BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010994
(496 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 588 bits (1517), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/477 (58%), Positives = 356/477 (74%), Gaps = 1/477 (0%)
Query: 15 NAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRK 74
N + SR+YYTNR+ KTTLYS ISPLG+P + + PEL NWV+ G KV V EL RI+ DLR+
Sbjct: 10 NLIASRYYYTNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRR 69
Query: 75 RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY 134
RKRF ALEVS WMN G+CVF+P +HAV LDLIGRV+GF++AE YF NLK+ K +TY
Sbjct: 70 RKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTY 129
Query: 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194
GALLNCYVRQ+ +K+L HF KMKEMG S+LTYN+IMCLY+ GQ+EKVP VL EMK
Sbjct: 130 GALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKE 189
Query: 195 KNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254
+N+ PDN+SYRICIN++GA DLE + LR+ME + I +DW+TYA AA FYI D
Sbjct: 190 ENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCD 249
Query: 255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314
+A ++LK +E RLE+KDG GYN LI+LYA LG K EVLRLWDLEK CKR IN+DY+T+L
Sbjct: 250 RAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVL 309
Query: 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374
++L+K+ EAE+VL EW+ SGN YD R+PN VI GY + + AEA+LEDL +GKA
Sbjct: 310 QSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKA 369
Query: 375 TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ 434
TTP SW +VA Y + G E F+CMK AL V V + W+P ++TS+LS +GDEGS++
Sbjct: 370 TTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLK 429
Query: 435 DVEAFVAALRTVIPMNRQMYHAFIKANIR-NGKGVDELLDSMKADGIDEDEETKEIL 490
+VE+FVA+LR I +N+QMYHA +KA+IR G+ +D LL MK D I+ DEET IL
Sbjct: 430 EVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 169/459 (36%), Positives = 257/459 (55%), Gaps = 10/459 (2%)
Query: 31 TLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNR 90
TL ++ G+P I LD W+ GN V+ EL II+ LRK RFS AL++SDWM+
Sbjct: 39 TLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSE 98
Query: 91 KGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKA 150
+ + D A++LDLI +V G AE +F + + + Y YGALLNCY ++ KA
Sbjct: 99 HRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKA 158
Query: 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210
F++MKE+G L YN ++ LY +TG+Y V +L EM+ + + PD F+ +++
Sbjct: 159 EQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHA 218
Query: 211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-Q 269
Y SD+EGME L E+ + LDW TYA A+ YIKA L +KA ++L+K+E+ + Q
Sbjct: 219 YSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQ 278
Query: 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
K Y L+S Y + G K EV RLW L K Y N YI+++ AL+K+ + EE EK+
Sbjct: 279 KRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFY-NTGYISVISALLKMDDIEEVEKI 337
Query: 330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
++EWE + +D RIP+ +I GYC G+++ AE ++ LV+K + ++W +A GY
Sbjct: 338 MEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKM 397
Query: 390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
AGK E+ + K A+ V GW+P V+ S + L EG +D+E LR +
Sbjct: 398 AGKMEKAVEKWKRAIE--VSKPGWRPHQVVLMSCVDYL--EGQ-RDMEGLRKILRLLSER 452
Query: 450 NRQMYHAFIKANIRNGKGVD-ELLDSMKADGIDEDEETK 487
Y + NG G+ +++D+M E+ E +
Sbjct: 453 GHISYDQLLYD--MNGAGLSWKIVDAMGKGRYVEEREVR 489
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 275 bits (702), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 153/430 (35%), Positives = 242/430 (56%), Gaps = 4/430 (0%)
Query: 31 TLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNR 90
+Y IS + P L+ W K G K+ EL R++++LRK KR +QALEV DWMN
Sbjct: 68 AIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNN 127
Query: 91 KGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDK 149
+G + D A+QLDLIG+V G AE +F L ++ K + YG+LLN YVR + +K
Sbjct: 128 RGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREK 187
Query: 150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209
A + M++ G AL L +N +M LY +Y+KV ++ EMK K+I D +SY I ++
Sbjct: 188 AEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLS 247
Query: 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269
S G+ +E ME++ ++M+S I +W+T+++ A YIK +KA D L+K E R+
Sbjct: 248 SCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG 307
Query: 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
++ I Y++L+SLY SLGNK E+ R+W + K+ N Y ++ +L+++G+ E AEKV
Sbjct: 308 RNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKV 367
Query: 330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
+EW +SYD RIPN ++ Y N ++ AE + + +VE G + ++W ++A G+
Sbjct: 368 YEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTR 427
Query: 390 AGKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIP 448
C++ A S EG W+P +++ +E V EA + LR
Sbjct: 428 KRCISEALTCLRNAFS--AEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGD 485
Query: 449 MNRQMYHAFI 458
+ + Y A I
Sbjct: 486 LEDKSYLALI 495
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 271 bits (694), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 251/464 (54%), Gaps = 9/464 (1%)
Query: 32 LYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRK 91
LY+ + G ++ +L+ ++K V E+ I+ LR R + AL++S+ M +
Sbjct: 25 LYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEER 84
Query: 92 GICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKAL 151
G+ D A+ LDL+ + + E+YF +L + KT TYG+LLNCY ++ T+KA
Sbjct: 85 GMNKTV-SDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAE 143
Query: 152 SHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSY 211
KMKE+ I S+++YN +M LY+KTG+ EKVP ++ E+KA+N+ PD+++Y + + +
Sbjct: 144 GLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRAL 203
Query: 212 GARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD 271
A +D+ G+E ++ EM + DW+TY++ A Y+ A L KA L++ E + Q+D
Sbjct: 204 AATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRD 263
Query: 272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLK 331
Y FLI+LY LG +EV R+W + A + N Y+ M++ L+KL + AE + K
Sbjct: 264 FTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFK 323
Query: 332 EWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391
EW+ + ++YD RI N +I Y GL+Q A + E +G +W + Y +G
Sbjct: 324 EWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSG 383
Query: 392 KTERGFQCMKAALSVYVEGKG----WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI 447
R +CM A+S+ GKG W P P+ + +++S + V E + L+
Sbjct: 384 DMARALECMSKAVSI---GKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGT 440
Query: 448 P-MNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
+ +++ I+ GK + +K + ++ +E TK++L
Sbjct: 441 DNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLL 484
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 247/461 (53%), Gaps = 4/461 (0%)
Query: 31 TLYSIISPLGN-PGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMN 89
++Y +S LG G ++E L+ +V G V+ +L R +DLRK ++ +ALE+ +WM
Sbjct: 40 SIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWME 99
Query: 90 RKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDK 149
RK I F DHA++L+LI + G +AE+YF++L D K TYG+LLNCY +++ K
Sbjct: 100 RKEI-AFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVK 158
Query: 150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209
A +HF M ++ ++L +N++M +Y GQ EKVP ++ MK K+I P + +Y + I
Sbjct: 159 AKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQ 218
Query: 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269
S G+ DL+G+E +L EM+++ + W+T+A+ A YIK L KA + LK E +
Sbjct: 219 SCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNP 278
Query: 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
Y+FLI+LY + N SEV R+WDL K N Y+TML AL KL + + +KV
Sbjct: 279 DVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKV 338
Query: 330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
EWE + +YD R+ N I Y + + AEA+ ++K K + ++
Sbjct: 339 FAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLK 398
Query: 390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
+ + + +AA V + K W ++I+S + V E F L P+
Sbjct: 399 NDQADLALKHFEAA--VLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPL 456
Query: 450 NRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
+ + Y +K + GK ++ ++ GI DEE + +L
Sbjct: 457 SSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 247/442 (55%), Gaps = 7/442 (1%)
Query: 53 WVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH 112
W + G+ VR EL RI+R+LRK KR+ ALE+ +WM + D+AV LDLI ++
Sbjct: 84 WKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIR 143
Query: 113 GFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI 172
G SAE +F ++ D + + +LL+ YV+ + +DKA + F KM E G S L YN +
Sbjct: 144 GLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHM 203
Query: 173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME-IILREMESQP 231
+ +Y GQ+EKVP ++ E+K + PD +Y + + ++ + +D+EG E + L+ E +
Sbjct: 204 LSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKL 262
Query: 232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEV 291
+ DW TY+ + Y K + ++KA LK+ E+ + +K+ + Y LISL+A+LG+K V
Sbjct: 263 NP--DWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGV 320
Query: 292 LRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351
W K++ K+ + +Y++M+ A++KLGE E+A+ + EWE + D RIPN ++
Sbjct: 321 NLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAE 380
Query: 352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK 411
Y N V E E +VEKG + ++W ++ Y E+ C A+ K
Sbjct: 381 YMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSV---K 437
Query: 412 GWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDEL 471
W + +++ +L ++G+V+ E + L+ +N Q+Y++ ++ + G+ +
Sbjct: 438 KWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIV 497
Query: 472 LDSMKADGIDEDEETKEILVCT 493
+ M D ++ DEETKE++ T
Sbjct: 498 EERMAKDNVELDEETKELIRLT 519
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 241 bits (616), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 240/465 (51%), Gaps = 5/465 (1%)
Query: 32 LYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRK 91
LY +S L G + L+ ++ G VR +L R + LRK +R A E+ DWM ++
Sbjct: 73 LYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKR 132
Query: 92 GICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQ-TYGALLNCYVRQRQTDKA 150
+ F+ DHA+ LDLIG+ G +AE+YF+NL K +Q TYGAL+NCY + + +KA
Sbjct: 133 KM-TFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKA 191
Query: 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210
+HF M E+ ++L +N++M +Y + Q EKVP ++ MK + I P +Y I + S
Sbjct: 192 KAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQS 251
Query: 211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK 270
G+ +DL+G+E I+ EM W+T+++ A Y KA L +KA LK EE++
Sbjct: 252 CGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPN 311
Query: 271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL 330
+ ++FL+SLYA + EV R+W+ K A N Y+ ML+A+ KLG+ + +K+
Sbjct: 312 NRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIF 371
Query: 331 KEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA 390
EWE +YD R+ N I Y + + AE IL+ ++K K + ++ +
Sbjct: 372 TEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLEN 431
Query: 391 GKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
K + + ++AA+S E K W ++++ V E F L P+
Sbjct: 432 DKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPL 491
Query: 450 NRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL--VC 492
+ + IK K ++ + + I+ EE +++L VC
Sbjct: 492 DSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKTVC 536
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 236/457 (51%), Gaps = 6/457 (1%)
Query: 28 NKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDW 87
N+ +L I+ G P + L + +G+ V + EL+ I + L + R+ AL++ +W
Sbjct: 37 NRNSLKEILRKNG-PRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEW 95
Query: 88 MNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQT----YGALLNCYVR 143
M + F+ D A++LDLI + HG E YF L + + Y LL YV+
Sbjct: 96 MENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVK 155
Query: 144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFS 203
+ +A + K+ +G ++ +N++M LY +GQYEKV V++ MK I + S
Sbjct: 156 NKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLS 215
Query: 204 YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263
Y + +N+ S + +E + +EM + + WS+ + A+ YIK+ +KA VL+ A
Sbjct: 216 YNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDA 275
Query: 264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH 323
E+ L + + +GY FLI+LYASLGNK V+RLW++ K+ C R +YI +L +L+K G+
Sbjct: 276 EKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDL 335
Query: 324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVV 383
EEAE+V EWE +YD R+ N ++ Y NG ++ AE++ ++E+G +W ++
Sbjct: 336 EEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEIL 395
Query: 384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL 443
G+ E+ M V + W+P ++ +I E +++ A+V L
Sbjct: 396 MEGWVKCENMEKAIDAMHQVF-VLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDL 454
Query: 444 RTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGI 480
+ + +Y ++ + + ++ + MK D +
Sbjct: 455 HRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 177/324 (54%), Gaps = 2/324 (0%)
Query: 44 TRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAV 103
+I P L+ W + GN+V ++ II+ LR + QAL+VS+WM+++ IC P D A
Sbjct: 50 AQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAA 109
Query: 104 QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT-DKALSHFRKMKEMGI 162
+L LI V G AE +F ++ + + Y +LLN Y R +T KA + F+KM+++G+
Sbjct: 110 RLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGL 169
Query: 163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI 222
L + YN +M LYS EKV ++L EMK ++ DN + + Y A D+ ME
Sbjct: 170 LLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEK 229
Query: 223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD-GIGYNFLISL 281
L + E I L+W T A Y++A KA +L+ E+ ++QK Y+ L+ L
Sbjct: 230 FLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKL 289
Query: 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD 341
Y GN+ EVLR+W L K+ N Y T++ +L+K+ + AE++ K WE +D
Sbjct: 290 YGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFD 349
Query: 342 TRIPNAVIIGYCNNGLVQNAEAIL 365
RIP + GY + G+ + AE ++
Sbjct: 350 HRIPTMLASGYRDRGMTEKAEKLM 373
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 36/211 (17%)
Query: 46 IEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQL 105
+ P L+ W G++++ +L+ +I++LR K+FS+AL+VS+WM K +C D+A +L
Sbjct: 387 VTPLLEQW---GDQMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARL 443
Query: 106 DLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS 165
L V G AE YF N+ ++ K Y Y ALL+ Y + +DK L +
Sbjct: 444 YLTENVLGLEEAEKYFENIPENMKDYSVYVALLSSYAK---SDKNLGNM----------- 489
Query: 166 TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILR 225
V ++L EM+ N+ PD + + Y A S ++ ME+ +R
Sbjct: 490 -------------------VDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMFMR 530
Query: 226 EMESQPHIVLDWSTYASAAHFYIKANLIDKA 256
++ I L+ T + A Y+KA L K+
Sbjct: 531 RWGTEDGIKLERGTMIAMAKAYVKAGLTKKS 561
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 185 bits (470), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 180/326 (55%), Gaps = 7/326 (2%)
Query: 29 KTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWM 88
K L S I L P L+ W+ GN++ + EL+ I ++LR+ +R+ ALEV++WM
Sbjct: 54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113
Query: 89 NRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTD 148
+ + D+A ++DLI +V G +AE YF L D KT +TY +LL+ Y +QT+
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 173
Query: 149 KALSHFRKMKEM-GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC 207
+A + F+++ E + +TYN++M LY GQ EKVP+V+ +K K + PD F+Y +
Sbjct: 174 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 233
Query: 208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK-KAEER 266
++S A +++ + IL EM W Y YI ++ + A L +AE+
Sbjct: 234 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 293
Query: 267 LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA 326
+ Q++ I Y+FL+ L+ LGNK + ++W + + +R YI +L + + LG EA
Sbjct: 294 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 353
Query: 327 EKVLKEWELSGNS-YDT----RIPNA 347
E+++ +W+ S + +D RI NA
Sbjct: 354 EEIIHQWKESKTTEFDASACLRILNA 379
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 211/444 (47%), Gaps = 18/444 (4%)
Query: 42 PGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDH 101
PG I LD WV+ GN++ E+ + + LR+R+ + +AL++S+W+ D+
Sbjct: 140 PGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDY 199
Query: 102 AVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMG 161
A +LDL ++ G E+ + K Y LL V K+ F KMK++G
Sbjct: 200 ASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLG 259
Query: 162 IALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME 221
LS T + ++ L+ + + +K+ DVL M+ +NI P +Y+I I+ GA +D+ GME
Sbjct: 260 FPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGME 318
Query: 222 IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL 281
IL M+ + + LD+ T A A Y A L DKA VLK+ E + + + L+S+
Sbjct: 319 QILETMKDEG-VELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSI 377
Query: 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD 341
YASLG + EV R+W + K Y + + ++A KL + +EAE + ++
Sbjct: 378 YASLGREDEVKRIWKI--CESKPYFE-ESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRAS 434
Query: 342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMK 401
+ + ++ Y ++ ++ + +++ + E G +W + Y +AG+ E+ +
Sbjct: 435 SSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLD 494
Query: 402 AALSVYVEGKGWKPDPKVITSILSKLGDE----GSVQDVEAFVAALRTVIPMNR-QMYHA 456
A + K++ + + DE G V + E +R +R + + A
Sbjct: 495 KA--------SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQA 546
Query: 457 FIKANIRNGKGVDELLDSMKADGI 480
++A I + D +KAD I
Sbjct: 547 LMQAYINAKSPAYGMRDRLKADNI 570
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 123/448 (27%), Positives = 219/448 (48%), Gaps = 28/448 (6%)
Query: 43 GTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHA 102
G + LD WV+ G E + + LRKR+ F +AL++++W++ D+A
Sbjct: 139 GLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYA 198
Query: 103 VQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGI 162
+LDLI +V G+ E+Y + + + Y LL +V A + F KMK++G
Sbjct: 199 CRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGF 258
Query: 163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI 222
LST T N ++ LY + + +K+ DVL ++ +N+ P+ +Y+I I++ G+ +D+ GME
Sbjct: 259 PLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQ 317
Query: 223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAE-ERLEQKDGIGYNFLISL 281
I+ M+S+ + LD A A Y A L +KA VLK+ E E LE+ + + L+S+
Sbjct: 318 IVETMKSEG-VELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKD-LLSV 375
Query: 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA-------EKVLK-EW 333
Y L + EV R+W + C+ N Y +L A++ G+ ++ EKVLK
Sbjct: 376 YGYLQREDEVRRVWKI----CEE--NPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSH 429
Query: 334 ELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT 393
+S N Y + ++ Y ++ +V + +++ + + G +W V Y +AG+
Sbjct: 430 RVSSNVY-----SVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEV 484
Query: 394 ERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR-Q 452
E+ +++LS ++ K KP ++ + G V + E ++ +R
Sbjct: 485 EKA----ESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFW 540
Query: 453 MYHAFIKANIRNGKGVDELLDSMKADGI 480
Y I+A + + + MKAD I
Sbjct: 541 AYQTLIQAYVNAKAPAYGMKERMKADNI 568
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 201/439 (45%), Gaps = 24/439 (5%)
Query: 50 LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG 109
L+ WVK G + E+ I +LRKRK ++ L++ +W+ F ++A QLDL+
Sbjct: 161 LEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQLDLVA 220
Query: 110 RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY 169
+VH AE + ++ + + Y LL V + +KA F KMKE+ S
Sbjct: 221 KVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTSVFAC 280
Query: 170 NDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES 229
N ++ LYS + +K+ DVL M+ +NI P +Y INS G D+ GME I+ ++
Sbjct: 281 NQLLLLYSMHDR-KKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKE 339
Query: 230 QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS 289
+ I LD + A +YI+A L ++A D++K+ E + Q+ L+ LYA +G+
Sbjct: 340 E-GIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIGDSD 398
Query: 290 EVLRLWDLEKTACKRYINR-----DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRI 344
V RL R++++ + I+ ++A KL E EEAE V + +
Sbjct: 399 NVRRL--------SRFVDQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMP 450
Query: 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404
A++ Y N ++ +++ + G A P++W + Y AG + KA L
Sbjct: 451 YFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAG------EVGKAEL 504
Query: 405 SVYVEGKGWKPDPKVIT--SILSKLGDEGSVQDVE-AFVAALRTVIPMNRQMYHAFIKAN 461
+ K K P T +IL + G V + E F+ R Y + A
Sbjct: 505 ILNRATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAY 564
Query: 462 IRNGKGVDELLDSMKADGI 480
I +++ MKAD +
Sbjct: 565 INAKTPAYGMIERMKADNV 583
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 102/457 (22%), Positives = 198/457 (43%), Gaps = 17/457 (3%)
Query: 43 GTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHA 102
G + L +W+ +G V G++ I LRK R +ALE+ +W+ R+ +++
Sbjct: 78 GVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYS 137
Query: 103 VQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGI 162
L+ ++HG E F+ + + + Y L+ + Q AL + +KM+E+G
Sbjct: 138 YLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGY 197
Query: 163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI 222
S L YN ++ S G+ + + L MKA P +Y I + +++G+
Sbjct: 198 RTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLK 257
Query: 223 ILREMES---QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLI 279
M+ +P+ V +Y A + A L A ++ E+ + + + L+
Sbjct: 258 AFDGMKKAGVEPNEV----SYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDILM 313
Query: 280 SLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS 339
LY LG + E+ R W++ + ++ Y+ EA ++G + AE++ E +
Sbjct: 314 ILYGRLGKEKELARTWNVIR-GFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGL 372
Query: 340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNS--WAVVAAGYFDAGKTERGF 397
+T N+++ YC +GL++ A + ++ G PNS + +A G A +
Sbjct: 373 KETEQFNSLLSVYCKDGLIEKAIGVFREMT--GNGFKPNSITYRHLALGCAKAKLMKEAL 430
Query: 398 QCMKAALSVYVEGKGWKPDPKVIT--SILSKLGDEGSVQDVEAFVAALRTVIPMNRQ--M 453
+ ++ L++ P + T SI+ ++G V++ E ++ NR +
Sbjct: 431 KNIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNA-KYNRYAFV 489
Query: 454 YHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
Y+A KA ++ L M G D E+ +L
Sbjct: 490 YNALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLL 526
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 169/405 (41%), Gaps = 27/405 (6%)
Query: 92 GICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDK 149
G+CV D A+ L F +KDDE T +TY L+ + +
Sbjct: 297 GLCVARRIDEAMDL---------------FVKMKDDECFPTVRTYTVLIKSLCGSERKSE 341
Query: 150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209
AL+ ++M+E GI + TY ++ ++EK ++L +M K + P+ +Y IN
Sbjct: 342 ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401
Query: 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269
Y R +E ++ MES+ + + TY Y K+N + KA VL K ER
Sbjct: 402 GYCKRGMIEDAVDVVELMESR-KLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVL 459
Query: 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
D + YN LI GN RL L Y +M+++L K EEA +
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
E G + + + A+I GYC G V A +LE ++ K ++ + G
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579
Query: 390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEA-FVAALRTVIP 448
GK + + + + G +P T ++ +L +G + F L +
Sbjct: 580 DGKLKEATLLEEKMVKI-----GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK 634
Query: 449 MNRQMYHAFIKANIRNGKGVD--ELLDSMKADGIDEDEETKEILV 491
+ Y FI+ R G+ +D +++ M+ +G+ D T L+
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 131/300 (43%), Gaps = 15/300 (5%)
Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191
+TY L+ Y + KA+ KM E + +TYN ++ ++G ++ +L+
Sbjct: 429 RTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487
Query: 192 MKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQ---PHIVLDWSTYASAAHFYI 248
M + + PD ++Y I+S +E + +E + P++V+ Y + Y
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVM----YTALIDGYC 543
Query: 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD-LEKTACKRYIN 307
KA +D+A +L+K + + + +N LI + G E L + + K + ++
Sbjct: 544 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 603
Query: 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
D I ++ L+K G+ + A ++ SG D I YC G + +AE ++
Sbjct: 604 TDTI-LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAK 662
Query: 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427
+ E G + +++ + GY D G+T F +K + G +P S++ L
Sbjct: 663 MRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKR-----MRDTGCEPSQHTFLSLIKHL 717
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 3/255 (1%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
Y LLN R D+ + +M E + + TYN ++ Y K G E+ ++++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 194 AKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI 253
+ PD F+Y I Y R DL+ + EM + + Y H A I
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK-GCRRNEVAYTHLIHGLCVARRI 304
Query: 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW-DLEKTACKRYINRDYIT 312
D+A D+ K ++ Y LI KSE L L ++E+T K I+ Y
Sbjct: 305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHT-YTV 363
Query: 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
++++L + E+A ++L + G + NA+I GYC G++++A ++E + +
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 373 KATTPNSWAVVAAGY 387
+ ++ + GY
Sbjct: 424 LSPNTRTYNELIKGY 438
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 109/289 (37%), Gaps = 18/289 (6%)
Query: 128 EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187
+ T T L++ ++ D A S F++M G TY + Y + G+ D
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658
Query: 188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM-----ESQPHIVLDWSTY-- 240
++ +M+ + PD F+Y I YG +L+ M E H L +
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLL 718
Query: 241 --------ASAAHFYIKANLI--DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290
S +N++ D ++L+K E + Y LI +GN
Sbjct: 719 EMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRV 778
Query: 291 VLRLWD-LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349
+++D +++ + +L KL +H EA KV+ + G+ +I
Sbjct: 779 AEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLI 838
Query: 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQ 398
G G + ++ ++L++ G +W ++ G G E ++
Sbjct: 839 CGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYE 887
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 139/345 (40%), Gaps = 21/345 (6%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY ++N Y + ++A + K+ E G+ TY ++ Y + + V EM
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279
Query: 193 KAKNIFPDNFSYRICINSYG-ARSDLEGMEII--LREMESQPHIVLDWSTYASAAHFYIK 249
K + +Y I+ AR E M++ +++ E P + TY
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTV----RTYTVLIKSLCG 335
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN--KSEVLRLWDLEKTACKRYIN 307
+ +A +++K+ EE + + Y LI S K+ L LEK I
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395
Query: 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
Y ++ K G E+A V++ E S +TR N +I GYC + V A +L
Sbjct: 396 --YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNK 452
Query: 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427
++E+ ++ + G +G + ++ L + +G PD TS++ L
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYR-----LLSLMNDRGLVPDQWTYTSMIDSL 507
Query: 428 GDEGSVQDVEAFVAAL--RTVIPMNRQMYHAFIKANIRNGKGVDE 470
V++ +L + V P N MY A I + GK VDE
Sbjct: 508 CKSKRVEEACDLFDSLEQKGVNP-NVVMYTALIDGYCKAGK-VDE 550
>sp|Q9C545|PPR72_ARATH Putative pentatricopeptide repeat-containing protein At1g43010
OS=Arabidopsis thaliana GN=At1g43010 PE=3 SV=1
Length = 257
Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 8/243 (3%)
Query: 15 NAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRK 74
N +F R Y T TL S I N I P L+ W K G +V L+ +I++L
Sbjct: 21 NCLFRRSYETLPAANQTLPSRIKTDINQKASIIPLLEQWRKQGYEVNPSHLRGLIKNLSD 80
Query: 75 RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY 134
K F+ ALE S WM + + P D A QL L+ V G AE F N+ + + Y
Sbjct: 81 CKNFTTALEASKWMFKHSVFDNFPEDCAAQLHLVNTVLGLEEAEKMFKNIPEK---MRDY 137
Query: 135 GALLNCYVRQ-RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
LL+ Y + R DKA + F+KM+E+G L +N ++CLY + + + V +L ++K
Sbjct: 138 SVLLSSYTKPVRTVDKAEATFKKMRELGFLLKPYLFNSMICLYGQLQRLDMVEKLLYKLK 197
Query: 194 AKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI 253
N+ + Y + +E + + S+ I L+ T + A Y +A I
Sbjct: 198 KNNMEVGSLKVNNVSRVYANINAMEKFKTWV----SKEGIELERDTIVAMAKAYHRAGSI 253
Query: 254 DKA 256
+KA
Sbjct: 254 EKA 256
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 167/363 (46%), Gaps = 23/363 (6%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
Y +++ + + D AL+ F++M+ GI + +TY+ ++ G++ +L++M
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 194 AKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQ---PHIVLDWSTYASAAHFYIKA 250
+ I PD F++ I+++ L E + EM + P IV TY+S + +
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV----TYSSLINGFCMH 374
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY 310
+ +D+A + + + D + YN LI + E + ++ + +R + +
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF---REMSQRGLVGNT 431
Query: 311 IT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
+T +++ L + G+ + A+++ KE G + N ++ G C NG ++ A + E
Sbjct: 432 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491
Query: 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427
L T ++ ++ G AGK E G+ L + KG KPD +++S
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD-----LFCNLSLKGVKPDVVAYNTMISGF 546
Query: 428 GDEGSVQDVEAFVAALRT--VIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDED 483
+GS ++ +A ++ +P N Y+ I+A +R+G + EL+ M++ G D
Sbjct: 547 CRKGSKEEADALFKEMKEDGTLP-NSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605
Query: 484 EET 486
T
Sbjct: 606 AST 608
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 178/426 (41%), Gaps = 50/426 (11%)
Query: 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAV------------QLDLIGRV 111
E +++ + K +F + + + M GI P +H QL L V
Sbjct: 83 EFSKLLSAIAKMNKFDVVISLGEQMQNLGI----PHNHYTYSILINCFCRRSQLPLALAV 138
Query: 112 HGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYND 171
G + Y E T +LLN Y ++ +A++ +M G +T+T+N
Sbjct: 139 LGKMMKLGY-------EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNT 191
Query: 172 I---MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME 228
+ + L++K + + D M AK PD +Y + +N R D + +L +ME
Sbjct: 192 LIHGLFLHNKASEAMALID---RMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME 248
Query: 229 S---QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASL 285
+P +++ Y + K +D A ++ K+ E + + + + Y+ LIS +
Sbjct: 249 QGKLEPGVLI----YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNY 304
Query: 286 GNKSEVLRLWDLEKTACKRYINRDYIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDT 342
G S+ RL +R IN D T +++A +K G+ EAEK+ E+ S D
Sbjct: 305 GRWSDASRLL---SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD--EMVKRSIDP 359
Query: 343 RIP--NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCM 400
I +++I G+C + + A+ + E +V K ++ + G+ + E G +
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419
Query: 401 KAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA 460
+ + G + ++ L + GD Q++ F + +P N Y+ +
Sbjct: 420 REMSQRGLVGNTVTYN--ILIQGLFQAGDCDMAQEI--FKEMVSDGVPPNIMTYNTLLDG 475
Query: 461 NIRNGK 466
+NGK
Sbjct: 476 LCKNGK 481
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 7/249 (2%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
T+ AL++ +V++ + +A + +M + I S +TY+ ++ + + ++ + M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387
Query: 193 KAKNIFPDNFSYRICINSYGARSDL-EGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251
+K+ FPD +Y I + + EGME + REM SQ +V + TY +A
Sbjct: 388 VSKHCFPDVVTYNTLIKGFCKYKRVEEGME-VFREM-SQRGLVGNTVTYNILIQGLFQAG 445
Query: 252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD-LEKTACKRYINRDY 310
D A ++ K+ + + YN L+ G + + +++ L+++ + I Y
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI-YTY 504
Query: 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE 370
M+E + K G+ E+ + L G D N +I G+C G + A+A+ +++ E
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 564
Query: 371 KGKATTPNS 379
G T PNS
Sbjct: 565 DG--TLPNS 571
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 51/356 (14%)
Query: 26 RINKTTLYSIISPLGNPGT--------------RIEPE-------LDNWVKNGNKVRVGE 64
R N T S+IS L N G +I P+ +D +VK G V E
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLV---E 344
Query: 65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNL 124
+++ ++ KR + S +N G C+ D A Q+ F+ ++ F ++
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLIN--GFCMHDRLDEAKQM------FEFMVSKHCFPDV 396
Query: 125 KDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEK 184
TY L+ + + ++ ++ + FR+M + G+ +T+TYN ++ + G +
Sbjct: 397 -------VTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449
Query: 185 VPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEII---LREMESQPHIVLDWSTYA 241
++ EM + + P+ +Y ++ LE ++ L+ + +P I TY
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY----TYN 505
Query: 242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTA 301
KA ++ D+ + + D + YN +IS + G+K E L+ K
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565
Query: 302 CKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL 357
+ Y T++ A ++ G+ E + +++KE G + D A IG N L
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD-----ASTIGLVTNML 616
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/367 (24%), Positives = 158/367 (43%), Gaps = 9/367 (2%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY L+ + D AL+ F KM+ G + +TYN ++ Y K + + +L M
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
K + P+ SY + IN ++ + +L EM + + LD TY + Y K
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGY-SLDEVTYNTLIKGYCKEGN 325
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT 312
+A + + I Y LI GN + + D + R Y T
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
+++ + G EA +VL+E +G S NA+I G+C G +++A A+LED+ EKG
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 373 KATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS 432
+ S++ V +G+ + + + + + KG KPD +S++ ++
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE-----KGIKPDTITYSSLIQGFCEQRR 500
Query: 433 VQDV-EAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEI 489
++ + + LR +P + Y A I A G + +L + M G+ D T +
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560
Query: 490 LVCTMEK 496
L+ + K
Sbjct: 561 LINGLNK 567
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/448 (21%), Positives = 183/448 (40%), Gaps = 62/448 (13%)
Query: 53 WVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH 112
+++G V +I + K ++A+E D M +G+C
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC------------------ 377
Query: 113 GFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI 172
+E+TY T L++ + ++ ++A R+M + G + S +TYN +
Sbjct: 378 -------------PNERTYTT---LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPH 232
+ + TG+ E VL +MK K + PD SY ++ + D++ + REM +
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM-VEKG 480
Query: 233 IVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL 292
I D TY+S + + +A D+ ++ D Y LI+ Y G+ + L
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKAL 540
Query: 293 RLWD--LEKTACKRYINRDYITMLEALMKLGEHEEAEKVL-----KEWELSGNSYDTRIP 345
+L + +EK + Y ++ L K EA+++L +E S +Y T I
Sbjct: 541 QLHNEMVEKGVLPDVVT--YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Query: 346 N----------AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395
N ++I G+C G++ A+ + E ++ K ++ ++ G+ AG +
Sbjct: 599 NCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRK 658
Query: 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEA-FVAALRTVIPMNRQMY 454
+ K + G+ + +++ L EG V ++ + V LR+ +
Sbjct: 659 AYTLYKEMVK-----SGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQA 713
Query: 455 HAFIKANIRNGKG--VDELLDSMKADGI 480
++ N R G V ++L M DG
Sbjct: 714 KVLVEINHREGNMDVVLDVLAEMAKDGF 741
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 118/267 (44%), Gaps = 13/267 (4%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY L+ Y ++ +AL +M G+ S +TY ++ K G + + L +M
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM 371
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES---QPHIVLDWSTYASAAHFYIK 249
+ + + P+ +Y ++ + + + +LREM P +V TY + + +
Sbjct: 372 RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV----TYNALINGHCV 427
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309
++ A VL+ +E+ D + Y+ ++S + + E LR+ ++ ++ I D
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV---KREMVEKGIKPD 484
Query: 310 YIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILE 366
IT +++ + +EA + +E G D A+I YC G ++ A +
Sbjct: 485 TITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHN 544
Query: 367 DLVEKGKATTPNSWAVVAAGYFDAGKT 393
++VEKG +++V+ G +T
Sbjct: 545 EMVEKGVLPDVVTYSVLINGLNKQSRT 571
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 157/352 (44%), Gaps = 9/352 (2%)
Query: 143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNF 202
++R+ D L FR+M + G+ ++ + ++ + G+ EK ++ E K I P+ +
Sbjct: 201 KRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAY 260
Query: 203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK 262
+Y IN+Y + D G+E +L+ M+ + +V + TY +K + A + +
Sbjct: 261 TYNTIINAYVKQRDFSGVEGVLKVMK-KDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDE 319
Query: 263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE 322
ER + D Y LIS GN L+D + Y +++ + K+GE
Sbjct: 320 MRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGE 379
Query: 323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV 382
AE ++ E + G + + N +I GYC G+V A I + + +KG +
Sbjct: 380 MGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNT 439
Query: 383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVE-AFVA 441
+A+ + + + K L +EG G K T+++ EG+V++ + FV
Sbjct: 440 IASCFNRLKRYDEA----KQWLFRMMEG-GVKLSTVSYTNLIDVYCKEGNVEEAKRLFVE 494
Query: 442 ALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV 491
+ N Y+ I A + G K +L +M+A+G+D D T L+
Sbjct: 495 MSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLI 546
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 93/195 (47%), Gaps = 5/195 (2%)
Query: 127 DEKTYQ----TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY 182
++K +Q T + +C+ R ++ D+A +M E G+ LST++Y +++ +Y K G
Sbjct: 426 EQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNV 485
Query: 183 EKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYAS 242
E+ + EM +K + P+ +Y + I +Y + ++ + ME+ + D TY S
Sbjct: 486 EEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEAN-GMDPDSYTYTS 544
Query: 243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC 302
H A+ +D+A + + + ++ + Y +IS + G E L+D K
Sbjct: 545 LIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKG 604
Query: 303 KRYINRDYITMLEAL 317
N+ Y ++ ++
Sbjct: 605 YTIDNKVYTALIGSM 619
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 138/365 (37%), Gaps = 76/365 (20%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY ++N YV+QR + MK+ G+ + +TY +M L K G+ + EM
Sbjct: 261 TYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEM 320
Query: 193 KAKNIFPDNFSYRICIN----------------------------SYGARSD-------L 217
+ + I D Y I+ +YGA D +
Sbjct: 321 RERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEM 380
Query: 218 EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD------ 271
EI++ EM+S+ + + + + Y + ++D+AS + E++ Q D
Sbjct: 381 GAAEILMNEMQSK-GVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNT 439
Query: 272 -----------------------------GIGYNFLISLYASLGNKSEVLRLWDLEKTAC 302
+ Y LI +Y GN E RL+ +
Sbjct: 440 IASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKG 499
Query: 303 KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAE 362
+ Y M+ A K G+ +EA K+ E +G D+ ++I G C V A
Sbjct: 500 VQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAM 559
Query: 363 AILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422
+ ++ KG ++ V+ +G AGK++ F L ++ KG+ D KV T+
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF-----GLYDEMKRKGYTIDNKVYTA 614
Query: 423 ILSKL 427
++ +
Sbjct: 615 LIGSM 619
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/449 (23%), Positives = 195/449 (43%), Gaps = 39/449 (8%)
Query: 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSN 123
+L +++ L + +A+ + +W+ DH V +++ R+ G S S +
Sbjct: 138 DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQV-IEIFVRILGRESQYSVAAK 196
Query: 124 LKD---------DEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC 174
L D D + Y T +L+ Y R + +KA+ F +MKEMG + + +TYN I+
Sbjct: 197 LLDKIPLQEYLLDVRAYTT---ILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILD 253
Query: 175 LYSKTGQ-YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES---Q 230
++ K G+ + K+ VL EM++K + D F+ +++ L + E++S +
Sbjct: 254 VFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYE 313
Query: 231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290
P V TY + + KA + +A VLK+ EE D + YN L++ Y G E
Sbjct: 314 PGTV----TYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKE 369
Query: 291 VLRLWDL--EKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAV 348
+ ++ +K I Y T+++A K G+ +EA K+ + +G +T NAV
Sbjct: 370 AAGVIEMMTKKGVMPNAIT--YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAV 427
Query: 349 IIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK---TERGFQCMKAALS 405
+ +L D+ G + +W + A + G R F+ MK+
Sbjct: 428 LSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSC-- 485
Query: 406 VYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL-RTVIPMNRQMYHAFIKANIRN 464
G++PD +++S G GS D + R Y+A + A R
Sbjct: 486 ------GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARK 539
Query: 465 G--KGVDELLDSMKADGIDEDEETKEILV 491
G + + ++ MK+ G E + +++
Sbjct: 540 GDWRSGENVISDMKSKGFKPTETSYSLML 568
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/445 (20%), Positives = 183/445 (41%), Gaps = 41/445 (9%)
Query: 76 KRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD--EKTYQT 133
+ + + L V D M KG+ F + L R A+ +F+ LK E T
Sbjct: 260 RSWRKILGVLDEMRSKGL-KFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVT 318
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
Y ALL + + +ALS ++M+E ++TYN+++ Y + G ++ V+ M
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMT 378
Query: 194 AKNIFPDNFSYRICINSYG-ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
K + P+ +Y I++YG A + E +++ E+ V + TY + K +
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA--GCVPNTCTYNAVLSLLGKKSR 436
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD-YI 311
++ +L + + +N +++L + G V R++ E +C +RD +
Sbjct: 437 SNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFR-EMKSCGFEPDRDTFN 495
Query: 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK 371
T++ A + G +A K+ E +G + NA++ G ++ E ++ D+ K
Sbjct: 496 TLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSK 555
Query: 372 GKATTPNSWAVVAAGYFDAGK---TER-----------------------GFQCMKAALS 405
G T S++++ Y G ER F+C A S
Sbjct: 556 GFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGS 615
Query: 406 ----VYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQMYHAFIKA 460
+ G+KPD + S+LS E + ++R + + Y++ +
Sbjct: 616 ERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDM 675
Query: 461 NIRNGK--GVDELLDSMKADGIDED 483
+R G+ +E+L +++ + D
Sbjct: 676 YVRRGECWKAEEILKTLEKSQLKPD 700
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 126/323 (39%), Gaps = 55/323 (17%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY ALLN R+ + MK G + +Y+ ++ Y+K G Y + + +
Sbjct: 528 TYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRI 587
Query: 193 KAKNIFPDNFSYR-ICINSYGARSDLEGME---IILREMESQPHIVLDWSTYASAAHFYI 248
K IFP R + + ++ R+ L G E + ++ +P +V+ + S +
Sbjct: 588 KEGQIFPSWMLLRTLLLANFKCRA-LAGSERAFTLFKKHGYKPDMVI----FNSMLSIFT 642
Query: 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR 308
+ N+ D+A +L+ E D + YN L+ +Y
Sbjct: 643 RNNMYDQAEGILESIREDGLSPDLVTYNSLMDMY-------------------------- 676
Query: 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL 368
++ GE +AE++LK E S D N VI G+C GL+Q A +L ++
Sbjct: 677 ---------VRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM 727
Query: 369 VEKGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALSVYVEGKGWKPDPKVITSILS 425
E+G ++ +GY G + E +CM +P+ ++
Sbjct: 728 TERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAK--------NDCRPNELTFKMVVD 779
Query: 426 KLGDEGSVQDVEAFVAALRTVIP 448
G + FV+ ++T P
Sbjct: 780 GYCRAGKYSEAMDFVSKIKTFDP 802
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 104/474 (21%), Positives = 195/474 (41%), Gaps = 45/474 (9%)
Query: 58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDH--AVQLDLIGRVHGFL 115
NK+ + + + ++ R + ++L + +M R+ C P +H + + L+GR
Sbjct: 101 NKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWC--KPNEHIYTIMISLLGREGLLD 158
Query: 116 SAESYFSNLKDD--EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM 173
F + ++ +Y AL+N Y R + + +L +MK I+ S LTYN ++
Sbjct: 159 KCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVI 218
Query: 174 CLYSKTG-QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPH 232
++ G +E + + EM+ + I PD +Y +++ R + E++ R M +
Sbjct: 219 NACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTM-NDGG 277
Query: 233 IVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL 292
IV D +TY+ + K ++K D+L + D YN L+ YA G+ E +
Sbjct: 278 IVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAM 337
Query: 293 RLW-DLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351
++ ++ C N Y +L + G +++ ++ E + S D N +I
Sbjct: 338 GVFHQMQAAGCTPNAN-TYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEV 396
Query: 352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERG---FQCMKA------ 402
+ G + + D+VE+ ++ + G E Q M A
Sbjct: 397 FGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPS 456
Query: 403 ------------ALSVYVEG---------KGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441
++Y E G P + S+L G V++ EA ++
Sbjct: 457 SKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILS 516
Query: 442 AL-RTVIPMNRQMYHAFIKANIRNGK---GVDELLDSMKADGIDEDEETKEILV 491
L + IP NR ++A I+A + GK V +D M+ D DE T E ++
Sbjct: 517 RLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVD-MEKSRCDPDERTLEAVL 569
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 173/442 (39%), Gaps = 62/442 (14%)
Query: 32 LYSI-ISPLGNPGT--RIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWM 88
+Y+I IS LG G + D G V +I + R+ +LE+ D M
Sbjct: 143 IYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRM 202
Query: 89 NRKGI--------CVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNC 140
+ I V C LD G + F AE ++ D TY T L C
Sbjct: 203 KNEKISPSILTYNTVINACARG-GLDWEGLLGLF--AEMRHEGIQPDIVTYNTL--LSAC 257
Query: 141 YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD 200
+R D+A FR M + GI TY+ ++ + K + EKV D+L EM + PD
Sbjct: 258 AIRG-LGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPD 316
Query: 201 NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVL 260
SY + + +Y ++ + +M++ + +TY+ + + ++ D +
Sbjct: 317 ITSYNVLLEAYAKSGSIKEAMGVFHQMQA-AGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375
Query: 261 KKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW----------DLEK-----TACKR- 304
+ + D YN LI ++ G EV+ L+ D+E AC +
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435
Query: 305 -----------YI--------NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP 345
Y+ ++ Y ++EA + +EEA G++
Sbjct: 436 GLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETF 495
Query: 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405
++++ + GLV+ +EAIL LV+ G +++ Y GK E A+
Sbjct: 496 HSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEE-------AVK 548
Query: 406 VYV--EGKGWKPDPKVITSILS 425
YV E PD + + ++LS
Sbjct: 549 TYVDMEKSRCDPDERTLEAVLS 570
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 118/301 (39%), Gaps = 45/301 (14%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
+Y LL Y + +A+ F +M+ G + TY+ ++ L+ ++G+Y+ V + EM
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTY------------ 240
K+ N PD +Y I I +G + + + +M + +I D TY
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM-VEENIEPDMETYEGIIFACGKGGL 437
Query: 241 ---ASAAHFYIKANLIDKASDVLKKAEERLEQK-------------DGIGYNFLISLYAS 284
A Y+ AN I +S E Q +G N I + S
Sbjct: 438 HEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHS 497
Query: 285 L---------GNKSEVLRLWDLEKTACKRYINRD-YITMLEALMKLGEHEEAEKVLKEWE 334
L +SE + L L + R NRD + +EA + G+ EEA K + E
Sbjct: 498 LLYSFARGGLVKESEAI-LSRLVDSGIPR--NRDTFNAQIEAYKQGGKFEEAVKTYVDME 554
Query: 335 LSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394
S D R AV+ Y LV E++ + + ++ A Y GKTE
Sbjct: 555 KSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVY---GKTE 611
Query: 395 R 395
R
Sbjct: 612 R 612
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 122 SNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ 181
S DE+T + A+L+ Y R D+ F +MK I S + Y ++ +Y KT +
Sbjct: 556 SRCDPDERTLE---AVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTER 612
Query: 182 YEKVPDVLTEMKAKNI 197
++ V ++L EM + +
Sbjct: 613 WDDVNELLEEMLSNRV 628
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 163/367 (44%), Gaps = 28/367 (7%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TYGA++N ++ + D AL+ KM++ I + YN I+ K + D+ +M
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKM 276
Query: 193 KAKNIFPDNFSYR---ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249
+ K I PD F+Y C+ +YG SD + + E P +V + + ++K
Sbjct: 277 ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVF----FNALIDAFVK 332
Query: 250 ANLIDKASDVLKKAEERLEQK----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY 305
+ +A K +E ++ K D + YN LI + E + ++ + +R
Sbjct: 333 EGKLVEAE---KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVF---REMSQRG 386
Query: 306 I---NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAE 362
+ Y T++ + + + A+ V K+ G D N ++ G CNNG V+ A
Sbjct: 387 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETAL 446
Query: 363 AILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422
+ E + ++ ++ + AGK E G+ + +LS+ KG KP+ T+
Sbjct: 447 VVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWD-LFCSLSL----KGVKPNVVTYTT 501
Query: 423 ILSKLGDEGSVQDVEAFVAALRTVIPM-NRQMYHAFIKANIRNG--KGVDELLDSMKADG 479
++S +G ++ +A ++ P+ N Y+ I+A +R+G EL+ M++ G
Sbjct: 502 MMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCG 561
Query: 480 IDEDEET 486
D T
Sbjct: 562 FAGDAST 568
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 151/357 (42%), Gaps = 20/357 (5%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
T +LLN + + +A++ +M EMG T+T+ ++ + + + ++ M
Sbjct: 147 TLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 206
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
K PD +Y IN R + + +L +ME + I D Y + K
Sbjct: 207 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME-KGKIEADVVIYNTIIDGLCKYKH 265
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD--LEKTACKRYINRDY 310
+D A D+ K E + + D YN LIS + G S+ RL LEK IN D
Sbjct: 266 MDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN-----INPDL 320
Query: 311 I---TMLEALMKLGEHEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILE 366
+ +++A +K G+ EAEK+ E S + + D N +I G+C V+ +
Sbjct: 321 VFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFR 380
Query: 367 DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSK 426
++ ++G ++ + G+F A + K +S G PD +L
Sbjct: 381 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS-----DGVHPDIMTYNILLDG 435
Query: 427 LGDEGSVQD-VEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVD--ELLDSMKADGI 480
L + G+V+ + F + + ++ Y I+A + GK D +L S+ G+
Sbjct: 436 LCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGV 492
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 123/305 (40%), Gaps = 46/305 (15%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY L++C + A M E I + +N ++ + K G+ + + EM
Sbjct: 287 TYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM 346
Query: 193 -KAKNIFPDNFSYRICINSYGARSDLE-GMEIILREMESQPHIVLDWSTYASAAHFYIKA 250
K+K+ FPD +Y I + +E GME+ REM SQ +V + TY + H + +A
Sbjct: 347 VKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEV-FREM-SQRGLVGNTVTYTTLIHGFFQA 404
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD- 309
D A V K+ D + YN L+ + GN L +++ + KR + D
Sbjct: 405 RDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQ---KRDMKLDI 461
Query: 310 --YITMLEALMKLGE-----------------------------------HEEAEKVLKE 332
Y TM+EAL K G+ EEA+ + E
Sbjct: 462 VTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVE 521
Query: 333 WELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK 392
+ G ++ N +I +G + +++++ G A +++ +V D G+
Sbjct: 522 MKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHD-GR 580
Query: 393 TERGF 397
++ F
Sbjct: 581 LDKSF 585
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 144/367 (39%), Gaps = 20/367 (5%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
+ LL+ + + D +S +M+ +GI+ + TY+ + + + Q +L +M
Sbjct: 78 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137
Query: 194 AKNIFPDNFSYRICINSY--GAR-SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA 250
P + +N + G R S+ + + EM QP D T+ + H +
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP----DTVTFTTLVHGLFQH 193
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD-LEKTACKRYINRD 309
N +A ++++ + Q D + Y +I+ G L L + +EK + +
Sbjct: 194 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADV-VI 252
Query: 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369
Y T+++ L K ++A + + E G D N +I CN G +A +L D++
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312
Query: 370 EKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429
EK N V DA E + V+ K PD +++
Sbjct: 313 EK----NINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCK 368
Query: 430 EGSVQD-VEAFVAALRTVIPMNRQMY----HAFIKANIRNGKGVDELLDSMKADGIDEDE 484
V++ +E F + + N Y H F +A R+ + M +DG+ D
Sbjct: 369 YKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQA--RDCDNAQMVFKQMVSDGVHPDI 426
Query: 485 ETKEILV 491
T IL+
Sbjct: 427 MTYNILL 433
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 147/337 (43%), Gaps = 19/337 (5%)
Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191
Q LLN V+QR TD F+KM ++G+ + YN ++ SK+G EK +L+E
Sbjct: 169 QACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSE 228
Query: 192 MKAKNIFPDNFSYRICINSYGARS-DLEGMEIILREMES--QPHIVLDWSTYASAAHFYI 248
M+ K +FPD F+Y I+ Y +S E + + R S P+IV TY S H +
Sbjct: 229 MEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIV----TYNSFIHGFS 284
Query: 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR 308
+ + +A+ + ++ ++ + + + Y LI Y + + E LRL ++ ++
Sbjct: 285 REGRMREATRLFREIKDDV-TANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVV 343
Query: 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL 368
Y ++L L + G EA ++L E D N +I YC + +A + + +
Sbjct: 344 TYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKM 403
Query: 369 VEKGKATTPNSWAVVAAGYFDA-----------GKTERGFQCMKAALSVYVEGKGWKPDP 417
+E G S+ + G+ E+GF A S V+G +
Sbjct: 404 IESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQ 463
Query: 418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY 454
IT +L + G DV + +R + + + Y
Sbjct: 464 DEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDY 500
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 143/334 (42%), Gaps = 21/334 (6%)
Query: 74 KRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGF------LSAESYFSNLKDD 127
K+ +AL V D M R G+ AP + V + +HGF A F +KDD
Sbjct: 250 KKSMHFEALSVQDRMERSGV---AP--NIVTYN--SFIHGFSREGRMREATRLFREIKDD 302
Query: 128 -EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVP 186
+ TY L++ Y R D+AL M+ G + +TYN I+ + G+ +
Sbjct: 303 VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREAN 362
Query: 187 DVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHF 246
+LTEM K I PDN + IN+Y D+ + ++M + + LD +Y + H
Sbjct: 363 RLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKM-IESGLKLDMYSYKALIHG 421
Query: 247 YIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI 306
+ K ++ A + L E+ Y++L+ + + + E+ +L LE+ KR +
Sbjct: 422 FCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKL--LEEFE-KRGL 478
Query: 307 NRD---YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEA 363
D Y ++ + KL + + A+ + + E G D+ I + Y G V A A
Sbjct: 479 CADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASA 538
Query: 364 ILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF 397
+ + + + + ++A Y R F
Sbjct: 539 LFDVMYNRRLMVNLKLYKSISASYAGDNDVLRFF 572
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 143/349 (40%), Gaps = 45/349 (12%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY +L+N Y + R M E G++ + +TY ++ Y K G E+ V +
Sbjct: 263 TYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELL 322
Query: 193 KAKNIFPDNFSYRICINSY--------GARSDLEGMEIILR------------------- 225
K K + D Y + ++ Y R +EI +R
Sbjct: 323 KEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQL 382
Query: 226 -EMESQPHIVLDWS------TYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL 278
E E + DWS TY + Y +A +D+A + + ++ + YN L
Sbjct: 383 VEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNIL 442
Query: 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYI---TMLEALMKLGEHEEAEKVLKEWEL 335
+ Y+ +G +VL LW K KR +N D I T+LEAL KLG+ EA K+ +
Sbjct: 443 LKGYSRIGAFHDVLSLW---KMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLA 499
Query: 336 SGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395
G DT N +I G C V A+ IL+++ ++ ++ GY+ G +
Sbjct: 500 RGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKE 559
Query: 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALR 444
F A+ Y+E KG P ++ +++S + V V LR
Sbjct: 560 AF-----AVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELR 603
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 92/211 (43%)
Query: 188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFY 247
V +M + + PD F+ I +N+Y +++ + +E ES + L+ TY S + Y
Sbjct: 212 VYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGY 271
Query: 248 IKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN 307
++ + VL+ ER ++ + Y LI Y G E +++L K
Sbjct: 272 AMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQ 331
Query: 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
Y +++ + G+ +A +V G +T I N++I GYC +G + AE I
Sbjct: 332 HMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSR 391
Query: 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQ 398
+ + +++ + GY AG + +
Sbjct: 392 MNDWSLKPDHHTYNTLVDGYCRAGYVDEALK 422
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/393 (21%), Positives = 151/393 (38%), Gaps = 27/393 (6%)
Query: 114 FLSAESYFSNLKD--DEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYND 171
+ AE FS + D + + TY L++ Y R D+AL +M + + + +TYN
Sbjct: 382 LVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNI 441
Query: 172 IMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL-EGMEIILREMESQ 230
++ YS+ G + V + M + + D S + + D E M+ L E
Sbjct: 442 LLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMK--LWENVLA 499
Query: 231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290
++ D T K +++A ++L + Y L Y +GN E
Sbjct: 500 RGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKE 559
Query: 291 VLRLWDLEKTACKRYINRD--------YITMLEALMKLGEHEEAEKVLKEWELSGNSYDT 342
A K Y+ R Y T++ K + ++ E G +
Sbjct: 560 AF--------AVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTV 611
Query: 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKA 402
A+I G+CN G++ A A +++EKG N + +A F K + ++
Sbjct: 612 ATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQK 671
Query: 403 ALSVYVEGKGWKPDPKVI-TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKAN 461
+ + G++ + + S + L + + VE + ++P N +Y+ I
Sbjct: 672 IVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPK-KLLVP-NNIVYNVAIAGL 729
Query: 462 IRNGKGVDE---LLDSMKADGIDEDEETKEILV 491
+ GK D D + +D DE T IL+
Sbjct: 730 CKAGKLEDARKLFSDLLSSDRFIPDEYTYTILI 762
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF-PDNFSYRICINSYGARSDLEGMEII 223
+ + YN + K G+ E + +++ + + F PD ++Y I I+ D+
Sbjct: 718 NNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINK-AFT 776
Query: 224 LREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYA 283
LR+ + I+ + TY + K +D+A +L K ++ + I YN LI
Sbjct: 777 LRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLV 836
Query: 284 SLGNKSEVLRL 294
GN +E +RL
Sbjct: 837 KSGNVAEAMRL 847
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 111/288 (38%), Gaps = 44/288 (15%)
Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191
QTY AL + Y + +A + M+ GI + YN ++ K KV D++ E
Sbjct: 542 QTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIE 601
Query: 192 MKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251
++A+ + P +Y I + ++ EM + I L+ + + A+ + +
Sbjct: 602 LRARGLTPTVATYGALITGWCNIGMIDKAYATCFEM-IEKGITLNVNICSKIANSLFRLD 660
Query: 252 LIDKASDVLKK--------------------------------------AEERLEQKDGI 273
ID+A +L+K ++L + I
Sbjct: 661 KIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNI 720
Query: 274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI--TMLEALMKLGEHEEAEKVLK 331
YN I+ G + +L+ + + R+I +Y ++ G+ +A +
Sbjct: 721 VYNVAIAGLCKAGKLEDARKLFS-DLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRD 779
Query: 332 EWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNS 379
E L G + NA+I G C G V A+ +L L +KG TPN+
Sbjct: 780 EMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKG--ITPNA 825
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 90/410 (21%), Positives = 185/410 (45%), Gaps = 36/410 (8%)
Query: 92 GICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKAL 151
GIC D ++ LDL+ ++ N+K D TY T +++ R D A+
Sbjct: 202 GICRSG--DTSLALDLLRKMEE--------RNVKADVFTYST---IIDSLCRDGCIDAAI 248
Query: 152 SHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSY 211
S F++M+ GI S +TYN ++ K G++ +L +M ++ I P+ ++ + ++ +
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVF 308
Query: 212 GARSDLEGMEIILREMESQ---PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE 268
L+ + +EM ++ P+I+ TY + Y N + +A+++L
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNII----TYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364
Query: 269 QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT---MLEALMKLGEHEE 325
D + + LI Y + + ++++ + KR + + +T +++ + G+ +
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVF---RNISKRGLVANAVTYSILVQGFCQSGKIKL 421
Query: 326 AEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA 385
AE++ +E G D ++ G C+NG ++ A I EDL + + +
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIE 481
Query: 386 GYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445
G GK E + L + KG KP+ T ++S L +GS+ + + +
Sbjct: 482 GMCKGGKVEDAWN-----LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Query: 446 --VIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV 491
P N Y+ I+A++R+G +L++ MK+ G D + ++++
Sbjct: 537 DGNAP-NDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 585
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 89/446 (19%), Positives = 174/446 (39%), Gaps = 38/446 (8%)
Query: 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGI------------CVFAPCDHAVQLDLIGRV 111
+ R + + K+F+ L+ + GI C C ++G+V
Sbjct: 90 DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKV 149
Query: 112 HGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYND 171
Y E T+ L+ + + +A+ +M E G +TYN
Sbjct: 150 MKL----GY-------EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNS 198
Query: 172 IMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQP 231
I+ ++G D+L +M+ +N+ D F+Y I+S ++ + +EME++
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK- 257
Query: 232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEV 291
I TY S KA + + +LK R + I +N L+ ++ G E
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 317
Query: 292 LRLWDLEKTACKRYINRDYI---TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAV 348
L+ K R I+ + I T+++ EA +L + S D ++
Sbjct: 318 NELY---KEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 374
Query: 349 IIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYV 408
I GYC V + + ++ ++G +++++ G+ +GK + + + +S
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS--- 431
Query: 409 EGKGWKPDPKVITSILSKLGDEGSVQD-VEAFVAALRTVIPMNRQMYHAFIKANIRNGKG 467
G PD +L L D G ++ +E F ++ + + MY I+ + GK
Sbjct: 432 --HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKV 489
Query: 468 VD--ELLDSMKADGIDEDEETKEILV 491
D L S+ G+ + T +++
Sbjct: 490 EDAWNLFCSLPCKGVKPNVMTYTVMI 515
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 182/430 (42%), Gaps = 32/430 (7%)
Query: 77 RFSQALEVSDWMNRKGICVFAPCDHAVQ-----LDLIGRVHGFLSAESYFSNLKDDEKTY 131
+F + E + +NR I FAP D L IGRV +A+ F + E
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVD---AAKDLFYRIPKPEIV- 354
Query: 132 QTYGALLNCYVRQRQTDKALSHFRKM-KEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLT 190
+ L++ +V + D A + M GI TYN ++ Y K G +VL
Sbjct: 355 -IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLH 413
Query: 191 EMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES---QPHIVLDWSTYASAAHFY 247
+M+ K P+ +SY I ++ + ++ +L EM + +P+ V ++ SA +
Sbjct: 414 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV-GFNCLISA---F 469
Query: 248 IKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR-LWDLEKTACKRYI 306
K + I +A ++ ++ + + D +N LIS L E+ LW L + +
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS---GLCEVDEIKHALWLLRDMISEGVV 526
Query: 307 NR--DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAI 364
Y T++ A ++ GE +EA K++ E G+ D N++I G C G V A ++
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL 586
Query: 365 LEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL 424
E ++ G A + S ++ G +G E + K + +G PD S++
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVL-----RGSTPDIVTFNSLI 641
Query: 425 SKLGDEGSVQDVEAFVAALRTV-IPMNRQMYHAFIKANIRNGKGVDE--LLDSMKADGID 481
+ L G ++D L+ IP + ++ + + G D LLD DG
Sbjct: 642 NGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFV 701
Query: 482 EDEETKEILV 491
+ T IL+
Sbjct: 702 PNHRTWSILL 711
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/402 (21%), Positives = 152/402 (37%), Gaps = 86/402 (21%)
Query: 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189
T T+G ++ + + D ALS R M + G +++ Y ++ SK + + +L
Sbjct: 216 TLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLL 275
Query: 190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249
EM PD ++ ++IL K
Sbjct: 276 EEMFLMGCVPDAETFN---------------DVILG---------------------LCK 299
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309
+ I++A+ ++ + R D I Y +L++ +G D K R +
Sbjct: 300 FDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRV-------DAAKDLFYRIPKPE 352
Query: 310 YI---TMLEALMKLGEHEEAEKVLKEWELS-GNSYDTRIPNAVIIGYCNNGLVQNAEAIL 365
+ T++ + G ++A+ VL + S G D N++I GY GLV A +L
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 366 EDLVEKGKATTPNSWAVVAAGYFDAGKTER------------------GFQCMKAALS-- 405
D+ KG S+ ++ G+ GK + GF C+ +A
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472
Query: 406 --------VYVE--GKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIP----MNR 451
++ E KG KPD S++S L + V +++ + LR +I N
Sbjct: 473 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE---VDEIKHALWLLRDMISEGVVANT 529
Query: 452 QMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV 491
Y+ I A +R G K +L++ M G DE T L+
Sbjct: 530 VTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI 571
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
T+ +L+N R + + L+ FRK++ GI T+T+N +M K G +L E
Sbjct: 636 TFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEG 695
Query: 193 KAKNIFPDNFSYRICINS 210
P++ ++ I + S
Sbjct: 696 IEDGFVPNHRTWSILLQS 713
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 155/363 (42%), Gaps = 11/363 (3%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
+Y ++N Y R + DK MK G+ ++ Y I+ L + + + + +EM
Sbjct: 283 SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM 342
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
+ I PD Y I+ + R D+ EM S+ I D TY + + +
Sbjct: 343 IRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGD 401
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD-LEKTACKRYINRDYI 311
+ +A + + + + D + + LI+ Y G+ + R+ + + + C + Y
Sbjct: 402 MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV-VTYT 460
Query: 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK 371
T+++ L K G+ + A ++L E G + N+++ G C +G ++ A ++ +
Sbjct: 461 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 520
Query: 372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG 431
G ++ + Y +G+ ++ + +K L GKG +P +++ G
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEML-----GKGLQPTIVTFNVLMNGFCLHG 575
Query: 432 SVQDVEAFVA-ALRTVIPMNRQMYHAFIKA-NIRNG-KGVDELLDSMKADGIDEDEETKE 488
++D E + L I N +++ +K IRN K + M + G+ D +T E
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYE 635
Query: 489 ILV 491
LV
Sbjct: 636 NLV 638
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 1/212 (0%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY +++N + ++A+ + + G+ T+TY +M Y K+G+ +K ++L EM
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
K + P ++ + +N + LE E +L M ++ I + +T+ S Y N
Sbjct: 553 LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNSLVKQYCIRNN 611
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT 312
+ A+ + K R DG Y L+ + N E L+ K Y
Sbjct: 612 LKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSV 671
Query: 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRI 344
+++ +K + EA +V + G + D I
Sbjct: 672 LIKGFLKRKKFLEAREVFDQMRREGLAADKEI 703
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 131/310 (42%), Gaps = 37/310 (11%)
Query: 151 LSHFRKMKEMGIALSTLTYNDIMCL-YSKTGQYEKVPDVLTEM--------KAKNIFPDN 201
+S F + ++ + S + + D++ Y G +V DV ++ +A+ +F
Sbjct: 142 ISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKM 201
Query: 202 FSYRICI-----NSYGARSDLEGME-----IILREMESQPHIVLDW--STYASAAHFYIK 249
+Y + + N Y R + + I+ RE P + + W ++Y HF +
Sbjct: 202 LNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREF---PEVGVCWNVASYNIVIHFVCQ 258
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309
I +A +L E + D I Y+ +++ Y G +V +L ++ K + +
Sbjct: 259 LGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYI 318
Query: 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369
Y +++ L ++ + EAE+ E G DT + +I G+C G ++ A ++
Sbjct: 319 YGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEM- 377
Query: 370 EKGKATTPN--SWAVVAAGYFDAGKTERGFQCMKAALSVYVE--GKGWKPDPKVITSILS 425
+ TP+ ++ + +G+ G M A ++ E KG +PD T +++
Sbjct: 378 -HSRDITPDVLTYTAIISGFCQIGD-------MVEAGKLFHEMFCKGLEPDSVTFTELIN 429
Query: 426 KLGDEGSVQD 435
G ++D
Sbjct: 430 GYCKAGHMKD 439
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 151/341 (44%), Gaps = 17/341 (4%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
T+ +LL R + A + F +M I +YN ++ K GQ + ++L +M
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
K I P+ SY I+ + + + EM I LD +Y + Y K
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL-GIALDRVSYNTLLSIYTKVGR 459
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT 312
++A D+L++ +KD + YN L+ Y G EV +++ K Y T
Sbjct: 460 SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYST 519
Query: 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
+++ K G ++EA ++ +E++ +G D + +A+I C NGLV +A ++++++ ++G
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579
Query: 373 KATTPNSWAVVAAGYFDAGKTER--------GFQCMKAALSVYVEGKGWKPDPKVITSIL 424
+ ++ + + + +R +ALS E +G + + +
Sbjct: 580 ISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNR-----VIQLF 634
Query: 425 SKLGDEG---SVQDVEAFVAALRTVIPMNRQMYHAFIKANI 462
+L E + +D E + L ++ + R+M+ IK N+
Sbjct: 635 GQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNV 675
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 147/341 (43%), Gaps = 24/341 (7%)
Query: 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG-QYEKVPDV 188
T + AL++ Y R ++A+S F MKE G+ + +TYN ++ K G ++++V
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326
Query: 189 LTEMKAKNIFPDNFSYRICINSYGA---RSDL-EGMEIILREMESQPHIVLDWSTYASAA 244
EM+ + PD RI NS A R L E + EM ++ I D +Y +
Sbjct: 327 FDEMQRNGVQPD----RITFNSLLAVCSRGGLWEAARNLFDEMTNR-RIEQDVFSYNTLL 381
Query: 245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR 304
K +D A ++L + + + + Y+ +I +A G E L L+ +
Sbjct: 382 DAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIA 441
Query: 305 YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAI 364
Y T+L K+G EEA +L+E G D NA++ GY G + +
Sbjct: 442 LDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKV 501
Query: 365 LEDLVEKGKATTPN--SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK--GWKPDPKVI 420
++ K + PN +++ + GY G K A+ ++ E K G + D +
Sbjct: 502 FTEM--KREHVLPNLLTYSTLIDGYSKGG-------LYKEAMEIFREFKSAGLRADVVLY 552
Query: 421 TSILSKLGDEGSVQDVEAFVAAL-RTVIPMNRQMYHAFIKA 460
++++ L G V + + + + I N Y++ I A
Sbjct: 553 SALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 128 EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187
+K TY ALL Y +Q + D+ F +MK + + LTY+ ++ YSK G Y++ +
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535
Query: 188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFY 247
+ E K+ + D Y I++ ++ L G + L + ++ I + TY S +
Sbjct: 536 IFREFKSAGLRADVVLYSALIDAL-CKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594
Query: 248 IKANLIDKASD 258
++ +D+++D
Sbjct: 595 GRSATMDRSAD 605
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/469 (21%), Positives = 197/469 (42%), Gaps = 59/469 (12%)
Query: 61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRV--HGFLSAE 118
RV E ++ + + K+ + VS +N G+C+ A L LI R+ +GF E
Sbjct: 155 RVSEAVALVDRMVEMKQRPDLVTVSTLIN--GLCLKGRVSEA--LVLIDRMVEYGFQPDE 210
Query: 119 SYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK 178
TYG +LN + + AL FRKM+E I S + Y+ ++ K
Sbjct: 211 V-------------TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 257
Query: 179 TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWS 238
G ++ + EM+ K I D +Y I + +LREM + +I+ D
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR-NIIPDVV 316
Query: 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLE 298
T+++ ++K + +A ++ + R D I YN LI + E +++DL
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376
Query: 299 KT-ACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL 357
+ C+ I Y ++ + K ++ ++ +E G +T N +++G+C +G
Sbjct: 377 VSKGCEPDI-VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC--------MKAALSVY-- 407
+ A+ + +++V +G + ++ ++ G D G+ + + M + +Y
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495
Query: 408 --------------------VEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-- 445
+ KG KPD ++ L +GS+ + + ++
Sbjct: 496 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Query: 446 VIPMNRQMYHAFIKANIRNGKGV---DELLDSMKADGIDEDEETKEILV 491
P + Y+ I+A++ G G+ EL++ MK G D T ++++
Sbjct: 556 CTP-DDFTYNILIRAHL-GGSGLISSVELIEEMKVCGFSADSSTIKMVI 602
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/381 (19%), Positives = 148/381 (38%), Gaps = 54/381 (14%)
Query: 128 EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM---CLYSKTGQYEK 184
E T ++NCY R+++ A S + ++G T+T++ ++ CL + +
Sbjct: 102 EHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVA 161
Query: 185 VPDVLTEMKAKNIFPDNFSYRICINSYGARSDL-EGMEIILREME--SQPHIVLDWSTYA 241
+ D + EMK + PD + IN + + E + +I R +E QP D TY
Sbjct: 162 LVDRMVEMKQR---PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP----DEVTYG 214
Query: 242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL------- 294
+ K+ A D+ +K EER + + Y+ +I G+ + L L
Sbjct: 215 PVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 295 ---------------------WDLEKTACKRYINRDYI-------TMLEALMKLGEHEEA 326
WD + I R+ I +++ +K G+ EA
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334
Query: 327 EKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG 386
+++ E G + DT N++I G+C + A + + +V KG +++++
Sbjct: 335 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 394
Query: 387 YFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDV-EAFVAALRT 445
Y A + + G + + + KG P+ +++ G + E F +
Sbjct: 395 YCKAKRVDDGMRLFRE-----ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 449
Query: 446 VIPMNRQMYHAFIKANIRNGK 466
+P + Y + NG+
Sbjct: 450 GVPPSVVTYGILLDGLCDNGE 470
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 147/361 (40%), Gaps = 40/361 (11%)
Query: 48 PELDNWVKNGNKVRVGELQR----------------IIRDLRKRKRFSQALEVSDWMNRK 91
P L+ K+GN +L R +I L K F AL + + M K
Sbjct: 215 PVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 92 GICVFAPCDHAVQLDLIGRV--------HGFLSAESYFSNLKDDEKTYQTYGALLNCYVR 143
GI D LIG + + E N+ D T+ AL++ +V+
Sbjct: 275 GI----KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD---VVTFSALIDVFVK 327
Query: 144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFS 203
+ + +A + +M GIA T+TYN ++ + K + + M +K PD +
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387
Query: 204 YRICINSY--GARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK 261
Y I INSY R D +GM + RE+ S+ ++ + TY + + ++ ++ A ++ +
Sbjct: 388 YSILINSYCKAKRVD-DGMR-LFREISSK-GLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444
Query: 262 KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD-LEKTACKRYINRDYITMLEALMKL 320
+ R + Y L+ G ++ L +++ ++K+ I Y ++ +
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNA 503
Query: 321 GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW 380
+ ++A + G D N +I G C G + A+ + + E G TP+ +
Sbjct: 504 SKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG--CTPDDF 561
Query: 381 A 381
Sbjct: 562 T 562
Score = 39.7 bits (91), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 66/354 (18%), Positives = 141/354 (39%), Gaps = 19/354 (5%)
Query: 146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR 205
+ + A+ F M + + + +N + ++T QY+ V M+ I D ++
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109
Query: 206 ICINSYGARSDLE-GMEIILR--EMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK 262
I IN Y + L ++ R ++ +P D T+++ + + + +A ++ +
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEP----DTITFSTLVNGFCLEGRVSEAVALVDR 165
Query: 263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE 322
E ++ D + + LI+ G SE L L D + Y +L L K G
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV 382
A + ++ E + VI C +G +A ++ ++ KG +++
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 285
Query: 383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAA 442
+ G + GK + G + ++ + G+ PD ++++ EG + + +
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMI-----GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 340
Query: 443 L--RTVIP---MNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILV 491
+ R + P + F K N + +++ D M + G + D T IL+
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLH--EANQMFDLMVSKGCEPDIVTYSILI 392
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 105/456 (23%), Positives = 189/456 (41%), Gaps = 32/456 (7%)
Query: 33 YSIISPLGNPGTR--IEPELDNW------------VKNGNKVRVGELQRIIRDLRKRKRF 78
Y +SP G R IEP D+ K+ + EL ++ L K+F
Sbjct: 92 YHGLSPQGQQVLRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKF 151
Query: 79 SQALEVSDW-MNRKGI-CVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQ--TY 134
AL DW M +K + A+ + ++G+ SA + F+ L++D + +Y
Sbjct: 152 DLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSY 211
Query: 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ-YEKVPDVLTEMK 193
+L++ + + +A++ F+KM+E G + +TYN I+ ++ K G + K+ ++ +MK
Sbjct: 212 TSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMK 271
Query: 194 AKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI 253
+ I PD ++Y I S + + EM++ D TY + Y K++
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAA-GFSYDKVTYNALLDVYGKSHRP 330
Query: 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITM 313
+A VL + + YN LIS YA G E + L + + Y T+
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 314 LEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 373
L + G+ E A + +E +G + NA I Y N G I +++ G
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450
Query: 374 ATTPNSWAVVAAGYFDAG---KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE 430
+ +W + A + G + F+ MK A G+ P+ + +++S
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA--------GFVPERETFNTLISAYSRC 502
Query: 431 GSV-QDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465
GS Q + + L + + Y+ + A R G
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/381 (20%), Positives = 158/381 (41%), Gaps = 13/381 (3%)
Query: 23 YTNRINKTTLYSIISPLGNPG--TRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQ 80
Y + ++ + + IIS LG G + + ++G + V +I R+ +
Sbjct: 167 YQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYRE 226
Query: 81 ALEVSDWMNRKGICVFAPCDHAVQLDLIGRV-HGFLSAESYFSNLKDD--EKTYQTYGAL 137
A+ V M G C + V L++ G++ + S +K D TY L
Sbjct: 227 AVNVFKKMEEDG-CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTL 285
Query: 138 LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNI 197
+ C R +A F +MK G + +TYN ++ +Y K+ + ++ VL EM
Sbjct: 286 ITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGF 345
Query: 198 FPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKAS 257
P +Y I++Y AR + + L+ ++ D TY + + +A ++ A
Sbjct: 346 SPSIVTYNSLISAY-ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404
Query: 258 DVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI---TML 314
+ ++ + + +N I +Y + G +E+++++D E C ++ D + T+L
Sbjct: 405 SIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD-EINVCG--LSPDIVTWNTLL 461
Query: 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374
+ G E V KE + +G + N +I Y G + A + +++ G
Sbjct: 462 AVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVT 521
Query: 375 TTPNSWAVVAAGYFDAGKTER 395
+++ V A G E+
Sbjct: 522 PDLSTYNTVLAALARGGMWEQ 542
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/401 (19%), Positives = 163/401 (40%), Gaps = 23/401 (5%)
Query: 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLS 116
G K + I+ R +F++ +++ D +N +C +P V + + V G
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN---VCGLSP--DIVTWNTLLAVFGQNG 468
Query: 117 AESYFSNLKDDEKTY------QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYN 170
+S S + + K +T+ L++ Y R ++A++ +R+M + G+ TYN
Sbjct: 469 MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYN 528
Query: 171 DIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES- 229
++ ++ G +E+ VL EM+ P+ +Y +++Y ++ M + E+ S
Sbjct: 529 TVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSG 588
Query: 230 --QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN 287
+P VL + + K +L+ +A + +ER D N ++S+Y
Sbjct: 589 VIEPRAVLLKTLVLVCS----KCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQM 644
Query: 288 KSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNA 347
++ + D K Y +++ + + ++E++L+E G D N
Sbjct: 645 VAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNT 704
Query: 348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY 407
VI YC N +++A I ++ G ++ Y E ++ Y
Sbjct: 705 VIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR-----Y 759
Query: 408 VEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIP 448
+ G +P+ SI+ + + FV LR + P
Sbjct: 760 MIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDP 800
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 109/249 (43%), Gaps = 9/249 (3%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY ALL+ Y + + +A+ +M G + S +TYN ++ Y++ G ++ ++ +M
Sbjct: 316 TYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM 375
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES---QPHIVLDWSTYASAAHFYIK 249
K PD F+Y ++ + +E I EM + +P+I T+ + Y
Sbjct: 376 AEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNIC----TFNAFIKMYGN 431
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309
+ + + D + +N L++++ G SEV ++ K A
Sbjct: 432 RGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERET 491
Query: 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369
+ T++ A + G E+A V + +G + D N V+ G+ + +E +L ++
Sbjct: 492 FNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM- 550
Query: 370 EKGKATTPN 378
E G+ PN
Sbjct: 551 EDGRC-KPN 558
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 149/317 (47%), Gaps = 18/317 (5%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
Y A+++ + ++ + A F++++ GI + +TY ++ + ++ +L++M
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 194 AKNIFPDNFSYRICINSYGARSD-LEGMEII--LREMESQPHIVLDWSTYASAAHFYIKA 250
K I P+ +Y ++++ LE E+ + M P IV TY+S +
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV----TYSSLINGLCLH 308
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD- 309
+ ID+A+ + + D + YN LI+ + + ++L+ + +R + +
Sbjct: 309 DRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF---REMSQRGLVSNT 365
Query: 310 --YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
Y T+++ + G+ ++A++ + + G S D N ++ G C+NG ++ A I ED
Sbjct: 366 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425
Query: 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427
+ ++ ++ V G GK E + + +LS+ KG KPD T+++S L
Sbjct: 426 MQKREMDLDIVTYTTVIRGMCKTGKVEEAWS-LFCSLSL----KGLKPDIVTYTTMMSGL 480
Query: 428 GDEGSVQDVEAFVAALR 444
+G + +VEA ++
Sbjct: 481 CTKGLLHEVEALYTKMK 497
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 22/334 (6%)
Query: 50 LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAP--CDHAVQLDL 107
+D V+ G K + II L K KR + A + + RKGI P + ++
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGI---RPNVVTYTALVNG 234
Query: 108 IGRVHGFLSAESYFSNLKDDEKTYQ--TYGALLNCYVRQRQTDKALSHFRKMKEMGIALS 165
+ + A S++ + T TY ALL+ +V+ + +A F +M M I
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294
Query: 166 TLTYNDI---MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI 222
+TY+ + +CL+ + + ++ D+ M +K D SY IN + +E
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDL---MVSKGCLADVVSYNTLINGFCKAKRVEDGMK 351
Query: 223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLY 282
+ REM SQ +V + TY + + +A +DKA + + + D YN L+
Sbjct: 352 LFREM-SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410
Query: 283 ASLGNKSEVLRLW-DLEKTACKRYINRD---YITMLEALMKLGEHEEAEKVLKEWELSGN 338
G + L ++ D++K R ++ D Y T++ + K G+ EEA + L G
Sbjct: 411 CDNGELEKALVIFEDMQK----REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466
Query: 339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
D ++ G C GL+ EA+ + ++G
Sbjct: 467 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 13/271 (4%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
+ LL+ V+ ++ D +S +KM+ +GI T+N ++ + Q +L +M
Sbjct: 88 FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147
Query: 194 AKNIFPDNFSYRICINSYGAR---SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA 250
PD + +N + R SD + + E+ +P IV Y + K
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIV----AYNAIIDSLCKT 203
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY 310
++ A D K+ E + + + + Y L++ + S+ RL K+ I +
Sbjct: 204 KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL---SDMIKKKITPNV 260
Query: 311 IT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
IT +L+A +K G+ EA+++ +E D +++I G C + + A + +
Sbjct: 261 ITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDL 320
Query: 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQ 398
+V KG S+ + G+ A + E G +
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMK 351
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/407 (21%), Positives = 165/407 (40%), Gaps = 51/407 (12%)
Query: 102 AVQLDLIGRVHGFLSAESYFSNLKDDEK--------TYQTYGALLNCYVRQRQTDKALSH 153
+ L + + F AE +F DE + TY +++ Y + Q +A
Sbjct: 261 GIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASET 320
Query: 154 FRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV------------PDVLT----------- 190
F++M E GI +T+T+N ++ +Y GQ +V PD T
Sbjct: 321 FKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKLHCAPDTRTYNILISLHTKN 380
Query: 191 -----------EMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWST 239
EMK + PD SYR + ++ R +E E ++ EM+ ++ +D T
Sbjct: 381 NDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDD-NVEIDEYT 439
Query: 240 YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEK 299
++ Y++A +++K+ K+ GY+ I Y G SE R++ +
Sbjct: 440 QSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSE-GYSANIDAYGERGYLSEAERVFICCQ 498
Query: 300 TACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ 359
KR + +Y M++A E+A ++ + G + D N ++ + +
Sbjct: 499 EVNKRTV-IEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPH 557
Query: 360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKV 419
LE + E G + + V + + G+ + K + +E PD V
Sbjct: 558 KGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIE-----PDVVV 612
Query: 420 ITSILSKLGDEGSVQDVEAFVAALRTV-IPMNRQMYHAFIKANIRNG 465
+++ D G+VQ ++V A++ IP N +Y++ IK + G
Sbjct: 613 YGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVG 659
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 137/345 (39%), Gaps = 49/345 (14%)
Query: 101 HAVQLDLIGRVHGFLS-AESYFSNLKD-DEKTYQTYGALLNCYVRQRQTDKALSHFRKMK 158
++ +D G G+LS AE F ++ +++T Y ++ Y + +KA F M
Sbjct: 474 YSANIDAYGE-RGYLSEAERVFICCQEVNKRTVIEYNVMIKAYGISKSCEKACELFESMM 532
Query: 159 EMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE 218
G+ TYN L ++ A P + R LE
Sbjct: 533 SYGVTPDKCTYN-----------------TLVQILASADMP-----------HKGRCYLE 564
Query: 219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL 278
M + V D Y + ++K ++ A +V K+ E + D + Y L
Sbjct: 565 KMR--------ETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVL 616
Query: 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN 338
I+ +A GN + + + K A + Y ++++ K+G +EAE + ++ S N
Sbjct: 617 INAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCN 676
Query: 339 SY---DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395
D N +I Y +V+ AEAI + + ++G+A ++A++ Y G+ E
Sbjct: 677 KTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEA-NEFTFAMMLCMYKKNGRFEE 735
Query: 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD-VEAF 439
Q K + + DP S+L +G ++ VE F
Sbjct: 736 ATQIAKQMREMKI-----LTDPLSYNSVLGLFALDGRFKEAVETF 775
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 9/245 (3%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY L+ K + KM+E G + Y ++ + K GQ +V EM
Sbjct: 542 TYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEM 601
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
NI PD Y + IN++ +++ + M+ + I + Y S Y K
Sbjct: 602 VEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMK-EAGIPGNSVIYNSLIKLYTKVGY 660
Query: 253 IDKASDVLKKAEE---RLEQKDGIGYNFLISLYA--SLGNKSEVLRLWDLEKTACKRYIN 307
+D+A + +K + + + D N +I+LY+ S+ K+E + ++ +
Sbjct: 661 LDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEANEFT- 719
Query: 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
+ ML K G EEA ++ K+ D N+V+ + +G + A ++
Sbjct: 720 --FAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKE 777
Query: 368 LVEKG 372
+V G
Sbjct: 778 MVSSG 782
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 117 AESYFSNLKD-DEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCL 175
AE+ F ++K E T+ +L Y + + ++A ++M+EM I L+YN ++ L
Sbjct: 702 AEAIFDSMKQRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGL 761
Query: 176 YSKTGQYEKVPDVLTEMKAKNIFPDNFSYR 205
++ G++++ + EM + I PD+ +++
Sbjct: 762 FALDGRFKEAVETFKEMVSSGIQPDDSTFK 791
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/395 (21%), Positives = 165/395 (41%), Gaps = 50/395 (12%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TYG ++N ++ D ALS +KM++ I + YN I+ K + ++ TEM
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284
Query: 193 KAKNIFPDNFSYR---ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249
K I PD F+Y C+ +YG SD + + E + P++V T+++ ++K
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV----TFSALIDAFVK 340
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLE----------- 298
+ +A + + +R D Y+ LI+ + E +++L
Sbjct: 341 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 400
Query: 299 -----KTACK-----------RYINR--------DYITMLEALMKLGEHEEAEKVLKEWE 334
K CK R +++ Y T++ + + + A+ V K+
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 460
Query: 335 LSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394
G + N ++ G C NG + A + E L ++ ++ G AGK E
Sbjct: 461 SVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVE 520
Query: 395 RGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM-NRQM 453
G++ L + KG P+ +++S +GS ++ ++ + ++ P+ N
Sbjct: 521 DGWE-----LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGT 575
Query: 454 YHAFIKANIRNG--KGVDELLDSMKADGIDEDEET 486
Y+ I+A +R+G + EL+ M++ G D T
Sbjct: 576 YNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 610
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 131/298 (43%), Gaps = 8/298 (2%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
T+ AL++ +V++ + +A + +M + I TY+ ++ + + ++ + M
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389
Query: 193 KAKNIFPDNFSYRICINSYG-ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251
+K+ FP+ +Y I + A+ EGME+ REM SQ +V + TY + H + +A
Sbjct: 390 ISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL-FREM-SQRGLVGNTVTYTTLIHGFFQAR 447
Query: 252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI 311
D A V K+ + + YN L+ G ++ + +++ + + Y
Sbjct: 448 DCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 507
Query: 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK 371
M+E + K G+ E+ ++ L G S + N +I G+C G + A+++L+ + E
Sbjct: 508 IMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED 567
Query: 372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429
G ++ + G E + +K S G+ D I + + L D
Sbjct: 568 GPLPNSGTYNTLIRARLRDGDREASAELIKEMRSC-----GFAGDASTIGLVTNMLHD 620
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 91/414 (21%), Positives = 168/414 (40%), Gaps = 63/414 (15%)
Query: 39 LGNPGTRIEPELDNWVKNGNKVRV-----GELQRIIRDLRKRKRFSQALEVSDWMNRKGI 93
+GNP T P N +G R G+ + I+R+ R S ++V D ++ G
Sbjct: 21 IGNPPT--VPSFFNLCGSGCWERSFASASGDYREILRN-----RLSDIIKVDDAVDLFGD 73
Query: 94 CVFA-PCDHAVQ----LDLIGRVHGF---LSAESYFSNLKDDEKTYQTYGALLNCYVRQR 145
V + P V+ L + +++ F +S L Y TY +NC+ R+
Sbjct: 74 MVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLY-TYSIFINCFCRRS 132
Query: 146 QTDKALSHFRKMKEMG-----IALSTLT--------YNDIMCLYSKTGQYEKVPDVLT-- 190
Q AL+ KM ++G + LS+L +D + L + + PD T
Sbjct: 133 QLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFT 192
Query: 191 --------------------EMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQ 230
+M + PD +Y +N R D++ +L++ME +
Sbjct: 193 TLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME-K 251
Query: 231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290
I D Y + K +D A ++ + + + + D Y+ LIS + G S+
Sbjct: 252 GKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSD 311
Query: 291 VLRLWDLEKTACKRYINRDYIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNA 347
RL +R IN + +T +++A +K G+ EAEK+ E D ++
Sbjct: 312 ASRLL---SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 368
Query: 348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMK 401
+I G+C + + A+ + E ++ K +++ + G+ A + E G + +
Sbjct: 369 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 126/308 (40%), Gaps = 24/308 (7%)
Query: 50 LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG 109
+D +VK G V E +++ ++ KR S +N G C+ D A +
Sbjct: 335 IDAFVKEGKLV---EAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHM---- 385
Query: 110 RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY 169
+ ++ F N+ TY L+ + + ++ ++ + FR+M + G+ +T+TY
Sbjct: 386 --FELMISKDCFPNV-------VTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 436
Query: 170 NDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES 229
++ + + + V +M + + P+ +Y I ++ L ++ ++
Sbjct: 437 TTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ- 495
Query: 230 QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS 289
+ + D TY KA ++ ++ + + I YN +IS + G+K
Sbjct: 496 RSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKE 555
Query: 290 EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349
E L K + Y T++ A ++ G+ E + +++KE G + D A
Sbjct: 556 EADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGD-----AST 610
Query: 350 IGYCNNGL 357
IG N L
Sbjct: 611 IGLVTNML 618
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 72/181 (39%), Gaps = 5/181 (2%)
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT 312
+D A D+ + + +N L+S A + V+ L + +T + Y
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
+ + + A VL + G D ++++ GYC++ + +A A+++ +VE G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 373 KATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS 432
++ + G F K AL + +G +PD ++++ L G
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEA-----VALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238
Query: 433 V 433
+
Sbjct: 239 I 239
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 86/404 (21%), Positives = 177/404 (43%), Gaps = 16/404 (3%)
Query: 68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD 127
+I L + R S+A+ + D M KG C + + ++ + + A S ++
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKG-CQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG 250
Query: 128 --EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV 185
E Y +++ + + AL+ F +M GI + +TYN ++ G++
Sbjct: 251 KIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDA 310
Query: 186 PDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAH 245
+L++M + I P+ ++ I+++ L E + EM + I D TY+S +
Sbjct: 311 SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLIN 369
Query: 246 FYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY 305
+ + +D+A + + + + + YN LI + E + L+ + +R
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF---REMSQRG 426
Query: 306 I---NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAE 362
+ Y T++ + E + A+ V K+ G D + ++ G CNNG V+ A
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486
Query: 363 AILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422
+ E L ++ ++ G AGK E G+ + +LS+ KG KP+ T+
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWD-LFCSLSL----KGVKPNVVTYTT 541
Query: 423 ILSKLGDEGSVQDVEAFVAALRTVIPM-NRQMYHAFIKANIRNG 465
++S +G ++ +A ++ P+ + Y+ I+A++R+G
Sbjct: 542 MMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 130/310 (41%), Gaps = 48/310 (15%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLY----------SKTGQY 182
TY L+NC+ R+ Q AL+ KM ++G +T N ++ + S GQ
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177
Query: 183 EKV---PDVLT----------------------EMKAKNIFPDNFSYRICINSYGARSDL 217
++ PD T M K PD +Y I +N R D+
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237
Query: 218 EGMEIILREMES---QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG 274
+ +L++ME +P +V+ ++T A Y N A ++ + + + + + +
Sbjct: 238 DLALSLLKKMEQGKIEPGVVI-YNTIIDALCNYKNVN---DALNLFTEMDNKGIRPNVVT 293
Query: 275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT---MLEALMKLGEHEEAEKVLK 331
YN LI + G S+ RL +R IN + +T +++A +K G+ EAEK+
Sbjct: 294 YNSLIRCLCNYGRWSDASRLL---SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350
Query: 332 EWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391
E D +++I G+C + + A+ + E ++ K ++ + G+ A
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410
Query: 392 KTERGFQCMK 401
+ + G + +
Sbjct: 411 RVDEGMELFR 420
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/283 (18%), Positives = 119/283 (42%), Gaps = 19/283 (6%)
Query: 50 LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG 109
+D +VK G V E +++ ++ KR S +N G C+ D A +
Sbjct: 333 IDAFVKEGKLV---EAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHM---- 383
Query: 110 RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY 169
+ ++ F N+ TY L+ + + ++ D+ + FR+M + G+ +T+TY
Sbjct: 384 --FELMISKDCFPNV-------VTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTY 434
Query: 170 NDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES 229
++ + + + + V +M + + PD +Y I ++ +E ++ ++
Sbjct: 435 TTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQ- 493
Query: 230 QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS 289
+ + D TY KA ++ D+ + + + + Y ++S + G K
Sbjct: 494 RSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKE 553
Query: 290 EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKE 332
E L+ K + Y T++ A ++ G+ + ++++E
Sbjct: 554 EADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIRE 596
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 111/263 (42%), Gaps = 9/263 (3%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
+ LL+ + + D +S +M+ +GI+ + TY+ ++ + + Q VL +M
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMM 143
Query: 194 AKNIFPDNFSYRICINSY--GAR-SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA 250
PD + +N + G R SD + + EM QP D T+ + H +
Sbjct: 144 KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP----DSFTFNTLIHGLFRH 199
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW-DLEKTACKRYINRD 309
N +A ++ + + Q D + Y +++ G+ L L +E+ + +
Sbjct: 200 NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGV-VI 258
Query: 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369
Y T+++AL +A + E + G + N++I CN G +A +L D++
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318
Query: 370 EKGKATTPNSWAVVAAGYFDAGK 392
E+ +++ + + GK
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGK 341
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 9/231 (3%)
Query: 146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR 205
+ D A++ F M + S + ++ ++ +K +++ V + +M+ I + ++Y
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 206 ICINSYGARSDLEGMEIILREMES---QPHIVLDWSTYASAAHFYIKANLIDKASDVLKK 262
I IN + RS L +L +M +P IV T S + + N I A ++ +
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIV----TLNSLLNGFCHGNRISDAVSLVGQ 176
Query: 263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD-LEKTACKRYINRDYITMLEALMKLG 321
E Q D +N LI SE + L D + C+ + Y ++ L K G
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDL-VTYGIVVNGLCKRG 235
Query: 322 EHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
+ + A +LK+ E I N +I CN V +A + ++ KG
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 109 GRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLT 168
G+V L Y K + Y TY ++ + + + F + G+ + +T
Sbjct: 480 GKVETALVVFEYLQRSKMEPDIY-TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVT 538
Query: 169 YNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME 228
Y +M + + G E+ + EMK + PD+ +Y I ++ D ++REM
Sbjct: 539 YTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 598
Query: 229 S 229
S
Sbjct: 599 S 599
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 160/371 (43%), Gaps = 33/371 (8%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
Y +++ Y R+ A M++ G+ L YN ++ + + G+ E + +MK
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451
Query: 194 AKNIFPDNFSYRICINSYGARSDLEGMEIILREME---SQPHIVLDWSTYASAAHFYIKA 250
K + P +Y I I YG + + + IL+EME + P++V +Y + + K
Sbjct: 452 LKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVV----SYGTLINCLCKG 507
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD- 309
+ + +A V + E+R YN LI S G + R K K+ I +
Sbjct: 508 SKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFR---FSKEMLKKGIELNL 564
Query: 310 --YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
Y T+++ L G+ EAE +L E G D N++I GY G VQ A+ E+
Sbjct: 565 VTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEE 624
Query: 368 LVEKGKATTPNSWAVVAAGYFDAG--KTERGFQCMKAALSVYVEGKGWKPDPKVITSILS 425
+ G T ++ ++ + G TER F M KPD V +L
Sbjct: 625 MKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEM-----------SLKPDLLVYNGVLH 673
Query: 426 KLGDEGSVQDVEAFVAALRTV---IPMNRQMYHAFIKANIRNGK--GVDELLDSMKADGI 480
G ++ +AF + + I +++ Y++ I ++ GK V L+D M A +
Sbjct: 674 CYAVHGDME--KAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREM 731
Query: 481 DEDEETKEILV 491
+ + +T I+V
Sbjct: 732 EPEADTYNIIV 742
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 152/356 (42%), Gaps = 13/356 (3%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY L++ Y + +K+ +MK I S +T+N ++ K G E +VL EM
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
K PD F++ I + Y + E + + E + ++ T + + K
Sbjct: 311 KDLGFVPDAFTFSILFDGYSSNEKAEA-ALGVYETAVDSGVKMNAYTCSILLNALCKEGK 369
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN-KSEVLRLWDLEKTACKRYINRDYI 311
I+KA ++L + + + + YN +I Y G+ +++ +EK K + Y
Sbjct: 370 IEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPD-HLAYN 428
Query: 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK 371
++ +LGE E AEK + + +L G S N +I GY IL+++ +
Sbjct: 429 CLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDN 488
Query: 372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY-VEGKGWKPDPKVITSILSKLGDE 430
G T PN VV+ G +G + ++A + +E +G P ++ ++ +
Sbjct: 489 G--TMPN---VVSYGTL-INCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSK 542
Query: 431 GSVQDVEAFVA-ALRTVIPMNRQMYHAFIKANIRNGK--GVDELLDSMKADGIDED 483
G ++D F L+ I +N Y+ I GK ++LL + G+ D
Sbjct: 543 GKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPD 598
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 87/414 (21%), Positives = 170/414 (41%), Gaps = 24/414 (5%)
Query: 72 LRKRKRFSQALEVSDWMNRKGICVFAPCDH-AVQLDLIGRVHGFLSAESYFSNL--KDDE 128
L + K S+A ++ + +GI + D + LD + + F + F N+ D
Sbjct: 119 LNESKMISEAADLFFALRNEGI--YPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFR 176
Query: 129 KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDV 188
+ YG + V+ K L F +MK I S YN ++ K + +
Sbjct: 177 PSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQL 236
Query: 189 LTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYI 248
EM A+ + P +Y I+ Y + E +RE HI T+ +
Sbjct: 237 FDEMLARRLLPSLITYNTLIDGYCKAGNPEK-SFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR 308
KA +++ A +VLK+ ++ D ++ L Y+S L +++ TA +
Sbjct: 296 KAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYE---TAVDSGVKM 352
Query: 309 DYIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAIL 365
+ T +L AL K G+ E+AE++L G + I N +I GYC G + A +
Sbjct: 353 NAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKI 412
Query: 366 EDLVEKGKATTPNSWAVVAAGYFDAGKTE-----------RGFQCMKAALSVYVEGKGWK 414
E + ++G ++ + + + G+ E +G ++ + G G K
Sbjct: 413 EAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRK 472
Query: 415 PDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGV 468
+ IL ++ D G++ +V ++ + + ++ + +K ++ + +GV
Sbjct: 473 YEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMED-RGV 525
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 114/269 (42%), Gaps = 5/269 (1%)
Query: 124 LKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183
LK + +TY L+ Y R+ + DK ++M++ G + ++Y ++ K +
Sbjct: 452 LKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLL 511
Query: 184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASA 243
+ V +M+ + + P Y + I+ ++ +E +EM + I L+ TY +
Sbjct: 512 EAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEM-LKKGIELNLVTYNTL 570
Query: 244 AHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK 303
+ +A D+L + + + D YN LIS Y GN + L++ K +
Sbjct: 571 IDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGI 630
Query: 304 RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEA 363
+ + Y ++ K G E E++ E L D + N V+ Y +G ++ A
Sbjct: 631 KPTLKTYHLLISLCTKEG-IELTERLFGEMSLKP---DLLVYNGVLHCYAVHGDMEKAFN 686
Query: 364 ILEDLVEKGKATTPNSWAVVAAGYFDAGK 392
+ + ++EK ++ + G GK
Sbjct: 687 LQKQMIEKSIGLDKTTYNSLILGQLKVGK 715
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 11/244 (4%)
Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191
+ Y L++ + + + A ++M + GI L+ +TYN ++ S TG+ + D+L E
Sbjct: 530 RIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLE 589
Query: 192 MKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251
+ K + PD F+Y I+ YG +++ + EM+ + I TY H I
Sbjct: 590 ISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMK-RSGIKPTLKTY----HLLISLC 644
Query: 252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD-- 309
+ + E + D + YN ++ YA G+ + ++L+K ++ I D
Sbjct: 645 TKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDME---KAFNLQKQMIEKSIGLDKT 701
Query: 310 -YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL 368
Y +++ +K+G+ E ++ E + N ++ G+C +A ++
Sbjct: 702 TYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREM 761
Query: 369 VEKG 372
EKG
Sbjct: 762 QEKG 765
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 166/365 (45%), Gaps = 17/365 (4%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
Y +++ + + AL+ F +M GI + +TYN ++ G++ +L++M
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 194 AKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI 253
+ I P+ ++ I+++ L E + EM + I D TY+S + + + +
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIFTYSSLINGFCMHDRL 376
Query: 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI---NRDY 310
D+A + + + + + YN LI + E + L+ + +R + Y
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF---REMSQRGLVGNTVTY 433
Query: 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE 370
T+++ L + G+ + A+K+ K+ G D + ++ G C G ++ A + E L +
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 493
Query: 371 KGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE 430
++ ++ G AGK E G+ + +LS+ KG KP+ + T+++S +
Sbjct: 494 SKMEPDIYTYNIMIEGMCKAGKVEDGWD-LFCSLSL----KGVKPNVIIYTTMISGFCRK 548
Query: 431 GSVQDVEAFVAALRT--VIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEET 486
G ++ +A ++ +P N Y+ I+A +R+G EL+ M++ G D T
Sbjct: 549 GLKEEADALFREMKEDGTLP-NSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDAST 607
Query: 487 KEILV 491
+++
Sbjct: 608 ISMVI 612
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 42/307 (13%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMG-----IALSTLT--------YNDIMCLYSKT 179
+Y L+NC+ R+ Q AL+ KM ++G + LS+L ++ + L +
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176
Query: 180 GQYEKVPDVLT----------------------EMKAKNIFPDNFSYRICINSYGARSDL 217
E P+ +T M A+ PD F+Y +N R D+
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236
Query: 218 EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNF 277
+ +L++ME + I D Y + ++ A ++ + + + + + + YN
Sbjct: 237 DLALSLLKKME-KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295
Query: 278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT---MLEALMKLGEHEEAEKVLKEWE 334
LI + G S+ RL +R IN + +T +++A +K G+ EAEK+ E
Sbjct: 296 LIRCLCNYGRWSDASRLL---SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352
Query: 335 LSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394
D +++I G+C + + A+ + E ++ K ++ + G+ A + E
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412
Query: 395 RGFQCMK 401
G + +
Sbjct: 413 EGMELFR 419
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 124/300 (41%), Gaps = 19/300 (6%)
Query: 50 LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG 109
+D +VK G V E +++ ++ KR S +N G C+ D A +
Sbjct: 332 IDAFVKEGKLV---EAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHM---- 382
Query: 110 RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY 169
+ ++ F N+ TY L+ + + ++ ++ + FR+M + G+ +T+TY
Sbjct: 383 --FELMISKDCFPNV-------VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 433
Query: 170 NDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES 229
N ++ + G + + +M + + PD +Y I ++ LE ++ ++
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ- 492
Query: 230 QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS 289
+ + D TY KA ++ D+ + + + I Y +IS + G K
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 552
Query: 290 EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349
E L+ K + Y T++ A ++ G+ + +++KE G D + VI
Sbjct: 553 EADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI 612
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/370 (21%), Positives = 159/370 (42%), Gaps = 25/370 (6%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TYG +LN + QT A+ RKM+E I L + Y+ I+ K G + ++ EM
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREM---ESQPHIVLDWSTYASAAHFYIK 249
+ K D +Y I + + +LR+M + P++V T++ ++K
Sbjct: 290 EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVV----TFSVLIDSFVK 345
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309
+ +A +LK+ +R + I YN LI + E +++ DL + + D
Sbjct: 346 EGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDL---MISKGCDPD 402
Query: 310 YIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILE 366
+T ++ K ++ ++ +E L G +T N ++ G+C +G ++ A+ + +
Sbjct: 403 IMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQ 462
Query: 367 DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY--VEGKGWKPDPKVITSIL 424
++V + S+ ++ G D G+ E+ AL ++ +E + D + I+
Sbjct: 463 EMVSRRVRPDIVSYKILLDGLCDNGELEK-------ALEIFGKIEKSKMELDIGIYMIII 515
Query: 425 SKLGDEGSVQDV-EAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGID 481
+ + V D + F + + ++ + Y+ I R D L M +G
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHA 575
Query: 482 EDEETKEILV 491
DE T IL+
Sbjct: 576 PDELTYNILI 585
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 150/349 (42%), Gaps = 24/349 (6%)
Query: 62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYF 121
V + R+ + K K++ L + M KGI + ++ ++ R A S
Sbjct: 88 VIDFNRLFSAIAKTKQYELVLALCKQMESKGI-AHSIYTLSIMINCFCRCRKLSYAFSTM 146
Query: 122 SNLKDD--EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI---MCLY 176
+ E + LLN + + +AL +M EMG + +T N + +CL
Sbjct: 147 GKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLN 206
Query: 177 SKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLD 236
K + D + E + P+ +Y +N +LR+ME + +I LD
Sbjct: 207 GKVSDAVVLIDRMVETGFQ---PNEVTYGPVLNVMCKSGQTALAMELLRKMEER-NIKLD 262
Query: 237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD 296
Y+ K +D A ++ + E + + D I YN LI + + G WD
Sbjct: 263 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR-------WD 315
Query: 297 ----LEKTACKRYINRDYIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349
L + KR I+ + +T ++++ +K G+ EA+++LKE G + +T N++I
Sbjct: 316 DGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLI 375
Query: 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQ 398
G+C ++ A +++ ++ KG ++ ++ GY A + + G +
Sbjct: 376 DGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/369 (21%), Positives = 149/369 (40%), Gaps = 17/369 (4%)
Query: 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189
T T L+N + A+ +M E G + +TY ++ + K+GQ ++L
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251
Query: 190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249
+M+ +NI D Y I I+ L+ + EME + D TY + +
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKA-DIITYNTLIGGFCN 310
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309
A D + +L+ +R + + ++ LI + G E +L K +R I +
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLL---KEMMQRGIAPN 367
Query: 310 YIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILE 366
IT +++ K EEA +++ G D N +I GYC + + +
Sbjct: 368 TITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFR 427
Query: 367 DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSK 426
++ +G ++ + G+ +GK E + + +S V +PD +L
Sbjct: 428 EMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV-----RPDIVSYKILLDG 482
Query: 427 LGDEGSVQD-VEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVD---ELLDSMKADGIDE 482
L D G ++ +E F ++ + ++ +Y I + N VD +L S+ G+
Sbjct: 483 LCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHG-MCNASKVDDAWDLFCSLPLKGVKL 541
Query: 483 DEETKEILV 491
D I++
Sbjct: 542 DARAYNIMI 550
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 102/471 (21%), Positives = 195/471 (41%), Gaps = 61/471 (12%)
Query: 68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD 127
+I RK +ALE M G+ H + + G+L + + LK
Sbjct: 380 LIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTI-------IQGWLKGQKHEEALKLF 432
Query: 128 EKTYQTYGALLNCYV---------RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK 178
+++++T L N +V +Q +TD+A KM+ GI + ++YN++M + +
Sbjct: 433 DESFET--GLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCR 490
Query: 179 TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWS 238
+ V + + K + P+N++Y I I+ D + ++ M S +I ++
Sbjct: 491 QKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSS-NIEVNGV 549
Query: 239 TYASAAHFYIKANLIDKASDVLKKA-EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDL 297
Y + + K KA ++L EE+ + YN +I + G + ++
Sbjct: 550 VYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYE- 608
Query: 298 EKTACKRYINRDYIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN 354
C I+ + IT ++ L K ++A ++ E + G D A+I G+C
Sbjct: 609 --EMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCK 666
Query: 355 NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT-----------ERGFQC---- 399
+++A A+ +L+E+G + + + +G+ + G + G +C
Sbjct: 667 RSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGT 726
Query: 400 ---------------MKAALSVYVEGKGWKPDPKVITSILSKLGDEGS-VQDVEAFVAAL 443
+ + L ++ G PD + T I++ L +G V+ V+ F
Sbjct: 727 YTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMK 786
Query: 444 RTVIPMNRQMYHAFIKANIRNGKGVDE---LLDSMKADGIDEDEETKEILV 491
+ + N +Y+A I + R G +DE L D M GI D T +ILV
Sbjct: 787 KNNVTPNVLIYNAVIAGHYREGN-LDEAFRLHDEMLDKGILPDGATFDILV 836
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 140/324 (43%), Gaps = 24/324 (7%)
Query: 122 SNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKM-KEMGIALSTLTYNDIMCLYSKTG 180
SN++ + YQT ++N + QT KA M +E + +S ++YN I+ + K G
Sbjct: 542 SNIEVNGVVYQT---IINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEG 598
Query: 181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTY 240
+ + EM I P+ +Y +N + ++ + EM+++ + LD Y
Sbjct: 599 EMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNK-GVKLDIPAY 657
Query: 241 ASAAHFYIKANLIDKASDVLKKA-EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEK 299
+ + K + ++ AS + + EE L I YN LIS + +LGN L DL K
Sbjct: 658 GALIDGFCKRSNMESASALFSELLEEGLNPSQPI-YNSLISGFRNLGNMVAAL---DLYK 713
Query: 300 TACKRYINRD---YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG 356
K + D Y T+++ L+K G A ++ E + G D I ++ G G
Sbjct: 714 KMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKG 773
Query: 357 LVQNAEAILEDLVEKGKATTPNS--WAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK 414
+ E++ K TPN + V AG++ G + F+ L KG
Sbjct: 774 QFVKVVKMFEEM--KKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLD-----KGIL 826
Query: 415 PDPKVITSILSKLGDEGSVQDVEA 438
PD ++S G G++Q V A
Sbjct: 827 PDGATFDILVS--GQVGNLQPVRA 848
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 131/304 (43%), Gaps = 30/304 (9%)
Query: 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK 195
+L+ + + AL F KM++ G + +++T++ ++ + K G+ EK + +M+
Sbjct: 344 SLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVL 403
Query: 196 NIFPDNFSYRICINSY--GARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI 253
+ P F I + G + + E +++ E+ V +T S + K
Sbjct: 404 GLTPSVFHVHTIIQGWLKGQKHE-EALKLFDESFETGLANVFVCNTILS---WLCKQGKT 459
Query: 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI------- 306
D+A+++L K E R GIG N + LG+ + + DL + +
Sbjct: 460 DEATELLSKMESR-----GIGPNVVSYNNVMLGHCRQ--KNMDLARIVFSNILEKGLKPN 512
Query: 307 NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILE 366
N Y +++ + + + A +V+ S + + +I G C G A +L
Sbjct: 513 NYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLA 572
Query: 367 DLVEKGK-ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVE--GKGWKPDPKVITSI 423
+++E+ + + S+ + G+F G+ M +A++ Y E G G P+ TS+
Sbjct: 573 NMIEEKRLCVSCMSYNSIIDGFFKEGE-------MDSAVAAYEEMCGNGISPNVITYTSL 625
Query: 424 LSKL 427
++ L
Sbjct: 626 MNGL 629
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 119/304 (39%), Gaps = 51/304 (16%)
Query: 117 AESYFSNLKDDEKTY------QTYGALLNCYVRQRQTDKALSHFRKMKEMGI-------- 162
A S L D K++ + + LLN Y + RQTD A+ +M E+ +
Sbjct: 143 ASVLVSKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVN 202
Query: 163 -ALSTLTYNDIMC----LYSK-----------TGQY-------EKVP----DVLTEMKAK 195
LS L + + LYS+ T Q E+ P +VL+ +
Sbjct: 203 RTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIER 262
Query: 196 NIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK 255
PD+ Y + + + DL +LREM+ + V TY S +K +D
Sbjct: 263 GAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMD- 321
Query: 256 ASDVLKKAEERLEQKDGIGYNF-----LISLYASLGNKSEVLRLWDLEKTACKRYINRDY 310
D ++ +E L DGI N LI+ + + L L+D + + +
Sbjct: 322 --DAIRLKDEML--SDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTF 377
Query: 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE 370
++E K GE E+A + K+ E+ G + + +I G+ + A + ++ E
Sbjct: 378 SVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFE 437
Query: 371 KGKA 374
G A
Sbjct: 438 TGLA 441
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 1/269 (0%)
Query: 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189
T + Y +L++ Y R D+ALS RKMKE GI +S +TY+ I+ +SK G E
Sbjct: 343 TSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWF 402
Query: 190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249
E K + + Y I ++ ++E E ++REME + I + Y + Y
Sbjct: 403 DEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEG-IDAPIAIYHTMMDGYTM 461
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309
K V K+ +E + Y LI+LY +G S+ L + + K ++ +
Sbjct: 462 VADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKT 521
Query: 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369
Y M+ +KL + A V ++ G D + N +I +C G + A ++++
Sbjct: 522 YSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQ 581
Query: 370 EKGKATTPNSWAVVAAGYFDAGKTERGFQ 398
+ T ++ + GY +G R +
Sbjct: 582 KLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 23/226 (10%)
Query: 68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKD- 126
II K ++LEV D M R G CV P H G ++G + ++
Sbjct: 595 IIHGYAKSGDMRRSLEVFDMMRRCG-CV--PTVHTFN----GLINGLVEKRQMEKAVEIL 647
Query: 127 DEKTY-------QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT 179
DE T TY ++ Y T KA +F +++ G+ + TY ++ K+
Sbjct: 648 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKS 707
Query: 180 GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWST 239
G+ + V EM A+NI ++F Y I I+ + R D+ ++++M+ + + D T
Sbjct: 708 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEG-VKPDIHT 766
Query: 240 YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASL 285
Y S +I A KA D + +A + +E+ + +G I Y +L
Sbjct: 767 YTS----FISA--CSKAGD-MNRATQTIEEMEALGVKPNIKTYTTL 805
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/349 (16%), Positives = 129/349 (36%), Gaps = 42/349 (12%)
Query: 175 LYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQP--- 231
Y + G + + M+A+ I P + Y I++Y D++ +R+M+ +
Sbjct: 318 FYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEM 377
Query: 232 -------------------------------HIVLDWSTYASAAHFYIKANLIDKASDVL 260
H L+ S Y + + + +++A ++
Sbjct: 378 SLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALV 437
Query: 261 KKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL 320
++ EE Y+ ++ Y + ++ + L ++ K Y ++ K+
Sbjct: 438 REMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKV 497
Query: 321 GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW 380
G+ +A +V + + G ++ + + +I G+ NA A+ ED+V++G +
Sbjct: 498 GKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILY 557
Query: 381 AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV-QDVEAF 439
+ + + G +R Q +K + +P + I+ G + + +E F
Sbjct: 558 NNIISAFCGMGNMDRAIQTVKEMQKLR-----HRPTTRTFMPIIHGYAKSGDMRRSLEVF 612
Query: 440 VAALRTVIPMNRQMYHAFIKANI--RNGKGVDELLDSMKADGIDEDEET 486
R ++ I + R + E+LD M G+ +E T
Sbjct: 613 DMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHT 661
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191
TY + ++ + ++A +M+ +G+ + TY ++ +++ EK E
Sbjct: 765 HTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEE 824
Query: 192 MKAKNIFPDNFSYRICINSYGARSDL------EGMEIILREMESQPHIVLDWST 239
MKA I PD Y + S +R+ + G+ I +EM + +++D T
Sbjct: 825 MKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEM-VEAGLIVDMGT 877
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
Y L++ + R+ +A ++MK+ G+ TY + SK G + + EM+
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 194 AKNIFPDNFSYRICINSYGARSDL 217
A + P+ +Y I + AR+ L
Sbjct: 792 ALGVKPNIKTYTTLIKGW-ARASL 814
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 11/371 (2%)
Query: 68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD 127
I+R L + QA+EV D M ++ C + + ++ R G A ++D
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRD-CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR 268
Query: 128 EKTYQ--TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV 185
T TY L+N ++ + D+A+ M G + +T+N I+ TG++
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328
Query: 186 PDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAH 245
+L +M K P ++ I IN + R L G I + E Q + +Y H
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILIN-FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387
Query: 246 FYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD-LEKTACKR 304
+ K +D+A + L++ R D + YN +++ G + + + + L C
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447
Query: 305 YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAI 364
+ Y T+++ L K G+ +A K+L E DT ++++ G G V A
Sbjct: 448 VL-ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKF 506
Query: 365 LEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL 424
+ G ++ + G + +T+R + V++ +G KP+ T ++
Sbjct: 507 FHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFL-----VFMINRGCKPNETSYTILI 561
Query: 425 SKLGDEGSVQD 435
L EG ++
Sbjct: 562 EGLAYEGMAKE 572
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 158/385 (41%), Gaps = 24/385 (6%)
Query: 114 FLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM 173
FL Y N+ D L+ + R +T KA ++ G +TYN ++
Sbjct: 124 FLENMVYHGNVPD----IIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMI 179
Query: 174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL-EGMEIILREMESQPH 232
Y K G+ VL M ++ PD +Y + S L + ME++ R ++ +
Sbjct: 180 SGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCY 236
Query: 233 IVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL 292
D TY + + + A +L + +R D + YN L++ G E +
Sbjct: 237 P--DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294
Query: 293 R-LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351
+ L D+ + C+ + I +L ++ G +AEK+L + G S N +I
Sbjct: 295 KFLNDMPSSGCQPNVITHNI-ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353
Query: 352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK 411
C GL+ A ILE + + G S+ + G+ K +R + ++ +S +
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS-----R 408
Query: 412 GWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-----VIPMNRQMYHAFIKANIRNGK 466
G PD ++L+ L +G V+D + L + V+ + KA + GK
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG-KTGK 467
Query: 467 GVDELLDSMKADGIDEDEETKEILV 491
+ +LLD M+A + D T LV
Sbjct: 468 AI-KLLDEMRAKDLKPDTITYSSLV 491
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 13/182 (7%)
Query: 314 LEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 373
L +++ GE EE K L+ GN D +I G+C G + A ILE L G
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV 433
++ V+ +GY AG+ + ALSV ++ PD +IL L D G +
Sbjct: 169 VPDVITYNVMISGYCKAGE-------INNALSV-LDRMSVSPDVVTYNTILRSLCDSGKL 220
Query: 434 -QDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVD---ELLDSMKADGIDEDEETKEI 489
Q +E L+ + Y I+A R+ GV +LLD M+ G D T +
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRD-SGVGHAMKLLDEMRDRGCTPDVVTYNV 279
Query: 490 LV 491
LV
Sbjct: 280 LV 281
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 24/233 (10%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
+Y LL+ + ++++ D+A+ + +M G +TYN ++ K G+ E ++L ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEI-ILREMESQPHIVLDWSTYASAAHFYIKAN 251
+K P +Y I+ A++ G I +L EM ++ + D TY+S +
Sbjct: 441 SSKGCSPVLITYNTVIDGL-AKAGKTGKAIKLLDEMRAK-DLKPDTITYSSLVGGLSREG 498
Query: 252 LIDKASDVLKKAEERLEQKDGIGYN-FLISLYASLGNKSEVLRLWDLEKTACKRYINRDY 310
+D+A + E + + + +N ++ L S + L + CK Y
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPN-ETSY 557
Query: 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEA 363
++E L G +EA ++L E CN GL++ + A
Sbjct: 558 TILIEGLAYEGMAKEALELLNEL-------------------CNKGLMKKSSA 591
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/365 (20%), Positives = 153/365 (41%), Gaps = 9/365 (2%)
Query: 109 GRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLT 168
GRV L+ SN T+ L+N + A+ M + G T
Sbjct: 273 GRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332
Query: 169 YNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME 228
YN ++ K G+ ++ +VL +M ++ P+ +Y I++ + +E + R +
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 229 SQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK 288
S+ I+ D T+ S A ++ ++ + + D YN LI S G
Sbjct: 393 SK-GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451
Query: 289 SEVLR-LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNA 347
E L L +E + C R + Y T+++ K + EAE++ E E+ G S ++ N
Sbjct: 452 DEALNMLKQMELSGCARSV-ITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY 407
+I G C + V++A +++ ++ +G+ ++ + + G ++ ++A S
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTS-- 568
Query: 408 VEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV-IPMNRQMYHAFIKANIRNGK 466
G +PD +++S L G V+ + +++ I + Y+ I+ R K
Sbjct: 569 ---NGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRK 625
Query: 467 GVDEL 471
+ +
Sbjct: 626 TTEAI 630
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 1/280 (0%)
Query: 125 KDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEK 184
+D TY L++ ++ Q ++A R + GI T+N ++ T +
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418
Query: 185 VPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAA 244
++ EM++K PD F+Y + I+S ++ L+ +L++ME TY +
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVITYNTLI 477
Query: 245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR 304
+ KAN +A ++ + E ++ + YN LI + +L D ++
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537
Query: 305 YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAI 364
Y ++L + G+ ++A +++ +G D +I G C G V+ A +
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597
Query: 365 LEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404
L + KG TP+++ V G F KT + L
Sbjct: 598 LRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREML 637
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/360 (20%), Positives = 140/360 (38%), Gaps = 41/360 (11%)
Query: 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210
+SH KM GI T+N ++ + Q +L +M + + PD ++ +
Sbjct: 175 ISH-AKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQG 233
Query: 211 YGARSDLEGMEIILREMESQPHIVLDWSTYA--SAAHFYIKANLIDKASDVLKKAEERLE 268
Y DL+G LR E WS + H + K ++ A + +++ +
Sbjct: 234 YIEEGDLDGA---LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE----MS 286
Query: 269 QKDGI-----GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH 323
+DG +N L++ G+ + + D+ Y +++ L KLGE
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV 346
Query: 324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVV 383
+EA +VL + S +T N +I C V+ A + L KG ++ +
Sbjct: 347 KEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406
Query: 384 AAGYFDAGKTERGFQCM----KAALSVYVE--GKGWKPDPKVITSILSKLGDEGSVQDVE 437
G C+ + A+ ++ E KG +PD ++ L +G + +
Sbjct: 407 IQGL-----------CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455
Query: 438 AFVAAL------RTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILV 491
+ + R+VI N + F KAN + +E+ D M+ G+ + T L+
Sbjct: 456 NMLKQMELSGCARSVITYN-TLIDGFCKAN--KTREAEEIFDEMEVHGVSRNSVTYNTLI 512
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/280 (18%), Positives = 119/280 (42%), Gaps = 30/280 (10%)
Query: 169 YNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME 228
Y +I+ ++G ++ + +L +MK+ ++ I I SY E++
Sbjct: 86 YEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQ-----------FELQ 134
Query: 229 SQPHIVLDWST----YASAAHFYIKA--NLIDKAS-DVLKKAEERLE----QKDGIGYNF 277
+ V+DW HFY + L+D S +++ + ++ + D +N
Sbjct: 135 DEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNV 194
Query: 278 LI-SLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS 336
LI +L + + +L L D+ + + T+++ ++ G+ + A ++ ++
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPD-EKTFTTVMQGYIEEGDLDGALRIREQMVEF 253
Query: 337 GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV-EKGKATTPNSWAVVAAGYFDAGKTER 395
G S+ N ++ G+C G V++A ++++ + G ++ + G AG +
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313
Query: 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD 435
+ M L +G+ PD S++S L G V++
Sbjct: 314 AIEIMDVMLQ-----EGYDPDVYTYNSVISGLCKLGEVKE 348
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 156/370 (42%), Gaps = 24/370 (6%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM---CLYSKTGQYEKVPDVL 189
T+ ++N + + +KA MK G + + ++YN ++ C G+ K VL
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVL 284
Query: 190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQ---PHIVLDWSTYASAAHF 246
EM ++ P+ ++ I I+ + +L G + +EM Q P+++ +Y S +
Sbjct: 285 KEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVI----SYNSLING 340
Query: 247 YIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI 306
I +A + K Q + I YN LI+ + E L ++ K
Sbjct: 341 LCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPT 400
Query: 307 NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILE 366
R Y +++A KLG+ ++ + +E E G D N +I G C NG ++ A+ + +
Sbjct: 401 TRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD 460
Query: 367 DLVEKGKATTPN--SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL 424
L KG P+ ++ ++ GY G++ + +K + G KP ++
Sbjct: 461 QLTSKG---LPDLVTFHILMEGYCRKGESRKAAMLLKE-----MSKMGLKPRHLTYNIVM 512
Query: 425 SKLGDEGSVQDVEAFVAALRT--VIPMNRQMYHAFIKANIRNGKGVDE--LLDSMKADGI 480
EG+++ + + MN Y+ ++ + GK D LL+ M G+
Sbjct: 513 KGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGL 572
Query: 481 DEDEETKEIL 490
+ T EI+
Sbjct: 573 VPNRITYEIV 582
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 106/259 (40%), Gaps = 36/259 (13%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY AL+N + + +AL F +K G +T YN ++ Y K G+ + + EM
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
+ + I PD +Y I ++E + + ++ S+ + D T+ Y +
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG--LPDLVTFHILMEGYCRKGE 485
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT 312
KA+ +LK+ + + + YN ++ Y GN
Sbjct: 486 SRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGN------------------------- 520
Query: 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
L+A + E E+ L+ ++ SY N ++ GY G +++A +L +++EKG
Sbjct: 521 -LKAATNMRTQMEKERRLR---MNVASY-----NVLLQGYSQKGKLEDANMLLNEMLEKG 571
Query: 373 KATTPNSWAVVAAGYFDAG 391
++ +V D G
Sbjct: 572 LVPNRITYEIVKEEMVDQG 590
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/394 (21%), Positives = 164/394 (41%), Gaps = 48/394 (12%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TYGA++N ++ + D AL+ KM++ I + Y+ ++ K + ++ TEM
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266
Query: 193 KAKNIFPDNFSYR---ICINSYGARSDLEGMEIILREMESQPHIVL-------------- 235
K I PD F+Y C+ +YG SD + + E + P++V
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326
Query: 236 -----------------DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL 278
+ TY S + + + +D+A + + D + YN L
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386
Query: 279 ISLYASLGNKSEVLRLWDLEKTACKRYI---NRDYITMLEALMKLGEHEEAEKVLKEWEL 335
I+ + +V+ +L + +R + Y T++ + + + A+ V K+
Sbjct: 387 INGFC---KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVS 443
Query: 336 SGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395
G + N ++ G C NG ++ A + E L + ++ +++ G AGK E
Sbjct: 444 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503
Query: 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM-NRQMY 454
G+ + +LS+ KG KPD +++S +G ++ ++ P+ + Y
Sbjct: 504 GWD-LFCSLSL----KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558
Query: 455 HAFIKANIRNG--KGVDELLDSMKADGIDEDEET 486
+ I+A++R+G EL+ M++ D T
Sbjct: 559 NTLIRAHLRDGDKAASAELIKEMRSCRFAGDAST 592
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 123/309 (39%), Gaps = 46/309 (14%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM-------------CLYSKT 179
TY ++NC R+ Q AL+ KM ++G S +T N ++ L +
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
Query: 180 GQYEKVPDVLT----------------------EMKAKNIFPDNFSYRICINSYGARSDL 217
+ PD +T M K PD +Y IN R +
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221
Query: 218 EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNF 277
+ +L +ME + I D Y++ K +D A ++ + + + + D Y+
Sbjct: 222 DLALNLLNKME-KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280
Query: 278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT---MLEALMKLGEHEEAEKVLKEWE 334
LIS + G S+ RL +R IN + +T +++A K G+ EAEK+ E
Sbjct: 281 LISCLCNYGRWSDASRLL---SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD--E 335
Query: 335 LSGNSYDTRIP--NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK 392
+ S D I N++I G+C + + A+ I +V K ++ + G+ A K
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395
Query: 393 TERGFQCMK 401
G + +
Sbjct: 396 VVDGMELFR 404
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 127/301 (42%), Gaps = 39/301 (12%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
T+ +L++ + ++ + +A F +M + I + +TYN ++ + + ++ + T M
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 371
Query: 193 KAKNIFPDNFSYRICINSYG-ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251
+K+ PD +Y IN + A+ ++GME+ R+M S+ +V + TY + H + +A+
Sbjct: 372 VSKDCLPDVVTYNTLINGFCKAKKVVDGMEL-FRDM-SRRGLVGNTVTYTTLIHGFFQAS 429
Query: 252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL----------------- 294
D A V K+ + + YN L+ G + + +
Sbjct: 430 DCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYN 489
Query: 295 ---------------WDLEKTACKRYINRDYI---TMLEALMKLGEHEEAEKVLKEWELS 336
WDL + + + D I TM+ K G EEA + + +
Sbjct: 490 IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED 549
Query: 337 GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERG 396
G D+ N +I + +G + +++++ A +++ +V D G+ ++G
Sbjct: 550 GPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHD-GRLDKG 608
Query: 397 F 397
F
Sbjct: 609 F 609
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 15/245 (6%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
+ LL+ + ++ D +S KM+ +G++ + TYN ++ + Q +L +M
Sbjct: 68 FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMM 127
Query: 194 AKNIFPDNFSYRICINSY--GAR-SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA 250
P + +N + G R S+ + + EM QP D T+ + H +
Sbjct: 128 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP----DTVTFTTLVHGLFQH 183
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD-LEKTACKRYINRD 309
N +A ++++ + Q D + Y +I+ G L L + +EK I D
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGK----IEAD 239
Query: 310 ---YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILE 366
Y T++++L K ++A + E + G D +++I CN G +A +L
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 299
Query: 367 DLVEK 371
D++E+
Sbjct: 300 DMLER 304
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 155/371 (41%), Gaps = 46/371 (12%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TYG ++N ++ TD AL+ KM+ I + +N I+ K + ++ EM
Sbjct: 227 TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 286
Query: 193 KAKNIFPDNFSYR---ICINSYGARSDLEGMEIILREMESQPHIVL-------------- 235
+ K I P+ +Y C+ SYG SD + + E + P++V
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 346
Query: 236 -----------------DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL 278
D TY S + + + +DKA + + + D + YN L
Sbjct: 347 VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRD---YITMLEALMKLGEHEEAEKVLKEWEL 335
I + V +L + R + D Y T+++ L G+ + A+KV K+
Sbjct: 407 IKGFC---KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 463
Query: 336 SGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395
G D + ++ G CNNG ++ A + + + + + + G AGK +
Sbjct: 464 DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 523
Query: 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM-NRQMY 454
G+ + +LS+ KG KP+ +++S L + +Q+ A + ++ P+ N Y
Sbjct: 524 GWD-LFCSLSL----KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 578
Query: 455 HAFIKANIRNG 465
+ I+A++R+G
Sbjct: 579 NTLIRAHLRDG 589
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 149/346 (43%), Gaps = 19/346 (5%)
Query: 128 EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI---MCLYSKTGQYEK 184
E + T +LLN Y ++ A++ +M EMG T+T+ + + L++K +
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 185 VPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAA 244
+ D M + P+ +Y + +N R D + +L +ME+ I D + +
Sbjct: 212 LVD---RMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIFNTII 267
Query: 245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR 304
K +D A ++ K+ E + + + + Y+ LIS S G S+ +L ++
Sbjct: 268 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL---SDMIEK 324
Query: 305 YINRDYIT---MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA 361
IN + +T +++A +K G+ EAEK+ + D N+++ G+C + + A
Sbjct: 325 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 384
Query: 362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT 421
+ + E +V K ++ + G+ + + E G + + + +G D T
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFRE-----MSHRGLVGDTVTYT 439
Query: 422 SILSKLGDEGSVQDVE-AFVAALRTVIPMNRQMYHAFIKANIRNGK 466
+++ L +G + + F + +P + Y + NGK
Sbjct: 440 TLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 485
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 104/244 (42%), Gaps = 13/244 (5%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
+ LL+ + ++ D +S KM+ + I TYN ++ + + Q +L +M
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 194 AKNIFPDNFSYRICINSY--GAR-SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA 250
P + +N Y G R SD + + EM +P D T+ + H
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP----DTITFTTLIHGLFLH 203
Query: 251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY 310
N +A ++ + +R Q + + Y +++ G+ L L + + A I D
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAA---KIEADV 260
Query: 311 I---TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
+ T++++L K ++A + KE E G + +++I C+ G +A +L D
Sbjct: 261 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320
Query: 368 LVEK 371
++EK
Sbjct: 321 MIEK 324
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 146/343 (42%), Gaps = 12/343 (3%)
Query: 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189
+ Y L+ + +D L+ F++M+E+G + + ++ ++K G+ + +L
Sbjct: 167 AFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLL 226
Query: 190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249
EMK+ ++ D Y +CI+S+G ++ E+E+ + D TY S K
Sbjct: 227 DEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCK 285
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR- 308
AN +D+A ++ + E+ YN +I Y S G E L LE+ K I
Sbjct: 286 ANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSL--LERQRAKGSIPSV 343
Query: 309 -DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
Y +L L K+G+ +EA KV +E + + + N +I C G + A + +
Sbjct: 344 IAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDS 402
Query: 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427
+ + G + ++ + K + A+ ++ K PD S++ L
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEA-----CAMFEEMDYKVCTPDEITFCSLIDGL 457
Query: 428 GDEGSVQDV-EAFVAALRTVIPMNRQMYHAFIKANIRNGKGVD 469
G G V D + + L + N +Y + IK +G+ D
Sbjct: 458 GKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKED 500
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 93/453 (20%), Positives = 184/453 (40%), Gaps = 45/453 (9%)
Query: 68 IIRDLRKRKRFSQALEVSDWM--NRKGICVFAPCDHAVQLDLIGRVHGFLSAESYF---- 121
+I L K R +A+E+ + + NR+ PC +A ++G E+Y
Sbjct: 279 MIGVLCKANRLDEAVEMFEHLEKNRR-----VPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Query: 122 SNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ 181
K + Y +L C + + D+AL F +MK+ A + TYN ++ + + G+
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGK 392
Query: 182 YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYA 241
+ ++ M+ +FP+ + I ++ L+ + EM+ + D T+
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV-CTPDEITFC 451
Query: 242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW-DLEKT 300
S K +D A V +K + + + I Y LI + + G K + +++ D+
Sbjct: 452 SLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ 511
Query: 301 ACK---RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL 357
C + +N T ++ + K GE E+ + +E + D R + +I G G
Sbjct: 512 NCSPDLQLLN----TYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGF 567
Query: 358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP 417
+ + E+G ++ +V G+ GK + +Q ++ ++ KG++P
Sbjct: 568 ANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE-----MKTKGFEPTV 622
Query: 418 KVITSILSKLGDEGSVQDVEA-FVAALRTVIPMNRQMYHAFIKANIRNGKGVDE---LLD 473
S++ L + + F A I +N +Y + I + G+ +DE +L+
Sbjct: 623 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR-IDEAYLILE 681
Query: 474 SMKADGIDED--------------EETKEILVC 492
+ G+ + EE E LVC
Sbjct: 682 ELMQKGLTPNLYTWNSLLDALVKAEEINEALVC 714
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 106/276 (38%), Gaps = 36/276 (13%)
Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191
++Y L++ ++ ++ F MKE G L T YN ++ + K G+ K +L E
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 192 MKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251
MK K P +Y I+ L+ ++ E +S+ I L+ Y+S + K
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK-RIELNVVIYSSLIDGFGKVG 671
Query: 252 LIDKAS----------------------DVLKKAEERLE-------------QKDGIGYN 276
ID+A D L KAEE E + + Y
Sbjct: 672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731
Query: 277 FLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS 336
LI+ + ++ W + + Y TM+ L K G EA + ++ +
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791
Query: 337 GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
G D+ NA+I G N +A ++ E+ +G
Sbjct: 792 GGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRG 827
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/405 (18%), Positives = 155/405 (38%), Gaps = 51/405 (12%)
Query: 128 EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187
E T + L+ + ++ + D ALS +MK + + YN + + K G+ +
Sbjct: 200 EPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWK 259
Query: 188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFY 247
E++A + PD +Y I + L+ + +E + ++ Y + Y
Sbjct: 260 FFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYA-YNTMIMGY 318
Query: 248 IKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW-DLEKTACKRYI 306
A D+A +L++ + I YN +++ +G E L+++ +++K A
Sbjct: 319 GSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNL- 377
Query: 307 NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI----------------- 349
Y +++ L + G+ + A ++ + +G + R N ++
Sbjct: 378 -STYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFE 436
Query: 350 -----------IGYCN-------NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391
I +C+ G V +A + E +++ T + + +F+ G
Sbjct: 437 EMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHG 496
Query: 392 KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL--RTVIPM 449
+ E G + K ++ + PD +++ + + + G + A + R +P
Sbjct: 497 RKEDGHKIYKDMIN-----QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPD 551
Query: 450 NRQ---MYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILV 491
R + H IKA N EL SMK G D I++
Sbjct: 552 ARSYSILIHGLIKAGFAN--ETYELFYSMKEQGCVLDTRAYNIVI 594
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/400 (18%), Positives = 160/400 (40%), Gaps = 40/400 (10%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
T+ +L++ + + D A + KM + +++ Y ++ + G+ E + +M
Sbjct: 449 TFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDM 508
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
+N PD ++ + E + E++++ V D +Y+ H IKA
Sbjct: 509 INQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKAR-RFVPDARSYSILIHGLIKAGF 567
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT 312
++ ++ +E+ D YN +I + G ++ +L + KT Y +
Sbjct: 568 ANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627
Query: 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372
+++ L K+ +EA + +E + + I +++I G+ G + A ILE+L++KG
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687
Query: 373 KATTPN--SWAVVAAGYFDAGKTERGFQCMKA-----------ALSVYVEG--------- 410
TPN +W + A + C ++ + + G
Sbjct: 688 --LTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNK 745
Query: 411 ----------KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT--VIPMNRQMYHAFI 458
+G KP T+++S L G++ + A + +P + Y+A I
Sbjct: 746 AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVP-DSACYNAMI 804
Query: 459 KANIRNGKGVD--ELLDSMKADGIDEDEETKEILVCTMEK 496
+ + +D L + + G+ +T +L+ T+ K
Sbjct: 805 EGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHK 844
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/438 (23%), Positives = 173/438 (39%), Gaps = 32/438 (7%)
Query: 62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYF 121
+ + R++ + K K++ + + + M GI C + L+ R A S+
Sbjct: 81 IADFSRLLSAISKMKKYDVVIYLWEQMQMLGI-PHNLCTCNILLNCFCRCSQLSLALSFL 139
Query: 122 SNL--KDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT 179
+ E + T+G+LLN + R + AL F +M MG + + YN I+ K+
Sbjct: 140 GKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKS 199
Query: 180 GQYEKVPDVLTEMKAKNIFPDNFSYRICIN---SYGARSDLEGMEIILREMESQPHIVLD 236
Q + D+L M+ I PD +Y I+ S G SD M + + E P D
Sbjct: 200 KQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYP----D 255
Query: 237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLI---SLYASLGNKSEVLR 293
T+ + +K + +A + ++ R D + Y+ LI +Y+ L E+
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFG 315
Query: 294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC 353
+ K + Y ++ K + E K+ E G +T +I GYC
Sbjct: 316 FM-VSKGCFPDVVT--YSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYC 372
Query: 354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW 413
G + AE I +V G ++ V+ G D GK E+ AL + + +
Sbjct: 373 RAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEK-------ALVILADMQKN 425
Query: 414 KPDPKVITS--ILSKLGDEGSVQDVEAFVAAL--RTVIP---MNRQMYHAFIKANIRNGK 466
D ++T I+ + G V D +L + ++P M K +R +
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLR--R 483
Query: 467 GVDELLDSMKADGIDEDE 484
D L MK DGI +E
Sbjct: 484 EADALFRKMKEDGILPNE 501
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/288 (19%), Positives = 113/288 (39%), Gaps = 54/288 (18%)
Query: 50 LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG 109
+D VK G RV E + ++ +R + S + G+C+++ D A ++
Sbjct: 263 IDACVKEG---RVSEAEEFYEEMIRRSLDPDIVTYSLLI--YGLCMYSRLDEAEEM---- 313
Query: 110 RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY 169
GF+ ++ F ++ TY L+N Y + ++ + + F +M + G+ +T+TY
Sbjct: 314 --FGFMVSKGCFPDV-------VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364
Query: 170 NDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES 229
++ Y + G+ ++ M + P+ +Y + ++ +E +IL +M+
Sbjct: 365 TILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424
Query: 230 QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS 289
+ D TY KA + A D+ Y SL +
Sbjct: 425 NG-MDADIVTYNIIIRGMCKAGEVADAWDI----------------------YCSLNCQG 461
Query: 290 EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSG 337
+ +W Y TM+ L K G EA+ + ++ + G
Sbjct: 462 LMPDIW-------------TYTTMMLGLYKKGLRREADALFRKMKEDG 496
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 146/357 (40%), Gaps = 15/357 (4%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
TY L++ Y + ++A M G + TYN ++ K G+YE+ +V EM
Sbjct: 272 TYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEM 331
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
+ PD+ +YR + + D+ E + +M S+ +V D ++S + ++
Sbjct: 332 LRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSR-DVVPDLVCFSSMMSLFTRSGN 390
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW-DLEKTACKRYINRDYI 311
+DKA +E D + Y LI Y G S + L ++ + C + Y
Sbjct: 391 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDV-VTYN 449
Query: 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK 371
T+L L K EA+K+ E D+ +I G+C G +QNA + + + EK
Sbjct: 450 TILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEK 509
Query: 372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG 431
++ + G+ G + + +S K P P + +++ L +G
Sbjct: 510 RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS-----KEILPTPISYSILVNALCSKG 564
Query: 432 SVQDVEAFVA---ALRTVIPMNRQMYHAFIKANIRNGKGVD--ELLDSMKADGIDED 483
+ EAF + I + ++ IK R+G D L+ M ++G D
Sbjct: 565 HL--AEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPD 619
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 130/322 (40%), Gaps = 43/322 (13%)
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK 193
Y L+ Y R+ A++ +M + G A+ +TYN I+ K + + EM
Sbjct: 413 YTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMT 472
Query: 194 AKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI 253
+ +FPD+++ I I+ + +L+ + ++M+ + I LD TY + + K I
Sbjct: 473 ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMK-EKRIRLDVVTYNTLLDGFGKVGDI 531
Query: 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD----------------- 296
D A ++ + I Y+ L++ S G+ +E R+WD
Sbjct: 532 DTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSM 591
Query: 297 ----------------LEKTACKRYINR--DYITMLEALMKLGEHEEAEKVLK--EWELS 336
LEK + ++ Y T++ ++ +A ++K E E
Sbjct: 592 IKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQG 651
Query: 337 GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERG 396
G D N+++ G+C ++ AE +L ++E+G +++ + G+
Sbjct: 652 GLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711
Query: 397 FQCMKAALSVYVEGKGWKPDPK 418
F+ L +G+ PD K
Sbjct: 712 FRIHDEMLQ-----RGFSPDDK 728
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 112/257 (43%), Gaps = 13/257 (5%)
Query: 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK 195
AL+ VR + A ++++ G+ ++ T N ++ K G+ EKV L++++ K
Sbjct: 205 ALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEK 264
Query: 196 NIFPDNFSYRICINSYGARSDLEGMEIILREMESQ---PHIVLDWSTYASAAHFYIKANL 252
++PD +Y I++Y ++ +E ++ M + P + TY + + K
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVY----TYNTVINGLCKHGK 320
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI- 311
++A +V + D Y L+ G+ E +++ ++ R + D +
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS---RDVVPDLVC 377
Query: 312 --TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369
+M+ + G ++A + +G D I +I GYC G++ A + +++
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEML 437
Query: 370 EKGKATTPNSWAVVAAG 386
++G A ++ + G
Sbjct: 438 QQGCAMDVVTYNTILHG 454
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 131/314 (41%), Gaps = 34/314 (10%)
Query: 128 EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187
E Y +++ + Q + AL + MK+MGI +TYN ++ +G +
Sbjct: 181 EPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSAR 240
Query: 188 VLTEMKAKNIFPDNFSYRICINSYGARSDL-----EGMEIILREMESQPHIVLDWSTYAS 242
+L++M I PD ++ I+ YG L + E+I R + P+IV TY S
Sbjct: 241 ILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSV--NPNIV----TYNS 294
Query: 243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC 302
+ L+D+A VL + + + YN LI+ Y + R+ D K C
Sbjct: 295 LINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYC------KAKRVDDGMKILC 348
Query: 303 KRYINRD--------YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN 354
++RD Y T+ + + G+ AEKVL G D N ++ G C+
Sbjct: 349 --VMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCD 406
Query: 355 NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK 414
+G + A LEDL + ++ ++ G A K E + L + KG
Sbjct: 407 HGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWY-----LFCSLALKGVS 461
Query: 415 PDPKVITSILSKLG 428
PD VIT I +G
Sbjct: 462 PD--VITYITMMIG 473
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 135/339 (39%), Gaps = 14/339 (4%)
Query: 100 DHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYG--ALLNCYVRQRQTDKALSHFRKM 157
D + L I +++ + + S F +L+ ++ Y L++C+ R + ALS KM
Sbjct: 81 DFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKM 140
Query: 158 KEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL 217
++G S +T+ ++ + ++ + ++ ++ P+ Y I+S + +
Sbjct: 141 MKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQV 200
Query: 218 EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNF 277
+L+ M+ I D TY S + ++ +L D I ++
Sbjct: 201 NTALDVLKHMKKMG-IRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSA 259
Query: 278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT---MLEALMKLGEHEEAEKVLKEWE 334
LI +Y G E + ++ +R +N + +T ++ L G +EA+KVL
Sbjct: 260 LIDVYGKEGQLLEAKKQYN---EMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLV 316
Query: 335 LSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394
G + N +I GYC V + IL + G ++ + GY AGK
Sbjct: 317 SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFS 376
Query: 395 RGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV 433
+ + +S G PD +L L D G +
Sbjct: 377 AAEKVLGRMVSC-----GVHPDMYTFNILLDGLCDHGKI 410
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 99 CDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMK 158
C H + LD +V L ++ +F N TY L+N Y + ++ D + M
Sbjct: 300 CIHGL-LDEAKKVLNVLVSKGFFPN-------AVTYNTLINGYCKAKRVDDGMKILCVMS 351
Query: 159 EMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209
G+ T TYN + Y + G++ VL M + + PD +++ I ++
Sbjct: 352 RDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLD 402
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 102/488 (20%), Positives = 185/488 (37%), Gaps = 120/488 (24%)
Query: 68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAP----CDHAVQLDLIGRVHGFLSAESYFSN 123
++R + + +A+E M KG F P C+H L L+ R++ +A ++++
Sbjct: 161 LVRCCCQLRMVDEAIECFYLMKEKG---FYPKTETCNHI--LTLLSRLNRIENAWVFYAD 215
Query: 124 LKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ 181
+ E T+ ++N ++ + KA M+ GI + +TYN ++ +S G+
Sbjct: 216 MYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGR 275
Query: 182 YE--------------------------------KVPDVLTEMKAKNIFPDNFSYRICIN 209
E + +VL EMK + PD+ SY I I
Sbjct: 276 IEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIR 335
Query: 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269
DLE M R+ + +V + TY + H N I+ A ++++ E+
Sbjct: 336 GCSNNGDLE-MAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIV 394
Query: 270 KDGIGYNFLISLYASLGNKSEVLRLWD----------------LEKTACKRYINRDY--- 310
D + YN LI+ Y G+ + L D L C++ R+
Sbjct: 395 LDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADEL 454
Query: 311 ------------ITMLEALM----KLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN 354
+ M+ LM +G + A +LKE ++ + D N ++ G C
Sbjct: 455 FEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCG 514
Query: 355 NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK 414
G + A ++ ++ +G S+ + +GY G T+ F LS+ G+
Sbjct: 515 EGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSL-----GFN 569
Query: 415 PDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKG--VDELL 472
P ++L+ Y+A +K +N +G +ELL
Sbjct: 570 P------TLLT----------------------------YNALLKGLSKNQEGELAEELL 595
Query: 473 DSMKADGI 480
MK++GI
Sbjct: 596 REMKSEGI 603
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 151/366 (41%), Gaps = 18/366 (4%)
Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191
+T +L R + + A + M M I + T+N ++ + K G+ +K L
Sbjct: 191 ETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGI 250
Query: 192 MKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES---QPHIVLDWSTYASAAHFYI 248
M+ I P +Y + + R +EG +I+ EM+S QP D TY +
Sbjct: 251 MEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQP----DMQTYNPILSWMC 306
Query: 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR 308
+AS+VL++ +E D + YN LI ++ G+ D
Sbjct: 307 NEG---RASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFY 363
Query: 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL 368
Y T++ L + E AE +++E G D+ N +I GYC +G + A A+ +++
Sbjct: 364 TYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEM 423
Query: 369 VEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLG 428
+ G T ++ + KT + + V GKG KPD ++ +++
Sbjct: 424 MTDGIQPTQFTYTSLIYVLCRKNKTREADELFEK-----VVGKGMKPDLVMMNTLMDGHC 478
Query: 429 DEGSVQDVEAFVAALRTV-IPMNRQMYHAFIKANIRNGKGVD--ELLDSMKADGIDEDEE 485
G++ + + + + I + Y+ ++ GK + EL+ MK GI D
Sbjct: 479 AIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI 538
Query: 486 TKEILV 491
+ L+
Sbjct: 539 SYNTLI 544
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 92/406 (22%), Positives = 161/406 (39%), Gaps = 42/406 (10%)
Query: 128 EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187
E ++Y LLN +V +Q K S F + G+A + TYN ++ + K ++EK
Sbjct: 111 EPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARG 170
Query: 188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFY 247
L M + PD FSY IN L+ + EM S+ + D + Y +
Sbjct: 171 FLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEM-SERGVAPDVTCY----NIL 225
Query: 248 IKANLIDKASDVLKKAEERLEQKDGI-----GYNFLISLYASLGNKSEVLRLWDLEKTAC 302
I L +K + +RL + + +N +IS + G + L++W+ K
Sbjct: 226 IDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNE 285
Query: 303 KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA- 361
+ Y +++ L G ++AE V E + S D N ++ G+C G ++ +
Sbjct: 286 REKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESL 345
Query: 362 -----------------EAILEDLVEKGKATTPNS-WAVVAAGYFDAGKTERGF----QC 399
+++ L+E GK W ++ A + A KT G C
Sbjct: 346 ELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLC 405
Query: 400 MKA----ALSVY--VEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL-RTVIPMNRQ 452
+ AL V VE G D SI+ L + +++ V + + + +N
Sbjct: 406 VNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSH 465
Query: 453 MYHAFIKANIRNGK--GVDELLDSMKADGIDEDEETKEILVCTMEK 496
+ +A I IR+ + L M +G + IL+C + K
Sbjct: 466 VCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCK 511
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/458 (22%), Positives = 175/458 (38%), Gaps = 86/458 (18%)
Query: 50 LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPC---------- 99
LD K G K V +I DL K + ALE+ D M+ +G+ C
Sbjct: 172 LDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLK 231
Query: 100 --DHAVQLDLIGRVHGFLSAESYFSNLK---------------DD-------------EK 129
DH ++L R+ L S + N+K DD EK
Sbjct: 232 EKDHKTAMELWDRL---LEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREK 288
Query: 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189
TY +L++ DKA S F ++ E ++ +TYN ++ + + G+ ++ ++
Sbjct: 289 DLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELW 348
Query: 190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249
M+ KN + SY I I ++ +I R M ++ + D +TY H
Sbjct: 349 RIMEHKNSV-NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAA-DKTTYGIFIHGLCV 406
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309
++KA V+++ E D +YA
Sbjct: 407 NGYVNKALGVMQEVESSGGHLD---------VYA-------------------------- 431
Query: 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369
Y ++++ L K EEA ++KE G ++ + NA+I G + + A L ++
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMG 491
Query: 370 EKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429
+ G T S+ ++ G AGK +K L GWKPD K + +L L
Sbjct: 492 KNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE-----NGWKPDLKTYSILLCGLCR 546
Query: 430 EGSVQ-DVEAFVAALRTVIPMNRQMYHAFIKANIRNGK 466
+ + +E + L++ + + M++ I GK
Sbjct: 547 DRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGK 584
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 39/301 (12%)
Query: 74 KRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQT 133
K+K F +A DWM ++G F P FS
Sbjct: 161 KKKEFEKARGFLDWMWKEG---FKP--------------------DVFS----------- 186
Query: 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE-M 192
Y ++N + + D AL F +M E G+A YN ++ + K ++ ++ +
Sbjct: 187 YSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLL 246
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252
+ +++P+ ++ I I+ ++ I M+ Q D TY+S H A
Sbjct: 247 EDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMK-QNEREKDLYTYSSLIHGLCDAGN 305
Query: 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN-RDYI 311
+DKA V + +ER D + YN ++ + G E L LW + + K +N Y
Sbjct: 306 VDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEH--KNSVNIVSYN 363
Query: 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK 371
+++ L++ G+ +EA + + G + D I G C NG V A +++++
Sbjct: 364 ILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESS 423
Query: 372 G 372
G
Sbjct: 424 G 424
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 101/256 (39%), Gaps = 9/256 (3%)
Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192
Y ++++C ++++ ++A + ++M + G+ L++ N ++ + + + L EM
Sbjct: 431 AYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREM 490
Query: 193 KAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES---QPHIVLDWSTYASAAHFYIK 249
P SY I I ++EM +P D TY+ +
Sbjct: 491 GKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKP----DLKTYSILLCGLCR 546
Query: 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW-DLEKTACKRYINR 308
ID A ++ + + + D + +N LI S+G + + + ++E C +
Sbjct: 547 DRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANL-V 605
Query: 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL 368
Y T++E K+G+ A + G D N ++ G C V A +D
Sbjct: 606 TYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDA 665
Query: 369 VEKGKATTPNSWAVVA 384
G T +W ++
Sbjct: 666 RNHGIFPTVYTWNILV 681
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,796,534
Number of Sequences: 539616
Number of extensions: 7813865
Number of successful extensions: 26520
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 22853
Number of HSP's gapped (non-prelim): 1906
length of query: 496
length of database: 191,569,459
effective HSP length: 122
effective length of query: 374
effective length of database: 125,736,307
effective search space: 47025378818
effective search space used: 47025378818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)