSeq:NP_566367.1 UniGene:At.75030
ProteinModelPortal:Q9SR71 SMR:Q9SR71 IntAct:Q9SR71 STRING:Q9SR71
PaxDb:Q9SR71 PRIDE:Q9SR71 EnsemblPlants:AT3G10070.1 GeneID:820168
KEGG:ath:AT3G10070 TAIR:At3g10070 HOGENOM:HOG000153525
InParanoid:Q9SR71 OMA:ESITTFG PhylomeDB:Q9SR71
ProtClustDB:CLSN2716425 ArrayExpress:Q9SR71 Genevestigator:Q9SR71
Uniprot:Q9SR71
Length = 539
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 170/411 (41%), Positives = 201/411 (48%)
Query: 102 FSRPWQPPQQHFSHFXXXXXXXXXXXXXXXXXXXXX----XXRGGIAIGVPA-----PRP 152
+SRPWQ ++HF RGG+AIGVPA P P
Sbjct: 95 YSRPWQQ-HSSYTHFSSASSPLLSSSSAPASSSSSLPISGQQRGGMAIGVPASPIPSPSP 153
Query: 153 TALXXXXXXXXXXXXXXXXXXLGRSGVNVPDSVR---PPAI------QXXXXXXXXXXXX 203
T LGR V + ++ P + Q
Sbjct: 154 TP-SQHSPSAFPGSFGQQYGGLGRGTVGMSEATSNTSSPQVRMMQGTQGIGMMGTLGSGS 212
Query: 204 XXRPAGISVQHHXXXXXXXXXXXXXXXXXXXXXXGTQNFQGQGLMRXXXXXX-XXXXXXX 262
RP+G++ QH QNFQG LMR
Sbjct: 213 QIRPSGMT-QHQQRPTQSSLRPASSTSTQSPVA---QNFQGHSLMRPSPISSPNVQSTGA 268
Query: 263 XXXXXXXFNQPWLSSGSQGKPPLAPPSTYRPQMNTPSMQQRSHIPQQHSPLSTNLXXXXX 322
NQPWLSS QGKPPL PPS YRPQ+N+PSMQQR HIPQQH +ST+
Sbjct: 269 SQQSLQAINQPWLSSTPQGKPPLPPPS-YRPQVNSPSMQQRPHIPQQH--ISTS---AAT 322
Query: 323 XXXXXXXXKPSHQLPDHYGQQFSSPRVPQSSPHQQQITRPPGSATQKPSSLALV-QPNAV 381
+ HQ P QQ SP+ P + PHQ TR G QK +S + QP
Sbjct: 323 PQPQQQQSQQQHQ-PQEQLQQLRSPQQPLAHPHQP--TRVQGLVNQKVTSPVMPSQPPVA 379
Query: 382 QTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITM 441
Q GN +K E++ +RIL KRSI EL+ QIDPSE+LDP+VEDIL DIAEDFVESIT
Sbjct: 380 QPGNHAKTVSAETEPSDDRILGKRSIHELLQQIDPSEKLDPEVEDILSDIAEDFVESITT 439
Query: 442 FGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRKPVRIVTD 492
FGCSLAKHRKSD LEAKDIL+H+ERNWN+ PGFS DE KTFRKP + TD
Sbjct: 440 FGCSLAKHRKSDILEAKDILLHVERNWNIRPPGFSSDEFKTFRKP--LTTD 488
>TAIR|locus:2018861 [details] [associations]
symbol:EER4 "ENHANCED ETHYLENE RESPONSE 4" species:3702
"Arabidopsis thaliana" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005669 "transcription factor TFIID
complex" evidence=IEA;ISS] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA;ISS] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009867 "jasmonic
acid mediated signaling pathway" evidence=IMP] [GO:0010104
"regulation of ethylene mediated signaling pathway" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR003228
InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998 EMBL:CP002684
GO:GO:0005634 GO:GO:0006352 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0009736 GO:GO:0003743 GO:GO:0009867 GO:GO:0005669
GO:GO:0010104 KO:K03126 HSSP:Q16514 EMBL:AY056144 EMBL:AY091423
EMBL:AY463614 IPI:IPI00528864 RefSeq:NP_564023.1 RefSeq:NP_849680.1
UniGene:At.22899 UniGene:At.41836 ProteinModelPortal:Q940A7
SMR:Q940A7 IntAct:Q940A7 STRING:Q940A7 PRIDE:Q940A7
EnsemblPlants:AT1G17440.1 EnsemblPlants:AT1G17440.2 GeneID:838316
KEGG:ath:AT1G17440 TAIR:At1g17440 HOGENOM:HOG000238463
InParanoid:Q940A7 OMA:SLAFMNP PhylomeDB:Q940A7
ProtClustDB:CLSN2687840 ArrayExpress:Q940A7 Genevestigator:Q940A7
Uniprot:Q940A7
Length = 683
Score = 332 (121.9 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 81/211 (38%), Positives = 115/211 (54%)
Query: 275 LSSGSQGKPPLAPPSTYRPQMNTPSMQQRSHI---PQQHSPLS-TNLXXXXXXXXXXXXX 330
L Q + L+ P ++ M+ + QQ S I QQ S L + +
Sbjct: 397 LQQQQQQQQQLSSPQLHQSSMSL-NQQQISQIIQQQQQQSQLGQSQMNQSHSQQQLQQMQ 455
Query: 331 KPSHQLPDHYGQQFSSPRVPQSSPHQQQITRPPGSATQKPSSLALVQPNAVQTGNQSKIA 390
+ Q P QQ + QQ R A QK SL QP A Q+G +
Sbjct: 456 QQLQQQPQQQMQQQQQQQQQMQINQQQPSPRMLSHAGQKSVSLTGSQPEATQSGTTTP-G 514
Query: 391 GTESD--EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAK 448
G+ S E N++L KR IQ+LV+Q+D +LDPDVED+L+++A+DF++S+T F CSLAK
Sbjct: 515 GSSSQGTEATNQLLGKRKIQDLVSQVDVHAKLDPDVEDLLLEVADDFIDSVTSFACSLAK 574
Query: 449 HRKSDTLEAKDILVHLERNWNMTLPGFSGDE 479
HRKS LE KDIL+HLE+N ++T+PGFS ++
Sbjct: 575 HRKSSVLEPKDILLHLEKNLHLTIPGFSSED 605
>POMBASE|SPAC15A10.02 [details] [associations]
symbol:taf12 "transcription factor TFIID complex
subunit A/ SAGA complex subunit Taf12" species:4896
"Schizosaccharomyces pombe" [GO:0000124 "SAGA complex"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005669 "transcription factor TFIID complex" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=IC] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=ISO] [GO:0016573 "histone acetylation"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847
ProDom:PD012998 PomBase:SPAC15A10.02 EMBL:CU329670 GO:GO:0006355
GenomeReviews:CU329670_GR GO:GO:0016573 GO:GO:0006338 GO:GO:0000790
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0000124 GO:GO:0006367
GO:GO:0000991 GO:GO:0005669 eggNOG:COG5624 KO:K03126 HSSP:Q16514
PIR:T37702 RefSeq:NP_594289.1 ProteinModelPortal:O13722 SMR:O13722
STRING:O13722 EnsemblFungi:SPAC15A10.02.1 GeneID:2542785
KEGG:spo:SPAC15A10.02 OrthoDB:EOG45TGXB NextBio:20803829
Uniprot:O13722
Length = 450
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 74/206 (35%), Positives = 116/206 (56%)
Query: 286 APPSTYRPQMN----TPSMQQRSHIPQQHSPLSTNLXXXXXXXXXXXXXK-PSHQLPDHY 340
AP P+ + TP +++ + + L+T+ + PS+ +H
Sbjct: 233 APQQRINPETSSVPETPVGVSAANVSNESTELATSATQQSGLANNVEKSQTPSYMSANHL 292
Query: 341 GQQFSSPRVPQSSPHQQQITRPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNR 400
+ S +P S P + T G A+ S+ L P S+ E D GNR
Sbjct: 293 PKVDSKSPIPFSVP-PSRATLTGGYAS---GSIGLSTPGL------SRAPHYELDN-GNR 341
Query: 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460
+L+KR + +L+ QID E+++P+VE++L++IA++FVES+T F C LAKHRKSDTL+ +D+
Sbjct: 342 LLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTLDVRDV 401
Query: 461 LVHLERNWNMTLPGFSGDEI-KTFRK 485
+HLERNWN+ LPGF+ D+I K+ RK
Sbjct: 402 QLHLERNWNIRLPGFASDDIVKSARK 427
>UNIPROTKB|Q5ZKX3 [details] [associations]
symbol:TAF12 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0000125 "PCAF complex" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0004402
"histone acetyltransferase activity" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0030914 "STAGA complex" evidence=IEA] [GO:0033276
"transcription factor TFTC complex" evidence=IEA] [GO:0043966
"histone H3 acetylation" evidence=IEA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IEA] InterPro:IPR003228 InterPro:IPR009072
Pfam:PF03847 ProDom:PD012998 GO:GO:0051091 GO:GO:0003677
GO:GO:0003700 GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006367 GO:GO:0043966 GO:GO:0004402 GO:GO:0005669
GO:GO:0030914 GO:GO:0033276 GO:GO:0000125 CTD:6883 eggNOG:COG5624
GeneTree:ENSGT00390000002144 HOGENOM:HOG000035092
HOVERGEN:HBG055174 KO:K03126 OMA:KMPGTPS OrthoDB:EOG4ZCT5X
EMBL:AADN02043979 EMBL:AJ719961 IPI:IPI00599624
RefSeq:NP_001026065.1 UniGene:Gga.3980 SMR:Q5ZKX3 STRING:Q5ZKX3
Ensembl:ENSGALT00000001463 Ensembl:ENSGALT00000041133 GeneID:419585
KEGG:gga:419585 InParanoid:Q5ZKX3 NextBio:20822616 Uniprot:Q5ZKX3
Length = 161
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/125 (46%), Positives = 86/125 (68%)
Query: 361 RPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSERL 420
+P ++T SS+A A G S G S E N++LTK+ +Q+LV ++DP+E+L
Sbjct: 19 KPEPASTPPQSSMANSTAVAKMPGTPSG-GGRLSPE-SNQVLTKKKLQDLVREVDPNEQL 76
Query: 421 DPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEI 480
D DVE++L+ IA+DF+ES+ C LA+HRKS+TLE KD+ +HLER WNM +PGF +EI
Sbjct: 77 DEDVEEMLLQIADDFIESVVTAACQLARHRKSNTLEVKDVQLHLERQWNMWIPGFGSEEI 136
Query: 481 KTFRK 485
+ ++K
Sbjct: 137 RPYKK 141
>UNIPROTKB|G3MXQ4 [details] [associations]
symbol:G3MXQ4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847
ProDom:PD012998 GO:GO:0006352 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0005669 GeneTree:ENSGT00390000002144 EMBL:DAAA02038278
Ensembl:ENSBTAT00000037324 Uniprot:G3MXQ4
Length = 161
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 61/127 (48%), Positives = 87/127 (68%)
Query: 360 TRPPGSATQKPSSLALVQ-PNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSE 418
T P GS SS A+V+ P TG G S E N++LTK+ +Q+LV ++DP+E
Sbjct: 25 TPPQGSMA---SSTAVVKIPGTPGTG------GRLSPE-SNQVLTKKKLQDLVREVDPNE 74
Query: 419 RLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGD 478
+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE K++ +HLER WNM +PGFS +
Sbjct: 75 QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKNVQLHLERQWNMWIPGFSSE 134
Query: 479 EIKTFRK 485
EI+ ++K
Sbjct: 135 EIRPYKK 141
>MGI|MGI:1913714 [details] [associations]
symbol:Taf12 "TAF12 RNA polymerase II, TATA box binding
protein (TBP)-associated factor" species:10090 "Mus musculus"
[GO:0000125 "PCAF complex" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005669 "transcription
factor TFIID complex" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISO] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0030914 "STAGA complex" evidence=ISO;IDA]
[GO:0033276 "transcription factor TFTC complex" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=ISO] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=ISO] InterPro:IPR003228
InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998 MGI:MGI:1913714
GO:GO:0051091 GO:GO:0003677 GO:GO:0003700 GO:GO:0003713
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0043966
GO:GO:0004402 GO:GO:0005669 GO:GO:0030914 GO:GO:0033276
GO:GO:0000125 CTD:6883 eggNOG:COG5624 GeneTree:ENSGT00390000002144
HOVERGEN:HBG055174 KO:K03126 OrthoDB:EOG4ZCT5X EMBL:AK007811
EMBL:AK013133 EMBL:AK132927 EMBL:BC019668 IPI:IPI00311877
RefSeq:NP_079855.2 UniGene:Mm.331926 ProteinModelPortal:Q8VE65
SMR:Q8VE65 DIP:DIP-29178N STRING:Q8VE65 PhosphoSite:Q8VE65
PaxDb:Q8VE65 PRIDE:Q8VE65 Ensembl:ENSMUST00000030731 GeneID:66464
KEGG:mmu:66464 UCSC:uc008vax.2 InParanoid:Q8VE65 NextBio:321768
Bgee:Q8VE65 Genevestigator:Q8VE65 GermOnline:ENSMUSG00000028899
Uniprot:Q8VE65
Length = 161
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 60/131 (45%), Positives = 88/131 (67%)
Query: 361 RPPGSATQKPSSLALVQPNAVQTGNQSKIAGTE------SDEFGNRILTKRSIQELVNQI 414
+P ++T S+A N+ G KIAGT S E N++LTK+ +Q+LV ++
Sbjct: 19 KPEPASTPPQGSMA----NSTTVG---KIAGTPGTGGRLSPE-NNQVLTKKKLQDLVREV 70
Query: 415 DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474
DP+E+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE KD+ +HLER WNM +PG
Sbjct: 71 DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPG 130
Query: 475 FSGDEIKTFRK 485
F +EI+ ++K
Sbjct: 131 FGSEEIRPYKK 141
>RGD|1592841 [details] [associations]
symbol:Taf12 "TAF12 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0000125 "PCAF complex" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005669 "transcription
factor TFIID complex" evidence=ISO] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISO] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0030914 "STAGA
complex" evidence=ISO] [GO:0033276 "transcription factor TFTC
complex" evidence=ISO] [GO:0043966 "histone H3 acetylation"
evidence=ISO] [GO:0051091 "positive regulation of sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0004402 "histone acetyltransferase
activity" evidence=ISO] InterPro:IPR003228 InterPro:IPR009072
Pfam:PF03847 ProDom:PD012998 RGD:1592841 GO:GO:0006352
Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:CH473968 GO:GO:0005669
CTD:6883 HOVERGEN:HBG055174 KO:K03126 EMBL:BC158610 IPI:IPI00765148
RefSeq:NP_001108508.1 UniGene:Rn.7592 SMR:B0BMY3 GeneID:682902
KEGG:rno:682902 NextBio:723988 Genevestigator:B0BMY3 Uniprot:B0BMY3
Length = 161
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 57/128 (44%), Positives = 85/128 (66%)
Query: 361 RPPGSATQKPSSLALVQPNAVQTGNQSKIAGTE---SDEFGNRILTKRSIQELVNQIDPS 417
+P ++T S+A N+ G GT S E N++LTK+ +Q+LV ++DP+
Sbjct: 19 KPEPASTPPQGSMA----NSTTVGKMPGTPGTGGRLSPE-NNQVLTKKKLQDLVREVDPN 73
Query: 418 ERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSG 477
E+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE KD+ +HLER WNM +PGF
Sbjct: 74 EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGS 133
Query: 478 DEIKTFRK 485
+EI+ ++K
Sbjct: 134 EEIRPYKK 141
>UNIPROTKB|Q3T174 [details] [associations]
symbol:TAF12 "Transcription initiation factor TFIID subunit
12" species:9913 "Bos taurus" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA]
InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998
GO:GO:0006355 GO:GO:0006352 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0005669 EMBL:BC102082 IPI:IPI00691548 IPI:IPI00826150
RefSeq:NP_001029926.1 UniGene:Bt.24273 ProteinModelPortal:Q3T174
SMR:Q3T174 STRING:Q3T174 PRIDE:Q3T174 Ensembl:ENSBTAT00000037998
GeneID:614227 KEGG:bta:614227 CTD:6883 eggNOG:COG5624
GeneTree:ENSGT00390000002144 HOGENOM:HOG000035092
HOVERGEN:HBG055174 InParanoid:Q3T174 KO:K03126 OMA:KMPGTPS
OrthoDB:EOG4ZCT5X NextBio:20899006 Uniprot:Q3T174
Length = 161
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 60/127 (47%), Positives = 86/127 (67%)
Query: 360 TRPPGSATQKPSSLALVQ-PNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSE 418
T P GS +S A+V+ P TG G S E N++LTK+ +Q+LV ++DP+E
Sbjct: 25 TPPQGSMA---NSTAVVKIPGTPGTG------GRLSPE-NNQVLTKKKLQDLVREVDPNE 74
Query: 419 RLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGD 478
+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE KD+ +HLER WNM +PGF +
Sbjct: 75 QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSE 134
Query: 479 EIKTFRK 485
EI+ ++K
Sbjct: 135 EIRPYKK 141
>ZFIN|ZDB-GENE-031030-5 [details] [associations]
symbol:taf12 "TAF12 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998
ZFIN:ZDB-GENE-031030-5 GO:GO:0006352 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0005669 CTD:6883 eggNOG:COG5624
GeneTree:ENSGT00390000002144 HOGENOM:HOG000035092
HOVERGEN:HBG055174 KO:K03126 OMA:KMPGTPS OrthoDB:EOG4ZCT5X
EMBL:CR936200 EMBL:CR936484 EMBL:BC056696 EMBL:BC065878
EMBL:BC152198 IPI:IPI00489312 RefSeq:NP_938182.1
RefSeq:XP_003200277.1 UniGene:Dr.17679 SMR:Q6P013 STRING:Q6P013
Ensembl:ENSDART00000076222 Ensembl:ENSDART00000123639
Ensembl:ENSDART00000124208 GeneID:100535183 GeneID:386637
KEGG:dre:100535183 KEGG:dre:386637 InParanoid:Q6P013
NextBio:20813965 Uniprot:Q6P013
Length = 162
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 59/124 (47%), Positives = 86/124 (69%)
Query: 362 PPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSERLD 421
PP S++ S++A P + G AG S E G ++L+K+ +Q+LV +IDP+E+LD
Sbjct: 25 PPLSSSMANSTVA---PGKLP-GTPGP-AGRLSPE-GPQVLSKKKLQDLVREIDPNEQLD 78
Query: 422 PDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEIK 481
DVE++L+ IA+DF+ES+ C LA+HRKS TLE KD+ +HLER WNM +PGF DEI+
Sbjct: 79 EDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSDEIR 138
Query: 482 TFRK 485
++K
Sbjct: 139 PYKK 142
>UNIPROTKB|E2QVZ3 [details] [associations]
symbol:TAF12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847
ProDom:PD012998 GO:GO:0006352 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0005669 CTD:6883 GeneTree:ENSGT00390000002144 KO:K03126
OMA:KMPGTPS EMBL:AAEX03006463 RefSeq:XP_535337.2 UniGene:Cfa.10041
Ensembl:ENSCAFT00000018626 Ensembl:ENSCAFT00000037565 GeneID:609994
KEGG:cfa:609994 NextBio:20893961 Uniprot:E2QVZ3
Length = 161
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 55/125 (44%), Positives = 83/125 (66%)
Query: 361 RPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSERL 420
+P ++T S+A V+ G S E N++LTK+ +Q+LV ++DP+E+L
Sbjct: 19 KPEPASTPPQGSMAN-STTVVKIPGTPGTGGRLSPE-NNQVLTKKKLQDLVREVDPNEQL 76
Query: 421 DPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEI 480
D DVE++L+ IA+DF+ES+ C LA+HRKS TLE KD+ +HLER WNM +PGF +EI
Sbjct: 77 DEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEI 136
Query: 481 KTFRK 485
+ ++K
Sbjct: 137 RPYKK 141
>UNIPROTKB|Q16514 [details] [associations]
symbol:TAF12 "Transcription initiation factor TFIID subunit
12" species:9606 "Homo sapiens" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0030914 "STAGA
complex" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004402 "histone
acetyltransferase activity" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=IDA] [GO:0000125
"PCAF complex" evidence=IDA] [GO:0043966 "histone H3 acetylation"
evidence=IDA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0033276
"transcription factor TFTC complex" evidence=IDA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0051091 "positive regulation of sequence-specific
DNA binding transcription factor activity" evidence=IDA]
[GO:0008134 "transcription factor binding" evidence=IDA]
[GO:0005669 "transcription factor TFIID complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] Reactome:REACT_71
InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998
Reactome:REACT_116125 GO:GO:0016032 GO:GO:0051091 GO:GO:0003677
EMBL:CH471059 GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006368 GO:GO:0008134 GO:GO:0006367 Reactome:REACT_1788
GO:GO:0043966 GO:GO:0005669 GO:GO:0030914 GO:GO:0033276
GO:GO:0000125 EMBL:AL513497 CleanEx:HS_TAF15 CTD:6883
eggNOG:COG5624 HOGENOM:HOG000035092 HOVERGEN:HBG055174 KO:K03126
OMA:KMPGTPS OrthoDB:EOG4ZCT5X EMBL:U57693 EMBL:D50544 EMBL:X84002
EMBL:BT007031 EMBL:AY206865 EMBL:BC011986 IPI:IPI00002806
IPI:IPI00759817 PIR:JC4676 RefSeq:NP_001128690.1 RefSeq:NP_005635.1
UniGene:Hs.530251 PDB:1H3O PDBsum:1H3O ProteinModelPortal:Q16514
SMR:Q16514 DIP:DIP-496N IntAct:Q16514 MINT:MINT-3032603
STRING:Q16514 PhosphoSite:Q16514 DMDM:3024708 PaxDb:Q16514
PRIDE:Q16514 DNASU:6883 Ensembl:ENST00000263974
Ensembl:ENST00000373824 GeneID:6883 KEGG:hsa:6883 UCSC:uc001bqx.3
GeneCards:GC01M028915 HGNC:HGNC:11545 HPA:HPA008519 MIM:600773
neXtProt:NX_Q16514 PharmGKB:PA36320 InParanoid:Q16514
PhylomeDB:Q16514 EvolutionaryTrace:Q16514 GenomeRNAi:6883
NextBio:26891 Bgee:Q16514 CleanEx:HS_TAF12 Genevestigator:Q16514
GermOnline:ENSG00000120656 Uniprot:Q16514
Length = 161
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 55/125 (44%), Positives = 83/125 (66%)
Query: 361 RPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSERL 420
+P ++T S+A V+ G S E N++LTK+ +Q+LV ++DP+E+L
Sbjct: 19 KPEPASTPPQGSMAN-STAVVKIPGTPGAGGRLSPE-NNQVLTKKKLQDLVREVDPNEQL 76
Query: 421 DPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEI 480
D DVE++L+ IA+DF+ES+ C LA+HRKS TLE KD+ +HLER WNM +PGF +EI
Sbjct: 77 DEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEI 136
Query: 481 KTFRK 485
+ ++K
Sbjct: 137 RPYKK 141
>DICTYBASE|DDB_G0274697 [details] [associations]
symbol:taf12 "TFIID subunit" species:44689
"Dictyostelium discoideum" [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0005669 "transcription factor TFIID
complex" evidence=IEA;ISS] [GO:0016568 "chromatin modification"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0000124 "SAGA complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998
dictyBase:DDB_G0274697 GO:GO:0006355 GenomeReviews:CM000151_GR
GO:GO:0016568 EMBL:AAFI02000012 EMBL:AC123513 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0000124 GO:GO:0006367 GO:GO:0005669
eggNOG:COG5624 KO:K03126 RefSeq:XP_644047.2 HSSP:Q16514
ProteinModelPortal:Q555L9 SMR:Q555L9 STRING:Q555L9
EnsemblProtists:DDB0304680 GeneID:8619477 KEGG:ddi:DDB_G0274697
InParanoid:Q555L9 OMA:TNGINEA Uniprot:Q555L9
Length = 627
Score = 262 (97.3 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 52/110 (47%), Positives = 70/110 (63%)
Query: 378 PNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVE 437
PN N S ++ +L KR + EL+ QI P+E++D D EDIL +A+DFVE
Sbjct: 419 PNNSNNPNNSNNPNNPNN-IEPEVLGKRKLIELLQQISPNEKMDEDAEDILSVLADDFVE 477
Query: 438 SITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSG-DEIKTFRKP 486
S F C+LAKHR S TLE KD+ HLE+NWN+ +PGF ++ KTF+KP
Sbjct: 478 STVAFACTLAKHRNSTTLEVKDLQCHLEKNWNIRVPGFGNVEQYKTFKKP 527
Score = 59 (25.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 27/114 (23%), Positives = 43/114 (37%)
Query: 281 GKPPLAPPSTYRP--QMNTPSMQQRSHIPQQHSPLSTNLXXXXXXXXXXXXXKPSHQLPD 338
G+P P Y+P Q+N QQ+ PQQ P + P Q
Sbjct: 36 GQPQQQP--VYKPVIQINKTLPQQQ---PQQQIPQQQQIYKQAPQQIYNQISPPIQQ--- 87
Query: 339 HYGQQFSSPRVPQSSPHQQQITRPPGSATQKPSSLALVQPNAVQTGNQSKIAGT 392
+SP + ++P +T P + T S+ + +PN + S I+ T
Sbjct: 88 ----NINSPTIVNNTPPTPVVTTPTTTTTTTQSNYSTNRPN-ININPASPISST 136
>SGD|S000002552 [details] [associations]
symbol:TAF12 "Subunit (61/68 kDa) of TFIID and SAGA
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0017025
"TBP-class protein binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IMP] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IDA;IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005669 "transcription factor
TFIID complex" evidence=IEA;IDA] [GO:0016573 "histone acetylation"
evidence=IDA] [GO:0016568 "chromatin modification"
evidence=IDA;IMP] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0001075 "RNA polymerase II core promoter sequence-specific DNA
binding transcription factor activity involved in preinitiation
complex assembly" evidence=IC] [GO:0032947 "protein complex
scaffold" evidence=IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0046695 "SLIK (SAGA-like) complex"
evidence=IDA] InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847
ProDom:PD012998 SGD:S000002552 GO:GO:0006355 GO:GO:0016573
EMBL:BK006938 GO:GO:0003682 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0000124 GO:GO:0046695 GO:GO:0032947 GO:GO:0001102
GO:GO:0017025 EMBL:Z50046 GO:GO:0005669 GO:GO:0051123
eggNOG:COG5624 GeneTree:ENSGT00390000002144 KO:K03126
OrthoDB:EOG45TGXB PIR:S57972 RefSeq:NP_010429.1
ProteinModelPortal:Q03761 SMR:Q03761 DIP:DIP-1302N IntAct:Q03761
MINT:MINT-408447 STRING:Q03761 PaxDb:Q03761 PeptideAtlas:Q03761
EnsemblFungi:YDR145W GeneID:851723 KEGG:sce:YDR145W CYGD:YDR145w
HOGENOM:HOG000141888 OMA:YRSNRPT NextBio:969433
Genevestigator:Q03761 GermOnline:YDR145W Uniprot:Q03761
Length = 539
Score = 277 (102.6 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 58/148 (39%), Positives = 91/148 (61%)
Query: 345 SSPRVPQSSPHQQQITRPPGSATQKPSSL--ALVQPNAVQTGNQSKIAGTESDEFGNRIL 402
+ P +P S + P + +P+ + + +A+ T +K+ E D R++
Sbjct: 358 TEPAIPISENISTKTPAPVAYRSNRPTITGGSAMNASALNTPATTKLPPYEMDT--QRVM 415
Query: 403 TKRSIQELVNQI-----DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEA 457
+KR ++ELV + D +D DVE++L+D+A+DFV ++T F C LAKHRKSD LEA
Sbjct: 416 SKRKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDNLEA 475
Query: 458 KDILVHLERNWNMTLPGFSGDEIKTFRK 485
+DI +HLERNWN+ +PG+S DEI++ RK
Sbjct: 476 RDIQLHLERNWNIRIPGYSADEIRSTRK 503
>UNIPROTKB|I3LKU2 [details] [associations]
symbol:TAF12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051091 "positive regulation of sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0043966
"histone H3 acetylation" evidence=IEA] [GO:0033276 "transcription
factor TFTC complex" evidence=IEA] [GO:0030914 "STAGA complex"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005669 "transcription
factor TFIID complex" evidence=IEA] [GO:0004402 "histone
acetyltransferase activity" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000125
"PCAF complex" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR003228
InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998 GO:GO:0051091
GO:GO:0003677 GO:GO:0003700 GO:GO:0003713 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0043966 GO:GO:0004402
GO:GO:0005669 GO:GO:0030914 GO:GO:0033276 GO:GO:0000125
GeneTree:ENSGT00390000002144 OMA:KMPGTPS EMBL:FP565629
Ensembl:ENSSSCT00000027861 Uniprot:I3LKU2
Length = 161
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 50/125 (40%), Positives = 78/125 (62%)
Query: 361 RPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSERL 420
+P ++T S+A V+ G S E N++LTK+ +Q+LV ++DP+E+L
Sbjct: 19 KPEPASTPPQGSMAN-STTVVKIPGTPGTGGRLSPE-NNQVLTKKKLQDLVREVDPNEQL 76
Query: 421 DPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEI 480
D DVE+++ ++ F S+ C LA+HRKS TLE KD+ +HLER WNM +PGF +EI
Sbjct: 77 DEDVEELVNELMSFFCXSVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEI 136
Query: 481 KTFRK 485
+ ++K
Sbjct: 137 RPYKK 141
>FB|FBgn0011290 [details] [associations]
symbol:Taf12 "TBP-associated factor 12" species:7227
"Drosophila melanogaster" [GO:0042803 "protein homodimerization
activity" evidence=IPI] [GO:0005669 "transcription factor TFIID
complex" evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0001129 "TBP-class protein binding RNA polymerase II
transcription factor activity involved in preinitiation complex
assembly" evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0001075 "RNA polymerase II core promoter
sequence-specific DNA binding transcription factor activity
involved in preinitiation complex assembly" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0000124 "SAGA
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998
EMBL:AE014297 GO:GO:0022008 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0000124 GO:GO:0005669 GO:GO:0001129 CTD:6883 eggNOG:COG5624
GeneTree:ENSGT00390000002144 KO:K03126 EMBL:U06450 EMBL:U06456
EMBL:S67741 EMBL:AY061435 PIR:A49453 PIR:S42222 RefSeq:NP_524320.1
RefSeq:NP_731616.1 RefSeq:NP_731617.2 UniGene:Dm.2806
ProteinModelPortal:P49905 SMR:P49905 DIP:DIP-779N IntAct:P49905
MINT:MINT-319520 STRING:P49905 PaxDb:P49905 PRIDE:P49905
EnsemblMetazoa:FBtr0082440 EnsemblMetazoa:FBtr0082442 GeneID:41406
KEGG:dme:Dmel_CG17358 FlyBase:FBgn0011290 InParanoid:P49905
OMA:VKSTSAF OrthoDB:EOG4DJHCX PhylomeDB:P49905 GenomeRNAi:41406
NextBio:823701 Bgee:P49905 GermOnline:CG17358 Uniprot:P49905
Length = 196
Score = 221 (82.9 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 47/140 (33%), Positives = 79/140 (56%)
Query: 350 PQSSPHQQQ-ITRPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNR---ILTKR 405
P +SP Q +T S++Q ++ + SK + S G+ +LTK
Sbjct: 36 PMASPSQHSPMTNNSNSSSQNGGPVSGLGTGTGPISGGSKSSNHTSSAAGSENTPMLTKP 95
Query: 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465
+ ELV ++D + +LD DVE++L+ I +DFVE + AKHRKS+ +E +D+ +H E
Sbjct: 96 RLTELVREVDTTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDVQLHFE 155
Query: 466 RNWNMTLPGFSGDEIKTFRK 485
R +NM +PGF DE++ +++
Sbjct: 156 RKYNMWIPGFGTDELRPYKR 175
Score = 40 (19.1 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 307 PQQHSPLSTN 316
P QHSP++ N
Sbjct: 40 PSQHSPMTNN 49
>UNIPROTKB|J9NXV6 [details] [associations]
symbol:J9NXV6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847
ProDom:PD012998 GO:GO:0006352 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0005669 GeneTree:ENSGT00390000002144 EMBL:AAEX03008539
Ensembl:ENSCAFT00000005499 OMA:NFSSIKL Uniprot:J9NXV6
Length = 161
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 51/114 (44%), Positives = 73/114 (64%)
Query: 360 TRPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQIDPSER 419
T P GS S+ + P TG G S E N++LTK+ +Q+LV ++DP+E+
Sbjct: 57 TPPQGSMAN--STTVVKVPGTPGTG------GRLSPE-NNQVLTKKKLQDLVREVDPNEQ 107
Query: 420 LDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLP 473
L+ DVE++L+ IA+DF+ES+ C LA+HRKS TLE KD+ +HLER NM +P
Sbjct: 108 LNEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQRNMWIP 161
>CGD|CAL0005789 [details] [associations]
symbol:orf19.470 species:5476 "Candida albicans" [GO:0032947
"protein complex scaffold" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0000124 "SAGA
complex" evidence=IEA] [GO:0046695 "SLIK (SAGA-like) complex"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0016573 "histone acetylation" evidence=IEA]
[GO:0051123 "RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] InterPro:IPR003228
InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998 CGD:CAL0005789
GO:GO:0006352 Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:AACQ01000055
GO:GO:0005669 eggNOG:COG5624 KO:K03126 RefSeq:XP_717334.1
ProteinModelPortal:Q5A6T4 STRING:Q5A6T4 GeneID:3640954
KEGG:cal:CaO19.470 Uniprot:Q5A6T4
Length = 750
Score = 243 (90.6 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 52/135 (38%), Positives = 80/135 (59%)
Query: 360 TRPP--GSATQKPSSLALVQP--NAVQTGNQSKIAGTESDEFGNRILTKRSIQELVNQI- 414
TRP G A P S+ L P + T + G R+L KR + +L+N I
Sbjct: 592 TRPSLTGGAAN-PMSILLDTPAITKLPTFDIEGDTGVIDSSTSGRVLNKRKLGDLINTIG 650
Query: 415 ----DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNM 470
D +D +VE+ L+D+A++F+ S+T F C LAKHRK D++EA+D+ +HL++NWN+
Sbjct: 651 VDEGDGKTSIDGNVEEFLLDLADEFIHSVTSFACRLAKHRKVDSIEARDVQLHLDKNWNI 710
Query: 471 TLPGFSGDEIKTFRK 485
+PG++ DEI+ RK
Sbjct: 711 KIPGYAMDEIRNTRK 725
>ASPGD|ASPL0000036544 [details] [associations]
symbol:AN2769 species:162425 "Emericella nidulans"
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] InterPro:IPR003228
InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998 EMBL:BN001306
GO:GO:0006352 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0003743
EMBL:AACD01000049 GO:GO:0005669 eggNOG:COG5624 KO:K03126
OrthoDB:EOG45TGXB RefSeq:XP_660373.1 ProteinModelPortal:Q5B9L1
SMR:Q5B9L1 EnsemblFungi:CADANIAT00010338 GeneID:2873945
KEGG:ani:AN2769.2 HOGENOM:HOG000193877 OMA:YNIRIPG Uniprot:Q5B9L1
Length = 588
Score = 207 (77.9 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 49/141 (34%), Positives = 77/141 (54%)
Query: 349 VPQSSPHQQQITRPPGSATQKPSSLALVQPNAVQTGNQSKIAGTESDEFGNRILTKRSIQ 408
VP P RP S+ ++ ++ A+Q K G + G R+L+K+ +
Sbjct: 429 VPPPKPVPMAPDRPTLSSGPSHGAMGMMGQPAIQ-----KHPGYVLEGEGQRVLSKKMLD 483
Query: 409 ELVNQID---PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465
LV Q+ E L PD E+ ++ +A+DFV+ + C LAK R S +LE +DI + LE
Sbjct: 484 VLVRQVTGGGEGEGLTPDAEEFMLQMADDFVDDVITAACRLAKLRHSSSLEIRDIQLVLE 543
Query: 466 RNWNMTLPGFSGDEIKTFRKP 486
RN+NM + GFS D+++T +KP
Sbjct: 544 RNYNMRISGFSTDDLRTVKKP 564
Score = 44 (20.5 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 272 QPWLSSGSQGKPPLAPPSTYRPQMNTPSMQ 301
QP +S +QG P + PQ P Q
Sbjct: 292 QPGQASSNQGPTPAPAVAAGTPQQQPPQSQ 321
>UNIPROTKB|G4NDQ9 [details] [associations]
symbol:MGG_00885 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847
ProDom:PD012998 EMBL:CM001235 GO:GO:0006352 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0005669 KO:K03126 RefSeq:XP_003718081.1
ProteinModelPortal:G4NDQ9 EnsemblFungi:MGG_00885T0 GeneID:2674565
KEGG:mgr:MGG_00885 Uniprot:G4NDQ9
Length = 814
Score = 196 (74.1 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 69/229 (30%), Positives = 107/229 (46%)
Query: 273 PWLSSGSQGKPPLAPPSTYRPQMNTPSMQQRSHIPQQHSPLSTNLXXXXXXXX---XXXX 329
P + G P PP+ + Q Q++H PQ H P T +
Sbjct: 574 PMSAGGVMASAP--PPNQIQQQ------HQQAH-PQ-HQPNGTVIPTGHPHAHPGQQQIQ 623
Query: 330 XKPSHQLPDHYGQQFSSPRVPQSSPHQQQITRPPGSATQKPSSLA-LVQPNAVQTGNQSK 388
+ SH + S P Q +P Q + G +P+ L P V NQ
Sbjct: 624 QRESHTMVPRNPIAKSLPEKAQQTP--QPVAMTGGLGPGRPTMTGGLSTPGGVM--NQPV 679
Query: 389 IA----GT-ESDEFGNRILTKRSIQELVNQI--DPSERLD-----PDVEDILVDIAEDFV 436
IA GT ++ G+R+L+K+ + ELV Q+ +E LD P+VE+ ++ +A+ FV
Sbjct: 680 IARHPPGTIVTENDGDRVLSKKKLDELVRQVCGGTAEGLDGNLLTPEVEESVLTLADSFV 739
Query: 437 ESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRK 485
+++ C AK R S LE +DI + LER +N+ +PG+S DE++T RK
Sbjct: 740 DNVLHSACRNAKERGSKVLEIRDIQLVLERTYNIRIPGYSADELRTVRK 788
>UNIPROTKB|D4A8J1 [details] [associations]
symbol:D4A8J1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005669 "transcription factor TFIID
complex" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] InterPro:IPR003228 InterPro:IPR009072
Pfam:PF03847 ProDom:PD012998 GO:GO:0051091 GO:GO:0003677
GO:GO:0003700 GO:GO:0003713 Gene3D:1.10.20.10 GO:GO:0006367
GO:GO:0043966 GO:GO:0004402 GO:GO:0005669 GO:GO:0030914
GO:GO:0033276 GO:GO:0000125 OrthoDB:EOG4ZCT5X IPI:IPI00780698
Ensembl:ENSRNOT00000057611 OMA:GSIANNA Uniprot:D4A8J1
Length = 152
Score = 150 (57.9 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 41/116 (35%), Positives = 59/116 (50%)
Query: 369 KPSSLALVQPNAVQTGNQSKIAGTE----SDEFGNRILTKRSIQELVNQIDPSERLDPDV 424
KP + Q ++ KI GT S E N K+ +LV ++DP+++LD DV
Sbjct: 18 KPEPASPAQ-GSIANNATGKIRGTPGTGLSPENNNNNNKKKKKTDLVRKVDPNQQLDEDV 76
Query: 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEI 480
E L IA+ S+ C LA+ KS T E KD+ +H + WNM +PG +EI
Sbjct: 77 EKTLPQIAD----SVVTAACQLARP-KSGTGEVKDVQLHPDCLWNMWIPGLGSEEI 127
>WB|WBGene00006396 [details] [associations]
symbol:taf-12 species:6239 "Caenorhabditis elegans"
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847 ProDom:PD012998
GO:GO:0005634 GO:GO:0009792 GO:GO:0006352 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0040035 EMBL:AL132860 GO:GO:0005669
GeneTree:ENSGT00390000002144 GeneID:176617 KEGG:cel:CELE_Y56A3A.4
CTD:176617 HOGENOM:HOG000019961 RefSeq:NP_001255144.1
ProteinModelPortal:Q9U226 SMR:Q9U226 DIP:DIP-24869N IntAct:Q9U226
MINT:MINT-1062984 STRING:Q9U226 EnsemblMetazoa:Y56A3A.4a
UCSC:Y56A3A.4 WormBase:Y56A3A.4a InParanoid:Q9U226 OMA:PTEAHKQ
NextBio:893318 ArrayExpress:Q9U226 Uniprot:Q9U226
Length = 342
Score = 149 (57.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 58/202 (28%), Positives = 88/202 (43%)
Query: 281 GKPPLAPPSTYRPQMNTPSMQQRSHIPQQHSPLSTNLXXXXXXXXXXXXXKPSHQLPDHY 340
G P P + P + MQQR P Q ++ P H +
Sbjct: 106 GIPQQQQPQQFTPNGQSMQMQQR---PMQMG-MAQGPGPSGHLMGMVGGPPPQHMMQQQG 161
Query: 341 G---QQF---SSPRV--PQSS---PHQQQITRPPGSAT-QKPSSLALVQPNAVQTGNQSK 388
G QF SSP PQ HQQQ +PP S Q+P + QP Q
Sbjct: 162 GGGPPQFVPNSSPMPLPPQQIMQVQHQQQHQQPPPSQQIQQPP---IPQPQQQQAPPPQM 218
Query: 389 IAGTESDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAK 448
I +G+ I+ K + +L+ QI + L+ +V+D+LV+ A+DFV S+ C + K
Sbjct: 219 IPAAVP--YGS-IMEKSKLDDLMQQISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIK 275
Query: 449 HRKSDTLEAKDILVHLERNWNM 470
+R+ +E++DI L+ +NM
Sbjct: 276 NREVKKIESRDIEFILKNVYNM 297
>FB|FBgn0031623 [details] [associations]
symbol:Taf12L "TBP-associated factor 30kD subunit alpha-2"
species:7227 "Drosophila melanogaster" [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0005669 "transcription factor TFIID complex" evidence=ISS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0007140 "male
meiosis" evidence=NAS] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] [GO:0001673 "male germ cell nucleus"
evidence=IDA] InterPro:IPR003228 InterPro:IPR009072 Pfam:PF03847
ProDom:PD012998 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0001673
GO:GO:0006367 GO:GO:0005669 EMBL:AY752880 ProteinModelPortal:Q5UEC2
SMR:Q5UEC2 STRING:Q5UEC2 PRIDE:Q5UEC2 FlyBase:FBgn0031623
InParanoid:Q5UEC2 OrthoDB:EOG4X69RT ArrayExpress:Q5UEC2 Bgee:Q5UEC2
Uniprot:Q5UEC2
Length = 138
Score = 111 (44.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460
I++K ++ + V +ID + LD D++ IA+ FV ++M LAK+RKSD + D+
Sbjct: 65 IISKTNMLQFVQKIDANSSLDDQGCDMMARIADAFVNDVSMRMVKLAKYRKSD-VSVLDL 123
Query: 461 LVHLERNWNMTLP 473
L+R +NM P
Sbjct: 124 KFILKREFNMEFP 136
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 496 289 0.00088 115 3 11 23 0.42 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 595 (63 KB)
Total size of DFA: 201 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.84u 0.12s 28.96t Elapsed: 00:00:02
Total cpu time: 28.84u 0.12s 28.96t Elapsed: 00:00:02
Start: Tue May 21 08:22:12 2013 End: Tue May 21 08:22:14 2013