BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010992
(496 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VE65|TAF12_MOUSE Transcription initiation factor TFIID subunit 12 OS=Mus musculus
GN=Taf12 PE=1 SV=1
Length = 161
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 70/89 (78%)
Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE K
Sbjct: 55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114
Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPV 487
D+ +HLER WNM +PGF +EI+ ++K
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKAC 143
>sp|Q16514|TAF12_HUMAN Transcription initiation factor TFIID subunit 12 OS=Homo sapiens
GN=TAF12 PE=1 SV=1
Length = 161
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 70/89 (78%)
Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE K
Sbjct: 55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114
Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPV 487
D+ +HLER WNM +PGF +EI+ ++K
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKAC 143
>sp|Q3T174|TAF12_BOVIN Transcription initiation factor TFIID subunit 12 OS=Bos taurus
GN=TAF12 PE=2 SV=1
Length = 161
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 70/89 (78%)
Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE K
Sbjct: 55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114
Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPV 487
D+ +HLER WNM +PGF +EI+ ++K
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKAC 143
>sp|Q03761|TAF12_YEAST Transcription initiation factor TFIID subunit 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF12 PE=1
SV=1
Length = 539
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%), Gaps = 5/91 (5%)
Query: 400 RILTKRSIQELVNQI-----DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDT 454
R+++KR ++ELV + D +D DVE++L+D+A+DFV ++T F C LAKHRKSD
Sbjct: 413 RVMSKRKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDN 472
Query: 455 LEAKDILVHLERNWNMTLPGFSGDEIKTFRK 485
LEA+DI +HLERNWN+ +PG+S DEI++ RK
Sbjct: 473 LEARDIQLHLERNWNIRIPGYSADEIRSTRK 503
>sp|Q555L9|TAF12_DICDI Transcription initiation factor TFIID subunit 12 OS=Dictyostelium
discoideum GN=TAF12 PE=3 SV=2
Length = 627
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Query: 400 RILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKD 459
+L KR + EL+ QI P+E++D D EDIL +A+DFVES F C+LAKHR S TLE KD
Sbjct: 440 EVLGKRKLIELLQQISPNEKMDEDAEDILSVLADDFVESTVAFACTLAKHRNSTTLEVKD 499
Query: 460 ILVHLERNWNMTLPGFSGDE-IKTFRKP 486
+ HLE+NWN+ +PGF E KTF+KP
Sbjct: 500 LQCHLEKNWNIRVPGFGNVEQYKTFKKP 527
>sp|O13722|TAF12_SCHPO Transcription initiation factor TFIID subunit 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf12 PE=1 SV=1
Length = 450
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Query: 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEA 457
GNR+L+KR + +L+ QID E+++P+VE++L++IA++FVES+T F C LAKHRKSDTL+
Sbjct: 339 GNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTLDV 398
Query: 458 KDILVHLERNWNMTLPGFSGDEI-KTFRK 485
+D+ +HLERNWN+ LPGF+ D+I K+ RK
Sbjct: 399 RDVQLHLERNWNIRLPGFASDDIVKSARK 427
>sp|Q91858|TAF12_XENLA Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis
GN=taf12 PE=2 SV=1
Length = 164
Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 390 AGTESDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKH 449
G + N++L+K+ + +LV ++DP+E+LD DVE++L+ IA+DF+ES+ C LA+H
Sbjct: 49 GGGRASPEANQVLSKKKLHDLVREVDPNEQLDEDVEEMLLQIADDFIESVVSAACQLARH 108
Query: 450 RKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRK 485
RKS+TLE KD+ +HLER WNM +PGF +EI+ ++K
Sbjct: 109 RKSNTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKK 144
>sp|P49905|TAF12_DROME Transcription initiation factor TFIID subunit 12 OS=Drosophila
melanogaster GN=Taf12 PE=1 SV=1
Length = 196
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 59/86 (68%)
Query: 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460
+LTK + ELV ++D + +LD DVE++L+ I +DFVE + AKHRKS+ +E +D+
Sbjct: 91 MLTKPRLTELVREVDTTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDV 150
Query: 461 LVHLERNWNMTLPGFSGDEIKTFRKP 486
+H ER +NM +PGF DE++ +++
Sbjct: 151 QLHFERKYNMWIPGFGTDELRPYKRA 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.124 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,742,952
Number of Sequences: 539616
Number of extensions: 11038037
Number of successful extensions: 236076
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2365
Number of HSP's successfully gapped in prelim test: 5328
Number of HSP's that attempted gapping in prelim test: 77947
Number of HSP's gapped (non-prelim): 61864
length of query: 496
length of database: 191,569,459
effective HSP length: 122
effective length of query: 374
effective length of database: 125,736,307
effective search space: 47025378818
effective search space used: 47025378818
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)