Query 010994
Match_columns 496
No_of_seqs 619 out of 2788
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 06:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.3E-67 1.4E-71 523.1 52.4 462 23-495 367-858 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.7E-66 1.7E-70 515.3 52.6 430 57-494 365-799 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 4.6E-63 1E-67 504.7 44.2 464 7-496 102-601 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 4.1E-63 9E-68 505.1 43.4 460 7-495 203-668 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.2E-60 2.5E-65 475.9 46.3 451 24-495 85-539 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3.1E-60 6.7E-65 472.9 41.9 451 9-482 105-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.5E-28 1.2E-32 252.9 50.0 426 49-494 453-881 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-27 4.5E-32 248.5 48.0 433 25-477 464-899 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.1E-21 2.4E-26 176.1 35.9 402 65-485 51-490 (966)
10 PRK11788 tetratricopeptide rep 99.9 2.2E-22 4.7E-27 189.0 31.0 288 111-405 48-346 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 7.4E-22 1.6E-26 177.3 30.7 386 57-461 111-500 (966)
12 PRK11788 tetratricopeptide rep 99.9 1.4E-21 3E-26 183.5 33.8 295 138-445 42-346 (389)
13 PRK15174 Vi polysaccharide exp 99.9 2.3E-20 5E-25 183.6 43.0 332 64-405 44-380 (656)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-19 3.9E-24 178.0 47.1 398 65-478 130-571 (615)
15 PRK11447 cellulose synthase su 99.9 6.9E-20 1.5E-24 192.6 44.8 394 69-482 276-745 (1157)
16 PRK11447 cellulose synthase su 99.9 3.9E-19 8.4E-24 187.0 48.5 416 45-478 165-700 (1157)
17 PRK15174 Vi polysaccharide exp 99.9 4.2E-19 9.2E-24 174.7 43.0 333 100-447 44-382 (656)
18 PRK10049 pgaA outer membrane p 99.9 1E-18 2.2E-23 175.7 44.2 419 57-492 10-468 (765)
19 PRK10049 pgaA outer membrane p 99.9 1.1E-17 2.3E-22 168.4 41.5 404 31-454 20-464 (765)
20 TIGR00990 3a0801s09 mitochondr 99.9 5.8E-17 1.2E-21 160.3 44.5 378 57-448 155-573 (615)
21 PRK14574 hmsH outer membrane p 99.9 3.1E-16 6.8E-21 154.9 47.2 408 67-488 73-521 (822)
22 KOG4422 Uncharacterized conser 99.8 7.9E-16 1.7E-20 133.0 37.5 407 64-480 118-592 (625)
23 KOG2003 TPR repeat-containing 99.8 1E-16 2.2E-21 139.4 29.6 397 64-474 203-718 (840)
24 PRK14574 hmsH outer membrane p 99.8 3.6E-15 7.8E-20 147.5 42.6 407 31-453 73-520 (822)
25 PRK09782 bacteriophage N4 rece 99.8 3.6E-14 7.8E-19 143.4 48.0 401 60-484 179-710 (987)
26 KOG2002 TPR-containing nuclear 99.8 3.8E-15 8.2E-20 141.5 36.4 402 64-477 309-744 (1018)
27 KOG4422 Uncharacterized conser 99.8 3.7E-14 7.9E-19 122.9 34.3 341 96-446 205-590 (625)
28 KOG1155 Anaphase-promoting com 99.7 2.3E-13 4.9E-18 119.2 37.4 372 57-445 159-535 (559)
29 KOG2002 TPR-containing nuclear 99.7 2.6E-14 5.7E-19 135.9 34.1 404 64-481 344-801 (1018)
30 PRK09782 bacteriophage N4 rece 99.7 2E-13 4.3E-18 138.2 41.7 386 67-476 318-738 (987)
31 KOG2076 RNA polymerase III tra 99.7 3.6E-13 7.7E-18 127.5 37.2 373 67-443 144-552 (895)
32 PRK10747 putative protoheme IX 99.7 8.9E-14 1.9E-18 129.3 32.0 283 144-445 97-389 (398)
33 PF13429 TPR_15: Tetratricopep 99.7 2.1E-16 4.5E-21 140.6 13.2 262 136-405 13-276 (280)
34 KOG1173 Anaphase-promoting com 99.7 2.3E-12 5E-17 115.9 36.4 284 202-493 245-531 (611)
35 TIGR00540 hemY_coli hemY prote 99.7 2.8E-13 6E-18 126.8 31.6 290 143-445 96-398 (409)
36 PRK10747 putative protoheme IX 99.7 2.1E-13 4.6E-18 126.8 30.3 283 111-405 97-389 (398)
37 KOG2076 RNA polymerase III tra 99.7 1.5E-12 3.3E-17 123.3 35.7 347 109-465 150-540 (895)
38 PF13429 TPR_15: Tetratricopep 99.7 6.7E-16 1.4E-20 137.3 12.4 259 105-370 15-276 (280)
39 TIGR00540 hemY_coli hemY prote 99.7 4.8E-13 1E-17 125.2 31.9 295 107-405 93-398 (409)
40 KOG0495 HAT repeat protein [RN 99.7 3.9E-11 8.3E-16 109.9 41.9 403 56-477 473-879 (913)
41 KOG1126 DNA-binding cell divis 99.7 6.4E-14 1.4E-18 128.3 23.7 286 181-482 334-624 (638)
42 KOG0547 Translocase of outer m 99.6 1.9E-12 4.1E-17 114.3 31.3 398 65-476 118-564 (606)
43 KOG2003 TPR repeat-containing 99.6 2.9E-12 6.3E-17 112.1 30.4 350 69-432 244-709 (840)
44 KOG1126 DNA-binding cell divis 99.6 8.9E-14 1.9E-18 127.4 22.1 285 77-375 334-624 (638)
45 COG3071 HemY Uncharacterized e 99.6 6.1E-12 1.3E-16 108.7 30.9 286 144-445 97-389 (400)
46 COG2956 Predicted N-acetylgluc 99.6 7.3E-12 1.6E-16 105.0 29.1 286 180-477 49-346 (389)
47 KOG1155 Anaphase-promoting com 99.6 3.5E-11 7.5E-16 105.8 33.2 305 174-494 235-550 (559)
48 KOG0495 HAT repeat protein [RN 99.6 5.8E-10 1.3E-14 102.4 41.2 384 74-477 388-781 (913)
49 COG3071 HemY Uncharacterized e 99.6 2.5E-11 5.3E-16 105.0 29.1 291 178-483 96-395 (400)
50 COG2956 Predicted N-acetylgluc 99.6 3.2E-11 6.9E-16 101.2 28.2 286 144-445 48-346 (389)
51 KOG1173 Anaphase-promoting com 99.5 1.5E-10 3.2E-15 104.5 29.6 285 130-428 243-533 (611)
52 KOG1915 Cell cycle control pro 99.5 1.6E-08 3.5E-13 89.7 39.9 199 270-478 320-536 (677)
53 KOG1915 Cell cycle control pro 99.5 7.3E-09 1.6E-13 91.8 37.3 406 58-479 69-501 (677)
54 PRK12370 invasion protein regu 99.5 6.1E-11 1.3E-15 115.5 26.6 266 200-479 255-536 (553)
55 TIGR02521 type_IV_pilW type IV 99.5 9.5E-11 2.1E-15 101.7 25.4 200 237-445 31-231 (234)
56 PRK12370 invasion protein regu 99.4 6.7E-11 1.4E-15 115.2 25.9 217 146-370 276-501 (553)
57 KOG2047 mRNA splicing factor [ 99.4 1.4E-08 3.1E-13 93.3 38.5 424 23-466 207-709 (835)
58 KOG1156 N-terminal acetyltrans 99.4 1E-08 2.2E-13 94.5 37.3 393 72-480 17-470 (700)
59 KOG4318 Bicoid mRNA stability 99.4 1.5E-10 3.3E-15 109.7 26.1 91 48-149 11-101 (1088)
60 KOG1129 TPR repeat-containing 99.4 3.8E-11 8.3E-16 100.8 19.6 238 235-484 221-462 (478)
61 PF12569 NARP1: NMDA receptor- 99.4 1.7E-09 3.6E-14 101.8 32.2 295 103-407 9-335 (517)
62 PF13041 PPR_2: PPR repeat fam 99.4 7E-13 1.5E-17 82.6 6.6 50 129-178 1-50 (50)
63 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.8E-15 100.1 24.3 200 131-334 31-230 (234)
64 KOG1129 TPR repeat-containing 99.4 2.5E-11 5.3E-16 102.0 16.5 230 135-372 227-459 (478)
65 KOG4318 Bicoid mRNA stability 99.4 4.3E-11 9.3E-16 113.3 19.9 274 152-465 11-285 (1088)
66 KOG1174 Anaphase-promoting com 99.4 3.8E-08 8.2E-13 85.9 35.7 396 67-477 48-499 (564)
67 KOG2047 mRNA splicing factor [ 99.4 3.6E-08 7.8E-13 90.8 37.2 400 58-476 134-613 (835)
68 PF13041 PPR_2: PPR repeat fam 99.4 8.4E-13 1.8E-17 82.2 5.2 50 164-213 1-50 (50)
69 KOG2376 Signal recognition par 99.4 3.4E-08 7.3E-13 90.1 36.3 425 30-475 13-517 (652)
70 KOG0547 Translocase of outer m 99.3 1.6E-09 3.4E-14 96.3 25.5 151 318-477 337-490 (606)
71 PF12569 NARP1: NMDA receptor- 99.3 3.9E-09 8.5E-14 99.4 28.2 296 66-370 8-333 (517)
72 KOG4162 Predicted calmodulin-b 99.3 1.8E-07 3.8E-12 88.3 36.5 372 97-478 322-783 (799)
73 KOG1840 Kinesin light chain [C 99.3 3.6E-09 7.7E-14 98.5 24.2 243 201-444 199-477 (508)
74 PRK11189 lipoprotein NlpI; Pro 99.3 2E-08 4.4E-13 89.5 28.0 96 239-336 66-161 (296)
75 COG3063 PilF Tfp pilus assembl 99.2 2.4E-08 5.2E-13 80.4 24.0 196 243-447 41-237 (250)
76 KOG1174 Anaphase-promoting com 99.2 4.8E-08 1E-12 85.2 27.4 266 130-405 231-499 (564)
77 KOG1840 Kinesin light chain [C 99.2 7.2E-09 1.6E-13 96.5 23.9 245 232-476 194-477 (508)
78 cd05804 StaR_like StaR_like; a 99.2 1.9E-07 4.1E-12 86.7 33.5 311 131-445 6-335 (355)
79 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.6E-13 90.1 24.0 89 105-194 71-160 (296)
80 COG3063 PilF Tfp pilus assembl 99.2 4.8E-08 1E-12 78.7 23.6 200 133-336 37-236 (250)
81 KOG3785 Uncharacterized conser 99.2 9.2E-08 2E-12 81.9 26.4 390 70-488 65-498 (557)
82 KOG4162 Predicted calmodulin-b 99.2 2E-07 4.3E-12 88.0 29.6 129 310-446 653-783 (799)
83 KOG1156 N-terminal acetyltrans 99.2 2E-06 4.3E-11 79.8 35.4 356 71-445 50-467 (700)
84 cd05804 StaR_like StaR_like; a 99.1 3.5E-07 7.7E-12 84.8 31.4 195 64-263 8-212 (355)
85 KOG2376 Signal recognition par 99.1 1.4E-06 2.9E-11 80.0 32.7 408 65-495 15-503 (652)
86 KOG0624 dsRNA-activated protei 99.1 1.2E-06 2.6E-11 74.9 30.3 314 60-405 36-369 (504)
87 KOG4340 Uncharacterized conser 99.1 8.9E-07 1.9E-11 74.2 26.8 299 57-367 5-335 (459)
88 PF04733 Coatomer_E: Coatomer 99.1 5.9E-09 1.3E-13 91.5 15.0 254 174-449 9-268 (290)
89 KOG1914 mRNA cleavage and poly 99.1 1.2E-05 2.6E-10 73.2 35.4 382 57-448 15-503 (656)
90 PRK04841 transcriptional regul 99.0 2E-06 4.4E-11 90.4 35.9 339 107-446 383-760 (903)
91 KOG0548 Molecular co-chaperone 99.0 4.8E-06 1E-10 75.7 32.3 210 242-462 229-471 (539)
92 PF04733 Coatomer_E: Coatomer 99.0 1.9E-08 4.1E-13 88.4 16.5 150 245-405 110-264 (290)
93 KOG1125 TPR repeat-containing 99.0 9.4E-08 2E-12 87.2 19.6 223 107-334 294-525 (579)
94 KOG3785 Uncharacterized conser 99.0 1.4E-06 3E-11 74.8 25.2 200 242-454 290-497 (557)
95 KOG0624 dsRNA-activated protei 99.0 9.6E-06 2.1E-10 69.6 29.4 300 136-453 43-377 (504)
96 KOG0548 Molecular co-chaperone 98.9 5.3E-06 1.1E-10 75.5 28.7 399 70-487 10-462 (539)
97 PRK04841 transcriptional regul 98.9 6E-06 1.3E-10 86.9 33.8 335 139-479 382-761 (903)
98 KOG1127 TPR repeat-containing 98.9 1.6E-06 3.5E-11 84.3 26.2 374 77-465 473-898 (1238)
99 KOG1125 TPR repeat-containing 98.9 4.8E-07 1E-11 82.8 20.2 222 176-405 295-526 (579)
100 PLN02789 farnesyltranstransfer 98.9 3.2E-06 6.8E-11 75.5 25.1 200 113-318 52-266 (320)
101 KOG1070 rRNA processing protei 98.8 5E-07 1.1E-11 90.6 20.7 205 270-484 1456-1669(1710)
102 KOG4340 Uncharacterized conser 98.8 1.3E-05 2.8E-10 67.5 25.6 295 96-402 8-335 (459)
103 PLN02789 farnesyltranstransfer 98.8 9.7E-06 2.1E-10 72.4 26.8 185 214-404 50-248 (320)
104 KOG1128 Uncharacterized conser 98.8 5.3E-07 1.1E-11 84.7 18.1 216 168-405 400-615 (777)
105 PF12854 PPR_1: PPR repeat 98.8 1.1E-08 2.4E-13 57.0 4.1 32 196-227 2-33 (34)
106 KOG3617 WD40 and TPR repeat-co 98.8 2.7E-05 5.9E-10 74.5 28.4 347 61-443 756-1171(1416)
107 KOG3616 Selective LIM binding 98.8 1.5E-05 3.2E-10 75.3 26.2 195 207-441 738-932 (1636)
108 TIGR03302 OM_YfiO outer membra 98.7 4E-06 8.8E-11 72.6 20.9 189 235-447 31-233 (235)
109 KOG0985 Vesicle coat protein c 98.7 0.00029 6.2E-09 69.4 34.4 202 167-404 1105-1306(1666)
110 KOG1070 rRNA processing protei 98.7 2E-05 4.4E-10 79.6 26.8 231 200-439 1457-1693(1710)
111 KOG0985 Vesicle coat protein c 98.7 5.9E-05 1.3E-09 73.9 28.6 279 112-436 1089-1373(1666)
112 PRK10370 formate-dependent nit 98.7 3.3E-06 7.1E-11 70.1 18.1 118 285-405 52-172 (198)
113 COG4783 Putative Zn-dependent 98.7 4.7E-05 1E-09 68.8 25.8 149 279-454 313-462 (484)
114 PF12854 PPR_1: PPR repeat 98.7 3.5E-08 7.6E-13 54.9 4.1 32 372-403 2-33 (34)
115 KOG1128 Uncharacterized conser 98.7 1.4E-06 3.1E-11 81.9 16.9 220 232-477 393-615 (777)
116 PRK10370 formate-dependent nit 98.7 5.2E-06 1.1E-10 69.0 18.7 157 279-456 23-183 (198)
117 KOG1127 TPR repeat-containing 98.7 0.00011 2.4E-09 72.0 29.6 400 64-474 494-992 (1238)
118 PRK15359 type III secretion sy 98.7 2.5E-06 5.5E-11 66.9 15.8 109 345-460 27-135 (144)
119 TIGR03302 OM_YfiO outer membra 98.7 7.6E-06 1.6E-10 70.9 20.3 187 199-405 31-231 (235)
120 KOG3617 WD40 and TPR repeat-co 98.6 3.9E-05 8.5E-10 73.5 25.4 231 106-369 736-994 (1416)
121 COG5010 TadD Flp pilus assembl 98.6 1.8E-05 4E-10 65.6 20.6 159 170-333 70-228 (257)
122 KOG2053 Mitochondrial inherita 98.6 0.00059 1.3E-08 66.5 38.4 405 72-490 19-514 (932)
123 KOG3616 Selective LIM binding 98.6 4.4E-05 9.4E-10 72.3 25.4 195 68-296 738-932 (1636)
124 KOG3081 Vesicle coat complex C 98.6 3.5E-05 7.6E-10 63.9 21.8 117 279-405 115-235 (299)
125 KOG3081 Vesicle coat complex C 98.6 6.1E-05 1.3E-09 62.6 23.0 247 140-404 17-269 (299)
126 PRK14720 transcript cleavage f 98.6 4.1E-05 8.8E-10 76.5 25.4 239 165-463 30-269 (906)
127 PRK15179 Vi polysaccharide bio 98.6 9.5E-06 2.1E-10 80.0 20.9 131 96-228 84-215 (694)
128 COG5010 TadD Flp pilus assembl 98.6 2.2E-05 4.8E-10 65.1 19.1 157 276-441 70-226 (257)
129 PRK14720 transcript cleavage f 98.6 4.1E-05 8.9E-10 76.5 24.5 151 202-388 117-268 (906)
130 PRK15359 type III secretion sy 98.5 5.1E-06 1.1E-10 65.2 14.6 118 362-491 13-132 (144)
131 KOG3060 Uncharacterized conser 98.5 6.6E-05 1.4E-09 61.9 20.9 198 250-457 25-231 (289)
132 PRK15179 Vi polysaccharide bio 98.5 7.1E-05 1.5E-09 74.0 25.3 180 270-464 84-268 (694)
133 KOG1914 mRNA cleavage and poly 98.5 0.00089 1.9E-08 61.5 32.5 130 96-228 18-164 (656)
134 TIGR02552 LcrH_SycD type III s 98.4 9.8E-06 2.1E-10 63.2 12.9 102 343-451 18-119 (135)
135 KOG3060 Uncharacterized conser 98.4 0.00031 6.6E-09 58.1 21.0 187 215-405 26-219 (289)
136 COG4783 Putative Zn-dependent 98.4 0.00016 3.5E-09 65.5 20.5 113 319-439 318-430 (484)
137 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.6E-11 49.7 4.5 34 133-166 2-35 (35)
138 TIGR02552 LcrH_SycD type III s 98.3 2.5E-05 5.5E-10 60.9 13.4 96 308-405 18-113 (135)
139 PF13812 PPR_3: Pentatricopept 98.2 1.8E-06 4E-11 48.5 4.1 33 132-164 2-34 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.4E-05 7.4E-10 70.4 13.1 119 105-228 176-295 (395)
141 PF13812 PPR_3: Pentatricopept 98.2 2.3E-06 5E-11 48.1 3.1 33 167-199 2-34 (34)
142 TIGR00756 PPR pentatricopeptid 98.1 5.6E-06 1.2E-10 46.8 4.5 33 344-376 2-34 (35)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.9E-05 1.9E-09 67.7 14.1 124 310-445 172-296 (395)
144 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00014 3.1E-09 55.1 13.4 107 345-454 5-113 (119)
145 KOG2053 Mitochondrial inherita 98.1 0.013 2.8E-07 57.6 29.6 224 109-338 20-257 (932)
146 PF08579 RPM2: Mitochondrial r 98.1 3.7E-05 8E-10 54.9 8.6 79 135-213 29-116 (120)
147 PF09976 TPR_21: Tetratricopep 98.0 0.00029 6.3E-09 55.5 14.1 87 314-402 55-143 (145)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00029 6.2E-09 55.6 13.3 116 250-367 24-143 (145)
149 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00027 6E-09 53.5 12.2 97 64-160 4-105 (119)
150 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.014 3.1E-07 52.8 32.6 87 57-145 37-123 (660)
151 PF01535 PPR: PPR repeat; Int 97.9 1.2E-05 2.6E-10 43.9 3.3 30 133-162 2-31 (31)
152 PF06239 ECSIT: Evolutionarily 97.9 8E-05 1.7E-09 60.3 9.1 97 118-215 34-152 (228)
153 cd00189 TPR Tetratricopeptide 97.9 0.00025 5.5E-09 51.0 11.3 91 347-444 5-95 (100)
154 PF10037 MRP-S27: Mitochondria 97.9 0.00017 3.7E-09 66.2 12.1 119 130-249 65-185 (429)
155 PRK10866 outer membrane biogen 97.9 0.012 2.7E-07 50.6 23.0 180 243-444 38-239 (243)
156 PF14938 SNAP: Soluble NSF att 97.9 0.0015 3.3E-08 58.0 17.7 192 242-465 40-249 (282)
157 PF10037 MRP-S27: Mitochondria 97.9 0.00031 6.7E-09 64.6 12.8 122 269-390 63-186 (429)
158 PLN03088 SGT1, suppressor of 97.9 0.0008 1.7E-08 61.8 15.5 87 317-405 12-98 (356)
159 KOG0553 TPR repeat-containing 97.9 0.00053 1.1E-08 58.4 12.9 104 315-427 89-192 (304)
160 PF08579 RPM2: Mitochondrial r 97.8 0.00027 5.8E-09 50.6 9.1 77 313-389 31-116 (120)
161 PF05843 Suf: Suppressor of fo 97.8 0.00037 8.1E-09 61.6 12.3 136 308-451 2-141 (280)
162 PLN03088 SGT1, suppressor of 97.8 0.00059 1.3E-08 62.6 13.2 92 279-372 9-100 (356)
163 PF01535 PPR: PPR repeat; Int 97.8 4.3E-05 9.3E-10 41.7 3.7 29 344-372 2-30 (31)
164 KOG2041 WD40 repeat protein [G 97.8 0.027 5.9E-07 53.9 23.4 180 57-261 687-876 (1189)
165 PF12895 Apc3: Anaphase-promot 97.7 0.00014 3E-09 51.1 6.9 79 251-331 3-82 (84)
166 KOG0553 TPR repeat-containing 97.7 0.00045 9.8E-09 58.8 10.9 99 280-382 89-187 (304)
167 PF05843 Suf: Suppressor of fo 97.7 0.0012 2.7E-08 58.3 14.4 145 273-427 2-150 (280)
168 cd00189 TPR Tetratricopeptide 97.7 0.00057 1.2E-08 49.1 10.5 21 243-263 40-60 (100)
169 PF12895 Apc3: Anaphase-promot 97.7 7.5E-05 1.6E-09 52.4 5.1 80 321-402 3-83 (84)
170 PRK02603 photosystem I assembl 97.7 0.0023 4.9E-08 52.2 14.3 60 346-405 39-100 (172)
171 KOG0550 Molecular chaperone (D 97.7 0.029 6.3E-07 50.3 21.2 89 316-405 258-349 (486)
172 PRK15363 pathogenicity island 97.7 0.0019 4.1E-08 50.1 12.5 91 243-335 41-131 (157)
173 PF07079 DUF1347: Protein of u 97.7 0.044 9.5E-07 49.9 35.6 138 72-213 16-179 (549)
174 PRK15363 pathogenicity island 97.7 0.0013 2.8E-08 51.0 11.4 94 310-405 38-131 (157)
175 KOG2796 Uncharacterized conser 97.6 0.0082 1.8E-07 50.2 16.2 129 276-405 181-314 (366)
176 CHL00033 ycf3 photosystem I as 97.6 0.0018 3.9E-08 52.6 12.8 62 240-301 38-101 (168)
177 KOG0550 Molecular chaperone (D 97.6 0.036 7.8E-07 49.7 21.1 275 68-372 55-351 (486)
178 PRK02603 photosystem I assembl 97.6 0.004 8.7E-08 50.7 14.9 86 239-325 37-124 (172)
179 PRK10153 DNA-binding transcrip 97.6 0.0036 7.9E-08 60.2 16.4 134 269-405 334-481 (517)
180 PF14938 SNAP: Soluble NSF att 97.6 0.019 4E-07 51.1 19.9 160 275-453 97-270 (282)
181 PF13525 YfiO: Outer membrane 97.6 0.014 3.1E-07 48.9 17.9 61 243-303 11-73 (203)
182 PF13432 TPR_16: Tetratricopep 97.5 0.00053 1.2E-08 45.2 7.1 56 349-405 4-59 (65)
183 CHL00033 ycf3 photosystem I as 97.5 0.0021 4.5E-08 52.2 11.9 23 205-227 76-98 (168)
184 PF14559 TPR_19: Tetratricopep 97.5 0.00034 7.3E-09 46.7 5.9 51 110-160 3-54 (68)
185 COG4700 Uncharacterized protei 97.5 0.033 7.2E-07 44.1 17.0 134 305-445 87-221 (251)
186 PF14559 TPR_19: Tetratricopep 97.5 0.00057 1.2E-08 45.6 6.6 51 354-405 3-53 (68)
187 PRK10866 outer membrane biogen 97.5 0.031 6.7E-07 48.2 18.6 56 278-333 181-238 (243)
188 PF13414 TPR_11: TPR repeat; P 97.5 0.00051 1.1E-08 46.0 6.2 63 342-405 3-66 (69)
189 COG3898 Uncharacterized membra 97.4 0.078 1.7E-06 47.3 27.5 249 110-371 132-392 (531)
190 COG4235 Cytochrome c biogenesi 97.4 0.0088 1.9E-07 51.5 14.5 104 340-450 154-260 (287)
191 KOG1130 Predicted G-alpha GTPa 97.4 0.0021 4.5E-08 57.2 10.4 135 308-442 196-340 (639)
192 KOG2041 WD40 repeat protein [G 97.4 0.054 1.2E-06 51.9 20.0 203 163-403 689-904 (1189)
193 KOG1130 Predicted G-alpha GTPa 97.4 0.0025 5.3E-08 56.7 10.8 134 343-476 196-342 (639)
194 PF03704 BTAD: Bacterial trans 97.4 0.015 3.3E-07 45.8 14.7 77 344-421 64-140 (146)
195 COG4700 Uncharacterized protei 97.4 0.026 5.5E-07 44.8 15.0 95 241-335 93-188 (251)
196 KOG1538 Uncharacterized conser 97.4 0.0097 2.1E-07 56.2 14.9 214 133-370 558-801 (1081)
197 PF03704 BTAD: Bacterial trans 97.4 0.0038 8.3E-08 49.3 11.1 120 71-204 15-139 (146)
198 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.7E-08 43.4 7.0 61 383-450 3-64 (65)
199 PF06239 ECSIT: Evolutionarily 97.3 0.0018 3.9E-08 52.7 8.9 102 165-286 46-152 (228)
200 PRK10153 DNA-binding transcrip 97.3 0.02 4.3E-07 55.2 17.4 139 304-451 334-487 (517)
201 COG4235 Cytochrome c biogenesi 97.3 0.015 3.2E-07 50.1 14.5 108 295-405 145-255 (287)
202 PRK10803 tol-pal system protei 97.3 0.011 2.3E-07 51.4 13.9 104 345-451 146-251 (263)
203 PF12688 TPR_5: Tetratrico pep 97.3 0.029 6.4E-07 41.9 14.3 56 350-405 9-66 (120)
204 PF13525 YfiO: Outer membrane 97.2 0.099 2.1E-06 43.8 18.6 167 275-465 8-192 (203)
205 PF13414 TPR_11: TPR repeat; P 97.2 0.0019 4.2E-08 43.1 6.8 64 376-446 2-67 (69)
206 PF12688 TPR_5: Tetratrico pep 97.2 0.031 6.7E-07 41.8 13.5 89 316-404 10-102 (120)
207 KOG2796 Uncharacterized conser 97.2 0.11 2.4E-06 43.8 19.8 131 241-372 181-316 (366)
208 COG3898 Uncharacterized membra 97.1 0.18 3.8E-06 45.2 28.7 281 109-405 95-391 (531)
209 PF13371 TPR_9: Tetratricopept 97.1 0.0042 9.2E-08 42.0 7.7 55 350-405 3-57 (73)
210 PRK10803 tol-pal system protei 97.0 0.012 2.7E-07 51.1 11.7 97 64-160 145-246 (263)
211 PF04840 Vps16_C: Vps16, C-ter 97.0 0.24 5.1E-06 44.6 27.0 82 276-367 181-262 (319)
212 KOG3941 Intermediate in Toll s 96.9 0.0087 1.9E-07 50.6 9.2 99 118-216 54-173 (406)
213 PF13424 TPR_12: Tetratricopep 96.8 0.0043 9.2E-08 42.7 6.0 66 378-444 6-73 (78)
214 KOG1585 Protein required for f 96.8 0.081 1.8E-06 44.0 13.5 209 62-296 31-251 (308)
215 KOG2280 Vacuolar assembly/sort 96.8 0.63 1.4E-05 45.5 26.5 341 57-440 427-793 (829)
216 PF04840 Vps16_C: Vps16, C-ter 96.7 0.43 9.3E-06 43.0 29.9 111 308-443 178-288 (319)
217 PF13281 DUF4071: Domain of un 96.6 0.54 1.2E-05 42.8 20.3 174 204-405 144-333 (374)
218 PF12921 ATP13: Mitochondrial 96.6 0.044 9.6E-07 41.4 10.3 54 411-464 46-101 (126)
219 PF12921 ATP13: Mitochondrial 96.6 0.038 8.2E-07 41.8 10.0 52 231-282 46-98 (126)
220 COG4649 Uncharacterized protei 96.5 0.08 1.7E-06 41.5 11.1 136 60-196 57-197 (221)
221 PF13371 TPR_9: Tetratricopept 96.5 0.015 3.2E-07 39.3 6.7 61 384-451 2-63 (73)
222 PRK11906 transcriptional regul 96.5 0.23 5E-06 46.0 15.8 144 323-474 274-432 (458)
223 KOG1538 Uncharacterized conser 96.5 0.38 8.2E-06 46.1 17.2 196 80-295 618-827 (1081)
224 PF04053 Coatomer_WDAD: Coatom 96.4 0.036 7.7E-07 52.2 11.0 131 64-226 297-427 (443)
225 KOG2114 Vacuolar assembly/sort 96.4 1.2 2.6E-05 44.4 24.0 179 61-263 333-516 (933)
226 COG4105 ComL DNA uptake lipopr 96.4 0.51 1.1E-05 40.1 19.6 66 382-450 172-237 (254)
227 COG1729 Uncharacterized protei 96.4 0.084 1.8E-06 45.0 11.7 96 64-160 144-244 (262)
228 PF07079 DUF1347: Protein of u 96.4 0.82 1.8E-05 42.1 35.1 405 66-489 50-530 (549)
229 PRK15331 chaperone protein Sic 96.4 0.071 1.5E-06 41.8 10.3 84 249-334 49-132 (165)
230 smart00299 CLH Clathrin heavy 96.3 0.29 6.4E-06 38.1 14.2 125 135-283 11-136 (140)
231 PF13281 DUF4071: Domain of un 96.3 0.81 1.8E-05 41.8 19.3 167 278-450 147-338 (374)
232 PRK15331 chaperone protein Sic 96.3 0.12 2.6E-06 40.6 11.4 86 318-405 48-133 (165)
233 PF13424 TPR_12: Tetratricopep 96.3 0.018 3.9E-07 39.5 6.4 62 238-299 6-73 (78)
234 PF04053 Coatomer_WDAD: Coatom 96.2 0.16 3.4E-06 48.0 13.5 132 131-296 295-426 (443)
235 KOG1920 IkappaB kinase complex 96.1 2.1 4.7E-05 44.4 27.9 331 65-443 680-1052(1265)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.1 2.2E-06 48.2 11.2 62 377-445 75-140 (453)
237 KOG2280 Vacuolar assembly/sort 96.0 1.7 3.8E-05 42.7 20.6 267 99-402 508-795 (829)
238 smart00299 CLH Clathrin heavy 96.0 0.55 1.2E-05 36.6 15.1 126 310-462 10-136 (140)
239 COG3629 DnrI DNA-binding trans 96.0 0.1 2.2E-06 45.3 10.4 83 343-426 154-236 (280)
240 PF09205 DUF1955: Domain of un 95.9 0.49 1.1E-05 35.4 13.9 58 347-405 91-148 (161)
241 KOG0543 FKBP-type peptidyl-pro 95.8 0.2 4.2E-06 45.3 11.8 92 379-476 259-353 (397)
242 PF10300 DUF3808: Protein of u 95.8 0.58 1.3E-05 44.9 15.8 162 275-444 191-374 (468)
243 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.18 4E-06 46.5 11.5 61 308-370 76-140 (453)
244 COG4785 NlpI Lipoprotein NlpI, 95.7 1 2.2E-05 37.1 15.7 89 107-196 74-163 (297)
245 PF08631 SPO22: Meiosis protei 95.6 1.5 3.2E-05 39.0 24.3 164 273-442 85-271 (278)
246 KOG3941 Intermediate in Toll s 95.6 0.12 2.6E-06 44.0 9.2 31 466-496 140-170 (406)
247 PF13428 TPR_14: Tetratricopep 95.6 0.046 9.9E-07 32.4 5.1 40 419-458 3-42 (44)
248 COG1747 Uncharacterized N-term 95.6 2.1 4.5E-05 40.3 19.0 182 95-282 63-249 (711)
249 KOG1941 Acetylcholine receptor 95.6 0.29 6.2E-06 43.4 11.6 166 203-368 85-272 (518)
250 PF10300 DUF3808: Protein of u 95.5 0.88 1.9E-05 43.7 16.0 58 347-405 310-375 (468)
251 COG1729 Uncharacterized protei 95.5 0.46 1E-05 40.7 12.3 105 344-453 144-251 (262)
252 COG4105 ComL DNA uptake lipopr 95.4 1.5 3.1E-05 37.4 18.6 169 282-477 44-232 (254)
253 COG3118 Thioredoxin domain-con 95.4 1.5 3.3E-05 38.1 15.1 145 141-289 144-289 (304)
254 COG3118 Thioredoxin domain-con 95.4 1.7 3.6E-05 37.9 17.2 142 49-194 121-264 (304)
255 PF13512 TPR_18: Tetratricopep 95.4 0.34 7.3E-06 37.2 10.0 73 106-178 18-94 (142)
256 KOG0543 FKBP-type peptidyl-pro 95.3 0.66 1.4E-05 42.0 13.1 96 308-405 258-354 (397)
257 KOG4555 TPR repeat-containing 95.2 0.5 1.1E-05 35.3 10.1 92 245-337 51-145 (175)
258 PF13170 DUF4003: Protein of u 95.2 2.1 4.6E-05 38.1 21.9 160 253-414 78-254 (297)
259 KOG1941 Acetylcholine receptor 95.2 1.2 2.5E-05 39.8 14.0 228 177-405 17-274 (518)
260 PF08631 SPO22: Meiosis protei 95.2 2.1 4.6E-05 37.9 22.5 19 73-91 4-22 (278)
261 COG3629 DnrI DNA-binding trans 95.1 0.27 5.8E-06 42.8 9.8 74 419-492 155-235 (280)
262 KOG4555 TPR repeat-containing 95.0 0.64 1.4E-05 34.7 10.2 89 351-445 52-143 (175)
263 KOG1464 COP9 signalosome, subu 95.0 2 4.4E-05 36.7 18.2 209 196-405 21-259 (440)
264 PF09205 DUF1955: Domain of un 95.0 1.1 2.4E-05 33.6 13.0 63 311-374 90-152 (161)
265 COG0457 NrfG FOG: TPR repeat [ 94.9 2.1 4.6E-05 36.4 27.4 202 237-446 59-265 (291)
266 KOG2114 Vacuolar assembly/sort 94.8 0.66 1.4E-05 46.0 12.5 182 96-297 332-515 (933)
267 COG5107 RNA14 Pre-mRNA 3'-end 94.7 3.6 7.8E-05 38.1 20.3 129 203-335 399-530 (660)
268 PF04184 ST7: ST7 protein; In 94.7 3 6.6E-05 39.2 15.8 57 207-263 265-321 (539)
269 PF13512 TPR_18: Tetratricopep 94.6 1.5 3.2E-05 33.8 11.6 55 283-337 21-77 (142)
270 PF13428 TPR_14: Tetratricopep 94.5 0.14 3.1E-06 30.2 5.1 38 344-382 3-40 (44)
271 COG0457 NrfG FOG: TPR repeat [ 94.4 2.8 6.2E-05 35.6 27.1 221 250-477 36-264 (291)
272 KOG2610 Uncharacterized conser 94.4 3.3 7.2E-05 36.7 14.5 151 143-297 115-272 (491)
273 PF02284 COX5A: Cytochrome c o 94.3 0.81 1.8E-05 32.5 8.8 76 380-460 11-88 (108)
274 PF10602 RPN7: 26S proteasome 94.2 0.9 1.9E-05 37.0 10.5 97 132-228 37-140 (177)
275 cd00923 Cyt_c_Oxidase_Va Cytoc 94.1 1.4 3.1E-05 30.9 9.5 64 392-460 22-85 (103)
276 COG4649 Uncharacterized protei 94.0 2.6 5.5E-05 33.5 12.7 121 213-335 70-195 (221)
277 KOG1258 mRNA processing protei 93.9 6.4 0.00014 38.0 23.6 328 110-465 57-414 (577)
278 PF10602 RPN7: 26S proteasome 93.9 0.78 1.7E-05 37.3 9.7 18 388-405 124-141 (177)
279 PF09613 HrpB1_HrpK: Bacterial 93.9 2.5 5.5E-05 33.2 12.1 20 141-160 54-73 (160)
280 KOG2066 Vacuolar assembly/sort 93.8 7.8 0.00017 38.6 24.9 103 104-213 362-467 (846)
281 KOG0276 Vesicle coat complex C 93.8 1.7 3.8E-05 41.6 12.6 98 143-262 649-746 (794)
282 PF00637 Clathrin: Region in C 93.7 0.0027 5.9E-08 49.9 -4.7 84 137-227 13-96 (143)
283 PF13176 TPR_7: Tetratricopept 93.7 0.18 3.9E-06 28.2 4.1 27 379-405 1-27 (36)
284 PF13431 TPR_17: Tetratricopep 93.7 0.071 1.5E-06 29.4 2.3 30 122-151 3-33 (34)
285 KOG1258 mRNA processing protei 93.7 7.1 0.00015 37.7 32.4 387 59-465 42-489 (577)
286 PF09613 HrpB1_HrpK: Bacterial 93.4 3.1 6.7E-05 32.8 12.6 113 69-186 17-129 (160)
287 KOG2610 Uncharacterized conser 93.4 4.1 9E-05 36.1 13.4 156 106-263 111-273 (491)
288 PF04184 ST7: ST7 protein; In 93.4 7.2 0.00016 36.9 16.4 60 311-370 263-323 (539)
289 PF13170 DUF4003: Protein of u 93.3 3.4 7.4E-05 36.8 13.4 58 46-103 81-144 (297)
290 PF02259 FAT: FAT domain; Int 93.2 6.9 0.00015 36.1 21.3 70 305-374 144-216 (352)
291 PF00515 TPR_1: Tetratricopept 93.2 0.25 5.4E-06 27.1 4.1 28 378-405 2-29 (34)
292 PRK11906 transcriptional regul 92.9 8.4 0.00018 36.2 19.2 159 273-441 252-431 (458)
293 PF07035 Mic1: Colon cancer-as 92.9 4.1 8.8E-05 32.5 15.1 23 231-253 23-45 (167)
294 KOG1920 IkappaB kinase complex 92.5 16 0.00035 38.6 23.0 86 345-445 942-1027(1265)
295 PF13176 TPR_7: Tetratricopept 92.4 0.38 8.3E-06 26.9 4.2 25 133-157 1-25 (36)
296 PF13431 TPR_17: Tetratricopep 92.3 0.26 5.6E-06 27.2 3.3 32 365-397 2-33 (34)
297 PRK09687 putative lyase; Provi 92.3 7.8 0.00017 34.4 24.5 135 341-495 141-278 (280)
298 PF11207 DUF2989: Protein of u 91.7 2.4 5.3E-05 34.7 9.4 84 350-437 115-198 (203)
299 PF04097 Nic96: Nup93/Nic96; 91.5 14 0.0003 37.1 16.6 86 208-299 265-354 (613)
300 PF07719 TPR_2: Tetratricopept 91.5 0.54 1.2E-05 25.6 4.1 27 379-405 3-29 (34)
301 PF07035 Mic1: Colon cancer-as 91.2 6.5 0.00014 31.4 16.2 98 154-262 17-114 (167)
302 PF13929 mRNA_stabil: mRNA sta 90.9 10 0.00022 33.2 15.1 61 163-223 199-260 (292)
303 KOG1585 Protein required for f 90.7 9.6 0.00021 32.4 15.3 119 320-441 123-251 (308)
304 KOG0276 Vesicle coat complex C 90.6 17 0.00038 35.2 15.1 151 107-296 595-745 (794)
305 COG3947 Response regulator con 90.4 11 0.00025 32.8 13.2 57 241-298 283-339 (361)
306 KOG4570 Uncharacterized conser 90.4 11 0.00023 33.3 12.4 95 309-405 66-163 (418)
307 KOG1550 Extracellular protein 90.3 20 0.00044 35.6 19.5 120 249-372 261-394 (552)
308 COG2976 Uncharacterized protei 90.2 9 0.0002 31.3 11.3 20 209-228 167-186 (207)
309 KOG2063 Vacuolar assembly/sort 90.0 26 0.00057 36.3 18.5 115 63-177 505-637 (877)
310 PF13929 mRNA_stabil: mRNA sta 89.9 13 0.00028 32.6 15.7 62 270-331 200-262 (292)
311 TIGR02561 HrpB1_HrpK type III 89.8 7.9 0.00017 30.1 12.0 55 74-130 22-76 (153)
312 COG2976 Uncharacterized protei 89.8 2.8 6.1E-05 34.0 8.0 131 62-196 54-189 (207)
313 KOG1550 Extracellular protein 89.4 24 0.00052 35.0 22.3 242 147-405 228-503 (552)
314 KOG1586 Protein required for f 89.2 6.9 0.00015 32.9 10.0 21 317-337 164-184 (288)
315 PF06552 TOM20_plant: Plant sp 88.8 5.8 0.00013 31.9 9.1 117 358-479 7-137 (186)
316 KOG4570 Uncharacterized conser 88.7 3.6 7.8E-05 36.1 8.4 51 145-195 114-164 (418)
317 KOG4648 Uncharacterized conser 88.5 1.9 4E-05 38.2 6.7 52 385-443 105-157 (536)
318 KOG1586 Protein required for f 88.3 14 0.00031 31.1 18.3 18 388-405 165-182 (288)
319 PF02259 FAT: FAT domain; Int 88.3 21 0.00045 32.9 22.6 65 236-300 145-212 (352)
320 cd00923 Cyt_c_Oxidase_Va Cytoc 88.2 4.8 0.0001 28.4 7.2 45 360-404 25-69 (103)
321 PF13374 TPR_10: Tetratricopep 88.2 1.4 3.1E-05 25.2 4.4 28 378-405 3-30 (42)
322 KOG2066 Vacuolar assembly/sort 88.1 31 0.00068 34.7 16.0 23 68-90 511-533 (846)
323 PF13762 MNE1: Mitochondrial s 87.5 12 0.00025 29.1 10.2 86 411-496 31-127 (145)
324 KOG0991 Replication factor C, 87.4 17 0.00036 30.8 11.2 37 449-485 237-274 (333)
325 PF13181 TPR_8: Tetratricopept 87.2 1.2 2.6E-05 24.2 3.4 27 379-405 3-29 (34)
326 PF07719 TPR_2: Tetratricopept 86.7 2.4 5.2E-05 22.9 4.5 31 418-448 2-32 (34)
327 KOG2471 TPR repeat-containing 86.6 29 0.00064 32.9 14.0 107 316-429 249-381 (696)
328 PF07163 Pex26: Pex26 protein; 86.6 21 0.00046 31.1 13.7 122 244-365 42-181 (309)
329 PF13374 TPR_10: Tetratricopep 86.5 2.2 4.7E-05 24.4 4.5 27 132-158 3-29 (42)
330 KOG4077 Cytochrome c oxidase, 86.0 12 0.00027 27.9 9.7 59 396-459 68-126 (149)
331 PF06552 TOM20_plant: Plant sp 85.8 6.6 0.00014 31.6 7.8 94 394-495 8-124 (186)
332 PF11207 DUF2989: Protein of u 85.6 8.3 0.00018 31.7 8.5 72 148-220 123-197 (203)
333 PF00515 TPR_1: Tetratricopept 85.5 3.3 7E-05 22.4 4.6 26 240-265 4-29 (34)
334 PF13174 TPR_6: Tetratricopept 84.8 2.1 4.5E-05 22.9 3.6 25 423-447 6-30 (33)
335 KOG2063 Vacuolar assembly/sort 84.8 54 0.0012 34.2 17.8 115 240-354 507-638 (877)
336 COG1747 Uncharacterized N-term 84.7 38 0.00082 32.4 23.5 27 346-372 209-235 (711)
337 KOG4234 TPR repeat-containing 84.6 14 0.0003 30.4 9.1 54 351-405 143-196 (271)
338 COG4455 ImpE Protein of avirul 84.5 10 0.00022 31.6 8.5 77 309-386 3-81 (273)
339 KOG0890 Protein kinase of the 84.5 87 0.0019 36.4 26.3 153 67-225 1388-1542(2382)
340 COG2909 MalT ATP-dependent tra 84.4 53 0.0011 33.8 24.5 225 142-367 426-684 (894)
341 PRK09687 putative lyase; Provi 83.6 32 0.00069 30.6 26.8 136 200-352 141-277 (280)
342 KOG2396 HAT (Half-A-TPR) repea 83.4 43 0.00093 32.0 34.7 89 46-136 87-179 (568)
343 COG4455 ImpE Protein of avirul 83.3 11 0.00025 31.3 8.3 73 65-139 4-80 (273)
344 TIGR02561 HrpB1_HrpK type III 81.8 23 0.00049 27.6 11.8 51 389-446 22-73 (153)
345 PF07575 Nucleopor_Nup85: Nup8 81.6 61 0.0013 32.4 18.3 146 213-369 309-465 (566)
346 COG3947 Response regulator con 81.3 37 0.00081 29.9 16.3 73 346-419 283-355 (361)
347 PF07721 TPR_4: Tetratricopept 81.0 2.6 5.6E-05 21.4 2.7 21 135-155 5-25 (26)
348 KOG0890 Protein kinase of the 80.8 1.2E+02 0.0026 35.4 27.1 116 137-262 1389-1508(2382)
349 PF07163 Pex26: Pex26 protein; 80.7 16 0.00035 31.7 8.7 87 173-260 90-181 (309)
350 PF10255 Paf67: RNA polymerase 80.5 37 0.00079 31.8 11.6 63 202-264 123-191 (404)
351 KOG4648 Uncharacterized conser 80.5 16 0.00034 32.7 8.8 84 278-370 103-193 (536)
352 PF13181 TPR_8: Tetratricopept 80.4 6.1 0.00013 21.3 4.4 27 133-159 3-29 (34)
353 PF00637 Clathrin: Region in C 80.1 1.3 2.9E-05 34.5 2.2 12 239-250 44-55 (143)
354 PF13174 TPR_6: Tetratricopept 79.8 4.5 9.6E-05 21.5 3.7 24 243-266 6-29 (33)
355 KOG0403 Neoplastic transformat 79.8 54 0.0012 30.8 17.4 91 381-482 513-615 (645)
356 KOG4507 Uncharacterized conser 79.6 21 0.00046 34.5 9.8 101 235-336 605-705 (886)
357 PF02284 COX5A: Cytochrome c o 79.4 21 0.00045 25.7 9.6 43 221-264 30-72 (108)
358 PRK15180 Vi polysaccharide bio 78.8 61 0.0013 30.8 27.4 124 69-195 296-420 (831)
359 PHA02875 ankyrin repeat protei 78.4 63 0.0014 30.7 17.2 15 451-465 348-362 (413)
360 KOG1464 COP9 signalosome, subu 77.2 48 0.001 28.7 21.8 282 159-451 19-337 (440)
361 PF10579 Rapsyn_N: Rapsyn N-te 76.3 11 0.00023 25.6 5.1 47 389-440 18-66 (80)
362 PF10345 Cohesin_load: Cohesin 76.2 93 0.002 31.5 30.7 48 354-401 373-428 (608)
363 TIGR03504 FimV_Cterm FimV C-te 76.0 6.3 0.00014 23.2 3.6 24 137-160 5-28 (44)
364 KOG4234 TPR repeat-containing 75.7 45 0.00097 27.6 11.2 97 352-455 105-206 (271)
365 KOG4642 Chaperone-dependent E3 75.4 30 0.00066 29.4 8.6 81 355-444 23-105 (284)
366 KOG2471 TPR repeat-containing 75.3 78 0.0017 30.2 14.4 113 352-465 250-383 (696)
367 KOG4507 Uncharacterized conser 75.1 24 0.00051 34.3 8.8 132 324-462 590-721 (886)
368 KOG2034 Vacuolar sorting prote 75.0 1.1E+02 0.0023 31.7 27.6 258 66-359 362-645 (911)
369 smart00028 TPR Tetratricopepti 74.9 6.4 0.00014 20.1 3.6 27 379-405 3-29 (34)
370 KOG2908 26S proteasome regulat 74.0 51 0.0011 29.7 10.0 52 108-159 85-143 (380)
371 COG4785 NlpI Lipoprotein NlpI, 73.7 53 0.0012 27.6 18.1 64 272-336 99-162 (297)
372 PF04097 Nic96: Nup93/Nic96; 73.5 1.1E+02 0.0024 31.0 20.5 43 136-179 116-158 (613)
373 PF13762 MNE1: Mitochondrial s 73.4 28 0.00062 27.1 7.6 82 133-214 41-128 (145)
374 PF04762 IKI3: IKI3 family; I 73.1 99 0.0021 33.1 13.8 61 66-126 698-761 (928)
375 smart00386 HAT HAT (Half-A-TPR 72.8 10 0.00023 19.8 4.0 29 431-459 1-29 (33)
376 PF10579 Rapsyn_N: Rapsyn N-te 72.7 15 0.00033 24.9 5.1 49 354-402 18-68 (80)
377 PF10345 Cohesin_load: Cohesin 71.7 1.2E+02 0.0026 30.7 34.5 410 63-475 60-603 (608)
378 PF11848 DUF3368: Domain of un 71.6 14 0.0003 22.3 4.5 33 461-493 12-46 (48)
379 cd08819 CARD_MDA5_2 Caspase ac 71.3 28 0.00061 24.2 6.3 66 81-151 21-86 (88)
380 TIGR03504 FimV_Cterm FimV C-te 71.1 8.5 0.00018 22.7 3.4 25 348-372 5-29 (44)
381 KOG4642 Chaperone-dependent E3 70.3 69 0.0015 27.4 11.3 119 107-227 19-143 (284)
382 PF13934 ELYS: Nuclear pore co 69.5 71 0.0015 27.3 13.9 22 103-124 113-134 (226)
383 KOG0292 Vesicle coat complex C 69.5 35 0.00075 35.0 8.9 133 104-265 649-781 (1202)
384 PF11817 Foie-gras_1: Foie gra 69.4 31 0.00068 29.9 8.1 62 380-441 181-242 (247)
385 PF14689 SPOB_a: Sensor_kinase 68.8 14 0.0003 23.8 4.3 30 130-159 22-51 (62)
386 KOG4077 Cytochrome c oxidase, 67.1 50 0.0011 24.9 7.2 45 361-405 68-112 (149)
387 KOG4567 GTPase-activating prot 66.6 80 0.0017 28.1 9.5 43 186-228 263-305 (370)
388 KOG2034 Vacuolar sorting prote 66.3 1.7E+02 0.0037 30.4 25.0 266 104-402 364-652 (911)
389 PF11846 DUF3366: Domain of un 66.2 34 0.00073 28.3 7.4 37 412-448 139-175 (193)
390 PHA00425 DNA packaging protein 66.1 28 0.0006 23.3 5.1 34 432-465 14-47 (88)
391 PF11846 DUF3366: Domain of un 66.1 19 0.00041 29.8 5.9 32 163-194 141-172 (193)
392 KOG0376 Serine-threonine phosp 65.8 8.7 0.00019 36.0 4.0 50 354-405 16-66 (476)
393 COG5108 RPO41 Mitochondrial DN 65.7 28 0.00061 34.3 7.3 49 382-433 33-81 (1117)
394 PRK10941 hypothetical protein; 65.6 94 0.002 27.4 10.1 57 348-405 187-243 (269)
395 PRK10941 hypothetical protein; 65.1 86 0.0019 27.7 9.8 61 242-303 186-246 (269)
396 KOG0403 Neoplastic transformat 64.6 1.3E+02 0.0028 28.5 17.7 58 347-405 514-571 (645)
397 PF11123 DNA_Packaging_2: DNA 64.3 21 0.00047 23.6 4.4 34 432-465 12-45 (82)
398 COG0735 Fur Fe2+/Zn2+ uptake r 64.2 65 0.0014 25.2 8.1 62 153-215 8-69 (145)
399 PF04910 Tcf25: Transcriptiona 64.0 1.3E+02 0.0027 28.1 20.6 91 313-405 109-221 (360)
400 PF14853 Fis1_TPR_C: Fis1 C-te 64.0 30 0.00064 21.5 4.9 35 382-423 6-40 (53)
401 TIGR02508 type_III_yscG type I 63.7 52 0.0011 23.6 6.9 49 141-195 49-97 (115)
402 PHA02875 ankyrin repeat protei 63.6 1.4E+02 0.003 28.4 13.1 15 360-374 298-312 (413)
403 PF00244 14-3-3: 14-3-3 protei 62.9 78 0.0017 27.3 9.1 59 242-300 6-65 (236)
404 KOG3364 Membrane protein invol 62.7 35 0.00076 26.1 5.9 71 59-129 29-102 (149)
405 COG2137 OraA Uncharacterized p 62.3 83 0.0018 25.5 10.1 90 28-122 36-125 (174)
406 KOG3807 Predicted membrane pro 62.2 1.2E+02 0.0026 27.3 10.4 59 205-263 279-337 (556)
407 PF08424 NRDE-2: NRDE-2, neces 61.2 1.3E+02 0.0029 27.4 14.4 47 148-195 48-94 (321)
408 PF11848 DUF3368: Domain of un 60.5 35 0.00076 20.5 5.1 32 142-173 13-44 (48)
409 PRK10564 maltose regulon perip 59.9 20 0.00044 31.7 4.9 40 129-168 254-294 (303)
410 KOG0686 COP9 signalosome, subu 58.7 1.6E+02 0.0034 27.6 14.1 62 239-301 152-216 (466)
411 PF11663 Toxin_YhaV: Toxin wit 58.6 18 0.0004 27.4 3.9 28 180-209 109-136 (140)
412 PRK14136 recX recombination re 58.3 1.4E+02 0.003 26.7 10.0 39 31-69 181-219 (309)
413 cd00280 TRFH Telomeric Repeat 58.3 60 0.0013 26.4 6.8 42 136-180 116-157 (200)
414 PRK11619 lytic murein transgly 58.0 2.2E+02 0.0048 29.0 30.9 79 358-444 295-373 (644)
415 PF10366 Vps39_1: Vacuolar sor 57.6 74 0.0016 23.4 7.9 27 274-300 41-67 (108)
416 PF09477 Type_III_YscG: Bacter 56.8 75 0.0016 23.2 7.7 80 75-161 19-99 (116)
417 KOG2396 HAT (Half-A-TPR) repea 56.7 1.9E+02 0.0042 27.9 24.0 242 186-445 302-558 (568)
418 PF12862 Apc5: Anaphase-promot 56.2 70 0.0015 22.6 8.1 20 426-445 50-69 (94)
419 KOG2659 LisH motif-containing 56.1 1.3E+02 0.0027 25.6 9.9 69 57-125 21-91 (228)
420 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 90 0.0019 23.7 7.7 43 149-191 81-124 (126)
421 PF04190 DUF410: Protein of un 55.4 1.5E+02 0.0032 26.1 16.1 83 235-336 88-170 (260)
422 PF09670 Cas_Cas02710: CRISPR- 55.3 1.8E+02 0.0039 27.3 10.7 57 138-195 138-198 (379)
423 PF11838 ERAP1_C: ERAP1-like C 55.2 1.6E+02 0.0035 26.6 23.2 28 114-141 56-83 (324)
424 PF04190 DUF410: Protein of un 54.8 1.5E+02 0.0032 26.1 15.4 20 386-405 150-169 (260)
425 PF08424 NRDE-2: NRDE-2, neces 53.6 1.8E+02 0.0039 26.6 16.7 120 324-445 48-182 (321)
426 COG2909 MalT ATP-dependent tra 53.3 2.9E+02 0.0063 28.9 26.5 224 176-402 425-684 (894)
427 PF14689 SPOB_a: Sensor_kinase 53.3 29 0.00063 22.3 3.8 16 350-365 31-46 (62)
428 KOG4567 GTPase-activating prot 53.0 1E+02 0.0022 27.5 7.9 58 151-213 263-320 (370)
429 PRK09857 putative transposase; 52.7 1.2E+02 0.0025 27.3 8.7 65 420-484 209-275 (292)
430 COG0735 Fur Fe2+/Zn2+ uptake r 52.4 72 0.0016 24.9 6.6 62 49-112 8-69 (145)
431 PF11663 Toxin_YhaV: Toxin wit 52.3 18 0.0004 27.5 3.0 29 355-385 108-136 (140)
432 PF11817 Foie-gras_1: Foie gra 51.1 62 0.0014 28.1 6.7 57 171-227 183-244 (247)
433 PF00244 14-3-3: 14-3-3 protei 50.7 1.6E+02 0.0036 25.3 12.8 61 205-266 5-66 (236)
434 KOG0687 26S proteasome regulat 50.4 2E+02 0.0042 26.1 14.9 98 237-336 104-210 (393)
435 KOG0376 Serine-threonine phosp 50.1 55 0.0012 31.0 6.3 103 316-428 13-116 (476)
436 TIGR02508 type_III_yscG type I 49.8 96 0.0021 22.4 7.4 79 77-162 20-99 (115)
437 cd08819 CARD_MDA5_2 Caspase ac 49.3 89 0.0019 21.8 6.8 12 251-262 50-61 (88)
438 KOG3677 RNA polymerase I-assoc 49.1 2.3E+02 0.0051 26.6 10.0 167 203-370 237-412 (525)
439 PRK10564 maltose regulon perip 49.1 27 0.00059 30.9 4.0 42 163-204 253-295 (303)
440 cd00280 TRFH Telomeric Repeat 48.8 1.5E+02 0.0032 24.3 12.7 67 147-216 85-158 (200)
441 KOG4279 Serine/threonine prote 48.6 2.7E+02 0.0059 28.5 10.8 116 255-370 181-315 (1226)
442 PF12862 Apc5: Anaphase-promot 47.8 98 0.0021 21.9 6.6 53 353-405 9-69 (94)
443 PRK11639 zinc uptake transcrip 47.3 1.5E+02 0.0033 23.9 8.5 60 157-217 17-76 (169)
444 PRK11619 lytic murein transgly 47.1 3.3E+02 0.0072 27.8 36.0 76 104-183 105-180 (644)
445 KOG1308 Hsp70-interacting prot 46.8 16 0.00035 32.8 2.3 89 110-200 126-216 (377)
446 COG5108 RPO41 Mitochondrial DN 46.8 1.4E+02 0.003 29.9 8.5 91 277-370 33-131 (1117)
447 PF10366 Vps39_1: Vacuolar sor 46.0 1.2E+02 0.0026 22.3 7.5 26 240-265 42-67 (108)
448 PF07575 Nucleopor_Nup85: Nup8 45.9 49 0.0011 33.1 5.9 58 99-156 406-463 (566)
449 PRK09462 fur ferric uptake reg 45.7 1.5E+02 0.0032 23.3 8.4 61 156-217 7-68 (148)
450 KOG0128 RNA-binding protein SA 45.5 3.7E+02 0.0081 27.9 29.3 199 60-264 111-339 (881)
451 PF09868 DUF2095: Uncharacteri 44.5 63 0.0014 23.7 4.5 34 67-102 66-99 (128)
452 PRK00117 recX recombination re 43.9 1.6E+02 0.0035 23.3 9.8 64 27-92 26-89 (157)
453 KOG0686 COP9 signalosome, subu 43.2 2.9E+02 0.0062 26.0 13.2 63 273-335 151-215 (466)
454 PF10255 Paf67: RNA polymerase 42.9 2.1E+02 0.0046 27.0 9.0 24 273-296 165-188 (404)
455 PRK07003 DNA polymerase III su 42.7 4.2E+02 0.0091 27.7 12.3 35 130-165 245-279 (830)
456 KOG2062 26S proteasome regulat 41.9 4.1E+02 0.0088 27.3 25.1 119 352-477 511-634 (929)
457 PF14853 Fis1_TPR_C: Fis1 C-te 41.8 85 0.0018 19.5 4.7 32 422-453 6-37 (53)
458 PRK13800 putative oxidoreducta 41.7 4.8E+02 0.01 28.1 27.6 248 164-446 633-881 (897)
459 PF09454 Vps23_core: Vps23 cor 41.4 83 0.0018 20.5 4.4 50 339-389 5-54 (65)
460 PRK14958 DNA polymerase III su 41.2 3.6E+02 0.0079 26.6 12.1 33 132-165 247-279 (509)
461 PF10475 DUF2450: Protein of u 41.0 1.6E+02 0.0034 26.4 7.8 115 313-438 104-218 (291)
462 PRK15180 Vi polysaccharide bio 40.8 3.4E+02 0.0074 26.1 24.6 122 141-267 299-421 (831)
463 KOG1114 Tripeptidyl peptidase 40.8 4.8E+02 0.01 27.8 15.2 81 393-478 1212-1295(1304)
464 PRK14956 DNA polymerase III su 40.3 3.6E+02 0.0079 26.3 11.0 32 133-164 250-281 (484)
465 KOG2659 LisH motif-containing 39.9 2.4E+02 0.0051 24.1 12.3 110 186-300 13-131 (228)
466 cd07153 Fur_like Ferric uptake 39.6 1.2E+02 0.0026 22.4 5.9 42 174-215 8-49 (116)
467 cd07153 Fur_like Ferric uptake 38.4 83 0.0018 23.2 4.9 49 136-184 5-53 (116)
468 cd02682 MIT_AAA_Arch MIT: doma 38.1 99 0.0021 20.9 4.5 42 378-419 7-48 (75)
469 PF03745 DUF309: Domain of unk 38.0 1.1E+02 0.0023 19.8 4.6 17 248-264 10-26 (62)
470 KOG2062 26S proteasome regulat 37.5 4.8E+02 0.01 26.9 14.4 123 210-335 510-634 (929)
471 PF09454 Vps23_core: Vps23 cor 36.6 1.2E+02 0.0026 19.8 4.7 49 129-178 6-54 (65)
472 KOG1308 Hsp70-interacting prot 36.5 19 0.00041 32.3 1.3 89 249-339 126-214 (377)
473 KOG2908 26S proteasome regulat 36.0 3.4E+02 0.0075 24.8 10.6 19 426-444 124-142 (380)
474 COG4003 Uncharacterized protei 35.9 1.1E+02 0.0024 20.9 4.3 27 67-93 36-62 (98)
475 PF12926 MOZART2: Mitotic-spin 35.8 1.5E+02 0.0033 20.6 6.7 41 152-192 29-69 (88)
476 PF01475 FUR: Ferric uptake re 34.9 1.1E+02 0.0024 22.8 5.1 45 171-215 12-56 (120)
477 KOG2297 Predicted translation 34.7 3.4E+02 0.0074 24.4 17.1 238 197-477 107-347 (412)
478 PF11768 DUF3312: Protein of u 34.6 4.6E+02 0.01 25.9 11.9 59 204-265 411-472 (545)
479 COG5187 RPN7 26S proteasome re 34.5 3.4E+02 0.0073 24.2 13.0 103 232-336 110-221 (412)
480 KOG0687 26S proteasome regulat 34.4 3.6E+02 0.0078 24.6 16.7 98 308-407 105-211 (393)
481 COG2178 Predicted RNA-binding 33.8 2.8E+02 0.006 23.0 9.6 18 428-445 132-149 (204)
482 PF02847 MA3: MA3 domain; Int 33.7 1.5E+02 0.0032 21.7 5.6 19 244-262 9-27 (113)
483 PF01475 FUR: Ferric uptake re 33.5 81 0.0018 23.5 4.2 50 134-183 10-59 (120)
484 PF09986 DUF2225: Uncharacteri 33.5 3E+02 0.0065 23.3 9.0 66 379-446 120-194 (214)
485 PRK12798 chemotaxis protein; R 33.3 4.3E+02 0.0093 25.1 19.6 191 105-302 88-287 (421)
486 KOG3807 Predicted membrane pro 33.2 3.8E+02 0.0081 24.4 11.8 55 172-228 281-338 (556)
487 PF08311 Mad3_BUB1_I: Mad3/BUB 32.8 2.2E+02 0.0048 21.6 8.9 23 419-441 101-123 (126)
488 KOG1114 Tripeptidyl peptidase 32.8 6.4E+02 0.014 27.0 13.1 81 216-298 1211-1292(1304)
489 KOG2582 COP9 signalosome, subu 32.7 4.1E+02 0.0088 24.6 15.3 249 77-372 74-346 (422)
490 PRK14956 DNA polymerase III su 32.2 4E+02 0.0087 26.0 9.2 15 144-158 213-227 (484)
491 PHA03100 ankyrin repeat protei 31.5 4.9E+02 0.011 25.2 13.6 233 48-296 49-304 (480)
492 PRK08691 DNA polymerase III su 31.4 6.1E+02 0.013 26.3 12.4 32 133-165 248-279 (709)
493 PF04090 RNA_pol_I_TF: RNA pol 30.8 3.2E+02 0.0069 22.8 7.8 61 417-477 41-104 (199)
494 KOG0530 Protein farnesyltransf 30.7 3.8E+02 0.0081 23.6 19.1 91 147-241 94-185 (318)
495 KOG4279 Serine/threonine prote 30.5 6.3E+02 0.014 26.2 14.9 19 318-336 298-316 (1226)
496 COG0790 FOG: TPR repeat, SEL1 30.3 3.9E+02 0.0085 23.7 19.4 147 74-228 53-218 (292)
497 PF01335 DED: Death effector d 30.2 1.8E+02 0.0039 20.0 5.2 42 79-122 37-78 (84)
498 PLN03025 replication factor C 30.1 4.3E+02 0.0092 24.1 10.6 84 359-445 161-252 (319)
499 PF05944 Phage_term_smal: Phag 30.1 2.6E+02 0.0056 21.5 6.6 31 63-93 49-79 (132)
500 PF15297 CKAP2_C: Cytoskeleton 29.9 3.1E+02 0.0066 25.2 7.5 43 133-175 142-184 (353)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-67 Score=523.07 Aligned_cols=462 Identities=13% Similarity=0.142 Sum_probs=428.6
Q ss_pred cccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCC-CCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchh
Q 010994 23 YTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGN-KVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDH 101 (496)
Q Consensus 23 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (496)
.++...+..++..+.+.|+.. .+..+++.|.+.+. +++...++.++..|.+.|.+++|+.+|+.|.. ++..++
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHH
Confidence 455667778888888877744 45568999988875 57788888999999999999999999999875 467888
Q ss_pred hhhhhHHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 010994 102 AVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT 179 (496)
Q Consensus 102 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 179 (496)
..++..|++.|+++.|.++|+.|.+.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 899999999999999999999998874 799999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010994 180 GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES-QPHIVLDWSTYASAAHFYIKANLIDKASD 258 (496)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 258 (496)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ..++.||..+|+.+|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999972 26788999999999999999999999999
Q ss_pred HHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010994 259 VLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN 338 (496)
Q Consensus 259 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (496)
+|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|...+..||..+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994 339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK 418 (496)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 418 (496)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-----~Gi~Pd~~ 755 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-----LGLCPNTI 755 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----cCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh----C-------------------C--CcHHHHH
Q 010994 419 VITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQMYHAFIKANIR----N-------------------G--KGVDELL 472 (496)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~----~-------------------g--~~a~~~~ 472 (496)
||+.++.+|++.|++++|.++++.|.+ +..||..+|++++..|.+ . + ++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 999999999999999999999998877 689999999999876442 1 1 4689999
Q ss_pred HHHHhCCCCCChhHHHHHHhhhc
Q 010994 473 DSMKADGIDEDEETKEILVCTME 495 (496)
Q Consensus 473 ~~m~~~g~~p~~~t~~~l~~~~~ 495 (496)
++|++.|+.||..||..++.+++
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999996654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.7e-66 Score=515.28 Aligned_cols=430 Identities=15% Similarity=0.193 Sum_probs=413.7
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA 136 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 136 (496)
...++...|..++..|++.|++++|+++|++|.+.+..+++...+..++..|.+.|..++|..+|+.|.. ||..+|+.
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~ 442 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNM 442 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHH
Confidence 4556788899999999999999999999999999986666666677788999999999999999999986 99999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--hcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994 217 LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEE--RLEQKDGIGYNFLISLYASLGNKSEVLRL 294 (496)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 294 (496)
+++|.++|++|. ..++.||..+|+.+|.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++
T Consensus 523 ~eeAl~lf~~M~-~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999 899999999999999999999999999999999976 57889999999999999999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994 295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374 (496)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (496)
|+.|...+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-cCCCCHHH
Q 010994 375 TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQM 453 (496)
Q Consensus 375 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ 453 (496)
||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.. +..||..+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-----~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKS-----IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999998 89999999999999999999999999999998876 68999999
Q ss_pred HHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhhh
Q 010994 454 YHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTM 494 (496)
Q Consensus 454 ~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~ 494 (496)
|+.++.+|++.| ++|.+++++|.+.|+.||..+|+.|+..|
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999 89999999999999999999999998643
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-63 Score=504.70 Aligned_cols=464 Identities=15% Similarity=0.123 Sum_probs=384.9
Q ss_pred cccccchhhhhhhhhhcccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 010994 7 LSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSD 86 (496)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 86 (496)
+..+.++|..+.+.+..++....+.|+..+++.|+... ...+++.| ..||..+|+.+|.+|++.|++++|+++|+
T Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~-A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~ 176 (857)
T PLN03077 102 VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH-AWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYH 176 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHH-HHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHH
Confidence 34455666666666666666666666666666655322 22344443 24556666666666666666666666666
Q ss_pred HHHhCCC----------------------------------CCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHH
Q 010994 87 WMNRKGI----------------------------------CVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQ 132 (496)
Q Consensus 87 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 132 (496)
.|...|. ..+++..++.++..|++.|+++.|..+|++|.. ||..
T Consensus 177 ~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~ 254 (857)
T PLN03077 177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCI 254 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcc
Confidence 6655441 223445566678888999999999999999875 7888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYG 212 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 212 (496)
+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 010994 213 ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL 292 (496)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 292 (496)
+.|++++|.++|++|. . ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 335 k~g~~~~A~~vf~~m~-~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 335 SLGSWGEAEKVFSRME-T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409 (857)
T ss_pred hcCCHHHHHHHHhhCC-C----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence 9999999999999996 3 6778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994 293 RLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (496)
++++.+...+..++..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +
T Consensus 410 ~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~ 484 (857)
T PLN03077 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T 484 (857)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C
Confidence 9999999998889999999999999999999999999998854 5888999999999999999999999999986 5
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 010994 373 KATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQ 452 (496)
Q Consensus 373 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 452 (496)
+.||..||+.++.+|++.|+.+.+.+++..+.+ .|+.+|..++++++.+|+++|++++|.++|+.+ ++|..
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-----~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~ 555 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLR-----TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVV 555 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-----hCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChh
Confidence 889999999999999999999999999888887 788888888888888888888888888888776 57888
Q ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhhhcC
Q 010994 453 MYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTMEK 496 (496)
Q Consensus 453 ~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~k 496 (496)
+||.+|.+|++.| ++|+++|++|.+.|+.||..||+.++.+|.+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 8888888888888 7888888888888888888888888887753
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-63 Score=505.07 Aligned_cols=460 Identities=16% Similarity=0.177 Sum_probs=426.4
Q ss_pred cccccchhhhhhhhhhcccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 010994 7 LSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSD 86 (496)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 86 (496)
+..++++|..+.+.|+.|++.+++.|+..+++.|+.. .+..+++.| ..+|..+|+.+|.+|++.|++++|+++|+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~-~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV-SARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH-HHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 4567788888888899999999999999999888744 344566666 46788999999999999999999999999
Q ss_pred HHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010994 87 WMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL 164 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 164 (496)
+|.+.+ ..++..++..++..|++.|+.+.|.+++..+...+ ||..+||+||.+|++.|++++|.++|++|.. |
T Consensus 278 ~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 352 (857)
T PLN03077 278 TMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K 352 (857)
T ss_pred HHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C
Confidence 999988 55677788888999999999999999999988764 7999999999999999999999999999964 5
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010994 165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAA 244 (496)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 244 (496)
|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+. +.|+.|+..+|+.|+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~Li 431 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE-RKGLISYVVVANALI 431 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH-HhCCCcchHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHH
Q 010994 245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHE 324 (496)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 324 (496)
.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|+.+|++|... ..||..||+.++.+|++.|+++
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999975 378899999999999999999999999999864 6799999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 325 EAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404 (496)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 404 (496)
.+.+++..+.+.|+.+|..++++++.+|++.|++++|.++|+.+ .||..+||++|.+|++.|+.++|+++|++|.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 4799999999999999999999999999999
Q ss_pred HhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCC
Q 010994 405 SVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT--VIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGI 480 (496)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~ 480 (496)
+ .|+.||..||+.++.+|++.|++++|.++|+.|.+ +..|+..+|+.++++|++.| ++|.+++++|. +
T Consensus 582 ~-----~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~ 653 (857)
T PLN03077 582 E-----SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---I 653 (857)
T ss_pred H-----cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---C
Confidence 8 89999999999999999999999999999999984 58899999999999999999 89999999994 8
Q ss_pred CCChhHHHHHHhhhc
Q 010994 481 DEDEETKEILVCTME 495 (496)
Q Consensus 481 ~p~~~t~~~l~~~~~ 495 (496)
.||..+|+.|+.+|.
T Consensus 654 ~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 654 TPDPAVWGALLNACR 668 (857)
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999999999874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-60 Score=475.88 Aligned_cols=451 Identities=14% Similarity=0.147 Sum_probs=412.1
Q ss_pred ccCCCcccHHhhhccCCCCCCCcHHHHHHHHHc-CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhh
Q 010994 24 TNRINKTTLYSIISPLGNPGTRIEPELDNWVKN-GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHA 102 (496)
Q Consensus 24 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (496)
.+..+++.++..+.+.++...+ ..+++.|... +..|+..+|+.++.+|.+.++++.|.+++..|.+.| ..+++.+++
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~A-l~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREA-LELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 3455788888999988876544 4477777665 478999999999999999999999999999999998 556788889
Q ss_pred hhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC
Q 010994 103 VQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY 182 (496)
Q Consensus 103 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 182 (496)
.++..|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 183 EKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK 262 (496)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 262 (496)
+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. . +|..+||.+|.+|++.|++++|.++|++
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-E----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-C----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 3 6788999999999999999999999999
Q ss_pred HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994 263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT 342 (496)
Q Consensus 263 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (496)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.+..++..+|+.++.+|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999988999999999999999999999999999985 3689
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
.+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ +.|+.|+..+|+.
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~----~~g~~p~~~~y~~ 467 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE----NHRIKPRAMHYAC 467 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hcCCCCCccchHh
Confidence 999999999999999999999999999999999999999999999999999999999999986 3589999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCC-hhHHHHHHhhhc
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDED-EETKEILVCTME 495 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~-~~t~~~l~~~~~ 495 (496)
++.+|++.|++++|.++++.+. ..|+..+|++|+.+|...| +.|..+++++.+ +.|+ ..+|..|+..+.
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence 9999999999999999988763 5789999999999999988 788888888864 5675 457888877654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.1e-60 Score=472.86 Aligned_cols=451 Identities=13% Similarity=0.130 Sum_probs=421.8
Q ss_pred cccchhhhhhhh-hhcccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 010994 9 TNTQIHNAVFSR-FYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDW 87 (496)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 87 (496)
.+.++...|... ++.|+..+++.++..+.+.+.. .....++..+.+.|..||..+|+.|+..|++.|++++|.++|+.
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSI-RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 344455556554 4789999999999999998764 34566888898999999999999999999999999999999999
Q ss_pred HHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010994 88 MNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS 165 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 165 (496)
|.+. +..+++.++..|++.|++++|..+|++|.+.+ ||..+|+.++.++++.|+.+.+.+++..+.+.|+.||
T Consensus 184 m~~~-----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 184 MPER-----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred CCCC-----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 9763 57789999999999999999999999998764 7899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010994 166 TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAH 245 (496)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (496)
..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|++|. ..|+.||..||+.++.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~-~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIMIR 333 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999995 4689999999999999999999999999998 8899999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 010994 246 FYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEE 325 (496)
Q Consensus 246 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (496)
+|++.|++++|.+++..|.+.|..||..+|+.++.+|++.|++++|.++|+.|.. +|..+|+.+|.+|++.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999998853 788999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh-cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 326 AEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE-KGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404 (496)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 404 (496)
|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 999999999999999999999999999999999999999999986 699999999999999999999999999999874
Q ss_pred HhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCC
Q 010994 405 SVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDE 482 (496)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p 482 (496)
++.|+..+|++++.+|...|+++.|..+++++.+..|.+..+|..|+..|++.| ++|.+++++|++.|+..
T Consensus 489 -------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 489 -------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred -------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 689999999999999999999999999999998777778899999999999999 89999999999999863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.5e-28 Score=252.85 Aligned_cols=426 Identities=11% Similarity=-0.005 Sum_probs=330.9
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC
Q 010994 49 ELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE 128 (496)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 128 (496)
+++.+.. ..+.+...+..+...+...|++++|.+.|+.+.+.. +..+.....+...+...|++++|...|+.+....
T Consensus 453 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 453 AAKKLEK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4444432 345566778888888888888888888888887754 2344555556677778888888888888887766
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH
Q 010994 129 K-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC 207 (496)
Q Consensus 129 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 207 (496)
| +..++..+...+.+.|++++|...++++.+.+ +.+...+..++..+...|++++|..+++.+.+. .+.+...|..+
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l 607 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLML 607 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHH
Confidence 6 57778888888888888888888888887664 336677778888888888888888888888765 34466778888
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCC
Q 010994 208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN 287 (496)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 287 (496)
..++...|++++|...|+++. +.+. .+...+..+..++...|++++|...|+++.+..+ .+..++..++..+...|+
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLL-ALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 888888888888888888887 4443 4566777788888888888888888888876543 556778888888888888
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHH
Q 010994 288 KSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367 (496)
Q Consensus 288 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (496)
+++|.++++.+....+ .+...+..+...+...|++++|...++.+...+ |+..++..+...+.+.|++++|.+.+++
T Consensus 685 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888887777655 566777788888888899999999888888764 4446777788888888999999988888
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI 447 (496)
Q Consensus 368 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 447 (496)
+.+..+. +...+..+...|...|++++|.+.|+++++ ..+++...+..+...+...|+ ++|...++++....
T Consensus 762 ~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 762 WLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVK------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 8876544 777888888888889999999999999887 334567788888888888888 77888888887777
Q ss_pred CCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhhh
Q 010994 448 PMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTM 494 (496)
Q Consensus 448 ~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~ 494 (496)
|.++..+..+..++...| ++|..+++++.+.+-. |..++..+..++
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 881 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALAL 881 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Confidence 777888888888888888 7899999998886543 666666655544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.1e-27 Score=248.50 Aligned_cols=433 Identities=13% Similarity=0.101 Sum_probs=367.2
Q ss_pred cCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhh
Q 010994 25 NRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQ 104 (496)
Q Consensus 25 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 104 (496)
++..+..+...+...++... ....++...+ ..+.+...+..+...+...|++++|.+.|+.+.+..+ .+...+..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~-A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAK-AREAFEKALS-IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP--KNLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHH-HHHHHHHHHh-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHH
Confidence 34445555555555555333 3334444433 3345667788899999999999999999999998752 455667777
Q ss_pred hhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 105 LDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
...+.+.|+.++|..+|+++....| +...+..++..+.+.|++++|..+++.+.+.. +.+...|..+..++...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8888899999999999999988776 57788899999999999999999999998763 457889999999999999999
Q ss_pred cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
+|...|+++.+.. +.+...+..+..++...|++++|...++++. .... .+..++..++..+...|++++|..+++.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL-ELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998763 3356778889999999999999999999998 5543 56888999999999999999999999999
Q ss_pred HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 010994 264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR 343 (496)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 343 (496)
....+ .+...+..+...+...|++++|...|+.+....+ +..++..++.++.+.|++++|...++.+.+.. +.+..
T Consensus 696 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 696 QKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 88764 6777888999999999999999999998887764 44778889999999999999999999998874 44778
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI 423 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 423 (496)
.+..+...|...|++++|...|+++.+.++. +...++.+...+...|+ ++|+..++++.. -.+-+..++..+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~------~~~~~~~~~~~~ 843 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALK------LAPNIPAILDTL 843 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHh------hCCCCcHHHHHH
Confidence 8899999999999999999999999988654 88899999999999999 889999999987 223345677788
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 424 LSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
...+...|++++|..+++++.+..|.++.++..++.++.+.| ++|.+++++|.+
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 889999999999999999999888889999999999999999 899999999863
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.1e-21 Score=176.14 Aligned_cols=402 Identities=13% Similarity=0.096 Sum_probs=308.3
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCC--------------------------------CCCcchhhhhhhHHHhhc
Q 010994 65 LQRIIRDLRKRKRFSQALEVSDWMNRKGIC--------------------------------VFAPCDHAVQLDLIGRVH 112 (496)
Q Consensus 65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~ 112 (496)
...|.....+.|++++|.+.-...-+.+.. +.-.+.+..+...+...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 456667777888888888877666655420 011223333445555667
Q ss_pred CHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH-HHHHHHHHHhcCCCCcHHHHHH
Q 010994 113 GFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLT-YNDIMCLYSKTGQYEKVPDVLT 190 (496)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~ 190 (496)
+++.|+..++.+.+..|+ +..|..+..++...|+.+.|...|.+..+. .|+... ...+....-..|+.++|...|.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 777777777777766663 666777777777777777777777666664 333322 2233334445667777777777
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 010994 191 EMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269 (496)
Q Consensus 191 ~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 269 (496)
+.++. .|. .+.|..|...+-..|+...|++.|++.. +.++ --...|-.|...|...+.+++|...|.+.....+
T Consensus 209 kAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-kldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp- 283 (966)
T KOG4626|consen 209 KAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-KLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP- 283 (966)
T ss_pred HHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh-cCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-
Confidence 66654 232 3557777778888899999999998887 5443 3356788899999999999999999998776432
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
....++..+...|...|..+.|+..|++..+..+ .-...|+.+..++-..|++.+|.+.+.+...... ......+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHH
Confidence 4567888888899999999999999998888765 4457899999999999999999999999988743 2456778899
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHh
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLG 428 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 428 (496)
..|...|.++.|..+|....+-.+. =...++.|...|-++|++++|+..|++++. ++|+- ..++.+...|.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-------I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR-------IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh-------cCchHHHHHHhcchHHH
Confidence 9999999999999999998885332 345789999999999999999999999986 88986 68999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChh
Q 010994 429 DEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEE 485 (496)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~ 485 (496)
..|+...|.+.+.+...-.|.-...++.|...|...| .+|++-+++..+ ++||..
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 9999999999999888766666788999999999999 899999999877 677764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.2e-22 Score=188.96 Aligned_cols=288 Identities=13% Similarity=0.093 Sum_probs=123.3
Q ss_pred hcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCCCcHH
Q 010994 111 VHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS---TLTYNDIMCLYSKTGQYEKVP 186 (496)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~ 186 (496)
.|++++|...|.++.+.+| +..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++++|.
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444444444444444333 233444555555555555555555555444321111 123444444455555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 187 DVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLD----WSTYASAAHFYIKANLIDKASDVLKK 262 (496)
Q Consensus 187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~ 262 (496)
.+|+++.+.. +++..++..++..+.+.|++++|.+.++.+. +.+..+. ...+..+...+.+.|++++|...|++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555544431 1233444444455555555555555554444 2221111 11223334444444555555555544
Q ss_pred HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994 263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT 342 (496)
Q Consensus 263 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (496)
+.+..+ .+...+..+...+.+.|++++|.++++.+....+.....++..++.+|...|++++|...++.+.+. .|+.
T Consensus 206 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 282 (389)
T PRK11788 206 ALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA 282 (389)
T ss_pred HHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 443221 2223344444444444455555544444443322111233444444444444444444444444443 2233
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD---AGKTERGFQCMKAALS 405 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 405 (496)
..+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+++++++
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 33344444444444444444444444433 2344444444444332 2244444444444443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=7.4e-22 Score=177.25 Aligned_cols=386 Identities=14% Similarity=0.084 Sum_probs=325.4
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHH-H
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY-G 135 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~ 135 (496)
..+--..+|+.+...+-..|++++|+.+++.+++.. |...+.+..+...+...|+.+.|.+.|....+.+|+.... +
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s 188 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS 188 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence 345556789999999999999999999999999976 2455677777888889999999999999999999975443 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhc
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD-NFSYRICINSYGAR 214 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 214 (496)
-+...+...|+.++|...|.+..+... -=...|..|...+-..|+...|+..|++..+. .|+ ...|-.|...|...
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA 265 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH
Confidence 455666678999999999988877522 23567999999999999999999999999874 554 46788999999999
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994 215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL 294 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 294 (496)
+.++.|...+.+.. ...+ -...++..+...|...|++|-|+..|++..+..+ .=...|+.|..++-..|++.+|.+.
T Consensus 266 ~~~d~Avs~Y~rAl-~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 266 RIFDRAVSCYLRAL-NLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred hcchHHHHHHHHHH-hcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHH
Confidence 99999999998887 3332 4567788888999999999999999999887543 3357899999999999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994 295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374 (496)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (496)
|......++ ......+.+...+...|.+++|..+|....+-... -...++.|...|-++|++++|+..|++.+. +.
T Consensus 343 YnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 343 YNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 999888876 55677888999999999999999999998875322 245678899999999999999999999987 45
Q ss_pred CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 010994 375 TTP-NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQ 452 (496)
Q Consensus 375 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 452 (496)
|+. ..|+.+...|-..|+.+.|++.+.+++. +.|.- ..++.|...|...|++.+|.+-++...+..|.-+.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~-------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ-------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh-------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 554 5899999999999999999999999987 77764 68889999999999999999999988887666677
Q ss_pred HHHHHHHHH
Q 010994 453 MYHAFIKAN 461 (496)
Q Consensus 453 ~~~~l~~~~ 461 (496)
.|..++.++
T Consensus 492 A~cNllh~l 500 (966)
T KOG4626|consen 492 AYCNLLHCL 500 (966)
T ss_pred hhhHHHHHH
Confidence 777777664
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.4e-21 Score=183.53 Aligned_cols=295 Identities=14% Similarity=0.087 Sum_probs=199.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhc
Q 010994 138 LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD---NFSYRICINSYGAR 214 (496)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 214 (496)
...+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4455677888888888888887643 3566788888888888888888888888877532221 24567777888888
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc----chHHHHHHHHHhcCCHHH
Q 010994 215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG----IGYNFLISLYASLGNKSE 290 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 290 (496)
|+++.|..+|+++. +... .+..++..++..+.+.|++++|.+.++.+.+.++.++. ..+..+...+...|++++
T Consensus 121 g~~~~A~~~~~~~l-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLV-DEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHH-cCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 88888888888887 4433 56677788888888888888888888888765443221 134455666677777777
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
|...|+++....+ .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777776665543 334556666677777777777777777776553222234456666777777777777777777666
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHh
Q 010994 371 KGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD---EGSVQDVEAFVAALRT 445 (496)
Q Consensus 371 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 445 (496)
.. |+...+..++..+.+.|++++|..+++++++ ..|+..++..++..+.. .|+.+++..+++.+.+
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLR-------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 53 4444556666777777777777777777665 35666666666655543 3466666666665544
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.3e-20 Score=183.55 Aligned_cols=332 Identities=10% Similarity=-0.058 Sum_probs=274.8
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYV 142 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 142 (496)
-...++..+.+.|++++|+.+++...... +-.++....++......|+++.|...|+++....| +...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34567788899999999999999999876 35566677777777889999999999999999988 5788899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHH
Q 010994 143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI 222 (496)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 222 (496)
..|++++|...+++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998863 336778899999999999999999999988775432 22333333 34788999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH----HHHHHHHH
Q 010994 223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE----VLRLWDLE 298 (496)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~ 298 (496)
.++.+. .....++...+..+...+...|++++|...+++.....+ .+...+..+...+...|++++ |...|+..
T Consensus 199 ~~~~~l-~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 199 LARALL-PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHH-hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987 554334555556667889999999999999999987654 566788889999999999986 89999988
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHh
Q 010994 299 KTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPN 378 (496)
Q Consensus 299 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 378 (496)
....+ .+...+..+...+...|++++|...+++..+..+. +...+..+...|.+.|++++|...|+++.+.++. +..
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chH
Confidence 88765 56788999999999999999999999999987432 4556778889999999999999999999986533 333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+..+..++...|+.++|...|+++++
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445567789999999999999999987
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.8e-19 Score=177.96 Aligned_cols=398 Identities=10% Similarity=-0.017 Sum_probs=289.7
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHh
Q 010994 65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVR 143 (496)
Q Consensus 65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 143 (496)
+......+.+.|++++|+..|+..+... +++..+..+..++.+.|++++|+..++.+.+.+| +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4566778888999999999999999866 3466666677888899999999999999999888 47889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH-------------HHHHHHH------------C--C
Q 010994 144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD-------------VLTEMKA------------K--N 196 (496)
Q Consensus 144 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~-------------~~~~m~~------------~--~ 196 (496)
.|++++|+.-|......+-..+.. ...++..+.......++.. ....... . .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998887665432111111 1111111100000000000 0000000 0 0
Q ss_pred CCCCh-hhHHHHHHH---HhhcCChHHHHHHHHHhhcCCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 010994 197 IFPDN-FSYRICINS---YGARSDLEGMEIILREMESQPH-IV-LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK 270 (496)
Q Consensus 197 ~~p~~-~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 270 (496)
..++. ..+..+... ....+++++|.+.|+... +.+ .. .....++.+...+...|++++|+..|++..+..+ .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al-~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL-DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-R 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Confidence 01110 011111111 123467899999999988 433 22 3456678888899999999999999999887543 3
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994 271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII 350 (496)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (496)
+...|..+...+...|++++|...|+......+ .+...+..+...+...|++++|...|++..+... .+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 456788889999999999999999998877655 5567888899999999999999999999988742 35666778888
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-------H-HHHH
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-------K-VITS 422 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-------~-~~~~ 422 (496)
.+.+.|++++|+..|++..+..+. +...|+.+...+...|++++|+..|++++. +.|+. . .++.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~-------l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIE-------LEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHh-------cCCccccccccHHHHHHH
Confidence 899999999999999999886543 678899999999999999999999999987 23321 1 1122
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhC
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKAD 478 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 478 (496)
.+..+...|++++|.+++++.....|.+...+..++..+.+.| ++|+..|++..+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223344699999999999887777777788999999999999 8999999998764
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=6.9e-20 Score=192.59 Aligned_cols=394 Identities=9% Similarity=-0.023 Sum_probs=239.7
Q ss_pred HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCH---HHH-----------
Q 010994 69 IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTY---QTY----------- 134 (496)
Q Consensus 69 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~----------- 134 (496)
...+...|++++|+..|+...+.. |.++..+..+...+.+.|++++|+..|+++.+..|+. ..|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 334445556666666666555543 1234444445555555566666666665555544421 111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH--------
Q 010994 135 -GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR-------- 205 (496)
Q Consensus 135 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------- 205 (496)
......+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.|++..+... .+...+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 1123344555666666666655555422 2444455555555556666666666655554321 1222222
Q ss_pred ----------------------------------HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 010994 206 ----------------------------------ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251 (496)
Q Consensus 206 ----------------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 251 (496)
.+...+...|++++|++.+++.. ...+ -+...+..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~P-~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-ALDP-GSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcC
Confidence 23344445566666666666665 3332 23444555666666666
Q ss_pred ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc---------hhHHHHHHHHHhcCC
Q 010994 252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN---------RDYITMLEALMKLGE 322 (496)
Q Consensus 252 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~ 322 (496)
++++|...++++.+..+ .+...+..+...+...++.++|+..++.+......+.. ..+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 66666666666654332 23333333444455566666666666543221110110 112234556677788
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKA 402 (496)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 402 (496)
.++|..+++. .+.+...+..+...+.+.|++++|+..|++..+..+. +...+..++..+...|+.++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888877761 2445667778889999999999999999999987655 788899999999999999999999998
Q ss_pred HHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCC--CcHHHHHH
Q 010994 403 ALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM------NRQMYHAFIKANIRNG--KGVDELLD 473 (496)
Q Consensus 403 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g--~~a~~~~~ 473 (496)
+.+ ..| +......+..++...|++++|.++++.+....+. +...+..+...+...| ++|++.|+
T Consensus 663 ll~-------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 663 LPA-------TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred Hhc-------cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 875 344 4556677888888999999999999988775332 2346677788888888 79999988
Q ss_pred HHH-hCCCCC
Q 010994 474 SMK-ADGIDE 482 (496)
Q Consensus 474 ~m~-~~g~~p 482 (496)
+.. ..|+.|
T Consensus 736 ~Al~~~~~~~ 745 (1157)
T PRK11447 736 DAMVASGITP 745 (1157)
T ss_pred HHHhhcCCCC
Confidence 865 445543
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=3.9e-19 Score=186.99 Aligned_cols=416 Identities=11% Similarity=0.028 Sum_probs=272.6
Q ss_pred CcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCC---------------CCCcch---------
Q 010994 45 RIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGIC---------------VFAPCD--------- 100 (496)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~--------- 100 (496)
.....++.+.+. .+-+...+..+...+...|++++|++.++.+.+.... +..+..
T Consensus 165 ~A~~~L~~ll~~-~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNAD-YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 344456665443 3456677888999999999999999999988654210 000000
Q ss_pred -------hh---------------------hhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHH
Q 010994 101 -------HA---------------------VQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKAL 151 (496)
Q Consensus 101 -------~~---------------------~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 151 (496)
.. .....+...|++++|+..|+++....| +..++..+..++.+.|++++|+
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~ 323 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAV 323 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 00 012334567889999999999888877 6888888999999999999999
Q ss_pred HHHHHHHHCCCCC-ChhHHH------------HHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH
Q 010994 152 SHFRKMKEMGIAL-STLTYN------------DIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE 218 (496)
Q Consensus 152 ~~~~~m~~~g~~p-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 218 (496)
..|++..+..... +...|. .....+.+.|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 324 ~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 324 AQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 9999887764321 111121 22446678899999999999998863 234566777888899999999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc--------CccchHHHHHHHHHhcCCHHH
Q 010994 219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ--------KDGIGYNFLISLYASLGNKSE 290 (496)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~l~~~~~~~~~~~~ 290 (496)
+|++.|+++. +... .+...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++
T Consensus 403 eA~~~y~~aL-~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 403 AAERYYQQAL-RMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHH-HhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 9999999887 4443 33444444444442 23444554444432111000 001123333444445555555
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH-------------------------
Q 010994 291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP------------------------- 345 (496)
Q Consensus 291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------------- 345 (496)
|++.|+......+ .+...+..+...|.+.|++++|...++++.+.... +...+
T Consensus 480 A~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 480 AAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 5555555544433 23344444555555555555555555555443211 11111
Q ss_pred -------------------HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994 346 -------------------NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSV 406 (496)
Q Consensus 346 -------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 406 (496)
..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++++
T Consensus 558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~- 631 (1157)
T PRK11447 558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT- 631 (1157)
T ss_pred hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 1233445566666666666651 233556778889999999999999999999997
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhC
Q 010994 407 YVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKAD 478 (496)
Q Consensus 407 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 478 (496)
.-+.+...+..+...+...|++++|.+.++.+....|.+...+..+..++...| ++|.++++++...
T Consensus 632 -----~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 632 -----REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred -----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 233456788899999999999999999999888777778888888999999999 8999999998864
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=4.2e-19 Score=174.67 Aligned_cols=333 Identities=11% Similarity=0.000 Sum_probs=272.2
Q ss_pred hhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 010994 100 DHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK 178 (496)
Q Consensus 100 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 178 (496)
.....+..+.+.|+++.|..++..+....|+ ...+..++.+....|++++|...++++..... .+...+..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 3444556677889999999999999988774 66677777888889999999999999988743 367788999999999
Q ss_pred cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010994 179 TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASD 258 (496)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 258 (496)
.|++++|...++++.+.. +.+...+..+..++...|++++|...++.+. .... .+...+..+ ..+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~-~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA-QEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 999999999999998852 2346678888999999999999999999886 4433 233344333 34788999999999
Q ss_pred HHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 010994 259 VLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEE----AEKVLKEWE 334 (496)
Q Consensus 259 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~ 334 (496)
.++.+.+..+.++...+..+..++...|++++|...++......+ .+...+..+...+...|++++ |...++.+.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 999987765444555566667889999999999999998887765 566778889999999999986 899999998
Q ss_pred hcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC
Q 010994 335 LSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK 414 (496)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 414 (496)
+..+ .+...+..+...+...|++++|...+++..+..+. +...+..+...+.+.|++++|+..++++.. ..
T Consensus 278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~-------~~ 348 (656)
T PRK15174 278 QFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR-------EK 348 (656)
T ss_pred hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hC
Confidence 8743 35678889999999999999999999999987654 567788899999999999999999999987 45
Q ss_pred CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994 415 PDPK-VITSILSKLGDEGSVQDVEAFVAALRTVI 447 (496)
Q Consensus 415 p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 447 (496)
|+.. .+..+..++...|+.++|...|+...+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6543 34445677899999999999999877643
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1e-18 Score=175.68 Aligned_cols=419 Identities=9% Similarity=0.003 Sum_probs=316.9
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHH
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYG 135 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 135 (496)
..+.+.....-.+......|+.++|++++....... +.....+..+...+...|++++|...++++....| +...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 455666777788888999999999999999998733 24444577778889999999999999999988877 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS 215 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 215 (496)
.+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.... +...+..+..++...+
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 89999999999999999999998873 33566 888999999999999999999999986322 4555666778888899
Q ss_pred ChHHHHHHHHHhhcCCCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHhc-ccCccc-hH----
Q 010994 216 DLEGMEIILREMESQPHIVLDW------STYASAAHFYIK-----ANLI---DKASDVLKKAEERL-EQKDGI-GY---- 275 (496)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~~-~~~~~~-~~---- 275 (496)
+.+.|++.++... . .|+. .....++..... .+++ ++|+..++.+.+.. ..|+.. .+
T Consensus 165 ~~e~Al~~l~~~~-~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 165 LSAPALGAIDDAN-L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred ChHHHHHHHHhCC-C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 9999999998776 3 1322 122223333321 2234 77888888887542 123221 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CcccHHHHHHHH
Q 010994 276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY---DTRIPNAVIIGY 352 (496)
Q Consensus 276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 352 (496)
...+..+...|++++|+..|+.+..............+..+|...|++++|...|+.+.+..... .......+..++
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 11134556779999999999988876542122233335778999999999999999987653221 123455667788
Q ss_pred HhcCchhHHHHHHHHHHhcCC-----------CCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994 353 CNNGLVQNAEAILEDLVEKGK-----------ATT---PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK 418 (496)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 418 (496)
...|++++|..+++.+.+..+ .|+ ...+..+...+...|+.++|++.++++.. ..+.+..
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~------~~P~n~~ 394 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY------NAPGNQG 394 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHH
Confidence 999999999999999987632 123 23456778889999999999999999987 4445667
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994 419 VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVC 492 (496)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~ 492 (496)
.+..+...+...|++++|++.+++.....|.+...+..++..+.+.| ++|..+++++.+ ..|+......|-+
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 88889999999999999999999999888888888888888888888 899999999988 5687776555433
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.1e-17 Score=168.37 Aligned_cols=404 Identities=8% Similarity=-0.034 Sum_probs=297.7
Q ss_pred cHHhhhccCCCCCCCcHHHHHHHHHc--CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHH
Q 010994 31 TLYSIISPLGNPGTRIEPELDNWVKN--GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLI 108 (496)
Q Consensus 31 ~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (496)
..+....-.|+.. .++..|.+. ..+.+...+..+...+.+.|++++|.++++...+.. |.++.....+...+
T Consensus 20 d~~~ia~~~g~~~----~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l 93 (765)
T PRK10049 20 DWLQIALWAGQDA----EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3444444444433 233444433 245555678999999999999999999999999875 34566666777888
Q ss_pred HhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH
Q 010994 109 GRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 187 (496)
...|++++|...++++....| +.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..++|+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 899999999999999998887 466 888999999999999999999999987433 66677778888888899999999
Q ss_pred HHHHHHHCCCCCCh------hhHHHHHHHHh-----hcCCh---HHHHHHHHHhhcCCCCCCCHH-HHH----HHHHHHH
Q 010994 188 VLTEMKAKNIFPDN------FSYRICINSYG-----ARSDL---EGMEIILREMESQPHIVLDWS-TYA----SAAHFYI 248 (496)
Q Consensus 188 ~~~~m~~~~~~p~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~~-~~~----~li~~~~ 248 (496)
.++.... .|+. .....++.... ..+++ ++|++.++.+.......|+.. .+. ..+..+.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 8876654 2321 01122222222 22234 778888888872212223221 111 1134456
Q ss_pred hcCChHHHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHH
Q 010994 249 KANLIDKASDVLKKAEERLEQ-KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY---INRDYITMLEALMKLGEHE 324 (496)
Q Consensus 249 ~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 324 (496)
..|+.++|+..|+.+.+.+.. |+ .....+...|...|++++|+..|+.+....+.. .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999886532 22 222335778999999999999999877654321 1234566777889999999
Q ss_pred HHHHHHHHHHhcCC-----------CCCc---ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994 325 EAEKVLKEWELSGN-----------SYDT---RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA 390 (496)
Q Consensus 325 ~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 390 (496)
+|..+++.+.+... .|+. ..+..+...+...|+.++|+.+++++....+. +...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 99999999987631 1221 23456777888999999999999999987655 788999999999999
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994 391 GKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY 454 (496)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 454 (496)
|++++|++.+++++. ..|+ ...+......+...|++++|..+++.+....|.++.+.
T Consensus 407 g~~~~A~~~l~~al~-------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 407 GWPRAAENELKKAEV-------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999987 5565 56666777788999999999999999998777776553
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=5.8e-17 Score=160.26 Aligned_cols=378 Identities=10% Similarity=-0.055 Sum_probs=273.8
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHH
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYG 135 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 135 (496)
...|+...|..+..+|.+.|++++|++.++..++.. |..+..+......+...|++++|+..|..+...++ +.....
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~ 232 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA 232 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 455678889999999999999999999999999875 24455677778889999999999998876655433 211111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---------------------------CCCCC-hhHHHHHHHHH---HhcCCCCc
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEM---------------------------GIALS-TLTYNDIMCLY---SKTGQYEK 184 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~p~-~~~~~~l~~~~---~~~~~~~~ 184 (496)
.++..+.......++...++.-... ...|+ ...+..+...+ ...+++++
T Consensus 233 ~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~ 312 (615)
T TIGR00990 233 QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEE 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHH
Confidence 1221111111111111111100000 00000 00011111111 12357889
Q ss_pred HHHHHHHHHHCC-CCC-ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 185 VPDVLTEMKAKN-IFP-DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK 262 (496)
Q Consensus 185 a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 262 (496)
|.+.|+.....+ ..| +...+..+...+...|++++|+..+++.. ...+ .....|..+...+...|++++|...|++
T Consensus 313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal-~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI-ELDP-RVTQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998765 234 34567888888999999999999999988 5443 4466788899999999999999999999
Q ss_pred HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994 263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT 342 (496)
Q Consensus 263 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (496)
..+..+ .+..+|..+...+...|++++|+..|+......+ .+...+..+..++.+.|++++|...++...+.. +.+.
T Consensus 391 al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~ 467 (615)
T TIGR00990 391 ALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAP 467 (615)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCh
Confidence 987643 5678899999999999999999999998888765 556778888999999999999999999998763 3356
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHh------HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPN------SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD 416 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~ 416 (496)
..++.+...+...|++++|...|++..+.....+.. .++.....+...|++++|.+++++++. +.|+
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-------l~p~ 540 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-------IDPE 540 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cCCC
Confidence 788899999999999999999999998764331111 122223334457999999999999987 3454
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 417 P-KVITSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 417 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
. ..+..+...+.+.|++++|...|++..+..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 4 5788899999999999999999998876533
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.1e-16 Score=154.92 Aligned_cols=408 Identities=8% Similarity=0.010 Sum_probs=251.9
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcC
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQR 145 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g 145 (496)
.++..+...|+.++|+..++...... +............+...|+++.|+.+|+++.+.+| |+..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 55566666666666666666665221 11112222223455566666666666666666655 3555556666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 010994 146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILR 225 (496)
Q Consensus 146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 225 (496)
+.++|++.++.+... .|+...+..++..+...++..+|++.++++.+.. +-+...+..++.+..+.|-.+.|.++..
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 666666666666554 3343444333333333344444666666666642 2234445556666666666666665554
Q ss_pred HhhcCCCCCCCHHH-----HHHHHHHH---H--hcCC---hHHHHHHHHHHHHhcc-cCcc-c----hHHHHHHHHHhcC
Q 010994 226 EMESQPHIVLDWST-----YASAAHFY---I--KANL---IDKASDVLKKAEERLE-QKDG-I----GYNFLISLYASLG 286 (496)
Q Consensus 226 ~~~~~~~~~~~~~~-----~~~li~~~---~--~~~~---~~~a~~~~~~m~~~~~-~~~~-~----~~~~l~~~~~~~~ 286 (496)
+-. +.-...+..- ...+++.- . ...+ .+.|+.-++.+...-. .|.. . ...-.+-++...|
T Consensus 228 ~~p-~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 228 ENP-NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred hCc-cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 432 1110000000 00011000 0 0111 2334444444443211 1221 1 1223456778889
Q ss_pred CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCcccHHHHHHHHHhcCchhHH
Q 010994 287 NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN-----SYDTRIPNAVIIGYCNNGLVQNA 361 (496)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a 361 (496)
++.++++.|+.+...+......+-..+..+|...+++++|..++..+..... .++......|.-+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 9999999999888777655667888899999999999999999999876431 22333346788889999999999
Q ss_pred HHHHHHHHhcCC-----------CCCH--h-HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994 362 EAILEDLVEKGK-----------ATTP--N-SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427 (496)
Q Consensus 362 ~~~~~~~~~~~~-----------~p~~--~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 427 (496)
..+++++.+..+ .||. . .+..++..+...|+..+|++.++++.. .-+-|......+...+
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~------~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS------TAPANQNLRIALASIY 460 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHH
Confidence 999999987322 1222 2 344567778889999999999999986 4455778888888999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHH
Q 010994 428 GDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKE 488 (496)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~ 488 (496)
...|.+.+|++.++......|.+..+....+.++...| ++|..+.+.+.+ ..|+.....
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~ 521 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQ 521 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHH
Confidence 99999999999998777777888888888888888888 788877777766 346555433
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=7.9e-16 Score=132.99 Aligned_cols=407 Identities=12% Similarity=0.087 Sum_probs=285.8
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc--CH-------------------------HH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH--GF-------------------------LS 116 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------------------~~ 116 (496)
+=+.|+. +...|..+++.-+|+.|.+.| .+.++.....++++.+-.+ +. +.
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 4444444 456677888888888888877 5566665555544333211 11 11
Q ss_pred HHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC
Q 010994 117 AESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN 196 (496)
Q Consensus 117 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (496)
|.-+|+..+ .+..+|.++|.++++-.+.+.|.+++++-.....+.+..+||.+|.+-.-.. ..++..+|....
T Consensus 196 AdL~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqk 268 (625)
T KOG4422|consen 196 ADLLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQK 268 (625)
T ss_pred HHHHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhh
Confidence 221222211 3678999999999999999999999999988888889999999998765433 288999999999
Q ss_pred CCCChhhHHHHHHHHhhcCChHH----HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHh----c
Q 010994 197 IFPDNFSYRICINSYGARSDLEG----MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK-ASDVLKKAEER----L 267 (496)
Q Consensus 197 ~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~----~ 267 (496)
+.||..|+|+++.+..+.|+++. |.+++.+|+ +.|+.|...+|..+|..+.+.++..+ |..++.++... .
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 99999999999999999998875 566788898 99999999999999999999888754 55555555432 1
Q ss_pred ccC----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994 268 EQK----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK----RYIN---RDYITMLEALMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 268 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (496)
.+| |...|...+..|.+..+.+.|.++-........ .++. .-|..+..+.++....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 222 334567778888899999999998885444322 1221 23567778888899999999999999988
Q ss_pred CCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-Ch--------HH-----HHHHHHH
Q 010994 337 GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KT--------ER-----GFQCMKA 402 (496)
Q Consensus 337 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~~~ 402 (496)
-.-|+..+...++++....|+++-.-+++..++..|...+...-..++..+++.. +. .. |..+++.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999998886656665555666665544 11 00 1111111
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-c-CCCCHHHHH---HHHHHHHhCC--CcHHHHHHHH
Q 010994 403 ALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-V-IPMNRQMYH---AFIKANIRNG--KGVDELLDSM 475 (496)
Q Consensus 403 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-~~~~~~~~~---~l~~~~~~~g--~~a~~~~~~m 475 (496)
....-.+...........+.+.-.+.+.|..++|.++|..+.+ + --|-....| -+++.-.+.. ..|..+++-|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1100011123445556677777788999999999999998844 3 112222334 4444444444 5777888777
Q ss_pred HhCCC
Q 010994 476 KADGI 480 (496)
Q Consensus 476 ~~~g~ 480 (496)
...++
T Consensus 588 ~~~n~ 592 (625)
T KOG4422|consen 588 SAFNL 592 (625)
T ss_pred HHcCc
Confidence 65543
No 23
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1e-16 Score=139.44 Aligned_cols=397 Identities=14% Similarity=0.084 Sum_probs=245.0
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC------HHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT------YQTYGAL 137 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l 137 (496)
.+..|...|.....+.+|+..|+-+.+...++.....-..+...+.+.+.+..|+++++....+-|+ ..+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3445555666666677777777777766544333333333445555666666666666655554332 2234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCh------------hhHH
Q 010994 138 LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN------------FSYR 205 (496)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------------~~~~ 205 (496)
.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++.--|+.++..+.|.+|+.-...||. ...+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 44556666666666666665544 345444333444444456666666666665543211111 1110
Q ss_pred H---------------------------------------------------------------HHHHHhhcCChHHHHH
Q 010994 206 I---------------------------------------------------------------CINSYGARSDLEGMEI 222 (496)
Q Consensus 206 ~---------------------------------------------------------------li~~~~~~~~~~~a~~ 222 (496)
. -.--+.++|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 0 0112445677777777
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHH------------------------------------HHhcCChHHHHHHHHHHHHh
Q 010994 223 ILREMESQPHIVLDWSTYASAAHF------------------------------------YIKANLIDKASDVLKKAEER 266 (496)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~------------------------------------~~~~~~~~~a~~~~~~m~~~ 266 (496)
+++-+. ..+-+.-...-+.|-.. ....|++++|.+.|++....
T Consensus 441 ilkv~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 766665 22211111111111100 01235666777766665443
Q ss_pred cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 010994 267 LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN 346 (496)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (496)
...-. .....+.-.+-..|+.++|++.|-.+...-. .+......+...|-...+..+|.+++.+.... ++.|+.+..
T Consensus 520 dasc~-ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 22111 1222233345566777777777765444322 55566666777777777888888887776544 456788888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSK 426 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 426 (496)
.|...|-+.|+-..|.+.+-+--.. .+.|..+..-|...|....-+++++.+|+++.- +.|+..-|..++..
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-------iqp~~~kwqlmias 668 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-------IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-------cCccHHHHHHHHHH
Confidence 9999999999999998876554443 344777888888889999999999999999864 89999999988766
Q ss_pred H-hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHH
Q 010994 427 L-GDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDS 474 (496)
Q Consensus 427 ~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~ 474 (496)
| .+.|+++.|..+++.+...+|.|..+...|++.+...| .++.++-++
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~k 718 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADK 718 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHH
Confidence 5 56799999999999999999999999999999999999 555554433
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=3.6e-15 Score=147.48 Aligned_cols=407 Identities=11% Similarity=0.008 Sum_probs=293.9
Q ss_pred cHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHH--HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHH
Q 010994 31 TLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRI--IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLI 108 (496)
Q Consensus 31 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (496)
.++..+...|.... +...++.. ..+-+...+..+ ...+...|++++|+++|+.+.+..+ -++..+..+...+
T Consensus 73 dll~l~~~~G~~~~-A~~~~eka---~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y 146 (822)
T PRK14574 73 DWLQIAGWAGRDQE-VIDVYERY---QSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQ 146 (822)
T ss_pred HHHHHHHHcCCcHH-HHHHHHHh---ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHH
Confidence 55555555555332 22233333 222233334444 5688888999999999999999863 5577777778888
Q ss_pred HhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHH
Q 010994 109 GRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDV 188 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 188 (496)
...++.++|+..++++....|+...+..++..+...++..+|+..++++.+.+ +-+...+..+..+..+.|-...|.++
T Consensus 147 ~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 147 ADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred hhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999999987777556555555677777999999999884 33778888999999999999888877
Q ss_pred HHHHHHCCCCCChhhH------HHHHHHH---h--hcCC---hHHHHHHHHHhhcCCCCCCC-HHHH----HHHHHHHHh
Q 010994 189 LTEMKAKNIFPDNFSY------RICINSY---G--ARSD---LEGMEIILREMESQPHIVLD-WSTY----ASAAHFYIK 249 (496)
Q Consensus 189 ~~~m~~~~~~p~~~~~------~~li~~~---~--~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~----~~li~~~~~ 249 (496)
..+-... +.+...-+ ...++.- . ...+ .+.|+.-++.+....+..|. ...| --.+.++..
T Consensus 226 ~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 226 AKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 6653321 22211111 1112111 0 1112 34455666665522222132 2222 234567888
Q ss_pred cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcCCHH
Q 010994 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-----RYINRDYITMLEALMKLGEHE 324 (496)
Q Consensus 250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~ 324 (496)
.++..++++.|+.+...+.+....+-..+..+|...+++++|..+|+......+ .++......|..++...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 999999999999999887665667888999999999999999999998866542 123333578899999999999
Q ss_pred HHHHHHHHHHhcCC-----------CCCc---ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994 325 EAEKVLKEWELSGN-----------SYDT---RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA 390 (496)
Q Consensus 325 ~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 390 (496)
+|..+++.+.+..+ .|+. ..+..++..+.-.|+..+|++.++.+....+. |......+...+...
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~R 463 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 99999999987422 1221 12345677788899999999999999887665 899999999999999
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994 391 GKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM 453 (496)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 453 (496)
|.+.+|.+.++.+.. +.|+ ..+......++...|++.+|..+.+.+....|.+..+
T Consensus 464 g~p~~A~~~~k~a~~-------l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 464 DLPRKAEQELKAVES-------LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CCHHHHHHHHHHHhh-------hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999977764 5665 4577788888999999999999999988877766643
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3.6e-14 Score=143.44 Aligned_cols=401 Identities=12% Similarity=0.072 Sum_probs=240.6
Q ss_pred CChhhHHHH-HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHh-hcCHHHHHHHHHhchhcCCCHHHHHHH
Q 010994 60 VRVGELQRI-IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGR-VHGFLSAESYFSNLKDDEKTYQTYGAL 137 (496)
Q Consensus 60 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~l 137 (496)
|+....... ...|.+.|++++|++++..+.+.++ .+......+...+.+ .++ +.+..+++. ....|+..+..+
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p--l~~~~~~~L~~ay~q~l~~-~~a~al~~~--~lk~d~~l~~al 253 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT--LSAAERRQWFDVLLAGQLD-DRLLALQSQ--GIFTDPQSRITY 253 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhCH-HHHHHHhch--hcccCHHHHHHH
Confidence 334444444 8888899999999999999999873 445545555556666 466 777777553 223578888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-CChhHHHHH------------------------------HHHHHhcCCCC---
Q 010994 138 LNCYVRQRQTDKALSHFRKMKEMGIA-LSTLTYNDI------------------------------MCLYSKTGQYE--- 183 (496)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l------------------------------~~~~~~~~~~~--- 183 (496)
...|.+.|+.++|.++++++...-.. |+..+|..+ +..+.+.++++
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999998887544222 222222111 22222333322
Q ss_pred ------------------------------------------------------------cHHHHHHHHHHC-C-CCCCh
Q 010994 184 ------------------------------------------------------------KVPDVLTEMKAK-N-IFPDN 201 (496)
Q Consensus 184 ------------------------------------------------------------~a~~~~~~m~~~-~-~~p~~ 201 (496)
+|..+|+..... + ..++.
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 222222222220 0 01111
Q ss_pred hhHHHHHHHHhhcCC---hHHHHHH-------------------------HHHhhcCCCCCC--CHHHHHHHHHHHHhcC
Q 010994 202 FSYRICINSYGARSD---LEGMEII-------------------------LREMESQPHIVL--DWSTYASAAHFYIKAN 251 (496)
Q Consensus 202 ~~~~~li~~~~~~~~---~~~a~~~-------------------------~~~~~~~~~~~~--~~~~~~~li~~~~~~~ 251 (496)
...+-++..|.+.+. ...+..+ +.... . ..++ +...|..+..++.. +
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~-~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL-G-DMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc-c-cCCCCCCHHHHHHHHHHHHh-C
Confidence 112234444444433 1111111 11111 0 0112 44455555555554 5
Q ss_pred ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010994 252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLK 331 (496)
Q Consensus 252 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (496)
+.++|...+.+..... |+......+...+...|++++|...|+.+.... ++...+..+..++.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666777666655433 343333333444457778888888877654432 333445566667777888888888887
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994 332 EWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK 411 (496)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (496)
...+... .+...+..+.......|++++|...+++..+.. |+...|..+...+.+.|++++|+..+++++.
T Consensus 567 qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~------ 637 (987)
T PRK09782 567 QAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE------ 637 (987)
T ss_pred HHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 7776531 122222223333344588888888888887754 4567777888888888888888888888876
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCCh
Q 010994 412 GWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDE 484 (496)
Q Consensus 412 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~ 484 (496)
..| +...+..+..++...|++++|...++...+..|.++..+..+..++...| ++|+..+++..+ +.|+.
T Consensus 638 -l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 638 -LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 444 34566677777888888888888888777777777888888888888888 678888888776 34554
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.8e-15 Score=141.50 Aligned_cols=402 Identities=10% Similarity=-0.017 Sum_probs=241.0
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYV 142 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~ 142 (496)
.|-.+.+++...|++++|...|-...+.... ...-.+.-+...+.+.|+++.+...|+.+....|| ..+...|...|+
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADND-NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCCC-CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 4555666666666677776666666654410 00111222355666667777777777766666664 445455555555
Q ss_pred hcC----CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHH----HCCCCCChhhHHHHHHHHhhc
Q 010994 143 RQR----QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK----AKNIFPDNFSYRICINSYGAR 214 (496)
Q Consensus 143 ~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~li~~~~~~ 214 (496)
..+ ..+.|..++....+.- +.|...|-.+...+....-+ .++..|.... ..+-.+.+...|.+...+...
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 443 3455555555554442 33566666666655543333 3355554433 334445666777777777777
Q ss_pred CChHHHHHHHHHhhcCC--CCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC
Q 010994 215 SDLEGMEIILREMESQP--HIV------LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG 286 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~--~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 286 (496)
|+++.|...|....... ... ++..+-..+..++-..++.+.|.+.|..+....+ .=+..|-.++......+
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKN 544 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhcc
Confidence 88777777776665220 111 2222222355555566677777777777665432 11233333333333445
Q ss_pred CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHh-----------
Q 010994 287 NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN-SYDTRIPNAVIIGYCN----------- 354 (496)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------- 354 (496)
...+|...++....... .++..++.+...+.+..++..|.+-|..+.+.-. .+|..+.-+|...|.+
T Consensus 545 ~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred CcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 66777777776655443 5555666666677777777777776655554322 2355444445554432
Q ss_pred -cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCH
Q 010994 355 -NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV 433 (496)
Q Consensus 355 -~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 433 (496)
.+..++|+++|.+.+...+. |...-|.+...++..|++.+|..+|.+..+ ...-...+|..+.++|..+|++
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrE------a~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVRE------ATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHH------HHhhCCceeeeHHHHHHHHHHH
Confidence 24567788888888877665 777777888888888888888888888876 3333455677778888888888
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 434 QDVEAFVAALRTV--IPMNRQMYHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 434 ~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
..|.++|+...+. ...++.+.+.|.+++.+.| ++|.+.+.....
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8888888855553 3456677888888888888 677776666555
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.7e-14 Score=122.87 Aligned_cols=341 Identities=13% Similarity=0.152 Sum_probs=181.7
Q ss_pred CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 010994 96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM 173 (496)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 173 (496)
.++.++..++..+|+.-..+.|..++++..... .+..+||.+|.+-.-.. -.+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 445666666666666666666666666554432 35556666665432221 155666666666666666666666
Q ss_pred HHHHhcCCCCc----HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHH-HHHHHHHhhc---CCCCC----CCHHHHH
Q 010994 174 CLYSKTGQYEK----VPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEG-MEIILREMES---QPHIV----LDWSTYA 241 (496)
Q Consensus 174 ~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~---~~~~~----~~~~~~~ 241 (496)
.+.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ |..++.++.. ...++ .|..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 66666665543 34455566666666666666666666666555432 2222222220 11111 2233344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhc----ccCc---cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994 242 SAAHFYIKANLIDKASDVLKKAEERL----EQKD---GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314 (496)
Q Consensus 242 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 314 (496)
..+..|.+..+.+-|..+..-+.... +.|+ ..-|..+....|+....+.....|+.|.-....|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 45555556666666665554443210 1111 1224455555566666666666666666555556666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC--------------------c-hhHHHHHHHHHHhcCC
Q 010994 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG--------------------L-VQNAEAILEDLVEKGK 373 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------------~-~~~a~~~~~~~~~~~~ 373 (496)
++....|.++-.-+++..+...|...+...-.-++..+++.. + .+....--.++.+...
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 666666666666566555555442222222222222222211 1 1111222334444433
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG---WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
.....+.+...+.+.|..++|.+++.-... +.. ..|.......++....+.++..+|..+++-+...
T Consensus 521 --~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~----~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 521 --PATSLNCIAILLLRAGRTQKAWEMLGLFLR----KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred --ChhHHHHHHHHHHHcchHHHHHHHHHHHHh----cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 445667777778888888888888877754 122 2233344445666667777788888887766664
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.3e-13 Score=119.23 Aligned_cols=372 Identities=13% Similarity=0.049 Sum_probs=263.4
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHH-H
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY-G 135 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~ 135 (496)
+...|...+-..--.+.+.|..+.|+..|....... |..+...+.+..-..+.+.+..+...++.. +...- -
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P~~W~AWleL~~lit~~e~~~~l~~~l~~~--~h~M~~~ 231 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----PWFWSAWLELSELITDIEILSILVVGLPSD--MHWMKKF 231 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----CcchHHHHHHHHhhchHHHHHHHHhcCccc--chHHHHH
Confidence 344444444444444556777888888888777654 555555554444444444444443332221 11111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC--CChhhHHHHHHHHhh
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF--PDNFSYRICINSYGA 213 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~ 213 (496)
-+..++-...+.++++.=.+.....|++-+...-+....+.-...|+++|+.+|++..+...- -|..+|..++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 244566666788888888888888888766655555566666778999999999999987311 256677777643332
Q ss_pred cCChH-HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 010994 214 RSDLE-GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL 292 (496)
Q Consensus 214 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 292 (496)
...+. -|..+++-= + --+.|+..+.+.|+-.++.++|...|++..+.++ ....+|+.+.+-|....+...|+
T Consensus 312 ~skLs~LA~~v~~id--K----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNID--K----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhc--c----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHH
Confidence 22222 122222111 1 3346677788899999999999999999888664 56688999999999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994 293 RLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (496)
+-++.....++ .|-..|-.+.++|.-.+...-|+-+|++..+.. +-|...|.+|.++|.+.++.++|++.|.+....|
T Consensus 385 ~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999988877 788999999999999999999999999998864 4478899999999999999999999999999876
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 373 KATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 373 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
-. +...+..+...|.+.++.++|.+.|.+.++.......+.|.. ....-|..-+.+.+++++|.........
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 44 668899999999999999999999999887442222233322 2333455567778888887766554443
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.6e-14 Score=135.89 Aligned_cols=404 Identities=13% Similarity=0.097 Sum_probs=301.9
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc----CHHHHHHHHHhchhcCC-CHHHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH----GFLSAESYFSNLKDDEK-TYQTYGALL 138 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~~~~~~-~~~~~~~li 138 (496)
.+--|...+.+.|+++.+...|+.+.+.. |.+..+...+..+|...+ ..+.|..++.+.....| |...|-.+.
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 44567889999999999999999999976 245555555666666664 56888888888887766 788888888
Q ss_pred HHHHhcCCHHHHHHHHHH----HHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC---CCCCCh------hhHH
Q 010994 139 NCYVRQRQTDKALSHFRK----MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK---NIFPDN------FSYR 205 (496)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~ 205 (496)
..+-...-+ .++..|.. +...+-.+.+...|.+...+...|++.+|...|...... ...+|. .+--
T Consensus 422 ql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 877665444 44777665 345666688899999999999999999999999998765 222333 1233
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHh
Q 010994 206 ICINSYGARSDLEGMEIILREMESQPHIVLD-WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYAS 284 (496)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 284 (496)
.+..+.-..++.+.|.+.|..+. ... |+ +..|--++...-..+...+|...+...... ...++..++.+...+..
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Il-keh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSIL-KEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHH-HHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHh
Confidence 45566677889999999999998 333 33 334444443444457888999999988773 34777888888889999
Q ss_pred cCCHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994 285 LGNKSEVLRLWDLEKTACK-RYINRDYITMLEALMK------------LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351 (496)
Q Consensus 285 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (496)
...+..|.+-|........ .+|..+...|.+.|.. .+..++|.++|.++.+..+ -|...-|.+.-.
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiV 655 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIV 655 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhh
Confidence 9999999887775444332 3455665566665533 2457889999999988753 377888889999
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccC
Q 010994 352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG 431 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 431 (496)
++..|++..|..+|.+..+.... +..+|-.+.++|..+|++-.|++.|+..... ..-.-+..+...|.+++.+.|
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk----f~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKK----FYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHhh
Confidence 99999999999999999987543 5678999999999999999999999999882 344557789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHhCC---------------------CcHHHHHHHHHhCCCC
Q 010994 432 SVQDVEAFVAALRTVIPMNRQM-YHAFIKANIRNG---------------------KGVDELLDSMKADGID 481 (496)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---------------------~~a~~~~~~m~~~g~~ 481 (496)
++.+|.+.+.......|.++.. +|..+ +..+.+ +.|.++|..|...+-.
T Consensus 731 ~~~eak~~ll~a~~~~p~~~~v~FN~a~-v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAPSNTSVKFNLAL-VLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred hHHHHHHHHHHHHHhCCccchHHhHHHH-HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999988777766666544 44332 222211 4677888888765443
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=2e-13 Score=138.18 Aligned_cols=386 Identities=13% Similarity=-0.000 Sum_probs=251.2
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcC
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQR 145 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g 145 (496)
.++..+.+++++..+.++.. ...+ ++ ............+...++......+-...| +.....-+.-...+.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~--~~~~----~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLA--TLPA----NE-MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHhccHHHHHHHHhc--CCCc----ch-HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 34667777787776665522 1111 11 111112222234566666666666666544 5665555666667778
Q ss_pred CHHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCCCC---cHHHH----------------------HHHHHHC-CC
Q 010994 146 QTDKALSHFRKMKEM--GIALSTLTYNDIMCLYSKTGQYE---KVPDV----------------------LTEMKAK-NI 197 (496)
Q Consensus 146 ~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~---~a~~~----------------------~~~m~~~-~~ 197 (496)
+.++|.++|+..... +-.++....+-++..|.+.+... ++..+ ++..... +.
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 888888888776552 12234444556666666665522 22111 1122111 11
Q ss_pred -CC--ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccch
Q 010994 198 -FP--DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG 274 (496)
Q Consensus 198 -~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 274 (496)
++ +...|..+..++.. ++.++|...+.+.. ... |+......+...+...|++++|...|+++... +|+...
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al-~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE-QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNED 544 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH-HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence 23 45667777777766 78888888776665 333 44433334455556889999999999887553 244455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 010994 275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN 354 (496)
Q Consensus 275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (496)
+..+..++.+.|+.++|...++......+ .....+..+.......|++++|...+++..+. .|+...+..+...+.+
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 66777788888999999999887776543 22233333344444568999999999888876 4567778888888889
Q ss_pred cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCH
Q 010994 355 NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSV 433 (496)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 433 (496)
.|+.++|...+++..+..+. +...++.+...+...|+.++|+..++++++ ..| +...+..+..++...|++
T Consensus 622 lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~-------l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK-------GLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999998887655 677888888888899999999999999887 444 556788888888899999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994 434 QDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK 476 (496)
Q Consensus 434 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 476 (496)
++|...+++.....|.+..+.-.......+.. +.|.+-+++-.
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888766666666655555555544 55555555543
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=3.6e-13 Score=127.46 Aligned_cols=373 Identities=14% Similarity=0.133 Sum_probs=280.2
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcC
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQR 145 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g 145 (496)
.....+...|++++|.+++.+++++. |..+..+..+..++-+.|+.+.+...+-.+....| |...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 33444455599999999999999986 47788899999999999999999998888877777 7899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhH----HHHHHHHhhcCChHHHH
Q 010994 146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSY----RICINSYGARSDLEGME 221 (496)
Q Consensus 146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~li~~~~~~~~~~~a~ 221 (496)
.+++|.-.|.+..+... ++...+---+..|-+.|+...|.+.|.++.....+.|..-+ ..++..+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999998843 46666666788899999999999999999987432232222 33456677788889999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc----------------------cchHH---
Q 010994 222 IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD----------------------GIGYN--- 276 (496)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------------~~~~~--- 276 (496)
+.++......+-..+...++.++..|.+..+++.|......+......+| ...|.
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 99888774334446677788899999999999999998888765211111 11111
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994 277 -FLISLYASLGNKSEVLRLWDLEKTAC--KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC 353 (496)
Q Consensus 277 -~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (496)
.++-++......+....+........ +..+...|.-+..++...|++..|..+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 12223333333333333333333333 344557789999999999999999999999998765556778999999999
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhh---hcCCCCCCCHHHHHHHHHHHhcc
Q 010994 354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY---VEGKGWKPDPKVITSILSKLGDE 430 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~p~~~~~~~l~~~~~~~ 430 (496)
..|.++.|...|+..+...+. +...-..|...+.+.|+.++|.+.+..+...- .+..+..|+..........+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 999999999999999987544 55566778888999999999999998854300 11234566666666777788888
Q ss_pred CCHHHHHHHHHHH
Q 010994 431 GSVQDVEAFVAAL 443 (496)
Q Consensus 431 g~~~~a~~~~~~~ 443 (496)
|+.++-..+-..|
T Consensus 540 gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 540 GKREEFINTASTL 552 (895)
T ss_pred hhHHHHHHHHHHH
Confidence 9988755544433
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=8.9e-14 Score=129.34 Aligned_cols=283 Identities=13% Similarity=0.115 Sum_probs=207.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhH-HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH--HHHHHHhhcCChHHH
Q 010994 144 QRQTDKALSHFRKMKEMGIALSTLT-YNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR--ICINSYGARSDLEGM 220 (496)
Q Consensus 144 ~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a 220 (496)
.|++++|.+.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588998888777655542 12333 333345557888999999999888764 44543332 335677888999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc-------chHHHHHHHHHhcCCHHHHHH
Q 010994 221 EIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG-------IGYNFLISLYASLGNKSEVLR 293 (496)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 293 (496)
...++++. +.++ -+......+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~-~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLL-EVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHH-hcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99998887 5553 56777788888999999999999999988876553222 133333444444455566666
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994 294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 373 (496)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (496)
+++..-... +.+......+..++...|+.++|..++++..+. .++.. -.++.+....++.+++.+..+...+..+
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 666543332 256677888899999999999999999888875 34442 2234444566899999999999888765
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
. |...+..+...|.+.+++++|.+.|+.+.+ ..|+..++..+...+.+.|+.++|.+++++-..
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~-------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALK-------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 777888999999999999999999999986 679999988999999999999999999886543
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=2.1e-16 Score=140.55 Aligned_cols=262 Identities=18% Similarity=0.165 Sum_probs=99.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMG-IALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGAR 214 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 214 (496)
.+...+.+.|++++|+++++...... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45667777788888888875544332 2334555555666666777888888888887765433 44556666665 677
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHHHHHH
Q 010994 215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL-EQKDGIGYNFLISLYASLGNKSEVLR 293 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 293 (496)
+++++|.+++...- +.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+.
T Consensus 91 ~~~~~A~~~~~~~~-~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAY-ERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccc-ccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78888877776654 222 344555667777778888888888888765432 23456667777778888888888888
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994 294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 373 (496)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (496)
.++......+ .+......++..+...|+.+++..++....+.. +.|...+..+..+|...|+.++|+.+|++..+.++
T Consensus 168 ~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 8887777665 456667777778888888888888877777653 45666777888888888888888888888877654
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
. |+.....+..++...|+.++|.++.+++..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 777778888888888888888888877654
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.3e-12 Score=115.90 Aligned_cols=284 Identities=10% Similarity=0.003 Sum_probs=223.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL 281 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 281 (496)
........-|...+++.+..++.+.+. +..+ +....+-.-|.++...|+..+-..+=.++.+.-| ....+|-++..-
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~ll-e~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELL-EKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHH-hhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHH
Confidence 334444555667888999999999887 5444 6666676777899999998888888888888654 667899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA 361 (496)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (496)
|...|+.++|.++|.+.....+ .-...|..+...++-.|+-++|...+..+.+.-..-... +--+.--|.+.++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-SLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHhccHHHH
Confidence 9999999999999987665544 344678889999999999999999988877642111111 12234457889999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC-CCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994 362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK-PDPKVITSILSKLGDEGSVQDVEAFV 440 (496)
Q Consensus 362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (496)
.+.|.+.....+. |+...+.+.......+.+.+|..+|+..+...-....-. -...+++.|..+|.+.+++++|...+
T Consensus 400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999999887544 888899999988999999999999999985211111111 24567889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhh
Q 010994 441 AALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCT 493 (496)
Q Consensus 441 ~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~ 493 (496)
+......|.+..+|.+++-.|...| +.|++.|.+... +.||..+.+.++..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 9998889999999999999999999 999999998665 88999777766653
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=2.8e-13 Score=126.79 Aligned_cols=290 Identities=12% Similarity=0.010 Sum_probs=182.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHH
Q 010994 143 RQRQTDKALSHFRKMKEMGIALST-LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME 221 (496)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 221 (496)
..|+++.|.+.+....+. .|+. ..+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888776654 3333 3334445667777888888888887765422222223333466677788888888
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHH-HHHHHH---HhcCCHHHHHHHHHH
Q 010994 222 IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYN-FLISLY---ASLGNKSEVLRLWDL 297 (496)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 297 (496)
..++.+. +..+ -+..+...+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..
T Consensus 174 ~~l~~l~-~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 174 HGVDKLL-EMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHH-HhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888877 4443 45566777778888888888888888887776542 222221 111111 222222323334443
Q ss_pred HHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHhcCchhHHHHHHHHHHhc
Q 010994 298 EKTACKR---YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRI---PNAVIIGYCNNGLVQNAEAILEDLVEK 371 (496)
Q Consensus 298 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (496)
+....+. .+...+..+...+...|+.++|..++++..+.. ||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 3333321 356677777888888888888888888888763 33321 111222223346677777888777765
Q ss_pred CCCCCH--hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 372 GKATTP--NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 372 ~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
.+. |+ ....++...+.+.|++++|.+.|+.+.. ....|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-----~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAA-----CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-----hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433 44 5566788888888888888888885333 34678888788888888888888888888876533
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=2.1e-13 Score=126.80 Aligned_cols=283 Identities=11% Similarity=0.037 Sum_probs=184.5
Q ss_pred hcCHHHHHHHHHhchhcCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHH--HHHHHHHhcCCCCcHHH
Q 010994 111 VHGFLSAESYFSNLKDDEKTYQTYGAL-LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYN--DIMCLYSKTGQYEKVPD 187 (496)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~ 187 (496)
.|+++.|++.+.......+++..+..+ .....+.|+++.|...++++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777777776655543333333333 34446777777777777777664 33433222 33556777777777777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 010994 188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDW-------STYASAAHFYIKANLIDKASDVL 260 (496)
Q Consensus 188 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~ 260 (496)
.++++.+.. +-+......+...|.+.|++++|.+++..+. +.+..++. .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMA-KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777654 2245666677777777777777777777776 33332211 13334444444455556666666
Q ss_pred HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010994 261 KKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY 340 (496)
Q Consensus 261 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (496)
+.+...- +.++.....+...+...|+.++|.++++...... ++.. ..++.+....++.+++.+..+...+.. +-
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 6653322 3566677777888888888888888887666532 3331 122334445588888888888887763 23
Q ss_pred CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
|......+...+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5556777888888888888888888888875 47777888888888888888888888888765
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1.5e-12 Score=123.31 Aligned_cols=347 Identities=15% Similarity=0.127 Sum_probs=269.3
Q ss_pred HhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH
Q 010994 109 GRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 187 (496)
...|++++|..++.++....| +...|.+|...|-..|+.+++...+-..-..+.. |...|..+.....+.|+++.|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHH
Confidence 344999999999999999887 6889999999999999999999988776665433 78999999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHH
Q 010994 188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASA----AHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 188 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m 263 (496)
.|.+.++.. +++...+-.-...|-+.|+...|..-|.++. ...++.|+.-+..+ +..+...++.+.|.+.++..
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLL-QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHH-hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999874 3455555566778899999999999999998 66554555544444 45666778889999998877
Q ss_pred HHh-cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----------------------CCCchhHH----HHHHH
Q 010994 264 EER-LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK----------------------RYINRDYI----TMLEA 316 (496)
Q Consensus 264 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~~----~l~~~ 316 (496)
... +-..+...++.++..+.+...++.+......+..... .++...|. -++-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 552 2335667889999999999999999988876665111 12222221 23334
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994 317 LMKLGEHEEAEKVLKEWELSG--NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 394 (496)
+.+.+..+....+.....+.. +.-++..|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 455566666666666666665 344567888999999999999999999999998766667889999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHh---------cCCCCHHHHHHHHHHHHhC
Q 010994 395 RGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRT---------VIPMNRQMYHAFIKANIRN 464 (496)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~ 464 (496)
.|.+.|++++. ..|+ ...-.+|...+.+.|+.++|.+++..+.. ..+|+..........|.+.
T Consensus 467 ~A~e~y~kvl~-------~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 467 EAIEFYEKVLI-------LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHHHHHHHHHh-------cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 99999999997 5554 45777788889999999999999987542 1345555555666677777
Q ss_pred C
Q 010994 465 G 465 (496)
Q Consensus 465 g 465 (496)
|
T Consensus 540 g 540 (895)
T KOG2076|consen 540 G 540 (895)
T ss_pred h
Confidence 7
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=6.7e-16 Score=137.31 Aligned_cols=259 Identities=17% Similarity=0.098 Sum_probs=95.7
Q ss_pred hhHHHhhcCHHHHHHHHHhc-hhc-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 010994 105 LDLIGRVHGFLSAESYFSNL-KDD-EK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ 181 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~-~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 181 (496)
...+.+.|+++.|.++++.. ... +| |...|..+.......++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44455556666666666432 222 23 4556666666777777888888888877766443 55566666666 67778
Q ss_pred CCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010994 182 YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK 261 (496)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 261 (496)
+++|.+++....+.. ++...+...+..+.+.++++.+..+++.+......+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888877777665542 455566667777777788888888887766344444667777777777888888888888888
Q ss_pred HHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010994 262 KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD 341 (496)
Q Consensus 262 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (496)
+..+..+ .|......++..+...|+.+++.++++......+ .+...+..+..++...|+.++|..++++..+.. +.|
T Consensus 171 ~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~-~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAP-DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-CHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 8776543 4566677777777788888877777776555543 555667777788888888888888888877753 336
Q ss_pred cccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 342 TRIPNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
+.....+..++...|+.++|..+.+++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66777777888888888888877766543
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=4.8e-13 Score=125.21 Aligned_cols=295 Identities=11% Similarity=0.039 Sum_probs=212.0
Q ss_pred HHHhhcCHHHHHHHHHhchhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcH
Q 010994 107 LIGRVHGFLSAESYFSNLKDDEKTY-QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV 185 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 185 (496)
.....|+++.|.+.+.+..+..|+. ..+-....+..+.|+++.|.+.+++..+....++....-.....+...|+++.|
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3446789999999998888777753 344455677888899999999999887653222223444457888889999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHH-HHH---HHHHhcCChHHHHHHHH
Q 010994 186 PDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYA-SAA---HFYIKANLIDKASDVLK 261 (496)
Q Consensus 186 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li---~~~~~~~~~~~a~~~~~ 261 (496)
...++.+.+... -+...+..+...+...|++++|.+.+..+. +.++ ++...+. .-. ......+..++..+.+.
T Consensus 173 l~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGL-FDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988742 255678888899999999999999999998 6655 3433332 111 12233333343444555
Q ss_pred HHHHhccc---CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhH-HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010994 262 KAEERLEQ---KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY-ITMLEALMKLGEHEEAEKVLKEWELSG 337 (496)
Q Consensus 262 ~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (496)
.+.+..+. .+...+..+...+...|+.++|.++++...+..+......+ ..........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 55544332 37788888999999999999999999988886652222211 112222234577888999998888763
Q ss_pred CCCCc--ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 338 NSYDT--RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 338 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234 456688999999999999999999655444568888899999999999999999999999865
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=3.9e-11 Score=109.92 Aligned_cols=403 Identities=11% Similarity=0.061 Sum_probs=272.4
Q ss_pred cCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCC-CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHH
Q 010994 56 NGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQT 133 (496)
Q Consensus 56 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 133 (496)
.|...+...|-.=...|-+.|..-.+..+....+.-|+.. -...++..-.+.|.+.+.++-|..+|..+.+..| +...
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl 552 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL 552 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH
Confidence 3566666666666666666666666666666666555211 0112333345666677777777777777777666 4666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA 213 (496)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 213 (496)
|...+..=-..|..++-..+|++.... ++-....|-.....+-..|+...|..++.+..+... .+...|...+.....
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~e 630 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhc
Confidence 776666666677777777777777665 333455565566666677777778777777776532 256667777777777
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 010994 214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR 293 (496)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 293 (496)
+.+++.|..+|.+.. . ..|+..+|.--+..---.++.++|.+++++..+.-+ .=...|..+.+.+-+.++.+.|..
T Consensus 631 n~e~eraR~llakar-~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 631 NDELERARDLLAKAR-S--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred cccHHHHHHHHHHHh-c--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHH
Confidence 778888888877776 2 225555555555555556777778877777666422 223456666777777777777777
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994 294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 373 (496)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (496)
.|..-...++ .....|..+...=-+.|.+-.|..+++...-++++ +...|-..|.+-.+.|+.+.|..++.+.++. +
T Consensus 707 aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 707 AYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred HHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 7765544444 44456666666666777777788888777766433 6677777777777788888887777777665 3
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994 374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM 453 (496)
Q Consensus 374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 453 (496)
+-+...|..-|....+.++-......+++ ..-|+.+...+...+....+++.|.+.|.+..+..+.+-.+
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkk----------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKK----------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHh----------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 33556677777766666665555544444 44577778888888888899999999999998888888889
Q ss_pred HHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 454 YHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 454 ~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
|.-+...+.++| +.-.+++.....
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999 555667766554
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=6.4e-14 Score=128.31 Aligned_cols=286 Identities=10% Similarity=0.052 Sum_probs=221.5
Q ss_pred CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChHHHHHH
Q 010994 181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHI-VLDWSTYASAAHFYIKANLIDKASDV 259 (496)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~ 259 (496)
+..+|...|.....+ +.-+..+...+.++|...+++++|.++|+.+...... .-+...|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 457888888886554 3334466677889999999999999999998722221 24677888877665432 23333
Q ss_pred HH-HHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010994 260 LK-KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN 338 (496)
Q Consensus 260 ~~-~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (496)
+- .+.+ .-+..+.+|-++..+|.-+++.+.|++.|++..+..+ ....+|+.+..-+....++|.|...|+.......
T Consensus 409 Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 32 2333 2346678999999999999999999999998877655 5678899888888999999999999998876421
Q ss_pred CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CH
Q 010994 339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DP 417 (496)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~ 417 (496)
.+...|-.+.-.|.+.++++.|+-.|+++.+-++. +.+....+...+.+.|+.|+|+++++++.. +.| |+
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-------ld~kn~ 557 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH-------LDPKNP 557 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh-------cCCCCc
Confidence 13344555677899999999999999999998776 778888889999999999999999999987 333 44
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCC
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDE 482 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p 482 (496)
..--.....+...+++++|...+++++...|.+...|..++..|.+.| +.|+.-|--|.+..-++
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 444445566777899999999999999999999999999999999999 67777777776644333
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.9e-12 Score=114.34 Aligned_cols=398 Identities=11% Similarity=0.014 Sum_probs=249.7
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCCCCC-cchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHH
Q 010994 65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFA-PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYV 142 (496)
Q Consensus 65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~ 142 (496)
+-..-.-|.+.|.+++|++.|.+.+... ++ |.-+.....+|...|+|+...+.-....+.+|+ +..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 3445556788999999999999999976 34 667777788899999999999999999998887 667777888888
Q ss_pred hcCCHHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCCCCcHHHHHH-HHHHCC--CCCChhhHHHHHHHHhh-----
Q 010994 143 RQRQTDKALSHFRKMK-EMGIALSTLTYNDIMCLYSKTGQYEKVPDVLT-EMKAKN--IFPDNFSYRICINSYGA----- 213 (496)
Q Consensus 143 ~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~--~~p~~~~~~~li~~~~~----- 213 (496)
..|++++|+.=+.-.. -.|+. |..+--.+=+.+-+ .|..-.+ .+.+++ +-|+.....+....+-.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 8899888865332221 11111 11111100011110 0111111 111111 22222222222111110
Q ss_pred --------------------cC---ChHHHHHHHHHhhcCCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHH
Q 010994 214 --------------------RS---DLEGMEIILREMESQPHIVLD-----------WSTYASAAHFYIKANLIDKASDV 259 (496)
Q Consensus 214 --------------------~~---~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~ 259 (496)
.+ .+..|...+.+-.......++ ..+...-...+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 00 122222222221101111111 11111122233446788888888
Q ss_pred HHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010994 260 LKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS 339 (496)
Q Consensus 260 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 339 (496)
|+..+...+. +...|--+..+|....+.++.++.|.......+ .+..+|.--...+.-.+++++|..=|++.....+.
T Consensus 349 ~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 8888775543 333377777888888899999999987776665 66677777777777788889999888888776422
Q ss_pred CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH--
Q 010994 340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-- 417 (496)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-- 417 (496)
+...|..+..+.-+.+++++++..|++.+++-+. -+..|+.....+..++++++|.+.|+.+++..-...++-.+.
T Consensus 427 -~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 -NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 4555666666666888899999999988887433 667888888999999999999999999887211111111111
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK 476 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 476 (496)
.+.-.++ .+.-.+++..|..++++..+..|.....|..|...-.+.| ++|+++|++-.
T Consensus 505 lV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 505 LVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222222 2224488889999999888877888888999998888888 88888887654
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2.9e-12 Score=112.14 Aligned_cols=350 Identities=13% Similarity=0.080 Sum_probs=254.0
Q ss_pred HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhh----hhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhc
Q 010994 69 IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAV----QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQ 144 (496)
Q Consensus 69 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 144 (496)
-..+.+.+.+.+|++.|+....+- .+++.+.-.. +...+.+.|+++.|+.-|+...+..||..+--.|+-++..-
T Consensus 244 gni~~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAI 322 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheec
Confidence 345667788999999999988875 2233333222 23456689999999999999999999966544555566667
Q ss_pred CCHHHHHHHHHHHHHCCCCC------------ChhHHHHH----------------------------------------
Q 010994 145 RQTDKALSHFRKMKEMGIAL------------STLTYNDI---------------------------------------- 172 (496)
Q Consensus 145 g~~~~A~~~~~~m~~~g~~p------------~~~~~~~l---------------------------------------- 172 (496)
|+-++..+.|..|..--..| +....+.-
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 89999999999886542222 21111111
Q ss_pred -----------------------HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH----------------------
Q 010994 173 -----------------------MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC---------------------- 207 (496)
Q Consensus 173 -----------------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---------------------- 207 (496)
..-+.++|+++.|.+++.-+.+...+.-...-+.|
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 11466778999999988877654322111111100
Q ss_pred --------------HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccc
Q 010994 208 --------------INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI 273 (496)
Q Consensus 208 --------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 273 (496)
.+....+|++++|...+++.. ..+..-....|| +.-.+-..|++++|++.|-++... ...+..
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 011123678899999998887 433312222233 445677889999999999887653 336677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994 274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC 353 (496)
Q Consensus 274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (496)
+...+...|-...+...|++++-+.....+ .|+...+.+...|-+.|+-.+|.+.+-+--+- ++.+..+...|..-|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 788888999999999999999986655444 67788999999999999999999887655443 4567888888998899
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994 354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF-DAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS 432 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 432 (496)
...-+++++.+|++..- +.|+..-|..|+..|. +.|++.+|+++|+.... .++-|...+..|++.+...|-
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr------kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR------KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH------hCccchHHHHHHHHHhccccc
Confidence 99999999999998754 5799999999998776 57999999999999886 777888888888888877664
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=8.9e-14 Score=127.37 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=161.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 010994 77 RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK----TYQTYGALLNCYVRQRQTDKALS 152 (496)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 152 (496)
+..+|+..|..+.+.. ..+......+...|...+++++|.++|+.+....| +..+|.+.+-.+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3456666666644433 23344555556666666777777777776666654 45566655544322 11222
Q ss_pred HH-HHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHhhcC
Q 010994 153 HF-RKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP-DNFSYRICINSYGARSDLEGMEIILREMESQ 230 (496)
Q Consensus 153 ~~-~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 230 (496)
.+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+... .
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-~ 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-G 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-c
Confidence 22 2222221 225666777777776666777777766666653 33 45566666666666666666666666665 3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhH
Q 010994 231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY 310 (496)
Q Consensus 231 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 310 (496)
.+. -+..+|.-+...|.+.++++.|+-.|+...+.++ .+.+....+...+.+.|+.++|+++++++....+ .++..-
T Consensus 484 ~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~ 560 (638)
T KOG1126|consen 484 VDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCK 560 (638)
T ss_pred CCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhH
Confidence 222 2333344455666666667777666666655443 4555555666666666666677766666655554 333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC
Q 010994 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT 375 (496)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 375 (496)
.-.+..+...+++++|...++++++.- +-+..++..+...|.+.|+.+.|+.-|--+.+.++++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 334455555666666666666666542 2244555666666666666666666666666554443
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=6.1e-12 Score=108.69 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=219.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 010994 144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEII 223 (496)
Q Consensus 144 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 223 (496)
.|+|.+|.++..+-.+.+-. ....|..-+.+.-..|+.+.+-.++.+..+....++...+-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58899999888887776544 34456666677778888888988888888764455666677777888888888888888
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc-------chHHHHHHHHHhcCCHHHHHHHHH
Q 010994 224 LREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG-------IGYNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
+.++. +.+. -+.........+|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...|+
T Consensus 176 v~~ll-~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLL-EMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHH-HhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88887 5554 56677788888999999999999999988877764443 467777777777766666666776
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC
Q 010994 297 LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT 376 (496)
Q Consensus 297 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 376 (496)
..-. ..+.++..-.+++.-+.++|+.++|.++..+..+.+..|+ . ...-.+.+-++.+.-.+..++-.+..+. +
T Consensus 254 ~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 4333 2346667777888888999999999999999988877665 1 2222345677777777777776655433 5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
+..+.++...|.+.+.|.+|...|+.+++ ..|+..+|+.+..++.+.|+.++|.++.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~-------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK-------LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh-------cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 57888999999999999999999998875 889999999999999999999999998886543
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=7.3e-12 Score=104.96 Aligned_cols=286 Identities=15% Similarity=0.183 Sum_probs=152.0
Q ss_pred CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHHhcCChHHHH
Q 010994 180 GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWS--TYASAAHFYIKANLIDKAS 257 (496)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~ 257 (496)
++.++|.++|-+|.+.. +-+..+-.+|.+.|.+.|..|.|+++.+.+...++...+.. +.-.|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44555555555555421 11222333445555555555555555555552333211111 1223445555566666666
Q ss_pred HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994 258 DVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN----RDYITMLEALMKLGEHEEAEKVLKEW 333 (496)
Q Consensus 258 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 333 (496)
.+|..+.+.+. .-....-.++..|-...+|++|+++-++....++.+.. ..|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66665554321 23344555566666666666666666555544442221 22444555555566677777777776
Q ss_pred HhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC
Q 010994 334 ELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW 413 (496)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 413 (496)
.+.+.+ .+..--.+.+.+...|+++.|.+.++...+.++.--..+...|..+|.+.|+.++...++.++.+ .
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-------~ 278 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-------T 278 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------c
Confidence 665322 34444455666677777777777777777765544455666777777777777777777777765 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHhCC-----CcHHHHHHHHHh
Q 010994 414 KPDPKVITSILSKLGDEGSVQDVEAFV-AALRTVIPMNRQMYHAFIKANIRNG-----KGVDELLDSMKA 477 (496)
Q Consensus 414 ~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g-----~~a~~~~~~m~~ 477 (496)
.++...-..+...-....-.+.|..++ +.+.. .|+...+..+++.-...+ .+.+.+++.|..
T Consensus 279 ~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 279 NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 333333333333333333344444433 34443 566777767766655544 233445555553
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.5e-11 Score=105.83 Aligned_cols=305 Identities=9% Similarity=0.064 Sum_probs=205.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-C-CCHHHHHHHHHHHHhcC
Q 010994 174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHI-V-LDWSTYASAAHFYIKAN 251 (496)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~li~~~~~~~ 251 (496)
.++......+++..-.+.....|+.-+...-+....+.-...|+|.|+.+|+++. +.++ . .|..+|+.++-. +..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~-knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIR-KNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcchhHHHHhHHHHH--Hhh
Confidence 3444555666777777777777765555444445555666778888888888887 3322 1 355666655533 222
Q ss_pred ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010994 252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLK 331 (496)
Q Consensus 252 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (496)
+- .+..+-+-.-..-+--+.|...+.+-|.-.++.++|..+|+...+..+ .....|+.+..-|....+...|.+-++
T Consensus 312 ~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 111221111112234456777778888888889999999998887765 556778888888999999999999999
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994 332 EWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK 411 (496)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (496)
...+.. +.|-..|-.+.++|.-.+...-|+-.|++..+..+. |...|.+|..+|.+.++.++|+.+|.+++.
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~------ 460 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL------ 460 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh------
Confidence 988875 448888889999999999999999999998887554 888999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCCCH---HHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCC
Q 010994 412 GWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV----IPMNR---QMYHAFIKANIRNG--KGVDELLDSMKADGIDE 482 (496)
Q Consensus 412 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p 482 (496)
.-..+...+..|...+-+.++.++|.+.+++..+. ...+. ..---|..-+.+.+ ++|......... | .+
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~ 538 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ET 538 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-Cc
Confidence 33446678888999999999999998888866552 11222 22222344444555 555554444333 2 44
Q ss_pred ChhHHHHHHhhh
Q 010994 483 DEETKEILVCTM 494 (496)
Q Consensus 483 ~~~t~~~l~~~~ 494 (496)
.-.--+.|++.+
T Consensus 539 e~eeak~LlRei 550 (559)
T KOG1155|consen 539 ECEEAKALLREI 550 (559)
T ss_pred hHHHHHHHHHHH
Confidence 444445555443
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=5.8e-10 Score=102.42 Aligned_cols=384 Identities=11% Similarity=0.054 Sum_probs=298.9
Q ss_pred hccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010994 74 KRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALS 152 (496)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 152 (496)
.....+.|.-++....+-- | ....+.-.+.+..-++.|..+++++.+.-| +..+|-+-...=-.+|+.+...+
T Consensus 388 elE~~~darilL~rAvecc-----p-~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-----P-QSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHHHHHHHHHHhc-----c-chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3344555666666555532 1 122234566778888999999999988766 68888887777788899999888
Q ss_pred HHHH----HHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCChHHHHHHHHH
Q 010994 153 HFRK----MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD--NFSYRICINSYGARSDLEGMEIILRE 226 (496)
Q Consensus 153 ~~~~----m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~ 226 (496)
++++ +...|+..+...|-.=...|-..|..-.+..+....+.-|+.-. ..||..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 8765 45678889999999999999999988888888888887776532 45788888899999999999999988
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 010994 227 MESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI 306 (496)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 306 (496)
.. +..+ -+...|......=-..|..+....+|++....- +.....|-.....+-..|++..|..++....+..+ .+
T Consensus 542 al-qvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-ns 617 (913)
T KOG0495|consen 542 AL-QVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NS 617 (913)
T ss_pred HH-hhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-Cc
Confidence 87 4433 556667777766677899999999999988754 35566777778888889999999999998888776 47
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC-HhHHHHHHH
Q 010994 307 NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT-PNSWAVVAA 385 (496)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 385 (496)
...|..-+..-....+++.|..+|.+.... .|+..+|..-+...--.++.++|.+++++.++.- |+ ...|-.+.+
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQ 693 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhH
Confidence 788888888889999999999999988775 5677777776666667889999999999888753 34 457888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 386 GYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
.+-+.++.+.|.+.|..-.+ ..+-....|..+...=-+.|.+-.|..++++..-..|.+...|-..|+.-.+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k------~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTK------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHHHHHHHHHHHHHHhccc------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence 88888898888888877554 333345677777777788889999999999888888999999999999999999
Q ss_pred --CcHHHHHHHHHh
Q 010994 466 --KGVDELLDSMKA 477 (496)
Q Consensus 466 --~~a~~~~~~m~~ 477 (496)
+.|..+..+..+
T Consensus 768 n~~~a~~lmakALQ 781 (913)
T KOG0495|consen 768 NKEQAELLMAKALQ 781 (913)
T ss_pred CHHHHHHHHHHHHH
Confidence 566655554443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=2.5e-11 Score=105.00 Aligned_cols=291 Identities=12% Similarity=0.064 Sum_probs=232.7
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010994 178 KTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKAS 257 (496)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 257 (496)
-.|+|.+|+++..+-.+++-.|- ..|..-..+--..||.+.+-.++.+.. +....++...+-+........|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 35999999999999888776543 456677788889999999999999998 5533477788888889999999999999
Q ss_pred HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-------hhHHHHHHHHHhcCCHHHHHHHH
Q 010994 258 DVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN-------RDYITMLEALMKLGEHEEAEKVL 330 (496)
Q Consensus 258 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 330 (496)
.-++++.+.++ .++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 99999988775 66788899999999999999999999999888774443 34666666666666666655566
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcC
Q 010994 331 KEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEG 410 (496)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 410 (496)
+..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|+ -.....+.+-++.+.-++..++-.+
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~----- 322 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK----- 322 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH-----
Confidence 655443 355677778899999999999999999999999877765 2334456778888888888888776
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCC
Q 010994 411 KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDED 483 (496)
Q Consensus 411 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~ 483 (496)
..+-++..+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+.| .+|.++.++....-..|+
T Consensus 323 -~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 323 -QHPEDPLLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred -hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 3444457888999999999999999999995554 6799999999999999999 688888887665444444
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.2e-11 Score=101.21 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=215.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCh------hhHHHHHHHHhhcCCh
Q 010994 144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN------FSYRICINSYGARSDL 217 (496)
Q Consensus 144 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~ 217 (496)
+.+.++|.++|-+|.+.... +..+.-+|.+.|.+.|..+.|+.+.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 58899999999999886322 5556678889999999999999999998875 332 2344566778889999
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc----chHHHHHHHHHhcCCHHHHHH
Q 010994 218 EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG----IGYNFLISLYASLGNKSEVLR 293 (496)
Q Consensus 218 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 293 (496)
|.|+.+|..+. +.+. .-..+...|+..|-...+|++|+++-+++...+..+.. ..|.-+...+....+.+.|..
T Consensus 124 DRAE~~f~~L~-de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLV-DEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHh-cchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999998 5333 34556677999999999999999999998877665543 235556666667889999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994 294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 373 (496)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (496)
++.+..+..+ ..+..-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+.++.+...
T Consensus 202 ~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9998888766 556666678888999999999999999999986555566778899999999999999999999888654
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHh
Q 010994 374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE---GSVQDVEAFVAALRT 445 (496)
Q Consensus 374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 445 (496)
.++. -..+...-....-.+.|...+.+-+. -+|+...+..++..-... |...+-...++.|..
T Consensus 281 g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~-------r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADA--ELMLADLIELQEGIDAAQAYLTRQLR-------RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccH--HHHHHHHHHHhhChHHHHHHHHHHHh-------hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 4333 34444444444445666666655554 589999999999876433 344455555555544
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-10 Score=104.52 Aligned_cols=285 Identities=11% Similarity=-0.026 Sum_probs=226.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 209 (496)
++.....-.+-+...+++.+..++.+...+. .+++...+..-|.++.+.|+..+-..+=.+|.+. .+-...+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4455556667778889999999999999887 3456777777778899999999988888888886 3446788999998
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 010994 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS 289 (496)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (496)
-|.-.|+..+|.++|.+.. ..+. .=...|-.....|+-.|.-|+|+..|....+.-+ -..-.+--+.--|.+.++.+
T Consensus 321 YYl~i~k~seARry~SKat-~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKAT-TLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHh-hcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHH
Confidence 8888999999999998876 3332 1223455688899999999999999988766432 22223334455678899999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----CcccHHHHHHHHHhcCchhHHHH
Q 010994 290 EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSG--NSY----DTRIPNAVIIGYCNNGLVQNAEA 363 (496)
Q Consensus 290 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~a~~ 363 (496)
.|.++|.......+ .|+...+-+.-.....+.+.+|..+|+.....- ..+ -..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999998888777 777888888888888899999999998877321 111 23457889999999999999999
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHh
Q 010994 364 ILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLG 428 (496)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 428 (496)
.+++.+....+ |..++.++.-.|...|+++.|++.|.+++. +.|+..+...++..+.
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~-------l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA-------LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCccHHHHHHHHHHH
Confidence 99999987665 899999999999999999999999999985 8999988888776543
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.6e-08 Score=89.72 Aligned_cols=199 Identities=13% Similarity=0.117 Sum_probs=120.6
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch------hHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCC
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR------DYITMLEAL---MKLGEHEEAEKVLKEWELSGNSY 340 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 340 (496)
.|-.+|-..+..-...|+.+...++|+......+..... .|..+=.+| ....+.+.+.++++...+. ++.
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 445566666666666777777777777666655422111 122121121 2356777777777777663 333
Q ss_pred CcccHHHHHHHH----HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-
Q 010994 341 DTRIPNAVIIGY----CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP- 415 (496)
Q Consensus 341 ~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p- 415 (496)
...||..+=-.| .++.++..|.+++...+- ..|-..+|...|..-.+.++++....+|++.++ ..|
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-------~~Pe 469 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-------FSPE 469 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cChH
Confidence 444444333333 356677777777766553 456677777777777777778888888877776 444
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhC
Q 010994 416 DPKVITSILSKLGDEGSVQDVEAFVAALRTV--IPMNRQMYHAFIKANIRNG--KGVDELLDSMKAD 478 (496)
Q Consensus 416 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 478 (496)
|..+|......=...|+.+.|..+|....+. .......|.+.|+--...| +.|..+++++.+.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 4466766666666777888888888766553 2223345555555555566 6777777777653
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=7.3e-09 Score=91.80 Aligned_cols=406 Identities=9% Similarity=0.021 Sum_probs=299.5
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHH
Q 010994 58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGA 136 (496)
Q Consensus 58 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 136 (496)
.+.+...|-....-=..++++..|..+|+..+.... -+.......+..=.+...+..|..+++++...-|- ...|-.
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 444555555555555667888999999999988652 22333333455566888899999999998887664 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
.+..=-..|++..|.++|++-.+. .|+...|++.|+.=.+-+.++.|..+|++.+- +.|+..+|---.+.-.+.|+
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 666666779999999999998875 79999999999999999999999999999886 46999999988888889999
Q ss_pred hHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc-cchHHHHHHHHHhcCCHHHHHHH
Q 010994 217 LEGMEIILREMESQPHI-VLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD-GIGYNFLISLYASLGNKSEVLRL 294 (496)
Q Consensus 217 ~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 294 (496)
...|.++|+......+- ..+...+.+....=.++..++.|.-+|+-..++.++.. ...|..+...=-+-|+.....+.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 99999999887733221 12233344444444567788999999998888654322 23454444444455554443332
Q ss_pred --------HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHH--------HHhcC
Q 010994 295 --------WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT--RIPNAVIIG--------YCNNG 356 (496)
Q Consensus 295 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g 356 (496)
|+.+....+ .|-.+|--.++.-...|+.+...++++.....- +|-. ..|...|-. -....
T Consensus 303 Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444 677788888888888999999999999998763 3321 112222211 12468
Q ss_pred chhHHHHHHHHHHhcCCCCCHhHHH----HHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994 357 LVQNAEAILEDLVEKGKATTPNSWA----VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS 432 (496)
Q Consensus 357 ~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 432 (496)
+.+.+.++|+..++. ++....||. ....--.++.+...|.+++..++ |.-|-..+|...|..=.+.++
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-------G~cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-------GKCPKDKLFKGYIELELQLRE 452 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-------ccCCchhHHHHHHHHHHHHhh
Confidence 899999999999884 332334444 34444557889999999999986 789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCC
Q 010994 433 VQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADG 479 (496)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g 479 (496)
++.+..++++...-.|.+..+|......-...| +.|..+|.-..++.
T Consensus 453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 999999999999988889999998888888888 88999998887653
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=6.1e-11 Score=115.45 Aligned_cols=266 Identities=11% Similarity=-0.006 Sum_probs=175.9
Q ss_pred ChhhHHHHHHHHhh-----cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHH
Q 010994 200 DNFSYRICINSYGA-----RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK---------ANLIDKASDVLKKAEE 265 (496)
Q Consensus 200 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~ 265 (496)
+...|...+++-.. .+++++|...|++.. +.++ -+...|..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-NMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34445455554321 234678888898887 5543 345556656555442 2457889999998887
Q ss_pred hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 010994 266 RLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP 345 (496)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 345 (496)
..+ .+..++..+...+...|++++|...|++.....+ .+...+..+..++...|++++|...+++..+..+. +...+
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 654 5667788888888899999999999998888765 55667788888899999999999999998887433 22233
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHHHH
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK-VITSIL 424 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l~ 424 (496)
..++..+...|++++|...++++.+...+-+...+..+...+...|+.++|...+.++.. ..|+.. ..+.+.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-------~~~~~~~~~~~l~ 482 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-------QEITGLIAVNLLY 482 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-------ccchhHHHHHHHH
Confidence 344555667889999999998887654322455677788888899999999999988764 345443 344455
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHhCC
Q 010994 425 SKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSMKADG 479 (496)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g 479 (496)
..+...| +.|...++.+.+...........+-..|.-.| .+...+++++.+.|
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 536 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNED 536 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHHhhccc
Confidence 5566666 47777777665532111111111333444455 34445557777653
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=9.5e-11 Score=101.72 Aligned_cols=200 Identities=16% Similarity=0.094 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 316 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (496)
...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.++......+ .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 45555666677777777777777776655432 3445566666677777777777777776665544 344555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994 317 LMKLGEHEEAEKVLKEWELSGNS-YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 395 (496)
+...|++++|...++...+.... .....+..+...+...|++++|...+.+..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 67777777777777776653211 12334555666677777777777777777765433 45566677777777777777
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
|...++++.. . .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQ-----T-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHH-----h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777766 2 233445555666666677777777777666544
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=6.7e-11 Score=115.17 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh---------cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK---------TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
++++|...|++..+.... +...|..+..++.. .+++++|...+++..+.+. -+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 456666666666554221 33344444433321 1234566666666665421 244555555556666666
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 010994 217 LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
+++|...|++.. +.++ .+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al-~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQAN-LLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 666666666665 4432 34455555666666666666666666666554432 22222333334455666666666666
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 297 LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 297 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
.........+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..| +.|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 55544321223344555556666666666666666654431 112223344444455555 355555555443
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=1.4e-08 Score=93.31 Aligned_cols=424 Identities=11% Similarity=0.096 Sum_probs=273.3
Q ss_pred cccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCC--CCh--hhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCc
Q 010994 23 YTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNK--VRV--GELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAP 98 (496)
Q Consensus 23 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (496)
+++...+..+..-+++..+...++ -++.+.+.|+. +|. ..|++|.+.|.+.|.+++|.++|++.++.- .+.
T Consensus 207 kSn~qlw~elcdlis~~p~~~~sl--nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v---~tv 281 (835)
T KOG2047|consen 207 KSNHQLWLELCDLISQNPDKVQSL--NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV---MTV 281 (835)
T ss_pred cchhhHHHHHHHHHHhCcchhccc--CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---eeh
Confidence 334444555555555544433322 23444444433 333 468999999999999999999999999875 566
Q ss_pred chhhhhhhHHHhhcC----------------------HHHHHHHHHhchhc------------CC-CHHHHHHHHHHHHh
Q 010994 99 CDHAVQLDLIGRVHG----------------------FLSAESYFSNLKDD------------EK-TYQTYGALLNCYVR 143 (496)
Q Consensus 99 ~~~~~~~~~~~~~~~----------------------~~~A~~~~~~~~~~------------~~-~~~~~~~li~~~~~ 143 (496)
..++.+.+.|++... ++.....|+.+... +| ++..|..-+..+
T Consensus 282 rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-- 359 (835)
T KOG2047|consen 282 RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-- 359 (835)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--
Confidence 677776666653322 23333444443322 23 455565555444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC------hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhc
Q 010994 144 QRQTDKALSHFRKMKEMGIALS------TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD---NFSYRICINSYGAR 214 (496)
Q Consensus 144 ~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 214 (496)
.|+..+-...|.+..+. +.|. ...|..+...|-..|+.+.|..+|++..+-..+-- ..+|..-...-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 57788888888887664 3332 23588889999999999999999999887643321 34455555666677
Q ss_pred CChHHHHHHHHHhhcCCC----------CCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994 215 SDLEGMEIILREMESQPH----------IVL------DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL 278 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 278 (496)
.+++.|.++++....-+. .++ +...|...++.--..|-++....+|+++.+..+ .++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 888999998887751111 111 123344455555567888889999999887655 333333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYIN-RDYITMLEALMK---LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC- 353 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 353 (496)
...+-.+.-++++.++|++-.....-|.. ..|+.-+.-+.+ ...++.|..+|++..+ |++|... ..+.-.|+
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~ 594 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTIYLLYAK 594 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHHHHHHHH
Confidence 33445667788999999876666555555 345555554433 3468999999999998 5554432 22223333
Q ss_pred ---hcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH---HHH
Q 010994 354 ---NNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS---ILS 425 (496)
Q Consensus 354 ---~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~---l~~ 425 (496)
+.|-...|+.++++.... +.+. ...||..|.--...=-+.....+|+++++ .-|+...-.. ...
T Consensus 595 lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-------~Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-------SLPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH-------hCChHHHHHHHHHHHH
Confidence 458888999999997654 3322 23678777665554445667788999987 4566654433 334
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCC
Q 010994 426 KLGDEGSVQDVEAFVAALRTVIPM--NRQMYHAFIKANIRNGK 466 (496)
Q Consensus 426 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 466 (496)
.=++.|..+.|..++....+..+| +...|.+.=.--.+.|+
T Consensus 667 lEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 667 LETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 457889999999999987776555 45668888777888883
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=1e-08 Score=94.49 Aligned_cols=393 Identities=14% Similarity=0.106 Sum_probs=221.9
Q ss_pred HHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHH
Q 010994 72 LRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKA 150 (496)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 150 (496)
+...+++...+...+.+.+.. +-.++++..-.-.+...|+-++|..........++ +.+.|..+.-.+-...++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 346667777777777777743 34555555555566667777777777766666554 566677776666667777777
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcC
Q 010994 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQ 230 (496)
Q Consensus 151 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 230 (496)
++.|......+.. |...|.-+.-.-++.++++.....-.++.+.. +.....|..+..++.-.|+...|..++++....
T Consensus 95 iKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777776665332 56666665555566666666666666655531 123344555666666666777777666666532
Q ss_pred CCCCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 010994 231 PHIVLDWSTYASAA------HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR 304 (496)
Q Consensus 231 ~~~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 304 (496)
....|+...|.... ....+.|..+.|.+.+.......+ .....-..-...+.+.++.++|..++.......+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP- 250 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP- 250 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-
Confidence 22335544443322 223345555555555554332211 1112222334445566666666666665554432
Q ss_pred CCchhHHHHHHHHHhcCCHHHHH-HHH----------------------------------HHHHhcCCCCCcccHHHHH
Q 010994 305 YINRDYITMLEALMKLGEHEEAE-KVL----------------------------------KEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~-~~~----------------------------------~~~~~~~~~~~~~~~~~l~ 349 (496)
.+...|-.+..++.+..+..++. .+| ....+.|+++ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 22222222333332222222222 333 3333333322 233333
Q ss_pred HHHHhcCchhHHHHHHHHHHh----cC----------CCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC
Q 010994 350 IGYCNNGLVQNAEAILEDLVE----KG----------KATTPN--SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW 413 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~----~~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 413 (496)
..|-.-...+-..++.-.+.. .| -+|... ++-.++..+-..|+++.|..+++.++. .
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-------H 400 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-------H 400 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-------c
Confidence 333222222111111111111 11 134444 345677888999999999999999975 6
Q ss_pred CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCC
Q 010994 414 KPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGI 480 (496)
Q Consensus 414 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~ 480 (496)
.|+. ..|..-.+.+...|++++|..++++..+...+|...-.--..-..+.+ ++|..+.-.....|.
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6765 466666788899999999999999998876677665545555566666 777777777766664
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=1.5e-10 Score=109.70 Aligned_cols=91 Identities=14% Similarity=0.011 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhc
Q 010994 48 PELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD 127 (496)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 127 (496)
.++-.+...|+.|+..+|.++|..||..|+.+.|- +|..|.-+. .+.+...+...+......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence 35667777899999999999999999999999998 888887766 3444444444444444444443332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH
Q 010994 128 EKTYQTYGALLNCYVRQRQTDK 149 (496)
Q Consensus 128 ~~~~~~~~~li~~~~~~g~~~~ 149 (496)
.|...+|..|..+|...||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 2444555555555555555443
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=3.8e-11 Score=100.85 Aligned_cols=238 Identities=13% Similarity=0.147 Sum_probs=187.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 314 (496)
.|+.--+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..+-..|.+..+++.|+.++.+-....+ .++....-+.
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~A 297 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQA 297 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhH
Confidence 45555577888999999999999888877664 36667888888889999999999998887666544 4444445567
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 394 (496)
+.+-..++.++|.++++...+.. +.++.....+...|.-.++.+.|+..++++.+.|+. ++..|+.+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77778888999999999888764 346666667777788888999999999999998887 8888898988898999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHH
Q 010994 395 RGFQCMKAALSVYVEGKGWKPDP--KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDE 470 (496)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~ 470 (496)
-++..|++++. .--.|+. .+|..+.......||+..|.+.|+......+.+...+|.|.-.-.+.| ++|..
T Consensus 376 ~~L~sf~RAls-----tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 376 LVLPSFQRALS-----TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hhHHHHHHHHh-----hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 99999999887 3333443 577778778888899999999998777777778888988888888888 78888
Q ss_pred HHHHHHhCCCCCCh
Q 010994 471 LLDSMKADGIDEDE 484 (496)
Q Consensus 471 ~~~~m~~~g~~p~~ 484 (496)
+++...+ +.|+.
T Consensus 451 ll~~A~s--~~P~m 462 (478)
T KOG1129|consen 451 LLNAAKS--VMPDM 462 (478)
T ss_pred HHHHhhh--hCccc
Confidence 8888776 44553
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=1.7e-09 Score=101.84 Aligned_cols=295 Identities=14% Similarity=0.153 Sum_probs=173.0
Q ss_pred hhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhc-
Q 010994 103 VQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY-NDIMCLYSKT- 179 (496)
Q Consensus 103 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~- 179 (496)
+...++...|++++|+..+......-+| ..........+.+.|+.++|..+|..+.+++ |+-..| ..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3345555566666666666554444344 4445566667777777777777777776663 333333 3333333111
Q ss_pred ----CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH-HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChH
Q 010994 180 ----GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE-GMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254 (496)
Q Consensus 180 ----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 254 (496)
.+.+....+|+++...- |.......+.-.+..-..+. .+..++..+. ..|+ |+ +|+.+-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l-~Kgv-Ps--lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQL-RKGV-PS--LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHH-hcCC-ch--HHHHHHHHHcChhHHH
Confidence 13344556666665432 33333222222222212222 2334445555 5566 32 3444555555444444
Q ss_pred HHHHHHHHHHHhc--------------ccCcc--chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010994 255 KASDVLKKAEERL--------------EQKDG--IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALM 318 (496)
Q Consensus 255 ~a~~~~~~m~~~~--------------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 318 (496)
-...++....... -.|.. .++..+.+.|-..|++++|+++.+......+ ..+..|..-.+.+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 4455555443210 11222 3445667777888888888888887777654 44567777788888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhH--------HHHHHHHHHhc
Q 010994 319 KLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNS--------WAVVAAGYFDA 390 (496)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------~~~l~~~~~~~ 390 (496)
+.|++.+|...++........ |..+-+..+..+.++|++++|.+++......+..|-... ......+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776433 666666777777888888888888888776654332221 23456778888
Q ss_pred CChHHHHHHHHHHHHhh
Q 010994 391 GKTERGFQCMKAALSVY 407 (496)
Q Consensus 391 ~~~~~a~~~~~~~~~~~ 407 (496)
|++..|+..|....+.|
T Consensus 319 ~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKHF 335 (517)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88888888887777644
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=7e-13 Score=82.59 Aligned_cols=50 Identities=30% Similarity=0.477 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 010994 129 KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK 178 (496)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 178 (496)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777777653
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=1.7e-10 Score=100.07 Aligned_cols=200 Identities=16% Similarity=0.083 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 210 (496)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4566667777777777777777777776553 22456666677777777777777777777766532 244556666666
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994 211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290 (496)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (496)
+...|++++|.+.+++.............+..+..++...|++++|...+++.....+ .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777652222222334455566666666777777777766655432 234455566666666666666
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWE 334 (496)
Q Consensus 291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (496)
|...++......+ .+...+..+...+...|+.+.|..+.+.+.
T Consensus 188 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666665555422 333444455555556666666666555544
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.5e-11 Score=101.97 Aligned_cols=230 Identities=13% Similarity=0.051 Sum_probs=163.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH-HHHHHHhh
Q 010994 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR-ICINSYGA 213 (496)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~ 213 (496)
+-+..+|.+.|-+.+|.+.|+.-.+. .|-+.||-.|-..|.+..++..|+.+|.+-.+. -|-.+||. -..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56777788888888888877776655 456677777777888888888888777776653 45555543 35567777
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 010994 214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR 293 (496)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 293 (496)
.++.++|.++++... +... .++.....+...|.-.++++-|++.|+++.+.|+ .+...|+.+.-+|.-.++++-++.
T Consensus 303 m~~~~~a~~lYk~vl-k~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVL-KLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHH-hcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 778888888887776 4433 4555555666777777888888888888877776 667777777777777788888887
Q ss_pred HHHHHHhhcCCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 010994 294 LWDLEKTACKRYIN--RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK 371 (496)
Q Consensus 294 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (496)
-|......-..|+. ..|-.+.......||+..|.+.|+.....+. .+...+|.|.-.-.+.|+++.|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77766665544443 4566677777777888888888877776542 24566777777777788888888888777664
Q ss_pred C
Q 010994 372 G 372 (496)
Q Consensus 372 ~ 372 (496)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=4.3e-11 Score=113.27 Aligned_cols=274 Identities=15% Similarity=0.106 Sum_probs=150.8
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCC
Q 010994 152 SHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQP 231 (496)
Q Consensus 152 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 231 (496)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-.....+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566777777777777777777777777777776 7777776666666777777777777777665433
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHH
Q 010994 232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI 311 (496)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 311 (496)
.|...+|..|..+|...||+.. |+...+ ....+...+...|.......++... .+.......-.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~--~c~p~~lpda~ 143 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKI--HCCPHSLPDAE 143 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhc--ccCcccchhHH
Confidence 3667777777777777777665 222221 1223334445555555544444321 11111112222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 391 (496)
..+.-..-.|-++.+.+++..+...... .+ +..++.-+.. ......++........-.|++.+|...+..-...|
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 3333344455555555555444322111 00 0111221111 11222222222222111366667777777777777
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCC
Q 010994 392 KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 465 (496)
+.+.|..++.+|.+ .|++.+...|..++.+ .|+..-+..+++.|.. ++.|+..|+.-.+..+..+|
T Consensus 219 ~~d~Ak~ll~emke-----~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKE-----KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred chhhHHHHHHHHHH-----cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 77777777777766 6666666655555544 5566666666665555 46666666666666666655
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.8e-08 Score=85.88 Aligned_cols=396 Identities=9% Similarity=0.010 Sum_probs=252.5
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCC------------------CCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGIC------------------VFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE 128 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 128 (496)
.+++...+.+.+..|++-|....+.... +.+.+.....+..+...++-+.|...+...+...
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 3444445556677777777776654311 1122333345777788888999998888877654
Q ss_pred CCHHHHHHHHHHHHhc-CC-HHHH-------------HHHHHHHHHCCC---------------CCChhHHHHHHHHH--
Q 010994 129 KTYQTYGALLNCYVRQ-RQ-TDKA-------------LSHFRKMKEMGI---------------ALSTLTYNDIMCLY-- 176 (496)
Q Consensus 129 ~~~~~~~~li~~~~~~-g~-~~~A-------------~~~~~~m~~~g~---------------~p~~~~~~~l~~~~-- 176 (496)
..+.. |.++..+.+. ++ +++. +..+.-..+.++ +|+..+....+.++
T Consensus 128 r~p~i-nlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq 206 (564)
T KOG1174|consen 128 RSPRI-NLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ 206 (564)
T ss_pred cchhH-HHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH
Confidence 43332 3333333222 22 2222 122222222222 22223333333333
Q ss_pred HhcCCCCcHHHHHHHHHHCC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHH
Q 010994 177 SKTGQYEKVPDVLTEMKAKN-IFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK 255 (496)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 255 (496)
+-.++...+...+-.+.... ++.|+.....+.+++...|+.+.|+..|++.. ..++ -+..........+...|+.++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-~~dp-y~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-CANP-DNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-hCCh-hhhhhHHHHHHHHHhccCHhh
Confidence 33445555555544444332 55677788889999999999999999999887 4443 333333444455677888888
Q ss_pred HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 256 ASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 256 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
...+...+.... .-....|..-+.......+++.|+.+-++..+..+ .+...+..-...+...|+.++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888877765422 23444555556666777888889888887766554 4556666667778889999999999988876
Q ss_pred cCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHHh-cCChHHHHHHHHHHHHhhhcCCCC
Q 010994 336 SGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVA-AGYFD-AGKTERGFQCMKAALSVYVEGKGW 413 (496)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ 413 (496)
.. +-+..+|..|+.+|...|++.+|...-+...+. ..-+..+...+. ..|.- ..--++|-.++++.+. +
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-------~ 433 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-------I 433 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-------c
Confidence 53 347788999999999999999988766655443 122555555552 33332 2334778888888765 6
Q ss_pred CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 414 KPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 414 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
.|+. ...+.+...|...|..+.+..+++..... -+|....+.|.+.+...+ ++|++.|.....
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh-ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6764 46667778888889999999998876653 477778888888888777 778887777665
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=3.6e-08 Score=90.78 Aligned_cols=400 Identities=11% Similarity=0.101 Sum_probs=240.8
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC-------C-
Q 010994 58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE-------K- 129 (496)
Q Consensus 58 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~- 129 (496)
.+-....|...+....+.+-++-++.+|+..++- +|......+..++..+++++|.+.+..+...+ +
T Consensus 134 vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkS 208 (835)
T KOG2047|consen 134 VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKS 208 (835)
T ss_pred hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccc
Confidence 3344456677777777778888888888888874 47777778888899999999998888876552 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhH
Q 010994 130 TYQTYGALLNCYVRQRQTDKAL---SHFRKMKEMGIALS--TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSY 204 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 204 (496)
+...|.-+-+..++.-+.-.-+ .++..+..+ -+| ...|++|.+.|.+.|.+++|.++|++..+.- .+..-|
T Consensus 209 n~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDF 284 (835)
T KOG2047|consen 209 NHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDF 284 (835)
T ss_pred hhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhH
Confidence 4667777777776655433322 233333322 234 3468999999999999999999999988752 234445
Q ss_pred HHHHHHHhhcC----------------------ChHHHHHHHHHhhcCCCCC----------CCHHHHHHHHHHHHhcCC
Q 010994 205 RICINSYGARS----------------------DLEGMEIILREMESQPHIV----------LDWSTYASAAHFYIKANL 252 (496)
Q Consensus 205 ~~li~~~~~~~----------------------~~~~a~~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~~~ 252 (496)
+.+.++|+.-. +++....-|+.+......- -++..|.. ..-...|+
T Consensus 285 t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~ 362 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGN 362 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCC
Confidence 55555554311 1223334444444111110 11111111 11123466
Q ss_pred hHHHHHHHHHHHHhcccCc------cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhcCC
Q 010994 253 IDKASDVLKKAEERLEQKD------GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI----NRDYITMLEALMKLGE 322 (496)
Q Consensus 253 ~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 322 (496)
..+-..+|.+.... +.|. ...|..+...|-.+|+.+.|..+|++...-.- +. ..+|..-...=.+..+
T Consensus 363 ~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y-~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 363 AAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY-KTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred hHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-cchHHHHHHHHHHHHHHHhhhh
Confidence 77777788777653 2222 24588888889999999999999987655433 22 2334444455566777
Q ss_pred HHHHHHHHHHHHhcCCC-----------------CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994 323 HEEAEKVLKEWELSGNS-----------------YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA 385 (496)
Q Consensus 323 ~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 385 (496)
++.|.++++......-. -+..+|...++.--..|-++....+++++.+..+. ++........
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAm 519 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAM 519 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 88888887766532111 02234555555555678888888888888887665 4444444444
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q 010994 386 GYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGD---EGSVQDVEAFVAALRTVIPMNRQMYHAFIKA- 460 (496)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~- 460 (496)
-+....-++++.+.|++-+.. --.|+. ..|+..+.-+.+ .-+.+.|..+|++..++.||...-+-.|+.+
T Consensus 520 fLEeh~yfeesFk~YErgI~L-----Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISL-----FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCcc-----CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455556677777777775541 122443 466666555433 2467778888887777776544322222222
Q ss_pred -HHhCC--CcHHHHHHHHH
Q 010994 461 -NIRNG--KGVDELLDSMK 476 (496)
Q Consensus 461 -~~~~g--~~a~~~~~~m~ 476 (496)
--+.| ..|+.++++.-
T Consensus 595 lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 12234 56777776643
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=8.4e-13 Score=82.25 Aligned_cols=50 Identities=34% Similarity=0.652 Sum_probs=42.3
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994 164 LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA 213 (496)
Q Consensus 164 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 213 (496)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888764
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.4e-08 Score=90.13 Aligned_cols=425 Identities=11% Similarity=0.060 Sum_probs=241.5
Q ss_pred ccHHhhhccCCCCCCCcHHH---HHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhh
Q 010994 30 TTLYSIISPLGNPGTRIEPE---LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLD 106 (496)
Q Consensus 30 ~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (496)
..++..+.+.+... ...+. ...+.. +.+-+...+..-+-++.+.++|++|+.+.+.-... ........=.
T Consensus 13 ~~l~t~ln~~~~~~-e~e~a~k~~~Kil~-~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-----~~~~~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNG-EYEEAVKTANKILS-IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-----LVINSFFFEK 85 (652)
T ss_pred HHHHHHHHHhccch-HHHHHHHHHHHHHh-cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-----hhcchhhHHH
Confidence 45666666555422 22222 233322 34566667777777888889999998554432211 1111111223
Q ss_pred HH--HhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCCC
Q 010994 107 LI--GRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYS-KTGQYE 183 (496)
Q Consensus 107 ~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~ 183 (496)
+| .+.++.++|+..++..... |..+...-...+.+.|++++|+++|+.+.+.+.+ .+..-+++-+ ..+--.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRL--DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHcccHHHHHHHHhccccc--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhh
Confidence 33 4788899999888843332 3445555567788899999999999998777432 2222222111 111111
Q ss_pred cHHHHHHHHHHCCCCCChhhHHHHH---HHHhhcCChHHHHHHHHHhh-------cCCCCC-CC----HHH-HHHHHHHH
Q 010994 184 KVPDVLTEMKAKNIFPDNFSYRICI---NSYGARSDLEGMEIILREME-------SQPHIV-LD----WST-YASAAHFY 247 (496)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~~~-------~~~~~~-~~----~~~-~~~li~~~ 247 (496)
.+ +.+......| ..+|..+. ..+...|++..|+++++... .+.+.. .+ ..+ -.-+...+
T Consensus 160 ~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 160 QV----QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hH----HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 11 1222223333 23444443 34567899999999988772 011111 11 111 12344566
Q ss_pred HhcCChHHHHHHHHHHHHhcccCccch----HHHHHHHHHhcCCHH----------------H-----------------
Q 010994 248 IKANLIDKASDVLKKAEERLEQKDGIG----YNFLISLYASLGNKS----------------E----------------- 290 (496)
Q Consensus 248 ~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l~~~~~~~~~~~----------------~----------------- 290 (496)
-..|+.++|..+|...+...+ +|... -|.++..-....-++ .
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999998877654 43321 122211110000000 0
Q ss_pred ---------HHHHHHHHHhhcCCCCchhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh
Q 010994 291 ---------VLRLWDLEKTACKRYINRDYITMLEALMK--LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ 359 (496)
Q Consensus 291 ---------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (496)
..++.+.............+..++..+.+ ......+..++...-+....-...+.-.++......|+++
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 00011100111111122344455554433 2346677777777766533322345556677788899999
Q ss_pred HHHHHHH--------HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhcc
Q 010994 360 NAEAILE--------DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDE 430 (496)
Q Consensus 360 ~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 430 (496)
.|.+++. .+.+.+..|- +...+...+.+.++.+.|..++.+++........-.+.. .++......-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 6666555544 456677778888888888888888877442111122211 2233333344567
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHH
Q 010994 431 GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSM 475 (496)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~m 475 (496)
|+-++|..+++++.+..++|..+...++.+|++.. +.|..+-+.+
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 99999999999999999999999999999999999 7777665543
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.6e-09 Score=96.32 Aligned_cols=151 Identities=9% Similarity=0.065 Sum_probs=122.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 397 (496)
.-.|+.-.|..-|+..++.... +...|--+..+|....+.++-...|+...+.++. |+.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 3467888888888888876433 2233777777888888999999999998888766 7778888888888888999999
Q ss_pred HHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHH
Q 010994 398 QCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDS 474 (496)
Q Consensus 398 ~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~ 474 (496)
.-|++++. +.|+ ...|..+..+..+.++++++...|+..+..+|..+.+|+.....+...+ +.|.+.|+.
T Consensus 415 aDF~Kai~-------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 415 ADFQKAIS-------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHhh-------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 99999876 6664 4577777777888889999999999888888888999999999888888 788888887
Q ss_pred HHh
Q 010994 475 MKA 477 (496)
Q Consensus 475 m~~ 477 (496)
..+
T Consensus 488 ai~ 490 (606)
T KOG0547|consen 488 AIE 490 (606)
T ss_pred HHh
Confidence 765
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=3.9e-09 Score=99.41 Aligned_cols=296 Identities=15% Similarity=0.049 Sum_probs=209.4
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHH-HHHHHHHHHHhc
Q 010994 66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQ-TYGALLNCYVRQ 144 (496)
Q Consensus 66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~ 144 (496)
-.....+...|++++|++.++.-.+.- .-..........++.+.|+.++|...+..+...+|+-. -|..+..+..-.
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 334556788999999999998865543 23345556668999999999999999999999999644 455555655322
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH
Q 010994 145 -----RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY-EKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE 218 (496)
Q Consensus 145 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 218 (496)
.+.+....+|+++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|......+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 35788889999887763 3433333333222222223 2355566777777865 35666666676665655
Q ss_pred HHHHHHHHhhcC---C----------CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHH
Q 010994 219 GMEIILREMESQ---P----------HIVLDW--STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYA 283 (496)
Q Consensus 219 ~a~~~~~~~~~~---~----------~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 283 (496)
-..+++...... . .-+|+. .++..+...|-..|++++|++++++.+++.+ ..+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 555665554311 1 112443 2446678889999999999999999888653 34677888899999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc--------HHHHHHHHHhc
Q 010994 284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRI--------PNAVIIGYCNN 355 (496)
Q Consensus 284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~ 355 (496)
..|++.+|.+.++....... .|-..-+-.+..+.+.|++++|.+++....+.+..|.... ......+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777655 6667777788889999999999999999987765333222 24556788899
Q ss_pred CchhHHHHHHHHHHh
Q 010994 356 GLVQNAEAILEDLVE 370 (496)
Q Consensus 356 g~~~~a~~~~~~~~~ 370 (496)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999887776654
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=1.8e-07 Score=88.28 Aligned_cols=372 Identities=13% Similarity=0.024 Sum_probs=212.0
Q ss_pred CcchhhhhhhHHHhhcCHHHHHHHHHhchhcC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHH
Q 010994 97 APCDHAVQLDLIGRVHGFLSAESYFSNLKDDE-KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL-STLTYNDIMC 174 (496)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~ 174 (496)
++..+..+.-.+...|+++.+.+.|++....- .....|+.+...|...|.-..|..+++.-......| |...+-..-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 34444444445556666666666666554332 235566666666666777666766666544332122 3333333333
Q ss_pred HHHh-cCCCCcHHHHHHHHHHC--C--CCCChhhHHHHHHHHhhcC-----------ChHHHHHHHHHhhcCCCCCCCHH
Q 010994 175 LYSK-TGQYEKVPDVLTEMKAK--N--IFPDNFSYRICINSYGARS-----------DLEGMEIILREMESQPHIVLDWS 238 (496)
Q Consensus 175 ~~~~-~~~~~~a~~~~~~m~~~--~--~~p~~~~~~~li~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~ 238 (496)
.|.+ .+.+++++++-.+.... + -......|..+.-+|...- ...++.+.+++.. +.+. .|..
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-~~d~-~dp~ 479 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-QFDP-TDPL 479 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-hcCC-CCch
Confidence 3332 24455555555444441 1 0112233444433333211 1234555566665 3332 2222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC----Cc-------
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY----IN------- 307 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~------- 307 (496)
+...+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+......+.. +.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 2222444456666677777777766665555666666666666666677777776666444433210 00
Q ss_pred --------hhHHHHHHHHHh---------c--------------CCHHHHHHHHHHH----H----hcC---------CC
Q 010994 308 --------RDYITMLEALMK---------L--------------GEHEEAEKVLKEW----E----LSG---------NS 339 (496)
Q Consensus 308 --------~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~----~----~~~---------~~ 339 (496)
.|...++...-. . ++..+|......+ . ..+ ..
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 000011111000 0 0000111000000 0 000 11
Q ss_pred CCc--------ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994 340 YDT--------RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK 411 (496)
Q Consensus 340 ~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (496)
|+. ..|......+.+.++.++|...+.+.....+. ....|......+...|+.++|.+.|..++.
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~------ 712 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA------ 712 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh------
Confidence 111 13445566677788888888888887765433 556777777888899999999999999986
Q ss_pred CCCCCH-HHHHHHHHHHhccCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhC
Q 010994 412 GWKPDP-KVITSILSKLGDEGSVQDVEA--FVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKAD 478 (496)
Q Consensus 412 ~~~p~~-~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 478 (496)
+.|+. ....++...+.+.|+..-|.. ++..+.+..|.+...|-.++..+.+.| +.|.+.|+...+.
T Consensus 713 -ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 -LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred -cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77765 588899999999998888877 888888888999999999999999999 7888999887653
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=3.6e-09 Score=98.47 Aligned_cols=243 Identities=17% Similarity=0.128 Sum_probs=173.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHhhcC----CCC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHh-----cc-
Q 010994 201 NFSYRICINSYGARSDLEGMEIILREMESQ----PHI-VLDWST-YASAAHFYIKANLIDKASDVLKKAEER-----LE- 268 (496)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~- 268 (496)
..+...+...|...|+++.|+.+++..... .|. .|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999988776611 111 133333 334677888999999999999988543 11
Q ss_pred cCc-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC------CCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 010994 269 QKD-GIGYNFLISLYASLGNKSEVLRLWDLEKTACK------RYIN-RDYITMLEALMKLGEHEEAEKVLKEWELS---G 337 (496)
Q Consensus 269 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 337 (496)
.|. ..+++.|..+|.+.|++++|...++....... .+.. ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122 25678888889999999998888875544322 1222 33667777888899999999998876642 1
Q ss_pred CCCC----cccHHHHHHHHHhcCchhHHHHHHHHHHhcC----C--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994 338 NSYD----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKG----K--AT-TPNSWAVVAAGYFDAGKTERGFQCMKAALSV 406 (496)
Q Consensus 338 ~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 406 (496)
+.++ ..+++.|...|...|++++|.+++++++... - .+ ....++.+...|.+.++.++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3568889999999999999999999886531 1 11 2346788889999999999999999988774
Q ss_pred hhcCCC-CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994 407 YVEGKG-WKPDP-KVITSILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 407 ~~~~~~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
. ...| ..|+. .+|..|...|.+.|+++.|.++.+.+.
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 2222 23343 578889999999999999999888665
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=2e-08 Score=89.54 Aligned_cols=96 Identities=19% Similarity=0.070 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALM 318 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 318 (496)
.|..+...|...|+.++|...|++..+..+ .+...|+.+...+...|++++|...|+......+ .+...+..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 344444555555555555555555544332 3345555555555555555555555555544433 23344445555555
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 010994 319 KLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~ 336 (496)
..|++++|.+.++...+.
T Consensus 144 ~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=2.4e-08 Score=80.37 Aligned_cols=196 Identities=14% Similarity=0.039 Sum_probs=94.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 010994 243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE 322 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 322 (496)
|.-.|...|+...|..-+++..+..+ .+..+|..+...|.+.|..+.|.+.|+...+..+ .+....|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence 44455555555555555555544332 3334455555555555555555555555444433 334444444444555555
Q ss_pred HHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 010994 323 HEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMK 401 (496)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 401 (496)
+++|...|+.......-+ -..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.......|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555554431111 1233444444444555555555555555544333 33344445555555555555555555
Q ss_pred HHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994 402 AALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI 447 (496)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 447 (496)
.... +..++..+.-.-|+.-...|+-+.+.++=..+...+
T Consensus 198 ~~~~------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 198 RYQQ------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHh------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5443 223455544444444455555555554444444433
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.8e-08 Score=85.24 Aligned_cols=266 Identities=12% Similarity=-0.015 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 209 (496)
|+.....+..++...|+.++|...|+.....+.- +........-.+.+.|+.+....+...+.... +-....|..-..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 3444455555555555555555555544433110 11112222222334444444444444443321 111222222223
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 010994 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS 289 (496)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (496)
......++..|+.+-++.+ +.+. .+...|-.-...+...++.++|.-.|+..+...+ .+...|.-++.+|...|++.
T Consensus 309 ~l~~~K~~~rAL~~~eK~I-~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCI-DSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhHHHHHHHHHHHh-ccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 3333444555555554444 3332 2333333333444455555555555554433221 34445555555555555555
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchhHHHHHHH
Q 010994 290 EVLRLWDLEKTACKRYINRDYITML-EALM-KLGEHEEAEKVLKEWELSGNSYD-TRIPNAVIIGYCNNGLVQNAEAILE 366 (496)
Q Consensus 290 ~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 366 (496)
+|.-.-+.....-+ .+..+...+. ..|. ...--++|..+++...+. .|+ ....+.+...+...|..+.++.+++
T Consensus 386 EA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 55444443333222 2333333221 1111 111224444454444433 222 1223344444455555555555555
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 367 DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 367 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+.... .||....+.+.+.+...+.+++|++.|..++.
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 54431 24555555555555555555555555555544
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=7.2e-09 Score=96.48 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=178.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----c-ccCccch-HHHHHHHHHhcCCHHHHHHHHHHHHhhcC-
Q 010994 232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER-----L-EQKDGIG-YNFLISLYASLGNKSEVLRLWDLEKTACK- 303 (496)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 303 (496)
+.+.-..+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++.+|..+|+.+.....
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33334556666999999999999999999987654 1 1233332 34477789999999999999997765422
Q ss_pred ---CCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCc-ccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 304 ---RYIN---RDYITMLEALMKLGEHEEAEKVLKEWELS-----G-NSYDT-RIPNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 304 ---~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
..++ .+++.|..+|.+.|++++|...++...+. | ..|.+ ..++.+...++..+++++|..+++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2222 45777888999999999999988877642 1 12222 2356677788899999999999987653
Q ss_pred c---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994 371 K---GKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW-KP-DPKVITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 371 ~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
. -+.++ ..+++.|...|...|++++|.+++++++....+..|- .+ ....++.+...|.+.+++.+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 2 12222 3589999999999999999999999999843322231 22 24578888889999999999999988
Q ss_pred HHHh---c----CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994 442 ALRT---V----IPMNRQMYHAFIKANIRNG--KGVDELLDSMK 476 (496)
Q Consensus 442 ~~~~---~----~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 476 (496)
+... . .|....+|..|...|.+.| +.|.++.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6544 1 2233468999999999999 78888776654
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=1.9e-07 Score=86.67 Aligned_cols=311 Identities=11% Similarity=-0.008 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh-hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHH--
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGI-ALST-LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRI-- 206 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-- 206 (496)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|...+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34455555555556666665555555433211 1111 112222334455667777777776666542 112223221
Q ss_pred -HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 010994 207 -CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASL 285 (496)
Q Consensus 207 -li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 285 (496)
........+..+.+.+.+... ....+........+...+...|++++|...+++..+..+ .+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 111111234444444444432 222223334444555666777777777777777766543 4455666677777777
Q ss_pred CCHHHHHHHHHHHHhhcCC-CCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccH-H--HHHHHHHhcCch
Q 010994 286 GNKSEVLRLWDLEKTACKR-YIN--RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD-TRIP-N--AVIIGYCNNGLV 358 (496)
Q Consensus 286 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~ 358 (496)
|++++|...++......+. ++. ..|..+...+...|++++|..++++.......+. .... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 7777777777765554331 111 2244566667777777777777777643321111 1100 1 222333334433
Q ss_pred hHHHHH--HHHH-HhcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcC--CCCC-CCHHHHHHHHHHHhccC
Q 010994 359 QNAEAI--LEDL-VEKGK-ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEG--KGWK-PDPKVITSILSKLGDEG 431 (496)
Q Consensus 359 ~~a~~~--~~~~-~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~-p~~~~~~~l~~~~~~~g 431 (496)
+.+.++ +... ..... ............++...|+.+.|...+..+....... .+.. ...........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333332 1111 11100 0011222245667777888888888888776521110 0000 01111222223456778
Q ss_pred CHHHHHHHHHHHHh
Q 010994 432 SVQDVEAFVAALRT 445 (496)
Q Consensus 432 ~~~~a~~~~~~~~~ 445 (496)
+.++|.+.+.....
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888876543
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1.7e-08 Score=90.11 Aligned_cols=89 Identities=18% Similarity=0.074 Sum_probs=47.4
Q ss_pred hhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 105 LDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
...+...|+.+.|...|++.....| +...|+.+...+...|++++|...|+...+.... +..+|..+..++...|+++
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 3444455555555555555555544 3555555555555555555555555555544211 3444555555555555555
Q ss_pred cHHHHHHHHHH
Q 010994 184 KVPDVLTEMKA 194 (496)
Q Consensus 184 ~a~~~~~~m~~ 194 (496)
+|.+.|+...+
T Consensus 150 eA~~~~~~al~ 160 (296)
T PRK11189 150 LAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=4.8e-08 Score=78.69 Aligned_cols=200 Identities=14% Similarity=0.023 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYG 212 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 212 (496)
+..-|.-.|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|++..+... -+..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 3455666777777777777777777776433 566677777777777777777777777776422 24455666666677
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 010994 213 ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL 292 (496)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 292 (496)
..|++++|.+.|++.........-..+|..+.-|..+.|+.+.|.+.|++..+..+ ....+.-.+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777664555544556676777777777777777777777766543 33455666667777777777777
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994 293 RLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (496)
.+++.....++ +...+.-..|+.--..|+.+.+.++=..+.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77776666555 66666666666667777777777666666554
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=9.2e-08 Score=81.86 Aligned_cols=390 Identities=11% Similarity=-0.003 Sum_probs=206.5
Q ss_pred HHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHH
Q 010994 70 RDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDK 149 (496)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 149 (496)
..+.+.|++++|+..|..+.+... .+......+.-...-.|.+.+|..+-...+. ++-.-..|.+...+.++-++
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k---~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPK---TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhCcHHH
Confidence 344566777777777777666441 2222222233333356667777666554433 22223334455555566555
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH-HHHHhhcCChHHHHHHHHHhh
Q 010994 150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC-INSYGARSDLEGMEIILREME 228 (496)
Q Consensus 150 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~ 228 (496)
-..+-+.+.+. ..---+|.........+++|+++|.+.... .|+-...|.- .-+|.+..-++-+.+++.--.
T Consensus 140 ~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 55544444331 122233444444455678888998888765 3444444443 346677777777777776665
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------------hcc------------cCc-----cchHHH
Q 010994 229 SQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEE--------------RLE------------QKD-----GIGYNF 277 (496)
Q Consensus 229 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------------~~~------------~~~-----~~~~~~ 277 (496)
. .++.+..+.|.......+.=+-..|..-.+.+.+ ++. -|. +.+.-.
T Consensus 213 ~--q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 213 R--QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred H--hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 2 2323444455554444332111112221222111 110 000 112233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh-------cCCHHHHHHHHHHHHhcCCCCCc-ccHHHHH
Q 010994 278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK-------LGEHEEAEKVLKEWELSGNSYDT-RIPNAVI 349 (496)
Q Consensus 278 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 349 (496)
++--|.+.+++.+|..+.+... + .++.-|..-.-.... ...+.-|.+.|+..-.++..-|. ..-.++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~---P-ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLD---P-TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred heeeecccccHHHHHHHHhhcC---C-CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 4445678888888888776432 1 111222211111222 23466677777776666554333 2334556
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH-HHHHHHh
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT-SILSKLG 428 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~ 428 (496)
..+.-..++|+.+..++.+...-.. |...--.+.++++..|++.+|.++|-+... ..++ |..+|. .+.++|.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~-----~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISG-----PEIK-NKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcC-----hhhh-hhHHHHHHHHHHHH
Confidence 6666667788888888877765333 333333477888888999999888877643 2333 344444 4556778
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHH
Q 010994 429 DEGSVQDVEAFVAALRTVIPMNRQM-YHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKE 488 (496)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~ 488 (496)
+.++.+.|..++-++.. +.+..+ ...+...|.+.+ =-|-..|+.+.. ..|+++.|.
T Consensus 440 ~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred hcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 88888888877654432 333333 344445566666 234444555444 446665553
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=2e-07 Score=87.95 Aligned_cols=129 Identities=11% Similarity=0.049 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|......++. ++.+..++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4556677778888888888887776653 345666777777788888888888888888876554 56678888888888
Q ss_pred cCChHHHHH--HHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 390 AGKTERGFQ--CMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 390 ~~~~~~a~~--~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
.|+..-|.. ++.++++ .+.. +...|..+...+.+.|+.++|.+.|......
T Consensus 731 ~G~~~la~~~~~L~dalr-----~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALR-----LDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHh-----hCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 888777777 8888887 4444 4667888888888888888888888866554
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=2e-06 Score=79.82 Aligned_cols=356 Identities=14% Similarity=0.106 Sum_probs=184.3
Q ss_pred HHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHH
Q 010994 71 DLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDK 149 (496)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 149 (496)
.+...|+-++|.+..+...+... -++--++...-++....++++|+++|..+...+| |..+|.-+.-.-++.|+++.
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 34455555666666555555431 2222233333334445556666666666665555 35555555555555566665
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCChhhHHHHH------HHHhhcCChHHHHH
Q 010994 150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN-IFPDNFSYRICI------NSYGARSDLEGMEI 222 (496)
Q Consensus 150 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li------~~~~~~~~~~~a~~ 222 (496)
.........+.. +-....|..++.++.-.|++..|..+.+...+.. -.|+...|.... ....+.|..+.|.+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 555555554431 1134445555555556666666666666655543 133433332221 22334455555555
Q ss_pred HHHHhhcCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHH-HHHHhcCCHHHHH-HHHH---
Q 010994 223 ILREMESQPHIVLDWST-YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLI-SLYASLGNKSEVL-RLWD--- 296 (496)
Q Consensus 223 ~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~--- 296 (496)
.+..-. ..+ .|-.. -..-...+.+.+++++|..++..+...+ ||...|.... .++.+..+.-+++ .+|.
T Consensus 207 ~L~~~e--~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 207 HLLDNE--KQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHhhh--hHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 544442 112 12111 1233445555566666666666655543 3333333322 2222222222222 3333
Q ss_pred -------------------------------HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh----cC----
Q 010994 297 -------------------------------LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL----SG---- 337 (496)
Q Consensus 297 -------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---- 337 (496)
.+.+.|. +.++..+...|-.....+-..++.-.+.. .|
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~---p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV---PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC---CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 2222222 22333333333322222211222222211 11
Q ss_pred ------CCCCcccH--HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 010994 338 ------NSYDTRIP--NAVIIGYCNNGLVQNAEAILEDLVEKGKATTP-NSWAVVAAGYFDAGKTERGFQCMKAALSVYV 408 (496)
Q Consensus 338 ------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (496)
-+|....| --++..+-+.|+++.|..+++..+++ .|+. ..|..-...+...|+++.|..+++++.+
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--- 433 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--- 433 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh---
Confidence 13343333 45667788899999999999999885 3443 3565666889999999999999999987
Q ss_pred cCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 409 EGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 409 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
--.||...-.--.....+.++.++|.++......
T Consensus 434 ---lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 434 ---LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred ---ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 2345544444556667788999999999887765
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=3.5e-07 Score=84.84 Aligned_cols=195 Identities=9% Similarity=-0.044 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhh-hhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHA-VQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCY 141 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~ 141 (496)
.|..+...+...|+++.+.+.+....+......++.... .....+...|++++|...++++.+..|+ ...+.. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444555555666666655555555432111111111 1122333455555555555555544442 222221 1111
Q ss_pred H----hcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 142 V----RQRQTDKALSHFRKMKEMGIALS-TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 142 ~----~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
. ..+..+.+.+.++. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 1 12233333333322 0111111 2222333444455555555555555555432 1123344444555555555
Q ss_pred hHHHHHHHHHhhcCCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 217 LEGMEIILREMESQPHI-VLDW--STYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 217 ~~~a~~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
+++|...+++.. .... .++. ..|..+...+...|++++|..++++.
T Consensus 164 ~~eA~~~l~~~l-~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 164 FKEGIAFMESWR-DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhh-hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555444 2111 1111 12333444555555555555555554
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.4e-06 Score=80.00 Aligned_cols=408 Identities=12% Similarity=0.068 Sum_probs=238.9
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhc
Q 010994 65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQ 144 (496)
Q Consensus 65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 144 (496)
+-+=+..+...+++++|++....+...+ +-+++.+.--+-.+.+.++++.|+.+.+.-.....+..-+.--.-+..+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 3445666778899999999999999876 34556666667888899999999977665443221111111223445678
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCChHHHHHH
Q 010994 145 RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP-DNFSYRICINSYGARSDLEGMEII 223 (496)
Q Consensus 145 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~ 223 (496)
+..++|+..++...+. |..+...-.+.+.+.|++++|+++|+.+.+++.+- +...-..++.+-. .-.+. +
T Consensus 93 nk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-L 163 (652)
T ss_pred ccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-H
Confidence 9999999999833322 44577777888999999999999999998875431 1111122222111 11111 1
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc----cCccc----------hHHHHHHHHHhcCCHH
Q 010994 224 LREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE----QKDGI----------GYNFLISLYASLGNKS 289 (496)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~----------~~~~l~~~~~~~~~~~ 289 (496)
.+... . ....+...+......+...|++.+|+++++.....+. .-|.. .-.-+...+...|+.+
T Consensus 164 ~q~v~-~-v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 164 LQSVP-E-VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHhcc-C-CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 22221 1 1111222233345677889999999999998733221 11111 1223445677899999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHH---HHHHHhcCCHHH--------------HHHHHHHHH------------------
Q 010994 290 EVLRLWDLEKTACKRYINRDYITM---LEALMKLGEHEE--------------AEKVLKEWE------------------ 334 (496)
Q Consensus 290 ~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~--------------a~~~~~~~~------------------ 334 (496)
+|..+|.......+ +|....... +-+...-.++-. +......+.
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887765 443221111 111111111000 000000000
Q ss_pred ----------hc--CCCCCcccHHHHHHHHH--hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 010994 335 ----------LS--GNSYDTRIPNAVIIGYC--NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCM 400 (496)
Q Consensus 335 ----------~~--~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 400 (496)
.. +..|. ..+.+++.... +.....+|..++...-+....-.....-.++......|+++.|++++
T Consensus 321 nk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 00 01122 22333333322 22246677777777776654434556777788889999999999999
Q ss_pred H--------HHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCHH----HHHHHHHHHHhCC
Q 010994 401 K--------AALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV---IPMNRQ----MYHAFIKANIRNG 465 (496)
Q Consensus 401 ~--------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~----~~~~l~~~~~~~g 465 (496)
. ...+ .+..| .+...++..+.+.++-+.|..++...... ..+... ++.-+...-.+.|
T Consensus 400 ~~~~~~~~ss~~~-----~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 400 SLFLESWKSSILE-----AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHhhhhhhhhhh-----hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 8 4433 34444 45566777778888888888887765542 122223 3444444445567
Q ss_pred --CcHHHHHHHHHhCCCCCChhHHHHHHhhhc
Q 010994 466 --KGVDELLDSMKADGIDEDEETKEILVCTME 495 (496)
Q Consensus 466 --~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 495 (496)
++|..+++++.+.. .+|..+..-++.+++
T Consensus 473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYA 503 (652)
T ss_pred chHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 79999999998853 466666666665554
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=1.2e-06 Score=74.88 Aligned_cols=314 Identities=13% Similarity=0.052 Sum_probs=193.8
Q ss_pred CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhh---hhHHHhhcCHHHHHHHHHhchhcCCCHH-HHH
Q 010994 60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQ---LDLIGRVHGFLSAESYFSNLKDDEKTYQ-TYG 135 (496)
Q Consensus 60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 135 (496)
.++.-.--+-..+...|++..|+.-|...++.+ |+.+..+ ...|...|+-..|+.-|+++.+..||-. .--
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 344445567777888889999999998888754 5555554 5677788888888888888888888733 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS 215 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 215 (496)
--...+.+.|.+++|..=|+.+.+... +..+- ..+..+. ...+++ ......+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~--s~~~~---~eaqskl-------~~~~e~---------~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEP--SNGLV---LEAQSKL-------ALIQEH---------WVLVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCC--Ccchh---HHHHHHH-------HhHHHH---------HHHHHHHHHHhcCC
Confidence 344667788999999888888877632 21110 0111000 001111 11223334455566
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994 216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW 295 (496)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 295 (496)
+...|+.....+. +..+ -|...|..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.++...
T Consensus 170 D~~~ai~~i~~ll-Ei~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 170 DCQNAIEMITHLL-EIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred chhhHHHHHHHHH-hcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6667777666666 4443 566666666677777777777766665544322 244455555566666667777666666
Q ss_pred HHHHhhcCCCCchh----HHHH---------HHHHHhcCCHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCchh
Q 010994 296 DLEKTACKRYINRD----YITM---------LEALMKLGEHEEAEKVLKEWELSGNSYDT---RIPNAVIIGYCNNGLVQ 359 (496)
Q Consensus 296 ~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 359 (496)
++.....+ +... |..+ +......+++.++....+...+..+.... ..+..+-.++...|++.
T Consensus 247 RECLKldp--dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 247 RECLKLDP--DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHccCc--chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 65555432 2211 1111 12234456677777777777665433122 23345556666778888
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 360 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+|+....+.++.... |+.++---..+|.-...++.|+.-|+.+.+
T Consensus 325 eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 325 EAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 888888888875433 577777778888888888888888888876
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=8.9e-07 Score=74.20 Aligned_cols=299 Identities=10% Similarity=0.024 Sum_probs=197.4
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA 136 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 136 (496)
|.......+.+.+..+.+..++.+|++++..-.+..+ .+......+...|....++..|-..++++....|...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444455577888889999999999999998888762 34455666677778999999999999999988886554432
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH--HHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994 137 -LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC--LYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA 213 (496)
Q Consensus 137 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 213 (496)
-...+.+.+.+..|+++...|... |+...-..-+. .....+++..+..+.++....| +..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 346778899999999999888764 23222222222 2345688999999988875432 44455555556678
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc-------------c-------
Q 010994 214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG-------------I------- 273 (496)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------------~------- 273 (496)
.|++++|.+-|+....-.|.. ....||..+ +..+.|+.+.|++...++.++|++..+ .
T Consensus 157 egqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 999999999999887456664 456677554 455678999999999999887764211 1
Q ss_pred --------hHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 010994 274 --------GYNFLISLYASLGNKSEVLRLWDLEKTACK-RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRI 344 (496)
Q Consensus 274 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (496)
.+|.-...+.+.|+++.|.+.+-.|-.... ..|+.|...+.-. ...+++....+-+.-+....+- ...|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHH
Confidence 122222234566777777776665533221 3455555444222 1234455555555555555432 3456
Q ss_pred HHHHHHHHHhcCchhHHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILED 367 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~ 367 (496)
|..++-.||++.-++.|-.++.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 67777778888777777776654
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=5.9e-09 Score=91.49 Aligned_cols=254 Identities=18% Similarity=0.155 Sum_probs=138.3
Q ss_pred HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 010994 174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI 253 (496)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 253 (496)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+ +.++. ... .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~-~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIK-KSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS--TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhc-cCC-ChhHHHHHHHHHHHhCccch
Confidence 34445677776665444 22221112233445566777777776643 34443 222 45555554444444333444
Q ss_pred HHHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010994 254 DKASDVLKKAEERLEQ-KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKE 332 (496)
Q Consensus 254 ~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 332 (496)
+.+..-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444433222211 12222222334455667788777776521 3445666677777788888888888888
Q ss_pred HHhcCCCCCcccHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 010994 333 WELSGNSYDTRIPNAVIIGYCN----NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYV 408 (496)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (496)
|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+.+.+++.
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--- 229 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--- 229 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---
Confidence 77652 22333444444432 33577788888887664 445777777777788888888888888777754
Q ss_pred cCCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHhcCCC
Q 010994 409 EGKGWKPDPKVITSILSKLGDEGSV-QDVEAFVAALRTVIPM 449 (496)
Q Consensus 409 ~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~ 449 (496)
.-+-+..++..++.+....|+. +.+.+++.+++...|.
T Consensus 230 ---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 230 ---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp ---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred ---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 2223445666666666666766 5566777777665443
No 89
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.05 E-value=1.2e-05 Score=73.21 Aligned_cols=382 Identities=13% Similarity=0.139 Sum_probs=233.1
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA 136 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 136 (496)
..+-|..+|+.||+-+..+ .++++.+.++++... +|.+|..+...++.-....+++..+.+|.+.....-+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 5678899999999987655 899999999999875 5678888888888888999999999999998876667778877
Q ss_pred HHHHHHhc-CCHHH----HHHHHHHH-HHCCCCC-ChhHHHHHHHH---------HHhcCCCCcHHHHHHHHHHCCCCCC
Q 010994 137 LLNCYVRQ-RQTDK----ALSHFRKM-KEMGIAL-STLTYNDIMCL---------YSKTGQYEKVPDVLTEMKAKNIFPD 200 (496)
Q Consensus 137 li~~~~~~-g~~~~----A~~~~~~m-~~~g~~p-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~~~~~p~ 200 (496)
.++.--+. |+... ..+.|+-. .+.|+.+ +...|+..+.. +..+.+.+.+.++|+++....+..=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 77654433 22222 22333332 3344332 23335544443 3333455566677777665322110
Q ss_pred hh------hHHHHHHHHh-------hcCChHHHHHHHHHhh-----------------------------------cCCC
Q 010994 201 NF------SYRICINSYG-------ARSDLEGMEIILREME-----------------------------------SQPH 232 (496)
Q Consensus 201 ~~------~~~~li~~~~-------~~~~~~~a~~~~~~~~-----------------------------------~~~~ 232 (496)
.. .|-.-|+... +...+-.|.++++++. ...+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 11 1111111100 1112223333333322 0000
Q ss_pred CC-CC--------HHHHHHHH---------------------HHHHhcCC-------hHHHHHHHHHHHHhcccCccchH
Q 010994 233 IV-LD--------WSTYASAA---------------------HFYIKANL-------IDKASDVLKKAEERLEQKDGIGY 275 (496)
Q Consensus 233 ~~-~~--------~~~~~~li---------------------~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~~~ 275 (496)
.. .+ ..+|+..+ +.+...|+ .+++.+++++..+.-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 00111111 11112222 34455555554443333333344
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHH
Q 010994 276 NFLISLYASL---GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY-DTRIPNAVIIG 351 (496)
Q Consensus 276 ~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 351 (496)
..+...--.. ...+....+++............+|...++...+..-+..|..+|.++.+.+..+ ++.++++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4333221111 1355566666666655554556778888888888889999999999999887766 77788888887
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHhc
Q 010994 352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP--KVITSILSKLGD 429 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~ 429 (496)
|| .++.+-|.++|+--..+-. -++.--...+.-+...++-..+..+|++.+. .++.|+. ..|..++.-=..
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~-d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~-----s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFG-DSPEYVLKYLDFLSHLNDDNNARALFERVLT-----SVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHhCcchhHHHHHHHHHh-----ccCChhhhHHHHHHHHHHHHh
Confidence 66 5788899999987555421 1344456677888888999999999999988 5566654 689999988888
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 010994 430 EGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~ 448 (496)
-|+...+.++-++....++
T Consensus 485 vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cccHHHHHHHHHHHHHhcc
Confidence 9999999988887766544
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=2e-06 Score=90.37 Aligned_cols=339 Identities=8% Similarity=-0.036 Sum_probs=214.5
Q ss_pred HHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCh--hHHHHHHHHH
Q 010994 107 LIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGI------ALST--LTYNDIMCLY 176 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~--~~~~~l~~~~ 176 (496)
.....|+++.+..++..++... .+..........+...|++++|...++.....-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677888888887764321 1222333445556678999999999987754310 1111 1222334456
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHhhc---CCCC-CCCHHHHHHHHHHHH
Q 010994 177 SKTGQYEKVPDVLTEMKAKNIFPDN----FSYRICINSYGARSDLEGMEIILREMES---QPHI-VLDWSTYASAAHFYI 248 (496)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~li~~~~ 248 (496)
...|++++|...+++....-...+. ...+.+...+...|+++.|...+++... ..+. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999988764111121 2345566677889999999999887751 1111 111234455677888
Q ss_pred hcCChHHHHHHHHHHHHh----ccc--C-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--C--CchhHHHHHHHH
Q 010994 249 KANLIDKASDVLKKAEER----LEQ--K-DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR--Y--INRDYITMLEAL 317 (496)
Q Consensus 249 ~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~ 317 (496)
..|++++|...+++.... +.. + ....+..+...+...|++++|...++........ + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999999887543 211 1 1223445566777889999999998866543221 1 123344566677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC-cccH-----HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHH
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYD-TRIP-----NAVIIGYCNNGLVQNAEAILEDLVEKGKATTP---NSWAVVAAGYF 388 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~ 388 (496)
...|+.+.|...+........... ...+ ...+..+...|+.+.|..++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 889999999999988764311111 1111 11224455688999999998776542211111 12456777888
Q ss_pred hcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 389 DAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
..|+.++|...++++.... ...|..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~-~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENA-RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988732 12233332 245666777888999999999999977664
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.8e-06 Score=75.72 Aligned_cols=210 Identities=14% Similarity=0.077 Sum_probs=121.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchh-------HHHHH
Q 010994 242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD-------YITML 314 (496)
Q Consensus 242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~ 314 (496)
.+.+...+..+++.|..-+....... .+..-++....+|...|.+.++........+.+. ..... +..+.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhh
Confidence 45555555566666666665554432 3333344444555555555555444443333322 11111 12223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccc-------------------------HHHHHHHHHhcCchhHHHHHHHHHH
Q 010994 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRI-------------------------PNAVIIGYCNNGLVQNAEAILEDLV 369 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (496)
.+|.+.++++.|...|.+.......|+... ...-...+.+.|++..|+..|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344445555556555555443222221110 1112345667788899999998888
Q ss_pred hcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 370 EKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 370 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
.+++. |...|..-..+|.+.|.+..|+.-.+..++ ..|+ ...|..=..++....+++.|.+.|.+..+..|
T Consensus 386 kr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 386 KRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIE-------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred hcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 88755 788888888888999999888888888876 3444 34555555566666788888888887777555
Q ss_pred CCHHHHHHHHHHHH
Q 010994 449 MNRQMYHAFIKANI 462 (496)
Q Consensus 449 ~~~~~~~~l~~~~~ 462 (496)
.+...-..+.++..
T Consensus 458 ~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555444444444
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=1.9e-08 Score=88.37 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=86.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----c
Q 010994 245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK----L 320 (496)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 320 (496)
..+...|++++|+++++. + .+.......+..|.+.++++.|.+.++.|.+. .+..+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHhCc
Confidence 344455666666666654 1 23344455566666666666666666665543 223344444444322 2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh-HHHHHH
Q 010994 321 GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT-ERGFQC 399 (496)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~ 399 (496)
+.+..|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.. |+.+...++......|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577777777776554 3456666777777777777777777777777665544 566666677776776766 455566
Q ss_pred HHHHHH
Q 010994 400 MKAALS 405 (496)
Q Consensus 400 ~~~~~~ 405 (496)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 666554
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=9.4e-08 Score=87.22 Aligned_cols=223 Identities=16% Similarity=0.097 Sum_probs=126.2
Q ss_pred HHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcH
Q 010994 107 LIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV 185 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 185 (496)
.+.+.|++.+|.-.|+.....+| +...|-.|.......++-..|+..+.+..+.... |....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 34456667777777776666666 4666777777777777767777777666665332 555666666666666666666
Q ss_pred HHHHHHHHHCCCC--------CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010994 186 PDVLTEMKAKNIF--------PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKAS 257 (496)
Q Consensus 186 ~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 257 (496)
+..++..+....+ ++..+-.. ..+.....+....++|-++....+..+|..++..|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 6666666543211 00000000 1112222333444555444434444455666666666666666666666
Q ss_pred HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 258 DVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWE 334 (496)
Q Consensus 258 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (496)
+.|+......+ .|...||.+.-.++...+.++|+..|.+.++..+ .-++....|.-.|...|.+++|.+.|-...
T Consensus 451 Dcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666655433 4556666666666666666666666666665544 333444445556666666666666554443
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.4e-06 Score=74.83 Aligned_cols=200 Identities=10% Similarity=0.030 Sum_probs=128.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccCcc-----chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-hhHHHHHH
Q 010994 242 SAAHFYIKANLIDKASDVLKKAEERLEQKDG-----IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN-RDYITMLE 315 (496)
Q Consensus 242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 315 (496)
.|+-.|.+.+++.+|..+.+++... .|-. +++..+.+-........-|.+.|...-.+...-|. ..-.++.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 3666788999999999988874221 1111 12222222222333455677777744333332222 34556677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHH-HHHHHHhcCChH
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV-VAAGYFDAGKTE 394 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~ 394 (496)
++.-..++++..-+++.+..--...|...+ .+.++++..|++.+|.++|-++....++ |..+|-+ +..+|.+.++++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 777778889999888888765444344444 4788899999999999999888766666 5666654 556788899999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994 395 RGFQCMKAALSVYVEGKGWKPDPKV-ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY 454 (496)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 454 (496)
.|+.++-++ .-+.+..+ ...+.+-|.+++.+--|-+.|+.+... .|++.-|
T Consensus 446 lAW~~~lk~--------~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l-DP~pEnW 497 (557)
T KOG3785|consen 446 LAWDMMLKT--------NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL-DPTPENW 497 (557)
T ss_pred HHHHHHHhc--------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc-CCCcccc
Confidence 998877664 22333333 334456788888888888888877663 4555444
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=9.6e-06 Score=69.56 Aligned_cols=300 Identities=14% Similarity=0.085 Sum_probs=196.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH---HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH-HHHHHH
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI---MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR-ICINSY 211 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~ 211 (496)
-+...+...|++..|+..|....+. |+..|.++ ...|...|+..-|+.=+.+..+ .+||-..-. .-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 3445555556666666666655554 33333333 2345555665555555555554 245422111 112345
Q ss_pred hhcCChHHHHHHHHHhhcCCCCC--CCHHH------------HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHH
Q 010994 212 GARSDLEGMEIILREMESQPHIV--LDWST------------YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNF 277 (496)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 277 (496)
.+.|.++.|..-|+.+. +.+.. ....+ ....+..+...|+...|+.....+.+.. +.|...|..
T Consensus 117 lK~Gele~A~~DF~~vl-~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVL-QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhcccHHHHHHHHHHHH-hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 56666666666666665 33221 01111 1223456677899999999999998854 488889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH----HHH-----
Q 010994 278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP----NAV----- 348 (496)
Q Consensus 278 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l----- 348 (496)
-..+|...|.+..|+.-++....... .+..++.-+-..+...|+.+.++...++..+. .||...+ ..+
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence 99999999999999988885554443 66677777888889999999999999888875 4554322 111
Q ss_pred ----HHHHHhcCchhHHHHHHHHHHhcCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHH
Q 010994 349 ----IIGYCNNGLVQNAEAILEDLVEKGKATTPN---SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVI 420 (496)
Q Consensus 349 ----~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~ 420 (496)
+....+.+++.++++-.+...+..+.-... .+..+-.++...|++.+|++.-.+++. +.|+ ..++
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~-------~d~~dv~~l 344 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD-------IDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-------cCchHHHHH
Confidence 122345677888888888777765442233 344555677788899999999999986 6665 7788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994 421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM 453 (496)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 453 (496)
.--..+|.-...++.|..-|+...+..+.+...
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 888889988889999999888877755554433
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.3e-06 Score=75.48 Aligned_cols=399 Identities=7% Similarity=-0.064 Sum_probs=230.3
Q ss_pred HHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHH
Q 010994 70 RDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTD 148 (496)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 148 (496)
.+.+..|+++.|+..|-+.+...+ .+.-.+......+...|++++|.+--.+..+..|+ ...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 455678899999999988887652 23444455577888889999988887777777786 778888888888889999
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC---cHHHHHHHHHHCC---CCCChhhHHHHHHHHhhcC-------
Q 010994 149 KALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE---KVPDVLTEMKAKN---IFPDNFSYRICINSYGARS------- 215 (496)
Q Consensus 149 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~------- 215 (496)
+|+.-|.+=.+... -|...++-+..++....... .--.++..+.... ......+|..++...-+..
T Consensus 88 eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99999988776632 25666777777662111000 0001111111100 0001112222222221110
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCChH----HHHHHHHHHHH-hcccCccchHHHHHHHHHhcCCHH
Q 010994 216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIK-ANLID----KASDVLKKAEE-RLEQKDGIGYNFLISLYASLGNKS 289 (496)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~----~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~ 289 (496)
+.+...+..-.+. ..+.. .+...-..... ...+. .......++.+ .....-..-...+..+..+..+++
T Consensus 167 ~d~r~m~a~~~l~-~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 167 NDPRLMKADGQLK-GVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred ccHHHHHHHHHHh-cCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0111111111110 00000 00000000000 00000 00000000000 000011133567788888899999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH-------HHHHHHHhcCchhHHH
Q 010994 290 EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN-------AVIIGYCNNGLVQNAE 362 (496)
Q Consensus 290 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~ 362 (496)
.+++-+....... .+..-++....+|...|.+..+........+.|-. ...-|+ .+..+|.+.++++.|+
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999998777665 45555677778888888888888877777766532 112222 2334666778899999
Q ss_pred HHHHHHHhcCCCCCHhHHH-------------------------HHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994 363 AILEDLVEKGKATTPNSWA-------------------------VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP 417 (496)
Q Consensus 363 ~~~~~~~~~~~~p~~~~~~-------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~ 417 (496)
..|.+.......|+..+=. .-...+.+.|++..|+..|.+++. ..+-|.
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------r~P~Da 392 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK------RDPEDA 392 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh------cCCchh
Confidence 9998877654444433211 113567889999999999999997 334466
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHH
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETK 487 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~ 487 (496)
..|..-.-+|.+.|.+..|..-.+...+..|+.+..|.-=..++.... +.|++.|++..+. .|+..-+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~ 462 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEA 462 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHH
Confidence 788888889999999999999888777766665555544443333333 6788888877663 3555443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=6e-06 Score=86.88 Aligned_cols=335 Identities=10% Similarity=-0.052 Sum_probs=207.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC--C----CCCh--hhHHHHHHH
Q 010994 139 NCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN--I----FPDN--FSYRICINS 210 (496)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~----~p~~--~~~~~li~~ 210 (496)
......|+++.+...++.+.......+..........+...|+++++..++......- . .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445567777777777665221111233333445556677899999999998875531 1 1111 112223345
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhccc---C--ccchHHHHHHH
Q 010994 211 YGARSDLEGMEIILREMESQPHIVLDW----STYASAAHFYIKANLIDKASDVLKKAEERLEQ---K--DGIGYNFLISL 281 (496)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~l~~~ 281 (496)
+...|+++.|...+++.. ......+. ...+.+...+...|++++|...+++....... + ...++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELAL-AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHH-hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 667899999999998876 32111221 23455667788899999999999887643211 1 12345566778
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCC---CC----chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC--CcccHHHHHH
Q 010994 282 YASLGNKSEVLRLWDLEKTACKR---YI----NRDYITMLEALMKLGEHEEAEKVLKEWELSGN--SY--DTRIPNAVII 350 (496)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~ 350 (496)
+...|++++|...++........ ++ ...+..+...+...|++++|...+.+...... .+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998865543211 11 12344555667778999999999888765311 11 1233444566
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCC-CHhHH-----HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH---HHHH
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKAT-TPNSW-----AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP---KVIT 421 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~ 421 (496)
.+...|+.+.|...+.+........ ....+ ...+..+...|+.+.|.+++..... ....... ..+.
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~~~~~~~~ 695 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-----PEFANNHFLQGQWR 695 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-----CCCccchhHHHHHH
Confidence 7778999999999998875421110 11111 1122445568899999988777543 1111111 1234
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhc-----CCC-CHHHHHHHHHHHHhCC--CcHHHHHHHHHhCC
Q 010994 422 SILSKLGDEGSVQDVEAFVAALRTV-----IPM-NRQMYHAFIKANIRNG--KGVDELLDSMKADG 479 (496)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g 479 (496)
.+..++...|+.++|...++..... .+. ...++..+..++.+.| ++|...+.+..+..
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5667788899999999999876552 111 2346777888888999 68888888877543
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.92 E-value=1.6e-06 Score=84.26 Aligned_cols=374 Identities=9% Similarity=-0.039 Sum_probs=233.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010994 77 RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFR 155 (496)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 155 (496)
+...|+..|-...+..+ .-...+..+...|+...+...|.+.|+.+.+.++ +...+....+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36667777766666542 3345788888999999999999999999999887 68889999999999999999999844
Q ss_pred HHHHCCCC-CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC
Q 010994 156 KMKEMGIA-LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIV 234 (496)
Q Consensus 156 ~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 234 (496)
..-+.... .-...|....-.|.+.++..++..-|+...+..+ -|...|..+..+|.+.|++..|.++|.+.. ..++
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs-~LrP- 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKAS-LLRP- 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhH-hcCc-
Confidence 43332110 0122344445567788899999999998887543 367889999999999999999999998886 5443
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc------cCccchHHHHHHHHHhcCCHHHHHHHHHHHHh-------h
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLE------QKDGIGYNFLISLYASLGNKSEVLRLWDLEKT-------A 301 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~ 301 (496)
.++..--.....-+..|.+.+|...+..+..... .--..++-.+...+...|-...+.++++.... .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2222222333455667888888888887644211 11122333333333333333333333332221 1
Q ss_pred cCCCCchhHHHHHHHHH-----------------------hcCCH---H---HHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994 302 CKRYINRDYITMLEALM-----------------------KLGEH---E---EAEKVLKEWELSGNSYDTRIPNAVIIGY 352 (496)
Q Consensus 302 ~~~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (496)
....+...|..+..+|. ..+.. + -+.+.+-.-.+ ...+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 11112222222222211 11111 1 01111111001 122344454454444
Q ss_pred Hh--------cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 010994 353 CN--------NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL 424 (496)
Q Consensus 353 ~~--------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 424 (496)
.+ ..+...|...+.+.++..-. +..+|+.|... ...|++.-|...|-+.+. ..+-+..+|..+.
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~------sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRF------SEPTCHCQWLNLG 857 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhh------ccccchhheeccc
Confidence 43 12334677888877765333 77788887766 666888889888888775 4445667888888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 425 SKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
-.+....+++.|...|.+.....|.+...|-.........|
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 88899999999999999999888888887755544444444
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=4.8e-07 Score=82.76 Aligned_cols=222 Identities=10% Similarity=0.003 Sum_probs=134.9
Q ss_pred HHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHH
Q 010994 176 YSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK 255 (496)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 255 (496)
+.+.|+..+|.-.|+..++.+. -+...|..|......+++-..|+..+++.. +.++ -+..+.-.|...|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl-~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCL-ELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 4566777777777777766532 255667777777777777777777777776 5554 566666677777777777777
Q ss_pred HHHHHHHHHHhcccC--------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHhcCCHHHH
Q 010994 256 ASDVLKKAEERLEQK--------DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-RYINRDYITMLEALMKLGEHEEA 326 (496)
Q Consensus 256 a~~~~~~m~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 326 (496)
|.+.++.-+...++. +...-.. ..+..........++|-.+....+ .+|...+..|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777777664433210 0000000 011111122333444433333332 46666677777777777777777
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 327 EKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTP-NSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+.|+.+.... +-|..+||.|...++...+.++|+..|++.++. .|+. .+...|..+|...|.+++|...|-.++.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 77777776653 225667777777777777777777777777764 3332 3455566677777777777777777666
No 100
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=3.2e-06 Score=75.48 Aligned_cols=200 Identities=10% Similarity=0.007 Sum_probs=96.4
Q ss_pred CHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC--CcHHHH
Q 010994 113 GFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQR-QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY--EKVPDV 188 (496)
Q Consensus 113 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~--~~a~~~ 188 (496)
+.+.|+...+.+....| +..+|+..-.++.+.| ++++++..++++.+.+.+ +..+|+.....+.+.|+. +++..+
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHH
Confidence 34444444444444444 3444544444444444 456666666666554333 444455444444444432 345555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc---CC----hHHHHHHHH
Q 010994 189 LTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA---NL----IDKASDVLK 261 (496)
Q Consensus 189 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~~ 261 (496)
++++.+... -|..+|+...-++...|+++++++.++++. +.++ -+..+|+.....+.+. |. .+++.....
T Consensus 131 ~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I-~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLL-EEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 555555432 244555555555555566666666666665 4443 4444454444333332 11 234555554
Q ss_pred HHHHhcccCccchHHHHHHHHHhc----CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010994 262 KAEERLEQKDGIGYNFLISLYASL----GNKSEVLRLWDLEKTACKRYINRDYITMLEALM 318 (496)
Q Consensus 262 ~m~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 318 (496)
+++...+ -|...|+-+...+... ++..+|.+.+.......+ .+......++..|+
T Consensus 208 ~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 208 DAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred HHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence 5544333 5556666666666552 233445555554433222 33344444555544
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=5e-07 Score=90.57 Aligned_cols=205 Identities=15% Similarity=0.157 Sum_probs=152.2
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR----YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP 345 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 345 (496)
.+...|-..|....+.++.++|.++.++....... --.-.|.++++.-...|.-+...++|+++.+. .....+|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 44567888888888888888888888877665431 11134666666666777778888888888775 2234567
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC---HHHHHH
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD---PKVITS 422 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~ 422 (496)
..|...|.+.+.+++|.++++.|.++-- -....|...+..+.++++-+.|..++.++++ .-|- .....-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~-------~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK-------SLPKQEHVEFISK 1605 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh-------hcchhhhHHHHHH
Confidence 7888888888888888888888886522 3667888888888888888888888888886 3333 234455
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCCh
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDE 484 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~ 484 (496)
.+..-.+.|+.+.+..+|+......|.....|+.+++.-.++| +.+.++|++....++.|-.
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 5556677888888888888887778888888888888888888 6777888888888777643
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.3e-05 Score=67.47 Aligned_cols=295 Identities=13% Similarity=0.080 Sum_probs=207.8
Q ss_pred CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHH-HH
Q 010994 96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYND-IM 173 (496)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-l~ 173 (496)
+....++..+..+.+..+++.|++++..-.+..| +......|..+|....++..|...++++-.. .|...-|.. -.
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 3444577778888999999999999999888877 7777888999999999999999999999775 455555543 24
Q ss_pred HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHH--HHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 010994 174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICI--NSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251 (496)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 251 (496)
+.+.+.+.+..|+.+...|... |+...-..-+ ......+|+..+..++++.. .. -+..+.+.......+.|
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-~e---n~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-SE---NEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhcc-CC---Cccchhccchheeeccc
Confidence 5667888999999999888653 2322211112 22345788888999988886 22 23444445666678999
Q ss_pred ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-------------CCch--------hH
Q 010994 252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR-------------YINR--------DY 310 (496)
Q Consensus 252 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~ 310 (496)
+.+.|.+-|+...+.+--.....|+..+ +..+.|+.+.|++...++...|.+ +|.. ..
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999999987765435566777655 455778999999999888776652 1211 12
Q ss_pred HHHHHH-------HHhcCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHH
Q 010994 311 ITMLEA-------LMKLGEHEEAEKVLKEWELS-GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV 382 (496)
Q Consensus 311 ~~l~~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 382 (496)
+.++.+ +.+.|+++.|.+.+-.|.-+ ....|+.|...+.-.- -.+++-...+-+.-+.+.++- ...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence 233333 45678899998888887633 2245666665543221 245565666666666666554 5678999
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 010994 383 VAAGYFDAGKTERGFQCMKA 402 (496)
Q Consensus 383 l~~~~~~~~~~~~a~~~~~~ 402 (496)
++-.||+..-++.|..++.+
T Consensus 316 lLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhh
Confidence 99999999999988887766
No 103
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=9.7e-06 Score=72.40 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=78.1
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH--HH
Q 010994 214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN-LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK--SE 290 (496)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 290 (496)
.++.++|+.+..++. ..++ -+..+|+....++...| ++++++..++++.+..+ .+..+|+.....+.+.|+. ++
T Consensus 50 ~e~serAL~lt~~aI-~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVI-RLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHH-HHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHH
Confidence 334444444444444 2222 22333333333333333 34455555554444332 3333344333333333331 33
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---Cc----hhHHHH
Q 010994 291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN---GL----VQNAEA 363 (496)
Q Consensus 291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~ 363 (496)
++.+++.+....+ -+...|+....++...|+++++.+.++++.+.++. |...|+.....+.+. |. .++++.
T Consensus 127 el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 4444444444333 33444444444444455555555555555544322 333443333333222 11 123444
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhc----CChHHHHHHHHHHH
Q 010994 364 ILEDLVEKGKATTPNSWAVVAAGYFDA----GKTERGFQCMKAAL 404 (496)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~ 404 (496)
...+++...+. |...|+.+...+... ++..+|.+.+.+..
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 44455554433 455555555555442 22344555555544
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=5.3e-07 Score=84.69 Aligned_cols=216 Identities=14% Similarity=0.051 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010994 168 TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFY 247 (496)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 247 (496)
.-..+...+...|-...|..+|++.. .|.-+|.+|+..|+.++|..+..+.. + -+|+...|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHHHhhhhc
Confidence 33456667777788888888887763 46677888888888888888887776 4 237777787787777
Q ss_pred HhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 010994 248 IKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAE 327 (496)
Q Consensus 248 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (496)
....-+++|.++.+..-.. +-..+.....+.++++++.+.|+......+ ....+|.....+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHH
Confidence 7777778888887764322 112222223346788888888886666555 55677888888888888888888
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 328 KVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+.|....... +.+...||.+-.+|.+.|+..+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888877653 225667888888888888888888888888887733 666777888888888888888888888877
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=1.1e-08 Score=56.98 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=17.9
Q ss_pred CCCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994 196 NIFPDNFSYRICINSYGARSDLEGMEIILREM 227 (496)
Q Consensus 196 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 227 (496)
|+.||..||+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.7e-05 Score=74.52 Aligned_cols=347 Identities=12% Similarity=0.084 Sum_probs=185.9
Q ss_pred ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCC------CCCc-chhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHH
Q 010994 61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGIC------VFAP-CDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQT 133 (496)
Q Consensus 61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 133 (496)
+...|..+.+.|.+.++.+-|.-.+-.|...... .-++ +.-.....+....|.+++|..+|.+..+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 4456777777777777776666555555432110 0112 3334444555677778888887776554
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHH----------HHCCC------
Q 010994 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM----------KAKNI------ 197 (496)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m----------~~~~~------ 197 (496)
|..|=..|-..|.+++|.++-+.--+- . =..||..-..-+-..+|.+.|++.|++. .....
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 333445566678888887776543221 1 2345555555566666777776666542 11100
Q ss_pred ---CCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccch
Q 010994 198 ---FPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG 274 (496)
Q Consensus 198 ---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 274 (496)
..|...|..-..-.-..|+.|.|+.++...+ + |-.+++..|-.|+.++|-++-++ .-|...
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AA 969 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-D---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAA 969 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-h---------hhhheeeEeeccCchHHHHHHHh------cccHHH
Confidence 1122222233333344566666666666554 1 33355555566666666666554 245566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcC------CCCchhHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 010994 275 YNFLISLYASLGNKSEVLRLWDLEKTACK------RYINRDYITMLEALM--KLGEHEEAEKVLKEWELSGNSYDTRIPN 346 (496)
Q Consensus 275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (496)
...+.+.|-..|++.+|..+|.+...-.. ..+. -..|...+. ...+.-.|.++|++.- . -..
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~ 1039 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELG---G-----YAH 1039 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhh
Confidence 66778888888888888888765432111 1111 011111221 1223334444444321 1 112
Q ss_pred HHHHHHHhcCchhHHHHHHH--------HHH--hcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhh-----h---
Q 010994 347 AVIIGYCNNGLVQNAEAILE--------DLV--EKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY-----V--- 408 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~--------~~~--~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--- 408 (496)
.-+..|-+.|.+.+|+++-- +++ +.....|+...+.-..-++...++++|..++..+.+-. .
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445777777777765421 112 22333466677777777777777787777766555400 0
Q ss_pred -------------cCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHH
Q 010994 409 -------------EGKGWKPDP----KVITSILSKLGDEGSVQDVEAFVAAL 443 (496)
Q Consensus 409 -------------~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 443 (496)
....-.|+. .....+...|.++|.+..|-+-|.+.
T Consensus 1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 011122333 34556667888888888887766544
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.76 E-value=1.5e-05 Score=75.31 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=140.1
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC
Q 010994 207 CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG 286 (496)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 286 (496)
.+.+......+.+|+.+++.++ +... -..-|..+...|+..|+++.|.++|.+. ..++-.|..|.+.|
T Consensus 738 aieaai~akew~kai~ildniq-dqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQ-DQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhh-hhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 4455666788888999998887 4433 3345777889999999999999998762 34666788899999
Q ss_pred CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHH
Q 010994 287 NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILE 366 (496)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 366 (496)
+|+.|.++-.+. .++......|..-..-+-..|++.+|++++-.+. .| ..-|.+|-+.|..+..+++..
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p-----~~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP-----DKAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc-----hHHHHHHHhhCcchHHHHHHH
Confidence 999998876543 3333444556666666778889999888875442 23 346788899999988888776
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994 367 DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 367 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
+-.-. .-..|...+..-|...|+...|...|-++-. |.+-++.|...+-|++|.++-+
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------------HHHHHHHhhhhhhHHHHHHHHh
Confidence 54321 1234667778888889999999888877654 5566677777777887776654
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=4e-06 Score=72.60 Aligned_cols=189 Identities=13% Similarity=0.021 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc---chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch--h
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG---IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR--D 309 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 309 (496)
.....+..+...+...|++++|...|+++....+ .+. .++..+..++...|++++|...++......+..... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 5566777788889999999999999999877543 222 466778888999999999999999888776632222 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHH
Q 010994 310 YITMLEALMKL--------GEHEEAEKVLKEWELSGNSYDTR-IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW 380 (496)
Q Consensus 310 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 380 (496)
+..+..++... |+.++|...++.+.+. .|+.. .+..+... . .... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YLRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HHHH------HHH--------HHH
Confidence 44455555544 6677788888777765 23322 22111111 0 0000 000 011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994 381 AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI 447 (496)
Q Consensus 381 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 447 (496)
..+...+.+.|++++|+..+++++..+ .+.+.....+..+..++...|++++|..+++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENY---PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 245567888888888888888888711 1112234677788888888888888888888776643
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.00029 Score=69.37 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010994 167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHF 246 (496)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 246 (496)
..|..+..+-.+.|...+|.+-|-+. -|+..|..+++...+.|.+++-.+++.-.. +..-+|...+ .||-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYIDS--ELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccchH--HHHHH
Confidence 34444555544444444444433221 133445555555555555555555444443 2222233222 34555
Q ss_pred HHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHH
Q 010994 247 YIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA 326 (496)
Q Consensus 247 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 326 (496)
|++.++..+.+++.. -||......+.+-|...|.++.|.-+|. +...|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHH
Confidence 555555444333321 1444444445555555555555444443 123344445555555555554
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 327 EKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 404 (496)
.+.-++. .+..+|..+-.+|...+.+.-| +|--.++.....-...++..|...|-+++.+.+++..+
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 4433222 1344555555555444433322 22222223333444555555555666555555555543
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=2e-05 Score=79.62 Aligned_cols=231 Identities=12% Similarity=0.057 Sum_probs=148.8
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHH
Q 010994 200 DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLD---WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYN 276 (496)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 276 (496)
+...|-..|......+++++|.++.++....-++.-. ...|.++++.-...|.-+...++|++..+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3455666777777777777777777776633333221 2345556666666677777777777766531 2234567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhc
Q 010994 277 FLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YDTRIPNAVIIGYCNN 355 (496)
Q Consensus 277 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 355 (496)
.|...|.+.+..++|.++++.|..... .....|...+..+.+.++.+.|..++.+..+.-++ -........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 777777777777788888877777665 55677777777777777777777777777765221 1233334445555667
Q ss_pred CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHhccCCH
Q 010994 356 GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP--KVITSILSKLGDEGSV 433 (496)
Q Consensus 356 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~ 433 (496)
|+.+.+..+|+......++ -...|+..+..-.+.|+.+.+..+|++++. .++.|-. ..|...+..=...|+-
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~-----l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIE-----LKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCChhHhHHHHHHHHHHHHhcCch
Confidence 7777777777777765444 455777777777777777777777777777 5555543 3455555554555555
Q ss_pred HHHHHH
Q 010994 434 QDVEAF 439 (496)
Q Consensus 434 ~~a~~~ 439 (496)
+.++.+
T Consensus 1688 ~~vE~V 1693 (1710)
T KOG1070|consen 1688 KNVEYV 1693 (1710)
T ss_pred hhHHHH
Confidence 544444
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=5.9e-05 Score=73.93 Aligned_cols=279 Identities=13% Similarity=0.091 Sum_probs=192.0
Q ss_pred cCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 010994 112 HGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191 (496)
Q Consensus 112 ~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (496)
+.++.|.++-++.. .+.+|..+..+-.+.|.+.+|++-|-+ . .|+..|..+++.+.+.|.|++-...+..
T Consensus 1089 ~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyik--a----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYIK--A----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHHh--c----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44444444433332 367899999999999999999887743 2 2888999999999999999999999888
Q ss_pred HHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 010994 192 MKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD 271 (496)
Q Consensus 192 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 271 (496)
.++..-.|... ..+|-+|++.+++.+.+.++ . .|+......+.+-|...|.++.|.-+|..
T Consensus 1159 aRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-----~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------- 1219 (1666)
T KOG0985|consen 1159 ARKKVREPYID--SELIFAYAKTNRLTELEEFI-----A---GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------- 1219 (1666)
T ss_pred HHHhhcCccch--HHHHHHHHHhchHHHHHHHh-----c---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------
Confidence 88776666554 47888999999988765543 1 26666667788899999999999888764
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994 272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351 (496)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (496)
..-|..+...+...|++..|.+.-++. .+..+|..+..+|...+.+.-|. |....+-....-..-++.-
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEY 1288 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHH
Confidence 455788888899999999998876633 56789999999998877766553 2222222233345678888
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC------CCHHHHHHHHH
Q 010994 352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK------PDPKVITSILS 425 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------p~~~~~~~l~~ 425 (496)
|-..|-+++.+.+++...-... .....|+.+.-.|++- ++++..+.++-.-. +-+++ -....|+.++.
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLER-AHMgmfTELaiLYsky-kp~km~EHl~LFws----RvNipKviRA~eqahlW~Elvf 1362 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLER-AHMGMFTELAILYSKY-KPEKMMEHLKLFWS----RVNIPKVIRAAEQAHLWSELVF 1362 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887653211 2445677777777664 34444444333322 01111 11234555555
Q ss_pred HHhccCCHHHH
Q 010994 426 KLGDEGSVQDV 436 (496)
Q Consensus 426 ~~~~~g~~~~a 436 (496)
.|.+-..++.|
T Consensus 1363 LY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1363 LYDKYEEYDNA 1373 (1666)
T ss_pred HHHhhhhhhHH
Confidence 56555555544
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=3.3e-06 Score=70.11 Aligned_cols=118 Identities=8% Similarity=0.042 Sum_probs=74.7
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH-HhcCc--hhHH
Q 010994 285 LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY-CNNGL--VQNA 361 (496)
Q Consensus 285 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a 361 (496)
.++.+++...++......+ .+...|..+...|...|++++|...++...+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4455666666665555554 5556666677777777777777777776666542 2455555555543 45555 3677
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..++++..+.++. +...+..+...+...|++++|+..|+++++
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777766555 566666677777777777777777777765
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=4.7e-05 Score=68.84 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCc
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD-TRIPNAVIIGYCNNGL 357 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 357 (496)
.-.+...|+.++|+..++.+....+ .+..........+...|+.++|.+.++.+... .|+ ....-.+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 3345567788888888887666554 55566666677788888888888888888776 344 4555667778888888
Q ss_pred hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010994 358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVE 437 (496)
Q Consensus 358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 437 (496)
..+|..+++......+. |+..|..|..+|...|+..++.....+ .+...|++++|.
T Consensus 390 ~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE-----------------------~~~~~G~~~~A~ 445 (484)
T COG4783 390 PQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE-----------------------GYALAGRLEQAI 445 (484)
T ss_pred hHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH-----------------------HHHhCCCHHHHH
Confidence 88888888888776555 778888888888888887777655554 344568888888
Q ss_pred HHHHHHHhcCCCCHHHH
Q 010994 438 AFVAALRTVIPMNRQMY 454 (496)
Q Consensus 438 ~~~~~~~~~~~~~~~~~ 454 (496)
..+....+....+...|
T Consensus 446 ~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 446 IFLMRASQQVKLGFPDW 462 (484)
T ss_pred HHHHHHHHhccCCcHHH
Confidence 88877776554444443
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.5e-08 Score=54.93 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=15.3
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAA 403 (496)
Q Consensus 372 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 403 (496)
|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.4e-06 Score=81.89 Aligned_cols=220 Identities=12% Similarity=0.116 Sum_probs=168.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHH
Q 010994 232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI 311 (496)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 311 (496)
+.+|-+..-..+...+.+.|-...|..+|+++ ..|...+.+|+..|+..+|..+.....+ .+|+...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 44566666677888899999999999999874 4577788899999999999998886655 448888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 391 (496)
.+++.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.++- -..+|-....+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHh
Confidence 8888877777788888888765432 1112222233478899999988887765443 5668888888888899
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcH
Q 010994 392 KTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGV 468 (496)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a 468 (496)
+++.|.+.|...+. ..|| ...|+.+-.+|.+.|+..+|...+++..+....+...|...+-...+.| ++|
T Consensus 534 k~q~av~aF~rcvt-------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT-------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhHHHHHHHHHHhh-------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 99999999999886 5555 4689999999999999999999888777755666777877777778888 778
Q ss_pred HHHHHHHHh
Q 010994 469 DELLDSMKA 477 (496)
Q Consensus 469 ~~~~~~m~~ 477 (496)
++.+.++.+
T Consensus 607 ~~A~~rll~ 615 (777)
T KOG1128|consen 607 IKAYHRLLD 615 (777)
T ss_pred HHHHHHHHH
Confidence 887777653
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.67 E-value=5.2e-06 Score=68.95 Aligned_cols=157 Identities=10% Similarity=0.012 Sum_probs=115.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCch
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLV 358 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 358 (496)
+..|...|+++.+....+.... +. . .+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4457778887776444322211 10 0 1123566777777777777764 44778888899999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHH-HhcCC--hHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHH
Q 010994 359 QNAEAILEDLVEKGKATTPNSWAVVAAGY-FDAGK--TERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQ 434 (496)
Q Consensus 359 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 434 (496)
++|...|++..+.++. +...+..+..++ ...|+ .++|.++++++++ ..| +...+..+...+...|+++
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~-------~dP~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA-------LDANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHHcCCHH
Confidence 9999999999887765 777888888764 66677 4899999999987 444 5677888888889999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHH
Q 010994 435 DVEAFVAALRTVIPMNRQMYHA 456 (496)
Q Consensus 435 ~a~~~~~~~~~~~~~~~~~~~~ 456 (496)
+|...|+++.+..+|+..-+..
T Consensus 162 ~Ai~~~~~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 162 QAIELWQKVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHHHHHHHHhhCCCCccHHHH
Confidence 9999999988887777655443
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.67 E-value=0.00011 Score=72.01 Aligned_cols=400 Identities=11% Similarity=-0.023 Sum_probs=193.5
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC---CHHHHHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK---TYQTYGALLNC 140 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~li~~ 140 (496)
.|..|-..|+...+...|...|+...+... -.........+.++...+++.|..+.-...+..| -...|--..-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 456666666666666677777777666441 2233344456777777777777776433333322 12223334455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH--HHHHhhcCChH
Q 010994 141 YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC--INSYGARSDLE 218 (496)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~~~~~ 218 (496)
|.+.+++..|..-|+...+..++ |...|..++.+|.+.|.+..|.++|.+.... .|+. +|... ...-+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence 66667777777777776665444 6667777777777777777777777666553 3432 22221 12234456666
Q ss_pred HHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------Hhccc-----------------
Q 010994 219 GMEIILREMESQP-----HIVLDWSTYASAAHFYIKANLIDKASDVLKKAE-------ERLEQ----------------- 269 (496)
Q Consensus 219 ~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~----------------- 269 (496)
+|...+....... +..--..++-.+...+.-.|-..+|...++.-+ .+...
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 6655554443110 000011111111111111222222222222111 10000
Q ss_pred ---C------------------------------------------ccchHHHHHHHHHh--------cCCHHHHHHHHH
Q 010994 270 ---K------------------------------------------DGIGYNFLISLYAS--------LGNKSEVLRLWD 296 (496)
Q Consensus 270 ---~------------------------------------------~~~~~~~l~~~~~~--------~~~~~~a~~~~~ 296 (496)
| +..+|..++..|.+ ..+...|+..+.
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 1 11222222222211 001122333333
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC
Q 010994 297 LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT 376 (496)
Q Consensus 297 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 376 (496)
...+... .+..+|+.+.- ....|.+.-|...|-+-.... +....+|..+...+.+..+++.|...|...+...+. |
T Consensus 808 kaV~L~a-nn~~~WnaLGV-lsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-n 883 (1238)
T KOG1127|consen 808 KAVSLCA-NNEGLWNALGV-LSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-N 883 (1238)
T ss_pred HHHHHhh-ccHHHHHHHHH-hhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-h
Confidence 3332222 22222332222 233344444444443333221 223445555555566677888888888887776554 6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHH----------HHHHHHHHHhc
Q 010994 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD----------VEAFVAALRTV 446 (496)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----------a~~~~~~~~~~ 446 (496)
...|-.........|+.-++..+|..-.+..+ +.|-.|...-+.+...-....|+.++ |.-.++....+
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~-~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCS-KEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc-cccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 66777666666677777777777776333111 23344444444433333444455443 33334444445
Q ss_pred CCCCHHHHHHHHHHHHhCC--CcHHHHHHH
Q 010994 447 IPMNRQMYHAFIKANIRNG--KGVDELLDS 474 (496)
Q Consensus 447 ~~~~~~~~~~l~~~~~~~g--~~a~~~~~~ 474 (496)
.|.+...|...+...-+.+ ++|.+...+
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6666777777766666665 455544444
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=2.5e-06 Score=66.89 Aligned_cols=109 Identities=11% Similarity=-0.099 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL 424 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 424 (496)
+......+...|++++|...|+......+. +...|..+...+...|++++|+..|++++. --+.+...+..+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~------l~p~~~~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM------LDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCcHHHHHHH
Confidence 344556666777777777777777666544 666677777777777777777777777765 2233456666666
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994 425 SKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA 460 (496)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 460 (496)
.++...|++++|...|+......|.++..|.....+
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 677777777777777777666666666666554443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=7.6e-06 Score=70.88 Aligned_cols=187 Identities=10% Similarity=-0.081 Sum_probs=131.1
Q ss_pred CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccc--h
Q 010994 199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIV-L-DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI--G 274 (496)
Q Consensus 199 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~ 274 (496)
.....+..+...+...|+++.|...|+++. ...+. | ...++..+..++...|++++|...++++.+..+..... +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALE-SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667788888999999999999999987 43321 1 12466778899999999999999999998765422221 4
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 010994 275 YNFLISLYASL--------GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN 346 (496)
Q Consensus 275 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (496)
+..+..++... |+.++|.+.++......+ .+...+..+..... ... .... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~------~~~~--------~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRN------RLAG--------KEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHH------HHHH--------HHH
Confidence 55566666654 788999999998877655 22222222211110 000 0000 112
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCC-C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKA-T-TPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+...|.+.|++++|...++...+..+. | ....+..+..++...|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4666788999999999999999876432 2 356888999999999999999999888765
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=3.9e-05 Score=73.50 Aligned_cols=231 Identities=17% Similarity=0.184 Sum_probs=110.9
Q ss_pred hHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC--------CCChhHHHHHHHHH
Q 010994 106 DLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEM-GI--------ALSTLTYNDIMCLY 176 (496)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~~~~~~~l~~~~ 176 (496)
..|...|+.+.|.+-.+.+.. ..+|..+...|.+..+.+-|.-.+-.|... |. .|+ .+=..+.-..
T Consensus 736 SfyvtiG~MD~AfksI~~IkS----~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIKS----DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHhh----hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445566666666655554443 456666666666666666666555555321 10 111 1111222223
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010994 177 SKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKA 256 (496)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 256 (496)
...|-.++|+.+|.+.++. ..|=..|...|.+++|.++-+.-. .-.. ..||......+-..+|.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D-RiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD-RIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc-ceeh---hhhHHHHHHHHHhhccHHHH
Confidence 3445555666666555442 223334555566666655544322 1111 23444455555555666666
Q ss_pred HHHHHHHHHh----------cc---------cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994 257 SDVLKKAEER----------LE---------QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 317 (496)
Q Consensus 257 ~~~~~~m~~~----------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (496)
++.|++.... .+ ..|...|.--...+-..|+.+.|+.+|... ..|.++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A---------~D~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA---------KDYFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh---------hhhhhheeeE
Confidence 6666542110 00 011111222222222333333333333311 2233444444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHH
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (496)
|-.|+.++|.++-++- -|....-.+.+.|-..|++.+|...|.+..
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4455555555444321 244555667788888888888888887654
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=1.8e-05 Score=65.59 Aligned_cols=159 Identities=13% Similarity=0.011 Sum_probs=112.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010994 170 NDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249 (496)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (496)
..+-..+...|+-+....+....... ..-|....+..+....+.|++..|...+++.. ...+ +|+.+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p-~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAP-TDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCC-CChhhhhHHHHHHHH
Confidence 55566666777777776666654332 22244455557777788888888888888886 5554 788888888888888
Q ss_pred cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329 (496)
Q Consensus 250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (496)
.|+++.|..-|.+..+..+ .+...++.+...+.-.|+.+.|..++........ -+...-..+.......|+++.|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 8888888888887776543 5566777777778888888888888876655544 5566666777777778888888776
Q ss_pred HHHH
Q 010994 330 LKEW 333 (496)
Q Consensus 330 ~~~~ 333 (496)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.64 E-value=0.00059 Score=66.46 Aligned_cols=405 Identities=14% Similarity=0.038 Sum_probs=222.4
Q ss_pred HHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhh--HHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHH
Q 010994 72 LRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLD--LIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTD 148 (496)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 148 (496)
....+++++|+.....+.++.+ .. .++.++. .+.+.|+.++|..+++......+ |..+...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~P--n~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHP--NA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCC--Cc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3466778888888888888762 12 2333333 44578888888888877766654 6777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC----------hH
Q 010994 149 KALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD----------LE 218 (496)
Q Consensus 149 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~ 218 (496)
+|..+|+..... -|+......+..+|.+.+++.+-.+.--+|-+. .+-+...+-++++.....-. +.
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 888888888765 456677777777888877776544444444432 33345555555555443211 23
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010994 219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK-KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDL 297 (496)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 297 (496)
-|.+.++.+..+.|..-+..-.......+...|.+++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666444322222222333445566778888888883 333333333444445666777778888888887777
Q ss_pred HHhhcCCCCchhHHHHHHHH----------------HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH---hcCch
Q 010994 298 EKTACKRYINRDYITMLEAL----------------MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC---NNGLV 358 (496)
Q Consensus 298 ~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~ 358 (496)
....+. .| |...+..+ ...+..+...+...+..... ....|-+-+..+. .-|+.
T Consensus 252 Ll~k~~-Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ 324 (932)
T KOG2053|consen 252 LLEKGN-DD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDS 324 (932)
T ss_pred HHHhCC-cc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCCh
Confidence 777665 22 22222211 11222333333333222211 1112222222222 23555
Q ss_pred hHHHHHH-HHHHhc---------------------------CCCCCHh-------HHHHHHHHHHhcC-----ChHHHHH
Q 010994 359 QNAEAIL-EDLVEK---------------------------GKATTPN-------SWAVVAAGYFDAG-----KTERGFQ 398 (496)
Q Consensus 359 ~~a~~~~-~~~~~~---------------------------~~~p~~~-------~~~~l~~~~~~~~-----~~~~a~~ 398 (496)
+++...| ++.-.. +..++.. .+...+..-...| ..+.-..
T Consensus 325 ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 325 EEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 5544332 211110 0001111 0111111112222 1233344
Q ss_pred HHHHHHHhhhcC----CCCCCCHH---------HHHHHHHHHhccCCHHH---HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010994 399 CMKAALSVYVEG----KGWKPDPK---------VITSILSKLGDEGSVQD---VEAFVAALRTVIPMNRQMYHAFIKANI 462 (496)
Q Consensus 399 ~~~~~~~~~~~~----~~~~p~~~---------~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~ 462 (496)
++.+....+... .+.-|+.. +.+.++..|.+.++... |.-+++......+-|..+--.+|+.|+
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 444443333222 12233332 34466778888887764 444555444456777888888999999
Q ss_pred hCC--CcHHHHHHHHHhCCCCCChhHHHHH
Q 010994 463 RNG--KGVDELLDSMKADGIDEDEETKEIL 490 (496)
Q Consensus 463 ~~g--~~a~~~~~~m~~~g~~p~~~t~~~l 490 (496)
-.| ..|.++++.|--..|.-|..-|-++
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQTDTLGHLIF 514 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhhccchHHHH
Confidence 999 7888999888777777776655544
No 123
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=4.4e-05 Score=72.29 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=135.5
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCH
Q 010994 68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT 147 (496)
Q Consensus 68 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 147 (496)
.+.+-...+.|.+|+.+++.+..+. .....+..+.+-|...|+++.|.++|.+ ...++-.|..|.+.|++
T Consensus 738 aieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e-------~~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTE-------ADLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHh-------cchhHHHHHHHhccccH
Confidence 3444556678888888888888776 4566677788888899999999988854 34567788889999999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994 148 DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM 227 (496)
Q Consensus 148 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 227 (496)
+.|.++-++. .|.......|-+-..-.-+.|++.+|.++|-... .|+ ..|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 9998886554 3445566677777777778888888887765432 244 3566778888888888877766
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 010994 228 ESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 228 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
. ...+ ..|...+..-|-..|+...|..-|-+.. -|.+-++.|-.++-|++|.++-+
T Consensus 877 h-~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 877 H-GDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred C-hhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 4 2111 2344446666777788888877765532 25555666777777777766544
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=3.5e-05 Score=63.94 Aligned_cols=117 Identities=22% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN---- 354 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 354 (496)
...|+..|++++|++..... .+......=+..+.+..+++-|.+.++.|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 33455555555555555420 112222222333444555555555555555431 33344444444432
Q ss_pred cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 355 NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..+++.++.
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 23455555555555543 334555555555555555555555555555554
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=6.1e-05 Score=62.58 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=159.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHH
Q 010994 140 CYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEG 219 (496)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 219 (496)
-+.-.|++..++..-+...... -+...-..+.++|...|.+.....- .+. |-.|.......+......-++.+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence 3344577777776655543331 3455555566777777776554332 222 123333334333333333444443
Q ss_pred HH-HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994 220 ME-IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLE 298 (496)
Q Consensus 220 a~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 298 (496)
-. ++.+.+. ......+......-...|++.|++++|++..+. + -+......=...+.+..+++-|.+.++.|
T Consensus 91 ~~~~l~E~~a-~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 91 ILASLYELVA-DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----G--ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHH-hhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3444454 444434434444445678899999999998886 2 22333334455667788899999999988
Q ss_pred HhhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994 299 KTACKRYINRDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374 (496)
Q Consensus 299 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (496)
.+. .+..|.+.+..++.+ .+.+..|.-+|++|.++ ..|+..+.+....++...|++++|..+++....+...
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 775 445677767776654 45689999999999775 5788888888999999999999999999999988766
Q ss_pred CCHhHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 010994 375 TTPNSWAVVAAGYFDAGKTERG-FQCMKAAL 404 (496)
Q Consensus 375 p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 404 (496)
++.+...++.+-...|...++ .+.+....
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 777777777777777766554 34444444
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=4.1e-05 Score=76.51 Aligned_cols=239 Identities=11% Similarity=0.085 Sum_probs=139.4
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010994 165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNF-SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASA 243 (496)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 243 (496)
+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------hh
Confidence 4566777777777778888888877766554 34432 233333345555554443333 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCH
Q 010994 244 AHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH 323 (496)
Q Consensus 244 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (496)
+.......++.....++..|.+.+ -+..++..+..+|-+.|+.+++..+|+++....+ .+....+.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hH
Confidence 333333334433344444444422 3344677777777788888888888887777664 6667777777777777 77
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAA 403 (496)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 403 (496)
++|..++.+.... |...+++..+..+|.++.+..+. +...+ .++.+++
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHHH
Confidence 7777777766553 44555666666666666665332 22222 2222222
Q ss_pred HHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 010994 404 LSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIR 463 (496)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (496)
.. ..|..--..++.-+-..|...++|+++..+++.+.+..+.|.....-++.+|..
T Consensus 214 ~~----~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 214 LG----HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred Hh----hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 22 012222233444455566666777777777777777777777777777777763
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=9.5e-06 Score=80.02 Aligned_cols=131 Identities=11% Similarity=0.013 Sum_probs=89.1
Q ss_pred CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 010994 96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC 174 (496)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 174 (496)
..++.+..+..+..+.|.+++|+.+++.+.+..|+ ......+...+.+.+++++|+..+++....... +....+.+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 34566666666777777777777777777777664 556666777777777777777777777766433 5555666666
Q ss_pred HHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994 175 LYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME 228 (496)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 228 (496)
++.+.|++++|..+|++....+ .-+..++..+..++-..|+.++|...|++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777777632 2235666677777777777777777777765
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=2.2e-05 Score=65.09 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 010994 276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN 355 (496)
Q Consensus 276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (496)
..+-..+...|+-+....+........+ .+.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4455566666666666666554333222 333444556677777777777777777776553 55777777777777777
Q ss_pred CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHH
Q 010994 356 GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD 435 (496)
Q Consensus 356 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 435 (496)
|+++.|..-|.+..+..+. +...++.+...+.-.|+.+.|..++..+.. .-.-|..+-..+..+....|++++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l------~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL------SPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh------CCCCchHHHHHHHHHHhhcCChHH
Confidence 7777777777777775444 556677777777777777777777777765 333355666666677777777777
Q ss_pred HHHHHH
Q 010994 436 VEAFVA 441 (496)
Q Consensus 436 a~~~~~ 441 (496)
|..+-.
T Consensus 221 A~~i~~ 226 (257)
T COG5010 221 AEDIAV 226 (257)
T ss_pred HHhhcc
Confidence 777654
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.57 E-value=4.1e-05 Score=76.49 Aligned_cols=151 Identities=11% Similarity=0.039 Sum_probs=81.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL 281 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 281 (496)
..+..+..+|-+.|+.++|..+++++. +.++ -|..+.|.+...|... +.++|.+++.+....
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLV-KADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH-hcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 345555666666666666666666666 4443 5566666666666666 666666666654443
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCchhH
Q 010994 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS-GNSYDTRIPNAVIIGYCNNGLVQN 360 (496)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 360 (496)
+...+++..+.++|..+....+ . +++.-.++.+.+... |..--..++-.+-..|...+++++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~-~----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNS-D----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCc-c----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 3334445555555554444332 1 222222233333222 222223344455566666777777
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994 361 AEAILEDLVEKGKATTPNSWAVVAAGYF 388 (496)
Q Consensus 361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 388 (496)
+..+++.+.+.... |......++.+|.
T Consensus 242 ~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 77777777776555 5556666666655
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=5.1e-06 Score=65.17 Aligned_cols=118 Identities=8% Similarity=-0.044 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994 362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
..++++..+. ++..+......+...|++++|...|+.++. --+.+...+..+..++...|++++|...|+
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVM------AQPWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456666664 333466778899999999999999999987 233466788999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHH
Q 010994 442 ALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV 491 (496)
Q Consensus 442 ~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~ 491 (496)
......|.++..+..+..++.+.| ++|+..|++..+ +.|+...+..+.
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~ 132 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIR 132 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence 999988999999999999999999 899999999887 568776655443
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=6.6e-05 Score=61.87 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=138.6
Q ss_pred cCChHHHHHHHHHHHHh---c-ccCccc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHH
Q 010994 250 ANLIDKASDVLKKAEER---L-EQKDGI-GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHE 324 (496)
Q Consensus 250 ~~~~~~a~~~~~~m~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 324 (496)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+....+ .+...-..-.--+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchh
Confidence 46788888888888543 2 334443 345556667788899999999987777663 33333332233345578899
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 325 EAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404 (496)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 404 (496)
+|.++++.+.+.. +.|..++-.-+...-..|+.-+|++-+....+.-+ .|...|..+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998875 44666776666667778888888888888777633 488999999999999999999999999988
Q ss_pred HhhhcCCCCCC-CHHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994 405 SVYVEGKGWKP-DPKVITSILSKLGDEG---SVQDVEAFVAALRTVIPMNRQMYHAF 457 (496)
Q Consensus 405 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l 457 (496)
- +.| ++..+..+...+.-.| +.+.|.+++.+..+..+.+.+.+..+
T Consensus 182 l-------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 182 L-------IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred H-------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 6 555 4455666666554444 55667788887776555455554433
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=7.1e-05 Score=73.99 Aligned_cols=180 Identities=15% Similarity=0.128 Sum_probs=116.8
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
.+...+..|.....+.|+.++|..+++...+..+ .+......+...+.+.+++++|....++.....+. +......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 4566777777777788888888888877666655 55566677777777888888888888777776422 455566667
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 429 (496)
.++.+.|++++|..+|+++...+.. +..++..+..++...|+.++|...|+++++ ...|...-|+.++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~------~~~~~~~~~~~~~----- 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD------AIGDGARKLTRRL----- 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hhCcchHHHHHHH-----
Confidence 7777778888888888887774433 466777777788888888888888888776 4445555555443
Q ss_pred cCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhC
Q 010994 430 EGSVQDVEAFVAALRT-----VIPMNRQMYHAFIKANIRN 464 (496)
Q Consensus 430 ~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 464 (496)
+++..-..+++.+.- +.+..+.+...++.-|.+.
T Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 230 -VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred -HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 223333344444322 1233344455555555443
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.00089 Score=61.54 Aligned_cols=130 Identities=6% Similarity=0.004 Sum_probs=85.8
Q ss_pred CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 010994 96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC 174 (496)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 174 (496)
.+.+.+..+++-+... ..+++...++++....| ....|..-|..-.+.++++...++|.+-... ..+...|..-+.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHH
Confidence 5566666666665554 89999999999998888 5888999999999999999999999987665 236777777776
Q ss_pred HHHh-cCCCCcHH----HHHHHHH-HCCCCCCh-hhHHHHHHH---------HhhcCChHHHHHHHHHhh
Q 010994 175 LYSK-TGQYEKVP----DVLTEMK-AKNIFPDN-FSYRICINS---------YGARSDLEGMEIILREME 228 (496)
Q Consensus 175 ~~~~-~~~~~~a~----~~~~~m~-~~~~~p~~-~~~~~li~~---------~~~~~~~~~a~~~~~~~~ 228 (496)
--.+ +|+...+. +.|+-.. +.|..+-. ..|+..+.- +..+.+++...++++++.
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 5443 34444422 2333333 33544332 234444432 233445677888888887
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=9.8e-06 Score=63.25 Aligned_cols=102 Identities=14% Similarity=0.026 Sum_probs=69.8
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
.....+...+...|++++|...|+.+.+.+.. +...+..+...+...|++++|...++.++. ..+.+...+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~ 90 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAA------LDPDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCChHHHHH
Confidence 44555666677777788888777777766543 666777777777777777787777777765 22334566666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNR 451 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 451 (496)
+...+...|++++|...|+...+..|.+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 67777777778877777777666544333
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00031 Score=58.11 Aligned_cols=187 Identities=17% Similarity=0.118 Sum_probs=118.9
Q ss_pred CChHHHHHHHHHhhcC--CC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994 215 SDLEGMEIILREMESQ--PH-IVLD-WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~--~~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (496)
.+.++..+++.++... .+ ..++ +..|..++-+....|+.+.|...++++.+.-+ .+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchhh
Confidence 3455555555555411 11 2232 44455566666777778888888877766542 222222222223445678888
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
|.++++......+ .|..++..-+...-..|+--+|.+-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 8888887766654 55566665566666667777777777777665 455788888888888888888888888888876
Q ss_pred cCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHH
Q 010994 371 KGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALS 405 (496)
Q Consensus 371 ~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 405 (496)
..+. ++..+..+...+...| +.+.+.++|.++++
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5433 5555566665555444 45667888888876
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.00016 Score=65.54 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=52.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 010994 319 KLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQ 398 (496)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 398 (496)
..|+++.|+..++.+.+.- +-|+.......+.+.+.++..+|.+.++.+....+. .....-.+..+|.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 3445555555555544431 112333334444455555555555555555443221 13344444455555555555555
Q ss_pred HHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010994 399 CMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAF 439 (496)
Q Consensus 399 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 439 (496)
.+++... ..+-|+..|..|..+|...|+..+|...
T Consensus 396 ~L~~~~~------~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 396 ILNRYLF------NDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHhh------cCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 5555443 3334444555555555555554444443
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.2e-06 Score=49.68 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALST 166 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 166 (496)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=2.5e-05 Score=60.87 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY 387 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 387 (496)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|+++.|...+++..+.++. +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 445556666677777777777777776653 235566667777777777777777777777766533 566677777777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010994 388 FDAGKTERGFQCMKAALS 405 (496)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~ 405 (496)
...|++++|...|+++++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 778888888888877776
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.25 E-value=1.8e-06 Score=48.50 Aligned_cols=33 Identities=39% Similarity=0.598 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010994 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL 164 (496)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 164 (496)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=3.4e-05 Score=70.38 Aligned_cols=119 Identities=12% Similarity=0.116 Sum_probs=81.0
Q ss_pred hhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCc
Q 010994 105 LDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEK 184 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 184 (496)
+..+...++++.|+.+|+++.+.+|+.. ..++..+...++-.+|.+++++..+.. +.|...+..-...+.+.++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 4455556677777777777777666533 346666666777777777777776542 2356666666677777777777
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994 185 VPDVLTEMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILREME 228 (496)
Q Consensus 185 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 228 (496)
|+.+.+++... .|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus 253 AL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777764 444 3477777777777888877777777665
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=2.3e-06 Score=48.08 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC
Q 010994 167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP 199 (496)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 199 (496)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777776665
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=5.6e-06 Score=46.84 Aligned_cols=33 Identities=27% Similarity=0.561 Sum_probs=19.2
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT 376 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 376 (496)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=8.9e-05 Score=67.72 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
...++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+..+. +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4456666677788888888888887763 33 4455777777777788888888888765443 66667777777888
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 390 AGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
.++++.|+.+.+++.. ..|+. .+|..|..+|...|+++.|...++.+.-
T Consensus 247 k~~~~lAL~iAk~av~-------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE-------LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888876 56655 5888888888888888888887776544
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=0.00014 Score=55.15 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKA--TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
+..+...+.+.|++++|...|..+.+.... .....+..+...+.+.|+++.|...|+.+.... .+.......+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccHHHHH
Confidence 344555555666666666666666554321 012344556666666666666666666665410 011111334555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY 454 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 454 (496)
+..++.+.|+.++|...++.+....|.+....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 55556666666666666666665555554443
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.013 Score=57.59 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=138.6
Q ss_pred HhhcCHHHHHHHHHhchhcCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHH
Q 010994 109 GRVHGFLSAESYFSNLKDDEKTYQTYGALLNC--YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVP 186 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 186 (496)
...+++..|.+-..++....||... ..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 4567888888888888888786432 233333 45788889999888888776655 8888888888899999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-Ch---------HHH
Q 010994 187 DVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN-LI---------DKA 256 (496)
Q Consensus 187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~---------~~a 256 (496)
.+|++..+. .|+..-...+..+|.+.+++.+-.++--++- + +.+-+...+=++++.+...- .. .-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~Ly-K-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLY-K-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999988764 5667777777888888877765444333332 1 22123333334444444331 11 124
Q ss_pred HHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHHHHHHHHHH-HHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 257 SDVLKKAEERL-EQKDGIGYNFLISLYASLGNKSEVLRLWDL-EKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWE 334 (496)
Q Consensus 257 ~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (496)
.+.++.+.+.+ ..-+..-...-...+...|++++|++++.. ........+...-+.-+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444443332 111122222233344567778888888852 2222222333344456677778888888888888888
Q ss_pred hcCC
Q 010994 335 LSGN 338 (496)
Q Consensus 335 ~~~~ 338 (496)
..|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 7753
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.09 E-value=3.7e-05 Score=54.86 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCC--------CCcHHHHHHHHHHCCCCCChhhHH
Q 010994 135 GALLNCYVRQRQTDKALSHFRKMKEMGI-ALSTLTYNDIMCLYSKTGQ--------YEKVPDVLTEMKAKNIFPDNFSYR 205 (496)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~m~~~~~~p~~~~~~ 205 (496)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-..+.+|++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677999999999999999999 8999999999998876542 235677888898888999999999
Q ss_pred HHHHHHhh
Q 010994 206 ICINSYGA 213 (496)
Q Consensus 206 ~li~~~~~ 213 (496)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00029 Score=55.52 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=38.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994 314 LEALMKLGEHEEAEKVLKEWELSGNSYDT--RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 391 (496)
...+...|++++|...|+.+......++. ...-.+...+...|++++|+..++...... .....+......|.+.|
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCC
Confidence 34444455555555555555544311111 112233444445555555555554422211 12334444455555555
Q ss_pred ChHHHHHHHHH
Q 010994 392 KTERGFQCMKA 402 (496)
Q Consensus 392 ~~~~a~~~~~~ 402 (496)
+.++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555555544
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00029 Score=55.55 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=53.8
Q ss_pred cCChHHHHHHHHHHHHhcccC--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc--hhHHHHHHHHHhcCCHHH
Q 010994 250 ANLIDKASDVLKKAEERLEQK--DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN--RDYITMLEALMKLGEHEE 325 (496)
Q Consensus 250 ~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 325 (496)
.++...+...++.+....+.. .....-.+...+...|++++|...|+......+.+.. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555554432211 0112222334455555555555555555544322211 122334455555566666
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHH
Q 010994 326 AEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367 (496)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (496)
|...++...... .....+....+.|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 665554432221 2223444555556666666666665554
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00027 Score=53.52 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCC-CCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC----HHHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGIC-VFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT----YQTYGALL 138 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~li 138 (496)
++..+...+.+.|++++|.+.|+.+.+.... +..+.....+...+.+.|+++.|...|+.+....|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555666666777777777777777664411 011222333344444555555555555544443332 23344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 010994 139 NCYVRQRQTDKALSHFRKMKEM 160 (496)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~ 160 (496)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 4445555555555555554443
No 150
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.94 E-value=0.014 Score=52.78 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=70.5
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA 136 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 136 (496)
..+.|..+|-.||..+..++..++..+++++|... +|.-+......+..-....++...+.+|.+.....-+...|..
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l 114 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML 114 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence 56778999999999999999999999999999875 4456666666666666678899999999998887777888887
Q ss_pred HHHHHHhcC
Q 010994 137 LLNCYVRQR 145 (496)
Q Consensus 137 li~~~~~~g 145 (496)
.++.--+.+
T Consensus 115 Yl~YIRr~n 123 (660)
T COG5107 115 YLEYIRRVN 123 (660)
T ss_pred HHHHHHhhC
Confidence 777655544
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.2e-05 Score=43.93 Aligned_cols=30 Identities=40% Similarity=0.694 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGI 162 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 162 (496)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
No 152
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.94 E-value=8e-05 Score=60.32 Aligned_cols=97 Identities=21% Similarity=0.451 Sum_probs=65.1
Q ss_pred HHHHHhchhcCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC----------
Q 010994 118 ESYFSNLKDDEKTYQTYGALLNCYVRQ-----RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY---------- 182 (496)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~---------- 182 (496)
...|+.......|-.+|..+++.|.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHh
Confidence 345555555567888888899888755 6778888888999999999999999999998764 332
Q ss_pred -------CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994 183 -------EKVPDVLTEMKAKNIFPDNFSYRICINSYGARS 215 (496)
Q Consensus 183 -------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 215 (496)
+-|++++++|...|+.||..|+..+++.+++.+
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 224444445554455555555554444444433
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00025 Score=51.00 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=45.9
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSK 426 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 426 (496)
.+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++.+.. -.+.+..++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~ 77 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALE------LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCcchhHHHHHHHH
Confidence 3444455555555555555555543222 234455555555555555555555555554 112222344455555
Q ss_pred HhccCCHHHHHHHHHHHH
Q 010994 427 LGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~ 444 (496)
+...|+++.|...+....
T Consensus 78 ~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 78 YYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 555555555555555443
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00017 Score=66.25 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEM--GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC 207 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 207 (496)
+......+++.+....+++.+..++-+.... ....-..|.+++++.|.+.|..++++.++..=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444445555555555555565555555433 12122333446666666666666666666665566666666666666
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010994 208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249 (496)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (496)
++.+.+.|++..|.++...|. ..+...+..++..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~-lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMM-LQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHH-HhhccCCchHHHHHHHHHHH
Confidence 666666666666666655555 23332444444444444433
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.90 E-value=0.012 Score=50.63 Aligned_cols=180 Identities=13% Similarity=0.018 Sum_probs=95.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccCccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh-
Q 010994 243 AAHFYIKANLIDKASDVLKKAEERLEQKDGI--GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK- 319 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 319 (496)
....+...|++++|.+.|+++....+.+... ..-.++.++.+.+++++|...++......+......+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 3444455566666666666665543322111 1123445556666666666666666555553333333333333221
Q ss_pred -c---------------CC---HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHH
Q 010994 320 -L---------------GE---HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW 380 (496)
Q Consensus 320 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 380 (496)
. .+ ...|...|+.+.+. -|+ ..-..+|...+..+.+. =...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH----HHHHH
Confidence 0 11 22344445554444 222 22234444433333321 00111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994 381 AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 381 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
-.+..-|.+.|.+..|+.-++.+++.+ .+.+........+..+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDY---PDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 245566888888888988888888743 3334445667778888888899888888777654
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0015 Score=57.99 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994 242 SAAHFYIKANLIDKASDVLKKAEERLEQK-----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 316 (496)
Q Consensus 242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (496)
.....|-..|++++|.+.|.+..+..... -...|.....+|.+. ++++|+..++. .+..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A~~~ 103 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------AIEI 103 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------HHHH
Confidence 33455666777777777777653322111 112233333333332 55555555553 3456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CchhHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHHh
Q 010994 317 LMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN-GLVQNAEAILEDLVEK----GKATT--PNSWAVVAAGYFD 389 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~ 389 (496)
|...|++..|-+.+..+ ...|-.. |+++.|.+.|++..+. + .+. ..++..+...+.+
T Consensus 104 y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 104 YREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 66777777776665544 3344555 7788888888776542 2 111 2356677788899
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCC---CC--HHHHHHHHHHHHh
Q 010994 390 AGKTERGFQCMKAALSVYVEGKGWKPDPK-VITSILSKLGDEGSVQDVEAFVAALRTVIP---MN--RQMYHAFIKANIR 463 (496)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~l~~~~~~ 463 (496)
.|++++|+++|++...........+++.. .+-..+-++...||...|...++......| .+ ......|+.+|-.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 99999999999998873222222233332 222333355567899999999998876432 22 3567777888877
Q ss_pred CC
Q 010994 464 NG 465 (496)
Q Consensus 464 ~g 465 (496)
..
T Consensus 248 ~D 249 (282)
T PF14938_consen 248 GD 249 (282)
T ss_dssp T-
T ss_pred CC
Confidence 66
No 157
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00031 Score=64.56 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=93.7
Q ss_pred cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 010994 269 QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC--KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN 346 (496)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (496)
+.+......+++.+....+.+.+..++-...... ...-..|..++++.|.+.|..+.+..+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3556677777888777778888888777665542 22334566788888888888888888888888888888888888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA 390 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 390 (496)
.+++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888887776666777777666666655
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.85 E-value=0.0008 Score=61.79 Aligned_cols=87 Identities=7% Similarity=-0.033 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH
Q 010994 317 LMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERG 396 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 396 (496)
+...|+++.|...|.++.+... .+...|..+..+|...|++++|+..++++++.+.. +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 3344445555555444444321 13333444444444444444444444444443322 333444444444444444444
Q ss_pred HHHHHHHHH
Q 010994 397 FQCMKAALS 405 (496)
Q Consensus 397 ~~~~~~~~~ 405 (496)
+..|++++.
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 444444443
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00053 Score=58.38 Aligned_cols=104 Identities=20% Similarity=0.172 Sum_probs=87.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 394 (496)
.-+.+.+++.+|...|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 35677899999999999999874 337777888889999999999999999998886544 4568999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994 395 RGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427 (496)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 427 (496)
+|++.|+++++ +.|+..+|-.=+...
T Consensus 167 ~A~~aykKaLe-------ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKALE-------LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhhc-------cCCCcHHHHHHHHHH
Confidence 99999999986 889988777655543
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.82 E-value=0.00027 Score=50.58 Aligned_cols=77 Identities=8% Similarity=0.152 Sum_probs=46.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcC--------chhHHHHHHHHHHhcCCCCCHhHHHHH
Q 010994 313 MLEALMKLGEHEEAEKVLKEWELSGN-SYDTRIPNAVIIGYCNNG--------LVQNAEAILEDLVEKGKATTPNSWAVV 383 (496)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l 383 (496)
.|..|...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444555666666777777776666 666677776666655432 233445566666666666666666666
Q ss_pred HHHHHh
Q 010994 384 AAGYFD 389 (496)
Q Consensus 384 ~~~~~~ 389 (496)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.00037 Score=61.58 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG-YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG 386 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 386 (496)
.+|..++....+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357788888888888999999999998543 2344455444444 33356777799999998876 33477888999999
Q ss_pred HHhcCChHHHHHHHHHHHHhhhcCCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994 387 YFDAGKTERGFQCMKAALSVYVEGKGWKPDP---KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR 451 (496)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 451 (496)
+...|+.+.|..+|++++. .+.++. ..|...+..=.+.|+++.+.++.+++.+..+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~------~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS------SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC------TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999986 343333 4888888888888999999999988888665533
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00059 Score=62.64 Aligned_cols=92 Identities=14% Similarity=-0.087 Sum_probs=54.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCch
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLV 358 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 358 (496)
...+...|++++|+..|+......+ .+...|..+..+|.+.|++++|...++.+.+... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 3445556666666666666655544 4445555666666666666666666666665432 2344555556666666666
Q ss_pred hHHHHHHHHHHhcC
Q 010994 359 QNAEAILEDLVEKG 372 (496)
Q Consensus 359 ~~a~~~~~~~~~~~ 372 (496)
++|...|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666666543
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=4.3e-05 Score=41.67 Aligned_cols=29 Identities=31% Similarity=0.704 Sum_probs=15.4
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (496)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.027 Score=53.89 Aligned_cols=180 Identities=8% Similarity=0.030 Sum_probs=91.2
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCC----Cc--chhhhhhhHHHhhcCHHHHHHHHHhchhcCCC
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVF----AP--CDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT 130 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 130 (496)
...|.+..|..|...-...-.++.|...|-....-....+ .. ..-....+.-+-.|++++|++.+-.+.+.+
T Consensus 687 EdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 687 EDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred hcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 3557777787777776666666666665554433211000 00 000112344455688888888886665432
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHH
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS----TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRI 206 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 206 (496)
..|..+.+.|++-...++++. -|-..| ...|+.+...++....|++|.+.|..-.. -..
T Consensus 765 -----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~ 827 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN 827 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence 344556666766665555432 111111 23566666666666666666666654321 112
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010994 207 CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK 261 (496)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 261 (496)
.+.++.+..++++-+.+.+.+. .+....-.+..++.+.|.-++|.+.|-
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4444555555555444444443 122223334455555555555554443
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=0.00014 Score=51.06 Aligned_cols=79 Identities=22% Similarity=0.117 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994 251 NLIDKASDVLKKAEERLEQ-KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329 (496)
Q Consensus 251 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (496)
|+++.|+.+++++.+..+. ++...+..+..+|.+.|++++|+.+++. ....+ .+......+..++.+.|++++|..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555544331 1333333455555555555555555554 22111 1222222335555555555555555
Q ss_pred HH
Q 010994 330 LK 331 (496)
Q Consensus 330 ~~ 331 (496)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00045 Score=58.79 Aligned_cols=99 Identities=15% Similarity=0.038 Sum_probs=79.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh
Q 010994 280 SLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ 359 (496)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (496)
.-..+.+++.+|+..|...+...+ .+..-|..-..+|++.|.++.|.+-.+....... .-...|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence 346778999999999998888766 6677788889999999999999998888877632 23568899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHH
Q 010994 360 NAEAILEDLVEKGKATTPNSWAV 382 (496)
Q Consensus 360 ~a~~~~~~~~~~~~~p~~~~~~~ 382 (496)
+|.+.|++.++.. |+-.+|-.
T Consensus 167 ~A~~aykKaLeld--P~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALELD--PDNESYKS 187 (304)
T ss_pred HHHHHHHhhhccC--CCcHHHHH
Confidence 9999999998854 55555543
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.74 E-value=0.0012 Score=58.31 Aligned_cols=145 Identities=11% Similarity=0.054 Sum_probs=108.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994 273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK-LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351 (496)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (496)
.+|..++...-+.+..+.|..+|...... .......|......-.. .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 46888999999999999999999988743 32445556655555333 57777799999999987 45578889999999
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994 352 YCNNGLVQNAEAILEDLVEKGKATTP---NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 427 (496)
+.+.++.+.|..+|++.... +.++. ..|...+.--.+.|+.+.+..+.+++.+ .-|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~-------~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE-------LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH-------HTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HhhhhhHHHHHHHHh
Confidence 99999999999999999876 33232 4899999999999999999999999987 345544444454444
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00057 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=8.4
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 010994 243 AAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m 263 (496)
+..++...+++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=7.5e-05 Score=52.40 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994 321 GEHEEAEKVLKEWELSGNS-YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC 399 (496)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 399 (496)
|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+.. +....-.+..+|.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555566666655554321 1223333355556666666666666655 222111 223333445555666666666665
Q ss_pred HHH
Q 010994 400 MKA 402 (496)
Q Consensus 400 ~~~ 402 (496)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0023 Score=52.19 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..+...+...|++++|...|++..+.+..++ ...+..+...+.+.|++++|...+.+++.
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444555555555554443322211 23444555555555555555555555544
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.029 Score=50.29 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=63.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC---CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994 316 ALMKLGEHEEAEKVLKEWELSG---NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK 392 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 392 (496)
-..+.|.+..|.+.+.+.+... ..|+...|........+.|+..+|+.-.+...+.+.. -...|..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHH
Confidence 4567899999999999988653 2345555666666777889999999998888875311 11233333455667788
Q ss_pred hHHHHHHHHHHHH
Q 010994 393 TERGFQCMKAALS 405 (496)
Q Consensus 393 ~~~a~~~~~~~~~ 405 (496)
|++|.+-|+++.+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998887
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.67 E-value=0.0019 Score=50.09 Aligned_cols=91 Identities=10% Similarity=-0.137 Sum_probs=47.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 010994 243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE 322 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 322 (496)
+...+...|++++|.++|+.+....+ .+..-|-.|.-++-..|++++|+..|.......+ .++..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 44444555555555555555544322 3444455555555555555555555554444443 444555555555555555
Q ss_pred HHHHHHHHHHHHh
Q 010994 323 HEEAEKVLKEWEL 335 (496)
Q Consensus 323 ~~~a~~~~~~~~~ 335 (496)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 173
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.044 Score=49.87 Aligned_cols=138 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred HHhccChhHHHHHHHHHHhCCCCCCCcchhh------hhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHH--HHHh
Q 010994 72 LRKRKRFSQALEVSDWMNRKGICVFAPCDHA------VQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLN--CYVR 143 (496)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~--~~~~ 143 (496)
+-+.+++.+|.++|..+-+... .+|..+. .++.++ -.++.+.-...+....+..|. ..|-.+.. .+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~--~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE--SSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQFGK-SAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--cchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 4567888999999888877541 2222222 122222 235566666666666665553 22333332 2456
Q ss_pred cCCHHHHHHHHHHHHHC--CCCC------------ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCC----CCChhhHH
Q 010994 144 QRQTDKALSHFRKMKEM--GIAL------------STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNI----FPDNFSYR 205 (496)
Q Consensus 144 ~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~ 205 (496)
.+++.+|++.+..-.++ +..| |...=+..+.++.+.|.+.++..+++++...=. .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888887766554 2221 112225667788889999999998888876533 25777787
Q ss_pred HHHHHHhh
Q 010994 206 ICINSYGA 213 (496)
Q Consensus 206 ~li~~~~~ 213 (496)
.++-.+++
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 76655554
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0013 Score=50.99 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
.-.+..-+...|++++|..+|+.+....+. +..-|-.|..++-..|++++|+..|......++. |+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 334455566778888888888887766422 4555667777777788888888888888777654 77778888888888
Q ss_pred cCChHHHHHHHHHHHH
Q 010994 390 AGKTERGFQCMKAALS 405 (496)
Q Consensus 390 ~~~~~~a~~~~~~~~~ 405 (496)
.|+.+.|.+.|+.++.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888888776
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0082 Score=50.20 Aligned_cols=129 Identities=9% Similarity=0.045 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH-----
Q 010994 276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII----- 350 (496)
Q Consensus 276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----- 350 (496)
+.++.++.-.|.+.-....+.+.....+..++.....+++.-.+.||.+.|...|+...+..-..|....+.++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 444444445555555555666555555445555555666666666666666666665554433333333333322
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233445566666666666655444 444445444444555666666666666654
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0018 Score=52.56 Aligned_cols=62 Identities=10% Similarity=-0.082 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcccC--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEERLEQK--DGIGYNFLISLYASLGNKSEVLRLWDLEKTA 301 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 301 (496)
|..+...+...|++++|...|++.......+ ...+|..+...+...|++++|+..++.....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444555555555555555544332111 1124555555555555555555555544443
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.036 Score=49.73 Aligned_cols=275 Identities=11% Similarity=-0.042 Sum_probs=151.3
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC
Q 010994 68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ 146 (496)
Q Consensus 68 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 146 (496)
.-..+.+..++..|+..+...++..+ -+...+...+..+...+++++|..-.++-.+.+| ........-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 33445667777888888888877652 2333344445556666777776665554444433 23333334444444444
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCChhhHHHHH-HHHhhcCChHHHHHHH
Q 010994 147 TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN-IFPDNFSYRICI-NSYGARSDLEGMEIIL 224 (496)
Q Consensus 147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li-~~~~~~~~~~~a~~~~ 224 (496)
..+|.+.++ |...| ....++..++...... -+|...+|..+- .++.-.|+.++|.+.-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444444443 11111 0111222222222211 123334444332 3555677777777765
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccc-------------hHHHHHHHHHhcCCHHHH
Q 010994 225 REMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI-------------GYNFLISLYASLGNKSEV 291 (496)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~a 291 (496)
-... +.+. .+......-..++.-.++.+.|...|++....++ +.. .|..-..-..+.|++..|
T Consensus 193 ~~il-kld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 193 IDIL-KLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHH-hccc-chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 5444 3322 2222222222344456777777777777554432 221 122223445789999999
Q ss_pred HHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHH--HHHHHhcCchhHHHHHH
Q 010994 292 LRLWDLEKTACK---RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR-IPNAV--IIGYCNNGLVQNAEAIL 365 (496)
Q Consensus 292 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~a~~~~ 365 (496)
.+.|.+.+...+ .++...|.....+..+.|+..+|..--+...+. |.. +...+ ..++.-.+++++|.+-|
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887665 445566777778888999999999988888765 221 11222 22334457788888888
Q ss_pred HHHHhcC
Q 010994 366 EDLVEKG 372 (496)
Q Consensus 366 ~~~~~~~ 372 (496)
+...+..
T Consensus 345 ~~a~q~~ 351 (486)
T KOG0550|consen 345 EKAMQLE 351 (486)
T ss_pred HHHHhhc
Confidence 8877653
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.004 Score=50.70 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKD--GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 316 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (496)
.+..+...+...|++++|...|++..+....++ ...+..+..++.+.|++++|...++......+ .+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 344455555556666666666665544332221 23455555666666666666666665555433 233444445555
Q ss_pred HHhcCCHHH
Q 010994 317 LMKLGEHEE 325 (496)
Q Consensus 317 ~~~~~~~~~ 325 (496)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555554433
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0036 Score=60.19 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=64.8
Q ss_pred cCccchHHHHHHHHHhc--C---CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC--------CHHHHHHHHHHHHh
Q 010994 269 QKDGIGYNFLISLYASL--G---NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG--------EHEEAEKVLKEWEL 335 (496)
Q Consensus 269 ~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 335 (496)
+.+...|...+++.... + +...|..+|++.....+ .....+..+..++.... +...+.+.......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 34555666666554322 1 24566666666665544 22333333322221110 11222222222222
Q ss_pred c-CCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 336 S-GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 336 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
. ....+...|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 112233445555444445566666666666666654 3555666666666666666666666666654
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.61 E-value=0.019 Score=51.11 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCC-CCcccHHHH
Q 010994 275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL-GEHEEAEKVLKEWELS----GNS-YDTRIPNAV 348 (496)
Q Consensus 275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 348 (496)
|...+..|...|++..|-+.+..+ ...|... |+++.|.+.|++..+. +.. .-...+..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 334445666777777766666533 3344444 6677777777666532 100 012344566
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCC-----CCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC--HHHH
Q 010994 349 IIGYCNNGLVQNAEAILEDLVEKGKA-----TTPN-SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD--PKVI 420 (496)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~ 420 (496)
...+.+.|++++|.++|++....... .+.. .|-..+-++...|+...|...+++.... ..++..+ ....
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~---~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ---DPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT---STTSTTSHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCcHHHHHH
Confidence 77788888999999999887764322 1121 2334455667788999999999887651 1233333 2456
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994 421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM 453 (496)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 453 (496)
..|+.++- .|+.+..........+..+.|...
T Consensus 239 ~~l~~A~~-~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 239 EDLLEAYE-EGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHH-TT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHcccCccHHHH
Confidence 66777664 345444444444444433445443
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.58 E-value=0.014 Score=48.87 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=32.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccC--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 010994 243 AAHFYIKANLIDKASDVLKKAEERLEQK--DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK 303 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 303 (496)
....+...|++++|...|+.+....+.. -....-.++.++.+.|+++.|...++......+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 4445556666666666666666543211 113344455666666666666666666665555
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00053 Score=45.24 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=33.4
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 349 IIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
...+.+.|++++|...|+++++..+. +...+..+...+...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666665533 555666666666666666666666666654
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.0021 Score=52.18 Aligned_cols=23 Identities=0% Similarity=-0.373 Sum_probs=9.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHh
Q 010994 205 RICINSYGARSDLEGMEIILREM 227 (496)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~~ 227 (496)
..+..++...|++++|+..++..
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333344444444444333
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00034 Score=46.74 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=28.1
Q ss_pred hhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010994 110 RVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEM 160 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (496)
+.|++++|+..|+.+....| +..++..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555555444 4555555666666666666666666665554
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.033 Score=44.12 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=79.9
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CCHhHHHHH
Q 010994 305 YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TTPNSWAVV 383 (496)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l 383 (496)
|....-..+..++...|+..+|...|++...--+..|....-.+..+....+++..|...++.+-+.++. -.+.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4445555566666677777777777766655434445555556666666667777777777666654311 012233455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
...+...|+..+|...|+.++. .-|+..........+.++|+.++|..-+..+.+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~-------~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS-------YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH-------hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6667777777777777777765 556665555555556666766665554444433
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00057 Score=45.60 Aligned_cols=51 Identities=18% Similarity=0.351 Sum_probs=25.2
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..|++++|..+|+++.+..+. +...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555544333 444444555555555555555555555543
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.031 Score=48.20 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994 278 LISLYASLGNKSEVLRLWDLEKTACKR--YINRDYITMLEALMKLGEHEEAEKVLKEW 333 (496)
Q Consensus 278 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 333 (496)
+...|.+.|.+..|..-++.+...-+. ........++.+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555554431 11233444555555555555555544433
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.45 E-value=0.00051 Score=45.99 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 010994 342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KTERGFQCMKAALS 405 (496)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 405 (496)
..+|..+...+...|++++|+..|.+.++.++. +...|..+..+|...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345566666667777777777777777766544 5566666777777776 57777777776665
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.44 E-value=0.078 Score=47.31 Aligned_cols=249 Identities=15% Similarity=0.065 Sum_probs=125.4
Q ss_pred hhcCHHHHHHHHHhchhcCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH
Q 010994 110 RVHGFLSAESYFSNLKDDEKTYQ--TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 187 (496)
-.|+++.|.+-|+.|... |... -...|.-.--+.|+.+.|..+-++.-..-. --...+...+...+..|+|+.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHH
Confidence 456666666666666652 2211 122233333455666666666665544421 134455666666666666666666
Q ss_pred HHHHHHHCC-CCCChhh--HHHHHHHHh---hcCChHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010994 188 VLTEMKAKN-IFPDNFS--YRICINSYG---ARSDLEGMEIILREME-SQPHIVLDWSTYASAAHFYIKANLIDKASDVL 260 (496)
Q Consensus 188 ~~~~m~~~~-~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 260 (496)
+.+.-+... +.++..- -..|+.+-. -..+...|...-.+.. -..++.|-... -...+.+.|+..++-.++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~---AAralf~d~~~rKg~~il 286 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVV---AARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHH---HHHHHHhccchhhhhhHH
Confidence 666555432 3333221 112222111 1123333433332222 12333333322 446677777777777777
Q ss_pred HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010994 261 KKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTA--CKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN 338 (496)
Q Consensus 261 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (496)
+.+.+..+.|+.. .+..+.+.|+ .++.-++..... -...+..+...+..+....|++..|..--+.....
T Consensus 287 E~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-- 358 (531)
T COG3898 287 ETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-- 358 (531)
T ss_pred HHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--
Confidence 7776665545432 1122233443 233323222111 11233455566666777777777776666555543
Q ss_pred CCCcccHHHHHHHHHh-cCchhHHHHHHHHHHhc
Q 010994 339 SYDTRIPNAVIIGYCN-NGLVQNAEAILEDLVEK 371 (496)
Q Consensus 339 ~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 371 (496)
.|....|..|.+.-.- .|+-.++..++.+....
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5666666666655443 37777777777776654
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0088 Score=51.45 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHhhhcCCCCCCC
Q 010994 340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALSVYVEGKGWKPD 416 (496)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p~ 416 (496)
-|...|-.|...|...|+++.|..-|.+..+.... |...+..+..++..+. ...++..++++++. .-+-|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~------~D~~~ 226 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALA------LDPAN 226 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh------cCCcc
Confidence 36666777777777777777777777766665332 4555555554444322 23456667777665 22334
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994 417 PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN 450 (496)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 450 (496)
......|...+...|++.+|...|+.|.+..|++
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 4555555566666777777777777666655444
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.0021 Score=57.16 Aligned_cols=135 Identities=14% Similarity=0.066 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHH----hcCC-CCCH
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWE----LSGNS-YDTRIPNAVIIGYCNNGLVQNAEAILEDLV----EKGK-ATTP 377 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~p~~ 377 (496)
..|..+...|.-.|+++.|....+.-. +-|-. .....+..+..++.-.|+++.|.+.|+.-. +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 445556666666677777766554322 11211 122345556666666777777777666533 2221 1233
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994 378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAA 442 (496)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (496)
.+.-+|...|.-..++++|+.++.+-+....+-....-....+.+|..++...|..++|..+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45556667777777777777777665441100011222345667777777777777777766653
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.054 Score=51.95 Aligned_cols=203 Identities=9% Similarity=0.034 Sum_probs=123.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCC--------ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC
Q 010994 163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK-NIFP--------DNFSYRICINSYGARSDLEGMEIILREMESQPHI 233 (496)
Q Consensus 163 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 233 (496)
.|.+..|..+.......-.++-|...|-+.... |++. +...-.+=+.+ -.|.+++|++++-++. .++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~d-rrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDAD-RRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccc-hhhh
Confidence 355666666666555555555555555444322 2211 00111111222 2478899999888886 4443
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc----cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchh
Q 010994 234 VLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD----GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD 309 (496)
Q Consensus 234 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 309 (496)
.|..+.+.|+|-...++++. .|...| ..+|+.+...+.....|++|.+.|..-..
T Consensus 766 ---------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 66778888888777766654 111111 25788889999998899999998874321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
....+.++.+..++++-+.+...+ +-+....-.+.+++.+.|.-++|.+.|-+-.. | ..-+..|..
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVE 890 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHH
Confidence 123566777777776666555444 33555667788888888888888876643322 1 234566777
Q ss_pred cCChHHHHHHHHHH
Q 010994 390 AGKTERGFQCMKAA 403 (496)
Q Consensus 390 ~~~~~~a~~~~~~~ 403 (496)
.++|.+|.++-++.
T Consensus 891 LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777766653
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0025 Score=56.73 Aligned_cols=134 Identities=12% Similarity=-0.048 Sum_probs=91.8
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHH----HhcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDL----VEKGKA-TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP 417 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~ 417 (496)
..|..|...|--.|+++.|+...+.- .+.|-+ .....+..+..++.-.|+++.|.+.|+..+...++-..-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666677777788999988765432 233311 1234678899999999999999999998776332222233345
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALRT------VIPMNRQMYHAFIKANIRNG--KGVDELLDSMK 476 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 476 (496)
.+..+|.+.|.-..+++.|+.++.+-.. ...-....+.+|..+|...| +.|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6777888888888899999998873221 12234567888999999988 67776655544
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.37 E-value=0.015 Score=45.79 Aligned_cols=77 Identities=10% Similarity=0.151 Sum_probs=54.1
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT 421 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (496)
....++..+...|+++.|..+.+.+....+- |...|..++.+|...|+...|.+.|+++.....+..|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3455667777888888888888888887655 7778888888888888888888888888776666678888876543
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.026 Score=44.75 Aligned_cols=95 Identities=9% Similarity=-0.076 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHh
Q 010994 241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-RYINRDYITMLEALMK 319 (496)
Q Consensus 241 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 319 (496)
..|...+.+.|+..+|...|.+.......-|....-.+.++....+++..|...++...+..+ .-++.+...+.+.+..
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence 334444444444444444444444322223333333444444444444444444443333322 1111223333444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 010994 320 LGEHEEAEKVLKEWEL 335 (496)
Q Consensus 320 ~~~~~~a~~~~~~~~~ 335 (496)
.|+...|+..|+....
T Consensus 173 ~g~~a~Aesafe~a~~ 188 (251)
T COG4700 173 QGKYADAESAFEVAIS 188 (251)
T ss_pred cCCchhHHHHHHHHHH
Confidence 4444444444444443
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.35 E-value=0.0097 Score=56.23 Aligned_cols=214 Identities=13% Similarity=0.141 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHH---------HHHHHHCCCCCChhHHHHHHHHHHhcCCCC--cHHHHHHHHHHCCCCCCh
Q 010994 133 TYGALLNCYVRQRQTDKALSH---------FRKMKEMGIALSTLTYNDIMCLYSKTGQYE--KVPDVLTEMKAKNIFPDN 201 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~ 201 (496)
.+.+=+-.|...|.+++|..+ |+.+... ..+...++..=.+|.+..+.. +...-+++++++|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 344444556666666666543 1111111 012223344444555444332 333345677777877876
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---------H-HhcccCc
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA---------E-ERLEQKD 271 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m---------~-~~~~~~~ 271 (496)
.. +...++-.|++.+|-++|.+-- ..+ ..+..|.....+|.|.+++..- . ......+
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~G-~en---------RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRSG-HEN---------RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHcC-chh---------hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 53 4455667788888888887654 211 1333444444444444443220 0 0000111
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHH------HHHhhc---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994 272 GIGYNFLISLYASLGNKSEVLRLWD------LEKTAC---KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT 342 (496)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (496)
..--.+....+...|+.++|..+.- .+...+ ...+..+...+...+.+...+..|.++|..|-+.
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 1111233444555666666655432 111111 1223344444444455566677777777766432
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
..+++.....+++++|..+-++..+
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCcc
Confidence 3566677777788887777666554
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.0038 Score=49.25 Aligned_cols=120 Identities=12% Similarity=0.065 Sum_probs=65.5
Q ss_pred HHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHH
Q 010994 71 DLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKA 150 (496)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 150 (496)
.....++.+.+.+.++.+...-..++-+.... ..-.......+.... ..+...++..+...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~-----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY-----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH-----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccCHHHH
Confidence 34566788889999888887532111111111 000111111111111 23455667777778888888
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH-----CCCCCChhhH
Q 010994 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA-----KNIFPDNFSY 204 (496)
Q Consensus 151 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 204 (496)
..+.+.+..... -|...|..+|.++...|+...|.+.|+++.+ .|+.|+..+-
T Consensus 82 ~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 82 LRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 888887776633 3677788888888888888888888777643 3777776653
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.0012 Score=43.45 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=44.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994 383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN 450 (496)
Q Consensus 383 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 450 (496)
+...+...|++++|...|+++++ ..| +...+..+..++...|++++|...|+++.+..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~-------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK-------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC-------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45667788888888888888876 334 45677778888888888888888888777655543
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0018 Score=52.74 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHhc-----CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHH
Q 010994 165 STLTYNDIMCLYSKT-----GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWST 239 (496)
Q Consensus 165 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 239 (496)
|..+|..+++.|.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~------------- 110 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA------------- 110 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-------------
Confidence 677777777776644 4555566677888888998899999998888764 2221 0111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG 286 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 286 (496)
+...| -.+.+-|++++++|...|+-||..++..+++.+++.+
T Consensus 111 ---~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 111 ---EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 11111 1234556777777777777777777777777765554
No 200
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.32 E-value=0.02 Score=55.24 Aligned_cols=139 Identities=13% Similarity=0.069 Sum_probs=94.7
Q ss_pred CCCchhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhc--------CchhHHHHHHHHHH
Q 010994 304 RYINRDYITMLEALMKL-----GEHEEAEKVLKEWELSGNSYDT-RIPNAVIIGYCNN--------GLVQNAEAILEDLV 369 (496)
Q Consensus 304 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 369 (496)
..+...|...+++.... ++...|..+|++..+. .|+- ..+..+..++... ++...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35667788887775432 2377899999999887 4443 3444433333222 12334444444433
Q ss_pred hc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 370 EK-GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 370 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
.. ....+...|..+.......|++++|...+++++. +.|+...|..+...+...|+.++|...+++.....|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 32 1223557788887777788999999999999987 568888899999999999999999999998877544
Q ss_pred CCH
Q 010994 449 MNR 451 (496)
Q Consensus 449 ~~~ 451 (496)
.++
T Consensus 485 ~~p 487 (517)
T PRK10153 485 GEN 487 (517)
T ss_pred CCc
Confidence 433
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.015 Score=50.11 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=79.6
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---CchhHHHHHHHHHHhc
Q 010994 295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN---GLVQNAEAILEDLVEK 371 (496)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 371 (496)
++.-....+ .|...|..|..+|...|+.+.|..-|....+.. .+++..+..+..++... ....++..+|+++...
T Consensus 145 Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 333334444 677888888888888888888888888887763 33555566666555433 2356788888888887
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 372 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+.. |..+...+...+...|++.+|...|+.|+.
T Consensus 223 D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 223 DPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred CCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 765 777888888888889999999999998886
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.29 E-value=0.011 Score=51.43 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
|...+..+.+.|++++|...|+.+++..+... ...+--+...|...|++++|...|+.++..+ .+-+.....+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHHHHH
Confidence 44444444556777777777777776543211 2355566677777777777777777776511 111112334444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNR 451 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 451 (496)
+...+...|+.++|..+++.+.+..|.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55566677777777777777766555444
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.029 Score=41.92 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455566666666666555554422 22344455555556666666666665554
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.21 E-value=0.099 Score=43.83 Aligned_cols=167 Identities=11% Similarity=0.005 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994 275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYI--NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY 352 (496)
Q Consensus 275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (496)
+-.....+...|++++|...|+.+....+... ......++.++.+.|+++.|...++...+.-+.....-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445567788999999999998887765322 2445677888889999999999999988763322222223233332
Q ss_pred HhcC-------------chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 010994 353 CNNG-------------LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKV 419 (496)
Q Consensus 353 ~~~g-------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 419 (496)
+... ...+|... +..++.-|-......+|...+..+.. .+ ...
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~------~l---a~~ 143 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRN------RL---AEH 143 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHH------HH---HHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHH------HH---HHH
Confidence 2111 12223333 34444444444555555554444433 00 011
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhCC
Q 010994 420 ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQ---MYHAFIKANIRNG 465 (496)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 465 (496)
-..+...|.+.|.+..|..-++.+.+..|.+.. ....++.+|.+.|
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 123556688888888888888888887666553 4667777888887
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.20 E-value=0.0019 Score=43.13 Aligned_cols=64 Identities=13% Similarity=0.244 Sum_probs=53.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccC-CHHHHHHHHHHHHhc
Q 010994 376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEG-SVQDVEAFVAALRTV 446 (496)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 446 (496)
++.+|..+...+...|++++|+..|.++++ +.|+ ...+..+..++...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567888999999999999999999999998 4554 567888888899998 799999999877653
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.031 Score=41.80 Aligned_cols=89 Identities=22% Similarity=0.213 Sum_probs=37.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcC
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYD--TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA--TTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~ 391 (496)
++-..|+.++|..+|++....|.... ...+-.+...+...|++++|..++++.....+. .+......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34444555555555555554443322 122333444444555555555555554443211 01111122223444455
Q ss_pred ChHHHHHHHHHHH
Q 010994 392 KTERGFQCMKAAL 404 (496)
Q Consensus 392 ~~~~a~~~~~~~~ 404 (496)
+.++|+..+-..+
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.11 Score=43.75 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH-----H
Q 010994 241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML-----E 315 (496)
Q Consensus 241 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 315 (496)
+.++.++...|.+.-....+++..+..++.++.....+++.-.+.|+.+.|...|+...+...+.+..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34455555555555555555555555544555555556666666666666666666444444434444433332 2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (496)
.+.-.+++..|...+.++..... .|+...|.-.-+..-.|+...|++.++.|.+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred heecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 23345566666666666665432 233333333333333567777777777777654
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.18 Score=45.18 Aligned_cols=281 Identities=14% Similarity=0.023 Sum_probs=161.7
Q ss_pred HhhcCHHHHHHHHHhchhc-CCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCChhHH----HHHHHHHHhcCC
Q 010994 109 GRVHGFLSAESYFSNLKDD-EKTYQTYGALL--NCYVRQRQTDKALSHFRKMKEMGIALSTLTY----NDIMCLYSKTGQ 181 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~~~ 181 (496)
...|+-..|.++-.+.... ..|....-.|+ ..-.-.|+++.|.+-|+.|.. |+.+- ..|.-..-+.|+
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc
Confidence 3456667776666554422 12322222222 333456888889888888876 33332 333333456677
Q ss_pred CCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHH--HHHHHHHHh---cCChHHH
Q 010994 182 YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTY--ASAAHFYIK---ANLIDKA 256 (496)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~---~~~~~~a 256 (496)
.+.|..+-++.-..-. .-...+...+...|..|+++.|+++++.-....-+.++..-- ..|+.+-.. ..+...|
T Consensus 170 reaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 7778777777655422 134667778888888899999888887766333344443221 122222111 2344455
Q ss_pred HHHHHHHHHhcccCccchH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 257 SDVLKKAEERLEQKDGIGY-NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 257 ~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
...-.+.. ...||...- ..-..++.+.|+..++-.+++.+-+..+.|+. ..+....+.|+. +..-++...+
T Consensus 249 r~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCc--HHHHHHHHHH
Confidence 55444432 234554332 23356788888888888888887777665543 122233445543 3333332221
Q ss_pred c-CCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010994 336 S-GNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA-GKTERGFQCMKAALS 405 (496)
Q Consensus 336 ~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 405 (496)
. ..+| +....-.+..+-...|++..|..--+..... .|....|..|...-... |+-.++.+.+.+.+.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 1223 4445556667777788888777666655543 46667777776665544 888888888888877
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0042 Score=42.03 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=33.6
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..|.+.+++++|.++++.+...++. +...|......+...|++++|.+.++++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455666666666666666665444 555566666666666666666666666655
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.03 E-value=0.012 Score=51.10 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCC-CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC----HHHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT----YQTYGALL 138 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~li 138 (496)
.|...+..+.+.|++++|+..|+.+.+..+.. ..++.+..+...+...|++++|...|..+....|+ ...+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 45555555556677777777777777765211 12344555556666666666666666666554442 33444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 010994 139 NCYVRQRQTDKALSHFRKMKEM 160 (496)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~ 160 (496)
..+...|+.++|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555666666666666666554
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.02 E-value=0.24 Score=44.59 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 010994 276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN 355 (496)
Q Consensus 276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (496)
+..+.-+...|+...|.++-.+. ..|+..-|...+.+++..+++++-..+... +-.+..|..++..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 33344444445444444433211 224444455555555555555544443221 11234455555555555
Q ss_pred CchhHHHHHHHH
Q 010994 356 GLVQNAEAILED 367 (496)
Q Consensus 356 g~~~~a~~~~~~ 367 (496)
|+..+|..+..+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555544433
No 212
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.91 E-value=0.0087 Score=50.59 Aligned_cols=99 Identities=17% Similarity=0.304 Sum_probs=69.3
Q ss_pred HHHHHhchhcCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC-----------
Q 010994 118 ESYFSNLKDDEKTYQTYGALLNCYVRQ-----RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ----------- 181 (496)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~----------- 181 (496)
+..|..+...+.|-.+|-..+..+... +.++-....+..|.+-|+..|..+|+.|++.+=+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 345555555556777888888777654 5667777778889999999999999999987654321
Q ss_pred -----CCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 182 -----YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 182 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
-+=++.++++|..+|+.||..+-..+++++++.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12356667777777777777777777777766554
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.84 E-value=0.0043 Score=42.69 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994 378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW-KPD-PKVITSILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
.+|+.+...|...|++++|+..|+++++. .+..|- .|+ ..++..+..++...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777777777777777777763 111121 122 3456666667777777777777776544
No 214
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.081 Score=44.04 Aligned_cols=209 Identities=12% Similarity=0.093 Sum_probs=102.8
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHH
Q 010994 62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCY 141 (496)
Q Consensus 62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 141 (496)
...|..-..+|...+++++|...+....+-.. .+...+ -....++.|.-+.+++....--+..|+.....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yE--nnrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566777778888888888887777664221 111111 112223444444444433222244566667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC---C--CCCChhhHHHHHHHHhhcCC
Q 010994 142 VRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK---N--IFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~--~~p~~~~~~~li~~~~~~~~ 216 (496)
..+|..+.|-..+++.-+. .++.++++|+++|++...- + .+.-...+..+-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888877777776664332 1223344444444433221 0 00011123334445555556
Q ss_pred hHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---cccCccchHHHHHHHHHhcCCHH
Q 010994 217 LEGMEIILREME----SQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER---LEQKDGIGYNFLISLYASLGNKS 289 (496)
Q Consensus 217 ~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~ 289 (496)
+++|-..+.+-. .-.....-...|...|-.|....++..|...++.-.+. .-..+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 665554443322 00111011123444555566666777777777663222 1123445566666655 456666
Q ss_pred HHHHHHH
Q 010994 290 EVLRLWD 296 (496)
Q Consensus 290 ~a~~~~~ 296 (496)
++.+++.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 6655543
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.63 Score=45.53 Aligned_cols=341 Identities=12% Similarity=0.092 Sum_probs=186.4
Q ss_pred CCCCChhhHHH-----HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc---CHHHHHHHHHhchhcC
Q 010994 57 GNKVRVGELQR-----IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH---GFLSAESYFSNLKDDE 128 (496)
Q Consensus 57 ~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~ 128 (496)
|++.+..-|.. +|+.+...+.|..|+++-.++..... .....+......+.+.. +-+.+..+-+++...-
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 77777776654 57888888999999999888865431 12344444455444432 2222223322332211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhH
Q 010994 129 KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIA----LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSY 204 (496)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 204 (496)
....+|..+.......|+++-|..+++.=.+.+.. .+..-+...+.-+.+.|+.+-...++-.+... .+...|
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 23566777888888899999999887653222211 12333455666677788888877777776653 111222
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-H-HH-hcccCccchHHHHHHH
Q 010994 205 RICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK-A-EE-RLEQKDGIGYNFLISL 281 (496)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m-~~-~~~~~~~~~~~~l~~~ 281 (496)
... ..+...|..+|.+..++.+- .+ +-..|-. ++-.++...|.. - .. ..+.+-..........
T Consensus 582 ~~~------l~~~p~a~~lY~~~~r~~~~----~~---l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 582 FMT------LRNQPLALSLYRQFMRHQDR----AT---LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHH------HHhchhhhHHHHHHHHhhch----hh---hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 222 22345566666655522221 11 2222222 222222222211 0 00 0011111122223333
Q ss_pred HHhcCCH----------HHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994 282 YASLGNK----------SEVLRLWDLEKTA-CKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII 350 (496)
Q Consensus 282 ~~~~~~~----------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (496)
+.+.... ..-+++.+..... +..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 3333221 1111222222111 112233455566667777888888888776653 468888888888
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE 430 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 430 (496)
+++..+++++-+++-+... .+.-|.-+..+|.+.|+.++|.+++-+.- |. . -...+|.+.
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-------~l---~----ekv~ay~~~ 783 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-------GL---Q----EKVKAYLRV 783 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-------Ch---H----HHHHHHHHh
Confidence 8888888887666544332 24567778888888898888888886642 22 1 456677888
Q ss_pred CCHHHHHHHH
Q 010994 431 GSVQDVEAFV 440 (496)
Q Consensus 431 g~~~~a~~~~ 440 (496)
|++.+|.+.-
T Consensus 784 ~~~~eAad~A 793 (829)
T KOG2280|consen 784 GDVKEAADLA 793 (829)
T ss_pred ccHHHHHHHH
Confidence 8888877653
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.43 Score=42.97 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY 387 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 387 (496)
.+.+..+.-+...|+...|.++-.+.. -|+...|-..+.+|+..++|++-.++-.. + -.+.-|..++..|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 456666777888999988888876652 47889999999999999999988776432 1 1457899999999
Q ss_pred HhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010994 388 FDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL 443 (496)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 443 (496)
.+.|+..+|..+..++ ++ ..-+..|.++|++.+|.+.-.+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999998888762 11 34566788899999998765443
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.54 Score=42.85 Aligned_cols=174 Identities=17% Similarity=0.069 Sum_probs=85.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994 204 YRICINSYGARSDLEGMEIILREMESQPH--IVLDWSTYASAAHFYIK---ANLIDKASDVLKKAEERLEQKDGIGYNFL 278 (496)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 278 (496)
...++-+|....+++...++++.+..-.. +.-....-....-++.+ .|+.++|.+++..+......+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33455567777777777777777762111 11122222234445555 67777777777775444445666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc-
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL- 357 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 357 (496)
...|-.. |. ..+. .+.. ..++|...|.+.-+. .||...--.+...+.-.|.
T Consensus 224 GRIyKD~---------~~---~s~~-~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 224 GRIYKDL---------FL---ESNF-TDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHH---------HH---HcCc-cchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCc
Confidence 6655321 10 0000 1111 145555555544433 2333222222222222222
Q ss_pred hh---HHHHHH---HH-HHhcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 358 VQ---NAEAIL---ED-LVEKG---KATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 358 ~~---~a~~~~---~~-~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+ +..++- .. +.++| ...|.-.+.+++.++.-.|+.++|.+.+++|..
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 11 111111 11 11222 223555666777777778888888888888876
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.60 E-value=0.044 Score=41.42 Aligned_cols=54 Identities=13% Similarity=0.318 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhC
Q 010994 411 KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV--IPMNRQMYHAFIKANIRN 464 (496)
Q Consensus 411 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 464 (496)
....|+..+..+++.+|+..|++..|.++.+.+.+. .+.+...|..|+.-....
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 457788888888888888888888888888877774 555677888887655443
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.60 E-value=0.038 Score=41.79 Aligned_cols=52 Identities=8% Similarity=-0.114 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-cccCccchHHHHHHHH
Q 010994 231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER-LEQKDGIGYNFLISLY 282 (496)
Q Consensus 231 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~ 282 (496)
....|+..+..+++.+|+..+++..|+++.+.+.+. +++.+..+|..|++-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344566666667777777777777777777666443 3334455666666544
No 220
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.08 Score=41.51 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=78.4
Q ss_pred CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHH--
Q 010994 60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGAL-- 137 (496)
Q Consensus 60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l-- 137 (496)
-+...|..-+. +.+.+..++|+.-|.++.+.|.-....-.......+..+.|+...|...|+++....|.+....-+
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34444544444 456777888888888888877422222233334556667777777777777776654333322111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC
Q 010994 138 ---LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN 196 (496)
Q Consensus 138 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (496)
.-.+..+|.++....-.+.+-..|-+.-...-..|.-+-.+.|++.+|.+.|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12244566677666666665544433334444555556666677777777776666543
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.48 E-value=0.015 Score=39.33 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=42.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994 384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR 451 (496)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 451 (496)
-..|.+.+++++|.+++++++. ..| +...+......+.+.|++++|.+.|+...+..|.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~-------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE-------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3567777888888888888876 334 445566667777778888888888877766554443
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.47 E-value=0.23 Score=46.02 Aligned_cols=144 Identities=9% Similarity=-0.050 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHh-cCCCCCc-ccHHHHHHHHH---------hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994 323 HEEAEKVLKEWEL-SGNSYDT-RIPNAVIIGYC---------NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 323 ~~~a~~~~~~~~~-~~~~~~~-~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 391 (496)
.+.|..+|.+... +...|+- ..|..+..++. ......+|.++-++..+.+.. |+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 4566677777762 1223332 22333322222 123456777888888888766 8888888888888888
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCC-Cc
Q 010994 392 KTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVIPM--NRQMYHAFIKANIRNG-KG 467 (496)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g-~~ 467 (496)
+++.|...|+++.. +.||. .+|......+.-.|+.++|.+.+++..+..|. -..+....++.|+.++ ++
T Consensus 353 ~~~~a~~~f~rA~~-------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
T PRK11906 353 QAKVSHILFEQAKI-------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKN 425 (458)
T ss_pred chhhHHHHHHHHhh-------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhh
Confidence 89999999999976 77875 46666666677789999999999986665433 3345666677899999 88
Q ss_pred HHHHHHH
Q 010994 468 VDELLDS 474 (496)
Q Consensus 468 a~~~~~~ 474 (496)
|+.++.+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 9888754
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.45 E-value=0.38 Score=46.10 Aligned_cols=196 Identities=12% Similarity=0.105 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHH-----HHHHHHHhcCCHHHHHHHH
Q 010994 80 QALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYG-----ALLNCYVRQRQTDKALSHF 154 (496)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~ 154 (496)
+.+.-++++.+++ -.|+. ..+...++-.|++.+|-++|.+--....-...|+ -+..-+...|..++-..+.
T Consensus 618 ~li~EL~~~k~rg---e~P~~-iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 618 ELISELEERKKRG---ETPND-LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HHHHHHHHHHhcC---CCchH-HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 3344455566655 22332 2345677778888888888876443222122221 1233344444444433333
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHH------HHHCCC---CCChhhHHHHHHHHhhcCChHHHHHHHH
Q 010994 155 RKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE------MKAKNI---FPDNFSYRICINSYGARSDLEGMEIILR 225 (496)
Q Consensus 155 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~ 225 (496)
+.-.+. ..|..--.+....+...|+.++|..+.-+ +.+-+- ..+..+...+..-+-+...+..|-++|.
T Consensus 694 RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 694 RKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 221110 00111112344555566777777655321 111111 1223344444444455566667777777
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994 226 EMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW 295 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 295 (496)
.|- + ...++......++|++|..+-+.. ++.-..+|..-.+.++...++++|.+.|
T Consensus 772 k~g-D---------~ksiVqlHve~~~W~eAFalAe~h----Pe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 772 KMG-D---------LKSLVQLHVETQRWDEAFALAEKH----PEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred Hhc-c---------HHHHhhheeecccchHhHhhhhhC----ccccccccchHHHHhhhhhhHHHHHHHH
Confidence 774 2 123666777788888888777663 2222233444444445555555554433
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.44 E-value=0.036 Score=52.20 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHh
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR 143 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 143 (496)
..+.++..+-+.|.++.|+.+..+- ...+++..+.|+++.|.+..++.. +...|..|.+...+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~-------------~~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP-------------DHRFELALQLGNLDIALEIAKELD----DPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H-------------HHHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh-------------HHHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHH
Confidence 3455555555555555555553222 122345555555555555433322 34555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 010994 144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEII 223 (496)
Q Consensus 144 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 223 (496)
.|+++-|.+.|.+..+ |..|+-.|.-.|+.++..++.+.....|- ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 5666555555554332 33444445555555554444444444321 33444444444555555444
Q ss_pred HHH
Q 010994 224 LRE 226 (496)
Q Consensus 224 ~~~ 226 (496)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 225
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=1.2 Score=44.37 Aligned_cols=179 Identities=12% Similarity=0.137 Sum_probs=117.7
Q ss_pred ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhh----hHHHhhcCHHHHHHHHHhchhc-CCCHHHHH
Q 010994 61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQL----DLIGRVHGFLSAESYFSNLKDD-EKTYQTYG 135 (496)
Q Consensus 61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 135 (496)
.......-+..+.+...++-|+.+-+. .+ .+++....+. +.+.+.|++++|...+-+.... +|.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s----- 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS---QH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS----- 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----
Confidence 444567778888888888888877543 22 3455555443 4445789999998877654432 332
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS 215 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 215 (496)
.+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 3556666777777788888888888887 77777888999999998888766655443 2211 112445667777777
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
-+++|.-+-.+.. . +... +-..+-..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~-~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFK-K-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhc-c-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 7777777665554 1 1222 333345567888888888765
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.39 E-value=0.51 Score=40.06 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=44.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994 382 VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN 450 (496)
Q Consensus 382 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 450 (496)
.+..-|.+.|.+..|..-++++++.+ ...+-....+-.+..+|...|-.++|...-+-+....|.+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y---~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENY---PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 34567888888888888888888721 1111112455666778888888888888877666644433
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.084 Score=45.03 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCCC-CCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC----HHHHHHHH
Q 010994 64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGI-CVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT----YQTYGALL 138 (496)
Q Consensus 64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~li 138 (496)
.|+.-+..+ +.|++..|...|...++..+ .+..++.+-.+.+.+...|+++.|...|..+....|+ +..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577777655 77779999999999998763 2356677777788888888888888888888776542 56777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 010994 139 NCYVRQRQTDKALSHFRKMKEM 160 (496)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~ 160 (496)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888888776
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.36 E-value=0.82 Score=42.08 Aligned_cols=405 Identities=11% Similarity=0.073 Sum_probs=190.3
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhc----C------------C
Q 010994 66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD----E------------K 129 (496)
Q Consensus 66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~------------~ 129 (496)
+.++++|.-. +.+.....+....+.. +.++-......-.+-+.+.++.|.+.+..=.+. . +
T Consensus 50 grilnAffl~-nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 50 GRILNAFFLN-NLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred hHHHHHHHHh-hHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 4555655433 3444444444444433 122222222333444677788877766543222 1 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhHHHHHHHHHHhc--------CCCCcHHHHHHH------
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEM----GIALSTLTYNDIMCLYSKT--------GQYEKVPDVLTE------ 191 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~------ 191 (496)
|...-+..++++.+.|++.++..+++++..+ ...-+..+|+.++-.+.++ ...+-.-+.|+.
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 2233366778889999999999888887554 3336888888765554432 122222222222
Q ss_pred -HHHC------CCCCChhhHHHHHHHHhhc--CChHHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHH
Q 010994 192 -MKAK------NIFPDNFSYRICINSYGAR--SDLEGMEIILREMESQPHIVLDWST-YASAAHFYIKANLIDKASDVLK 261 (496)
Q Consensus 192 -m~~~------~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~ 261 (496)
|... .+-|...-...++....-. .++.--.++++... ..-+.|+... ...+..-+.+ +.+++..+.+
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce 283 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCE 283 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHH
Confidence 2111 1223322223333222211 12222233333333 3333454322 1223333333 5666666665
Q ss_pred HHHHhccc----CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchh-----HHHHHHHHH-hc---CCHHHHHH
Q 010994 262 KAEERLEQ----KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD-----YITMLEALM-KL---GEHEEAEK 328 (496)
Q Consensus 262 ~m~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~-~~---~~~~~a~~ 328 (496)
.+....+. .=..++..++....+.++...|.+.+.....-.+...... -..+-+..+ .. -+...-..
T Consensus 284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~ 363 (549)
T PF07079_consen 284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN 363 (549)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH
Confidence 55433211 1235688888888888998888888885544333211110 111112222 11 11222233
Q ss_pred HHHHHHhcCCCCCcccHHHHHHH---HHhcCc-hhHHHHHHHHHHhcCCCCCHhHHHH----HHHHHHhc---CChHHHH
Q 010994 329 VLKEWELSGNSYDTRIPNAVIIG---YCNNGL-VQNAEAILEDLVEKGKATTPNSWAV----VAAGYFDA---GKTERGF 397 (496)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~---~~~~~a~ 397 (496)
+++.+...++. ......-++.+ +-+.|. -++|+.+++.+.+-..- |..+-|. +=..|.+. .....-+
T Consensus 364 lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 364 LWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33333332211 11111222222 334444 66677777776653211 3322222 22233322 2223333
Q ss_pred HHHHHHHHhhhcCCCCCCCH----HHHHHHHHH--HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHH
Q 010994 398 QCMKAALSVYVEGKGWKPDP----KVITSILSK--LGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVD 469 (496)
Q Consensus 398 ~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~ 469 (496)
.+-+-.. +.|++|-. ..-+.+..| +..+|++.++.-.-..+.+ +.|++.+|..++-++..+. ++|.
T Consensus 442 kLe~fi~-----e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~-iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 442 KLEDFIT-----EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK-IAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHH-----hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 3222222 35666543 233333332 4556777777665555544 4457777777776666665 6777
Q ss_pred HHHHHHHhCCCCCChhHHHH
Q 010994 470 ELLDSMKADGIDEDEETKEI 489 (496)
Q Consensus 470 ~~~~~m~~~g~~p~~~t~~~ 489 (496)
+++.. ++|+..+++.
T Consensus 516 ~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 516 EYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHh-----CCCchhhHHH
Confidence 77766 4556555543
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=96.36 E-value=0.071 Score=41.83 Aligned_cols=84 Identities=10% Similarity=-0.074 Sum_probs=32.2
Q ss_pred hcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 010994 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEK 328 (496)
Q Consensus 249 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (496)
..|++++|..+|.-+....+ .+..-|..|..++-..+++++|+..|........ .|+..+.-...++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 34444444444444333221 2222333334444444444444444443222221 222233333444444444444444
Q ss_pred HHHHHH
Q 010994 329 VLKEWE 334 (496)
Q Consensus 329 ~~~~~~ 334 (496)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 444443
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.34 E-value=0.29 Score=38.11 Aligned_cols=125 Identities=10% Similarity=0.098 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 010994 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGAR 214 (496)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 214 (496)
..++..+...+.......+++.+...|. .+...++.++..|++.+ ..+..+.+.. .++......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4566777777788888888888777663 57777888888887653 2233333331 12334445567777777
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcccCccchHHHHHHHHH
Q 010994 215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA-NLIDKASDVLKKAEERLEQKDGIGYNFLISLYA 283 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 283 (496)
+-++++.-++.++. . +...+..+... ++++.|.+++.+ ..+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 77777777776664 1 22233334444 667777776665 234456666665554
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.33 E-value=0.81 Score=41.76 Aligned_cols=167 Identities=16% Similarity=0.029 Sum_probs=82.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC--C-CchhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994 278 LISLYASLGNKSEVLRLWDLEKTACKR--Y-INRDYITMLEALMK---LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351 (496)
Q Consensus 278 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (496)
++-+|....+++..+++.+.+...... + ....-....-++.+ .|+.++|.+++..+......+++.+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333455555555555555544333110 0 11111122333344 55666666666554444344555555555544
Q ss_pred HHh---------cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh-H---HHHHHH---HHHHHhhhcCCC---
Q 010994 352 YCN---------NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT-E---RGFQCM---KAALSVYVEGKG--- 412 (496)
Q Consensus 352 ~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~---~a~~~~---~~~~~~~~~~~~--- 412 (496)
|-. ....++|...|.+.-+.. ||..+=-.++..+...|.. + +..++- ..... +.|
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg----~kg~~~ 300 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG----RKGSLE 300 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH----hhcccc
Confidence 432 123677787777766543 4443322222233333322 1 111211 11111 122
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994 413 WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN 450 (496)
Q Consensus 413 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 450 (496)
-..+.-.+.+++.++.-.|+.++|.+..+.+....+|.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 22344566778888888999999999999888765443
No 232
>PRK15331 chaperone protein SicA; Provisional
Probab=96.33 E-value=0.12 Score=40.58 Aligned_cols=86 Identities=12% Similarity=-0.002 Sum_probs=40.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 397 (496)
...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 3445555555555554443221 2333344444444455555555555544433322 3333444455555555555555
Q ss_pred HHHHHHHH
Q 010994 398 QCMKAALS 405 (496)
Q Consensus 398 ~~~~~~~~ 405 (496)
..|..++.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555543
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.32 E-value=0.018 Score=39.51 Aligned_cols=62 Identities=26% Similarity=0.287 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh----cc-cCc-cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 238 STYASAAHFYIKANLIDKASDVLKKAEER----LE-QKD-GIGYNFLISLYASLGNKSEVLRLWDLEK 299 (496)
Q Consensus 238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 299 (496)
.+|+.+...|...|++++|+..|++..+. |. .|+ ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566666677777777777777665432 10 111 3456666666677777777777666543
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.15 E-value=0.16 Score=48.03 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 210 (496)
....+.++..+-+.|-.+.|+.+.+.-.. -.....+.|+.+.|.++.++ .++...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 34456666666666777776666433221 23444556666666555332 2255567777777
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994 211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290 (496)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (496)
..+.|+++-|++.|.+.. + +..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++
T Consensus 357 AL~~g~~~lAe~c~~k~~-d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK-D---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEE 420 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHhhc-C---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHH
Confidence 777777777777776664 1 44466666666776666666555444332 4444555555666666
Q ss_pred HHHHHH
Q 010994 291 VLRLWD 296 (496)
Q Consensus 291 a~~~~~ 296 (496)
..+++.
T Consensus 421 cv~lL~ 426 (443)
T PF04053_consen 421 CVDLLI 426 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.11 E-value=2.1 Score=44.45 Aligned_cols=331 Identities=14% Similarity=0.103 Sum_probs=162.5
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCC--CCCCcchhhhhhhHHH-hhcCHHHHHHHHHhchhcCCCHHHHHHHH---
Q 010994 65 LQRIIRDLRKRKRFSQALEVSDWMNRKGI--CVFAPCDHAVQLDLIG-RVHGFLSAESYFSNLKDDEKTYQTYGALL--- 138 (496)
Q Consensus 65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~li--- 138 (496)
.-.-++.+++.+++.+|.++.+.-.-.-. ....|..+...+.++. ..++.+--..++..+.+.+.+...|....
T Consensus 680 VLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~ 759 (1265)
T KOG1920|consen 680 VLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSG 759 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcccccccc
Confidence 34556667778888887766554332211 1123444544454444 34555555555555554433322222211
Q ss_pred -HHHHhc----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC--CCCcHHHHHHHHHHCCCCCChhh--------
Q 010994 139 -NCYVRQ----RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG--QYEKVPDVLTEMKAKNIFPDNFS-------- 203 (496)
Q Consensus 139 -~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~-------- 203 (496)
..|... ..++...+.+.....+ ..|+ .-.-.++.+|.+.+ ..+.++....+.......++...
T Consensus 760 k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~L 837 (1265)
T KOG1920|consen 760 KQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFL 837 (1265)
T ss_pred ceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhh
Confidence 112111 2233444444443333 2445 44456777777776 55666666655553211111110
Q ss_pred --HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-------------hcCChHHHHHHHHHHHHhcc
Q 010994 204 --YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYI-------------KANLIDKASDVLKKAEERLE 268 (496)
Q Consensus 204 --~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~~~ 268 (496)
-+.+.++....=|++-|..+-+.-+ -|+.-|-.+++-+- ..++++.|+.-+.++
T Consensus 838 vdvn~lfn~ALgtYDl~Lal~VAq~Sq------kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~----- 906 (1265)
T KOG1920|consen 838 VDVNELFNSALGTYDLDLALLVAQKSQ------KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC----- 906 (1265)
T ss_pred ccHHHHHHhhhcccchHHHHHHHHHhc------cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc-----
Confidence 1112222112223333333322222 11122222222111 123344444333332
Q ss_pred cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 010994 269 QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML----EALMKLGEHEEAEKVLKEWELSGNSYDTRI 344 (496)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (496)
+...|.-.++.--+.|-+.+|+.+++ ++...+..+. ..+...+.+++|.-.|+..-+.
T Consensus 907 --~~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------- 968 (1265)
T KOG1920|consen 907 --GETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------- 968 (1265)
T ss_pred --CccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH--------
Confidence 22334444444455666666666655 5555544444 4445567777777777655332
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPN--SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
..-+.+|..+|++.+|+.+-.++.... |.. +-..|+.-+...+++-+|.++..+... .| ..
T Consensus 969 -ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s--------d~-----~~ 1031 (1265)
T KOG1920|consen 969 -EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLS--------DP-----EE 1031 (1265)
T ss_pred -HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--------CH-----HH
Confidence 346777888888888888877765421 222 225677778888888888888877654 12 12
Q ss_pred HHHHHhccCCHHHHHHHHHHH
Q 010994 423 ILSKLGDEGSVQDVEAFVAAL 443 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~ 443 (496)
.+..+++...|++|.++....
T Consensus 1032 av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1032 AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhHhHHHHHHHHHHhc
Confidence 233445555677777665543
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.02 E-value=0.1 Score=48.16 Aligned_cols=62 Identities=10% Similarity=0.145 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK----VITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
...++.+..+|...|++++|+..|+++++ +.|+.. .|..+..+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe-------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE-------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555554 444432 355555555555555555555554443
No 237
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=1.7 Score=42.65 Aligned_cols=267 Identities=12% Similarity=0.049 Sum_probs=142.0
Q ss_pred chhhhhhhHHHhhcCHHHHHHHHHhchhcC---C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH
Q 010994 99 CDHAVQLDLIGRVHGFLSAESYFSNLKDDE---K---TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI 172 (496)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 172 (496)
-.+..+.......|+.+.|..+++.-+... | +..-+...+.-..+.|+.+-...++-.+... .+...|...
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~ 584 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT 584 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH
Confidence 345566777778999999999887654432 1 2333455667777788888888777766553 122222222
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHH-HH---hhcCCCCCCCHHHHHHHHHHHH
Q 010994 173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIIL-RE---MESQPHIVLDWSTYASAAHFYI 248 (496)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~-~~---~~~~~~~~~~~~~~~~li~~~~ 248 (496)
+ .+.-.|..+|.+..++. |.. .+-+.|-...+...+-.+. +. .....+..|+..+ ....+.
T Consensus 585 l------~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a 649 (829)
T KOG2280|consen 585 L------RNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT---AANAFA 649 (829)
T ss_pred H------HhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHh
Confidence 2 23345556665554421 111 1111111111111111110 10 0000111233322 333333
Q ss_pred hcC----------ChHHHHHHHHHHHHh-cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994 249 KAN----------LIDKASDVLKKAEER-LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 317 (496)
Q Consensus 249 ~~~----------~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (496)
+.. +..+-+.+.+.+... +..-...+.+--+..+...|+-.+|.++-.+. ..||...|-.-+.++
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTAL 725 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHH
Confidence 322 222333444444222 32334455556666667777777777665433 237777777777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 397 (496)
+..+++++-+++-+... .+.-|..++..|.+.|+.++|.+++.+.... . ....+|.+.|++.+|.
T Consensus 726 a~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAA 790 (829)
T ss_pred HhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHH
Confidence 87777777665544321 2566777788888888888888877665442 1 3456677777777776
Q ss_pred HHHHH
Q 010994 398 QCMKA 402 (496)
Q Consensus 398 ~~~~~ 402 (496)
++--+
T Consensus 791 d~A~~ 795 (829)
T KOG2280|consen 791 DLAAE 795 (829)
T ss_pred HHHHH
Confidence 66544
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.99 E-value=0.55 Score=36.58 Aligned_cols=126 Identities=15% Similarity=0.105 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
...++..+...+.......+++.+...+. .+....+.++..|++.+. ++....+.. . .+.......+..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 34455556566666666666666666552 455566666666665432 223333321 1 233344456666666
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010994 390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE-GSVQDVEAFVAALRTVIPMNRQMYHAFIKANI 462 (496)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 462 (496)
.+-++++..++.++-. +...+..+... ++.+.|.+++++ ..++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~--------------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN--------------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC--------------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666666666666421 11122222222 666667666654 235556666665554
No 239
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.97 E-value=0.1 Score=45.28 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
.++..++..+...|+++.+...++++.+..+. +...|..++.+|.+.|+...|+..|+.+.....+..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35567888888899999999999999988766 88889999999999999999999999988877778899998888777
Q ss_pred HHHH
Q 010994 423 ILSK 426 (496)
Q Consensus 423 l~~~ 426 (496)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6666
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.92 E-value=0.49 Score=35.44 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=26.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.-+..+...|+-|.-.+++..+.+ +-.+++...-.+..+|.+.|+..++-+++.++-+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444555555555555555543 1233455555555555555555555555555554
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.2 Score=45.28 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI 458 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 458 (496)
++..+..+|.+.+++..|++.-.+.+. --++|....-.=..++...|+++.|+..|+++.+..|.|..+-+.|+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLE------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHh------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 445555566666666666666666654 22334445555555666666666666666666665555555544444
Q ss_pred HHHHhCC---CcHHHHHHHHH
Q 010994 459 KANIRNG---KGVDELLDSMK 476 (496)
Q Consensus 459 ~~~~~~g---~~a~~~~~~m~ 476 (496)
..-.+.. +...++|..|-
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 4444333 33445555554
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.77 E-value=0.58 Score=44.94 Aligned_cols=162 Identities=15% Similarity=-0.004 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccc
Q 010994 275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYIN------RDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRI 344 (496)
Q Consensus 275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (496)
+..++....=.|+-+.+++.+....+....-.+ -.|..++..++. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 445555566677777777777755443221111 123333433333 34677888888888876 566655
Q ss_pred HHHH-HHHHHhcCchhHHHHHHHHHHhcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHH
Q 010994 345 PNAV-IIGYCNNGLVQNAEAILEDLVEKG---KATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVI 420 (496)
Q Consensus 345 ~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 420 (496)
|... .+.+...|++++|++.|++..... .......+-.+...+.-.+++++|.+.|..+.+ .-..+..+|
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~------~s~WSka~Y 342 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK------ESKWSKAFY 342 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh------ccccHHHHH
Confidence 5433 234556788888888888755311 112334556666777888888888888888876 223333444
Q ss_pred HHHHHH-HhccCCH-------HHHHHHHHHHH
Q 010994 421 TSILSK-LGDEGSV-------QDVEAFVAALR 444 (496)
Q Consensus 421 ~~l~~~-~~~~g~~-------~~a~~~~~~~~ 444 (496)
..+..+ +...|+. ++|.++|+++.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 433332 3445666 77777777654
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.73 E-value=0.18 Score=46.54 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT----RIPNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
..++.+..+|.+.|++++|...|++..+. .|+. ..|..+..+|...|+.++|+..+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555544 2222 1245555555555555555555555554
No 244
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.65 E-value=1 Score=37.11 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=63.9
Q ss_pred HHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcH
Q 010994 107 LIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV 185 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 185 (496)
.|-..|-+..|.--|.+.....|+ +.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.--|++.-|
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LA 152 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLA 152 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhh
Confidence 455566777777777777777786 88899999999999999999999999988754433333333333 2345788888
Q ss_pred HHHHHHHHHCC
Q 010994 186 PDVLTEMKAKN 196 (496)
Q Consensus 186 ~~~~~~m~~~~ 196 (496)
.+=|...-+.+
T Consensus 153 q~d~~~fYQ~D 163 (297)
T COG4785 153 QDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHhcC
Confidence 87777766653
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.65 E-value=1.5 Score=38.96 Aligned_cols=164 Identities=12% Similarity=0.039 Sum_probs=84.4
Q ss_pred chHHHHHHHHHhcCCHH---HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 273 IGYNFLISLYASLGNKS---EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 273 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
.++..++.+|...+..+ +|..+++.+....+ .....+..-+..+.+.++.+.+.+++..|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 34566677777766544 45555555544443 23455556677777788888888888888876221 334445555
Q ss_pred HHHHh--cCchhHHHHHHHHHHhcCCCCCHh-HHHHH----HHHHHhcCC------hHHHHHHHHHHHHhhhcCCCCCCC
Q 010994 350 IGYCN--NGLVQNAEAILEDLVEKGKATTPN-SWAVV----AAGYFDAGK------TERGFQCMKAALSVYVEGKGWKPD 416 (496)
Q Consensus 350 ~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l----~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~p~ 416 (496)
..+.. ......|...+..+....+.|... ....+ +......++ .+...+++....+ ..+.+.+
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~----~~~~~ls 238 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH----SLGKQLS 238 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH----HhcCCCC
Confidence 44422 223445666666665444444432 11111 111112111 3334444443222 1233334
Q ss_pred HHHHH---HHHH----HHhccCCHHHHHHHHHH
Q 010994 417 PKVIT---SILS----KLGDEGSVQDVEAFVAA 442 (496)
Q Consensus 417 ~~~~~---~l~~----~~~~~g~~~~a~~~~~~ 442 (496)
..+.. ++++ .+.+.++++.|.+.|+-
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 44333 3332 34567888888888874
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.63 E-value=0.12 Score=44.01 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHhCCCCCChhHHHHHHhhhcC
Q 010994 466 KGVDELLDSMKADGIDEDEETKEILVCTMEK 496 (496)
Q Consensus 466 ~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~k 496 (496)
+=++.++++|...|+.||.++-.+|++++-|
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 5578999999999999999999999988743
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.63 E-value=0.046 Score=32.41 Aligned_cols=40 Identities=10% Similarity=0.166 Sum_probs=25.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010994 419 VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI 458 (496)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 458 (496)
++..+..+|...|++++|.++++++.+..|.|+..|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3455666666666666666666666666666666665544
No 248
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.59 E-value=2.1 Score=40.25 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=133.5
Q ss_pred CCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 010994 95 VFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC 174 (496)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 174 (496)
+.+......++..++..++++..+.+..++...+-+-..|-.++.+|..+ ..++-..+|+++.+..+. |+..-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 35555666778889999999999999999988878888899999999988 678889999999888664 5555555666
Q ss_pred HHHhcCCCCcHHHHHHHHHHCCCCC--C---hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010994 175 LYSKTGQYEKVPDVLTEMKAKNIFP--D---NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249 (496)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~~~~p--~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (496)
.|-+ ++.+++...|.+...+=++- + ...|.-+...- ..+.|...++...+....|...-...+.-+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 88899999999887652220 1 12455444322 457788888888887566665666667777788899
Q ss_pred cCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLY 282 (496)
Q Consensus 250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 282 (496)
..++++|++++..+.+.. ..|..+...++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 999999999999877654 35555555555544
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.58 E-value=0.29 Score=43.44 Aligned_cols=166 Identities=17% Similarity=0.018 Sum_probs=87.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc-----cCccch
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPHIVLD---WSTYASAAHFYIKANLIDKASDVLKKAEERLE-----QKDGIG 274 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~ 274 (496)
.|..+.+++-+.-++.+++.+-..-..-+|..|. -....++..++...+.++++++.|+....-.- .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3445555555555555555554443322333221 12223355666666677777777776533211 122356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CCCc-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-
Q 010994 275 YNFLISLYASLGNKSEVLRLWDLEKTACK---RYIN-RDYI-----TMLEALMKLGEHEEAEKVLKEWELS----GNSY- 340 (496)
Q Consensus 275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 340 (496)
+..+...|.+..++++|.-+......... ..|. .-|. -|.-++...|++..|.+.-++..+. |-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777777777777777665543332211 1111 1122 2334456667777777666665543 3211
Q ss_pred CcccHHHHHHHHHhcCchhHHHHHHHHH
Q 010994 341 DTRIPNAVIIGYCNNGLVQNAEAILEDL 368 (496)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (496)
.......+.+.|-..|+.|.|+.-|++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223345667777788888777766654
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.54 E-value=0.88 Score=43.74 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH-HhcCCh-------HHHHHHHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY-FDAGKT-------ERGFQCMKAALS 405 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~-------~~a~~~~~~~~~ 405 (496)
-+.-.+.-.+++++|...|..+.+.+-. ...+|..+..+| ...|+. ++|.++|.++-.
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3444455556666666666666554322 233333333222 234444 666666666555
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=0.46 Score=40.67 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=65.3
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKA--TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVI 420 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~ 420 (496)
.|+.-+.. .+.|++..|...|...++..+. -....+--|..++...|++++|...|..+.+. .+-.| -+..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~----~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD----YPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh----CCCCCCChHHH
Confidence 45555543 3456677777777777765432 01123344677777777777777777777762 22223 23566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994 421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM 453 (496)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 453 (496)
--|.....+.|+.++|..+|+.+.+.+|.+...
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 666667777788888888888777766655543
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.42 E-value=1.5 Score=37.42 Aligned_cols=169 Identities=14% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHhcCCHHHHHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc----
Q 010994 282 YASLGNKSEVLRLWDLEKTACK--RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN---- 355 (496)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 355 (496)
-.+.|++++|.+.|+.+....+ .....+...++.++.+.++++.|....++..+.-+.....-|-..|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3456667777777766655444 1122344455566666777777777777666653332233344444444421
Q ss_pred ---Cchh---HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH---HHHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 010994 356 ---GLVQ---NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERG---FQCMKAALSVYVEGKGWKPDPKVITSILSK 426 (496)
Q Consensus 356 ---g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 426 (496)
.+.. .|..-|++++++= ||. .-...| +..+...+. + -=..+.+-
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry--PnS-------------~Ya~dA~~~i~~~~d~LA------~------~Em~Iary 176 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY--PNS-------------RYAPDAKARIVKLNDALA------G------HEMAIARY 176 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC--CCC-------------cchhhHHHHHHHHHHHHH------H------HHHHHHHH
Confidence 1222 2233333333321 222 111222 222222221 1 11245677
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 427 LGDEGSVQDVEAFVAALRTVIPMNR---QMYHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
|.+.|.+..|..-++.+.+..+.+. ..+-.+..+|...| ++|...-.-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8999999999999998888755444 45667788899999 566655544443
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=1.5 Score=38.06 Aligned_cols=145 Identities=11% Similarity=0.064 Sum_probs=63.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHH
Q 010994 141 YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGM 220 (496)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 220 (496)
....|++.+|..+|......... +...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455555555555555443222 33444445555555555555555555543321111111111223333333333333
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHH
Q 010994 221 EIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL-EQKDGIGYNFLISLYASLGNKS 289 (496)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~ 289 (496)
..+-.+.- .++ -|...-..+...+...|+.+.|.+.+-.+.... --.|...-..++..+.-.|.-+
T Consensus 223 ~~l~~~~a--adP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 223 QDLQRRLA--ADP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHH--hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 33333332 111 234444445555566666666655554443321 1134445555555555555333
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=1.7 Score=37.88 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=66.3
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC
Q 010994 49 ELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE 128 (496)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 128 (496)
-+.+|..+-.++....-..-...+...|++.+|..+|........ -+.+....+...+...|+.+.|..++..++...
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 344454443333222223333445566677777777776666541 234444445556666666666666666655543
Q ss_pred CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994 129 KTYQT--YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194 (496)
Q Consensus 129 ~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (496)
.+... ...-|..+.+.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32111 112233333333333333333332221 11444444555555555666555555544443
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.36 E-value=0.34 Score=37.18 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=42.3
Q ss_pred hHHHhhcCHHHHHHHHHhchhcCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 010994 106 DLIGRVHGFLSAESYFSNLKDDEK----TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK 178 (496)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 178 (496)
....+.|++++|.+.|+.+....| ...+--.|+.+|.+.+++++|...+++..+.....-..-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 334445555555555555555433 2445556777777778888888777777776443333445545554443
No 256
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.66 Score=42.05 Aligned_cols=96 Identities=9% Similarity=-0.042 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY 387 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 387 (496)
.++..+.-++.+.+++..|.+........+ ++|....-.-..+|...|+++.|+..|+++++..+. |-..-+.++..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456778888888999999998888888775 446666666778888889999999999998886543 444444444444
Q ss_pred HhcCChH-HHHHHHHHHHH
Q 010994 388 FDAGKTE-RGFQCMKAALS 405 (496)
Q Consensus 388 ~~~~~~~-~a~~~~~~~~~ 405 (496)
.+..... ...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4444433 34677777776
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.25 E-value=0.5 Score=35.25 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=64.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcC
Q 010994 245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN---RDYITMLEALMKLG 321 (496)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 321 (496)
.+++..|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|++-+++..+....... ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45677788888888888776643 356677888888888888888888888777665442211 23444455667778
Q ss_pred CHHHHHHHHHHHHhcC
Q 010994 322 EHEEAEKVLKEWELSG 337 (496)
Q Consensus 322 ~~~~a~~~~~~~~~~~ 337 (496)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888777776665
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.22 E-value=2.1 Score=38.13 Aligned_cols=160 Identities=11% Similarity=0.085 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHhcccCccchHHHHHHHHHh--cC----CHHHHHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCC-
Q 010994 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYAS--LG----NKSEVLRLWDLEKTACK---RYINRDYITMLEALMKLGE- 322 (496)
Q Consensus 253 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 322 (496)
+++...+++.|.+.|...+..+|-+..-.... .. ....+..+|+.|++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777777666553333322 22 34567888888888776 3334455555443 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCc--hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994 323 ---HEEAEKVLKEWELSGNSYDTR--IPNAVIIGYCNNGL--VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395 (496)
Q Consensus 323 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 395 (496)
.+.++.+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.|+++....|..+.-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 456677888888877754433 22333322222211 45778889999999988877777766655544444435
Q ss_pred HHHHHHHHHHhhhcCCCCC
Q 010994 396 GFQCMKAALSVYVEGKGWK 414 (496)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~ 414 (496)
...-+.++.+...++.++.
T Consensus 236 ~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHhhCcccC
Confidence 5555555544333344544
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.20 E-value=1.2 Score=39.81 Aligned_cols=228 Identities=14% Similarity=0.052 Sum_probs=118.7
Q ss_pred HhcCCCCcHHHHHHHHHHC--CCCCChhhHHHHHHHHhhcCChHHHHHHH-HHhhcCCCCCCC---HHHHHHHHHHHHhc
Q 010994 177 SKTGQYEKVPDVLTEMKAK--NIFPDNFSYRICINSYGARSDLEGMEIIL-REMESQPHIVLD---WSTYASAAHFYIKA 250 (496)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~---~~~~~~li~~~~~~ 250 (496)
....+.++|+..+.+-..+ +..---.+|..+..+.++.|.+++++..- ..|........+ ...|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777665543 11122345677777788888877766543 222211111111 12223333334333
Q ss_pred CChHHHHHHHHHHHHh-cccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcC
Q 010994 251 NLIDKASDVLKKAEER-LEQK---DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-----RYINRDYITMLEALMKLG 321 (496)
Q Consensus 251 ~~~~~a~~~~~~m~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~ 321 (496)
-++.+++.+-..-... |..| .......+..++...+.++++++.|+....-.. ......+..+...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444443332211 1111 112344466666777777888887775544322 112245777777788888
Q ss_pred CHHHHHHHHHHHHhc----CCCCCcc-cH-----HHHHHHHHhcCchhHHHHHHHHHH----hcCCCCC-HhHHHHHHHH
Q 010994 322 EHEEAEKVLKEWELS----GNSYDTR-IP-----NAVIIGYCNNGLVQNAEAILEDLV----EKGKATT-PNSWAVVAAG 386 (496)
Q Consensus 322 ~~~~a~~~~~~~~~~----~~~~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p~-~~~~~~l~~~ 386 (496)
|+++|.-+..+..+. ++. |.. -| -.+..++-..|+.-.|.+..++.. +.|-.|. ....-.+.+.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888877666655432 211 111 11 223344556677777776666643 3332211 1234455666
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 010994 387 YFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~ 405 (496)
|-..|+.+.|+.-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777788887777777764
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.18 E-value=2.1 Score=37.95 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=11.0
Q ss_pred HhccChhHHHHHHHHHHhC
Q 010994 73 RKRKRFSQALEVSDWMNRK 91 (496)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~ 91 (496)
.+.|+.+.|..++......
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 3456666666666665553
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.06 E-value=0.27 Score=42.77 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH-----hCCCCCChhHHHHHH
Q 010994 419 VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK-----ADGIDEDEETKEILV 491 (496)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~-----~~g~~p~~~t~~~l~ 491 (496)
++..++..+..+|+.+.+...++.+....|-+...|..++.+|.+.| ..|++.|+++. +.|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 34445555555666666666666665555566666666666666666 45555555443 356666666655444
Q ss_pred h
Q 010994 492 C 492 (496)
Q Consensus 492 ~ 492 (496)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.04 E-value=0.64 Score=34.71 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=59.6
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH---HHHHHHHHHH
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP---KVITSILSKL 427 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~ 427 (496)
++...|+.+.|++.|.+.+..-+. ....||.-.+++--+|+.++|++-++++++. .|-+ .. ..|..-...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCcc-chHHHHHHHHHHHHH
Confidence 456678888888888887775433 6777888888888888888888888888772 1222 11 1233333356
Q ss_pred hccCCHHHHHHHHHHHHh
Q 010994 428 GDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~ 445 (496)
...|+.+.|..-|+....
T Consensus 126 Rl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHhCchHHHHHhHHHHHH
Confidence 667888888877776544
No 263
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.99 E-value=2 Score=36.66 Aligned_cols=209 Identities=13% Similarity=0.067 Sum_probs=116.6
Q ss_pred CCCCChhhHHHHHHHH-hhcCChHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHh---ccc
Q 010994 196 NIFPDNFSYRICINSY-GARSDLEGMEIILREMESQPHIVLDW--STYASAAHFYIKANLIDKASDVLKKAEER---LEQ 269 (496)
Q Consensus 196 ~~~p~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~ 269 (496)
+..||+..-|..-++- .+..++++|+.-|.+...-.|-+-+| .+.-.+|..+.+.+++++..+.|.++..- .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456655433332221 23457788888888776223332333 33456778888888888888888887542 111
Q ss_pred --CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 010994 270 --KDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC-----KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY-- 340 (496)
Q Consensus 270 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 340 (496)
-+....|+++..-.-..+.+....+|+.-...- .+.--.|-.-+...|...+++.+..++++++..+.-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 233456667766666666666666665332211 12222344556677777777777777777776542111
Q ss_pred ---------CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CCHhHHHHHHHH-----HHhcCChHHHHHHHHHHHH
Q 010994 341 ---------DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TTPNSWAVVAAG-----YFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 341 ---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~ 405 (496)
-..+|..-|..|....+-.+...++++...-... |.+.. ...|.- ..+.|++++|-.-|-++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1234555566666666666666666666655322 23222 222332 2355666777666666665
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.96 E-value=1.1 Score=33.58 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374 (496)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (496)
...+..+...|+-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455566667777777777666542 2456666666777777777777777777777666643
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.89 E-value=2.1 Score=36.40 Aligned_cols=202 Identities=18% Similarity=0.111 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEER-LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE 315 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 315 (496)
...+......+...+++..+...+...... ........+......+...++...+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555666666666666666655432 122333445555555555666666666666544433322 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994 316 -ALMKLGEHEEAEKVLKEWELSGN--SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK 392 (496)
Q Consensus 316 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 392 (496)
.+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666677777776666644211 011222223333345566777777777776664322134556666667777777
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 393 TERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
.+.|...+..+.. ..|+ ...+..+...+...|..+.+...+......
T Consensus 218 ~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALE-------LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHh-------hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777765 3333 333344444444555677777766665554
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=0.66 Score=46.00 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=124.6
Q ss_pred CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 010994 96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT--YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM 173 (496)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 173 (496)
+.+-.....+..+.+...++.|+.+-+.-... ++ ........+.+.+.|++++|...|-+-... +.|. .+|
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 34555666788899999999999887654432 22 344555667778899999999988765543 2222 345
Q ss_pred HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 010994 174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI 253 (496)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 253 (496)
.-|........-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+... +.....|..+ .+..+.+.+-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~---al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVET---ALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHH---HHHHHHHhChH
Confidence 5566666666677788889988875 44556789999999999999888887775 3333345554 77778888888
Q ss_pred HHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010994 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDL 297 (496)
Q Consensus 254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 297 (496)
++|..+-..... +......+ +-..+++++|++++..
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 888777665322 22333333 3456778888887763
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.68 E-value=3.6 Score=38.06 Aligned_cols=129 Identities=11% Similarity=0.167 Sum_probs=56.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchH-HHHHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPH-IVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGY-NFLIS 280 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~ 280 (496)
+|...++.-.+..-++.|..+|-++. +.+ +.+++..+++++..++ .|+..-|.++|+--... -||...| +-.+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~r-k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLR-KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHh-ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 34444454445555555555555555 333 3344445555554443 34444555555442221 1232222 22334
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 281 LYASLGNKSEVLRLWDLEKTACKR-YINRDYITMLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 281 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
.+...++-+.|..+|+.....-.. .-...|..+|..=++-|++..+..+-+.+..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 444455555555555533222110 1123444455544555555555444444443
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.67 E-value=3 Score=39.18 Aligned_cols=57 Identities=7% Similarity=-0.015 Sum_probs=24.7
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 207 CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
+..++-+.|+.++|.+.+++|.++.....+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444445555555555544411111112233344455555555555555555444
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.59 E-value=1.5 Score=33.79 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010994 283 ASLGNKSEVLRLWDLEKTACKR--YINRDYITMLEALMKLGEHEEAEKVLKEWELSG 337 (496)
Q Consensus 283 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (496)
.+.|++++|.+.|+.+....+. -.......++.+|.+.+++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3445555555555544443331 111233344455555555555555555555443
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.54 E-value=0.14 Score=30.24 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV 382 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 382 (496)
++..+...|.+.|++++|.++|+++++..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 3445556666666666666666666665433 4444433
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.38 E-value=2.8 Score=35.59 Aligned_cols=221 Identities=15% Similarity=0.091 Sum_probs=155.0
Q ss_pred cCChHHHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCCHHHHH
Q 010994 250 ANLIDKASDVLKKAEERLEQ-KDGIGYNFLISLYASLGNKSEVLRLWDLEKTA-CKRYINRDYITMLEALMKLGEHEEAE 327 (496)
Q Consensus 250 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (496)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666655443321 13567777888888999999999988866553 23345566777778888888999999
Q ss_pred HHHHHHHhcCCCCCcccHHHHHH-HHHhcCchhHHHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 328 KVLKEWELSGNSYDTRIPNAVII-GYCNNGLVQNAEAILEDLVEKGK--ATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 404 (496)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.++.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988764333 222333333 68899999999999999866332 1234445555555778899999999999998
Q ss_pred HhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 405 SVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 405 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
. .... ....+..+...+...++++.|...+.......+.....+..+...+...+ +.+...+.+...
T Consensus 195 ~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 K------LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred h------hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 3333 36778888888999999999999999888765554556666666666445 566666666554
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=3.3 Score=36.69 Aligned_cols=151 Identities=12% Similarity=0.016 Sum_probs=97.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChh--hHH--HHHHHHhhcCChH
Q 010994 143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNF--SYR--ICINSYGARSDLE 218 (496)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~--~li~~~~~~~~~~ 218 (496)
-.|++.+|...|+++.+. .+.|..+++..=.+|...|+...-...+++.... ..||.. +|. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457788888888888775 5558888888888888888888888888777654 233332 232 2333455678888
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---cccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994 219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER---LEQKDGIGYNFLISLYASLGNKSEVLRLW 295 (496)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 295 (496)
+|++.-++.. +.+. .|.-.-.++...+-..|+..++.++..+-.+. +.-.-..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ral-qiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRAL-QINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhc-cCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888887776 5554 45555556777777788888888776653221 00001112223333455668888888888
Q ss_pred HH
Q 010994 296 DL 297 (496)
Q Consensus 296 ~~ 297 (496)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 74
No 273
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.30 E-value=0.81 Score=32.46 Aligned_cols=76 Identities=11% Similarity=0.217 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChH--HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994 380 WAVVAAGYFDAGKTE--RGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF 457 (496)
Q Consensus 380 ~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 457 (496)
|..--..|....+.+ +..+-+..+.. ..+-|++.+..+.+.+|.+.+++..|.++|+.++.........|..+
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~-----~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFG-----YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTT-----SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhc-----cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 333334444444333 44555555554 67889999999999999999999999999998888765555578777
Q ss_pred HHH
Q 010994 458 IKA 460 (496)
Q Consensus 458 ~~~ 460 (496)
++-
T Consensus 86 lqE 88 (108)
T PF02284_consen 86 LQE 88 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.18 E-value=0.9 Score=36.98 Aligned_cols=97 Identities=9% Similarity=0.126 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS--TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209 (496)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 209 (496)
..+..+.+.|.+.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+.....+....-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577888899999999999999999887644433 34567788888888888888888877765422222222222122
Q ss_pred -----HHhhcCChHHHHHHHHHhh
Q 010994 210 -----SYGARSDLEGMEIILREME 228 (496)
Q Consensus 210 -----~~~~~~~~~~a~~~~~~~~ 228 (496)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2334677877777776665
No 275
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.07 E-value=1.4 Score=30.94 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994 392 KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA 460 (496)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 460 (496)
+.-++.+-++.+.. ..+-|++.+..+-+++|.+.+++..|.++|+.++.....+...|..+++-
T Consensus 22 D~we~rr~mN~l~~-----~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFG-----YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHH
Confidence 34455666666665 67889999999999999999999999999998886655556677766643
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.96 E-value=2.6 Score=33.50 Aligned_cols=121 Identities=9% Similarity=-0.004 Sum_probs=54.5
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHhcccCccc-hHHH--HHHHHHhcCC
Q 010994 213 ARSDLEGMEIILREMESQPHIVLDWSTY--ASAAHFYIKANLIDKASDVLKKAEERLEQKDGI-GYNF--LISLYASLGN 287 (496)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~--l~~~~~~~~~ 287 (496)
+.+..++|+.-|..+. +.|.. +.... -.........|+...|...|+++-.....|... -... -...+..+|.
T Consensus 70 ~~~k~d~Alaaf~~le-ktg~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 70 QENKTDDALAAFTDLE-KTGYG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HcCCchHHHHHHHHHH-hcCCC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4455555555565555 33331 11111 112233445566666666666654433333222 1111 1122345566
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 288 KSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 288 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
++....-.+-+...+...-...-..|.-+..+.|++..|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 665555554332222222222334455555566666666666666654
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.93 E-value=6.4 Score=37.95 Aligned_cols=328 Identities=11% Similarity=0.057 Sum_probs=162.6
Q ss_pred hhcCHHHHHHHHHhchhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCCCcHHH
Q 010994 110 RVHGFLSAESYFSNLKDDEKTY-QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYS-KTGQYEKVPD 187 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~ 187 (496)
...+.+.+...++.+....|.. .-|......=.+.|..+.+.++|++-... ++.+...|......+. ..|+.+...+
T Consensus 57 ~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 57 SIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred chhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3334455666666666656653 34556666666677777777777776553 5556666655554443 3345556666
Q ss_pred HHHHHHHC-CCC-CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---c------CChHHH
Q 010994 188 VLTEMKAK-NIF-PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK---A------NLIDKA 256 (496)
Q Consensus 188 ~~~~m~~~-~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~------~~~~~a 256 (496)
.|+..+.. |.. -....|...|.--..++++.....+++++. +. | ...|+..-.-|.+ . ...+++
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil-ei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~ 210 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL-EI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDEL 210 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH-hh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHH
Confidence 66666654 221 123345556665566666777777777666 21 1 1112222211111 1 111111
Q ss_pred HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc---hhHHHHHHHH-------HhcCCHHHH
Q 010994 257 SDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN---RDYITMLEAL-------MKLGEHEEA 326 (496)
Q Consensus 257 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~-------~~~~~~~~a 326 (496)
.++-...... ..-...+...+-.+.+ +... ..|.. ...+.+-..+ .........
T Consensus 211 ~~l~~~~~~~-------------~~~~~~~~~~e~~~~~--v~~~-~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 211 IQLRSDVAER-------------SKITHSQEPLEELEIG--VKDS-TDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HHHhhhHHhh-------------hhcccccChhHHHHHH--Hhhc-cCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 1111111100 0000001111111111 1111 11111 1111111111 111222222
Q ss_pred HHHHHHHHhcC---C----CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994 327 EKVLKEWELSG---N----SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC 399 (496)
Q Consensus 327 ~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 399 (496)
...++.-.+.. + .++..+|...+.--.+.|+.+.+.-+|++..-. +..-...|--.+.-....|+.+-|-.+
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 23333333221 1 223456777888888899999999999987653 222334566666666677999999888
Q ss_pred HHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 400 MKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
+....+.. ..-.|....+.+.+ +-..|++..|..+++.+.+..|--...-..-+....+.|
T Consensus 354 ~~~~~~i~---~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 354 LARACKIH---VKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHhhhhhc---CCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 88877621 12233334443333 345689999999999998877333333333344455555
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.89 E-value=0.78 Score=37.34 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=11.1
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010994 388 FDAGKTERGFQCMKAALS 405 (496)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~ 405 (496)
...+++..|.+.|-+...
T Consensus 124 l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 124 LAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHhchHHHHHHHHHccCc
Confidence 345667777666666554
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.88 E-value=2.5 Score=33.22 Aligned_cols=20 Identities=25% Similarity=0.337 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 010994 141 YVRQRQTDKALSHFRKMKEM 160 (496)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~ 160 (496)
+.+.|++.+|..+|+++.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 34445555555555554443
No 280
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=7.8 Score=38.63 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=74.4
Q ss_pred hhhHHHhhcCHHHHHHHHHhchhcCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 010994 104 QLDLIGRVHGFLSAESYFSNLKDDEK---TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG 180 (496)
Q Consensus 104 ~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 180 (496)
-++-+.+.+.+++|+...+......| -..++..+|+.+.-.|++++|-...-.|... +..-|...+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 35677788889999998887776655 3567889999999999999999999888876 7788888888887777
Q ss_pred CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994 181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA 213 (496)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 213 (496)
+......+ +.......+...|..++..+..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 66443322 2222222345567777766665
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=1.7 Score=41.56 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=43.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHH
Q 010994 143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI 222 (496)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 222 (496)
+.|+.+.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3455555554443321 333455555555555555555555544332 3334444444454444333
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK 262 (496)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 262 (496)
+-.... ..|. .|....+|...|+++++.+++..
T Consensus 714 la~~~~-~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAK-KQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHH-hhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 333333 2222 11122344455555555555543
No 282
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.73 E-value=0.0027 Score=49.89 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
+|..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34455555666666666666665544445666666666666665555555555411 11222334444555555
Q ss_pred hHHHHHHHHHh
Q 010994 217 LEGMEIILREM 227 (496)
Q Consensus 217 ~~~a~~~~~~~ 227 (496)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555544444
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.71 E-value=0.18 Score=28.23 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777543
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.69 E-value=0.071 Score=29.43 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=22.0
Q ss_pred HhchhcCC-CHHHHHHHHHHHHhcCCHHHHH
Q 010994 122 SNLKDDEK-TYQTYGALLNCYVRQRQTDKAL 151 (496)
Q Consensus 122 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 151 (496)
++..+.+| |..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444466 5888888888888888888875
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.68 E-value=7.1 Score=37.66 Aligned_cols=387 Identities=12% Similarity=0.116 Sum_probs=223.1
Q ss_pred CCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhh---hhHHHhhcCHHHHHHHHHhchhcCC-CHHHH
Q 010994 59 KVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQ---LDLIGRVHGFLSAESYFSNLKDDEK-TYQTY 134 (496)
Q Consensus 59 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 134 (496)
..+...|..||.--......+.+..++..+.... |-.+.+. ...=.+.|..+.+.++|++....-| +...|
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-----Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW 116 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-----PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLW 116 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhhC-----ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 3445566777766666666677778888887765 4444443 4444578888999999998777655 56666
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHC-CCC-CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010994 135 GALLNC-YVRQRQTDKALSHFRKMKEM-GIA-LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSY 211 (496)
Q Consensus 135 ~~li~~-~~~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 211 (496)
...... ....|+.+...+.|+..+.. |.. -+...|...|..-...+++.....+|++.++... ..|+....-|
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f 192 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRF 192 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHH
Confidence 555443 33567888888888887654 211 1455677888877788888899999988876421 1222222211
Q ss_pred h---hc------CChHHHHHHHHHhhc-------------------CCCCCCC--HHHHHHHH-------HHHHhcCChH
Q 010994 212 G---AR------SDLEGMEIILREMES-------------------QPHIVLD--WSTYASAA-------HFYIKANLID 254 (496)
Q Consensus 212 ~---~~------~~~~~a~~~~~~~~~-------------------~~~~~~~--~~~~~~li-------~~~~~~~~~~ 254 (496)
. +. ...+.+.++-..... ..+-+.+ ....+.+- ..+.......
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEE 272 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 1 11 122222222211110 0000000 00011111 1111122222
Q ss_pred HHHHHHHHHHHh---cc----cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 010994 255 KASDVLKKAEER---LE----QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAE 327 (496)
Q Consensus 255 ~a~~~~~~m~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (496)
.....|+.-... .+ .++..+|..-+..-...|+.+.+.-+|+.....+..-+ ..|-..+.-....|+.+.|.
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~ 351 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLAN 351 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHH
Confidence 222223322111 11 12446788888888899999999999987766554222 33444444444559999998
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH-HhcCchhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHhcCChHHHH---HHHHH
Q 010994 328 KVLKEWELSGNSYDTRIPNAVIIGY-CNNGLVQNAEAILEDLVEKGKATTPN-SWAVVAAGYFDAGKTERGF---QCMKA 402 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~---~~~~~ 402 (496)
.++....+--.+ +......+-..+ -..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++..
T Consensus 352 ~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~ 428 (577)
T KOG1258|consen 352 NVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSS 428 (577)
T ss_pred HHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHH
Confidence 888777655332 322222222222 34689999999999998763 4433 2233344556777877777 44444
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHH-----HHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 403 ALSVYVEGKGWKPDPKVITSILS-----KLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 403 ~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
... | +-+..+...+.- .+.-.++.+.|..++..+.+..|++...|..+++-....+
T Consensus 429 ~~~------~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 429 IYE------G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcc------c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 433 2 122222222221 2334588999999999999999999999999998887766
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.45 E-value=3.1 Score=32.77 Aligned_cols=113 Identities=11% Similarity=-0.074 Sum_probs=69.0
Q ss_pred HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHH
Q 010994 69 IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTD 148 (496)
Q Consensus 69 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 148 (496)
+..-.+.++.+++..++..+..-. |..+..-..-...+...|++.+|..+|+.+.+..|....-.+|+..|....+-.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 334456789999999999998865 234455555567888999999999999999887775555555665555443322
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHH
Q 010994 149 KALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVP 186 (496)
Q Consensus 149 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 186 (496)
.=...-+++.+.+-.|+.. .+++.+....+...|.
T Consensus 95 ~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 2223334455554333322 3344444444444333
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=4.1 Score=36.11 Aligned_cols=156 Identities=12% Similarity=0.025 Sum_probs=107.7
Q ss_pred hHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH----HHHHHHHHhcC
Q 010994 106 DLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY----NDIMCLYSKTG 180 (496)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~~ 180 (496)
...-..|+..+|-...+++....| |...++-.=+++.-.|+.+.-...++++... ..||...| ....-++...|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 334456778888878888887777 6777888888999999999999999988755 23344333 33344556889
Q ss_pred CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHhcCChHHHHH
Q 010994 181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIV--LDWSTYASAAHFYIKANLIDKASD 258 (496)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~ 258 (496)
-+++|.+.-++..+-+ +-|...-.++...+--.|++.++.++..+-...-... .-...|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999888877643 3356666777888888999999999887765111100 001112223345667799999999
Q ss_pred HHHHH
Q 010994 259 VLKKA 263 (496)
Q Consensus 259 ~~~~m 263 (496)
+|+.=
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 99853
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.40 E-value=7.2 Score=36.86 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 311 ITMLEALMKLGEHEEAEKVLKEWELSGNS-YDTRIPNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
..+..++.+.|+.++|.+.+.++.+.... .+..+...|+..+...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555666777777777777777654322 1233556677777777777777777776543
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.31 E-value=3.4 Score=36.84 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=33.1
Q ss_pred cHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----cChhHHHHHHHHHHhCCCCCCCcchhhh
Q 010994 46 IEPELDNWVKNGNKVRVGELQRIIRDLRK--R----KRFSQALEVSDWMNRKGICVFAPCDHAV 103 (496)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 103 (496)
+..+.+.+.+.|..-+..+|-+....+.. . ....+|.++|+.|++.+++--+++.+..
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~ 144 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPF 144 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhH
Confidence 33345666666777777666553333332 1 2346788888888887754333433333
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.21 E-value=6.9 Score=36.12 Aligned_cols=70 Identities=14% Similarity=0.046 Sum_probs=49.3
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994 305 YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY---DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374 (496)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (496)
....++..+...+.+.|.++.|...+..+.+.+... .+.+.-.-.+.+-..|+.++|+..++...+....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 344667788888888999999988888887654222 3344444566667788888888888888774444
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.18 E-value=0.25 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 378 NSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+|..+...|...|++++|+..|+++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777788888888888888888776
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=92.89 E-value=8.4 Score=36.21 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=105.0
Q ss_pred chH--HHHHHHHHhc-----CCHHHHHHHHHHHHhhcC-CCC-chhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 010994 273 IGY--NFLISLYASL-----GNKSEVLRLWDLEKTACK-RYI-NRDYITMLEALMK---------LGEHEEAEKVLKEWE 334 (496)
Q Consensus 273 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 334 (496)
..| ...+.+.... ...+.|+.+|.+...... .|+ ...|..+..++.. ..+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5566655442 245678888887773322 222 3445444443322 234566777777777
Q ss_pred hcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC
Q 010994 335 LSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK 414 (496)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 414 (496)
+.+ ..|......+..++.-.++++.|..+|++....++. ...+|......+.-.|+.++|.+.++++++ ..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr-------Ls 402 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ-------LE 402 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------cC
Confidence 775 346777777777777888899999999999987654 556777777778889999999999999876 56
Q ss_pred CCHH---HHHHHHHHHhccCCHHHHHHHHH
Q 010994 415 PDPK---VITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 415 p~~~---~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
|... .....+..|+. ..++.|.+++-
T Consensus 403 P~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHHHHHcC-CchhhhHHHHh
Confidence 6543 33333445554 45677777654
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.86 E-value=4.1 Score=32.54 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=10.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCh
Q 010994 231 PHIVLDWSTYASAAHFYIKANLI 253 (496)
Q Consensus 231 ~~~~~~~~~~~~li~~~~~~~~~ 253 (496)
.+++|+...|..++..+.+.|++
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCH
Confidence 33444444444444444444443
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.54 E-value=16 Score=38.56 Aligned_cols=86 Identities=9% Similarity=0.037 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL 424 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 424 (496)
|.+....+.+.+.+++|--.|+..-+. .--+.+|..+|+|.+|+.+..++.. +-.--..+-..|+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~------~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE------GKDELVILAEELV 1006 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC------CHHHHHHHHHHHH
Confidence 344444455567777776666554331 2345677777888888777766532 1111111225666
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 010994 425 SKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~~~~ 445 (496)
.-+...++.-+|-++..+..+
T Consensus 1007 s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhc
Confidence 677777777777777665543
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.38 E-value=0.38 Score=26.86 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKM 157 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m 157 (496)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566777777777777777777764
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.29 E-value=0.26 Score=27.18 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994 365 LEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 365 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 397 (496)
|++.++.++. |...|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555544 6777777777888888777764
No 297
>PRK09687 putative lyase; Provisional
Probab=92.28 E-value=7.8 Score=34.38 Aligned_cols=135 Identities=15% Similarity=0.104 Sum_probs=66.9
Q ss_pred CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 010994 341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KTERGFQCMKAALSVYVEGKGWKPDPKV 419 (496)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 419 (496)
+..+-...+.++.+.++ +.+...+-.+.+. +|...-...+.++.+.+ +...+...+..++. .++..+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--------D~~~~V 208 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--------DKNEEI 208 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--------CCChHH
Confidence 33444445555555554 3444444444432 23333333444444432 13345555555543 345555
Q ss_pred HHHHHHHHhccCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHhCCCCCChhHHHHHHhhhc
Q 010994 420 ITSILSKLGDEGSVQDVEA-FVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSMKADGIDEDEETKEILVCTME 495 (496)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 495 (496)
-...+.++.+.|+.. |.. +.+.+.. ++ .....+.++...| .+|...+.++.+. .||...-...+.+|.
T Consensus 209 R~~A~~aLg~~~~~~-av~~Li~~L~~---~~--~~~~a~~ALg~ig~~~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 209 RIEAIIGLALRKDKR-VLSVLIKELKK---GT--VGDLIIEAAGELGDKTLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHccCChh-HHHHHHHHHcC---Cc--hHHHHHHHHHhcCCHhHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666666666633 333 3333332 22 2235566666666 5667666666652 246666555555543
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.72 E-value=2.4 Score=34.73 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 429 (496)
-.+.+.|+ +.|.+.|-.+...+..-++.....+...|. ..+.+++.+++.++++.. +.+-.+|+..+.+|...+.+
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~--~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS--NPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHH
Confidence 33445554 456666666666655545555555554444 567788888888887732 33446778888888888888
Q ss_pred cCCHHHHH
Q 010994 430 EGSVQDVE 437 (496)
Q Consensus 430 ~g~~~~a~ 437 (496)
.|+++.|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 88877764
No 299
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.51 E-value=14 Score=37.14 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc-cCccchHHHHHHHHHh--
Q 010994 208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-QKDGIGYNFLISLYAS-- 284 (496)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~-- 284 (496)
...+.-.|+++.|.+++-... ....+..++...+..|.-.+-.+... ..+..... .|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~---~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE---FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhhc---cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 344556788888888876621 22255555444333332211111111 22211110 1112557778888876
Q ss_pred -cCCHHHHHHHHHHHH
Q 010994 285 -LGNKSEVLRLWDLEK 299 (496)
Q Consensus 285 -~~~~~~a~~~~~~~~ 299 (496)
..+..+|.++|-.+.
T Consensus 339 ~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 339 EITDPREALQYLYLIC 354 (613)
T ss_dssp TTT-HHHHHHHHHGGG
T ss_pred hccCHHHHHHHHHHHH
Confidence 457788888887443
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.48 E-value=0.54 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.598 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.|..+...+...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777777665
No 301
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.23 E-value=6.5 Score=31.41 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=45.7
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC
Q 010994 154 FRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHI 233 (496)
Q Consensus 154 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 233 (496)
+..+.+.|++|+...|..+++.+.+.|++ ..+..+.+.++-+|.......+-.+.. ....+.++=-.|....+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-
Confidence 33444556666666666666666666653 333444455555555444433322221 12222222222221111
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 234 VLDWSTYASAAHFYIKANLIDKASDVLKK 262 (496)
Q Consensus 234 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 262 (496)
..+..++..+...|++-+|.++...
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1234455555666666666655554
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.94 E-value=10 Score=33.17 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCCChhhHHHHHHHHhhcCChHHHHHH
Q 010994 163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK-NIFPDNFSYRICINSYGARSDLEGMEII 223 (496)
Q Consensus 163 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~ 223 (496)
.++..+...++..+++.++|.+-.++++..... +..-|...|...|+.....||..-..++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 344444444455555555555444444444333 2333444455555555555554443333
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=9.6 Score=32.36 Aligned_cols=119 Identities=8% Similarity=0.075 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHHHhcCC-----CCCcccHHHHHHHHHhcCchhHHHHHHHHHHh----cCCCCCH-hHHHHHHHHHHh
Q 010994 320 LGEHEEAEKVLKEWELSGN-----SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE----KGKATTP-NSWAVVAAGYFD 389 (496)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~ 389 (496)
.-+++.|.+++++....-. ..-...+...-..+.+..++++|-..+.+-.. ..-.|+. ..|...|-.+..
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 3455666666655442200 01122344455556666666666555443321 1111222 246666667777
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994 390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
..++..|..+++...+ +....-+-+..+...|+.+| ..|+.+++..++.
T Consensus 203 ~~Dyv~aekc~r~~~q--ip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQ--IPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhc--CccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 7777777777777665 11111222445666777666 3467777666654
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=17 Score=35.24 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=86.9
Q ss_pred HHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHH
Q 010994 107 LIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVP 186 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 186 (496)
.+.-.|+++.|..++-.++. ...+.+++.+.+.|-.++|+++- +|... -.....+.|+.+.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I~k-----~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPK-----EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccCch-----hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHH
Confidence 33445666666665544432 23345666666677666666542 22221 122334567777776
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994 187 DVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER 266 (496)
Q Consensus 187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 266 (496)
++..+.. +..-|..|.++....|++..|.+.|.... + |..|+-.+...|+-+....+-....+.
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR-D---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc-c---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 6655432 44567777777777777777777776665 2 333666666677666555555554444
Q ss_pred cccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 010994 267 LEQKDGIGYNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
|. .|...-+|...|+++++.+++.
T Consensus 722 g~------~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 722 GK------NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred cc------cchHHHHHHHcCCHHHHHHHHH
Confidence 42 2233345666777777777765
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.45 E-value=11 Score=32.83 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994 241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLE 298 (496)
Q Consensus 241 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 298 (496)
+.....|..+|.+.+|..+.++..+-.+ .+...|-.++..+...|+--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344666667777777777766655443 55666666777777777655555555543
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=11 Score=33.35 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSG---NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA 385 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 385 (496)
+...++..-....+++.+...+-+++... ..|+...+ +.++ ++-.-+.++++.++..=++.|+-||..++..+++
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D 143 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMD 143 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchhhHHHHHH
Confidence 33444444444556666666666655331 12222222 2222 2223455566666666666677777777777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010994 386 GYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+.+.+++.+|.++.-.++.
T Consensus 144 ~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 144 SFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 77777777666666665554
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.35 E-value=20 Score=35.55 Aligned_cols=120 Identities=16% Similarity=0.009 Sum_probs=52.0
Q ss_pred hcCChHHHHHHHHHHHH----hcccCccchHHHHHHHHHhcC-----CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 010994 249 KANLIDKASDVLKKAEE----RLEQKDGIGYNFLISLYASLG-----NKSEVLRLWDLEKTACKRYINRDYITMLEALMK 319 (496)
Q Consensus 249 ~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (496)
...|.+.|+..|+.... .-..-+......+..+|.+.. +.+.|..++......+. |+.......+.-...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGT 339 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCC
Confidence 34556666666665544 000112334444555554432 34456666654444433 333222222211111
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH----hcCchhHHHHHHHHHHhcC
Q 010994 320 -LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC----NNGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 320 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~ 372 (496)
..+...|.++|....+.|.. + .+-.+..+|. ...+.+.|..++.+..+.|
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred ccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 23455666666666665532 1 1111111111 1234556666666666655
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.20 E-value=9 Score=31.28 Aligned_cols=20 Identities=10% Similarity=0.023 Sum_probs=9.8
Q ss_pred HHHhhcCChHHHHHHHHHhh
Q 010994 209 NSYGARSDLEGMEIILREME 228 (496)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~ 228 (496)
+.+...|+-++|..-|++..
T Consensus 167 Dill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 167 DILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred hHHHHcCchHHHHHHHHHHH
Confidence 34444555555555554444
No 309
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.97 E-value=26 Score=36.31 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHhCC--CCCCCcchhhhhhhHHHhhcCH--HHHHHHHHhchhcCCC--HHHHHH
Q 010994 63 GELQRIIRDLRKRKRFSQALEVSDWMNRKG--ICVFAPCDHAVQLDLIGRVHGF--LSAESYFSNLKDDEKT--YQTYGA 136 (496)
Q Consensus 63 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~--~~~~~~ 136 (496)
.-|..|+..|...|..++|++++.+..+.. ..+..++.+..+++.+.+.+.- +..+++-++.....|. ..++..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 357788888888888888888888887743 1222333444455555555544 5555555555444331 111111
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 010994 137 ------------LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYS 177 (496)
Q Consensus 137 ------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 177 (496)
.+-.|.+....+-+...++.+....-.++..-.+.++..|+
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 22233444444555555555544433334444455544444
No 310
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.94 E-value=13 Score=32.63 Aligned_cols=62 Identities=10% Similarity=0.215 Sum_probs=30.3
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTA-CKRYINRDYITMLEALMKLGEHEEAEKVLK 331 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (496)
++..+...++..++..+++..-.++++..... ++..|...|..+|......|+..-...+.+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 44444455555555555555555555533333 233444555555555555555554444443
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.83 E-value=7.9 Score=30.06 Aligned_cols=55 Identities=9% Similarity=-0.121 Sum_probs=35.2
Q ss_pred hccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC
Q 010994 74 KRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT 130 (496)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 130 (496)
..++++++..+++.|.--.+ -.+..-..-...+...|++++|..+|+.+.+..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP--~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRP--NLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCC--CccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 46777777777777776542 33334444455666777777777777777766554
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.75 E-value=2.8 Score=34.04 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCC-CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCH----HHHHH
Q 010994 62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTY----QTYGA 136 (496)
Q Consensus 62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ 136 (496)
+..|..++...- .+.+ +.....+.+...+..+ ...-....+...+...++++.|...++.......|. .+--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 345666666553 3333 4444444444443111 111222223566667777777777777666543332 12234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC
Q 010994 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN 196 (496)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (496)
|.......|.+|+|+.+++.....+. .......-.+++...|+-++|..-|+.....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55667777888888888777665532 12223344566777788888888888777764
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.43 E-value=24 Score=35.05 Aligned_cols=242 Identities=11% Similarity=-0.008 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHH-----HHhcCCCCcHHHHHHHHHH-------CCCCCChhhHHHHHHHHhhc
Q 010994 147 TDKALSHFRKMKEMGIALSTLTYNDIMCL-----YSKTGQYEKVPDVLTEMKA-------KNIFPDNFSYRICINSYGAR 214 (496)
Q Consensus 147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~ 214 (496)
...|.+.++...+.| +...-..+..+ +....|.+.|+.+|+.+.+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888877765 33333222222 3345688888888888866 44 223455566666653
Q ss_pred C-----ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHhcccCccchHHHHHHHHH--h
Q 010994 215 S-----DLEGMEIILREMESQPHIVLDWSTYASAAHFYIK---ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYA--S 284 (496)
Q Consensus 215 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~--~ 284 (496)
. +.+.|..++.... ..|. |+.... +..++.. ..+...|.++|....+.|. +...-+..++.... .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA-~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAA-ELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCccccHHHHHHHHHHHH-hcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence 2 5677888888887 6665 665553 3333332 2467789999988877665 33333333322222 3
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-H---Hh----cC
Q 010994 285 LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG-Y---CN----NG 356 (496)
Q Consensus 285 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~----~g 356 (496)
..+.+.|..+++.....+. +...--...+..+.. ++.+.+.-.+..+...|.. ...+-...+.. . .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 4477888888887777663 332222233333444 6777777666666665533 22211111111 0 11 12
Q ss_pred chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 010994 357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA----GKTERGFQCMKAALS 405 (496)
Q Consensus 357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~ 405 (496)
+.+.+...+.+....| +......+...|... .+++.|...|..+..
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~ 503 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASE 503 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH
Confidence 4556666776666655 455555555555443 347778777777765
No 314
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.19 E-value=6.9 Score=32.91 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=12.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 010994 317 LMKLGEHEEAEKVLKEWELSG 337 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~ 337 (496)
.+..+++.+|.++|+++....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666665543
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.84 E-value=5.8 Score=31.89 Aligned_cols=117 Identities=11% Similarity=0.144 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhcCCCCCHhHHHHHHHHH---HhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccC--
Q 010994 358 VQNAEAILEDLVEKGKATTPNSWAVVAAGY---FDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEG-- 431 (496)
Q Consensus 358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-- 431 (496)
++.|.+..+.-...++. |...++.-..++ ++..+..++.+++++++..+.+-..+.|+. .++..+..++...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 34455555554444433 444433333333 333333344444444444332223377775 57777777765543
Q ss_pred --CHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHhCC
Q 010994 432 --SVQDVEAFVAALRTV------IPMNRQMYHAFIKANIRNGKGVDELLDSMKADG 479 (496)
Q Consensus 432 --~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~g 479 (496)
+..+|..+|++.... ..|+...|+.-+....+ |-++..+..+++
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k----ap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK----APELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT----HHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh----hHHHHHHHHHHH
Confidence 344455555544331 46777778777766643 455555554443
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.69 E-value=3.6 Score=36.10 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 010994 145 RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK 195 (496)
Q Consensus 145 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (496)
-+.++++.++..=...|+-||..+++.+|+.+.+.+++..|..+...|...
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 356677777777777788888888888888888888888777777666654
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.45 E-value=1.9 Score=38.24 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=33.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010994 385 AGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAAL 443 (496)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 443 (496)
.-|.++|.+++|+.+|.+.+. ..| |..++..-..+|.+..++..|+.-....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia-------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA-------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc-------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 346777777777777777654 445 6666666666777776666666554443
No 318
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=14 Score=31.12 Aligned_cols=18 Identities=0% Similarity=0.001 Sum_probs=10.0
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010994 388 FDAGKTERGFQCMKAALS 405 (496)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~ 405 (496)
...+++.+|+.+|++...
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666665554
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.28 E-value=21 Score=32.91 Aligned_cols=65 Identities=14% Similarity=-0.042 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK---DGIGYNFLISLYASLGNKSEVLRLWDLEKT 300 (496)
Q Consensus 236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 300 (496)
...++..++..+-+.|.++.|...+..+....... ++.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455556666666666666666666655433211 223333344555556666666666665444
No 320
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.21 E-value=4.8 Score=28.40 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404 (496)
Q Consensus 360 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 404 (496)
++.+-++.+...+..|++....+-+.+|-+.+++..|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555556666666666666666666666666665544
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.20 E-value=1.4 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 378 NSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+++.+...|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777766
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.10 E-value=31 Score=34.72 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=11.9
Q ss_pred HHHHHHhccChhHHHHHHHHHHh
Q 010994 68 IIRDLRKRKRFSQALEVSDWMNR 90 (496)
Q Consensus 68 li~~~~~~~~~~~a~~~~~~~~~ 90 (496)
|+..|...+++..|+.++-...+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHccChHHHHHHHHhccC
Confidence 55555555555555555444433
No 323
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.50 E-value=12 Score=29.12 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=58.4
Q ss_pred CCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhCC---CcHHHHHHHHHhCC
Q 010994 411 KGWKPDPK--VITSILSKLGDEGSVQDVEAFVAALRTV------IPMNRQMYHAFIKANIRNG---KGVDELLDSMKADG 479 (496)
Q Consensus 411 ~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g---~~a~~~~~~m~~~g 479 (496)
.+..++.. ..++++.-....++......+++.+... ...+...|..++.+.++.. --+..+|+-|++.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 44555542 4566776666667777777777766432 1345567888888886665 35667788888878
Q ss_pred CCCChhHHHHHHhhhcC
Q 010994 480 IDEDEETKEILVCTMEK 496 (496)
Q Consensus 480 ~~p~~~t~~~l~~~~~k 496 (496)
.++++.-|..++.++.|
T Consensus 111 ~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALR 127 (145)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 88888888888887754
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=87.37 E-value=17 Score=30.78 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHhCC-CcHHHHHHHHHhCCCCCChh
Q 010994 449 MNRQMYHAFIKANIRNG-KGVDELLDSMKADGIDEDEE 485 (496)
Q Consensus 449 ~~~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g~~p~~~ 485 (496)
|.+.....++..|.+.. ++|.+++.++-+.|+.|...
T Consensus 237 PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 44444444444444444 44444444444444444443
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.16 E-value=1.2 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+|..+...|...|++++|...|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777777665
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.66 E-value=2.4 Score=22.86 Aligned_cols=31 Identities=6% Similarity=0.036 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
..+..+...+...|++++|.+.|++.....|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3466677788888899999888887766544
No 327
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.64 E-value=29 Score=32.86 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=68.3
Q ss_pred HHHhcCCHHHHHHHHHHHHh---cCCCCC-----cccHHHHHHHHHhcCchhHHHHHHHHHHh-------cCCCCCH---
Q 010994 316 ALMKLGEHEEAEKVLKEWEL---SGNSYD-----TRIPNAVIIGYCNNGLVQNAEAILEDLVE-------KGKATTP--- 377 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~--- 377 (496)
.+.-.|++.+|.+++...-- .|...+ -..||.+...+.+.|.+..+..+|.+..+ .|.+|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34567888888887754321 121111 12345566566667777777666666553 3444321
Q ss_pred --------hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994 378 --------NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429 (496)
Q Consensus 378 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 429 (496)
.+|| ....|...|++-.|.++|.++.. -+..++..|..+..+|.-
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~------vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH------VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH------HHhcCcHHHHHHHHHHHH
Confidence 2333 34567788999999999999987 456788889999888853
No 328
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.56 E-value=21 Score=31.10 Aligned_cols=122 Identities=14% Similarity=0.033 Sum_probs=81.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhc-----ccCccc--------hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhH
Q 010994 244 AHFYIKANLIDKASDVLKKAEERL-----EQKDGI--------GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY 310 (496)
Q Consensus 244 i~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 310 (496)
.+.+.-..|+..|++..++-.+.- ...+.. ....=|++++..++|.+++...-+.-+...+......
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 344455667777777776654321 111111 1233478899999999988766544443334556677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-----cCchhHHHHHH
Q 010994 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN-----NGLVQNAEAIL 365 (496)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~ 365 (496)
..-|-.|++.++...+.++-.......-.-+..-|.+++..|.. .|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 77788899999999999999888875333345558877777664 69999998876
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.49 E-value=2.2 Score=24.43 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 132 QTYGALLNCYVRQRQTDKALSHFRKMK 158 (496)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 158 (496)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456777777777788888877777754
No 330
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.02 E-value=12 Score=27.92 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010994 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIK 459 (496)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 459 (496)
..+-+..... ..+-|++.....-+++|.+.+|+..|.++|+.++...++....|-.+++
T Consensus 68 vrkglN~l~~-----yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFD-----YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhc-----cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3444555554 6789999999999999999999999999999998877666666766654
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.78 E-value=6.6 Score=31.60 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH---hccCCHHHHHHH-------HHHHHhcCCCCHHHHHHHHHHHHh
Q 010994 394 ERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL---GDEGSVQDVEAF-------VAALRTVIPMNRQMYHAFIKANIR 463 (496)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~-------~~~~~~~~~~~~~~~~~l~~~~~~ 463 (496)
+.|.+.++.... .-+.|...++.-..++ ++.....++.++ |++.....|....++..++.+|..
T Consensus 8 E~ark~aea~y~------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 8 EHARKKAEAAYA------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHH------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 445555555443 2233445444444333 333333344444 444444466667899999999988
Q ss_pred CC-------------CcHHHHHHHHHhCCCCCChhHHHHHHhhhc
Q 010994 464 NG-------------KGVDELLDSMKADGIDEDEETKEILVCTME 495 (496)
Q Consensus 464 ~g-------------~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 495 (496)
.+ +.|.+.|++..+ ..|+..+|+.-+....
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 77 245555666555 6799999988766543
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.58 E-value=8.3 Score=31.75 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC---CCCCChhhHHHHHHHHhhcCChHHH
Q 010994 148 DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK---NIFPDNFSYRICINSYGARSDLEGM 220 (496)
Q Consensus 148 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a 220 (496)
++|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554444434444444444443 34455555555544432 1234445555555555555554443
No 333
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.52 E-value=3.3 Score=22.43 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEE 265 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~ 265 (496)
|..+..+|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444433
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.85 E-value=2.1 Score=22.91 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=13.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcC
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVI 447 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~ 447 (496)
+..++.+.|++++|.+.|+.+.+..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3444455555666666555555443
No 335
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.80 E-value=54 Score=34.21 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcccCc---cchHHHHHHHHHhcCCH--HHHHHHHHHHHhhcCCCCchhHH---
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEERLEQKD---GIGYNFLISLYASLGNK--SEVLRLWDLEKTACKRYINRDYI--- 311 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~--- 311 (496)
|..|+..|...|+.++|++++.+..+..-..| ...+..+++-+.+.+.. +-++++-+......+......+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 66788888888888888888887765210011 12233344444444433 44444444333332211111111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 010994 312 ---------TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN 354 (496)
Q Consensus 312 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (496)
..+-.|......+.+..+++.+....-.++....+.++..|++
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233345566777777888877765545566667777777764
No 336
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.69 E-value=38 Score=32.39 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (496)
.-+-.-|....++++|++++..+.+.+
T Consensus 209 qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 209 QDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 333344555555555555555555443
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.57 E-value=14 Score=30.37 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=25.6
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
++.+.+.++.|+.-..+.++.++. .......-..+|.+...+++|++-|+++++
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344445555555555555544322 222222233445555555666665655554
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.52 E-value=10 Score=31.58 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC--CCCHhHHHHHHHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK--ATTPNSWAVVAAG 386 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~ 386 (496)
|....++.+.+.+.+.+++.....-.+.. +.|...-..+++.||-.|++++|..-++-.-+... .+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666777778888887777766653 23555556777788888888888776666554322 2334456555543
No 339
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.47 E-value=87 Score=36.38 Aligned_cols=153 Identities=10% Similarity=-0.017 Sum_probs=91.6
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhh-HHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcC
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLD-LIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQR 145 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 145 (496)
+|..+-.+.+.+.+|+-.++.-..........+.+...+. .|+..++.|....+... ....|+ .+. -|......|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s--l~~-qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS--LYQ-QILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc--HHH-HHHHHHhhc
Confidence 4444556778889999888884111100012233444444 88888988888777653 111232 233 344456679
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH-HHHHHHhhcCChHHHHHHH
Q 010994 146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR-ICINSYGARSDLEGMEIIL 224 (496)
Q Consensus 146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~ 224 (496)
++..|...|+.+.+.+. +...+++-++......|.++.+....+-...+ ..+....++ .-+.+--+.+++|......
T Consensus 1464 ~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred cHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999988742 24667777777777777777776655544433 222222233 2334446677777666654
Q ss_pred H
Q 010994 225 R 225 (496)
Q Consensus 225 ~ 225 (496)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 4
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.40 E-value=53 Score=33.82 Aligned_cols=225 Identities=12% Similarity=0.024 Sum_probs=113.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChh-------HHHHHHH-HHHhcCCCCcHHHHHHHHHHC----CCCCChhhHHHHHH
Q 010994 142 VRQRQTDKALSHFRKMKEMGIALSTL-------TYNDIMC-LYSKTGQYEKVPDVLTEMKAK----NIFPDNFSYRICIN 209 (496)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~ 209 (496)
....++++|..+..++...-..|+.. .|+.+-. .....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45688899988888875542222221 3444433 234567888888887776654 12234455666667
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHH---HH--HHHHHhcCCh--HHHHHHHHHHHHhcc-cC-----ccchHH
Q 010994 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYA---SA--AHFYIKANLI--DKASDVLKKAEERLE-QK-----DGIGYN 276 (496)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~~~~--~~a~~~~~~m~~~~~-~~-----~~~~~~ 276 (496)
+..-.|+++.|..+..... +..-.-+...+. .+ ...+...|+. .+....|........ .. -..++.
T Consensus 506 a~~~~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777899999888876665 221112222222 22 1334555633 333334443322211 11 123344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhhcCCCCchh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH----HHH-
Q 010994 277 FLISLYASL-GNKSEVLRLWDLEKTACKRYINRD--YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP----NAV- 348 (496)
Q Consensus 277 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l- 348 (496)
.+..++.+. +...++..-++.-....+.+-... +..++......|+.++|...++++......++..++ ...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 112222222221111111111111 235677778889999999988888765433322221 111
Q ss_pred -HHHHHhcCchhHHHHHHHH
Q 010994 349 -IIGYCNNGLVQNAEAILED 367 (496)
Q Consensus 349 -~~~~~~~g~~~~a~~~~~~ 367 (496)
+......|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 1223356777777766655
No 341
>PRK09687 putative lyase; Provisional
Probab=83.57 E-value=32 Score=30.60 Aligned_cols=136 Identities=15% Similarity=-0.059 Sum_probs=58.5
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcccCccchHHHH
Q 010994 200 DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN-LIDKASDVLKKAEERLEQKDGIGYNFL 278 (496)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l 278 (496)
+..+-...+.++++.++. .+...+-.+. +. ++..+-...+.++.+.+ +...+...+..+.. .++..+....
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L-~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLL-KD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHh-cC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 334444445555555543 3333333333 11 22333333344444332 12334444443332 2445555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY 352 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (496)
+.++.+.|+. .++..+-.....+. .....+.++...|+. +|...+..+.+. .||..+-...+.++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 5556555553 33333332333211 223455566666663 455555555543 23444444444443
No 342
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.38 E-value=43 Score=31.96 Aligned_cols=89 Identities=11% Similarity=-0.061 Sum_probs=61.3
Q ss_pred cHHHHHHHHHc--CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc-CHHHHHHHHH
Q 010994 46 IEPELDNWVKN--GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH-GFLSAESYFS 122 (496)
Q Consensus 46 ~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~ 122 (496)
..++++...+. ...-|+..|...+..+-+.+.+.+...+|.+|...++ .+|+.+.....-.-..+ +++.|..+|.
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp--~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP--NNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 34444444433 4555888999999888888889999999999998763 55666555544333333 3888888888
Q ss_pred hchhcCCC-HHHHHH
Q 010994 123 NLKDDEKT-YQTYGA 136 (496)
Q Consensus 123 ~~~~~~~~-~~~~~~ 136 (496)
...+..|+ +..|-.
T Consensus 165 rgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKE 179 (568)
T ss_pred HHhhcCCCChHHHHH
Confidence 88877774 555543
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.35 E-value=11 Score=31.34 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC----HHHHHHHHH
Q 010994 65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT----YQTYGALLN 139 (496)
Q Consensus 65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~li~ 139 (496)
.+.-+..+.+.++..+|+...++-.+..+ -+...-..++.++|-.|+++.|..-++-+....|+ ...|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455666677777777777766666542 34444555566666666666666666555544432 344444444
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.76 E-value=23 Score=27.64 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=31.5
Q ss_pred hcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 389 DAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT-SILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
..++.+++..++..+.- +.|+..-.. .-...+...|+|.+|.++|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrv-------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV-------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHH-------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 36777777777777754 555543222 1223456677788888888777664
No 345
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=81.57 E-value=61 Score=32.44 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=55.4
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHH-----------HHHHHHHHHHhcccCccchHHHHHHH
Q 010994 213 ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK-----------ASDVLKKAEERLEQKDGIGYNFLISL 281 (496)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-----------a~~~~~~m~~~~~~~~~~~~~~l~~~ 281 (496)
-.|++..+++....+- .|.-+-..+...+...|-.+. ...++-+... ..-.+...|..-+..
T Consensus 309 ~~~d~~~vL~~~~~~~------~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~-~L~s~~~lW~vai~y 381 (566)
T PF07575_consen 309 FEGDIESVLKEISSLF------DDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYAS-SLMSHHSLWQVAIGY 381 (566)
T ss_dssp HTS--GGGHHHHHHH--------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHH-HHHT-TTTHHHHHHH
T ss_pred HccCHHHHHHHHHHHc------cchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHH-HHhcCcchHHHHHHH
Confidence 3677777777766663 222233345555555554441 0000000000 111233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA 361 (496)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (496)
+...++.. ....+......+..+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+.-+.+.|+....
T Consensus 382 L~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v 457 (566)
T PF07575_consen 382 LSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLV 457 (566)
T ss_dssp HHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------
T ss_pred HHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHH
Confidence 43333221 44444445554545556666777778787877777777766654311 112233444444555555444
Q ss_pred HHHHHHHH
Q 010994 362 EAILEDLV 369 (496)
Q Consensus 362 ~~~~~~~~ 369 (496)
..+.+.+.
T Consensus 458 ~~i~~~ll 465 (566)
T PF07575_consen 458 TRIADRLL 465 (566)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44443333
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.34 E-value=37 Score=29.85 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKV 419 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 419 (496)
+.....|..+|.+.+|.++.++.+..++- +...|-.++..+...|+--++...++++.+......|+..+...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 44455566677777777777766665433 55666677777777777666666666655544444455554433
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.00 E-value=2.6 Score=21.36 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 010994 135 GALLNCYVRQRQTDKALSHFR 155 (496)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~ 155 (496)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445566666777777766654
No 348
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.82 E-value=1.2e+02 Score=35.38 Aligned_cols=116 Identities=15% Similarity=0.032 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010994 137 LLNCYVRQRQTDKALSHFRKM----KEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYG 212 (496)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 212 (496)
+..+-.+++.+..|...++.- ++.. -...-|..+...|...++++++..+...-.. .|+ ...-|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHH
Confidence 334444556666666666552 2110 0122233444466666666666555543111 111 223333445
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 213 ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK 262 (496)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 262 (496)
..|++..|...|+.+. +.+. +...+++-++......|.++.++...+-
T Consensus 1461 ~~g~~~da~~Cye~~~-q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLI-QKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred hhccHHHHHHHHHHhh-cCCC-ccccchhhHHHhhhcccchhHHHhhhcc
Confidence 5666666666666665 4432 3344555555555555555555444433
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.69 E-value=16 Score=31.75 Aligned_cols=87 Identities=11% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---
Q 010994 173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK--- 249 (496)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 249 (496)
|+++++.++|.+++...-+--+..-+.........|-.|.+.+....+.++-.......+- -+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHHHH
Confidence 4455555555555544433333211112223334444455555555555554443312111 122224444433332
Q ss_pred --cCChHHHHHHH
Q 010994 250 --ANLIDKASDVL 260 (496)
Q Consensus 250 --~~~~~~a~~~~ 260 (496)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 35555555554
No 350
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.49 E-value=37 Score=31.84 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcCCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQPH------IVLDWSTYASAAHFYIKANLIDKASDVLKKAE 264 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 264 (496)
.+...+++.++-.||+..|+++++.+..... +.-...+|..+.-+|.-.+++.+|.+.|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888889999999999887752111 11234556677888888999999999998864
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.49 E-value=16 Score=32.75 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc--
Q 010994 278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN-- 355 (496)
Q Consensus 278 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 355 (496)
-...|.+.|.+++|++.|.......+ -+..++..-..+|.+...+..|+.=.......+ ...+.+|++.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 45667888888888888876655544 466777777778888888777776665554431 2345555554
Q ss_pred -----CchhHHHHHHHHHHh
Q 010994 356 -----GLVQNAEAILEDLVE 370 (496)
Q Consensus 356 -----g~~~~a~~~~~~~~~ 370 (496)
|...+|.+-++..++
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLA 193 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHh
Confidence 344444444444444
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.36 E-value=6.1 Score=21.25 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKE 159 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 159 (496)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777888888877777654
No 353
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.11 E-value=1.3 Score=34.50 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhc
Q 010994 239 TYASAAHFYIKA 250 (496)
Q Consensus 239 ~~~~li~~~~~~ 250 (496)
..+.++..|++.
T Consensus 44 ~~~~L~~ly~~~ 55 (143)
T PF00637_consen 44 LHTLLLELYIKY 55 (143)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHhc
Confidence 333333333333
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.82 E-value=4.5 Score=21.51 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=13.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh
Q 010994 243 AAHFYIKANLIDKASDVLKKAEER 266 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m~~~ 266 (496)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555556666666666665543
No 355
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=79.78 E-value=54 Score=30.77 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010994 381 AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP--DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI 458 (496)
Q Consensus 381 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 458 (496)
..|+.-|...|+..+|.++.++. |++. ....+.+++.+.-+.|+-..-..++ +..+.....|-+.|-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL--------gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLL---k~cf~sglIT~nQMt 581 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL--------GMPFFHHEVVKKALVMVMEKKGDSTMILDLL---KECFKSGLITTNQMT 581 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHhcCcHHHHHHHH---HHHHhcCceeHHHhh
Confidence 45667788888888888888875 4432 3356778888888888766444444 444446667777888
Q ss_pred HHHHhCC----------CcHHHHHHHHHhCCCCC
Q 010994 459 KANIRNG----------KGVDELLDSMKADGIDE 482 (496)
Q Consensus 459 ~~~~~~g----------~~a~~~~~~m~~~g~~p 482 (496)
++|.+-. ..|.+.|+...+.+..-
T Consensus 582 kGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~ 615 (645)
T KOG0403|consen 582 KGFERVYDSLPDLSLDVPNAYEKFERYVEECFQN 615 (645)
T ss_pred hhhhhhhccCcccccCCCcHHHHHHHHHHHHHHc
Confidence 8887754 35777777777766553
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.61 E-value=21 Score=34.54 Aligned_cols=101 Identities=12% Similarity=0.061 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 314 (496)
|-|...|...-.+--.|+...|...+.......+....+....+.+.+.+.|-...|-.++.+...... ..+-++..+.
T Consensus 605 p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g 683 (886)
T KOG4507|consen 605 PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLG 683 (886)
T ss_pred CeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcc
Confidence 444433333333333466666666665554433333344455555555555655566666554444332 3344555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 010994 315 EALMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~ 336 (496)
+++....+++.|.+.|++..+.
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhc
Confidence 6666666666666666666655
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.39 E-value=21 Score=25.70 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=17.8
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 221 EIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAE 264 (496)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 264 (496)
.+-++.+. ..+..|+..+..+.+.+|-+.+++.-|.++|+-++
T Consensus 30 rrglN~l~-~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLF-GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHT-TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHh-ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344443 44444444444444444444444444444444443
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.80 E-value=61 Score=30.77 Aligned_cols=124 Identities=12% Similarity=-0.049 Sum_probs=90.2
Q ss_pred HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhc-CCCHHHHHHHHHHHHhcCCH
Q 010994 69 IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD-EKTYQTYGALLNCYVRQRQT 147 (496)
Q Consensus 69 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 147 (496)
|.--...|+.-.|.+-+....++. +-.|.............|.++.+.+.+...... .....+...++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 444456688877766555555543 356777777778888999999999988877654 34456778889999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 010994 148 DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK 195 (496)
Q Consensus 148 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (496)
++|..+-+.|....+. +...........-..|-++++...+++...-
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9999999999887766 5555554444445567778888888777653
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.37 E-value=63 Score=30.70 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhCC
Q 010994 451 RQMYHAFIKANIRNG 465 (496)
Q Consensus 451 ~~~~~~l~~~~~~~g 465 (496)
...|..++.-....+
T Consensus 348 ~~iY~~~i~~~i~~~ 362 (413)
T PHA02875 348 AHFYKYLLKEAADIA 362 (413)
T ss_pred eehHHHHHHHHHHHH
Confidence 344555555544443
No 360
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.16 E-value=48 Score=28.74 Aligned_cols=282 Identities=11% Similarity=0.070 Sum_probs=169.6
Q ss_pred HCCCCCChhHHHHHHHHH-HhcCCCCcHHHHHHHHHHCCCCCChhh---HHHHHHHHhhcCChHHHHHHHHHhhc----C
Q 010994 159 EMGIALSTLTYNDIMCLY-SKTGQYEKVPDVLTEMKAKNIFPDNFS---YRICINSYGARSDLEGMEIILREMES----Q 230 (496)
Q Consensus 159 ~~g~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~----~ 230 (496)
+.+-.||+..=|..-.+- .+..++++|+.-|++..+....-.... ...++....+.|++++....+.++.. .
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 345567777655433321 234478899999999887632223333 34578889999999999999988861 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-ccCccc----hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 010994 231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL-EQKDGI----GYNFLISLYASLGNKSEVLRLWDLEKTACKRY 305 (496)
Q Consensus 231 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 305 (496)
..-.-+....|.++..-+.+.+.+--.++|+.-.+.- -..+.. |-+.+...|...|.+....++++++...+...
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1111345667888888888888888888877543321 112333 34567888999999999999999888877632
Q ss_pred Cc-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcccHHHHHH----HHHhcCchhHHHHHH-HHH
Q 010994 306 IN-----------RDYITMLEALMKLGEHEEAEKVLKEWELSG-NSYDTRIPNAVII----GYCNNGLVQNAEAIL-EDL 368 (496)
Q Consensus 306 ~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~----~~~~~g~~~~a~~~~-~~~ 368 (496)
+. ..|..=|..|....+-.+-..++++..... --|.+.+...+-. ...+.|++++|-.-| +..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 22 346666777877777777778888766322 2345544433322 234678888887544 333
Q ss_pred H---hcCCCC--CHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994 369 V---EKGKAT--TPNSWAVVAAGYFDAGK--TERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 369 ~---~~~~~p--~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
. +.|-+. ...-|-.+...+.+.|- ++. +++. ...-.|.....+.++.+|.. ++..+-+++++
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAK-----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAK-----PYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccC-----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 3 233221 11235555555555541 110 0010 01233555667788888754 67777777776
Q ss_pred HHHhcCCCCH
Q 010994 442 ALRTVIPMNR 451 (496)
Q Consensus 442 ~~~~~~~~~~ 451 (496)
.-.+.+-.|+
T Consensus 328 ~~~~~IM~Dp 337 (440)
T KOG1464|consen 328 SNRSNIMDDP 337 (440)
T ss_pred hhhccccccH
Confidence 5544433333
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.34 E-value=11 Score=25.62 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=32.1
Q ss_pred hcCChHHHHHHHHHHHHhhhcCCCC-CCCH-HHHHHHHHHHhccCCHHHHHHHH
Q 010994 389 DAGKTERGFQCMKAALSVYVEGKGW-KPDP-KVITSILSKLGDEGSVQDVEAFV 440 (496)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 440 (496)
...+.++|+..|..+++ .-. .|+. .++..++.+++..|++.++.++-
T Consensus 18 ~~~~~~~Al~~W~~aL~-----k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALE-----KITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHh-----hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888887 222 2222 36667778888888888877653
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.20 E-value=93 Score=31.52 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=31.7
Q ss_pred hcCchhHHHHHHHHHHhcCC-CCC-------HhHHHHHHHHHHhcCChHHHHHHHH
Q 010994 354 NNGLVQNAEAILEDLVEKGK-ATT-------PNSWAVVAAGYFDAGKTERGFQCMK 401 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~-~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 401 (496)
-.+++..|...+..+.+... .|+ +..+....-.+...|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46889899999998875421 111 2223333334456799999999998
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.99 E-value=6.3 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=17.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 010994 137 LLNCYVRQRQTDKALSHFRKMKEM 160 (496)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~ 160 (496)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556777777777777777777654
No 364
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.65 E-value=45 Score=27.60 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=70.0
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHH
Q 010994 352 YCNNGLVQNAEAILEDLVEKGKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSK 426 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~ 426 (496)
+...|++++|..-|...++.-+... ...|..-..++.+.+.++.|+.-..++++ +.|+. ..+..-..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-------l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-------LNPTYEKALERRAEA 177 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-------cCchhHHHHHHHHHH
Confidence 5668899999998888887532211 23456666788899999999999999887 55543 344444568
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994 427 LGDEGSVQDVEAFVAALRTVIPMNRQMYH 455 (496)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 455 (496)
|.+..++++|..-++.+....|.....-.
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 88889999999999988876555444333
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.40 E-value=30 Score=29.43 Aligned_cols=81 Identities=11% Similarity=-0.061 Sum_probs=45.8
Q ss_pred cCchhHHHHHHHHHHhcCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH-HHHHHHhccCC
Q 010994 355 NGLVQNAEAILEDLVEKGKATTPNS-WAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT-SILSKLGDEGS 432 (496)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~ 432 (496)
..+++.|...|.+.+. +.|+..+ |+.=+..+.+..+++.+.+--.++++ +.||..--. .+..+......
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq-------l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-------LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-------cChHHHHHHHHHHHHHHhhcc
Confidence 3456666664444433 6666643 45556666666667766666666655 556554322 33344455566
Q ss_pred HHHHHHHHHHHH
Q 010994 433 VQDVEAFVAALR 444 (496)
Q Consensus 433 ~~~a~~~~~~~~ 444 (496)
+++|...+.+..
T Consensus 94 ~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 94 YDEAIKVLQRAY 105 (284)
T ss_pred ccHHHHHHHHHH
Confidence 666666666553
No 366
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.32 E-value=78 Score=30.24 Aligned_cols=113 Identities=14% Similarity=-0.025 Sum_probs=78.6
Q ss_pred HHhcCchhHHHHHHHHHH---hcCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhh--hcCCCCCCCH----
Q 010994 352 YCNNGLVQNAEAILEDLV---EKGKATT-----PNSWAVVAAGYFDAGKTERGFQCMKAALSVY--VEGKGWKPDP---- 417 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~---~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~p~~---- 417 (496)
+--.|++.+|.+++...- +.|...+ -..||.|...+.+.|.+.-+..+|.++++.+ --..|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445799999999876543 2221112 2346777777888889999999998888511 1123555543
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 418 -------KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 418 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
.+|++ .-.|...|+.-.|.+.|......+..++..|--|..+|....
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 12332 235678899999999999998888999999999999987643
No 367
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.07 E-value=24 Score=34.29 Aligned_cols=132 Identities=11% Similarity=-0.045 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAA 403 (496)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 403 (496)
+.+..++..|. ....|-..+.|...--+.-.|+...|.+.+.......+.-..+....+.+...+.|-..+|-.++.+.
T Consensus 590 e~~~~~~~~~~-~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAIN-KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhc-CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 34444444443 22333333333333333446888888888877665433323445666777778888888888888888
Q ss_pred HHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010994 404 LSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANI 462 (496)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 462 (496)
+. . ....+-++..+.+++.-..+++.|.+.|+...+..+.++.+-+.|...-|
T Consensus 669 l~-----~-~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LA-----I-NSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred Hh-----h-cccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 76 2 24455678888888888899999999999887777777777666655444
No 368
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.03 E-value=1.1e+02 Score=31.72 Aligned_cols=258 Identities=14% Similarity=0.139 Sum_probs=124.4
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhh----hhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHH
Q 010994 66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAV----QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCY 141 (496)
Q Consensus 66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 141 (496)
+.+=..|.+.|++++|++.-+.- |+.... ..+.+.+.+++..|-+++.+.. ..|..+.--+
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~------~~FEEVaLKF 426 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETL------SSFEEVALKF 426 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh------hhHHHHHHHH
Confidence 33455677888888888774322 333333 3466667778888888877653 3445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHH-----HHHHHHHH-hcCCCC----cHHHHHHHH--------HH-CCCCCChh
Q 010994 142 VRQRQTDKALSHFRKMKEMGIALSTLTY-----NDIMCLYS-KTGQYE----KVPDVLTEM--------KA-KNIFPDNF 202 (496)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~-----~~l~~~~~-~~~~~~----~a~~~~~~m--------~~-~~~~p~~~ 202 (496)
....+.+ +++.|-.=+-..++|...+- +-++..|. +.++.+ ++.+-++.- .. ....-+..
T Consensus 427 l~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~ 505 (911)
T KOG2034|consen 427 LEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDEL 505 (911)
T ss_pred HhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 5555555 44433221111233333222 12233222 222222 222222111 10 00111222
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLY 282 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 282 (496)
.+.++...+...|+.+....+-.-+. .|..++..+...+.+++|++++..- .+....--..-.+
T Consensus 506 nretv~~l~~~~~~~e~ll~fA~l~~----------d~~~vv~~~~q~e~yeeaLevL~~~------~~~el~yk~ap~L 569 (911)
T KOG2034|consen 506 NRETVYQLLASHGRQEELLQFANLIK----------DYEFVVSYWIQQENYEEALEVLLNQ------RNPELFYKYAPEL 569 (911)
T ss_pred hHHHHHHHHHHccCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhc------cchhhHHHhhhHH
Confidence 23344455556677776666555554 2555788888888888888887652 1121111111111
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh
Q 010994 283 ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG---EHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ 359 (496)
Q Consensus 283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (496)
....+.+....|..+ +...+..-...++..+.+.+ ....+...++-....-..-++..+|.++..|++..+-+
T Consensus 570 -i~~~p~~tV~~wm~~---~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 570 -ITHSPKETVSAWMAQ---KDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred -HhcCcHHHHHHHHHc---cccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 112333333333222 22233344445555555542 34445555544443333446777888888877654433
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.89 E-value=6.4 Score=20.07 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.|..+...+...|+++.|...++..++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345556666666666677666666654
No 370
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=73.95 E-value=51 Score=29.71 Aligned_cols=52 Identities=8% Similarity=0.104 Sum_probs=25.8
Q ss_pred HHhhcCHHHHHHHHHhchhc-----CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010994 108 IGRVHGFLSAESYFSNLKDD-----EKTYQTY--GALLNCYVRQRQTDKALSHFRKMKE 159 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~-----~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 159 (496)
..+.++.++|.++++++.+. .|+...| ......+...|+..++.+++++.++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444555565555555433 2443333 2334444455566666655555544
No 371
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=73.69 E-value=53 Score=27.58 Aligned_cols=64 Identities=17% Similarity=0.039 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994 272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (496)
+.+||-+.--+...|+++.|.+.|+...+..+.-+-...|. .-++.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhc
Confidence 35566666666677777777777776555444222111121 11222346666666655555544
No 372
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.47 E-value=1.1e+02 Score=31.03 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT 179 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 179 (496)
++|-.|.++|++++|.++..+.... .......+-..+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3566677788888888777544433 333455566666666654
No 373
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.40 E-value=28 Score=27.06 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhHHHHHHHHHHhcCC-CCcHHHHHHHHHHCCCCCChhhHHH
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGI-----ALSTLTYNDIMCLYSKTGQ-YEKVPDVLTEMKAKNIFPDNFSYRI 206 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 206 (496)
..|.++.-....+++...+.+++.+..... ..+..+|++++.+..+..- ---+..+|+.|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356677777777777777777776632210 1245567777777654443 2345666777776666777777777
Q ss_pred HHHHHhhc
Q 010994 207 CINSYGAR 214 (496)
Q Consensus 207 li~~~~~~ 214 (496)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766543
No 374
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=73.10 E-value=99 Score=33.10 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhC-CC-CCCCcchhhhhhhHHH-hhcCHHHHHHHHHhchh
Q 010994 66 QRIIRDLRKRKRFSQALEVSDWMNRK-GI-CVFAPCDHAVQLDLIG-RVHGFLSAESYFSNLKD 126 (496)
Q Consensus 66 ~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~ 126 (496)
-..++.+...++|.+|..+.+.-.-. +. ...+|..+...+..+. +.++.+.---++..+.+
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ 761 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRN 761 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 45566777889999888775543321 10 1234555555444433 33444433333344433
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.77 E-value=10 Score=19.81 Aligned_cols=29 Identities=7% Similarity=0.274 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010994 431 GSVQDVEAFVAALRTVIPMNRQMYHAFIK 459 (496)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 459 (496)
|+.+.|..+|+.+....|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777777777666666666666554
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.72 E-value=15 Score=24.90 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=33.5
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 354 NNGLVQNAEAILEDLVEKGKATTP--NSWAVVAAGYFDAGKTERGFQCMKA 402 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 402 (496)
...+.++|+..|....+.-..|.. .++..++.+|+..|++.+++++-..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888887765443322 3567777888888888877665443
No 377
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.69 E-value=1.2e+02 Score=30.75 Aligned_cols=410 Identities=12% Similarity=0.082 Sum_probs=200.1
Q ss_pred hhHHHHHHHHH-hccChhHHHHHHHHHHhCCCCCCCcch-----hhhhhhHHHhhcCHHHHHHHHHhchhcC---C-C--
Q 010994 63 GELQRIIRDLR-KRKRFSQALEVSDWMNRKGICVFAPCD-----HAVQLDLIGRVHGFLSAESYFSNLKDDE---K-T-- 130 (496)
Q Consensus 63 ~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~-~-- 130 (496)
.++-.+...+. ...+++.|...+......... .+-.. ...++..+.+.+... |...+++..+.- + +
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 34555666665 678899999999977654411 11111 112345555555555 888888765542 1 2
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCChhHHHHHHHHHH--hcCCCCcHHHHHHHHHHCCC-------
Q 010994 131 YQTYGAL-LNCYVRQRQTDKALSHFRKMKEMG---IALSTLTYNDIMCLYS--KTGQYEKVPDVLTEMKAKNI------- 197 (496)
Q Consensus 131 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~------- 197 (496)
...|.-+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+++.+..+++.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2233333 333334489999999998875432 2334444555555544 45567778888877744321
Q ss_pred --CCChhhHHHHHHHH--hhcCChHHHHHHHHHhh------cCCC----------CC-------------CCH-------
Q 010994 198 --FPDNFSYRICINSY--GARSDLEGMEIILREME------SQPH----------IV-------------LDW------- 237 (496)
Q Consensus 198 --~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~------~~~~----------~~-------------~~~------- 237 (496)
.|-..+|..+++.+ ...|+++.+...++++. .+.. ++ +..
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 23455666676654 45677666665554443 0110 00 000
Q ss_pred --HHHHHHHH--HHHhcCChHHHHHHHHHHHHh----c----ccCc--------cchHHHHHH---------HHHhcCCH
Q 010994 238 --STYASAAH--FYIKANLIDKASDVLKKAEER----L----EQKD--------GIGYNFLIS---------LYASLGNK 288 (496)
Q Consensus 238 --~~~~~li~--~~~~~~~~~~a~~~~~~m~~~----~----~~~~--------~~~~~~l~~---------~~~~~~~~ 288 (496)
.....++. ..+..+..++|.+++++..+. . ..++ ...|...+. ..+-.+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 00111111 223345554666666554221 1 1111 122222222 23457889
Q ss_pred HHHHHHHHHHHhhcCCC-C-----chhHHH--HHHHHHhcCCHHHHHHHHH--------HHHhcCCCCCcccHHHH--HH
Q 010994 289 SEVLRLWDLEKTACKRY-I-----NRDYIT--MLEALMKLGEHEEAEKVLK--------EWELSGNSYDTRIPNAV--II 350 (496)
Q Consensus 289 ~~a~~~~~~~~~~~~~~-~-----~~~~~~--l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~ 350 (496)
..|....+.+....... + ...+.. ..-.+-..|+.+.|...|. .....+...+..++..+ +-
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 99999999887654321 1 112222 2223345799999999997 44445444444444321 11
Q ss_pred HHHhcC--chhH--HHHHHHHHHhc-CCCC--CHhHHHHHH-HHHHhcC--ChHHHHHHHHHHHHhhhcCCCCCC-CHHH
Q 010994 351 GYCNNG--LVQN--AEAILEDLVEK-GKAT--TPNSWAVVA-AGYFDAG--KTERGFQCMKAALSVYVEGKGWKP-DPKV 419 (496)
Q Consensus 351 ~~~~~g--~~~~--a~~~~~~~~~~-~~~p--~~~~~~~l~-~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p-~~~~ 419 (496)
.+...+ ..++ +..+++.+... .-.| +..++..++ .++.... ...++-..+.+.++......+..- -..+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 222222 2333 66777766542 1122 333444443 3332222 223566666655552100011111 1122
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh----cCCCCHHHHHHHHH-----HHHhCC--CcHHHHHHHH
Q 010994 420 ITSILSKLGDEGSVQDVEAFVAALRT----VIPMNRQMYHAFIK-----ANIRNG--KGVDELLDSM 475 (496)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~-----~~~~~g--~~a~~~~~~m 475 (496)
++.+...+. .|+..+.......... ...-....|..+.. .|...| ++|.....+.
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 332333333 6888776665553322 11123455644433 355667 5666655544
No 378
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.63 E-value=14 Score=22.30 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=25.8
Q ss_pred HHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhh
Q 010994 461 NIRNG--KGVDELLDSMKADGIDEDEETKEILVCT 493 (496)
Q Consensus 461 ~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~ 493 (496)
..+.| .++..++++|.+.|+..++..+..+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34455 7788889999999999888888877754
No 379
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.32 E-value=28 Score=24.18 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 010994 81 ALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKAL 151 (496)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 151 (496)
+.++++.+.++++ ++.+....+-..-...|+.+.|.++++.++ .+|+ .|...+.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i--lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL--LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc--HHHHHHHHHHHcCchhhhh
Confidence 4566677777664 344444443333335567777777777777 4443 4566777777777655543
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.14 E-value=8.5 Score=22.70 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=18.4
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcC
Q 010994 348 VIIGYCNNGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (496)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777888888888887777543
No 381
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.34 E-value=69 Score=27.43 Aligned_cols=119 Identities=10% Similarity=0.021 Sum_probs=70.8
Q ss_pred HHHhhcCHHHHHHHHHhchhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCCCc
Q 010994 107 LIGRVHGFLSAESYFSNLKDDEKTY-QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTL-TYNDIMCLYSKTGQYEK 184 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~ 184 (496)
.|....+++.|+..+.+..-..|++ .-|..-+.++.+..+++.+..--.+.++. .||.. ....+.........++.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 3444566777777777777777865 44566677777788888776655555553 44443 33445556667778888
Q ss_pred HHHHHHHHHH----CCCCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994 185 VPDVLTEMKA----KNIFPDNFSYRICINSYGARSDLEGMEIILREM 227 (496)
Q Consensus 185 a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 227 (496)
|+..+.+... ..+.+-......|..+--+.=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888777633 234444444555554443333444444444444
No 382
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.55 E-value=71 Score=27.30 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=9.9
Q ss_pred hhhhHHHhhcCHHHHHHHHHhc
Q 010994 103 VQLDLIGRVHGFLSAESYFSNL 124 (496)
Q Consensus 103 ~~~~~~~~~~~~~~A~~~~~~~ 124 (496)
.++..+...|+.+.|..++...
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhc
Confidence 3444444444444444444443
No 383
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.52 E-value=35 Score=35.00 Aligned_cols=133 Identities=18% Similarity=0.142 Sum_probs=83.7
Q ss_pred hhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 104 QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 104 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
.+.++...|+++.|++.-..+- |..+|..|.....+.|+.+-|...|++.+.- +.|--.|.-.|+.+
T Consensus 649 RF~LaLe~gnle~ale~akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~e 715 (1202)
T KOG0292|consen 649 RFELALECGNLEVALEAAKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLE 715 (1202)
T ss_pred heeeehhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHH
Confidence 3466778888888887765543 4778999999999999999998888876653 33444455667777
Q ss_pred cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
+-.++.+....+ -|.. .......-.|+.++-.++++... .. | -.|. .-...|.-++|.++.++.
T Consensus 716 KL~Km~~iae~r---~D~~---~~~qnalYl~dv~ervkIl~n~g-~~---~--layl----ta~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 716 KLSKMMKIAEIR---NDAT---GQFQNALYLGDVKERVKILENGG-QL---P--LAYL----TAAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred HHHHHHHHHHhh---hhhH---HHHHHHHHhccHHHHHHHHHhcC-cc---c--HHHH----HHhhcCcHHHHHHHHHhh
Confidence 666655544332 1221 11222223577777777776654 21 1 1221 123467788888888887
Q ss_pred HH
Q 010994 264 EE 265 (496)
Q Consensus 264 ~~ 265 (496)
..
T Consensus 780 ~~ 781 (1202)
T KOG0292|consen 780 EK 781 (1202)
T ss_pred cc
Confidence 55
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.39 E-value=31 Score=29.95 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994 380 WAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 380 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
.-.+..-|...|++++|.++|+.+...+..+.=..+...+...+..++.+.|+.+....+.=
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34567778888899999998888876554333344556677777777888888887776543
No 385
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.81 E-value=14 Score=23.83 Aligned_cols=30 Identities=3% Similarity=0.112 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKE 159 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 159 (496)
|-.-.-.+|.+|...|++++|.++.+.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333334566667777777777766666543
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.08 E-value=50 Score=24.90 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..+-++.+...++.|++.....-+.+|-+.+++..|.++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555666777777777777777777777777777766654
No 387
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=66.61 E-value=80 Score=28.13 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994 186 PDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME 228 (496)
Q Consensus 186 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 228 (496)
.++++.|...++.|.-..+.-+.-.+.+.=.+.+++.+++.+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 3455555555666666555555555555556666666666665
No 388
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.32 E-value=1.7e+02 Score=30.43 Aligned_cols=266 Identities=11% Similarity=0.052 Sum_probs=126.2
Q ss_pred hhhHHHhhcCHHHHHHHHHhchhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 010994 104 QLDLIGRVHGFLSAESYFSNLKDDEKT--YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ 181 (496)
Q Consensus 104 ~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 181 (496)
+-..|...|+++.|.+.-+.- |+ ..++..-.+.|...+++..|.+++.++.+ .+..+.--+....+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQ 431 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCC
Confidence 557788889999988875432 33 23445556777788899999998887733 34555555555555
Q ss_pred CCcHHHHHHHHHHCCCCCChhhHHH-----HHHHHh-hcCChH----HHHHHHH--------HhhcCCCCCCCHHHHHHH
Q 010994 182 YEKVPDVLTEMKAKNIFPDNFSYRI-----CINSYG-ARSDLE----GMEIILR--------EMESQPHIVLDWSTYASA 243 (496)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~-~~~~~~----~a~~~~~--------~~~~~~~~~~~~~~~~~l 243 (496)
.+ ++..|-.=+-..++|...+-.. ++..|. +.++++ ++..-++ ++.......-+...+.+.
T Consensus 432 ~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 432 ER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred HH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Confidence 55 4443332222234554433222 222222 222222 1211111 111000000111222234
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCH
Q 010994 244 AHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH 323 (496)
Q Consensus 244 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (496)
-..+...|+.+.+..+-.-|. .|..++..+.+.+.+++|++++..- .+...+-...-.+ .....
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~------~~~el~yk~ap~L-i~~~p 574 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ------RNPELFYKYAPEL-ITHSP 574 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc------cchhhHHHhhhHH-HhcCc
Confidence 445556666666655544432 2566777788888888888887632 1111111111111 11222
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC---chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 010994 324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG---LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCM 400 (496)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 400 (496)
.+....+. ..+-..+......++..+.+.+ ....+...++-....-..-++..+|.++..|+...+ +...-.+
T Consensus 575 ~~tV~~wm---~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~-~~ll~~l 650 (911)
T KOG2034|consen 575 KETVSAWM---AQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER-DDLLLYL 650 (911)
T ss_pred HHHHHHHH---HccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc-cchHHHH
Confidence 22222222 2222222233334444444432 233344444433333233377888888888886554 3333333
Q ss_pred HH
Q 010994 401 KA 402 (496)
Q Consensus 401 ~~ 402 (496)
+.
T Consensus 651 e~ 652 (911)
T KOG2034|consen 651 EI 652 (911)
T ss_pred HH
Confidence 33
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.16 E-value=34 Score=28.35 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 412 GWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 412 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
...|+..++..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3678888888888888888888888888887777666
No 390
>PHA00425 DNA packaging protein, small subunit
Probab=66.10 E-value=28 Score=23.34 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 432 SVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
+.+.|...+..+++....++..||++...+.++.
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHk 47 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHK 47 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHHhc
Confidence 5677888888888877888899999888887766
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.06 E-value=19 Score=29.85 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=16.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994 163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194 (496)
Q Consensus 163 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (496)
.|+..+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555544444
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.80 E-value=8.7 Score=36.03 Aligned_cols=50 Identities=6% Similarity=0.012 Sum_probs=21.9
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHHhcCChHHHHHHHHHHHH
Q 010994 354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVA-AGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..++++.|..++.++++ ..||...|-..= .++.+.+++..|+.=+.++++
T Consensus 16 ~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred ccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444444444444443 444444444433 334444444444444444443
No 393
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.72 E-value=28 Score=34.35 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=23.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCH
Q 010994 382 VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV 433 (496)
Q Consensus 382 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 433 (496)
+++.+|...|++-.+.++++..+. ...|-+.=...++..++.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~---~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID---HNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCcCCeeehhHHHHHHHHHHhcCCc
Confidence 555555555555555555555544 1122222234445555555555543
No 394
>PRK10941 hypothetical protein; Provisional
Probab=65.60 E-value=94 Score=27.42 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=27.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+-.+|.+.++++.|+++.+.+....+. ++.-+.--.-.|.+.|.+..|..-++..++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444455555555555555555554332 333344444445555555555555544443
No 395
>PRK10941 hypothetical protein; Provisional
Probab=65.13 E-value=86 Score=27.65 Aligned_cols=61 Identities=11% Similarity=0.002 Sum_probs=39.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 010994 242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK 303 (496)
Q Consensus 242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 303 (496)
.+-.+|.+.++++.|.++.+.+..-.+ .+..-+.--.-.|.+.|.+..|..-++.....++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 344566777777777777777766443 4445555556667777777777777766666554
No 396
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=64.64 E-value=1.3e+02 Score=28.47 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=32.4
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.|+.-|...|++.+|.+.++++----.. ....+.+++.+..+.|+-...+.+++....
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4555566666666666665544332111 344566666666666666655556555544
No 397
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=64.28 E-value=21 Score=23.56 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 432 SVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
+.+.|..++..+++....++..||++...+.++.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 5677888888888877888899999988888776
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=64.17 E-value=65 Score=25.19 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=39.9
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994 153 HFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS 215 (496)
Q Consensus 153 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 215 (496)
+.+.+++.|++++..- ..++..+.+.++.-.|.++|+.+.+.+...+..|.-..++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4455667777655443 3466677777777888888888888766655555444555555554
No 399
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.99 E-value=1.3e+02 Score=28.09 Aligned_cols=91 Identities=15% Similarity=0.024 Sum_probs=62.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCchhHHHHHHHHHHhc---C---CCCCHhHHHHHHH
Q 010994 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC-NNGLVQNAEAILEDLVEK---G---KATTPNSWAVVAA 385 (496)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~---~---~~p~~~~~~~l~~ 385 (496)
-+..+.+.|-+..|.++.+-+....+.-|+.....+|+.|+ +.++++--+++.+..... . .-|| ..|...+.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aLA 187 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIALA 187 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHHH
Confidence 46667889999999999999998866657777777777776 677888888887776542 1 1233 33444443
Q ss_pred HHHhcCCh---------------HHHHHHHHHHHH
Q 010994 386 GYFDAGKT---------------ERGFQCMKAALS 405 (496)
Q Consensus 386 ~~~~~~~~---------------~~a~~~~~~~~~ 405 (496)
.+ ..++. ++|.+.+.+++.
T Consensus 188 ~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 188 YF-RLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HH-HhcCccccccccccccccchhHHHHHHHHHHH
Confidence 33 34444 788888888876
No 400
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.99 E-value=30 Score=21.45 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=20.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994 382 VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI 423 (496)
Q Consensus 382 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 423 (496)
.+..++.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~-------~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE-------IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH-------HTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-------hCCCcHHHHHH
Confidence 345566677777777777777765 55665444333
No 401
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.71 E-value=52 Score=23.64 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=20.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 010994 141 YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK 195 (496)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (496)
+...|++++|+.+.+.+ ..||...|.+|... +.|-.+++..-+.+|...
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34445555555444333 23444444443332 333333333334444333
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.62 E-value=1.4e+02 Score=28.40 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhcCCC
Q 010994 360 NAEAILEDLVEKGKA 374 (496)
Q Consensus 360 ~a~~~~~~~~~~~~~ 374 (496)
+..+-++.|....+.
T Consensus 298 ~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 298 KCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHhhccC
Confidence 345555666654443
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.90 E-value=78 Score=27.29 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 010994 242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYAS-LGNKSEVLRLWDLEKT 300 (496)
Q Consensus 242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 300 (496)
.++..+-..++++++...++++...+...+..-.+.+..+|-. .|....+++++.....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3667777788888888888888777766677777777776633 3444555655554443
No 404
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.71 E-value=35 Score=26.12 Aligned_cols=71 Identities=8% Similarity=-0.031 Sum_probs=36.7
Q ss_pred CCChhhHHHHHHHHHhcc---ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC
Q 010994 59 KVRVGELQRIIRDLRKRK---RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK 129 (496)
Q Consensus 59 ~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 129 (496)
.++..+-..+..++.+.. +.++.+.+++.+.+.....-..+-.-++.-.+.+.++++.++++.+.+.+.+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 555556666666666654 34566777777776321111112222233444455556665555555554444
No 405
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=62.35 E-value=83 Score=25.51 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=50.8
Q ss_pred CcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhH
Q 010994 28 NKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDL 107 (496)
Q Consensus 28 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (496)
+...|...|.+.+.+...+..++......+.--|...-...+..-.+.| ..-..+...+.+.| ++++.....+..
T Consensus 36 se~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG---i~~~~Ie~aL~~ 110 (174)
T COG2137 36 SEKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG---IDDEIIEEALEL 110 (174)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC---CCHHHHHHHHhc
Confidence 4445666666666666666666666666666666666666666655555 33445556666666 445555555544
Q ss_pred HHhhcCHHHHHHHHH
Q 010994 108 IGRVHGFLSAESYFS 122 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~ 122 (496)
.......+.|..++.
T Consensus 111 ~~~~~~~~~a~~~~~ 125 (174)
T COG2137 111 IDEEDEQERARKVLR 125 (174)
T ss_pred cchHHHHHHHHHHHH
Confidence 444444444444433
No 406
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.19 E-value=1.2e+02 Score=27.31 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 205 RICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
..+.-+..+.|+..+|.+.|+.+.++..+..-......|+.++....-+.+...++-+.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556778888888888887633322111223345666666665555555555443
No 407
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.21 E-value=1.3e+02 Score=27.41 Aligned_cols=47 Identities=17% Similarity=0.027 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 010994 148 DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK 195 (496)
Q Consensus 148 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (496)
+.-+.++++..+.+. .+...+...+..+.+..+.++..+.++++...
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455555555422 24444555555555555555555555555554
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.54 E-value=35 Score=20.55 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=16.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 010994 142 VRQRQTDKALSHFRKMKEMGIALSTLTYNDIM 173 (496)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 173 (496)
.+.|-.+++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554444
No 409
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.93 E-value=20 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=31.4
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH
Q 010994 129 KT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLT 168 (496)
Q Consensus 129 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 168 (496)
|| ..-|+..|....+.||+++|+.++++.++.|+.--..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 44 34567899999999999999999999999987633333
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.72 E-value=1.6e+02 Score=27.56 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhccc---CccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQ---KDGIGYNFLISLYASLGNKSEVLRLWDLEKTA 301 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 301 (496)
.+.-+...|..+|+++.|++.|.+..+- +. -....|-.+|..-.-.|+|.....+..+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3455666777777777777777664331 11 11233445555555666666666665544443
No 411
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.57 E-value=18 Score=27.44 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994 180 GQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209 (496)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 209 (496)
|.-..|..+|..|.+.|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4445556666666666655552 444443
No 412
>PRK14136 recX recombination regulator RecX; Provisional
Probab=58.30 E-value=1.4e+02 Score=26.75 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=16.4
Q ss_pred cHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHH
Q 010994 31 TLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRII 69 (496)
Q Consensus 31 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 69 (496)
.|...|.+.+.+...+..++..+.+.+.--|......++
T Consensus 181 ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyV 219 (309)
T PRK14136 181 ELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLV 219 (309)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 333444433333334444444444444444444434444
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.28 E-value=60 Score=26.45 Aligned_cols=42 Identities=5% Similarity=0.023 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG 180 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 180 (496)
..+-.|.+.|.+++|.+++++.... |+......-+....+..
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 4556677777777777777777653 34444444444444444
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.96 E-value=2.2e+02 Score=29.03 Aligned_cols=79 Identities=9% Similarity=0.007 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010994 358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVE 437 (496)
Q Consensus 358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 437 (496)
.++|...++...... .+.....--+..-...++++.+...+..|-. +..-...-..-+.+++...|+.++|.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~------~~~~~~rw~YW~aRa~~~~g~~~~A~ 366 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM------EAKEKDEWRYWQADLLLEQGRKAEAE 366 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH------hhccCHhhHHHHHHHHHHcCCHHHHH
Confidence 444555554433221 1333334444444466666666666666543 22223333444555555567777777
Q ss_pred HHHHHHH
Q 010994 438 AFVAALR 444 (496)
Q Consensus 438 ~~~~~~~ 444 (496)
.+|+.+.
T Consensus 367 ~~~~~~a 373 (644)
T PRK11619 367 EILRQLM 373 (644)
T ss_pred HHHHHHh
Confidence 7776653
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.56 E-value=74 Score=23.36 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 274 GYNFLISLYASLGNKSEVLRLWDLEKT 300 (496)
Q Consensus 274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 300 (496)
-|..++..|...|..++|++++.....
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 356666666666666666666665544
No 416
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.80 E-value=75 Score=23.21 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred ccChhHHHHHHHHHHhCCCCCCCcchhhhh-hhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010994 75 RKRFSQALEVSDWMNRKGICVFAPCDHAVQ-LDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSH 153 (496)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 153 (496)
....++|-.+.+++...+ ...+....+ +..+.+.|++++| +..-.....||...|.+| +-.+.|--+++..-
T Consensus 19 ~HcH~EA~tIa~wL~~~~---~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG---EMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT---TTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHH--HHHhhccHHHHHHH
Q ss_pred HHHHHHCC
Q 010994 154 FRKMKEMG 161 (496)
Q Consensus 154 ~~~m~~~g 161 (496)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
No 417
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.73 E-value=1.9e+02 Score=27.90 Aligned_cols=242 Identities=10% Similarity=0.041 Sum_probs=124.1
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhhcC------ChHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 010994 186 PDVLTEMKAKNIFPDNFSYRICINSYGARS------DLEGMEIILREMESQPHIVL-DWSTYASAAHFYIKANLIDKASD 258 (496)
Q Consensus 186 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~------~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~ 258 (496)
..+|++..+. -|+...|...|..|...- .+.....+++......+..+ ....|..+.-.+......-+
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~--- 376 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE--- 376 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH---
Confidence 3455555442 345556666666654422 34445556665552333322 33445555555554443222
Q ss_pred HHHHHHHhcccCccchHHHHHHHHHhcC-CHHHHH-HHHHHHHhhcCCCCchhHHHHHHHHHhcCC-HHHH--HHHHHHH
Q 010994 259 VLKKAEERLEQKDGIGYNFLISLYASLG-NKSEVL-RLWDLEKTACKRYINRDYITMLEALMKLGE-HEEA--EKVLKEW 333 (496)
Q Consensus 259 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~ 333 (496)
+-..+...+...+...|-.-++...... +++-.. ..+......-..+....|+... .|+ .+.. ..++...
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 2222222244455555655555444221 222111 1122222211112222222222 222 1111 1222333
Q ss_pred HhcCCCCCcccH-HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh--cCChHHHHHHHHHHHHhhhcC
Q 010994 334 ELSGNSYDTRIP-NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD--AGKTERGFQCMKAALSVYVEG 410 (496)
Q Consensus 334 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~ 410 (496)
... ..|+..++ +.+++-+-+.|-..+|..++..+... ++|+...|..+|+.-.. ..+...+..+|+.|...
T Consensus 452 ~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~---- 525 (568)
T KOG2396|consen 452 LSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE---- 525 (568)
T ss_pred HHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH----
Confidence 333 34455544 66777788888899999999988876 45677777777764322 22377788888888872
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 411 KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 411 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
.| .|+..|.-.+.-=...|..+.+-.++-+..+
T Consensus 526 fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 24 6677777766666677888777776655444
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.20 E-value=70 Score=22.64 Aligned_cols=20 Identities=5% Similarity=-0.109 Sum_probs=10.0
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 010994 426 KLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 426 ~~~~~g~~~~a~~~~~~~~~ 445 (496)
.....|++++|...+++..+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 33444555555555554433
No 419
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.14 E-value=1.3e+02 Score=25.62 Aligned_cols=69 Identities=12% Similarity=-0.045 Sum_probs=37.3
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhh--hhhHHHhhcCHHHHHHHHHhch
Q 010994 57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAV--QLDLIGRVHGFLSAESYFSNLK 125 (496)
Q Consensus 57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~~~ 125 (496)
...+....++.|+--|.-...+.+|-+.|..-..-.....+.+.... .+......|+.+.|+...+++.
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 55666667777777776666677666666543332210112222222 2445556666666666666554
No 420
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.42 E-value=90 Score=23.69 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCCCcHHHHHHH
Q 010994 149 KALSHFRKMKEMGIALS-TLTYNDIMCLYSKTGQYEKVPDVLTE 191 (496)
Q Consensus 149 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (496)
.+.++|..|..+|+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666665554332 33455555556666666666666554
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.38 E-value=1.5e+02 Score=26.11 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 314 (496)
-+......+...|.+.|++.+|...|-. +-.++...+..++..+...|...++- .. ....+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~e~d--------------lf-i~RaV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPSEAD--------------LF-IARAV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS--HH--------------HH-HHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCcchh--------------HH-HHHHH
Confidence 4556666777888888888888776654 32233333333333333333333221 11 11122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 010994 315 EALMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~ 336 (496)
--|...++...|...++...+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 3345567777777766665543
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.25 E-value=1.8e+02 Score=27.34 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh--HHHHHHHHHH--hcCCCCcHHHHHHHHHHC
Q 010994 138 LNCYVRQRQTDKALSHFRKMKEMGIALSTL--TYNDIMCLYS--KTGQYEKVPDVLTEMKAK 195 (496)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~m~~~ 195 (496)
+..+...+++..|.++|+.+.++ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455778899999999888877 555554 4445555554 344667788888776654
No 423
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=55.21 E-value=1.6e+02 Score=26.63 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=11.8
Q ss_pred HHHHHHHHHhchhcCCCHHHHHHHHHHH
Q 010994 114 FLSAESYFSNLKDDEKTYQTYGALLNCY 141 (496)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~li~~~ 141 (496)
+..++.++..+...+++..+|..++..+
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3444444444422344555555544443
No 424
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.80 E-value=1.5e+02 Score=26.05 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=11.9
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010994 386 GYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~ 405 (496)
-|...++...|...+....+
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 34455666666666666555
No 425
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.64 E-value=1.8e+02 Score=26.57 Aligned_cols=120 Identities=14% Similarity=0.052 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh---cCChHHHHHHH
Q 010994 324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD---AGKTERGFQCM 400 (496)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~ 400 (496)
+.-..+++++.+.. +.+......++..+.+..+.+...+-++++...... +...|...+..... .-.++.....|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44556666666653 234555566666666666777777777777776443 56666666665544 23456666666
Q ss_pred HHHHHhhhcC-CCC------CCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 401 KAALSVYVEG-KGW------KPDP-----KVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 401 ~~~~~~~~~~-~~~------~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
.+++...... .+. .++. ..+..+...+..+|..+.|..+++.+.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence 6655522100 111 1111 1223333345678999999999997766
No 426
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.27 E-value=2.9e+02 Score=28.92 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=123.1
Q ss_pred HHhcCCCCcHHHHHHHHHHCCCCCChh-------hHHHHHH-HHhhcCChHHHHHHHHHhhc---CCCCCCCHHHHHHHH
Q 010994 176 YSKTGQYEKVPDVLTEMKAKNIFPDNF-------SYRICIN-SYGARSDLEGMEIILREMES---QPHIVLDWSTYASAA 244 (496)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~li 244 (496)
....+++++|..+..++...-..|+.. .++.+-. .....|+++.|.++-+.... ..-..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678999999998887652222221 2333322 23456888998888766652 222335566677778
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccCccchH---HHHH--HHHHhcCCH--HHHHHHHHHHHhhcC--C----CCchhHH
Q 010994 245 HFYIKANLIDKASDVLKKAEERLEQKDGIGY---NFLI--SLYASLGNK--SEVLRLWDLEKTACK--R----YINRDYI 311 (496)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~l~--~~~~~~~~~--~~a~~~~~~~~~~~~--~----~~~~~~~ 311 (496)
.+..-.|++++|..+..+..+..-.-++..+ ..+. ..+...|+. .+....|........ + +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999998877665433444433 3332 234556632 223333332222111 1 1223445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCcccH--HHHHHHHHhcCchhHHHHHHHHHHhcCCCC----CHhHHH
Q 010994 312 TMLEALMKLGEHEEAEKVLKEWELSG----NSYDTRIP--NAVIIGYCNNGLVQNAEAILEDLVEKGKAT----TPNSWA 381 (496)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~ 381 (496)
.+..++.+ ++.+..-.....+.| ..|-...+ ..++..+...|+.++|...++++......+ +..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 55555555 333333332222222 12211112 256777788999999999998887543332 222222
Q ss_pred HHH--HHHHhcCChHHHHHHHHH
Q 010994 382 VVA--AGYFDAGKTERGFQCMKA 402 (496)
Q Consensus 382 ~l~--~~~~~~~~~~~a~~~~~~ 402 (496)
..+ ......|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 222 234467888877776666
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.26 E-value=29 Score=22.33 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=5.6
Q ss_pred HHHHhcCchhHHHHHH
Q 010994 350 IGYCNNGLVQNAEAIL 365 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~ 365 (496)
.+|...|++++|.+++
T Consensus 31 ~gllqlg~~~~a~eYi 46 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYI 46 (62)
T ss_dssp HHHHHTT-HHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3333333333333333
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=52.99 E-value=1e+02 Score=27.50 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=47.4
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA 213 (496)
Q Consensus 151 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 213 (496)
.++|+.|.+.++.|.-.++.-+.-.+.+.=.+..++.+++.+... ..-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 467888899999999999988888888888999999999999763 3337777777664
No 429
>PRK09857 putative transposase; Provisional
Probab=52.74 E-value=1.2e+02 Score=27.26 Aligned_cols=65 Identities=11% Similarity=0.218 Sum_probs=46.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCCh
Q 010994 420 ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDE 484 (496)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~ 484 (496)
+..+++.....|+.++..++++.+.+..+......-++..-+.+.| ++++++.++|...|+.++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 4556665566777777777887776655544445556777777777 6688899999999988664
No 430
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.39 E-value=72 Score=24.94 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc
Q 010994 49 ELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH 112 (496)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (496)
+.....+.|.+++..- ..++..+.+.+..-.|.++++.+.+.+ .+.++.+.-..++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~-p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEG-PGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCHhHHHHHHHHHHHCC
Confidence 4455556666665554 466777777777788888888888876 4455555555555555544
No 431
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.26 E-value=18 Score=27.46 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=15.3
Q ss_pred cCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994 355 NGLVQNAEAILEDLVEKGKATTPNSWAVVAA 385 (496)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 385 (496)
.|.-..|..+|..|++.|-+|| .|+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3445555666666666665554 3444443
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.13 E-value=62 Score=28.11 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHH----CC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994 171 DIMCLYSKTGQYEKVPDVLTEMKA----KN-IFPDNFSYRICINSYGARSDLEGMEIILREM 227 (496)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 227 (496)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455667777777777777776632 23 3344555666777777777777766655444
No 433
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.69 E-value=1.6e+02 Score=25.33 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHh
Q 010994 205 RICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK-ANLIDKASDVLKKAEER 266 (496)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~ 266 (496)
..++..+-..|+++++..+++++. ..+...+..--+.+-.+|-. .|..-.+++++..+.+.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~-~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLI-EMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHH-HTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 346677788899999999999998 66766777777777777743 34555566666665443
No 434
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.43 E-value=2e+02 Score=26.11 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----hcccCccchHHHHHH-HHHhcCCHHHHHHHHHHHHhhcCCCCc----
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEE----RLEQKDGIGYNFLIS-LYASLGNKSEVLRLWDLEKTACKRYIN---- 307 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 307 (496)
....-.....|++-||-+.|.+.+.+-.+ .|.+.|+..+..-+. .|....-+.+-++..+.+.+.|+..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34445566777888888888777765533 244555554443332 233333344444444455555553332
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (496)
.+|..+ .|....++.+|-.+|-+....
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 233322 233456777777777666543
No 435
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.15 E-value=55 Score=31.02 Aligned_cols=103 Identities=8% Similarity=-0.028 Sum_probs=54.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccH-HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIP-NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 394 (496)
-+.+.++++.|..++.++.+. .||-..| ..-..++.+.+++..|+.=+..+++..+. ....|..=..++...+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 344556677777777777665 4443333 22335666777777777766666665422 1122222233333344444
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHh
Q 010994 395 RGFQCMKAALSVYVEGKGWKPDPKVITSILSKLG 428 (496)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 428 (496)
+|...|+... .+.|+..-+...+.-|-
T Consensus 90 ~A~~~l~~~~-------~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 90 KALLDLEKVK-------KLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHhh-------hcCcCcHHHHHHHHHHH
Confidence 4444444443 36676666665555443
No 436
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.84 E-value=96 Score=22.39 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCCcchhh-hhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010994 77 RFSQALEVSDWMNRKGICVFAPCDHA-VQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFR 155 (496)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 155 (496)
..++|..+-+++...+. ...... ..+..+...|++++|..+.+... .||...|.+|-. .+.|-.+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~---~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE---SEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45677777777776651 122222 23566678899999999988775 588888877654 46777777777777
Q ss_pred HHHHCCC
Q 010994 156 KMKEMGI 162 (496)
Q Consensus 156 ~m~~~g~ 162 (496)
+|...|-
T Consensus 93 rla~sg~ 99 (115)
T TIGR02508 93 RLAASGD 99 (115)
T ss_pred HHHhCCC
Confidence 7777753
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.31 E-value=89 Score=21.83 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=4.6
Q ss_pred CChHHHHHHHHH
Q 010994 251 NLIDKASDVLKK 262 (496)
Q Consensus 251 ~~~~~a~~~~~~ 262 (496)
|+.+.|..++..
T Consensus 50 g~~~~ar~LL~~ 61 (88)
T cd08819 50 GNESGARELLKR 61 (88)
T ss_pred CcHHHHHHHHHH
Confidence 333333333333
No 438
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=49.09 E-value=2.3e+02 Score=26.60 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=82.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQ-PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL 281 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 281 (496)
+..-|++.+.-.||.....++++.+... .|..|...+-..+.-+|.--|++.+|.+.|-.+.-. ++.....+...--.
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly-Iqrtks~~~~~~y~ 315 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQ 315 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhh
Confidence 3455678888889988877888777611 232333222234666777788899999988776432 22222222111111
Q ss_pred HHh-cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH-------HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994 282 YAS-LGNKSEVLRLWDLEKTACKRYINRDYITMLEAL-------MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC 353 (496)
Q Consensus 282 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (496)
+.. +...+....++.......+..-..++...+.-+ ..+|+.+.-..+|.-....-..|.+..|..++.-|.
T Consensus 316 ~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~ 395 (525)
T KOG3677|consen 316 YDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYH 395 (525)
T ss_pred HhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCccccccccccc
Confidence 211 123333333333333333211123333332222 224666655555555555445566666666666665
Q ss_pred hcCchhHHHHHHHHHHh
Q 010994 354 NNGLVQNAEAILEDLVE 370 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~ 370 (496)
+.--.......++....
T Consensus 396 kePl~~qlq~fld~v~q 412 (525)
T KOG3677|consen 396 KEPLLQQLQVFLDEVSQ 412 (525)
T ss_pred ccHHHHHHHHHhHHHhh
Confidence 54333332333334433
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.06 E-value=27 Score=30.90 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=27.2
Q ss_pred CCChhH-HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhH
Q 010994 163 ALSTLT-YNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSY 204 (496)
Q Consensus 163 ~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 204 (496)
.||..+ |+.-|....+.||+++|+.++++.++.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344444 457777777777777777777777777765433333
No 440
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.84 E-value=1.5e+02 Score=24.29 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHCCCCCC--hhH-----HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 147 TDKALSHFRKMKEMGIALS--TLT-----YNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 147 ~~~A~~~~~~m~~~g~~p~--~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
.+.|+.+|+.+.+.--.|. ... --..+-.|.++|.+++|.+++++.... |+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 4566666666654422221 111 123456799999999999999999874 455555554444444443
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.57 E-value=2.7e+02 Score=28.52 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcccCcc---chHHHHHHHHHhcCCHHHHHHHHHHHHhhcC------CCCc-hhHHHHHHHHHhcCCHH
Q 010994 255 KASDVLKKAEERLEQKDG---IGYNFLISLYASLGNKSEVLRLWDLEKTACK------RYIN-RDYITMLEALMKLGEHE 324 (496)
Q Consensus 255 ~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~-~~~~~l~~~~~~~~~~~ 324 (496)
+-...+++|.++--.|++ .+...++-.|....+++..+++.+.+..... .++. ..|.-.++--.+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 334455556554333433 3344455555566666666666665444321 0111 12322233333446666
Q ss_pred HHHHHHHHHHhcC--CCCCccc-----HHHH--HHHHHhcCchhHHHHHHHHHHh
Q 010994 325 EAEKVLKEWELSG--NSYDTRI-----PNAV--IIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 325 ~a~~~~~~~~~~~--~~~~~~~-----~~~l--~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
+|+...-.+.+.. +.||... |.-+ -..|...+..+.|.++|++.-+
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 6666555555432 2344322 1111 1123334556667777776655
No 442
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.80 E-value=98 Score=21.88 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=30.1
Q ss_pred HhcCchhHHHHHHHHHH----hcCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 353 CNNGLVQNAEAILEDLV----EKGKAT----TPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 353 ~~~g~~~~a~~~~~~~~----~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+.|++..|.+.+.+.. ..+... -....-.+.......|++++|...+++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35566666654444333 222221 012233345566777888888888888877
No 443
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=47.29 E-value=1.5e+02 Score=23.92 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=37.1
Q ss_pred HHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCh
Q 010994 157 MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL 217 (496)
Q Consensus 157 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 217 (496)
+...|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-..+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4566666544433 44555555566777888888888777666666655555566655544
No 444
>PRK11619 lytic murein transglycosylase; Provisional
Probab=47.08 E-value=3.3e+02 Score=27.83 Aligned_cols=76 Identities=8% Similarity=0.121 Sum_probs=44.0
Q ss_pred hhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 104 QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 104 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
.+..+.+.+++.....++..- ..+...-.....+....|+.++|......+=..|.. .....+.++..+.+.|...
T Consensus 105 ~l~~La~~~~w~~~~~~~~~~---p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPEK---PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHHccCHHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 345556666777666633221 124555556667777778877776666665444432 4556666666666665443
No 445
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.85 E-value=16 Score=32.79 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=46.9
Q ss_pred hhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCCCcHHH
Q 010994 110 RVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS-TLTYNDIMCLYSKTGQYEKVPD 187 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~ 187 (496)
..|.+++|+..|.......| ....|..-..++.+.++...|++=++..... .|| ...|-.--.+..-.|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 34556666666666555544 3444555555566666666666655555443 222 2223333334444566666666
Q ss_pred HHHHHHHCCCCCC
Q 010994 188 VLTEMKAKNIFPD 200 (496)
Q Consensus 188 ~~~~m~~~~~~p~ 200 (496)
.+....+.++.+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 6666666555443
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.80 E-value=1.4e+02 Score=29.89 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCCcccHHHH
Q 010994 277 FLISLYASLGNKSEVLRLWDLEKTACK--RYINRDYITMLEALMKLGEHE------EAEKVLKEWELSGNSYDTRIPNAV 348 (496)
Q Consensus 277 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 348 (496)
+++.+|..+|++-.+.++++....... +.-...|+..++...+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 778888888888888888886654432 233356777777777777653 2333333332 34566777777
Q ss_pred HHHHHhcCchhHHHHHHHHHHh
Q 010994 349 IIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
+.+-...-+-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6655443333333334444443
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.00 E-value=1.2e+02 Score=22.31 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEE 265 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~ 265 (496)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67788888888888888888887765
No 448
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.89 E-value=49 Score=33.09 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=20.7
Q ss_pred chhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010994 99 CDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRK 156 (496)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 156 (496)
+....++..|.+.|-.+.|..+.+.+-..--...-|..-+..+.++|+......+-+.
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344455666666666666655554433221223344444445555554444443333
No 449
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.74 E-value=1.5e+02 Score=23.29 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=34.9
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhc-CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCh
Q 010994 156 KMKEMGIALSTLTYNDIMCLYSKT-GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL 217 (496)
Q Consensus 156 ~m~~~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 217 (496)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556666444333 344444443 45677788888887776655666555555555555543
No 450
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=45.54 E-value=3.7e+02 Score=27.93 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=106.6
Q ss_pred CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhh---HHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994 60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLD---LIGRVHGFLSAESYFSNLKDDEKTYQTYGA 136 (496)
Q Consensus 60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 136 (496)
-+...+..||..+.+.|++++...--..|.... |++|..+...+. .....+....+...|++.....-++..|.-
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~--pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e 188 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA--PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEE 188 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHH
Confidence 345567889999999999988887777777653 455655544432 223457788888888888776555666665
Q ss_pred HHHHHHh-------cCCHHHHHHHHHHHHH-CCCCCC--hhHHHHHH---HHHHhcCCCCcHHHHHHHHHHCCCCCChhh
Q 010994 137 LLNCYVR-------QRQTDKALSHFRKMKE-MGIALS--TLTYNDIM---CLYSKTGQYEKVPDVLTEMKAKNIFPDNFS 203 (496)
Q Consensus 137 li~~~~~-------~g~~~~A~~~~~~m~~-~g~~p~--~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 203 (496)
.+..+.. .++++....+|++..+ .|...+ ...|.... ..|..+-.-++...+|..-...++ |..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~--D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL--DEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc--hhhh
Confidence 5555443 3567778888877653 333222 22232222 233333333555566655554432 2221
Q ss_pred HHHHHHHHh-------hcCChHHHH-------HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 204 YRICINSYG-------ARSDLEGME-------IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAE 264 (496)
Q Consensus 204 ~~~li~~~~-------~~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 264 (496)
-+.-+.--. ...+.+.+. ..|++.. +... +-...|-.+|....+.|+.-.....++++.
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~-q~~~-~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLV-QKEP-IKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHh-hhhH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 111111111 011222222 2233332 2222 333445667777777777766666666553
No 451
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.49 E-value=63 Score=23.68 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=26.2
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhh
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHA 102 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (496)
++|+.+.+....++|+++.++|.+.|- +++....
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE--It~e~A~ 99 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE--ITPEEAK 99 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 567778888999999999999999984 4444333
No 452
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=43.85 E-value=1.6e+02 Score=23.28 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=28.5
Q ss_pred CCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 010994 27 INKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKG 92 (496)
Q Consensus 27 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 92 (496)
.+...|...|.+-|.+...+..+++.+...|.--|.......+..... ....-..+-..+.+.|
T Consensus 26 ~s~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~--~~~g~~~I~~~L~~kG 89 (157)
T PRK00117 26 HSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRAR--KGYGPRRIRQELRQKG 89 (157)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCchHHHHHHHHHHcC
Confidence 334444455555455445555555555554544444333334444311 1122334444455555
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.22 E-value=2.9e+02 Score=25.99 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=33.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKR--YINRDYITMLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
..+.-+...|...|+++.|++.|.+...-+.. .....|..+|..-.-.|++.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44556666677777777777777654443331 1112233444444445555555555555443
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.93 E-value=2.1e+02 Score=27.02 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=11.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHH
Q 010994 273 IGYNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
.++-.+.-+|...+++.+|.+.|.
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~ 188 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFS 188 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554
No 455
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=42.73 E-value=4.2e+02 Score=27.74 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS 165 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 165 (496)
|......+++.+. .+++.+++.+++++...|+...
T Consensus 245 d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 245 DQTYMVRLLDALA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 4444555666544 4888888888888888877543
No 456
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.90 E-value=4.1e+02 Score=27.34 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=79.7
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994 352 YCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 429 (496)
+.--|+-++|..+.++|.... .|- ..-.-++..+|+-.|+-.-..+++.-++. ...-|..-...+.-++.-
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs------D~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS------DVNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc------ccchHHHHHHHHHheeeE
Confidence 445577778888888887542 111 11233456678888887777777776664 444555555555556777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHhCC-CcHHHHHHHHHh
Q 010994 430 EGSVQDVEAFVAALRTVIPMNRQMY--HAFIKANIRNG-KGVDELLDSMKA 477 (496)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g-~~a~~~~~~m~~ 477 (496)
..+.+....+.+.+.+...|.++.= -.|+.+|.-.| .+|+.+++-|..
T Consensus 584 ~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred ecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 7889999999888888766666543 34555666666 899999998875
No 457
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.85 E-value=85 Score=19.45 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=23.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994 422 SILSKLGDEGSVQDVEAFVAALRTVIPMNRQM 453 (496)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 453 (496)
.+.-++.+.|++++|.+..+.+.+..|.+...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34557889999999999999888866666543
No 458
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.66 E-value=4.8e+02 Score=28.12 Aligned_cols=248 Identities=13% Similarity=0.015 Sum_probs=143.6
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010994 164 LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASA 243 (496)
Q Consensus 164 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 243 (496)
+|..+-...+..+.+.+.. ++...+..+.+. ++...-...+.++.+.+........+..+. +. +|..+-...
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L-~~---~d~~VR~~A 704 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHL-GS---PDPVVRAAA 704 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHh-cC---CCHHHHHHH
Confidence 5777777777777777654 455555555542 344444455555555433211223333333 22 455555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCH
Q 010994 244 AHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH 323 (496)
Q Consensus 244 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (496)
+..+...+..+ .. .+-.... .+|...-...+.++.+.+..+.... . -..++...-.....++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~l~~----~---l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVESVAG----A---ATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHHHHH----H---hcCCCHHHHHHHHHHHHHhccc
Confidence 66665543221 12 2222222 3566666667777777665433221 1 2235566666677777777654
Q ss_pred HH-HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 324 EE-AEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKA 402 (496)
Q Consensus 324 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 402 (496)
+. +...+..+.+ .+|...-...+.++.+.|..+.+...+..+.+. ++...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43 3444545543 346667778888888888876654555555543 355566667777777765 456677777
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 403 ALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 403 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
++. .|+...-...+.++.+.+....+...+....+.
T Consensus 846 ~L~--------D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 846 ALT--------DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred Hhc--------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 764 577788888888888875555667666666553
No 459
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.36 E-value=83 Score=20.54 Aligned_cols=50 Identities=6% Similarity=0.112 Sum_probs=31.0
Q ss_pred CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
.|....++.++..+++..-.+.++..+.++.+.|.. +..+|.--+..+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 345556677777777777777777777777776654 55555555555554
No 460
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.21 E-value=3.6e+02 Score=26.60 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010994 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS 165 (496)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 165 (496)
.....+++++.. |+.+.++.++++|...|..|.
T Consensus 247 ~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 247 LLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 333445555443 777777777777777776654
No 461
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.02 E-value=1.6e+02 Score=26.44 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK 392 (496)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 392 (496)
++....+.++.......+..+. ....-...+..+...|++..|+.++.+..+ -...+..+-..-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010994 393 TERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEA 438 (496)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 438 (496)
+++-.....++++....+--...|+..|..+..+|.-.|+...+.+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
No 462
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.84 E-value=3.4e+02 Score=26.14 Aligned_cols=122 Identities=15% Similarity=0.065 Sum_probs=71.1
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHH
Q 010994 141 YVRQRQTDKALS-HFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEG 219 (496)
Q Consensus 141 ~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 219 (496)
-...|+.-.|-+ ++..+....-.|+.... ....+...|+++.+...+...... +.....+..++++...+.|+++.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 334566665544 34444443223343333 334455678888888777665443 33455677788888888888888
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 010994 220 MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL 267 (496)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 267 (496)
|...-..|. ...+ .+..........--..|-+|++...++++....
T Consensus 376 a~s~a~~~l-~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMML-SNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHh-cccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888887776 4433 333333322333334566777777777765443
No 463
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=40.82 E-value=4.8e+02 Score=27.82 Aligned_cols=81 Identities=9% Similarity=-0.080 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCC-CcHH
Q 010994 393 TERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT--VIPMNRQMYHAFIKANIRNG-KGVD 469 (496)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g-~~a~ 469 (496)
.++-.+.|.+.+. .--..|..++..-..-+...|++..|.+++.++.+ +..++...|-.++..+...| ..-.
T Consensus 1212 ld~~~e~y~el~k-----w~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1212 LDSYNENYQELLK-----WLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred hhhHHHHHHHHHH-----HhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 4445556666555 22233444555445555667788888887776655 35566667777777777777 6566
Q ss_pred HHHHHHHhC
Q 010994 470 ELLDSMKAD 478 (496)
Q Consensus 470 ~~~~~m~~~ 478 (496)
.+++.+..-
T Consensus 1287 t~~~~~~~v 1295 (1304)
T KOG1114|consen 1287 TFVKNWMRV 1295 (1304)
T ss_pred HHHhhheec
Confidence 666666543
No 464
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.26 E-value=3.6e+02 Score=26.29 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIAL 164 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 164 (496)
.+..++......+....|+.++++|.+.|..|
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 33344444433333445555555555555443
No 465
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.91 E-value=2.4e+02 Score=24.07 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=61.8
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC---CCHHHHH--HHHHHHHhcCChHHHHHHH
Q 010994 186 PDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIV---LDWSTYA--SAAHFYIKANLIDKASDVL 260 (496)
Q Consensus 186 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~--~li~~~~~~~~~~~a~~~~ 260 (496)
.+..+++.. +.+...-++.|+--|.-...+.+|-+.|..-. ++. .+...++ .-|......|+++.|++..
T Consensus 13 ~~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i 87 (228)
T KOG2659|consen 13 EEWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV 87 (228)
T ss_pred hhhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence 333444433 34455556666655555444444444443322 222 3333332 4567778899999999998
Q ss_pred HHHHHhcccCccchHHHHHH----HHHhcCCHHHHHHHHHHHHh
Q 010994 261 KKAEERLEQKDGIGYNFLIS----LYASLGNKSEVLRLWDLEKT 300 (496)
Q Consensus 261 ~~m~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~ 300 (496)
.++.......|...+-.+.. -..+.|..++|+++.+.-..
T Consensus 88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 88765555455444433332 24567778888887774433
No 466
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.57 E-value=1.2e+02 Score=22.37 Aligned_cols=42 Identities=2% Similarity=-0.065 Sum_probs=19.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994 174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS 215 (496)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 215 (496)
..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333334444555555555555544444444444444444444
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.35 E-value=83 Score=23.24 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCc
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEK 184 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 184 (496)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4566666667778899999999888877788887777888888875543
No 468
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.10 E-value=99 Score=20.91 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 010994 378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKV 419 (496)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 419 (496)
..|..-..-|-+.|++++|+.+|+++++..+.-....||..+
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 344455556777888888888888887744333344455543
No 469
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.01 E-value=1.1e+02 Score=19.75 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=8.5
Q ss_pred HhcCChHHHHHHHHHHH
Q 010994 248 IKANLIDKASDVLKKAE 264 (496)
Q Consensus 248 ~~~~~~~~a~~~~~~m~ 264 (496)
...|++-+|.++++.+-
T Consensus 10 ~n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELW 26 (62)
T ss_dssp HHTT-HHHHHHHHHHHC
T ss_pred HcCCCHHHhHHHHHHHH
Confidence 34555555555555553
No 470
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.48 E-value=4.8e+02 Score=26.88 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=63.5
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 010994 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS 289 (496)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (496)
++...|+.++|..+.++|..+.++..-..-..++..+|+..|+-....+++.-.... +..|+.-+..+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 344556666777777777633332222222334556677777776666666654332 2234444444444555566777
Q ss_pred HHHHHHHHHHhhcCCCCchhHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 010994 290 EVLRLWDLEKTACKRYINRDYIT--MLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 290 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
....+...+.+... |.++-=.+ +.-+|+-.| ..+|..+++-|..
T Consensus 589 ~~~s~V~lLses~N-~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSESYN-PHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhhcC-hhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 77777663333322 44432222 233333333 4567777776654
No 471
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.59 E-value=1.2e+02 Score=19.77 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 010994 129 KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK 178 (496)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 178 (496)
|+...++.++...++..-.+.++..+.+..+.|.- +..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 34456677777777777777777777777777653 66666665555554
No 472
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.52 E-value=19 Score=32.32 Aligned_cols=89 Identities=20% Similarity=0.066 Sum_probs=44.7
Q ss_pred hcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 010994 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEK 328 (496)
Q Consensus 249 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (496)
..|.++.|++.|...+...+ +....|..-.+++.+.+++..|++=+........ .....|-.-..+-...|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~-Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP-DSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCc-ccccccchhhHHHHHhhchHHHHH
Confidence 34555555555555544332 4444444445555555566666555554443322 222334333444445566666666
Q ss_pred HHHHHHhcCCC
Q 010994 329 VLKEWELSGNS 339 (496)
Q Consensus 329 ~~~~~~~~~~~ 339 (496)
.+....+.+..
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 66666655443
No 473
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.00 E-value=3.4e+02 Score=24.80 Aligned_cols=19 Identities=5% Similarity=0.214 Sum_probs=8.9
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 010994 426 KLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 426 ~~~~~g~~~~a~~~~~~~~ 444 (496)
.+...||..++.+.++..+
T Consensus 124 ~~L~i~DLk~~kk~ldd~~ 142 (380)
T KOG2908|consen 124 LKLEINDLKEIKKLLDDLK 142 (380)
T ss_pred HHHhcccHHHHHHHHHHHH
Confidence 3334455555555444443
No 474
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.94 E-value=1.1e+02 Score=20.88 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.2
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCC
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGI 93 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~ 93 (496)
++++.+.+..-.++|+++++.+.++|.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 566778888889999999999999984
No 475
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.77 E-value=1.5e+02 Score=20.64 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=18.9
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 010994 152 SHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192 (496)
Q Consensus 152 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 192 (496)
++|+-....|+..|...|..++....-+=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444445555555555554444443333334444444443
No 476
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.94 E-value=1.1e+02 Score=22.84 Aligned_cols=45 Identities=7% Similarity=0.041 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994 171 DIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS 215 (496)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 215 (496)
.++......+.+-.|.++++.+.+.+...+..|.-..++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445556666666665555555444444444444444
No 477
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.73 E-value=3.4e+02 Score=24.40 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHH--HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccch
Q 010994 197 IFPDNFSYRICIN--SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG 274 (496)
Q Consensus 197 ~~p~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 274 (496)
+.|....++-+|+ .|...+=-++..+++.-+. ++.++...-.+++.+..-.. |..|..+.
T Consensus 107 i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk---~F~e~Er~KLA~~Tal~l~n---------------Gt~~~tvl 168 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLK---LFEENERKKLAMLTALLLSN---------------GTLPATVL 168 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHhC---------------CCCCHHHH
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994 275 YNFLISLYASLG-NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC 353 (496)
Q Consensus 275 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (496)
-..+=..+.+.| -..-|.++|+....... .+.++..+.+.+.-+.-.++| +|+..+-..+...+.
T Consensus 169 ~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~------i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft 234 (412)
T KOG2297|consen 169 QSLLNDNLVKEGIALSFAVKLFKEWLVEKD------INDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFT 234 (412)
T ss_pred HHHHHhhHHHHhHHHHHHHHHHHHHHhhcc------HHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHh
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCH
Q 010994 354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV 433 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 433 (496)
..|--+-..-.=.++..-. --..-..|..-..+...+++.....++-.+ ..--|++.+...+-.+....+.|
T Consensus 235 ~agL~elvey~~~q~~~~a---~kElq~~L~~q~s~e~p~~evi~~VKee~k-----~~nlPe~eVi~ivWs~iMsaveW 306 (412)
T KOG2297|consen 235 DAGLKELVEYHRNQQSEGA---RKELQKELQEQVSEEDPVKEVILYVKEEMK-----RNNLPETEVIGIVWSGIMSAVEW 306 (412)
T ss_pred HhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccCCCHHHHHHHHHHHHH-----hcCCCCceEEeeeHhhhhHHHhh
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 010994 434 QDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKA 477 (496)
Q Consensus 434 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~ 477 (496)
..-.++...-.- .....|.-|+.+++..|+.-+.++.+.++
T Consensus 307 nKkeelva~qal---rhlK~yaPLL~af~s~g~sEL~Ll~KvQe 347 (412)
T KOG2297|consen 307 NKKEELVAEQAL---RHLKQYAPLLAAFCSQGQSELELLLKVQE 347 (412)
T ss_pred chHHHHHHHHHH---HHHHhhhHHHHHHhcCChHHHHHHHHHHH
No 478
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.63 E-value=4.6e+02 Score=25.86 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 204 YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTY---ASAAHFYIKANLIDKASDVLKKAEE 265 (496)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~ 265 (496)
...++.-|.+.+++++|..++..|. .+. -....| +.+.+.+.+..--++.+..++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn--W~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN--WNT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--ccc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3456777888888888888888885 222 122223 3344555555444455555555444
No 479
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.48 E-value=3.4e+02 Score=24.23 Aligned_cols=103 Identities=14% Similarity=0.020 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----cccCccchH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 010994 232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER----LEQKDGIGY-NFLISLYASLGNKSEVLRLWDLEKTACKRYI 306 (496)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 306 (496)
|-.....++..+...|++.++.+.+.+...+.... |.+.|+... ..+.-.|....-+++.++..+.+.+.|...+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 33344556666777777777777777776654332 333333221 1222334444445666666666766666333
Q ss_pred c----hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994 307 N----RDYITMLEALMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 307 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (496)
. .+|.-+- +....++.+|-.++......
T Consensus 190 RrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 190 RRNRYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 2 2232221 22344566776666665543
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.42 E-value=3.6e+02 Score=24.55 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCcccHHHHHHH-HHhcCchhHHHHHHHHHHhcCCCCCH----h
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWEL----SGNSYDTRIPNAVIIG-YCNNGLVQNAEAILEDLVEKGKATTP----N 378 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~----~ 378 (496)
..+.....-|++.||.+.|.+.+....+ .|.+.|+..+.+-+.. |....-+.+-++..+.+.+.|...+- .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455667778999999888887776554 3556666555433322 33333344555555556666654332 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALSVY 407 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 407 (496)
+|..+ .|....++.+|..+|-+.+..|
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcccc
Confidence 45443 2445678889999998887633
No 481
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.76 E-value=2.8e+02 Score=23.03 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=14.8
Q ss_pred hccCCHHHHHHHHHHHHh
Q 010994 428 GDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~ 445 (496)
.+.|+++.|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356999999999988766
No 482
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.65 E-value=1.5e+02 Score=21.71 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=8.0
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 010994 244 AHFYIKANLIDKASDVLKK 262 (496)
Q Consensus 244 i~~~~~~~~~~~a~~~~~~ 262 (496)
+.-|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444444
No 483
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.53 E-value=81 Score=23.54 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
-..++..+...+..-.|.++++.+.+.|...+..|...-+..+.+.|-..
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 34677778888888899999999999888888887777777777777543
No 484
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=33.46 E-value=3e+02 Score=23.33 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCChH-------HHHHHHHHHHHhhhcCCCCC-CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 379 SWAVVAAGYFDAGKTE-------RGFQCMKAALSVYVEGKGWK-PDPK-VITSILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~~~~~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
.+-.+...|-..|+.+ .|.+.|.++.+ -+..+.. -+.. ....+.....+.|+.++|.+.|..+...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~--~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE--NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH--hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444555566666644 45555555554 1111111 2223 3334555678889999999999988764
No 485
>PRK12798 chemotaxis protein; Reviewed
Probab=33.29 E-value=4.3e+02 Score=25.07 Aligned_cols=191 Identities=8% Similarity=-0.038 Sum_probs=97.3
Q ss_pred hhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-CCCC
Q 010994 105 LDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT-GQYE 183 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~~ 183 (496)
+-....-|+......++..-.....|......++ .| -.|+.++|.+.+..+.....++....|-.|+.+-.-. .+..
T Consensus 88 ~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~l-aY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~ 165 (421)
T PRK12798 88 LIYLLSGGNPATLRKLLARDKLGNFDQRLADGAL-AY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPA 165 (421)
T ss_pred HhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHH-HH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHH
Confidence 3333344555555554444332222322222222 22 2688888888888887777777888888887765544 4788
Q ss_pred cHHHHHHHHHHCCCCCChh----hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHH-HHHHHHHHhcCC---hHH
Q 010994 184 KVPDVLTEMKAKNIFPDNF----SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTY-ASAAHFYIKANL---IDK 255 (496)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~---~~~ 255 (496)
+|+++|+...-. -|-+. ...--+-.....|+.+++..+-..-.......|-..-| ..+...+.+.++ .+.
T Consensus 166 ~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~ 243 (421)
T PRK12798 166 TALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR 243 (421)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH
Confidence 888888887653 33322 23334445667777776554433322111111222222 222223333322 222
Q ss_pred HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 010994 256 ASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC 302 (496)
Q Consensus 256 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 302 (496)
...++..| ....-...|..+.+.-.-.|+.+-|.-.-++.....
T Consensus 244 l~~~ls~~---d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 244 LVEILSFM---DPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHhc---CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 22222222 111123466666666677777776666555554443
No 486
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.23 E-value=3.8e+02 Score=24.40 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHCCCCCChh---hHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994 172 IMCLYSKTGQYEKVPDVLTEMKAKNIFPDNF---SYRICINSYGARSDLEGMEIILREME 228 (496)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~ 228 (496)
|.-+..+.|+..+|.+.|+++.+. .|-.. .-..++.++....-+.++..++-+-.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445667777777777766554 12111 12345556655555555555544443
No 487
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.83 E-value=2.2e+02 Score=21.60 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=9.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHH
Q 010994 419 VITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
.|......+...|++++|.++++
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 33344444444444444444443
No 488
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=32.79 E-value=6.4e+02 Score=26.96 Aligned_cols=81 Identities=16% Similarity=0.025 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-hcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994 216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEE-RLEQKDGIGYNFLISLYASLGNKSEVLRL 294 (496)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 294 (496)
..+.-.+.|.++..-.+. .|..++..-...+...|++..|.+++.++.+ .+-.++...|..++..+...|-- ....+
T Consensus 1211 ~ld~~~e~y~el~kw~d~-~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~ 1288 (1304)
T KOG1114|consen 1211 KLDSYNENYQELLKWLDA-SDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATF 1288 (1304)
T ss_pred hhhhHHHHHHHHHHHhhc-CCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHH
Confidence 344455555555522222 4555566566677778888888888888765 34456666777777777666643 33344
Q ss_pred HHHH
Q 010994 295 WDLE 298 (496)
Q Consensus 295 ~~~~ 298 (496)
++.+
T Consensus 1289 ~~~~ 1292 (1304)
T KOG1114|consen 1289 VKNW 1292 (1304)
T ss_pred Hhhh
Confidence 4433
No 489
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.67 E-value=4.1e+02 Score=24.64 Aligned_cols=249 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010994 77 RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRK 156 (496)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 156 (496)
+++.++.++......+ ..|+...|-..| ....+.+-.++.+.+....-.++..+
T Consensus 74 ~~~~li~~~~~FV~~~-----------------n~eqlr~as~~f---------~~lc~~l~~~~~~~~~p~~gi~ii~~ 127 (422)
T KOG2582|consen 74 DPETLIELLNDFVDEN-----------------NGEQLRLASEIF---------FPLCHDLTEAVVKKNKPLRGIRIIMQ 127 (422)
T ss_pred CHHHHHHHHHHHHHhc-----------------ChHHHhhHHHHH---------HHHHHHHHHHHHhcCCccccchHHHH
Q ss_pred HHHCCCCCCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC--------ChHHHHHHH
Q 010994 157 MKEMGIALST----LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS--------DLEGMEIIL 224 (496)
Q Consensus 157 m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------~~~~a~~~~ 224 (496)
.... ..|.. .....++..+.+.+++..+...++.-.-.-.+.|...-...+-.|+-.| +++.|+-++
T Consensus 128 av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~ 206 (422)
T KOG2582|consen 128 AVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLL 206 (422)
T ss_pred HHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHH
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 010994 225 REMESQPHIVLDWSTYASAAHFYIK--------ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
.... .. |....-...+.+|-+ .|+.-..-+--......-.+|-...|.-+.++|.+...-+ ++
T Consensus 207 e~~v---~~-Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~e-----Lr 277 (422)
T KOG2582|consen 207 EICV---TT-PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTE-----LR 277 (422)
T ss_pred HHHH---hc-chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHH-----HH
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHH----HHHHHhcCchhHHHHHHHHHHhcC
Q 010994 297 LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAV----IIGYCNNGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 297 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~ 372 (496)
....... ..+.+.++..-+...+..+.++.+..=..+|.++ |...++.+..++|.+..-+|.+.|
T Consensus 278 ~lVk~~~-----------~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 278 TLVKKHS-----------ERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHH-----------HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.17 E-value=4e+02 Score=26.00 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=10.6
Q ss_pred cCCHHHHHHHHHHHH
Q 010994 144 QRQTDKALSHFRKMK 158 (496)
Q Consensus 144 ~g~~~~A~~~~~~m~ 158 (496)
.|+...|+.++++..
T Consensus 213 ~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 213 DGSVRDMLSFMEQAI 227 (484)
T ss_pred CChHHHHHHHHHHHH
Confidence 577777777777654
No 491
>PHA03100 ankyrin repeat protein; Provisional
Probab=31.53 E-value=4.9e+02 Score=25.24 Aligned_cols=233 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCChhhHHH--HHHH-----HHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHH--hhcCHHHHH
Q 010994 48 PELDNWVKNGNKVRVGELQR--IIRD-----LRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG--RVHGFLSAE 118 (496)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~--li~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~ 118 (496)
.+++.+...|..++...... .+.. ....|..+-+.-+++.-...+ .....-...+..++ ..|+.+...
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~---~~d~~g~tpL~~A~~~~~~~~~iv~ 125 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN---APDNNGITPLLYAISKKSNSYSIVE 125 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC---CCCCCCCchhhHHHhcccChHHHHH
Q ss_pred HHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH--HHHHHHHHhcCCCCcHHHHHHHHHHCC
Q 010994 119 SYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY--NDIMCLYSKTGQYEKVPDVLTEMKAKN 196 (496)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (496)
.+++.-...........+.+...++.|. .-.++++.+.+.|..++.... .+-+...+..| -.++.+.+.+.|
T Consensus 126 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~g 199 (480)
T PHA03100 126 YLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDNG 199 (480)
T ss_pred HHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHcC
Q ss_pred CCCChhhH--------HHHHHHHhhcCC--hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994 197 IFPDNFSY--------RICINSYGARSD--LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER 266 (496)
Q Consensus 197 ~~p~~~~~--------~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 266 (496)
..++.... .+.+...+..|+ .+-+..+++.=. ..+. .|..-.+.+..+..... .++++.+.+.
T Consensus 200 a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~-din~-~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~ 272 (480)
T PHA03100 200 ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV-PINI-KDVYGFTPLHYAVYNNN-----PEFVKYLLDL 272 (480)
T ss_pred CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC-CCCC-CCCCCCCHHHHHHHcCC-----HHHHHHHHHc
Q ss_pred cccCccchHH--HHHHHHHhcCCHHHHHHHHH
Q 010994 267 LEQKDGIGYN--FLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 267 ~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~ 296 (496)
|..++..... +-+......++.+-+..+++
T Consensus 273 gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 273 GANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 492
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.37 E-value=6.1e+02 Score=26.25 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALS 165 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 165 (496)
....+++++.+ ++...++.+++++...|+.+.
T Consensus 248 ~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 248 YLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 34456666554 888888888888888877543
No 493
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.82 E-value=3.2e+02 Score=22.84 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHhCC-CcHH-HHHHHHHh
Q 010994 417 PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM-YHAFIKANIRNG-KGVD-ELLDSMKA 477 (496)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g-~~a~-~~~~~m~~ 477 (496)
....+.++..|.-.|+++.|.++|..+...-+.|... |..=+..+.+.+ +.+. +.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 494
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.75 E-value=3.8e+02 Score=23.64 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 010994 147 TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE-KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILR 225 (496)
Q Consensus 147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 225 (496)
..+-++.++++.+...+ |-..|..-=......|++. .-+++.+.|....-+ +-..|..--=++...++++.-+.+..
T Consensus 94 L~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 44445555555554333 4444443333333334444 445555555543221 33333333333333445555555555
Q ss_pred HhhcCCCCCCCHHHHH
Q 010994 226 EMESQPHIVLDWSTYA 241 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~ 241 (496)
++. +.++ -|..+||
T Consensus 172 ~Ll-e~Di-~NNSAWN 185 (318)
T KOG0530|consen 172 ELL-EEDI-RNNSAWN 185 (318)
T ss_pred HHH-HHhh-hccchhh
Confidence 555 4444 3333443
No 495
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.52 E-value=6.3e+02 Score=26.16 Aligned_cols=19 Identities=5% Similarity=-0.200 Sum_probs=11.8
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 010994 318 MKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~ 336 (496)
...+..+.|...|++.-+.
T Consensus 298 tDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred cchhhHHHHHHHHHHHhcc
Confidence 3445566777777776654
No 496
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=30.32 E-value=3.9e+02 Score=23.72 Aligned_cols=147 Identities=14% Similarity=0.067 Sum_probs=69.6
Q ss_pred hccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHH----hhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHh----cC
Q 010994 74 KRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG----RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR----QR 145 (496)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g 145 (496)
..+.+..+...+......+. +.....+...+. ...+...|..+|....+.. .......|...|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-cHHHHHhHHHHHhcCCCccc
Confidence 34555666666666665431 222222222222 2334666777776444432 22333334444443 33
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-------CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh----c
Q 010994 146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG-------QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA----R 214 (496)
Q Consensus 146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 214 (496)
+..+|...|+..-+.|..+-..+...+...|..-. +...|...|.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 67777777777777765433222333333333321 2225666666665554 22223333333321 2
Q ss_pred CChHHHHHHHHHhh
Q 010994 215 SDLEGMEIILREME 228 (496)
Q Consensus 215 ~~~~~a~~~~~~~~ 228 (496)
.+..+|...|....
T Consensus 205 ~d~~~A~~wy~~Aa 218 (292)
T COG0790 205 RDLKKAFRWYKKAA 218 (292)
T ss_pred cCHHHHHHHHHHHH
Confidence 35556666666655
No 497
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=30.18 E-value=1.8e+02 Score=19.98 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHH
Q 010994 79 SQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFS 122 (496)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 122 (496)
..+.++|..+.+.+. ++|+....+...+...|+.+-+..+.+
T Consensus 37 ~~~~dlf~~Le~~~~--i~~~nl~~L~~lL~~i~R~DL~~~i~~ 78 (84)
T PF01335_consen 37 KSGLDLFEELEKRGL--ISPDNLSLLKELLKRIGRPDLLKKIEE 78 (84)
T ss_dssp SSHHHHHHHHHHTTS--SSTTBHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHcCC--CCCccHHHHHHHHHHhCHHHHHHHHHH
Confidence 457888888888875 677888888888888888877776654
No 498
>PLN03025 replication factor C subunit; Provisional
Probab=30.11 E-value=4.3e+02 Score=24.06 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=44.7
Q ss_pred hHHHHHHHH-HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhh-------hcCCCCCCCHHHHHHHHHHHhcc
Q 010994 359 QNAEAILED-LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY-------VEGKGWKPDPKVITSILSKLGDE 430 (496)
Q Consensus 359 ~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~p~~~~~~~l~~~~~~~ 430 (496)
++....+.. +.+.|+..+......++.. ..|+...++..++...... ..+..-.+.......++.++. .
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFT--ADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-K 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-c
Confidence 444444444 3456888888877777654 4588888888887544300 000001122223333444333 3
Q ss_pred CCHHHHHHHHHHHHh
Q 010994 431 GSVQDVEAFVAALRT 445 (496)
Q Consensus 431 g~~~~a~~~~~~~~~ 445 (496)
++.+.|...+..+..
T Consensus 238 ~~~~~a~~~l~~ll~ 252 (319)
T PLN03025 238 GKFDDACDGLKQLYD 252 (319)
T ss_pred CCHHHHHHHHHHHHH
Confidence 566777776665544
No 499
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=30.05 E-value=2.6e+02 Score=21.53 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 010994 63 GELQRIIRDLRKRKRFSQALEVSDWMNRKGI 93 (496)
Q Consensus 63 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 93 (496)
..+..++--+...|+++.|+++.+..++.|.
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 3455666667789999999999999999884
No 500
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.93 E-value=3.1e+02 Score=25.22 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCL 175 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 175 (496)
-|-.++......|.++..+.+|++....|-.|=...-..++..
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3444444444555555555555555555444444443333333
Done!