BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010994
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN 196
L N Y +Q D+A+ +++K E+ + YN + Y K G Y++ + KA
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYN-LGNAYYKQGDYDEA--IEYYQKALE 71
Query: 197 IFPDNF-SYRICINSYGARSDL-EGMEIILREMESQPH 232
++P+N ++ N+Y + D E +E + +E P+
Sbjct: 72 LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
+ KN++ NF+ + + G + DL+ +E L+EM ++ + L+ S A+H +
Sbjct: 161 RTKNVWCANFNGGMQVVLAGVKDDLKALEPTLKEMGAKRVVFLEMSV---ASHCPFLEPM 217
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLI-SLYASLGNKSEVLRLWDLEKTACKRY 305
I K ++L+K+ KD + + + + NK++ + L L+ T RY
Sbjct: 218 IFKFQELLEKS-----LKDKFHFEIISNATNEAYHNKAKAVELLSLQLTQPVRY 266
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN 196
L N Y +Q D+A+ +++K E+ + YN + Y K G Y++ + KA
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN-LGNAYYKQGDYDEA--IEYYQKALE 63
Query: 197 IFPDNF-SYRICINSYGARSDL-EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254
+ P + ++ N+Y + D E +E + +E P W +A Y K D
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA---YYKQGDYD 120
Query: 255 KASDVLKKA 263
+A + +KA
Sbjct: 121 EAIEYYQKA 129
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 193 KAKNIFPDNFSYRI--CINSYGARSDLEG---MEIILREMESQPHIVLDWSTYASAAHFY 247
KA + PDN ++ + ++ EG +E IL ++ SQP+++ AA FY
Sbjct: 206 KAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVL------RYAAKFY 259
Query: 248 IKANLIDKASDVLKKAEE 265
+ N +KA ++LKKA E
Sbjct: 260 RRKNSWNKALELLKKALE 277
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 193 KAKNIFPDNFSYRI--CINSYGARSDLEG---MEIILREMESQPHIVLDWSTYASAAHFY 247
KA + PDN ++ + ++ EG +E IL ++ SQP+++ AA FY
Sbjct: 206 KAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVL------RYAAKFY 259
Query: 248 IKANLIDKASDVLKKAEE 265
+ N +KA ++LKKA E
Sbjct: 260 RRKNSWNKALELLKKALE 277
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 131 YQTYGALLNCYVR-QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189
Y +L+N YV Q+ T+ AL + +G+ L T + + Y + + +VPD L
Sbjct: 47 YTWLRSLMNRYVNFQQATEDALRF--TCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSL 104
Query: 190 TEMKAKNI 197
E+K + +
Sbjct: 105 RELKRRGL 112
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 131 YQTYGALLNCYVR-QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189
Y +L+N YV Q+ T+ AL + +G+ L T + + Y + + +VPD L
Sbjct: 47 YTWLRSLMNRYVNFQQATEDALRF--TCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSL 104
Query: 190 TEMKAKNI 197
E+K + +
Sbjct: 105 RELKRRGL 112
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 387 YFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV-QDVEAFVAALRT 445
Y DA KT ++C K +V GW ++ + ++ GD + Q VE L+
Sbjct: 698 YMDAAKTSLRYRCFKG--NVLQSNTGWAIGQRI--NSWARTGDGNTTYQLVE---LQLKN 750
Query: 446 VIPMNRQMYHAF--IKANIRNGKGVDELL 472
+ N YHA I N N GVDE+L
Sbjct: 751 AMYANLFDYHAPFQIAGNFGNTSGVDEML 779
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 387 YFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV-QDVEAFVAALRT 445
Y DA KT ++C K +V GW ++ + ++ GD + Q VE L+
Sbjct: 699 YMDAAKTSLRYRCFKG--NVLQSNTGWAIGQRI--NSWARTGDGNTTYQLVE---LQLKN 751
Query: 446 VIPMNRQMYHAF--IKANIRNGKGVDELL 472
+ N YHA I N N GVDE+L
Sbjct: 752 AMYANLFDYHAPFQIDGNFGNTSGVDEML 780
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 387 YFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV-QDVEAFVAALRT 445
Y DA KT ++C K +V GW ++ + ++ GD + Q VE L+
Sbjct: 699 YMDAAKTSLRYRCFKG--NVLQSNTGWAIGQRI--NSWARTGDGNTTYQLVE---LQLKN 751
Query: 446 VIPMNRQMYHAF--IKANIRNGKGVDELL 472
+ N YHA I N N GVDE+L
Sbjct: 752 AMYANLFDYHAPFQIDGNFGNTSGVDEML 780
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN 196
L N Y +Q KA+ +++K E+ ++ YN + Y K G Y+K + KA
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYN-LGNAYYKQGDYQKA--IEYYQKALE 71
Query: 197 IFPDNFS--YRICINSYGARSDLE-GMEIILREMESQPH 232
+ P+N YR N+Y + D + +E + +E P+
Sbjct: 72 LDPNNAKAWYRRG-NAYYKQGDYQKAIEDYQKALELDPN 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,933,578
Number of Sequences: 62578
Number of extensions: 630810
Number of successful extensions: 1617
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 29
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)