Query 010994
Match_columns 496
No_of_seqs 619 out of 2788
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 18:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-38 6.3E-43 315.0 43.1 416 59-486 81-585 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-36 1.2E-40 298.7 37.4 417 28-462 86-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-30 3E-34 238.5 45.2 381 68-465 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-28 4.5E-33 230.5 42.2 365 105-485 6-373 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.3E-31 8E-36 252.9 20.2 203 117-320 9-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 7.6E-31 2.6E-35 249.4 22.2 213 150-389 9-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.7E-24 5.8E-29 210.5 38.8 415 62-487 6-485 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.2E-25 1.8E-29 214.1 34.2 405 36-457 16-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 9.5E-24 3.2E-28 201.6 37.6 327 120-460 14-372 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 2.4E-23 8.2E-28 198.8 36.5 367 59-465 23-439 (450)
11 3fp2_A TPR repeat-containing p 99.9 3E-23 1E-27 202.9 36.9 404 61-478 24-491 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 3.5E-20 1.2E-24 171.1 38.2 318 133-463 5-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 4.6E-20 1.6E-24 170.3 35.6 317 61-386 2-349 (359)
14 3fp2_A TPR repeat-containing p 99.9 6E-20 2.1E-24 179.4 36.6 406 28-454 27-499 (537)
15 3hym_B Cell division cycle pro 99.9 6.2E-20 2.1E-24 167.3 30.0 289 165-465 21-319 (330)
16 3hym_B Cell division cycle pro 99.9 2.2E-19 7.6E-24 163.7 31.6 291 130-434 21-322 (330)
17 2ooe_A Cleavage stimulation fa 99.9 8.3E-18 2.9E-22 163.6 41.6 407 58-477 9-491 (530)
18 2xm6_A Protein corresponding t 99.9 2.4E-17 8.3E-22 158.7 44.0 381 59-474 36-463 (490)
19 1fch_A Peroxisomal targeting s 99.9 1.2E-19 4.2E-24 168.2 25.3 285 179-473 38-354 (368)
20 1fch_A Peroxisomal targeting s 99.9 1.1E-19 3.7E-24 168.5 23.9 287 110-402 37-355 (368)
21 2xm6_A Protein corresponding t 99.8 1.6E-16 5.6E-21 152.9 44.3 365 80-481 25-435 (490)
22 4eqf_A PEX5-related protein; a 99.8 3.4E-19 1.2E-23 165.0 19.3 255 201-465 65-341 (365)
23 4eqf_A PEX5-related protein; a 99.8 1.5E-18 5.1E-23 160.7 23.5 270 168-442 67-352 (365)
24 1b89_A Protein (clathrin heavy 99.8 2.7E-19 9.3E-24 162.2 14.9 281 110-438 15-303 (449)
25 2ooe_A Cleavage stimulation fa 99.8 4.9E-16 1.7E-20 151.1 38.9 371 96-479 11-455 (530)
26 4g1t_A Interferon-induced prot 99.8 3.9E-16 1.3E-20 149.8 36.4 391 58-486 47-468 (472)
27 3cv0_A Peroxisome targeting si 99.8 1.4E-17 4.8E-22 151.5 24.2 283 131-442 21-311 (327)
28 3cv0_A Peroxisome targeting si 99.8 1.8E-17 6.2E-22 150.7 24.3 260 203-474 23-311 (327)
29 4g1t_A Interferon-induced prot 99.8 8.5E-16 2.9E-20 147.4 35.2 348 60-445 92-458 (472)
30 3mkr_A Coatomer subunit epsilo 99.8 6.6E-17 2.2E-21 143.7 25.1 261 173-455 6-273 (291)
31 3mkr_A Coatomer subunit epsilo 99.8 5.4E-17 1.8E-21 144.2 23.9 271 107-398 8-286 (291)
32 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.9E-22 150.5 20.6 266 62-365 32-305 (449)
33 3spa_A Mtrpol, DNA-directed RN 99.8 2.4E-19 8.3E-24 175.4 7.0 152 63-251 128-286 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.8 4.8E-19 1.6E-23 173.4 8.0 150 131-286 127-286 (1134)
35 1xi4_A Clathrin heavy chain; a 99.8 2.5E-14 8.7E-19 144.9 41.3 359 46-465 966-1328(1630)
36 3uq3_A Heat shock protein STI1 99.7 8.5E-16 2.9E-20 134.4 24.0 223 203-445 7-235 (258)
37 1xi4_A Clathrin heavy chain; a 99.7 4.4E-14 1.5E-18 143.2 38.7 345 67-469 1054-1419(1630)
38 3uq3_A Heat shock protein STI1 99.7 2E-15 7E-20 132.0 25.5 238 237-492 5-254 (258)
39 3e4b_A ALGK; tetratricopeptide 99.7 5.3E-15 1.8E-19 140.1 26.5 371 66-476 7-419 (452)
40 2pl2_A Hypothetical conserved 99.7 3.2E-15 1.1E-19 126.8 20.9 199 199-404 3-212 (217)
41 2pl2_A Hypothetical conserved 99.7 5.8E-15 2E-19 125.3 21.7 196 235-441 3-209 (217)
42 3u4t_A TPR repeat-containing p 99.7 1.1E-14 3.7E-19 128.6 23.7 252 203-463 5-267 (272)
43 2ho1_A Type 4 fimbrial biogene 99.7 3.8E-14 1.3E-18 123.5 26.0 209 237-454 37-246 (252)
44 2vq2_A PILW, putative fimbrial 99.7 6.7E-14 2.3E-18 119.5 25.9 211 236-455 7-220 (225)
45 3u4t_A TPR repeat-containing p 99.7 1.9E-14 6.6E-19 127.0 22.8 235 98-336 3-250 (272)
46 2h6f_A Protein farnesyltransfe 99.7 3E-14 1E-18 130.8 24.6 249 202-463 98-365 (382)
47 2h6f_A Protein farnesyltransfe 99.7 5E-14 1.7E-18 129.3 25.2 239 237-489 97-357 (382)
48 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-14 4.4E-19 125.7 19.6 208 240-457 26-233 (243)
49 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-13 3.8E-18 120.5 23.8 211 272-492 37-250 (252)
50 2vq2_A PILW, putative fimbrial 99.6 1.6E-13 5.5E-18 117.1 24.3 213 270-492 6-223 (225)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-14 6E-19 127.4 18.8 245 180-440 19-269 (275)
52 2q7f_A YRRB protein; TPR, prot 99.6 4.2E-14 1.4E-18 122.4 20.6 210 270-490 21-232 (243)
53 1ouv_A Conserved hypothetical 99.6 7.7E-13 2.6E-17 116.7 28.6 219 203-445 8-250 (273)
54 1ouv_A Conserved hypothetical 99.6 8.9E-13 3.1E-17 116.3 28.4 224 130-372 5-252 (273)
55 3sf4_A G-protein-signaling mod 99.6 1.7E-14 6E-19 135.2 18.2 301 131-433 9-363 (406)
56 3e4b_A ALGK; tetratricopeptide 99.6 8.4E-14 2.9E-18 131.9 22.5 346 104-481 9-390 (452)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-13 6.2E-18 120.8 23.4 245 211-472 15-269 (275)
58 4e6h_A MRNA 3'-END-processing 99.6 1.1E-11 3.8E-16 121.4 37.7 430 49-491 54-581 (679)
59 3sf4_A G-protein-signaling mod 99.6 5.7E-14 2E-18 131.7 19.8 302 163-465 6-361 (406)
60 4a1s_A PINS, partner of inscut 99.6 1E-13 3.6E-18 130.2 18.7 285 131-445 48-371 (411)
61 4a1s_A PINS, partner of inscut 99.6 7.9E-14 2.7E-18 131.1 16.6 273 204-478 51-372 (411)
62 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4.2E-17 107.8 21.4 167 235-405 3-169 (184)
63 3ro2_A PINS homolog, G-protein 99.5 1.4E-13 5E-18 125.2 17.0 270 135-405 9-331 (338)
64 3ro2_A PINS homolog, G-protein 99.5 1.9E-13 6.5E-18 124.4 17.5 278 167-445 6-331 (338)
65 2ond_A Cleavage stimulation fa 99.5 1.6E-11 5.5E-16 110.2 27.2 187 254-448 81-272 (308)
66 2ond_A Cleavage stimulation fa 99.5 1.2E-11 4.3E-16 110.9 25.6 217 115-336 33-270 (308)
67 3ulq_A Response regulator aspa 99.5 4.6E-12 1.6E-16 117.7 23.3 296 141-445 22-367 (383)
68 4abn_A Tetratricopeptide repea 99.5 7.2E-13 2.5E-17 126.3 18.0 206 253-470 84-313 (474)
69 3vtx_A MAMA; tetratricopeptide 99.5 4E-12 1.4E-16 104.7 20.1 166 271-445 4-169 (184)
70 3ulq_A Response regulator aspa 99.5 1.1E-12 3.8E-17 121.9 18.6 164 239-405 186-367 (383)
71 4abn_A Tetratricopeptide repea 99.5 7.4E-13 2.5E-17 126.3 16.3 213 112-330 82-315 (474)
72 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-13 4.1E-18 124.3 9.8 247 130-405 26-306 (311)
73 4e6h_A MRNA 3'-END-processing 99.5 6.6E-10 2.2E-14 109.0 35.2 393 77-479 47-534 (679)
74 1hz4_A MALT regulatory protein 99.4 3.8E-11 1.3E-15 111.1 25.3 167 133-299 16-201 (373)
75 3q15_A PSP28, response regulat 99.4 6.4E-11 2.2E-15 109.7 26.2 307 129-444 8-363 (378)
76 3nf1_A KLC 1, kinesin light ch 99.4 5.6E-13 1.9E-17 119.9 11.7 241 237-477 27-306 (311)
77 1hz4_A MALT regulatory protein 99.4 3E-10 1E-14 105.0 28.2 195 105-299 21-242 (373)
78 4i17_A Hypothetical protein; T 99.4 1.1E-10 3.7E-15 99.8 20.9 99 237-336 7-105 (228)
79 3q15_A PSP28, response regulat 99.4 8.4E-11 2.9E-15 108.9 21.7 163 239-405 184-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.3 8.7E-11 3E-15 96.5 18.5 129 203-335 10-138 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 5.5E-11 1.9E-15 118.0 19.5 166 236-405 8-173 (723)
82 3as5_A MAMA; tetratricopeptide 99.3 1.9E-10 6.3E-15 94.5 19.7 164 238-405 9-172 (186)
83 3edt_B KLC 2, kinesin light ch 99.3 5.4E-11 1.8E-15 105.2 16.3 228 177-405 12-280 (283)
84 4gyw_A UDP-N-acetylglucosamine 99.3 2E-10 6.8E-15 114.0 20.8 165 271-445 8-173 (723)
85 4i17_A Hypothetical protein; T 99.3 2.1E-10 7.2E-15 97.9 18.4 207 270-492 5-221 (228)
86 1qqe_A Vesicular transport pro 99.3 2.8E-10 9.5E-15 101.2 19.7 234 183-444 2-267 (292)
87 3mv2_B Coatomer subunit epsilo 99.2 1.5E-09 5.1E-14 94.5 21.1 246 211-486 23-288 (310)
88 3mv2_B Coatomer subunit epsilo 99.2 5.5E-09 1.9E-13 90.9 24.1 240 143-405 25-281 (310)
89 3edt_B KLC 2, kinesin light ch 99.2 2E-10 6.8E-15 101.5 15.5 233 212-445 12-280 (283)
90 1qqe_A Vesicular transport pro 99.1 2.9E-09 9.9E-14 94.5 18.3 209 181-404 32-267 (292)
91 2uy1_A Cleavage stimulation fa 99.1 1.5E-07 5.2E-12 89.5 31.0 362 74-476 6-411 (493)
92 3urz_A Uncharacterized protein 99.1 3.6E-09 1.2E-13 88.6 17.5 167 243-421 10-194 (208)
93 3qky_A Outer membrane assembly 99.1 6E-09 2E-13 90.9 19.4 189 235-451 13-229 (261)
94 3qky_A Outer membrane assembly 99.1 3.6E-09 1.2E-13 92.3 17.4 186 199-405 13-223 (261)
95 2fo7_A Synthetic consensus TPR 99.1 4.6E-09 1.6E-13 80.9 15.6 129 309-445 3-131 (136)
96 4ga2_A E3 SUMO-protein ligase 99.1 6.8E-10 2.3E-14 87.6 10.7 143 314-465 4-148 (150)
97 2fo7_A Synthetic consensus TPR 99.1 8.3E-09 2.8E-13 79.4 16.9 129 274-405 3-131 (136)
98 2pzi_A Probable serine/threoni 99.1 9.4E-09 3.2E-13 102.5 20.0 173 248-432 402-583 (681)
99 3dra_A Protein farnesyltransfe 99.0 2.2E-07 7.5E-12 81.8 25.8 219 218-445 50-286 (306)
100 3urz_A Uncharacterized protein 99.0 8E-09 2.7E-13 86.5 15.8 161 276-446 8-186 (208)
101 2pzi_A Probable serine/threoni 99.0 1.2E-08 4.1E-13 101.8 19.4 176 212-392 402-583 (681)
102 3dra_A Protein farnesyltransfe 99.0 1.8E-07 6E-12 82.4 24.6 213 254-476 50-285 (306)
103 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.9E-08 1.7E-12 82.9 20.4 188 236-448 3-215 (225)
104 2r5s_A Uncharacterized protein 99.0 1.1E-08 3.6E-13 83.3 15.4 162 100-265 8-172 (176)
105 4ga2_A E3 SUMO-protein ligase 99.0 2.8E-09 9.6E-14 84.0 11.2 142 246-391 6-148 (150)
106 2r5s_A Uncharacterized protein 99.0 7.6E-09 2.6E-13 84.1 13.4 161 241-405 10-172 (176)
107 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.2E-07 4.3E-12 80.3 21.4 186 200-405 3-212 (225)
108 2uy1_A Cleavage stimulation fa 99.0 8.1E-07 2.8E-11 84.5 28.5 375 63-465 16-450 (493)
109 2vsy_A XCC0866; transferase, g 99.0 1.6E-08 5.3E-13 99.1 16.9 152 250-405 2-156 (568)
110 2ifu_A Gamma-SNAP; membrane fu 99.0 1.2E-08 4.2E-13 91.2 14.8 96 75-194 4-104 (307)
111 3qou_A Protein YBBN; thioredox 98.9 1.9E-08 6.6E-13 88.9 15.4 162 99-264 118-282 (287)
112 3qou_A Protein YBBN; thioredox 98.9 2.7E-08 9.4E-13 87.9 16.3 164 238-404 118-282 (287)
113 3rjv_A Putative SEL1 repeat pr 98.9 2.6E-07 8.7E-12 77.5 20.3 176 116-302 4-198 (212)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 2.5E-08 8.6E-13 89.2 14.8 229 179-439 4-254 (307)
115 2vsy_A XCC0866; transferase, g 98.9 3.3E-08 1.1E-12 96.8 16.5 165 214-384 2-169 (568)
116 4gco_A Protein STI-1; structur 98.9 1.1E-07 3.6E-12 72.2 14.5 108 344-459 15-123 (126)
117 3u3w_A Transcriptional activat 98.9 1E-06 3.5E-11 78.1 23.1 168 278-445 81-265 (293)
118 3u3w_A Transcriptional activat 98.8 5.3E-07 1.8E-11 79.9 20.9 62 344-405 198-265 (293)
119 3rjv_A Putative SEL1 repeat pr 98.8 1.9E-07 6.5E-12 78.3 17.0 174 255-445 4-196 (212)
120 1na0_A Designed protein CTPR3; 98.8 2.8E-07 9.7E-12 69.5 15.2 115 343-464 10-124 (125)
121 3q7a_A Farnesyltransferase alp 98.8 1.8E-06 6.2E-11 76.8 21.5 174 73-252 65-257 (349)
122 4gco_A Protein STI-1; structur 98.8 2.4E-07 8.3E-12 70.2 13.5 111 378-496 14-126 (126)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 2.6E-06 8.9E-11 75.4 22.4 170 274-444 77-264 (293)
124 3q7a_A Farnesyltransferase alp 98.8 3.8E-06 1.3E-10 74.7 23.0 228 250-488 67-340 (349)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5E-07 1.7E-11 75.8 16.5 135 309-449 8-153 (213)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.9E-11 73.6 18.4 92 205-302 10-101 (213)
127 3dss_A Geranylgeranyl transfer 98.7 1.1E-05 3.8E-10 71.4 25.2 197 254-461 91-319 (331)
128 3gyz_A Chaperone protein IPGC; 98.7 1.3E-07 4.6E-12 74.0 11.5 95 309-405 38-132 (151)
129 2c2l_A CHIP, carboxy terminus 98.7 1.1E-07 3.9E-12 83.6 12.1 194 236-445 3-198 (281)
130 2lni_A Stress-induced-phosphop 98.7 2.9E-07 9.8E-12 70.5 12.9 116 342-464 16-131 (133)
131 2qfc_A PLCR protein; TPR, HTH, 98.7 1.7E-06 5.7E-11 76.7 19.3 167 239-405 77-265 (293)
132 3gw4_A Uncharacterized protein 98.7 4.4E-07 1.5E-11 75.4 14.6 61 345-405 110-175 (203)
133 1a17_A Serine/threonine protei 98.7 7.1E-07 2.4E-11 71.3 15.4 128 308-444 14-144 (166)
134 2vyi_A SGTA protein; chaperone 98.7 6.3E-07 2.1E-11 68.2 14.3 116 343-465 13-128 (131)
135 2e2e_A Formate-dependent nitri 98.7 1.7E-07 5.9E-12 76.1 11.5 125 318-450 21-148 (177)
136 3gw4_A Uncharacterized protein 98.7 1.8E-07 6.3E-12 77.7 11.8 161 284-445 4-175 (203)
137 1a17_A Serine/threonine protei 98.7 9E-07 3.1E-11 70.7 15.3 129 274-405 15-145 (166)
138 2c2l_A CHIP, carboxy terminus 98.6 1.5E-07 5.3E-12 82.7 11.0 193 202-405 5-198 (281)
139 4f3v_A ESX-1 secretion system 98.6 3.7E-07 1.3E-11 78.4 12.3 201 249-459 18-249 (282)
140 3gyz_A Chaperone protein IPGC; 98.6 4.9E-07 1.7E-11 70.7 12.0 99 342-448 36-135 (151)
141 2vgx_A Chaperone SYCD; alterna 98.6 2.2E-07 7.6E-12 72.8 10.1 99 342-448 21-120 (148)
142 2e2e_A Formate-dependent nitri 98.6 2.8E-07 9.5E-12 74.8 11.1 119 284-405 22-143 (177)
143 1elw_A TPR1-domain of HOP; HOP 98.6 1.6E-06 5.5E-11 64.5 14.4 110 344-460 6-115 (118)
144 2vgx_A Chaperone SYCD; alterna 98.6 9.6E-08 3.3E-12 74.9 7.6 107 364-477 9-117 (148)
145 1na0_A Designed protein CTPR3; 98.6 1.5E-06 5.1E-11 65.4 14.2 95 275-371 12-106 (125)
146 4f3v_A ESX-1 secretion system 98.6 3.3E-07 1.1E-11 78.7 11.1 186 110-301 18-237 (282)
147 3upv_A Heat shock protein STI1 98.6 1.7E-06 5.7E-11 65.5 14.0 94 345-446 7-101 (126)
148 2lni_A Stress-induced-phosphop 98.6 1.8E-06 6.1E-11 65.9 14.1 95 167-264 17-111 (133)
149 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4E-11 66.6 12.9 117 273-392 13-129 (131)
150 2kck_A TPR repeat; tetratricop 98.6 2.1E-06 7.2E-11 63.2 13.5 103 341-450 5-110 (112)
151 1p5q_A FKBP52, FK506-binding p 98.5 2.1E-06 7.2E-11 77.6 15.2 93 377-475 196-291 (336)
152 3dss_A Geranylgeranyl transfer 98.5 4.9E-05 1.7E-09 67.3 22.9 219 255-486 48-310 (331)
153 1p5q_A FKBP52, FK506-binding p 98.5 2.3E-06 7.7E-11 77.4 14.8 147 236-405 146-293 (336)
154 2xcb_A PCRH, regulatory protei 98.5 1.8E-06 6.2E-11 67.0 12.1 95 345-446 21-115 (142)
155 4b4t_Q 26S proteasome regulato 98.5 2.2E-05 7.6E-10 73.8 21.6 166 240-405 58-244 (434)
156 4gcn_A Protein STI-1; structur 98.5 1.9E-06 6.6E-11 65.3 11.6 95 346-444 12-110 (127)
157 4gcn_A Protein STI-1; structur 98.5 2.7E-06 9.3E-11 64.5 12.1 107 309-423 10-122 (127)
158 3upv_A Heat shock protein STI1 98.5 4.8E-06 1.6E-10 63.0 13.5 96 308-405 5-100 (126)
159 3sz7_A HSC70 cochaperone (SGT) 98.5 2.7E-06 9.3E-11 67.9 12.6 94 345-446 14-108 (164)
160 2dba_A Smooth muscle cell asso 98.4 6.2E-06 2.1E-10 64.2 14.2 111 342-460 28-142 (148)
161 2fbn_A 70 kDa peptidylprolyl i 98.4 4.2E-06 1.5E-10 69.1 13.9 96 378-479 89-187 (198)
162 3q49_B STIP1 homology and U bo 98.4 4.9E-06 1.7E-10 63.9 12.9 95 343-444 10-104 (137)
163 2fbn_A 70 kDa peptidylprolyl i 98.4 5.2E-07 1.8E-11 74.7 7.7 87 343-437 89-176 (198)
164 2xcb_A PCRH, regulatory protei 98.4 3.8E-06 1.3E-10 65.1 12.1 97 238-336 19-115 (142)
165 1elw_A TPR1-domain of HOP; HOP 98.4 6.2E-06 2.1E-10 61.2 12.7 105 376-488 3-109 (118)
166 2kck_A TPR repeat; tetratricop 98.4 7.1E-06 2.4E-10 60.2 11.9 94 101-195 9-106 (112)
167 4b4t_Q 26S proteasome regulato 98.4 3.1E-05 1.1E-09 72.8 19.1 167 169-335 58-244 (434)
168 1hxi_A PEX5, peroxisome target 98.3 6.1E-06 2.1E-10 61.9 11.5 93 345-445 20-113 (121)
169 1elr_A TPR2A-domain of HOP; HO 98.3 1E-05 3.5E-10 61.3 12.9 109 345-458 7-119 (131)
170 2xev_A YBGF; tetratricopeptide 98.3 2.4E-05 8.2E-10 59.2 14.6 97 348-452 8-111 (129)
171 2dba_A Smooth muscle cell asso 98.3 1.5E-05 5.2E-10 62.0 13.6 107 376-491 27-139 (148)
172 3ro3_A PINS homolog, G-protein 98.3 5.3E-06 1.8E-10 65.7 10.7 101 344-445 51-157 (164)
173 1hxi_A PEX5, peroxisome target 98.3 6.4E-06 2.2E-10 61.8 10.3 94 310-405 20-113 (121)
174 1elr_A TPR2A-domain of HOP; HO 98.3 9.6E-06 3.3E-10 61.4 11.5 59 240-299 7-65 (131)
175 3q49_B STIP1 homology and U bo 98.3 2.4E-05 8.2E-10 60.0 13.5 97 237-335 9-105 (137)
176 3sz7_A HSC70 cochaperone (SGT) 98.2 2.4E-05 8.3E-10 62.2 13.6 97 238-336 12-108 (164)
177 3rkv_A Putative peptidylprolyl 98.2 6.5E-06 2.2E-10 65.5 9.9 69 377-451 63-131 (162)
178 2xev_A YBGF; tetratricopeptide 98.2 4.5E-05 1.5E-09 57.7 13.9 92 312-405 7-104 (129)
179 3ro3_A PINS homolog, G-protein 98.2 1.9E-05 6.5E-10 62.4 12.2 62 239-300 11-77 (164)
180 1wao_1 Serine/threonine protei 98.2 1.1E-05 3.6E-10 76.7 12.1 119 315-442 14-135 (477)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.8E-05 6.2E-10 74.8 12.8 83 377-465 317-399 (457)
182 1dce_A Protein (RAB geranylger 98.1 0.00016 5.5E-09 69.9 18.9 170 287-465 44-240 (567)
183 1wao_1 Serine/threonine protei 98.1 2.6E-05 9.1E-10 74.0 12.8 119 209-331 14-134 (477)
184 1dce_A Protein (RAB geranylger 98.1 0.00012 4E-09 70.9 17.2 170 116-290 47-244 (567)
185 2hr2_A Hypothetical protein; a 98.1 0.00012 4E-09 56.7 13.7 80 344-424 59-149 (159)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 7.3E-05 2.5E-09 70.6 15.2 122 238-361 269-404 (457)
187 3k9i_A BH0479 protein; putativ 98.1 1.3E-05 4.5E-10 59.6 8.2 90 355-450 3-94 (117)
188 3rkv_A Putative peptidylprolyl 98.1 2.3E-05 7.9E-10 62.2 10.1 113 377-491 11-138 (162)
189 3k9i_A BH0479 protein; putativ 98.1 5E-06 1.7E-10 61.9 5.8 85 320-405 3-89 (117)
190 1ihg_A Cyclophilin 40; ppiase 98.1 1.7E-05 5.9E-10 72.4 10.2 82 377-465 273-355 (370)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.9E-10 71.6 9.3 145 308-477 180-327 (338)
192 1ihg_A Cyclophilin 40; ppiase 98.0 9.4E-05 3.2E-09 67.5 13.3 27 239-265 225-251 (370)
193 2l6j_A TPR repeat-containing p 97.9 7.8E-06 2.7E-10 60.0 4.1 61 344-405 6-66 (111)
194 1na3_A Designed protein CTPR2; 97.9 0.00015 5.1E-09 50.6 10.5 84 376-465 8-91 (91)
195 2hr2_A Hypothetical protein; a 97.9 0.00027 9.1E-09 54.7 12.3 95 240-335 14-130 (159)
196 2if4_A ATFKBP42; FKBP-like, al 97.9 3.5E-05 1.2E-09 69.6 8.1 148 272-446 179-328 (338)
197 2kat_A Uncharacterized protein 97.8 0.00017 5.9E-09 53.1 10.3 77 361-444 4-80 (115)
198 1zu2_A Mitochondrial import re 97.8 7.8E-05 2.7E-09 57.6 7.4 98 320-426 15-133 (158)
199 1klx_A Cysteine rich protein B 97.7 0.00085 2.9E-08 51.3 13.1 87 313-405 31-125 (138)
200 3n71_A Histone lysine methyltr 97.7 0.00012 4.2E-09 69.0 9.7 129 317-445 319-463 (490)
201 2l6j_A TPR repeat-containing p 97.7 0.0003 1E-08 51.2 9.9 92 376-473 3-102 (111)
202 1zu2_A Mitochondrial import re 97.7 5.7E-05 1.9E-09 58.3 5.8 98 109-209 13-132 (158)
203 3n71_A Histone lysine methyltr 97.7 0.00018 6.1E-09 67.9 10.0 125 281-405 318-463 (490)
204 1klx_A Cysteine rich protein B 97.7 0.00092 3.2E-08 51.1 12.4 111 76-196 9-127 (138)
205 2kat_A Uncharacterized protein 97.6 0.00038 1.3E-08 51.3 9.4 78 184-264 3-80 (115)
206 1na3_A Designed protein CTPR2; 97.6 0.0011 3.6E-08 46.1 10.5 62 343-405 10-71 (91)
207 3ma5_A Tetratricopeptide repea 97.4 0.001 3.5E-08 47.5 9.0 64 236-300 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.4 0.0019 6.5E-08 46.0 10.4 63 342-405 7-69 (100)
209 3ly7_A Transcriptional activat 97.4 0.0053 1.8E-07 54.6 14.8 75 339-422 274-348 (372)
210 3ly7_A Transcriptional activat 97.2 0.0061 2.1E-07 54.2 13.6 63 130-194 276-338 (372)
211 2kc7_A BFR218_protein; tetratr 97.0 0.0009 3.1E-08 47.5 4.9 56 349-405 7-63 (99)
212 3mkq_A Coatomer beta'-subunit; 96.9 0.028 9.6E-07 57.3 17.3 26 202-227 682-707 (814)
213 3qww_A SET and MYND domain-con 96.9 0.0025 8.5E-08 59.1 8.2 92 354-445 310-410 (433)
214 3qwp_A SET and MYND domain-con 96.8 0.0087 3E-07 55.5 11.1 97 349-445 294-399 (429)
215 2kc7_A BFR218_protein; tetratr 96.8 0.012 4.2E-07 41.4 9.7 65 383-454 6-72 (99)
216 3qwp_A SET and MYND domain-con 96.6 0.012 4.1E-07 54.6 10.7 89 106-194 295-399 (429)
217 3mkq_A Coatomer beta'-subunit; 96.5 0.021 7.1E-07 58.3 12.9 154 70-263 607-762 (814)
218 3qww_A SET and MYND domain-con 96.5 0.006 2E-07 56.5 7.6 62 167-228 341-409 (433)
219 2v5f_A Prolyl 4-hydroxylase su 96.5 0.06 2.1E-06 38.3 11.4 80 376-455 4-84 (104)
220 3mkq_B Coatomer subunit alpha; 96.3 0.26 8.8E-06 38.6 14.8 25 131-155 34-58 (177)
221 1wy6_A Hypothetical protein ST 96.3 0.21 7.1E-06 36.7 15.4 60 345-405 94-153 (172)
222 3mkq_B Coatomer subunit alpha; 96.2 0.3 1E-05 38.2 15.9 129 139-298 13-141 (177)
223 3bee_A Putative YFRE protein; 96.2 0.028 9.4E-07 39.1 8.1 69 374-449 3-75 (93)
224 3bee_A Putative YFRE protein; 96.2 0.064 2.2E-06 37.2 10.0 62 416-477 5-71 (93)
225 1pc2_A Mitochondria fission pr 96.2 0.031 1.1E-06 42.6 8.8 64 341-405 31-99 (152)
226 1pc2_A Mitochondria fission pr 96.1 0.078 2.7E-06 40.4 10.7 92 357-455 13-109 (152)
227 2v5f_A Prolyl 4-hydroxylase su 95.9 0.061 2.1E-06 38.3 8.9 62 344-405 7-74 (104)
228 3u64_A Protein TP_0956; tetrat 95.6 0.054 1.9E-06 46.2 8.7 89 114-202 179-278 (301)
229 4h7y_A Dual specificity protei 95.5 0.23 7.9E-06 37.4 10.6 54 321-375 74-127 (161)
230 3lvg_A Clathrin heavy chain 1; 95.5 6.2E-06 2.1E-10 74.6 -16.3 117 62-192 54-170 (624)
231 4h7y_A Dual specificity protei 95.0 0.42 1.4E-05 36.0 10.7 103 236-340 12-127 (161)
232 1v54_E Cytochrome C oxidase po 94.8 0.31 1.1E-05 33.6 8.7 64 392-460 25-88 (109)
233 1nzn_A CGI-135 protein, fissio 94.6 0.57 1.9E-05 34.3 10.5 94 353-453 12-110 (126)
234 2ff4_A Probable regulatory pro 94.6 0.44 1.5E-05 43.4 12.3 116 75-205 128-249 (388)
235 3lvg_A Clathrin heavy chain 1; 94.5 0.025 8.5E-07 51.8 3.7 121 60-188 81-221 (624)
236 3u64_A Protein TP_0956; tetrat 94.5 0.31 1.1E-05 41.6 10.1 64 273-336 200-269 (301)
237 4b4t_P 26S proteasome regulato 94.2 3.5 0.00012 38.3 19.8 151 311-465 141-307 (445)
238 1wy6_A Hypothetical protein ST 93.8 1.4 4.9E-05 32.4 16.1 136 283-445 18-153 (172)
239 4ady_A RPN2, 26S proteasome re 93.5 7.3 0.00025 39.6 26.4 26 134-159 233-258 (963)
240 4b4t_P 26S proteasome regulato 93.4 4.9 0.00017 37.3 19.5 99 346-445 141-246 (445)
241 2ff4_A Probable regulatory pro 93.3 0.3 1E-05 44.5 8.7 77 346-423 175-251 (388)
242 2y69_E Cytochrome C oxidase su 93.3 0.84 2.9E-05 33.4 8.9 63 393-460 69-131 (152)
243 4gns_B Protein CSD3, chitin bi 93.2 0.52 1.8E-05 46.6 10.5 51 426-476 346-398 (754)
244 1nzn_A CGI-135 protein, fissio 92.9 0.57 2E-05 34.2 7.8 82 323-405 17-102 (126)
245 4ady_A RPN2, 26S proteasome re 92.7 9.5 0.00033 38.8 27.3 257 210-477 383-657 (963)
246 4fhn_B Nucleoporin NUP120; pro 92.1 3.1 0.00011 44.1 15.5 144 206-358 817-987 (1139)
247 4gns_B Protein CSD3, chitin bi 91.5 1.1 3.8E-05 44.3 10.5 54 279-333 344-397 (754)
248 3txn_A 26S proteasome regulato 89.5 12 0.0004 33.9 25.2 165 204-369 22-208 (394)
249 3txn_A 26S proteasome regulato 89.2 12 0.00043 33.7 19.7 241 239-485 21-290 (394)
250 3ffl_A Anaphase-promoting comp 89.0 3.3 0.00011 31.9 9.0 27 418-444 123-149 (167)
251 4fhn_B Nucleoporin NUP120; pro 88.5 21 0.00073 37.7 18.0 143 67-217 817-987 (1139)
252 4b4t_R RPN7, 26S proteasome re 87.2 6.5 0.00022 36.2 11.8 62 344-405 133-196 (429)
253 3o48_A Mitochondria fission 1 86.1 4 0.00014 30.0 7.6 81 49-130 26-110 (134)
254 1wdy_A 2-5A-dependent ribonucl 85.6 6.3 0.00021 33.5 10.4 20 104-123 42-61 (285)
255 4g8k_A 2-5A-dependent ribonucl 85.4 18 0.00063 31.7 15.1 54 66-123 26-81 (337)
256 1wdy_A 2-5A-dependent ribonucl 85.0 11 0.00038 31.9 11.7 14 137-150 8-21 (285)
257 1n11_A Ankyrin; clathrin, BAND 85.0 10 0.00034 34.9 12.1 208 67-296 16-233 (437)
258 3ffl_A Anaphase-promoting comp 84.6 9.2 0.00032 29.4 9.3 21 313-333 128-148 (167)
259 4b4t_R RPN7, 26S proteasome re 84.5 8.6 0.00029 35.4 11.1 99 167-265 132-236 (429)
260 3o48_A Mitochondria fission 1 84.3 10 0.00035 27.9 9.3 46 360-405 61-106 (134)
261 1qsa_A Protein (soluble lytic 81.4 41 0.0014 32.6 24.7 76 171-253 77-152 (618)
262 3lpz_A GET4 (YOR164C homolog); 79.8 31 0.0011 30.3 23.0 27 304-330 133-159 (336)
263 1zbp_A Hypothetical protein VP 79.3 8.6 0.00029 32.4 8.0 55 316-371 6-60 (273)
264 1v54_E Cytochrome C oxidase po 79.2 13 0.00046 25.7 10.0 44 220-264 29-72 (109)
265 1zbp_A Hypothetical protein VP 78.0 5.3 0.00018 33.6 6.4 55 210-266 6-60 (273)
266 3esl_A Checkpoint serine/threo 77.1 24 0.00082 28.2 9.6 68 132-200 81-149 (202)
267 1qsa_A Protein (soluble lytic 76.9 56 0.0019 31.7 27.9 49 384-440 388-436 (618)
268 3lpz_A GET4 (YOR164C homolog); 76.3 40 0.0014 29.6 21.3 82 235-335 134-215 (336)
269 1k1a_A B-cell lymphoma 3-encod 75.9 31 0.0011 28.1 11.2 85 138-227 13-102 (241)
270 2wpv_A GET4, UPF0363 protein Y 74.8 42 0.0014 29.1 21.4 168 133-334 35-215 (312)
271 1y8m_A FIS1; mitochondria, unk 74.6 24 0.00083 26.3 11.6 24 382-405 82-105 (144)
272 2y69_E Cytochrome C oxidase su 73.9 24 0.00082 26.0 10.0 45 220-265 72-116 (152)
273 3eu9_A Huntingtin-interacting 73.7 23 0.00077 28.9 9.7 13 353-365 218-230 (240)
274 2p58_C Putative type III secre 72.0 12 0.00041 25.8 5.7 16 77-92 22-37 (116)
275 3e3v_A Regulatory protein RECX 71.3 26 0.0009 27.4 8.7 79 24-106 30-108 (177)
276 2uwj_G Type III export protein 69.6 11 0.00039 25.9 5.1 16 77-92 21-36 (115)
277 3kea_A K1L; tropism, ANK repea 68.3 55 0.0019 27.8 11.6 10 141-150 38-47 (285)
278 3eu9_A Huntingtin-interacting 67.0 44 0.0015 27.0 10.0 9 388-396 218-226 (240)
279 3eiq_C Programmed cell death p 67.0 41 0.0014 29.8 9.9 24 240-263 57-80 (358)
280 3ltm_A Alpha-REP4; protein eng 64.6 52 0.0018 26.2 15.1 142 270-432 31-172 (211)
281 4a1g_A Mitotic checkpoint seri 63.6 46 0.0016 25.2 8.9 50 150-199 84-134 (152)
282 3eiq_C Programmed cell death p 63.1 13 0.00045 33.0 5.9 25 134-158 57-81 (358)
283 1k1a_A B-cell lymphoma 3-encod 62.6 61 0.0021 26.3 10.9 24 69-92 13-36 (241)
284 2uwj_G Type III export protein 61.9 36 0.0012 23.5 6.8 80 111-196 19-98 (115)
285 3hra_A Ankyrin repeat family p 61.6 38 0.0013 26.6 8.4 12 213-224 81-92 (201)
286 1y8m_A FIS1; mitochondria, unk 61.4 48 0.0016 24.7 12.0 73 374-453 36-113 (144)
287 2p58_C Putative type III secre 61.0 38 0.0013 23.4 7.5 81 110-196 19-99 (116)
288 3jxi_A Vanilloid receptor-rela 60.9 15 0.0005 30.8 5.9 18 352-369 232-249 (260)
289 2wvi_A Mitotic checkpoint seri 58.8 59 0.002 24.9 9.2 52 150-201 79-131 (164)
290 2d2s_A Exocyst complex compone 58.6 58 0.002 26.8 8.8 91 66-158 22-118 (235)
291 1n11_A Ankyrin; clathrin, BAND 55.5 1.2E+02 0.0041 27.5 15.6 293 48-376 28-338 (437)
292 3kea_A K1L; tropism, ANK repea 54.9 96 0.0033 26.2 11.3 183 177-379 39-225 (285)
293 2wpv_A GET4, UPF0363 protein Y 54.6 1.1E+02 0.0037 26.6 24.5 181 70-299 21-215 (312)
294 3ljn_A Hypothetical protein; a 53.2 96 0.0033 27.3 10.3 87 130-226 17-106 (364)
295 2nsz_A Programmed cell death p 52.5 45 0.0015 24.3 6.5 61 379-445 9-71 (129)
296 3esl_A Checkpoint serine/threo 50.8 93 0.0032 24.8 11.1 49 392-445 94-143 (202)
297 3d5l_A Regulatory protein RECX 48.3 71 0.0024 26.0 7.7 66 26-92 75-140 (221)
298 2fe3_A Peroxide operon regulat 48.3 82 0.0028 23.4 8.1 62 155-217 11-72 (145)
299 3hra_A Ankyrin repeat family p 48.2 95 0.0032 24.1 9.6 15 362-376 158-172 (201)
300 1mzb_A Ferric uptake regulatio 47.8 80 0.0027 23.2 7.9 61 156-217 8-69 (136)
301 2ion_A PDCD4, programmed cell 47.3 57 0.002 24.7 6.5 61 379-445 11-73 (152)
302 2xig_A Ferric uptake regulatio 47.2 88 0.003 23.5 8.7 62 155-217 16-77 (150)
303 2zu6_B Programmed cell death p 45.7 51 0.0017 28.5 6.7 59 346-405 170-230 (307)
304 3aji_A 26S proteasome non-ATPa 45.6 1.1E+02 0.0039 24.4 10.7 18 106-123 11-28 (231)
305 2pnn_A Transient receptor pote 45.2 81 0.0028 26.3 8.1 20 177-196 21-40 (273)
306 3eyy_A Putative iron uptake re 45.2 81 0.0028 23.5 7.1 59 156-216 9-67 (145)
307 3b7b_A Euchromatic histone-lys 44.7 56 0.0019 26.5 6.8 19 317-335 217-235 (237)
308 2w57_A Ferric uptake regulatio 44.4 94 0.0032 23.3 7.4 62 155-217 6-68 (150)
309 1s6c_A KV4 potassium channel-i 44.0 70 0.0024 24.6 7.0 26 201-226 156-181 (183)
310 4gq2_M Nucleoporin NUP120; bet 42.8 90 0.0031 32.3 9.1 52 348-404 816-867 (950)
311 3aji_A 26S proteasome non-ATPa 42.1 1.3E+02 0.0045 24.0 9.3 53 243-296 9-61 (231)
312 3kae_A CDC27, possible protein 42.0 1.1E+02 0.0037 23.7 7.0 51 246-296 71-138 (242)
313 2zu6_B Programmed cell death p 41.8 47 0.0016 28.7 5.9 64 420-483 169-236 (307)
314 4aez_C MAD3, mitotic spindle c 41.2 84 0.0029 25.6 6.8 52 148-199 131-183 (223)
315 2fu4_A Ferric uptake regulatio 40.4 74 0.0025 20.6 7.8 60 156-216 7-67 (83)
316 4fke_A Aminopeptidase N; zinc 39.3 3.3E+02 0.011 27.9 15.1 156 311-477 690-859 (909)
317 3ljn_A Hypothetical protein; a 39.1 1.1E+02 0.0039 26.8 8.4 96 61-163 17-113 (364)
318 3jxi_A Vanilloid receptor-rela 38.1 86 0.0029 25.8 7.1 55 138-192 9-72 (260)
319 2ijq_A Hypothetical protein; s 37.8 1E+02 0.0034 23.6 6.4 60 134-194 36-103 (161)
320 3b7b_A Euchromatic histone-lys 37.1 1.4E+02 0.0049 23.9 8.2 53 314-370 181-235 (237)
321 4gq2_M Nucleoporin NUP120; bet 36.8 1.9E+02 0.0066 29.8 10.4 48 309-356 899-950 (950)
322 4ets_A Ferric uptake regulatio 36.7 1.4E+02 0.0048 22.7 7.6 69 148-217 14-85 (162)
323 4fjo_A DNA repair protein REV1 36.4 80 0.0027 21.6 5.2 46 45-90 13-61 (97)
324 2b7e_A PRE-mRNA processing pro 36.1 49 0.0017 20.2 3.5 29 254-282 3-31 (59)
325 3ubw_A 14-3-3E, 14-3-3 protein 35.5 2E+02 0.0067 24.1 9.2 166 278-445 37-227 (261)
326 1ug3_A EIF4GI, eukaryotic prot 34.5 44 0.0015 29.5 4.7 24 135-158 15-38 (339)
327 1oyz_A Hypothetical protein YI 34.0 2E+02 0.007 23.9 21.5 136 340-494 140-277 (280)
328 3dfg_A Xcrecx, regulatory prot 33.8 1.6E+02 0.0053 22.5 7.4 64 27-92 32-95 (162)
329 2ion_A PDCD4, programmed cell 33.3 1.5E+02 0.0053 22.3 7.7 22 277-298 14-35 (152)
330 3bu8_A Telomeric repeat-bindin 32.8 1.4E+02 0.0047 24.1 6.5 25 136-160 119-143 (235)
331 2ijq_A Hypothetical protein; s 32.8 1.6E+02 0.0056 22.4 7.6 53 248-300 43-103 (161)
332 4aez_C MAD3, mitotic spindle c 32.0 90 0.0031 25.4 5.6 47 359-405 131-178 (223)
333 2etb_A Transient receptor pote 31.8 2.1E+02 0.0071 23.3 9.0 189 170-367 3-243 (256)
334 2nsz_A Programmed cell death p 31.7 1.5E+02 0.0051 21.5 8.9 22 277-298 12-33 (129)
335 2o03_A Probable zinc uptake re 30.9 1.2E+02 0.0041 22.0 5.9 44 172-215 16-59 (131)
336 1s1e_A KV channel interacting 30.7 1.5E+02 0.0052 23.8 7.2 41 184-226 174-214 (224)
337 3vu7_H DNA repair protein REV1 30.5 78 0.0027 22.9 4.5 47 44-90 39-88 (124)
338 2jul_A Calsenilin; EF-hand, ca 30.5 1.2E+02 0.0042 25.1 6.7 152 39-192 86-255 (256)
339 4ets_A Ferric uptake regulatio 30.2 1.1E+02 0.0037 23.3 5.7 17 354-370 44-60 (162)
340 2keb_A DNA polymerase subunit 30.1 1.3E+02 0.0046 20.5 6.5 32 360-391 27-58 (101)
341 3mwm_A ZUR, putative metal upt 29.9 1.1E+02 0.0036 22.6 5.5 46 171-216 18-63 (139)
342 3ltm_A Alpha-REP4; protein eng 29.7 2E+02 0.0069 22.5 19.3 49 165-217 94-142 (211)
343 1bpo_A Protein (clathrin); cla 28.9 3.5E+02 0.012 25.0 9.8 109 215-329 343-451 (494)
344 3eyy_A Putative iron uptake re 28.7 1.7E+02 0.0059 21.6 6.5 59 190-251 8-66 (145)
345 4b4t_S RPN3, 26S proteasome re 28.6 3.7E+02 0.013 25.2 14.3 62 203-265 233-298 (523)
346 1q2z_A ATP-dependent DNA helic 28.6 1E+02 0.0035 22.1 5.0 52 431-482 41-96 (120)
347 4a1g_A Mitotic checkpoint seri 28.5 1.9E+02 0.0065 21.8 9.7 47 436-482 84-134 (152)
348 2czy_A Paired amphipathic heli 28.2 1.2E+02 0.0042 19.6 5.6 30 433-462 4-33 (77)
349 2rfa_A Transient receptor pote 28.2 2.2E+02 0.0077 22.6 10.7 19 248-266 162-180 (232)
350 3utm_A Tankyrase-1; tankyrase, 28.2 2.8E+02 0.0097 23.7 11.1 117 243-377 27-152 (351)
351 2jul_A Calsenilin; EF-hand, ca 27.9 1.6E+02 0.0054 24.3 7.0 130 96-227 109-255 (256)
352 2o03_A Probable zinc uptake re 27.4 93 0.0032 22.6 4.7 49 135-183 14-62 (131)
353 4g8k_A 2-5A-dependent ribonucl 27.1 3E+02 0.01 23.6 14.1 57 135-200 26-86 (337)
354 3e3v_A Regulatory protein RECX 26.9 2.2E+02 0.0076 22.0 10.7 52 147-199 49-100 (177)
355 4b4t_S RPN3, 26S proteasome re 26.8 4E+02 0.014 25.0 14.5 26 237-262 231-256 (523)
356 2f6m_A Suppressor protein STP2 26.1 1.2E+02 0.0042 18.9 4.4 44 345-389 5-48 (65)
357 3ygs_P Procaspase 9; apoptosis 26.0 1.5E+02 0.005 20.2 5.2 37 356-396 51-87 (97)
358 2w57_A Ferric uptake regulatio 25.3 2.1E+02 0.0071 21.4 6.5 60 190-251 6-66 (150)
359 1wgl_A TOLL-interacting protei 25.2 64 0.0022 19.7 2.8 15 214-228 36-50 (59)
360 2dzn_A Probable 26S proteasome 25.1 2.5E+02 0.0087 22.1 8.2 13 142-154 10-22 (228)
361 2xai_A ASB-9, ankyrin repeat a 24.7 2.9E+02 0.0099 22.6 9.5 18 105-122 40-57 (261)
362 3mwm_A ZUR, putative metal upt 24.4 79 0.0027 23.4 3.9 50 134-183 16-65 (139)
363 1rw2_A ATP-dependent DNA helic 24.4 1.6E+02 0.0055 22.2 5.5 50 432-481 73-126 (152)
364 1bd8_A P19INK4D CDK4/6 inhibit 24.3 1.9E+02 0.0066 21.0 6.4 152 205-368 3-156 (156)
365 2yru_A Steroid receptor RNA ac 24.1 1E+02 0.0035 22.0 4.2 41 188-228 48-88 (118)
366 1fpw_A Yeast frequenin, calciu 23.9 2.4E+02 0.0083 21.5 7.3 25 201-225 163-187 (190)
367 2crb_A Nuclear receptor bindin 23.7 1.7E+02 0.006 19.7 5.3 27 379-405 17-43 (97)
368 2wvi_A Mitotic checkpoint seri 23.1 2.6E+02 0.0087 21.4 9.6 47 394-445 77-124 (164)
369 2pnn_A Transient receptor pote 23.1 2.5E+02 0.0084 23.2 7.4 55 137-191 16-79 (273)
370 2xig_A Ferric uptake regulatio 22.4 2.5E+02 0.0084 21.0 7.3 58 368-431 18-75 (150)
371 1mzb_A Ferric uptake regulatio 22.2 2.3E+02 0.0079 20.6 6.4 59 368-432 9-68 (136)
372 2keb_A DNA polymerase subunit 22.0 2E+02 0.0067 19.7 6.9 30 151-180 29-58 (101)
373 2fe3_A Peroxide operon regulat 21.9 2.4E+02 0.0084 20.8 7.6 58 333-391 13-70 (145)
374 2fu4_A Ferric uptake regulatio 20.8 1.8E+02 0.006 18.7 6.1 34 358-391 33-66 (83)
375 2lp4_A Chemotaxis protein CHEA 20.2 2.7E+02 0.0091 22.6 6.6 91 393-491 13-120 (225)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-38 Score=314.99 Aligned_cols=416 Identities=11% Similarity=0.005 Sum_probs=287.6
Q ss_pred CCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHH
Q 010994 59 KVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALL 138 (496)
Q Consensus 59 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li 138 (496)
.++...|+.++..+.+.|++++|+.+|+.+.... +++..+..++..+.+.|++++|..+|+.+....++..+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 3567788999999999999999999999988654 3455666678888899999999999998876667888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHH-HC--------------CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC-----
Q 010994 139 NCYVRQRQTDKALSHFRKMK-EM--------------GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF----- 198 (496)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~-~~--------------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----- 198 (496)
.+|.+.|++++|.++|+++. .. |.+++..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999988532 21 23445788999999999999999999999888765321
Q ss_pred -----------------------------------------------------------------CChhhHHHHHHHHhh
Q 010994 199 -----------------------------------------------------------------PDNFSYRICINSYGA 213 (496)
Q Consensus 199 -----------------------------------------------------------------p~~~~~~~li~~~~~ 213 (496)
++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 333444444444445
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 010994 214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR 293 (496)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 293 (496)
.|++++|.++|+++. +.+. .+..+++.++.+|.+.|++++|..+++++.... +.+..+|+.++..|.+.|++++|.+
T Consensus 318 ~g~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 318 RSRFIDVLAITTKIL-EIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TTCHHHHHHHHHHHH-HHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHH-HcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 555555555554444 2222 233444445555555555555555555544322 2445666677777777777777777
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994 294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK 373 (496)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (496)
+|+.+....+ .+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+...
T Consensus 395 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 395 YFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7776665543 455677777777777777777777777776653 33666777777777777777777777777776644
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994 374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD--PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR 451 (496)
Q Consensus 374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 451 (496)
. +..+|+.++..|.+.|++++|.++|+++.+.. .+.+..|+ ..++..++.+|.+.|++++|.++++++.+..|.+.
T Consensus 473 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 473 Y-DPLLLNELGVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred C-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 3 67777777777777777777777777777611 01144666 56777777777777888888887777776666777
Q ss_pred HHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhH
Q 010994 452 QMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEET 486 (496)
Q Consensus 452 ~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t 486 (496)
.+|..++.+|.+.| ++|.+.|+++.+ +.|+...
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~ 585 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIM 585 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChH
Confidence 77777777777777 677777777776 3465443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-36 Score=298.68 Aligned_cols=417 Identities=10% Similarity=0.003 Sum_probs=355.9
Q ss_pred CcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhH
Q 010994 28 NKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDL 107 (496)
Q Consensus 28 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (496)
.++.++..+.+.++... ...+++.+. +..|+..++..++..|.+.|++++|+.+|+.+.... .++..+..++..
T Consensus 86 ~~~~~~~~~~~~g~~~~-A~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~ 159 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKC-AAFVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---RSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHTTCHHH-HHHHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCchH-HHHHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc---cchhHHHHHHHH
Confidence 34455555666555333 233455554 345677889999999999999999999999886533 567788888999
Q ss_pred HHhhcCHHHHHHHHHhchhcC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------
Q 010994 108 IGRVHGFLSAESYFSNLKDDE-----------------KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGI-------- 162 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------- 162 (496)
+.+.|++++|..+|+++.... ++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 999999999999998543322 2578899999999999999999999998865432
Q ss_pred --------------------------------------------------------------CCChhHHHHHHHHHHhcC
Q 010994 163 --------------------------------------------------------------ALSTLTYNDIMCLYSKTG 180 (496)
Q Consensus 163 --------------------------------------------------------------~p~~~~~~~l~~~~~~~~ 180 (496)
+++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 267888999999999999
Q ss_pred CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010994 181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVL 260 (496)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 260 (496)
++++|..+|+++.+.+. .+..++..++.++.+.|++++|..+++++. .... .+..+++.++.+|.+.|++++|.++|
T Consensus 320 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLV-DRHP-EKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998653 377889999999999999999999999997 4443 67889999999999999999999999
Q ss_pred HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010994 261 KKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY 340 (496)
Q Consensus 261 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (496)
+++.+..+ .+..+|+.++.+|.+.|++++|+++|+.+....+ .+..++..++.+|.+.|++++|.++|+++.+.. +.
T Consensus 397 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 397 SKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99987543 5678999999999999999999999999887765 678899999999999999999999999999875 34
Q ss_pred CcccHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC
Q 010994 341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEK----GKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK 414 (496)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 414 (496)
+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+ ..+
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p 547 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL------LST 547 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSS
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCC
Confidence 7889999999999999999999999999876 66777 78999999999999999999999999997 224
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010994 415 PDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANI 462 (496)
Q Consensus 415 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 462 (496)
.+..++..+..+|.+.|++++|.+.|+++.+..|.+...|..+..+|.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 478999999999999999999999999999988999999998887764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.8e-30 Score=238.47 Aligned_cols=381 Identities=12% Similarity=-0.003 Sum_probs=327.8
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC
Q 010994 68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ 146 (496)
Q Consensus 68 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 146 (496)
+...+.+.|++++|++.++.+.+.. |.++.....+...+.+.|++++|..+++.+....| +..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999998875 24455566667788899999999999999888877 68899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHH
Q 010994 147 TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILR 225 (496)
Q Consensus 147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~ 225 (496)
+++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+.. |+ ...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999998763 2356789999999999999999999999998863 44 4567778888999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 010994 226 EMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY 305 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 305 (496)
++. ...+ .+..+|..+...+...|++++|...|+++....+ .+...|..+...+...|++++|...++......+ .
T Consensus 160 ~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~ 235 (388)
T 1w3b_A 160 KAI-ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHH-HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-C
Confidence 987 4443 5678899999999999999999999999988654 5567889999999999999999999998887765 5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994 306 INRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA 385 (496)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 385 (496)
+..++..+..++.+.|++++|...++++.+..+ .+..++..+...+.+.|++++|...|+++.+..+ .+..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHH
Confidence 668888999999999999999999999998742 2567889999999999999999999999998754 37889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 386 GYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
.+...|++++|...++++++ ..+.+..++..+..++.+.|++++|...++++.+..|.+...|..+...+...|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALE------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTT------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999986 334457889999999999999999999999998888888899999988887654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-28 Score=230.48 Aligned_cols=365 Identities=13% Similarity=0.079 Sum_probs=321.8
Q ss_pred hhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 105 LDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
...+.+.|++++|...+..+....| +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 4566789999999999999988888 47778888899999999999999999988763 458889999999999999999
Q ss_pred cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
+|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++. ..++ .+...+..+...+...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999998853 2245679999999999999999999999988 4443 45667778889999999999999999999
Q ss_pred HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 010994 264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR 343 (496)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 343 (496)
....+ .+..+|..+...+...|++++|...|+.+....+ .+...+..+...+...|++++|...+++..+..+ .+..
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 238 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHH
Confidence 88643 5578899999999999999999999999988765 5667899999999999999999999999988742 3567
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI 423 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 423 (496)
++..+...|.+.|++++|...|+++.+.++. +..+|..+...+.+.|++++|.+.|+++++ ..+.+..++..+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l 311 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR------LCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCcccHHHHHHH
Confidence 8899999999999999999999999987654 678999999999999999999999999998 345678899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChh
Q 010994 424 LSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEE 485 (496)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~ 485 (496)
...+...|++++|...++++.+..|.+..+|..++.+|.+.| ++|...++++.+ +.|+..
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~ 373 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFA 373 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCH
Confidence 999999999999999999999888889999999999999999 899999999987 557654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=2.3e-31 Score=252.91 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=159.9
Q ss_pred HHHHHHhchhcC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC---------Cc
Q 010994 117 AESYFSNLKDDE--KT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY---------EK 184 (496)
Q Consensus 117 A~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~---------~~ 184 (496)
+..+.+.+.+.. +. ..+++.+|++|++.|++++|+++|++|.+.|++||..+||+||.+|++.+.. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344444444432 22 3467888899999999999999999999999999999999999998877654 45
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 185 VPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAE 264 (496)
Q Consensus 185 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 264 (496)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|. ..|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888887 77888888888888888888888888888888888
Q ss_pred HhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 010994 265 ERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL 320 (496)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (496)
+.|+.||..||+.+|.+|++.|++++|.+++++|...+..|+..||+.++..++..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888877653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=7.6e-31 Score=249.40 Aligned_cols=213 Identities=11% Similarity=0.062 Sum_probs=108.9
Q ss_pred HHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994 150 ALSHFRKMKEMGIALSTL-TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME 228 (496)
Q Consensus 150 A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 228 (496)
+..+.+++.++++.+.+. .++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 344445555555544432 45666677777777777777777777667777777777777666655432100
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 010994 229 SQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR 308 (496)
Q Consensus 229 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 308 (496)
.+.+++++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|...+..|+..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 0011234455555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF 388 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 388 (496)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred h
Q 010994 389 D 389 (496)
Q Consensus 389 ~ 389 (496)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 3
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-24 Score=210.49 Aligned_cols=415 Identities=9% Similarity=-0.011 Sum_probs=315.2
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHH
Q 010994 62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNC 140 (496)
Q Consensus 62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 140 (496)
...+..+...+.+.|++++|+..|+.+.+.. +++..+..+...+.+.|++++|...|+++.+..| +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 4567788889999999999999999999977 3677777788999999999999999999998888 58899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC-----------------------------------CcH
Q 010994 141 YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY-----------------------------------EKV 185 (496)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~-----------------------------------~~a 185 (496)
+.+.|++++|...|+.+...+. ++......++..+...... ...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999988753 3444444444333321111 111
Q ss_pred HHHHHHHHHCCCC--------C-ChhhHHHHHHHHhh---cCChHHHHHHHHHhhcC----C--CC------CCCHHHHH
Q 010994 186 PDVLTEMKAKNIF--------P-DNFSYRICINSYGA---RSDLEGMEIILREMESQ----P--HI------VLDWSTYA 241 (496)
Q Consensus 186 ~~~~~~m~~~~~~--------p-~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~----~--~~------~~~~~~~~ 241 (496)
..+...+...... | +...+......+.. .|++++|..+|+++... . .. +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111111 1 13334444444443 88999999999888730 2 11 13356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 010994 242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG 321 (496)
Q Consensus 242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 321 (496)
.+...+...|++++|...|+++....+. ..++..+..++...|++++|...++......+ .+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 7888899999999999999998876643 77888889999999999999999998877655 56678888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 010994 322 EHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMK 401 (496)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 401 (496)
++++|...++.+.+... .+...+..+...|...|++++|...++++.+.... +...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999988643 35677888888899999999999999998876544 66788889999999999999999999
Q ss_pred HHHHhhhcCCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994 402 AALSVYVEGKGWKPDPKVITSILSKLGD---EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK 476 (496)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 476 (496)
++....-......-....+..+...+.. .|++++|...++.+....|.+..+|..+..+|.+.| ++|...|++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9887221000000113478888888888 899999999999888878888899999999999999 78999999988
Q ss_pred hCCCCCChhHH
Q 010994 477 ADGIDEDEETK 487 (496)
Q Consensus 477 ~~g~~p~~~t~ 487 (496)
+ +.|+....
T Consensus 477 ~--~~~~~~~~ 485 (514)
T 2gw1_A 477 D--LARTMEEK 485 (514)
T ss_dssp H--HCSSHHHH
T ss_pred H--hccccHHH
Confidence 7 44665443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-25 Score=214.11 Aligned_cols=405 Identities=9% Similarity=-0.077 Sum_probs=314.0
Q ss_pred hccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHH
Q 010994 36 ISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFL 115 (496)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (496)
+...|+...+ ...++...... |+...|..+...+.+.|++++|++.++.+.+.+ |.++..+..+...+.+.|+++
T Consensus 16 ~~~~g~~~~A-~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 16 FFRNKKYDDA-IKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHTSCHHHH-HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccHHHH-HHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHH
Confidence 3344443333 33555555544 689999999999999999999999999999876 355667777889999999999
Q ss_pred HHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------------------
Q 010994 116 SAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEM---------------------------------- 160 (496)
Q Consensus 116 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------- 160 (496)
+|...|+++....| +......++..+.+......+.+.+..+...
T Consensus 91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 99999999988766 4444445555544433333333333211111
Q ss_pred -CC---------CCChhHHHHHHHHHHh---cCCCCcHHHHHHHHHH-----CCCCC--------ChhhHHHHHHHHhhc
Q 010994 161 -GI---------ALSTLTYNDIMCLYSK---TGQYEKVPDVLTEMKA-----KNIFP--------DNFSYRICINSYGAR 214 (496)
Q Consensus 161 -g~---------~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~li~~~~~~ 214 (496)
.. +.+...+......+.. .|++++|...|+++.+ ....| +..++..+..++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 00 1114445555555554 8999999999999988 32122 345678888999999
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994 215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL 294 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 294 (496)
|++++|...++++. ..+. +...+..+..+|...|++++|...++++....+ .+..++..+...+...|++++|...
T Consensus 251 ~~~~~A~~~~~~~l-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 251 NDPLGAHEDIKKAI-ELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SCHHHHHHHHHHHH-HHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHH-hhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999987 4443 388888999999999999999999999987654 5677899999999999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994 295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374 (496)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (496)
++......+ .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+....
T Consensus 327 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 998888766 567788999999999999999999999998874 336778889999999999999999999998875432
Q ss_pred -CC----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 375 -TT----PNSWAVVAAGYFD---AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 375 -p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
++ ...+..+...+.. .|++++|...+++++. ..+.+...+..+...+.+.|++++|...+++..+.
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK------LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 11 3389999999999 9999999999999997 23345778889999999999999999999999887
Q ss_pred CCCCHHHHHHH
Q 010994 447 IPMNRQMYHAF 457 (496)
Q Consensus 447 ~~~~~~~~~~l 457 (496)
.|.+...+..+
T Consensus 479 ~~~~~~~~~~~ 489 (514)
T 2gw1_A 479 ARTMEEKLQAI 489 (514)
T ss_dssp CSSHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 77777776655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=9.5e-24 Score=201.62 Aligned_cols=327 Identities=11% Similarity=0.004 Sum_probs=249.0
Q ss_pred HHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC
Q 010994 120 YFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF 198 (496)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 198 (496)
.+..+....| +...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.+ +
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 91 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-M 91 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 3333333345 57778888888888888888888888887653 3367788888888888888888888888888764 2
Q ss_pred CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH---HHHHHH------------HHHHHhcCChHHHHHHHHHH
Q 010994 199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDW---STYASA------------AHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 199 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m 263 (496)
.+..++..+..++.+.|++++|.+.|+++. ..+. .+. ..+..+ ...+...|++++|...|+++
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVL-KSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356777888888888888888888888887 4432 233 444444 44488889999999999988
Q ss_pred HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 010994 264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR 343 (496)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 343 (496)
.+..+ .+..++..+..+|...|++++|...|+.+....+ .+..++..++.++...|++++|...++.+.+... .+..
T Consensus 170 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 246 (450)
T 2y4t_A 170 LEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKR 246 (450)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHH
Confidence 77543 5677888888899999999999999988877655 5677888888899999999999999998887632 2333
Q ss_pred cHHHH------------HHHHHhcCchhHHHHHHHHHHhcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 010994 344 IPNAV------------IIGYCNNGLVQNAEAILEDLVEKGKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVY 407 (496)
Q Consensus 344 ~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 407 (496)
.+..+ ...+.+.|++++|...|+++.+..+. + ...|..+...+.+.|++++|+..+++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-- 323 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ-- 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 34333 77888999999999999999886433 2 34788888999999999999999999987
Q ss_pred hcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994 408 VEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA 460 (496)
Q Consensus 408 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 460 (496)
-.+.+...+..+..+|...|++++|...++++.+..|.+...+..+..+
T Consensus 324 ----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 324 ----MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp ----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred ----hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 2234678899999999999999999999999888778888888888743
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.4e-23 Score=198.83 Aligned_cols=367 Identities=12% Similarity=0.030 Sum_probs=234.6
Q ss_pred CCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHH
Q 010994 59 KVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGAL 137 (496)
Q Consensus 59 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 137 (496)
+.+...+..+...+.+.|++++|+++|+.+.+.. +.++..+..+...+...|++++|...|+++....| +..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3455566677777777777777777777776643 12344444445555555555555555555555544 35555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 010994 138 LNCYVRQRQTDKALSHFRKMKEMGIALST---LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGAR 214 (496)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 214 (496)
..+|.+.|++++|...|+++.+.+.. +. ..+..++..+.. ..+..+...+...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 55555555555555555555544211 22 334433332110 0122234446677
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994 215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL 294 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 294 (496)
|++++|...|+++. .... .+..++..+..+|...|++++|...|+++.+..+ .+..+|..+..+|...|++++|+..
T Consensus 157 ~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 157 GDYTAAIAFLDKIL-EVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp TCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888888887776 3332 4667777777888888888888888887766543 5567777788888888888888888
Q ss_pred HHHHHhhcCCCCchhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCc
Q 010994 295 WDLEKTACKRYINRDYITM------------LEALMKLGEHEEAEKVLKEWELSGNSYD-----TRIPNAVIIGYCNNGL 357 (496)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~ 357 (496)
|+.+....+ .+...+..+ ...+.+.|++++|...++.+.+.. |+ ...+..+...+.+.|+
T Consensus 234 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 234 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCC
Confidence 877766543 333334333 778888999999999999988763 33 3467788888999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHH----------
Q 010994 358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSK---------- 426 (496)
Q Consensus 358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~---------- 426 (496)
+++|...++++.+..+. +...|..+..+|...|++++|...++++++ ..|+ ...+..+..+
T Consensus 311 ~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE-------HNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHhhcccch
Confidence 99999999998876533 678899999999999999999999999986 5554 4455555422
Q ss_pred --HhccC-----CHHHHHHHHHHH-HhcCC---CCH-------HHHHHHHHHHHhCC
Q 010994 427 --LGDEG-----SVQDVEAFVAAL-RTVIP---MNR-------QMYHAFIKANIRNG 465 (496)
Q Consensus 427 --~~~~g-----~~~~a~~~~~~~-~~~~~---~~~-------~~~~~l~~~~~~~g 465 (496)
|...| +.+++.+.+++. ....| ++. ..+..+..+|...+
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~ 439 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 33333 555667777653 22211 221 25666666666666
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3e-23 Score=202.92 Aligned_cols=404 Identities=11% Similarity=0.027 Sum_probs=306.9
Q ss_pred ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHH
Q 010994 61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLN 139 (496)
Q Consensus 61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~ 139 (496)
....+..+...+.+.|++++|++.|+.+.+.. |.++..+..+...+.+.|++++|+..|+++....| +..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34567888999999999999999999999876 35677777888899999999999999999998887 5888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC------CCCCChhh----------
Q 010994 140 CYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK------NIFPDNFS---------- 203 (496)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~---------- 203 (496)
++...|++++|...|+.+ .. .|+. ....+..+...+....|...++++... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999743 32 1221 112233333444445677777766442 11122211
Q ss_pred --------------------HHHHHHHHhh--------cCChHHHHHHHHHhhcCCCCCCC-------HHHHHHHHHHHH
Q 010994 204 --------------------YRICINSYGA--------RSDLEGMEIILREMESQPHIVLD-------WSTYASAAHFYI 248 (496)
Q Consensus 204 --------------------~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~li~~~~ 248 (496)
...+...+.. .|++++|..+++++. ...+ .+ ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l-~~~p-~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL-SANT-VDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH-C--C-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHCC-CcchhhHHHHHHHHHHHHHHH
Confidence 1222222221 247889999999988 5443 23 234666778888
Q ss_pred hcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 010994 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEK 328 (496)
Q Consensus 249 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (496)
..|++++|...|++..... |+..+|..+...+...|++++|...++......+ .+...+..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998765 4477888899999999999999999998887765 567788999999999999999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 010994 329 VLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYV 408 (496)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (496)
.++++.+... .+...+..+...|...|++++|...++++.+..+. +...+..+...+...|++++|...|+++++..-
T Consensus 332 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999988743 35678888999999999999999999999987644 677899999999999999999999999987332
Q ss_pred cCCCCCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994 409 EGKGWKPDPKVITSILSKLGDE----------GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK 476 (496)
Q Consensus 409 ~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 476 (496)
...........+......+... |++++|...++...+..|.+...|..+..+|.+.| ++|.+.|++..
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1222222333345555677777 99999999999998888888999999999999999 79999999988
Q ss_pred hC
Q 010994 477 AD 478 (496)
Q Consensus 477 ~~ 478 (496)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3.5e-20 Score=171.05 Aligned_cols=318 Identities=12% Similarity=0.009 Sum_probs=188.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYG 212 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 212 (496)
.+..+...+...|++++|...|+++.+... .+..+|..+..++...|++++|...|+++.+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 334444444444444444444444444321 134444444444444444444444444444431 113334444444444
Q ss_pred hcCChHHHHHHHHHhhcCCCCC--CCHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994 213 ARSDLEGMEIILREMESQPHIV--LDWSTYAS------------AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL 278 (496)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 278 (496)
..|++++|...++++. ..... .+...+.. +...+...|++++|...++++.+..+ .+...+..+
T Consensus 83 ~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 160 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVL-KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELR 160 (359)
T ss_dssp HHTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HcCChHHHHHHHHHHH-hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 4555555555554444 22110 01122222 24566677777777777777766443 455666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH------------
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN------------ 346 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------ 346 (496)
...+...|++++|...++......+ .+...+..+...+...|++++|...++...+.... +...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHH
Confidence 7777777777777777776666544 45566667777777777777777777777665321 222221
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTP----NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
.+...+.+.|++++|...++++.+..+. +. ..+..+...+...|++++|+..++++++ ..+.+...+..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~ 311 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ------MEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCcccHHHHHH
Confidence 2255677788888888888888776533 33 2344567788888888888888888877 22336677888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIR 463 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (496)
+...+...|++++|...++...+..|.+...+..+..+...
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 88888888888888888888887777777777777665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=4.6e-20 Score=170.30 Aligned_cols=317 Identities=8% Similarity=-0.044 Sum_probs=217.3
Q ss_pred ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHH
Q 010994 61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLN 139 (496)
Q Consensus 61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~ 139 (496)
++..+..+...+.+.|++++|++.|+.+.+.. |.++..+......+...|++++|...|+++....| +...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34567788888999999999999999998865 24566777778888899999999999999888777 5788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CChhHHHHH------------HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH
Q 010994 140 CYVRQRQTDKALSHFRKMKEMGIA--LSTLTYNDI------------MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR 205 (496)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 205 (496)
.+...|++++|...|++..+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999988876320 144444444 466777788888888888777653 23566677
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHH---------
Q 010994 206 ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYN--------- 276 (496)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--------- 276 (496)
.+..++...|++++|...++++. ...+ .+..++..+...|...|++++|...|++..+..+ .+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAAS-KLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-TTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHH
Confidence 77777778888888888887776 4443 5667777777777888888888888877766433 2222222
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 277 ---FLISLYASLGNKSEVLRLWDLEKTACKRYIN----RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 277 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
.+...+...|++++|...++......+. +. ..+..+..++...|++++|...++...+.. +.+..++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 2244566667777777777666655432 22 123345566666677777777776666652 22455666666
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG 386 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 386 (496)
..|...|++++|...|+++.+..+. +...+..+..+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 349 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKA 349 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 6666677777777777766665432 34444444443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=6e-20 Score=179.44 Aligned_cols=406 Identities=11% Similarity=-0.010 Sum_probs=296.6
Q ss_pred CcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhH
Q 010994 28 NKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDL 107 (496)
Q Consensus 28 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (496)
.+..+-..+...|+...++. .++..... .+.+...+..+...+.+.|++++|++.|+.+.+.+ |.++..+..+..+
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~-~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIK-YYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHH-HHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHH-HHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 34445556666666555544 55555443 35578899999999999999999999999999876 3456677778889
Q ss_pred HHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChh--------------
Q 010994 108 IGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMG------IALSTL-------------- 167 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~-------------- 167 (496)
+...|++++|...|+ .....|+. .+..+..+...+...+|...++.+.... ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999997 44334432 2223445555666678888888775431 111111
Q ss_pred ----------------HHHHHHHHHHhc--------CCCCcHHHHHHHHHHCCCCCC--------hhhHHHHHHHHhhcC
Q 010994 168 ----------------TYNDIMCLYSKT--------GQYEKVPDVLTEMKAKNIFPD--------NFSYRICINSYGARS 215 (496)
Q Consensus 168 ----------------~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~--------~~~~~~li~~~~~~~ 215 (496)
....+...+... |++++|..+|+++.+.. |+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 223333332222 47889999999998753 33 234667778888899
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994 216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW 295 (496)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 295 (496)
++++|...+++.. ... |+...+..+...|...|++++|...|+++.+..+ .+..+|..+...+...|++++|...+
T Consensus 258 ~~~~A~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQESI-NLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHHH-HHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHH-hcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999987 443 4578888899999999999999999999887654 56778899999999999999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-
Q 010994 296 DLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA- 374 (496)
Q Consensus 296 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 374 (496)
+......+ .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+....
T Consensus 334 ~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 98887765 556788889999999999999999999998874 335668888999999999999999999998764321
Q ss_pred ----CCHhHHHHHHHHHHhc----------CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994 375 ----TTPNSWAVVAAGYFDA----------GKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV 440 (496)
Q Consensus 375 ----p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (496)
.....+......+... |++++|...|+++++ ..+.+...+..+...+...|++++|.+.|
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE------LDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1222345556777777 999999999999987 23345678888999999999999999999
Q ss_pred HHHHhcCCCCHHHH
Q 010994 441 AALRTVIPMNRQMY 454 (496)
Q Consensus 441 ~~~~~~~~~~~~~~ 454 (496)
+...+..|.+....
T Consensus 486 ~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 486 EDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHC--CHHHH
T ss_pred HHHHHhCCCcHHHH
Confidence 98888666555443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=6.2e-20 Score=167.35 Aligned_cols=289 Identities=9% Similarity=-0.025 Sum_probs=178.0
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010994 165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAA 244 (496)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 244 (496)
+...+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|..+++++. .... .+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLV-DLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHH-HhCc-CCHHHHHHHH
Confidence 34444444444455555555555555544432 1123334444445555555555555555554 2221 2344455555
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCH
Q 010994 245 HFYIKAN-LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH 323 (496)
Q Consensus 245 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (496)
..+...| ++++|...|++.....+ .+...|..+...+...|++++|...++......+ .+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 5555555 55555555555544332 3344555556666666666666666665555443 3344555566666666666
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC--------CCCCHhHHHHHHHHHHhcCChHH
Q 010994 324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG--------KATTPNSWAVVAAGYFDAGKTER 395 (496)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~ 395 (496)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. ...+..++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 66666666666553 2245566667777777777777777777766532 12345688888899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhCC
Q 010994 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKAN-IRNG 465 (496)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g 465 (496)
|...++++++ -.+.+...+..+...+...|++++|...+++..+..|.+...+..+..++ ...|
T Consensus 255 A~~~~~~a~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 255 ALDYHRQALV------LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHHHH------HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHh------hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence 9999999887 22335678888888899999999999999988887788888888888888 4445
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.2e-19 Score=163.68 Aligned_cols=291 Identities=9% Similarity=-0.062 Sum_probs=213.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 209 (496)
+...+..+...+...|++++|.++|+++.+... .+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 455666677777777788888887777766532 255566667777777777888887777777652 224566777777
Q ss_pred HHhhcC-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 010994 210 SYGARS-DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK 288 (496)
Q Consensus 210 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (496)
.+...| ++++|...|++.. .... .+...+..+...+...|++++|...|++..+..+ .+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKAT-TLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHH-TTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 777888 7888888888777 4443 4566677788888888888888888888776543 4456677788888888888
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CCCcccHHHHHHHHHhcCchhH
Q 010994 289 SEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN--------SYDTRIPNAVIIGYCNNGLVQN 360 (496)
Q Consensus 289 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~ 360 (496)
++|...++......+ .+...+..+...+...|++++|...++++.+... +....++..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 888888887776655 5567777888888888888888888888775421 2335677888888889999999
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHH-hccCCHH
Q 010994 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKL-GDEGSVQ 434 (496)
Q Consensus 361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~ 434 (496)
|...+++..+.... +...+..+...+...|++++|.+.++++++ +.| +...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG-------LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT-------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc-------cCCCchHHHHHHHHHHHHHhCchh
Confidence 99999988877544 677888888999999999999999998875 445 556677777666 4555543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=8.3e-18 Score=163.61 Aligned_cols=407 Identities=8% Similarity=0.036 Sum_probs=297.9
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHH
Q 010994 58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGAL 137 (496)
Q Consensus 58 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 137 (496)
.+-+...|..++. +.+.|++++|..+|+.+.+.. |.++..+...+..+.+.|+++.|..+|+++....|+...|..+
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4557888999998 478999999999999999975 4566677778888889999999999999999988998888888
Q ss_pred HHHH-HhcCCHHHHHH----HHHHHHH-CCCCC-ChhHHHHHHHHHHh---------cCCCCcHHHHHHHHHHCCCCCCh
Q 010994 138 LNCY-VRQRQTDKALS----HFRKMKE-MGIAL-STLTYNDIMCLYSK---------TGQYEKVPDVLTEMKAKNIFPDN 201 (496)
Q Consensus 138 i~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~ 201 (496)
+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7643 45677777665 7776654 35443 56778887776654 68899999999999883111112
Q ss_pred hhHHHHHHHH-------------hhcCChHHHHHHHHHhh-----cCC---CCCCC--------HHHHHHHHHHHHhc--
Q 010994 202 FSYRICINSY-------------GARSDLEGMEIILREME-----SQP---HIVLD--------WSTYASAAHFYIKA-- 250 (496)
Q Consensus 202 ~~~~~li~~~-------------~~~~~~~~a~~~~~~~~-----~~~---~~~~~--------~~~~~~li~~~~~~-- 250 (496)
..|....... .+.++++.|..+++.+. -+. .++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3333222211 13456777777766521 021 12343 23454444333222
Q ss_pred --CCh----HHHHHHHHHHHHhcccCccchHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhhcCCCCchhH
Q 010994 251 --NLI----DKASDVLKKAEERLEQKDGIGYNFLISLYAS-------LGNKS-------EVLRLWDLEKTACKRYINRDY 310 (496)
Q Consensus 251 --~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~ 310 (496)
++. ..+..+|++.....+ .+...|...+..+.+ .|+++ +|..+|+.........+...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 477889999887543 567888888888875 79987 899999988763332456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH-H
Q 010994 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDT--RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG-Y 387 (496)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~ 387 (496)
..++..+.+.|++++|..+|+.+.+. .|+. ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHH
Confidence 89999999999999999999999986 4442 47888888889999999999999999986432 33334333322 3
Q ss_pred HhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHh
Q 010994 388 FDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR----QMYHAFIKANIR 463 (496)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 463 (496)
...|+.++|..+|+++++ ..+-+...+..++..+.+.|+.++|..+|++.....+.++ ..|...+.....
T Consensus 402 ~~~~~~~~A~~~~e~al~------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLK------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHTCCHHHHHHHHHHHHH------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHcCChhHHHHHHHHHHH------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 2233578899999999999999999999998887544343 488888888888
Q ss_pred CC--CcHHHHHHHHHh
Q 010994 464 NG--KGVDELLDSMKA 477 (496)
Q Consensus 464 ~g--~~a~~~~~~m~~ 477 (496)
.| +.+..+++++.+
T Consensus 476 ~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 476 IGDLASILKVEKRRFT 491 (530)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 89 678888888776
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.4e-17 Score=158.67 Aligned_cols=381 Identities=12% Similarity=0.010 Sum_probs=308.5
Q ss_pred CCChhhHHHHHHHHHh----ccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHh----hcCHHHHHHHHHhchhcCCC
Q 010994 59 KVRVGELQRIIRDLRK----RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGR----VHGFLSAESYFSNLKDDEKT 130 (496)
Q Consensus 59 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~ 130 (496)
.-++..+..+...|.. .+++++|+..|+...+.+ ++.....+...+.. .+++++|..+|++..+.+ +
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-L 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-C
Confidence 4466778888888888 899999999999999876 46677777777777 899999999999988753 6
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChh
Q 010994 131 YQTYGALLNCYVR----QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNF 202 (496)
Q Consensus 131 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~ 202 (496)
...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7778888889988 889999999999998875 67888888888887 789999999999998874 677
Q ss_pred hHHHHHHHHhh----cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcccCccch
Q 010994 203 SYRICINSYGA----RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK----ANLIDKASDVLKKAEERLEQKDGIG 274 (496)
Q Consensus 203 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 274 (496)
.+..+...|.. .++.++|.+.|++.. +.+ +...+..+...|.. .++.++|...|++..+.+ +...
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 88888888887 899999999999987 443 45677778888886 889999999999987754 3556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCcccH
Q 010994 275 YNFLISLYAS----LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL-----GEHEEAEKVLKEWELSGNSYDTRIP 345 (496)
Q Consensus 275 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 345 (496)
+..+...|.. .++.++|+..|+..... .+...+..+...|... ++.++|...+++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 7777788877 89999999999987665 3456777788888877 89999999999999875 44567
Q ss_pred HHHHHHHHhcC---chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994 346 NAVIIGYCNNG---LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD----AGKTERGFQCMKAALSVYVEGKGWKPDPK 418 (496)
Q Consensus 346 ~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 418 (496)
..+...|...| +.++|.++|++..+.| +...+..+...|.. .+++++|.++|+++.+ .+ +..
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-----~~---~~~ 400 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE-----QG---LSA 400 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TT---CHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-----CC---CHH
Confidence 77888887766 8899999999999874 78889999999998 8999999999999998 33 577
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCcHHHHHHH
Q 010994 419 VITSILSKLGD----EGSVQDVEAFVAALRTVIP---MNRQMYHAFIKANIRNGKGVDELLDS 474 (496)
Q Consensus 419 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~a~~~~~~ 474 (496)
.+..+...|.. .++.++|...|++..+..+ .++.....+...+....+.+.+...+
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~ 463 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQ 463 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHH
Confidence 78888888887 8999999999998877542 24555555544443322333433333
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.2e-19 Score=168.15 Aligned_cols=285 Identities=9% Similarity=-0.016 Sum_probs=195.1
Q ss_pred cCCCCcHHH-HHHHHHHCCC-CC--ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChH
Q 010994 179 TGQYEKVPD-VLTEMKAKNI-FP--DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254 (496)
Q Consensus 179 ~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 254 (496)
.|++++|.+ .|++...... .| +...+..+...+...|++++|...|+++. +..+ .+..++..+..+|...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH-HSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 356666666 5554443211 11 23456666677777777777777777776 4333 45666677777777777777
Q ss_pred HHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHH--------------HHHHHHhc
Q 010994 255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT--------------MLEALMKL 320 (496)
Q Consensus 255 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~ 320 (496)
+|...|+++.+..+ .+..++..+..++...|++++|...++.+....+......... .+..+...
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777766543 4556677777777777777777777776666554221111111 23333478
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994 321 GEHEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC 399 (496)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 399 (496)
|++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+..+. +..+|..+...+...|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999999999888764321 4667888888899999999999999998876543 677888899999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhCC--C
Q 010994 400 MKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN-----------RQMYHAFIKANIRNG--K 466 (496)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g--~ 466 (496)
|+++++ -.+.+...+..+..++.+.|++++|...++++....|.+ ..+|..+..+|...| +
T Consensus 274 ~~~al~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 274 YRRALE------LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHH------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHH------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 999887 223456788888889999999999999998777654444 788999999999988 6
Q ss_pred cHHHHHH
Q 010994 467 GVDELLD 473 (496)
Q Consensus 467 ~a~~~~~ 473 (496)
+|..+++
T Consensus 348 ~A~~~~~ 354 (368)
T 1fch_A 348 AYGAADA 354 (368)
T ss_dssp GHHHHHT
T ss_pred hHHHhHH
Confidence 6766654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.1e-19 Score=168.52 Aligned_cols=287 Identities=10% Similarity=-0.054 Sum_probs=144.5
Q ss_pred hhcCHHHHHH-HHHhchhcCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 110 RVHGFLSAES-YFSNLKDDEK-----TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 110 ~~~~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
..|+++.|.. .|++.....| +...+..+...+.+.|++++|...|+++.+... .+..+|..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 3466666666 6665544433 234566667777777777777777777766532 35666777777777777777
Q ss_pred cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHH---------------HHHHHH
Q 010994 184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYAS---------------AAHFYI 248 (496)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------li~~~~ 248 (496)
+|...|+++.+.. +.+..++..+..++...|++++|...++++. .... .+...+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL-RYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTST-TTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 7777777766653 2255666666677777777777777776665 3222 11111111 112222
Q ss_pred hcCChHHHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 010994 249 KANLIDKASDVLKKAEERLEQK-DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAE 327 (496)
Q Consensus 249 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (496)
..|++++|...|+++....+.. +..++..+...+...|++++|...++.+....+ .+...+..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555555554433211 234455555555555555555555554444432 23344444555555555555555
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC----------CHhHHHHHHHHHHhcCChHHHH
Q 010994 328 KVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT----------TPNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~a~ 397 (496)
..++++.+.. +.+...+..+...|.+.|++++|...|+++.+..+.. ...+|..+..+|...|+.++|.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 5555544432 1233344444445555555555555554444322110 1344444455555555555444
Q ss_pred HHHHH
Q 010994 398 QCMKA 402 (496)
Q Consensus 398 ~~~~~ 402 (496)
.++.+
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 44443
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=1.6e-16 Score=152.87 Aligned_cols=365 Identities=10% Similarity=0.034 Sum_probs=301.3
Q ss_pred HHHHHHHHHHhCCCCCCCcchhhhhhhHHHh----hcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010994 80 QALEVSDWMNRKGICVFAPCDHAVQLDLIGR----VHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR----QRQTDKAL 151 (496)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 151 (496)
.+++.+....+.+ ++.....+...+.. .++++.|..+|++..+. .+...+..|...|.. .+++++|.
T Consensus 25 ~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 25 VNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455666665655 35556666666666 78999999999998875 467888889999998 99999999
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh----cCChHHHHHH
Q 010994 152 SHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA----RSDLEGMEII 223 (496)
Q Consensus 152 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~ 223 (496)
..|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998875 77888889999988 789999999999998875 56777888888877 7899999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHh----cCCHHHHHHHH
Q 010994 224 LREMESQPHIVLDWSTYASAAHFYIK----ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYAS----LGNKSEVLRLW 295 (496)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 295 (496)
|++.. +.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|
T Consensus 174 ~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 YSKAA-EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHH-HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99987 443 56788888899988 899999999999987754 45677788888876 88999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-----CchhHHHHHHH
Q 010994 296 DLEKTACKRYINRDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN-----GLVQNAEAILE 366 (496)
Q Consensus 296 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~ 366 (496)
+..... .+...+..+...|.. .++.++|...|+...+.| +...+..+...|... ++.++|..+|+
T Consensus 247 ~~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 987765 345667778888877 899999999999998765 455677788888877 89999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHH
Q 010994 367 DLVEKGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD----EGSVQDVEAF 439 (496)
Q Consensus 367 ~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 439 (496)
+..+.+ +...+..+...|...| +.++|+++|+++.+ . .+...+..+...|.. .+++++|...
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-----~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-----K---GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-----T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-----C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999875 6678888888888866 78999999999998 3 467788888888888 8999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh----CC--CcHHHHHHHHHhCCCC
Q 010994 440 VAALRTVIPMNRQMYHAFIKANIR----NG--KGVDELLDSMKADGID 481 (496)
Q Consensus 440 ~~~~~~~~~~~~~~~~~l~~~~~~----~g--~~a~~~~~~m~~~g~~ 481 (496)
|++..+. .++..+..|...|.. .+ ++|...|++..+.|..
T Consensus 390 ~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 390 MRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9988763 467888999999987 45 7999999999987643
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=3.4e-19 Score=165.03 Aligned_cols=255 Identities=9% Similarity=-0.043 Sum_probs=170.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHH
Q 010994 201 NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLIS 280 (496)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 280 (496)
...+..+...+.+.|++++|..+|+++. ...+ .+..++..+..+|...|++++|...|+++.+..+ .+..+|..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAI-LQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 3446666677777777777777777766 3332 4566677777777777777777777777766443 44566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCC---------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcccHHHHHH
Q 010994 281 LYASLGNKSEVLRLWDLEKTACKRY---------INRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YDTRIPNAVII 350 (496)
Q Consensus 281 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 350 (496)
+|...|++++|...++.+....+.. ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7777777777777777666544310 1122334567777788888888888888776432 14667777888
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE 430 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 430 (496)
.|...|++++|...|+++.+..+. +..+|..+...|...|++++|+..|+++++ -.+.+..++..+..+|...
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALE------IQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHHC
Confidence 888888888888888888776543 677888888888888888888888888876 1223467777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhCC
Q 010994 431 GSVQDVEAFVAALRTVIPM------------NRQMYHAFIKANIRNG 465 (496)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g 465 (496)
|++++|...+++..+..|. +...|..+..++...|
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 8888888888866653221 3567888888888777
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.5e-18 Score=160.66 Aligned_cols=270 Identities=10% Similarity=-0.059 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010994 168 TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFY 247 (496)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 247 (496)
.|..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++. ..++ .+..++..+..+|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCL-ELQP-NNLKALMALAVSY 143 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHH
Confidence 34444555555555555555555554432 1234455555556666666666666665555 3222 3455566666666
Q ss_pred HhcCChHHHHHHHHHHHHhcccC---------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-CchhHHHHHHHH
Q 010994 248 IKANLIDKASDVLKKAEERLEQK---------DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY-INRDYITMLEAL 317 (496)
Q Consensus 248 ~~~~~~~~a~~~~~~m~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 317 (496)
...|++++|...|+++.+..+.. ....+..+...+...|++++|...++.+....+.. +...+..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 66666666666666665543211 12233445778888889999999998888776521 567888888999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 397 (496)
...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.+..+. +..++..+...|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999988764 336778899999999999999999999999887544 6888999999999999999999
Q ss_pred HHHHHHHHhhhcCCCC------CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994 398 QCMKAALSVYVEGKGW------KPDPKVITSILSKLGDEGSVQDVEAFVAA 442 (496)
Q Consensus 398 ~~~~~~~~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (496)
..|+++++..-...+. ..+...+..+..++...|+.+.+..+.+.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998832111110 01357888999999999999999887764
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.7e-19 Score=162.18 Aligned_cols=281 Identities=11% Similarity=0.087 Sum_probs=105.2
Q ss_pred hhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHH
Q 010994 110 RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (496)
+.|++++|.++++++.. +.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45667777777766632 347777777777777777777777542 46667777777777777777777766
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 010994 190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269 (496)
Q Consensus 190 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 269 (496)
+..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp --------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 655553 3445667777777777777777665552 155557777777777777777777777754
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 46777777777777777777777755 356777777777777777777754443321 1222244566
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHhhhcCCCCCC------CHHHHH
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG--KTERGFQCMKAALSVYVEGKGWKP------DPKVIT 421 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~ 421 (496)
..|.+.|++++|..+++...... +-....|+.+..+|++-. +..+.++.|... ..++| +...|.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~-------ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR-------VNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-------SCHHHHHHHHHTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHH
Confidence 77777777777777777776654 335666777766666542 233333333221 23333 234566
Q ss_pred HHHHHHhccCCHHHHHH
Q 010994 422 SILSKLGDEGSVQDVEA 438 (496)
Q Consensus 422 ~l~~~~~~~g~~~~a~~ 438 (496)
.+...|...++++.|..
T Consensus 287 e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhchHHHHHH
Confidence 66666777777776655
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=4.9e-16 Score=151.12 Aligned_cols=371 Identities=9% Similarity=-0.034 Sum_probs=271.0
Q ss_pred CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 010994 96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC 174 (496)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 174 (496)
.+...+...+. +.+.|+++.|..+|+++....| +...|..++..+.+.|++++|..+|++.... .|+...|...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 44555555566 3678999999999999999888 6889999999999999999999999999887 368888888775
Q ss_pred HH-HhcCCCCcHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHhh---------cCChHHHHHHHHHhhcCCCCCCCHH
Q 010994 175 LY-SKTGQYEKVPD----VLTEMKAK-NIFP-DNFSYRICINSYGA---------RSDLEGMEIILREMESQPHIVLDWS 238 (496)
Q Consensus 175 ~~-~~~~~~~~a~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 238 (496)
.. ...|+.+.|.+ +|++.... |..| +...|...+....+ .|+++.|.++|++.. .........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al-~~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC-VNPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT-TSCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH-hchhhhHHH
Confidence 43 45688888776 77776653 5444 45667777765544 789999999999998 421111123
Q ss_pred HHHHHHHHH-------------HhcCChHHHHHHHHHHHHh--c-------ccCc--------cchHHHHHHHHHhc---
Q 010994 239 TYASAAHFY-------------IKANLIDKASDVLKKAEER--L-------EQKD--------GIGYNFLISLYASL--- 285 (496)
Q Consensus 239 ~~~~li~~~-------------~~~~~~~~a~~~~~~m~~~--~-------~~~~--------~~~~~~l~~~~~~~--- 285 (496)
.|....... ...++++.|..++.++... + ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 1245667777777663211 1 1222 13455554433222
Q ss_pred -CCH----HHHHHHHHHHHhhcCCCCchhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCcccHH
Q 010994 286 -GNK----SEVLRLWDLEKTACKRYINRDYITMLEALMK-------LGEHE-------EAEKVLKEWELSGNSYDTRIPN 346 (496)
Q Consensus 286 -~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 346 (496)
++. ..+..+|+......+ .+...|...+..+.+ .|+++ +|..++++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 477888998888765 567788888887775 79987 8999999998632233577888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTP-NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSIL 424 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~ 424 (496)
.++..+.+.|++++|..+|+++.+..+. +. ..|..++..+.+.|+.++|..+|+++++ ..| +...+....
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-------~~~~~~~~~~~~a 397 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARE-------DARTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CTTCCTHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------ccCCchHHHHHHH
Confidence 9999999999999999999999986432 33 5899999999999999999999999987 233 333333332
Q ss_pred HH-HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCC
Q 010994 425 SK-LGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADG 479 (496)
Q Consensus 425 ~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g 479 (496)
.. +...|+.++|..+|+...+..|.++..|..++..+.+.| ++|..+|++....+
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 22 335899999999999888878889999999999999999 79999999998864
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.9e-16 Score=149.79 Aligned_cols=391 Identities=11% Similarity=-0.010 Sum_probs=241.8
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHhC----CCC---CCCcchhhhhhhHHHhhcCHHHHHHHHHhchhc---
Q 010994 58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRK----GIC---VFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD--- 127 (496)
Q Consensus 58 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 127 (496)
.......|+.|...+...|++++|++.|+...+. ... +....++..+..++...|++++|...++++...
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3344567899999999999999999999987652 101 111223445667778889999988888876543
Q ss_pred -----CC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCChhHHHHHHHH---HHhcCCCCcHHHHHHHHHHCC
Q 010994 128 -----EK-TYQTYGALLNCYVRQ--RQTDKALSHFRKMKEMGIALSTLTYNDIMCL---YSKTGQYEKVPDVLTEMKAKN 196 (496)
Q Consensus 128 -----~~-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~ 196 (496)
.+ ...++..+..++.+. +++++|...|++..+.... +...+..+..+ +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 12 255666666555554 4688899999888776322 45555555444 345577788888888887753
Q ss_pred CCCChhhHHHHHHHHhh----cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc
Q 010994 197 IFPDNFSYRICINSYGA----RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG 272 (496)
Q Consensus 197 ~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 272 (496)
+.+...+..+...+.. .|+.++|.+.+++.. ..+. .+..++..+...|...|++++|...+++..+..+ .+.
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al-~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 281 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL-EKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNA 281 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHH-HHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChH
Confidence 2244555555544443 456778888888776 4443 5667778888888888888888888888877543 445
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994 273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY 352 (496)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (496)
.++..+..+|...+....+. .. . .........+..+.|...++...+.. +.+...+..+...|
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNL---------RE-N------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhH---------HH-H------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence 56666665553321111000 00 0 00111112234678888888888764 34677888999999
Q ss_pred HhcCchhHHHHHHHHHHhcCCCCCHh--HHHHHHH-HHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994 353 CNNGLVQNAEAILEDLVEKGKATTPN--SWAVVAA-GYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429 (496)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 429 (496)
...|++++|...|++..+....|... .+..+.. .....|+.++|+..|+++++ +.|+......
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-------i~~~~~~~~~------- 410 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-------INQKSREKEK------- 410 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-------SCCCCHHHHH-------
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCcccHHHHH-------
Confidence 99999999999999998865443221 2233332 34578999999999999997 6666543322
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCC-CCCChhH
Q 010994 430 EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADG-IDEDEET 486 (496)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g-~~p~~~t 486 (496)
....+.++++......|.++.+|..++.+|...| ++|++.|++..+.| ..|+..+
T Consensus 411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 2344556666666668889999999999999999 89999999988754 2344443
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.4e-17 Score=151.47 Aligned_cols=283 Identities=10% Similarity=-0.082 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 210 (496)
...+..+...+...|++++|..+|+++.+... .+...|..+..++...|++++|...|+++.+.. +.+..++..+..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34455666666777777777777777665432 255566666666666666666666666665542 2244555555556
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHH-HH-HHHhcCCH
Q 010994 211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL-IS-LYASLGNK 288 (496)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~-~~~~~~~~ 288 (496)
+...|++++|.+.++++. .... .+...+..+... .|+......+ .. .+...|++
T Consensus 99 ~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWL-LSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHTTCHHHHHHHHHHHH-HTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-HhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 666666666666665555 2221 111111111000 0111111111 12 25566777
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHH
Q 010994 289 SEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL 368 (496)
Q Consensus 289 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (496)
++|...++.+....+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777666554 455667777777777788888888887777653 234566777888888888888888888888
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC------CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994 369 VEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP------DPKVITSILSKLGDEGSVQDVEAFVAA 442 (496)
Q Consensus 369 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (496)
.+..+. +...+..+...+...|++++|.+.+++++...-...+... +...+..+..++.+.|++++|..+++.
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 776543 6778888888888888888888888888772100000000 356777888888888888888888763
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.8e-17 Score=150.74 Aligned_cols=260 Identities=12% Similarity=-0.045 Sum_probs=192.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLY 282 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 282 (496)
.+..+...+...|++++|..+|+++. +... .+...+..+..++...|++++|...++++.+..+ .+..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVC-QAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 34555566666666666666666665 3322 3555666666666667777777777766665432 3455666666667
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH
Q 010994 283 ASLGNKSEVLRLWDLEKTACKRYINRDYITM--------------LE-ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNA 347 (496)
Q Consensus 283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 347 (496)
...|++++|...++......+ .+...+..+ .. .+...|++++|...++++.+... .+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 777777777777766655443 222222222 22 36778899999999999988743 36778899
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994 348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427 (496)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 427 (496)
+...|...|++++|...++++.+..+. +..++..+...+...|++++|...++++++ ..+.+...+..+...+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD------INPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHH
Confidence 999999999999999999999987644 688999999999999999999999999987 2334678899999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhCC--CcHHHHHHH
Q 010994 428 GDEGSVQDVEAFVAALRTVIPM------------NRQMYHAFIKANIRNG--KGVDELLDS 474 (496)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g--~~a~~~~~~ 474 (496)
...|++++|.+.++++....|. +...|..+..++.+.| ++|..++++
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999988776555 6789999999999999 677777654
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=8.5e-16 Score=147.39 Aligned_cols=348 Identities=9% Similarity=-0.093 Sum_probs=190.7
Q ss_pred CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCC---CCC---CcchhhhhhhHHHh--hcCHHHHHHHHHhchhcCCC-
Q 010994 60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGI---CVF---APCDHAVQLDLIGR--VHGFLSAESYFSNLKDDEKT- 130 (496)
Q Consensus 60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~- 130 (496)
....+|+.+...|...|++++|+..++...+... .+. .+..+......+.. .+++++|+..|+++.+.+|+
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~ 171 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence 3456789999999999999999999998875321 111 22333333333443 35699999999999998884
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChhh
Q 010994 131 YQTYGALLNC---YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNFS 203 (496)
Q Consensus 131 ~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 203 (496)
+..+..+..+ +...++.++|++.+++..+.+. .+..++..+...+.. .|++++|...+++..... +.+..+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~ 249 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence 6666666555 4456788899999999887643 366677666665554 467889999999988763 346678
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHH
Q 010994 204 YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYA 283 (496)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 283 (496)
+..+...+...|++++|...+++.. +..+ .+..++..+..+|...+....+. ..........
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~y~~~~~~~~~~----------------~~~~~~~~~~ 311 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKAL-EYIP-NNAYLHCQIGCCYRAKVFQVMNL----------------RENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHST-TCHHHHHHHHHHHHHHHHHHHHC----------------------CHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHH-HhCC-ChHHHHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHH
Confidence 8899999999999999999999987 4443 46677777777664321110000 0000000011
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHH-HHHhcCchhH
Q 010994 284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR--IPNAVII-GYCNNGLVQN 360 (496)
Q Consensus 284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~ 360 (496)
..+..+.|...++......+ .+...+..+...+...|++++|...|++..+....+... .+..+.. .+...|+.++
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 11223445555554444433 334445555555555555555555555555442221110 1111111 1234455555
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV 440 (496)
Q Consensus 361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (496)
|+..|.+..+.. |+..... +..+.+..++++.+. .-+.+..++..+..++...|++++|.+.|
T Consensus 391 Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~------~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 391 AIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLS------KNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHH------HCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555432 2221111 111223333444433 12223445555555555555556666555
Q ss_pred HHHHh
Q 010994 441 AALRT 445 (496)
Q Consensus 441 ~~~~~ 445 (496)
++..+
T Consensus 454 ~kALe 458 (472)
T 4g1t_A 454 ERGLE 458 (472)
T ss_dssp -----
T ss_pred HHHHh
Confidence 55444
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=6.6e-17 Score=143.65 Aligned_cols=261 Identities=15% Similarity=0.089 Sum_probs=188.1
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHCCCCCCh--hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010994 173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDN--FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA 250 (496)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (496)
++-....|+++.|+..++.... ..|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCC
Confidence 3445567888888887776543 23332 3445667888888888888865533 2 236777788888888888
Q ss_pred CChHHHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994 251 NLIDKASDVLKKAEERLEQK-DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329 (496)
Q Consensus 251 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (496)
++.++|++.++++...+..| +...+..+...+...|++++|++.++. ..+...+..++..+.+.|++++|...
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888887655334 445566677888888888888888875 25667788888888888888888888
Q ss_pred HHHHHhcCCCCCcccH---HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994 330 LKEWELSGNSYDTRIP---NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSV 406 (496)
Q Consensus 330 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 406 (496)
++.+.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...+++++.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~- 228 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALD- 228 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 88888763 443211 1233444455888888888888887744 3778888888888888888888888888887
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhcCCCCHHHHH
Q 010994 407 YVEGKGWKPDPKVITSILSKLGDEGSVQD-VEAFVAALRTVIPMNRQMYH 455 (496)
Q Consensus 407 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~ 455 (496)
..+-+..++..++..+...|+.++ +.++++++.+..|.++.+..
T Consensus 229 -----~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 229 -----KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp -----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 223356778888888888888865 56788888777777665543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=5.4e-17 Score=144.19 Aligned_cols=271 Identities=14% Similarity=0.068 Sum_probs=146.4
Q ss_pred HHHhhcCHHHHHHHHHhchhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCc
Q 010994 107 LIGRVHGFLSAESYFSNLKDDEKTY--QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEK 184 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 184 (496)
-....|+++.|+..++......|+. ...-.+..+|...|++++|+..++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3344555566665555544444432 2334455666666666666654433 123455556666666666666666
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 185 VPDVLTEMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 185 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
|.+.++++...+..|+ ...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665544343 33344444566666666666666544 245556666666666666666666666666
Q ss_pred HHhcccCccchHHHH----HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010994 264 EERLEQKDGIGYNFL----ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS 339 (496)
Q Consensus 264 ~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 339 (496)
.+.. |+.. ...+ +..+...|++++|..+|+++....+ .+...++.+..++.+.|++++|...++++.+.. +
T Consensus 157 ~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 157 QDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 5543 3321 1122 2223334666666666666665544 455566666666666666666666666666553 2
Q ss_pred CCcccHHHHHHHHHhcCchhH-HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 010994 340 YDTRIPNAVIIGYCNNGLVQN-AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQ 398 (496)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 398 (496)
.+..++..++..+...|+.++ +.++++++.+.++. ++. +.....+.+.++++..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~----~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPF----IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChH----HHHHHHHHHHHHHHHH
Confidence 244556666666666666654 45566666654432 222 2233444455555444
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.7e-17 Score=150.45 Aligned_cols=266 Identities=7% Similarity=-0.000 Sum_probs=134.3
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHH
Q 010994 62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCY 141 (496)
Q Consensus 62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 141 (496)
+..|..|..++.+.|++++|++.|... .++..+..++..+...|++++|+.+++...+..+++.+.+.++.+|
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 359999999999999999999999653 3566888888999999999999999998887767788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHH
Q 010994 142 VRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME 221 (496)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 221 (496)
.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 99999999998884 378889999999999999999999999977 36999999999999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994 222 IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTA 301 (496)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 301 (496)
+.++++ .+..+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++.....
T Consensus 169 ea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 169 DGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 999998 357889999999999999999966655422 22233456889999999999999999977765
Q ss_pred cCCCCchhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CcccHHHHHHHHHhcCchhHHHHHH
Q 010994 302 CKRYINRDYITMLEALMKL--GEHEEAEKVLKEWELSGNSY------DTRIPNAVIIGYCNNGLVQNAEAIL 365 (496)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (496)
. +.....|+-+.-+|++- +++.+..+.|.. +.+++| +...|..+...|...++++.|....
T Consensus 237 e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 237 E-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 5 35567788777777764 334444444431 112222 5788999999999999999988743
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=175.38 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHH
Q 010994 63 GELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYV 142 (496)
Q Consensus 63 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 142 (496)
.+|++||++||+.|+.++|.++|+.|.+... ....||+.+||+||++|+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~-------------------------------kG~~PdvvTYNtLI~Glc 176 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ-------------------------------KRKLLTLDMYNAVMLGWA 176 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH-------------------------------HHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-------------------------------cCCCCCHhHHHHHHHHHH
Confidence 3677777777777777777777766654310 011489999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHH
Q 010994 143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY-EKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME 221 (496)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 221 (496)
+.|++++|.++|++|.+.|+.||..|||++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .++
T Consensus 177 k~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL 252 (1134)
T 3spa_A 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVL 252 (1134)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHH
Confidence 9999999999999999999999999999999999999986 68999999999999999999999998766654 444
Q ss_pred HHHHHhhcCCCCCCC------HHHHHHHHHHHHhcC
Q 010994 222 IILREMESQPHIVLD------WSTYASAAHFYIKAN 251 (496)
Q Consensus 222 ~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~ 251 (496)
+.++++. .++.|+ ..+...|.+.|.+.+
T Consensus 253 ~~Vrkv~--P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 253 KAVHKVK--PTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHGGGC--CCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhC--cccCCCCCCcccccchHHHHHHHccCC
Confidence 4455553 233332 455556777777655
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=4.8e-19 Score=173.35 Aligned_cols=150 Identities=20% Similarity=0.181 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFRKMKE---MGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC 207 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 207 (496)
..+||+||++|++.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCh-HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc------cchHHHHHH
Q 010994 208 INSYGARSDL-EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD------GIGYNFLIS 280 (496)
Q Consensus 208 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~ 280 (496)
|.++++.|+. ++|.++|++|. +.|+.||..+|+.++..+.+.+ +++..+++.. +..|+ ..+...+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P-~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP-TFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC-CCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHH----HHHHHHHhCc-ccCCCCCCcccccchHHHHH
Confidence 9999999985 78999999999 8999999999999987665543 3333333311 22332 445556666
Q ss_pred HHHhcC
Q 010994 281 LYASLG 286 (496)
Q Consensus 281 ~~~~~~ 286 (496)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=2.5e-14 Score=144.87 Aligned_cols=359 Identities=10% Similarity=0.037 Sum_probs=265.2
Q ss_pred cHHHHHHHHHc---CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCC-CCCCcchhhhhhhHHHhhcCHHHHHHHH
Q 010994 46 IEPELDNWVKN---GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGI-CVFAPCDHAVQLDLIGRVHGFLSAESYF 121 (496)
Q Consensus 46 ~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 121 (496)
.++-+-.|... ....++......+++|...|.+.+|+++++.+...+. ++-+++.-..++....+. +......+.
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 34445555433 3456777788899999999999999999999995531 112233333344444444 334444444
Q ss_pred HhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCh
Q 010994 122 SNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN 201 (496)
Q Consensus 122 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 201 (496)
+.... .....+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+.
T Consensus 1045 ~kLd~-----~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p 1105 (1630)
T 1xi4_A 1045 NRLDN-----YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEP 1105 (1630)
T ss_pred HHhhh-----ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCH
Confidence 44332 1134467788889999999999988531 3333344433 667888888888755 246
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL 281 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 281 (496)
.+|..+..++...|++++|+..|.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 78889999999999999999998664 456778889999999999999999998876654 333344458889
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA 361 (496)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (496)
|++.+++++...+.+ .++...+..+...|...|++++|..+|..+ ..|..+...|++.|+++.|
T Consensus 1177 YAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 999988886444421 245567778999999999999999999885 3788899999999999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994 362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
.+.+++.. +..+|..+..+|...|++..|..+.... ..+...+..++..|.+.|.+++|..+++
T Consensus 1241 IEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I----------iv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1241 VDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI----------VVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh----------hcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998772 6688999999999999988888776542 3456667788999999999999999998
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 442 ALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 442 ~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
......+.....|+-|...|.+..
T Consensus 1305 ~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1305 AALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHhccChhHhHHHHHHHHHHHhCC
Confidence 777666677778888999999888
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.5e-16 Score=134.44 Aligned_cols=223 Identities=12% Similarity=0.038 Sum_probs=116.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC--c----cchHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK--D----GIGYN 276 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~----~~~~~ 276 (496)
.+..+...+...|++++|...|++.. +.. .+..++..+..+|...|++++|...+++..+..+.. + ..+|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 34445555555555555555555554 222 444455555555555555555555555554432211 1 34455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 010994 277 FLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG 356 (496)
Q Consensus 277 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (496)
.+...+...|++++|...|+......+. ...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 5555555555555555555555443321 123444455555555555555442 123344555555555666
Q ss_pred chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010994 357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDV 436 (496)
Q Consensus 357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 436 (496)
++++|...++++.+..+. +...|..+...+...|++++|+..++++++ -.+.+...+..+...+...|++++|
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE------KDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 666666666665554433 455555566666666666666666666655 1122345555555566666666666
Q ss_pred HHHHHHHHh
Q 010994 437 EAFVAALRT 445 (496)
Q Consensus 437 ~~~~~~~~~ 445 (496)
...++...+
T Consensus 227 ~~~~~~a~~ 235 (258)
T 3uq3_A 227 LETLDAART 235 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655544
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=4.4e-14 Score=143.20 Aligned_cols=345 Identities=10% Similarity=0.083 Sum_probs=243.4
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHH-hhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcC
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG-RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQR 145 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 145 (496)
.+...+...|.+++|.++|+.... ....+..+. ..++++.|.++.+++. +..+|..+..++.+.|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~----------~~~A~~VLie~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV----------NTSAVQVLIEHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC----------HHHHHHHHHHHHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCC
Confidence 345566677777888777777521 111122222 6777888877777553 3678888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 010994 146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILR 225 (496)
Q Consensus 146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 225 (496)
++++|++.|.+. -|...|..++.++.+.|++++|.+.|...++.. +++...+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 888888888553 377888888888888888888888888777654 33333445888888888887544332
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 010994 226 EMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY 305 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 305 (496)
. .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .
T Consensus 1191 --~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 --N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred --h-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 1 145556667888888888899988888873 37888888888888888888888855 4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994 306 INRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA 385 (496)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 385 (496)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.....+ +-....|+.+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 5578888888888888888888766543 2355566788899999999999999998887665 225567777777
Q ss_pred HHHhc--CChHHHHHHHHHHHHhhhcCCCCCC------CHHHHHHHHHHHhccCCHHHHHH--------HHH--HHHh--
Q 010994 386 GYFDA--GKTERGFQCMKAALSVYVEGKGWKP------DPKVITSILSKLGDEGSVQDVEA--------FVA--ALRT-- 445 (496)
Q Consensus 386 ~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~--------~~~--~~~~-- 445 (496)
.|++. ++..+++++|..-. .++| +...|..++..|.+.|+++.|.. .|+ .+++
T Consensus 1323 LyaKy~peklmEhlk~f~~ri-------ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRV-------NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhc-------ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence 77764 34555666665533 3444 45678889999999999999883 222 1111
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcHH
Q 010994 446 VIPMNRQMYHAFIKANIRNGKGVD 469 (496)
Q Consensus 446 ~~~~~~~~~~~l~~~~~~~g~~a~ 469 (496)
....|+..|...+.-|......++
T Consensus 1396 ~kv~n~elyykai~Fyl~~~P~~l 1419 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFKPLLL 1419 (1630)
T ss_pred cccccHHHHHHHHHHHHhhChHHH
Confidence 134677777777777776553333
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2e-15 Score=132.02 Aligned_cols=238 Identities=13% Similarity=0.014 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--C----chhH
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY--I----NRDY 310 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 310 (496)
...+..+...+...|++++|...|++..+.. .+..+|..+..++...|++++|...++......+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888999999999999999999998876 788899999999999999999999999887765422 1 4778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA 390 (496)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 390 (496)
..+...+...|++++|...++++.+.. |+ ...+...|++++|...++++....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 899999999999999999999999863 33 34577789999999999999986543 567889999999999
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcH
Q 010994 391 GKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGV 468 (496)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a 468 (496)
|++++|+..+++++. ..+.+...+..+...+...|++++|...++...+..|.+...|..+..+|...| ++|
T Consensus 153 ~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIK------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp TCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999997 234467889999999999999999999999998888889999999999999999 799
Q ss_pred HHHHHHHHhCC----CCCChhHHHHHHh
Q 010994 469 DELLDSMKADG----IDEDEETKEILVC 492 (496)
Q Consensus 469 ~~~~~~m~~~g----~~p~~~t~~~l~~ 492 (496)
...+++..+.. ..|+......++.
T Consensus 227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 227 LETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 99998887632 2266655444443
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=5.3e-15 Score=140.14 Aligned_cols=371 Identities=13% Similarity=0.054 Sum_probs=249.0
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCH---HHHHHHHHhchhcCCCHHHHHHHHHHHH
Q 010994 66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGF---LSAESYFSNLKDDEKTYQTYGALLNCYV 142 (496)
Q Consensus 66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~ 142 (496)
..+...+.+.|++++|+++|+...+.+ ++.....+..++...|+. ++|..+|++..+. ++..+..|...+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHH
Confidence 346677889999999999999998876 366666666677777877 9999999998875 6667777777566
Q ss_pred hcC-----CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC---CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 010994 143 RQR-----QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY---EKVPDVLTEMKAKNIFPDNFSYRICINSYGAR 214 (496)
Q Consensus 143 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 214 (496)
..+ ++++|...|++..+.|. ...+..|...|...+.. .++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 655 78999999999988764 34777788888776654 44566666665544 345666777778777
Q ss_pred CCh----HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhc--
Q 010994 215 SDL----EGMEIILREMESQPHIVLDWSTYASAAHFYIKAN---LIDKASDVLKKAEERLEQKDGIGYNFLISLYASL-- 285 (496)
Q Consensus 215 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-- 285 (496)
+.+ +.+..+++... ..+ |+ .+..+...|...| +.++|++.|++..+.+. ++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~-~~~--~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAAL-NTT--DI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATL 228 (452)
T ss_dssp TCGGGGHHHHHHHHHHHT-TTC--TT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGG
T ss_pred CCcccCHHHHHHHHHHHH-cCC--HH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 754 44555555554 322 33 7778999999999 99999999999988775 5555557777777655
Q ss_pred --CCHHHHHHHHHHHHhhcCCCCchhHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC----
Q 010994 286 --GNKSEVLRLWDLEKTACKRYINRDYITMLEA-L--MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG---- 356 (496)
Q Consensus 286 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 356 (496)
+++++|+..|+... ..+...+..+... + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 79999999999776 2456677777776 4 46899999999999999876 5667777777777 55
Q ss_pred -chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc--
Q 010994 357 -LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD----AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD-- 429 (496)
Q Consensus 357 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 429 (496)
++++|..+|++.. .| +...+..+...|.. ..+.++|..+|+++.+ .|. |+ ....|...|..
T Consensus 301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----~g~-~~--A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----NGQ-NS--ADFAIAQLFSQGK 368 (452)
T ss_dssp CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----TTC-TT--HHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----hCh-HH--HHHHHHHHHHhCC
Confidence 9999999999988 43 77888888888877 3499999999999987 443 33 34445555543
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC----CcHHHHHHHHH
Q 010994 430 --EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG----KGVDELLDSMK 476 (496)
Q Consensus 430 --~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~a~~~~~~m~ 476 (496)
..+.++|...++...+...++.. ..+-....... .+|..+.++.+
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~~~a~--~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDTPEAN--DLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCCHHHH--HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 46899999999988764333332 22322232222 45666665544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=3.2e-15 Score=126.84 Aligned_cols=199 Identities=17% Similarity=0.057 Sum_probs=129.7
Q ss_pred CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994 199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL 278 (496)
Q Consensus 199 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 278 (496)
++...+..+...+.+.|++++|...|++.. ..++ .+...+..+..++.+.|++++|...|++..+..+ .+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERAL-KENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 455666667777777777777777777776 5444 5666677777777777777777777777766543 445667777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH
Q 010994 279 ISLYASL-----------GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNA 347 (496)
Q Consensus 279 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 347 (496)
..++... |++++|+..++......+ .+...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 777777777777666654 455667777777777777777777777777765 46666777
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404 (496)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 404 (496)
+...|...|++++|...|++..+..+. +...+..+...+...|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777777776544 56677777777777777777777776653
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=5.8e-15 Score=125.27 Aligned_cols=196 Identities=19% Similarity=0.113 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 314 (496)
++...+..+...+...|++++|...|++..+..+ .+...+..+..++.+.|++++|+..++......+ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 4555566666666666666666666666665433 4455666666666666666666666666665544 4445555566
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHH
Q 010994 315 EALMKL-----------GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVV 383 (496)
Q Consensus 315 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 383 (496)
.++... |++++|...+++..+..+ .+...+..+...|...|++++|+..|++..+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666555 555555555554444321 123344444444444555555555555544444 244444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994 384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441 (496)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (496)
...|...|++++|+..|+++++ ..+.+...+..+..++...|++++|...++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALE------QAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4445555555555555555444 111223344444444444455554444444
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.1e-14 Score=128.62 Aligned_cols=252 Identities=9% Similarity=-0.010 Sum_probs=161.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc--chHHHHHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG--IGYNFLIS 280 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~ 280 (496)
.+......+...|++++|+..|++.. +..+ .+...+..+..+|...|++++|...+++..+....++. .+|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLE-AKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHH-HTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34445556666777777777776665 3332 33445666666777777777777777776652211111 12666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhH
Q 010994 281 LYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQN 360 (496)
Q Consensus 281 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 360 (496)
.+...|++++|+..|+......+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666554 455667777777777777777777777776652 2244455555523334458888
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHhhhcCCCCCCC------HHHHHHHHHHHhccC
Q 010994 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGK---TERGFQCMKAALSVYVEGKGWKPD------PKVITSILSKLGDEG 431 (496)
Q Consensus 361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g 431 (496)
|...|+++.+..+. +...+..+...+...|+ +++|...++++++.. .-.|+ ...+..+...+...|
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC----APGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH----GGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH----hcccccchHHHHHHHHHHHHHHHHcC
Confidence 88888888776543 46677777777777777 777888888887622 11122 246667777888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 010994 432 SVQDVEAFVAALRTVIPMNRQMYHAFIKANIR 463 (496)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (496)
++++|...+++..+..|.+...+..+......
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 88888888888887777777777666554443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=3.8e-14 Score=123.52 Aligned_cols=209 Identities=11% Similarity=-0.014 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 316 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (496)
...+..+...+...|++++|...|+++.+..+ .+..++..+...+...|++++|.+.++.+....+ .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 34455566666666666666666666655432 3455666666666667777777776666655543 345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994 317 LMKLGEHEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 395 (496)
+...|++++|..+++++.+.+..| +...+..+...|...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 667777777777777666522222 3445566666677777777777777777665433 56667777777777777777
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994 396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY 454 (496)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 454 (496)
|...++++.+ ..+.+...+..+...+...|++++|.++++.+.+..|.+....
T Consensus 194 A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQ------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHT------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHH------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 7777777765 2334555666666677777777777777777766555555443
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=6.7e-14 Score=119.49 Aligned_cols=211 Identities=12% Similarity=0.001 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994 236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE 315 (496)
Q Consensus 236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 315 (496)
+...+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++......+ .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 344555566666666666666666666655432 3455666666666666777777776666655543 34455666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 010994 316 ALMKL-GEHEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT 393 (496)
Q Consensus 316 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 393 (496)
.+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 77777777776666521122 2345566666677777777777777776665433 466677777777777777
Q ss_pred HHHHHHHHHHHHhhhcCCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994 394 ERGFQCMKAALSVYVEGKGWK-PDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH 455 (496)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 455 (496)
++|...+++++. ..+ .+...+..+...+...|+.++|..+++.+....|.++....
T Consensus 164 ~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 164 GDADYYFKKYQS------RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHH------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 777777777765 122 34555666666666777777777777766655555554443
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=1.9e-14 Score=126.97 Aligned_cols=235 Identities=12% Similarity=0.024 Sum_probs=139.7
Q ss_pred cchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHH
Q 010994 98 PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS--TLTYNDIMC 174 (496)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~ 174 (496)
++........+...|++++|+..|+++.+..| +...+..+..++...|++++|+..+++..+.+..|+ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 33444445555566666666666666665555 355667777777777777777777777766321111 223667777
Q ss_pred HHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChH
Q 010994 175 LYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254 (496)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 254 (496)
.+...|++++|...|++..+... .+..++..+..++...|++++|...+++.. .... .+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTT-TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC-CSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh-hcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766432 244567777777777777777777777776 4432 45555655552333344777
Q ss_pred HHHHHHHHHHHhcccCccchHHHHHHHHHhcCC---HHHHHHHHHHHHhhcC-CCC------chhHHHHHHHHHhcCCHH
Q 010994 255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGN---KSEVLRLWDLEKTACK-RYI------NRDYITMLEALMKLGEHE 324 (496)
Q Consensus 255 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~~~~~ 324 (496)
+|...|++..+..+ .+...+..+..++...|+ +++|...++....... .|+ ...|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777666432 334555566666666666 6666666665544331 111 134445555555556666
Q ss_pred HHHHHHHHHHhc
Q 010994 325 EAEKVLKEWELS 336 (496)
Q Consensus 325 ~a~~~~~~~~~~ 336 (496)
+|...++++.+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666555554
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=3e-14 Score=130.77 Aligned_cols=249 Identities=8% Similarity=0.024 Sum_probs=168.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhcccCccchHHHHHH
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL-IDKASDVLKKAEERLEQKDGIGYNFLIS 280 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 280 (496)
..|..+..++...|++++|+..++++. ..++ -+..+|+.+..++...|+ +++|+..|++.....+ .+...|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAI-ELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHH-HhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 345556666666777777777777666 4443 456666667777777775 7777777777766543 45566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCchh
Q 010994 281 LYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN-NGLVQ 359 (496)
Q Consensus 281 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 359 (496)
++...|++++|+..|+.+....+ .+...|..+..++.+.|++++|...++++.+..+. +...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 77777777777777777766655 55666777777777777777777777777766432 55667777777777 45546
Q ss_pred HH-----HHHHHHHHhcCCCCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccC-
Q 010994 360 NA-----EAILEDLVEKGKATTPNSWAVVAAGYFDAG--KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG- 431 (496)
Q Consensus 360 ~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 431 (496)
+| +..|++.++..+. +...|+.+...+...| ++++|++.+.++ + ..+.+...+..+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~------~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q------PSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T------TTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c------cCCCCHHHHHHHHHHHHHHhc
Confidence 66 4777777776554 6677777777777777 577888777776 4 23445567777777777663
Q ss_pred --------CHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHh
Q 010994 432 --------SVQDVEAFVAAL-RTVIPMNRQMYHAFIKANIR 463 (496)
Q Consensus 432 --------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 463 (496)
..++|.++++.+ .+..|.....|..+...+..
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 247788888887 56566666777777666554
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=5e-14 Score=129.30 Aligned_cols=239 Identities=11% Similarity=0.009 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN-KSEVLRLWDLEKTACKRYINRDYITMLE 315 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 315 (496)
...|..+...+...|++++|+..|++.....+ .+..+|+.+..++...|+ +++|+..|+......+ .+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 56678888899999999999999999988654 567889999999999997 9999999999988876 67788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh-cCChH
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD-AGKTE 394 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~ 394 (496)
++...|++++|...|+++.+... -+...|..+..++.+.|++++|+..|+++++.++. +...|+.+...+.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998753 36788999999999999999999999999998776 88999999999999 66657
Q ss_pred HH-----HHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-
Q 010994 395 RG-----FQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEG--SVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG- 465 (496)
Q Consensus 395 ~a-----~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 465 (496)
+| +..|++++. +.| +...|..+...+...| ++++|.+.+..+ +..+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~-------l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK-------LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HHHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 77 589999987 455 4578888888888888 689999999988 667888899999999998863
Q ss_pred ----------CcHHHHHHHH-HhCCCCCChhHHHH
Q 010994 466 ----------KGVDELLDSM-KADGIDEDEETKEI 489 (496)
Q Consensus 466 ----------~~a~~~~~~m-~~~g~~p~~~t~~~ 489 (496)
++|+++++++ .+ +.|+..-|..
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 5788999998 55 5677665443
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=1.3e-14 Score=125.66 Aligned_cols=208 Identities=12% Similarity=0.027 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK 319 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (496)
|..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++......+ .+...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHH
Confidence 33334444444444444444444443221 2333444444444444444444444444443332 233444444444455
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994 320 LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC 399 (496)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 399 (496)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555444432 123334444555555555555555555555544322 444555555555555666666666
Q ss_pred HHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994 400 MKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF 457 (496)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 457 (496)
++++.. ..+.+..++..+...+...|++++|...++++.+..|.+...+..+
T Consensus 182 ~~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 182 FAAVTE------QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHH------HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHH------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 655554 1222344555555555555666666666655555555555444433
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.1e-13 Score=120.50 Aligned_cols=211 Identities=10% Similarity=-0.066 Sum_probs=181.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994 272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351 (496)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (496)
...|..+...+...|++++|...|+.+....+ .+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 56788889999999999999999998887765 5678889999999999999999999999988743 366788889999
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc
Q 010994 352 YCNNGLVQNAEAILEDLVEKGKAT-TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE 430 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 430 (496)
|...|++++|..+++++.+.+..| +...+..+...+...|++++|...++++++ ..+.+...+..+...+...
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR------LNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCSCCHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHc
Confidence 999999999999999998833334 566888899999999999999999999987 2234578889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994 431 GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVC 492 (496)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~ 492 (496)
|++++|...++.+.+..+.+...+..+...+...| ++|.+.++++.+. .|+...+..++.
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~ 250 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQA 250 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHHh
Confidence 99999999999998888889999999999999999 8999999999884 577766655543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1.6e-13 Score=117.12 Aligned_cols=213 Identities=10% Similarity=-0.015 Sum_probs=180.5
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
.+...+..+...+...|++++|...++......+ .+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4556788899999999999999999998888765 567788899999999999999999999998874 33667888899
Q ss_pred HHHHhc-CchhHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994 350 IGYCNN-GLVQNAEAILEDLVEKGKATT-PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL 427 (496)
Q Consensus 350 ~~~~~~-g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 427 (496)
..|... |++++|...++++.+.+..|+ ...+..+...+...|++++|+..++++++ ..+.+...+..+...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA------AQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCchHHHHHHHHH
Confidence 999999 999999999999998322333 57889999999999999999999999987 2334578888999999
Q ss_pred hccCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994 428 GDEGSVQDVEAFVAALRTVIP-MNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVC 492 (496)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~ 492 (496)
...|++++|...++.+....| .+...+..+...+...| +.|..+++.+.+ ..|+......++.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTVLT 223 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHhc
Confidence 999999999999999888777 88889988888888888 788888888876 3577776665553
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.8e-14 Score=127.40 Aligned_cols=245 Identities=9% Similarity=-0.120 Sum_probs=119.2
Q ss_pred CCCCcHHHHHHHHHHCCCC---CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010994 180 GQYEKVPDVLTEMKAKNIF---PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKA 256 (496)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 256 (496)
|++++|...|+++.+.... .+..++..+..++...|++++|...|+++. ..+. .+..++..+...|...|++++|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRP-DMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHccCHHHH
Confidence 3444444444444443210 023334444455555555555555555544 2222 3344555555555555555555
Q ss_pred HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994 257 SDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 257 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (496)
...|++.....+ .+..++..+..++...|++++|...++.+....+ +.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 555555554332 3344555555555555555555555555544432 2222222333334456666666666555544
Q ss_pred CCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC
Q 010994 337 GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT---TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW 413 (496)
Q Consensus 337 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 413 (496)
. +++... ..++..+...++.++|...+.+..+..... +...+..+...|...|++++|...|++++. .
T Consensus 174 ~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 244 (275)
T 1xnf_A 174 S-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA-------N 244 (275)
T ss_dssp S-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------T
T ss_pred C-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------C
Confidence 2 222222 234555555556666666666555432110 135666666777777777777777777765 3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994 414 KPDPKVITSILSKLGDEGSVQDVEAFV 440 (496)
Q Consensus 414 ~p~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (496)
.|+. +.....++...|++++|.+.+
T Consensus 245 ~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 3422 112233445556666665544
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=4.2e-14 Score=122.43 Aligned_cols=210 Identities=12% Similarity=0.055 Sum_probs=164.6
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
.....|..+...+...|++++|...|+......+ .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 4557788888999999999999999998887655 567888899999999999999999999998874 33677888899
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 429 (496)
..|...|++++|...++++.+.... +...+..+...+...|++++|...+++++. ..+.+...+..+...+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVE------LNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH------hCCccHHHHHHHHHHHHH
Confidence 9999999999999999999987654 788899999999999999999999999987 234467888899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHH
Q 010994 430 EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEIL 490 (496)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l 490 (496)
.|++++|...++.+....+.+..+|..+..+|...| ++|...++++.+ +.|+.......
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~ 232 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHA 232 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHH
Confidence 999999999999998888888999999999999999 899999999988 45665544333
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=7.7e-13 Score=116.72 Aligned_cols=219 Identities=10% Similarity=-0.045 Sum_probs=99.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK----ANLIDKASDVLKKAEERLEQKDGIGYNFL 278 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 278 (496)
++..+...+...|++++|.+.|++.. +. .+...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKAC-DL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444444444444444444444444 21 222334444444444 445555555554444332 33344444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994 279 ISLYAS----LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRIPNAVII 350 (496)
Q Consensus 279 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (496)
...|.. .+++++|+..|+.....+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 444444 445555555444443331 33344444444444 455555555555444432 2333344444
Q ss_pred HHHh----cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 351 GYCN----NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD----AGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 351 ~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|+++.+ . .| ...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----~--~~-~~a~~~ 223 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-----L--EN-GGGCFN 223 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-----T--TC-HHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-----C--CC-HHHHHH
Confidence 4444 455555555555554432 33444445555555 5555555555555544 1 11 334444
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHh
Q 010994 423 ILSKLGD----EGSVQDVEAFVAALRT 445 (496)
Q Consensus 423 l~~~~~~----~g~~~~a~~~~~~~~~ 445 (496)
+...+.. .+++++|.+.+++..+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 4444444 4555555555554443
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=8.9e-13 Score=116.29 Aligned_cols=224 Identities=14% Similarity=0.016 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChhhHH
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNFSYR 205 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 205 (496)
++.++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4666777777777788888888888877763 255677777777777 778888888888777764 566677
Q ss_pred HHHHHHhh----cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcccCccchHHH
Q 010994 206 ICINSYGA----RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK----ANLIDKASDVLKKAEERLEQKDGIGYNF 277 (496)
Q Consensus 206 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 277 (496)
.+...|.. .+++++|+..|++.. +.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 77777777 788888888887776 433 55667777777777 788888888887776644 4456666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 278 LISLYAS----LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 278 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
+...|.. .+++++|+..|+.....+ +...+..+...|.. .+++++|...+++..+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 6777776 777778877777666542 34566667777777 7777777777777776542 45566666
Q ss_pred HHHHh----cCchhHHHHHHHHHHhcC
Q 010994 350 IGYCN----NGLVQNAEAILEDLVEKG 372 (496)
Q Consensus 350 ~~~~~----~g~~~~a~~~~~~~~~~~ 372 (496)
..|.. .+++++|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 777777777777777765
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.7e-14 Score=135.22 Aligned_cols=301 Identities=13% Similarity=0.051 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHC----CCCC-Ch
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS----TLTYNDIMCLYSKTGQYEKVPDVLTEMKAK----NIFP-DN 201 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 201 (496)
...+......+...|++++|...|++..+.+.. + ...|..+...+...|++++|...+++.... +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444555556666666666666666666554221 2 234556666666666666666666654332 1111 13
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHhcCC--------------------hHHHH
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQ----PHIVLDWSTYASAAHFYIKANL--------------------IDKAS 257 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~--------------------~~~a~ 257 (496)
.++..+...+...|++++|...+++.... .+......++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 34555666666677777776666655410 0000113356666677777777 77777
Q ss_pred HHHHHHHHhcc-----cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CC----chhHHHHHHHHHhcCCHHHHH
Q 010994 258 DVLKKAEERLE-----QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR-YI----NRDYITMLEALMKLGEHEEAE 327 (496)
Q Consensus 258 ~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~ 327 (496)
..+++...... .....++..+...+...|++++|...++........ ++ ...+..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 77766543211 112345677777777788888888877766554321 11 125666777777788888888
Q ss_pred HHHHHHHhcCCC-CC----cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHH
Q 010994 328 KVLKEWELSGNS-YD----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 328 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~ 397 (496)
..+++..+.... .+ ..++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777776643111 01 345666777777788888888877776543111 11 446677777788888888888
Q ss_pred HHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCH
Q 010994 398 QCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSV 433 (496)
Q Consensus 398 ~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 433 (496)
..++++++.... .+..+ ...++..+...+...|+.
T Consensus 328 ~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISRE-VGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-hcCCcchhHHHHHHHHHHHHhhHh
Confidence 888887763211 11111 123455555555555544
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=8.4e-14 Score=131.92 Aligned_cols=346 Identities=11% Similarity=0.028 Sum_probs=235.2
Q ss_pred hhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 010994 104 QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT---DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG 180 (496)
Q Consensus 104 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 180 (496)
+...+.+.|++++|..+|.++.+.+ +...+..|...|...|+. ++|...|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 4556678899999999999987653 445556677777778888 9999999988765 6667777777565555
Q ss_pred -----CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH---HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 010994 181 -----QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE---GMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252 (496)
Q Consensus 181 -----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 252 (496)
++++|...|++..+.|.. ..+..+...|...+..+ .+.+.+.... ..+. ......+...|...+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~-~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQ-AAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHH-HHTC---TTHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HCCC---HHHHHHHHHHHHcCCC
Confidence 667999999999987643 36667777777655443 3455555544 3333 3456668888888887
Q ss_pred hHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc----CCHHH
Q 010994 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLG---NKSEVLRLWDLEKTACKRYINRDYITMLEALMKL----GEHEE 325 (496)
Q Consensus 253 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 325 (496)
++++......+.......+...+..+...|...| +.++|+..|+.....+. ++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 6666665555444444455568999999999999 99999999998887765 5555556777777654 79999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHH-H--HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-----ChHHHH
Q 010994 326 AEKVLKEWELSGNSYDTRIPNAVIIG-Y--CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-----KTERGF 397 (496)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~ 397 (496)
|...|+... . -+...+..+... | ...+++++|..+|++..+.| +...+..+...|. .| +.++|+
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 999999987 3 355667777776 4 46899999999999999887 7788888888887 55 999999
Q ss_pred HHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-C-----Cc
Q 010994 398 QCMKAALSVYVEGKGWKPDPKVITSILSKLGD----EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRN-G-----KG 467 (496)
Q Consensus 398 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~ 467 (496)
.+|+++. .-+......+...|.. ..+.++|...|++..+. .++.....|...|..- | ++
T Consensus 308 ~~~~~Aa---------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 308 AHFEKAV---------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHTTT---------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHh---------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHH
Confidence 9999862 4466777777777765 34999999999987763 3455666777777642 2 57
Q ss_pred HHHHHHHHHhCCCC
Q 010994 468 VDELLDSMKADGID 481 (496)
Q Consensus 468 a~~~~~~m~~~g~~ 481 (496)
|..+|+...+.|..
T Consensus 377 A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 377 AYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCH
Confidence 88888888887743
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=1.8e-13 Score=120.83 Aligned_cols=245 Identities=12% Similarity=-0.018 Sum_probs=191.2
Q ss_pred HhhcCChHHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCC
Q 010994 211 YGARSDLEGMEIILREMESQPHI---VLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN 287 (496)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 287 (496)
....|++++|+..++++. +... +.+..++..+...+...|++++|...|+++....+ .+..+|..+...+...|+
T Consensus 15 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTC
T ss_pred cCccchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccC
Confidence 345688999999999998 4421 12467788899999999999999999999988654 567889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHH
Q 010994 288 KSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367 (496)
Q Consensus 288 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (496)
+++|...|+......+ .+...+..+..++...|++++|...++.+.+. .|+.......+..+...|++++|...+++
T Consensus 93 ~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999998888765 56788999999999999999999999999986 34554555555666778999999999988
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-----PKVITSILSKLGDEGSVQDVEAFVAA 442 (496)
Q Consensus 368 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (496)
....... +...+. ++..+...++.++|+..+.++.. ..|+ ...+..+...+...|++++|...|+.
T Consensus 170 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 170 HFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADAT-------DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCC-------SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhc-------ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8876433 444444 77778888889999999999865 3332 46788889999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCC--CcHHHHH
Q 010994 443 LRTVIPMNRQMYHAFIKANIRNG--KGVDELL 472 (496)
Q Consensus 443 ~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~ 472 (496)
.....|.+...+ ..++...| ++|++.+
T Consensus 241 al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 888665555444 44455555 4444433
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=1.1e-11 Score=121.43 Aligned_cols=430 Identities=9% Similarity=0.042 Sum_probs=293.3
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcC---HHHHHHHHHhch
Q 010994 49 ELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHG---FLSAESYFSNLK 125 (496)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~ 125 (496)
.++.-.. ..+.|...|..++..+.+.+.++.+..+|+.+.... |..+..+...+..-.+.++ ++.+..+|++..
T Consensus 54 ~lE~~l~-~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 54 KLNDMIE-EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHH-HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 3444433 346799999999999999999999999999999975 4556666666666677788 999999999999
Q ss_pred hcC---CCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHH-HCCC-CCC-hhHHHHHHHHHHh---------cCCC
Q 010994 126 DDE---KTYQTYGALLNCYVRQRQT--------DKALSHFRKMK-EMGI-ALS-TLTYNDIMCLYSK---------TGQY 182 (496)
Q Consensus 126 ~~~---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~p~-~~~~~~l~~~~~~---------~~~~ 182 (496)
... |++..|...+....+.++. +...++|+... ..|. .|+ ...|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 887 8999999988877766654 33457887754 4466 554 5678877776542 3346
Q ss_pred CcHHHHHHHHHHCCCCCChhhHH---HHHHHHh----------hcCChHHHHHHHHHhh---c--CCCCC----------
Q 010994 183 EKVPDVLTEMKAKNIFPDNFSYR---ICINSYG----------ARSDLEGMEIILREME---S--QPHIV---------- 234 (496)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~----------~~~~~~~a~~~~~~~~---~--~~~~~---------- 234 (496)
+.+..+|++........-..+|. ....... ...+++.|...+.++. . ...++
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 67888999888532111122332 2211110 0112334445554432 0 01010
Q ss_pred -C--C------HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH-HHHHH
Q 010994 235 -L--D------WSTYASAAHFYIKAN-------LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL-RLWDL 297 (496)
Q Consensus 235 -~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~ 297 (496)
| + ...|...+..--..+ ..+.+..+|++.....+ -+...|...+..+...|+.++|. ++|+.
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 0 133444443322222 12345677888877543 56788888888888999999997 99998
Q ss_pred HHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCC------------cccHHHHHHHHHhcC
Q 010994 298 EKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN---------SYD------------TRIPNAVIIGYCNNG 356 (496)
Q Consensus 298 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~g 356 (496)
.....+ .+...+...+....+.|+++.|..+|+.+.+... .|+ ..+|...+....+.|
T Consensus 370 Ai~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 887665 4555677788888899999999999999886410 132 235777778778889
Q ss_pred chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHH
Q 010994 357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA-GKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD 435 (496)
Q Consensus 357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 435 (496)
+.+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+.+++ ..+-+...+...+......|+.+.
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk------~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK------YFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH------HCCCchHHHHHHHHHHHhCCCHHH
Confidence 9999999999998761112334454444434444 458999999999998 344466677788888888999999
Q ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHH
Q 010994 436 VEAFVAALRTVIPM---NRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV 491 (496)
Q Consensus 436 a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~ 491 (496)
|..+|+......++ ....|...+.--.+.| +.+..+.+++.+. .|+......+.
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~ 581 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence 99999998886552 4467999998888999 6788999999884 46655555443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=5.7e-14 Score=131.68 Aligned_cols=302 Identities=11% Similarity=0.016 Sum_probs=226.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC----hhhHHHHHHHHhhcCChHHHHHHHHHhhc---CCC-CC
Q 010994 163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD----NFSYRICINSYGARSDLEGMEIILREMES---QPH-IV 234 (496)
Q Consensus 163 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~-~~ 234 (496)
.+....+......+...|++++|...|++..+.+.. + ...+..+...+...|++++|...+++... ..+ .+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667778888999999999999999999886322 3 35678888999999999999999987651 111 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc-Cc----cchHHHHHHHHHhcCC--------------------HH
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ-KD----GIGYNFLISLYASLGN--------------------KS 289 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 289 (496)
....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23556788889999999999999999988654221 11 3478888999999999 99
Q ss_pred HHHHHHHHHHhhcCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cccHHHHHHHHHhcCchh
Q 010994 290 EVLRLWDLEKTACKR-----YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YD----TRIPNAVIIGYCNNGLVQ 359 (496)
Q Consensus 290 ~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 359 (496)
+|...++........ .....+..+...+...|++++|...+++..+.... ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999866543221 11246788889999999999999999988754211 11 237788889999999999
Q ss_pred HHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHH
Q 010994 360 NAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ 434 (496)
Q Consensus 360 ~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 434 (496)
+|...+++..+.... ++ ..++..+...|...|++++|...+++++..............++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988753211 12 4578889999999999999999999998732111111111457778888999999999
Q ss_pred HHHHHHHHHHhc---C---CCCHHHHHHHHHHHHhCC
Q 010994 435 DVEAFVAALRTV---I---PMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 435 ~a~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~g 465 (496)
+|...+++..+. . +....++..+...+...|
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999976553 1 122457788888888877
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=1e-13 Score=130.24 Aligned_cols=285 Identities=10% Similarity=0.020 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHC----CC-CCCh
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALST----LTYNDIMCLYSKTGQYEKVPDVLTEMKAK----NI-FPDN 201 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~ 201 (496)
...+..+...+...|++++|...|++..+.+.. +. ..|..+...+...|++++|...+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344455666777778888888888777665322 22 35666677777777777777777666542 10 1112
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHh
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQP-----HIVLDWSTYASAAHFYIKANL----------IDKASDVLKKAEER 266 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~ 266 (496)
..+..+...+...|++++|...+++.. .. +.+....++..+...|...|+ .++|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------- 198 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------- 198 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------
Confidence 334445555555555555555555544 11 000112233444444444444 0000000
Q ss_pred cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 010994 267 LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-----RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-Y 340 (496)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 340 (496)
+++|+..++....... ......+..+...+...|++++|...+++..+.... .
T Consensus 199 ---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 199 ---------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 4444444443322110 011124445555555556666655555555432110 0
Q ss_pred C----cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994 341 D----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-----TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK 411 (496)
Q Consensus 341 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (496)
+ ...+..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++++.......
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 124555666666666666666666665542110 0134566667777777777777777777665211000
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 412 GWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 412 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
.......++..+...+...|++++|...+++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0001123556666677777777777777776554
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=7.9e-14 Score=131.06 Aligned_cols=273 Identities=11% Similarity=-0.003 Sum_probs=186.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhc-----ccCccch
Q 010994 204 YRICINSYGARSDLEGMEIILREMESQPHIVLDW----STYASAAHFYIKANLIDKASDVLKKAEERL-----EQKDGIG 274 (496)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~ 274 (496)
+..+...+...|++++|...|+++. +.+. .+. ..+..+...|...|++++|...+++..+.. ......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAI-QAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHH-Hhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3344555666677777777776665 3222 122 356666677777777777777777664431 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 010994 275 YNFLISLYASLGNKSEVLRLWDLEKTACK-----RYINRDYITMLEALMKLGE-----------------HEEAEKVLKE 332 (496)
Q Consensus 275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 332 (496)
+..+...|...|++++|...++....... ......+..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 67777777778888888777776554421 1223466777778888888 8888888877
Q ss_pred HHhc----CC-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 333 WELS----GN-SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMKA 402 (496)
Q Consensus 333 ~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 402 (496)
..+. +. ......+..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11 112346778888999999999999999998753211 12 23788899999999999999999999
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhCC--CcHHHHHHH
Q 010994 403 ALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI------PMNRQMYHAFIKANIRNG--KGVDELLDS 474 (496)
Q Consensus 403 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g--~~a~~~~~~ 474 (496)
++..............++..+...+...|++++|...+++..... +....++..+...|...| ++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 987331111111124677888889999999999999999776531 112457888999999999 789988888
Q ss_pred HHhC
Q 010994 475 MKAD 478 (496)
Q Consensus 475 m~~~ 478 (496)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1.2e-12 Score=107.79 Aligned_cols=167 Identities=13% Similarity=0.041 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 314 (496)
.+..+|..+...|...|++++|+..|++..+..+ .+..+|..+..+|...|++++|...+.......+ .+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 3566777778888888888888888887776543 4566777777788888888888888776666554 4556666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 394 (496)
..+...++++.|...+....+.. +.+...+..+...|.+.|++++|+..|++..+.++. +..+|..+...|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 77777788888888887777653 235566777777788888888888888887776544 6677788888888888888
Q ss_pred HHHHHHHHHHH
Q 010994 395 RGFQCMKAALS 405 (496)
Q Consensus 395 ~a~~~~~~~~~ 405 (496)
+|++.|+++++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888876
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.4e-13 Score=125.20 Aligned_cols=270 Identities=13% Similarity=0.065 Sum_probs=147.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHC----CCCC-ChhhHH
Q 010994 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALS----TLTYNDIMCLYSKTGQYEKVPDVLTEMKAK----NIFP-DNFSYR 205 (496)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~ 205 (496)
......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..| ...++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445555566666666666665554211 2 244555555666666666666665554332 1111 133455
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcC---C-CCCCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 010994 206 ICINSYGARSDLEGMEIILREMESQ---P-HIVLDWSTYASAAHFYIKANL--------------------IDKASDVLK 261 (496)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 261 (496)
.+...+...|++++|...+++.... . +......++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5566666666666666666554410 0 000112355566666666666 677776666
Q ss_pred HHHHhc-----ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CC----chhHHHHHHHHHhcCCHHHHHHHHH
Q 010994 262 KAEERL-----EQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR-YI----NRDYITMLEALMKLGEHEEAEKVLK 331 (496)
Q Consensus 262 ~m~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (496)
+..... ......++..+...+...|++++|...++........ ++ ...+..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 653321 1112245666667777777777777777755543221 11 1255666666777777777777776
Q ss_pred HHHhcCCC-CC----cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHH
Q 010994 332 EWELSGNS-YD----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMK 401 (496)
Q Consensus 332 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 401 (496)
+..+.... .+ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66543111 01 334556666667777777777777666542110 01 2356666677777777777777777
Q ss_pred HHHH
Q 010994 402 AALS 405 (496)
Q Consensus 402 ~~~~ 405 (496)
+++.
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.9e-13 Score=124.42 Aligned_cols=278 Identities=12% Similarity=0.020 Sum_probs=194.8
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC----hhhHHHHHHHHhhcCChHHHHHHHHHhhc---CCC-CCCCHH
Q 010994 167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD----NFSYRICINSYGARSDLEGMEIILREMES---QPH-IVLDWS 238 (496)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~~ 238 (496)
..+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++... ..+ .+....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556677888999999999999999886322 2 35677888889999999999998887651 111 112355
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhccc-Cc----cchHHHHHHHHHhcCC--------------------HHHHHH
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQ-KD----GIGYNFLISLYASLGN--------------------KSEVLR 293 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 293 (496)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777888999999999999999887654321 11 3377788888888888 888888
Q ss_pred HHHHHHhhcC-----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cccHHHHHHHHHhcCchhHHHH
Q 010994 294 LWDLEKTACK-----RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YD----TRIPNAVIIGYCNNGLVQNAEA 363 (496)
Q Consensus 294 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~ 363 (496)
.++....... ......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876544321 111245777788888899999999888887653111 11 2266777888888899999988
Q ss_pred HHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010994 364 ILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEA 438 (496)
Q Consensus 364 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 438 (496)
.+++..+.... ++ ..++..+...+...|++++|...+++++..............++..+...+...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88887643111 12 45677788888889999999998888876221101111113466677788888888888888
Q ss_pred HHHHHHh
Q 010994 439 FVAALRT 445 (496)
Q Consensus 439 ~~~~~~~ 445 (496)
.+++..+
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=1.6e-11 Score=110.20 Aligned_cols=187 Identities=11% Similarity=0.026 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch-hHHHHHHHHHhcCCHHHHHHHHHH
Q 010994 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR-DYITMLEALMKLGEHEEAEKVLKE 332 (496)
Q Consensus 254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 332 (496)
++|..+|++......+.+...|..++..+...|++++|..+|+......+ .+.. .|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555555554421112233455555555555555555555555544322 1122 455555555555555555555555
Q ss_pred HHhcCCCCCcccHHHHHHHH-HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994 333 WELSGNSYDTRIPNAVIIGY-CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK 411 (496)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (496)
..+... .+...|....... ...|+.++|..+|++..+..+. +...|..++..+.+.|+.++|..+|++++. .
T Consensus 160 a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~ 232 (308)
T 2ond_A 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT-----S 232 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----S
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----c
Confidence 554421 1222222222211 1246666666666665554332 455566666666666666666666666655 2
Q ss_pred -CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 412 -GWKP--DPKVITSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 412 -~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
.+.| ....|..++....+.|+.+.|..+++++.+..|
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 1233 234555555555556666666666665555444
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.2e-11 Score=110.92 Aligned_cols=217 Identities=11% Similarity=0.013 Sum_probs=144.3
Q ss_pred HHHHHHHHhchhcCC-CHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 010994 115 LSAESYFSNLKDDEK-TYQTYGALLNCYVR-------QRQT-------DKALSHFRKMKEMGIALSTLTYNDIMCLYSKT 179 (496)
Q Consensus 115 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 179 (496)
+.|...|+++....| ++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 456666666666555 57777777766653 4665 77888887777631122455777777777777
Q ss_pred CCCCcHHHHHHHHHHCCCCCC-hh-hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-hcCChHHH
Q 010994 180 GQYEKVPDVLTEMKAKNIFPD-NF-SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYI-KANLIDKA 256 (496)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 256 (496)
|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++.. +.+. .+...|........ ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-TSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888887763 343 22 67777777777888888888888777 4433 34445543333322 25788888
Q ss_pred HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CC--CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994 257 SDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-RY--INRDYITMLEALMKLGEHEEAEKVLKEW 333 (496)
Q Consensus 257 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 333 (496)
..+|++..+..+ .+...|..++..+.+.|++++|..+|+....... .| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887766543 4566777777777777888888888877766531 22 3356666777777777888887777777
Q ss_pred Hhc
Q 010994 334 ELS 336 (496)
Q Consensus 334 ~~~ 336 (496)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=4.6e-12 Score=117.73 Aligned_cols=296 Identities=10% Similarity=0.025 Sum_probs=183.8
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCC--hhHHHHHHHHH--HhcCCCCcHH-----------HHHHHHHHCCCCCCh--
Q 010994 141 YVRQRQTDKALSHFRKMKEM--GIALS--TLTYNDIMCLY--SKTGQYEKVP-----------DVLTEMKAKNIFPDN-- 201 (496)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~m~~~~~~p~~-- 201 (496)
+.+.+++++|..+++++.+. .+..| ...|..++..- .-.++.+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34578888888888777543 12122 33333333221 1122223333 666665442111010
Q ss_pred --hhHHHHHHHHhhcCChHHHHHHHHHhhcCC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC----
Q 010994 202 --FSYRICINSYGARSDLEGMEIILREMESQP----HIVL-DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK---- 270 (496)
Q Consensus 202 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---- 270 (496)
..+......+...|++++|...+++.. .. +-.+ ...++..+...|...|++++|...+++..+.....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 112224556778889999999888886 32 1111 34567778888888899999988888876542211
Q ss_pred --ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-
Q 010994 271 --DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI-----NRDYITMLEALMKLGEHEEAEKVLKEWELS----GN- 338 (496)
Q Consensus 271 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~- 338 (496)
...+++.+...|...|++++|...++.......... ..++..+..+|...|++++|...+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 234677788888888888888888887665433111 136777888888888888888888887762 22
Q ss_pred CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC----CCCCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHhhhcCC
Q 010994 339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG----KATTPNSWAVVAAGYFDAGK---TERGFQCMKAALSVYVEGK 411 (496)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~ 411 (496)
+....++..+...|.+.|++++|...+++..+.. -+.....+..+...+...|+ .++|+.++++.
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-------- 332 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-------- 332 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--------
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--------
Confidence 2234567777888888888888888888766431 11112235667777777777 66666666653
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 412 GWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 412 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
+..|+ ...+..+...|...|++++|...+++...
T Consensus 333 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22333 34566777788888888888888876544
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=7.2e-13 Score=126.33 Aligned_cols=206 Identities=9% Similarity=-0.015 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010994 253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK-SEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLK 331 (496)
Q Consensus 253 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (496)
++++...+++..... +.+...+..+..++...|++ ++|+..|+......+ .+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433321 23445566666666666666 666666666555544 345566666666666677777777776
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhc---------CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc--------CChH
Q 010994 332 EWELSGNSYDTRIPNAVIIGYCNN---------GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA--------GKTE 394 (496)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~ 394 (496)
+..+. .|+...+..+...|... |++++|...|++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66665 34455666666666666 7777888888777776544 667777777777777 7788
Q ss_pred HHHHHHHHHHHhhhcCCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcH
Q 010994 395 RGFQCMKAALSVYVEGKGWKP----DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGV 468 (496)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a 468 (496)
+|+..|+++++ +.| +...+..+..++...|++++|.+.|++.....|.+...+..+..++...| ++|
T Consensus 239 ~A~~~~~~al~-------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 239 QALSAYAQAEK-------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHH-------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888876 344 56777777788888888888888888777777777777777777777766 455
Q ss_pred HH
Q 010994 469 DE 470 (496)
Q Consensus 469 ~~ 470 (496)
++
T Consensus 312 i~ 313 (474)
T 4abn_A 312 LE 313 (474)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=4e-12 Score=104.69 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=94.4
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994 271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII 350 (496)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (496)
+...|..+...|...|++++|++.|++..+..+ .+...+..+..++.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 344566666666666666666666666555544 4445556666666666666666666666555432 23344445555
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE 430 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 430 (496)
.+...++++.|...+.+..+..+. +...+..+...|...|++++|++.|+++++ -.+.+...+..+..++.+.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTIS------IKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHH------hcchhhhHHHHHHHHHHHC
Confidence 555566666666666665554433 455555666666666666666666666655 1122344555555666666
Q ss_pred CCHHHHHHHHHHHHh
Q 010994 431 GSVQDVEAFVAALRT 445 (496)
Q Consensus 431 g~~~~a~~~~~~~~~ 445 (496)
|++++|.+.|++..+
T Consensus 155 g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 155 GLRDEAVKYFKKALE 169 (184)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 666666666665544
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=1.1e-12 Score=121.88 Aligned_cols=164 Identities=12% Similarity=0.008 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCch
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQK-----DGIGYNFLISLYASLGNKSEVLRLWDLEKTA-----CKRYINR 308 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 308 (496)
+++.+...|...|++++|...|++..+..... ...++..+..+|...|++++|+..++..... .......
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 34445555555555555555555443321111 1134555555555566666665555544441 1012234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCcccHHHHHHHHHhcCc---hhHHHHHHHHHHhcCCCC-CHhHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSG----NSYDTRIPNAVIIGYCNNGL---VQNAEAILEDLVEKGKAT-TPNSW 380 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~ 380 (496)
++..+...+.+.|++++|...+++..+.. .+.....+..+...|...|+ +++|+.++++.. ..| ....+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHH
Confidence 45555566666666666666665554321 11111224455666666666 555666555542 111 23356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 381 AVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 381 ~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..+...|...|++++|...++++++
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777778888888887777776
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=7.4e-13 Score=126.26 Aligned_cols=213 Identities=9% Similarity=-0.044 Sum_probs=142.6
Q ss_pred cCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHH
Q 010994 112 HGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQT-DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189 (496)
Q Consensus 112 ~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (496)
++++.+...++......| +...|..+...+...|++ ++|++.|++..+... .+...|..+..+|...|++++|...|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345666666666655555 567777777777777777 788777777766532 25667777777777777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhhc---------CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc--------CC
Q 010994 190 TEMKAKNIFPDNFSYRICINSYGAR---------SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA--------NL 252 (496)
Q Consensus 190 ~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~ 252 (496)
++..+. .|+...+..+..++... |++++|++.+++.. +... .+...|..+..+|... |+
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 777764 35566677777777777 77777777777766 4333 4566666777777766 77
Q ss_pred hHHHHHHHHHHHHhccc--CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 010994 253 IDKASDVLKKAEERLEQ--KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL 330 (496)
Q Consensus 253 ~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 330 (496)
+++|...|++..+..+. .+...|..+..+|...|++++|...|+......+ .+...+..+..++...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777776654321 3556667777777777777777777776666554 34455666666666666666666544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=124.33 Aligned_cols=247 Identities=14% Similarity=0.064 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC------C
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEM-------GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK------N 196 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 196 (496)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3677888889999999999999999887663 22234556777777777888888888877776653 1
Q ss_pred CCC-ChhhHHHHHHHHhhcCChHHHHHHHHHhhcC------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc--
Q 010994 197 IFP-DNFSYRICINSYGARSDLEGMEIILREMESQ------PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL-- 267 (496)
Q Consensus 197 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-- 267 (496)
-.| ...++..+...+...|++++|...+++.... .+.+.....+..+...|...|++++|...+++..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 111 2344555555666666666666666555411 1111223334444555555555555555555543320
Q ss_pred -----ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994 268 -----EQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT 342 (496)
Q Consensus 268 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (496)
.+....++..+..++...|++++|...++.+........ -....+..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~~~~~~~~ 237 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE----------------------------FGSVDDEN 237 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH----------------------------HC------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----------------------------CCCCCcch
Confidence 001123344444444444444444444444333211000 00011111
Q ss_pred cc-------HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 343 RI-------PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 343 ~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.. +..+...+...+.+.++...+........ .+..++..+...|...|++++|.++|+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 11222223344555666666666655322 2456788888889999999999999988876
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=6.6e-10 Score=108.96 Aligned_cols=393 Identities=8% Similarity=-0.064 Sum_probs=268.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC---HHHHHH
Q 010994 77 RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ---TDKALS 152 (496)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~---~~~A~~ 152 (496)
...+.+..|+..+..+ |.+...+...+..+.+.+.++.+..+|+++....| +...|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666667776665 36777788888888888999999999999999887 68889999999999999 999999
Q ss_pred HHHHHHHCC-CCCChhHHHHHHHHHHhcCCC--------CcHHHHHHHHHHC-CC-CCC-hhhHHHHHHHHh--------
Q 010994 153 HFRKMKEMG-IALSTLTYNDIMCLYSKTGQY--------EKVPDVLTEMKAK-NI-FPD-NFSYRICINSYG-------- 212 (496)
Q Consensus 153 ~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~~-~~-~p~-~~~~~~li~~~~-------- 212 (496)
+|++..... .+|++..|...+....+.++. +.+.++|+..... |. .|+ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998763 247999999888877666654 2344778776653 66 554 456766665433
Q ss_pred -hcCChHHHHHHHHHhhcCCCCCCCHHHHH---HHHHHHH----------hcCChHHHHHHHHHHHHh--ccc---Cc--
Q 010994 213 -ARSDLEGMEIILREMESQPHIVLDWSTYA---SAAHFYI----------KANLIDKASDVLKKAEER--LEQ---KD-- 271 (496)
Q Consensus 213 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~~----------~~~~~~~a~~~~~~m~~~--~~~---~~-- 271 (496)
..++++.+.++|+... ......-..+|. .....+. ...+++.|...+.++... ++. |.
T Consensus 205 eeq~~~~~~R~iy~raL-~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHhHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 2345778899999987 432211122332 2221110 012334455555544221 110 10
Q ss_pred ------------------cchHHHHHHHHHhcC-------CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHH
Q 010994 272 ------------------GIGYNFLISLYASLG-------NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA 326 (496)
Q Consensus 272 ------------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 326 (496)
...|...+..--..+ ..+.+..+|++.....+ .....|...+.-+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHH
Confidence 123444444332222 12345677888887766 5667788888888888999999
Q ss_pred H-HHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC---------CCC------------HhHHHHHH
Q 010994 327 E-KVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK---------ATT------------PNSWAVVA 384 (496)
Q Consensus 327 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~ 384 (496)
. .+|+...... +.+...|-..+...-+.|+++.|..+|+++.+... .|+ ...|...+
T Consensus 363 ~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 9999998753 34555677788888899999999999999886410 132 34688888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 010994 385 AGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE-GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIR 463 (496)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (496)
....+.|..+.|..+|.++++ ..-.+....|...+..-.+. ++.+.|.++|+...+..|.++..|...++....
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~-----~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRR-----LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-----TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-----hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 888889999999999999997 20112233444333333333 559999999998888888899999899988888
Q ss_pred CC--CcHHHHHHHHHhCC
Q 010994 464 NG--KGVDELLDSMKADG 479 (496)
Q Consensus 464 ~g--~~a~~~~~~m~~~g 479 (496)
.| +.|..+|++.....
T Consensus 517 ~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HTCHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 77 78999999988754
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=3.8e-11 Score=111.07 Aligned_cols=167 Identities=10% Similarity=-0.079 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-CCCh----hh
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTL----TYNDIMCLYSKTGQYEKVPDVLTEMKAKNI-FPDN----FS 203 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~ 203 (496)
........+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33444555666777888887777766653222221 344555566666677777666666554210 0111 12
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhc---CCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC----ccc
Q 010994 204 YRICINSYGARSDLEGMEIILREMES---QPHIV--L-DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK----DGI 273 (496)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~ 273 (496)
+..+...+...|++++|...+++... ..+.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 33444555555666666555555441 11110 1 12233344455555555555555555544322110 112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 274 GYNFLISLYASLGNKSEVLRLWDLEK 299 (496)
Q Consensus 274 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 299 (496)
++..+...+...|++++|...++...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555555443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=6.4e-11 Score=109.72 Aligned_cols=307 Identities=11% Similarity=0.062 Sum_probs=187.9
Q ss_pred CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHC--CC--CCChhHHHHHHHH--HHhcCCCCcHH---------HHHHH
Q 010994 129 KTYQTYGALLNCY--VRQRQTDKALSHFRKMKEM--GI--ALSTLTYNDIMCL--YSKTGQYEKVP---------DVLTE 191 (496)
Q Consensus 129 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~ 191 (496)
|+..+-+.|-..| .+.+++++|..+++++.+. .+ .++...|..++.. ..-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4455555566666 7788899999888887542 12 2233344444432 11223334444 66666
Q ss_pred HHHCCCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 192 MKAKNIFPDN----FSYRICINSYGARSDLEGMEIILREMESQPHIVL----DWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 192 m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
+.....+.+. ..+......+...|++++|...|++...-..-.+ ...++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6542111111 1123344556778899999988888762111112 2456677888888888988888888887
Q ss_pred HHhccc------CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-C----CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010994 264 EERLEQ------KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR-Y----INRDYITMLEALMKLGEHEEAEKVLKE 332 (496)
Q Consensus 264 ~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 332 (496)
.+.... ....+++.+..+|...|++++|...++........ + ...++..+..+|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653221 12346777888888888888888888766553221 1 124566777788888888888888887
Q ss_pred HHh-----cCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC---C-CHhHHHHHHHHHHhcCC---hHHHHHHH
Q 010994 333 WEL-----SGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA---T-TPNSWAVVAAGYFDAGK---TERGFQCM 400 (496)
Q Consensus 333 ~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~~~---~~~a~~~~ 400 (496)
..+ .. +....++..+...|.+.|++++|...+++..+.... | ....+..+...+...++ .++|+..+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 775 32 222556677777788888888888888877654211 1 12345555556666666 66666666
Q ss_pred HHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994 401 KAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 401 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
++. +..|+ ...+..+...|...|++++|...|++..
T Consensus 327 ~~~--------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 327 EKK--------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHT--------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhC--------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 552 22232 2455567777788888888888777654
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=5.6e-13 Score=119.94 Aligned_cols=241 Identities=15% Similarity=0.080 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc------C
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEER-------LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC------K 303 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 303 (496)
..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...++...... .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 444555666666666666666666665442 111233455566666666666666666666554431 1
Q ss_pred -CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhc----
Q 010994 304 -RYINRDYITMLEALMKLGEHEEAEKVLKEWELS------GN-SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK---- 371 (496)
Q Consensus 304 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 371 (496)
......+..+...+...|++++|...++++.+. +. ......+..+...|...|++++|..+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 112344556666666677777777666666543 11 112345566677777777777777777776653
Q ss_pred --CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcC--CCCCCCH-------HHHHHHHHHHhccCCHHHHHHH
Q 010994 372 --GKAT-TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEG--KGWKPDP-------KVITSILSKLGDEGSVQDVEAF 439 (496)
Q Consensus 372 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~ 439 (496)
+..| ...++..+...|...|++++|...++++++..... ....+.. ..+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1111 23467777777888888888888888777521000 0011111 1122222233444555555566
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 440 VAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 440 ~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
++......+....+|..+..+|.+.| ++|...+++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66555545556667777888888877 677777777654
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=3e-10 Score=104.97 Aligned_cols=195 Identities=11% Similarity=0.008 Sum_probs=128.1
Q ss_pred hhHHHhhcCHHHHHHHHHhchhcCC--CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh----hHHHHHH
Q 010994 105 LDLIGRVHGFLSAESYFSNLKDDEK--TY----QTYGALLNCYVRQRQTDKALSHFRKMKEMGI-ALST----LTYNDIM 173 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~ 173 (496)
...+...|++++|...+++.....| +. .+++.+...+...|++++|...+++...... .++. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4456678999999999888766543 22 2456677788888999999999888754311 1122 2356677
Q ss_pred HHHHhcCCCCcHHHHHHHHHHC----CCC--CC-hhhHHHHHHHHhhcCChHHHHHHHHHhhc---CCCCCCCHHHHHHH
Q 010994 174 CLYSKTGQYEKVPDVLTEMKAK----NIF--PD-NFSYRICINSYGARSDLEGMEIILREMES---QPHIVLDWSTYASA 243 (496)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l 243 (496)
..+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++... ..+......++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7888899999999998887653 221 22 34556677788889999999998887651 12221123566778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccCcc-chHHH-----HHHHHHhcCCHHHHHHHHHHHH
Q 010994 244 AHFYIKANLIDKASDVLKKAEERLEQKDG-IGYNF-----LISLYASLGNKSEVLRLWDLEK 299 (496)
Q Consensus 244 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~-----l~~~~~~~~~~~~a~~~~~~~~ 299 (496)
...+...|++++|...+++.......++. ..+.. .+..+...|++++|...++...
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 88888899999999999887654322222 11211 2233556677777766666544
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.1e-10 Score=99.78 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 316 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (496)
...+......+...|++++|...|++..+..+.++...+..+..++...|++++|+..++......+ .+...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence 3445555555555555555555555555544323444444455555555555555555554444333 233444445555
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 010994 317 LMKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~ 336 (496)
+...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 55555555555555554443
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=8.4e-11 Score=108.92 Aligned_cols=163 Identities=13% Similarity=0.032 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcc-----cCccchHHHHHHHHHhcCCHHHHHHHHHHHHh-----hcCCCCch
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLE-----QKDGIGYNFLISLYASLGNKSEVLRLWDLEKT-----ACKRYINR 308 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 308 (496)
+++.+..+|...|++++|...|++..+... .....++..+..+|...|++++|...++.... ..+ ....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHH
Confidence 444455555555555555555554433211 01123455555555666666666665555444 222 1244
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCc---hhHHHHHHHHHHhcCCCC-CHhHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYD----TRIPNAVIIGYCNNGL---VQNAEAILEDLVEKGKAT-TPNSW 380 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~ 380 (496)
++..+...+.+.|++++|...+++..+.....+ ...+..+...|...++ +++|+..+++. +..| ....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 555556666666666666666666554321111 1123344444445555 55555555542 1111 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 381 AVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 381 ~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..+...|...|++++|...|+++++
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5677777777777777777777665
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=8.7e-11 Score=96.52 Aligned_cols=129 Identities=16% Similarity=0.063 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLY 282 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 282 (496)
.+..+...+...|++++|...++++. .... .+...+..+...+...|++++|...++++.+..+ .+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVY-DADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTC-CTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 34445555555666666666665554 3322 3445555555555555555555555555544322 2334444455555
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 283 ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
...|++++|.+.++......+ .+...+..+...+...|++++|...++.+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 555555555555554444332 2333334444444444444444444444433
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=5.5e-11 Score=117.95 Aligned_cols=166 Identities=14% Similarity=0.041 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994 236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE 315 (496)
Q Consensus 236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 315 (496)
+..+|+.|...|.+.|++++|+..|++..+..+ .+..+|..+..+|.+.|++++|+..|++..+..+ .+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 356677777777777777777777777766543 4456777777777777888888877777776654 45567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 395 (496)
++...|++++|.+.|++..+... -+...|+.+...|.+.|++++|+..|++..+.++. +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 78888888888888877777632 24567777788888888888888888888776544 66777888888888888888
Q ss_pred HHHHHHHHHH
Q 010994 396 GFQCMKAALS 405 (496)
Q Consensus 396 a~~~~~~~~~ 405 (496)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877766
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.9e-10 Score=94.52 Aligned_cols=164 Identities=13% Similarity=0.011 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994 238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 317 (496)
Q Consensus 238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (496)
..+..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++......+ .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 3455566666667777777777766554332 3455666666667777777777777766655543 4455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 397 (496)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777666553 234555666666667777777777777776665433 5566666777777777777777
Q ss_pred HHHHHHHH
Q 010994 398 QCMKAALS 405 (496)
Q Consensus 398 ~~~~~~~~ 405 (496)
..++++++
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=5.4e-11 Score=105.18 Aligned_cols=228 Identities=14% Similarity=0.038 Sum_probs=142.7
Q ss_pred HhcCCCCcHHHHHHHHHHC-------CCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcC------CCCCCCHHHHHHH
Q 010994 177 SKTGQYEKVPDVLTEMKAK-------NIFPDNFSYRICINSYGARSDLEGMEIILREMESQ------PHIVLDWSTYASA 243 (496)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 243 (496)
...|++++|...|++..+. ..+....++..+..++...|++++|...+++.... .+.+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3557777777777766552 11123456777777888888888888877776511 2222345667778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhc-------ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CC-CCchh
Q 010994 244 AHFYIKANLIDKASDVLKKAEERL-------EQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC------KR-YINRD 309 (496)
Q Consensus 244 i~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~-~~~~~ 309 (496)
...|...|++++|...|++..... .+....++..+...+...|++++|...++...... .. ....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888888888776541 12335667788888888888888888888766651 11 22356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCc-ccHHHHHHHHHhcCchhHHHH------HHHHHHhcCCCC
Q 010994 310 YITMLEALMKLGEHEEAEKVLKEWELS-------GNSYDT-RIPNAVIIGYCNNGLVQNAEA------ILEDLVEKGKAT 375 (496)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~~~~a~~------~~~~~~~~~~~p 375 (496)
+..+...+...|++++|...++++.+. ...+.. ..+..+...+...+....+.. .++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 777888888888888888888887753 112222 233333333333333222222 22111111 111
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 376 TPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
...++..+...|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344678888899999999999999988875
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=2e-10 Score=113.97 Aligned_cols=165 Identities=18% Similarity=0.097 Sum_probs=120.7
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994 271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII 350 (496)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (496)
+..+|+.+...|.+.|++++|++.|++..+..+ .+...+..+..+|.+.|++++|...|++..+... -+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 356777788888888888888888887777655 4556777777778888888888888877777632 24566777777
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhc
Q 010994 351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGD 429 (496)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 429 (496)
+|.+.|++++|++.|++..+.+.. +...|+.+...|...|++++|++.|+++++ +.|+ ...+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-------l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK-------LKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHhhhhhHHHh
Confidence 777778888888888777776544 566777777777778888888888877776 4443 4667777777777
Q ss_pred cCCHHHHHHHHHHHHh
Q 010994 430 EGSVQDVEAFVAALRT 445 (496)
Q Consensus 430 ~g~~~~a~~~~~~~~~ 445 (496)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 7777777777776654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=2.1e-10 Score=97.93 Aligned_cols=207 Identities=9% Similarity=-0.062 Sum_probs=158.9
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
.|+..+......+...|++++|+..|+......+.++...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999998888776566677777999999999999999999999987433 567788899
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC---HHH
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTP-------NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD---PKV 419 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~ 419 (496)
..|...|++++|...+++..+..+. +. ..|..+...+...|++++|++.|+++++ ..|+ ...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD-------VTSKKWKTDA 155 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------SSCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh-------cCCCcccHHH
Confidence 9999999999999999999987654 55 4588888999999999999999999986 5676 456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994 420 ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVC 492 (496)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~g~~p~~~t~~~l~~ 492 (496)
+..+..++... +..+++.+....+.+...|..........=++|+..+++..+ +.|+......++.
T Consensus 156 ~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 156 LYSLGVLFYNN-----GADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 77777777544 444556655555555555554443221111788888888887 4577665544443
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=2.8e-10 Score=101.15 Aligned_cols=234 Identities=12% Similarity=0.044 Sum_probs=148.2
Q ss_pred CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc-C-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010994 183 EKVPDVLTEMKAKNIFPDNFSYRICINSYGAR-S-DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVL 260 (496)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 260 (496)
.+|.+++.+..+. .++....| .+ +... + ++++|...|++. ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KL---FSGSDSYKFEEAADLCVQA----------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hh---cCCCCCccHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHH
Confidence 4566666666654 23222222 22 1111 2 366776666665 23466778888888887
Q ss_pred HHHHHhc----ccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-C----chhHHHHHHHHHhc-CCHHHHHHH
Q 010994 261 KKAEERL----EQK-DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY-I----NRDYITMLEALMKL-GEHEEAEKV 329 (496)
Q Consensus 261 ~~m~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~ 329 (496)
.+..+.. ..+ ...+|+.+..+|...|++++|+..++......... + ..++..+...|... |++++|...
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 7765432 111 14567778888888888888888887665543211 1 24577788888885 888888888
Q ss_pred HHHHHhcCCCC-C----cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH------hHHHHHHHHHHhcCChHHHHH
Q 010994 330 LKEWELSGNSY-D----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTP------NSWAVVAAGYFDAGKTERGFQ 398 (496)
Q Consensus 330 ~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~ 398 (496)
+++..+..... + ..++..+...|.+.|++++|+..|++..+....... ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877642111 1 245777888889999999999999998876543222 156778888889999999999
Q ss_pred HHHHHHHhhhcCCCCCCCHH------HHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 010994 399 CMKAALSVYVEGKGWKPDPK------VITSILSKLG--DEGSVQDVEAFVAALR 444 (496)
Q Consensus 399 ~~~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~ 444 (496)
.|+++++ +.|+.. .+..++.++. ..+++++|...|+.+.
T Consensus 221 ~~~~al~-------l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 221 TLQEGQS-------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHGGGC-------C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHh-------hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 9999875 444422 3444555553 4456777777765544
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=1.5e-09 Score=94.48 Aligned_cols=246 Identities=11% Similarity=0.049 Sum_probs=149.7
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994 211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290 (496)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (496)
..-.|++..++.-...+. .......-..+.++|...|+.+.. ....|....+..+.. |...+
T Consensus 23 ~fy~G~yq~~i~e~~~~~----~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFS----KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HHTTTCHHHHTHHHHTSS----CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHHhhHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence 334566666665333332 112223333355677777765531 011222223333332 22222
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCchhHHHHHHHHHH
Q 010994 291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN-SYDTRIPNAVIIGYCNNGLVQNAEAILEDLV 369 (496)
Q Consensus 291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (496)
++..+++....+. ++...+..+..++...|++++|.+++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQ-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5666665554432 4445556777778888888888888888766543 1245566777888888888888888888887
Q ss_pred hcCCCC-----CHhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994 370 EKGKAT-----TPNSWAVVAAG--YFDAG--KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV 440 (496)
Q Consensus 370 ~~~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (496)
+.. | +..+...+..+ ....| +..+|..+|+++.+ ..|+..+-..++.++.+.|++++|++.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~-------~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ-------TFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT-------TSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-------hCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 753 4 24555555555 33334 78888888888765 3455344444555788888888888888
Q ss_pred HHHHhc----------CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHhCCCCCChhH
Q 010994 441 AALRTV----------IPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEET 486 (496)
Q Consensus 441 ~~~~~~----------~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~g~~p~~~t 486 (496)
+.+.+. .|.++.++..+|......|++|.+++.++++ ..|+...
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHH--TTCCCHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHH--hCCCChH
Confidence 866553 2667777756665666667788888888887 4566554
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=5.5e-09 Score=90.95 Aligned_cols=240 Identities=11% Similarity=-0.051 Sum_probs=132.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHH
Q 010994 143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI 222 (496)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 222 (496)
-.|++..++.-...+. .......-..+.+++...|+++... .-.|....+..+...+ ..+ |+.
T Consensus 25 y~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp TTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHH
Confidence 3566666666222211 1112223334456666667665421 1223333333333322 222 566
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc-cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994 223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTA 301 (496)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 301 (496)
.|++.. ..+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|...
T Consensus 88 ~l~~l~-~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 88 ELENLL-KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHTT-TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 677665 333 24455555677777777888888887777554433 134556667777777777777777777777554
Q ss_pred cC---CCCchhHHHHHHHH--HhcC--CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC--
Q 010994 302 CK---RYINRDYITMLEAL--MKLG--EHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG-- 372 (496)
Q Consensus 302 ~~---~~~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 372 (496)
.+ ..+..+...+..++ ...| ++..|..+|+++.+. .|+......++.++.+.|++++|.+.++.+.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 32 00244445555442 2223 777777777777654 3332233344446777777777777777655431
Q ss_pred ---C----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 373 ---K----ATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 373 ---~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
. +-|+.++..+|......|+ +|.+++.++.+
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 1255566455555555565 67777777766
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=2e-10 Score=101.47 Aligned_cols=233 Identities=14% Similarity=0.064 Sum_probs=149.3
Q ss_pred hhcCChHHHHHHHHHhhc------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-------ccCccchHHHH
Q 010994 212 GARSDLEGMEIILREMES------QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL-------EQKDGIGYNFL 278 (496)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~l 278 (496)
...|+++.|+..+++... ..+.+....++..+...|...|++++|...+++..+.. .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666555541 22333456778889999999999999999999886542 12345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhc-----C--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-Cccc
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTAC-----K--RYINRDYITMLEALMKLGEHEEAEKVLKEWELS------GNSY-DTRI 344 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 344 (496)
...|...|++++|...++...... . ......+..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999998776652 1 123466788888899999999999999888764 1122 3456
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhc-------CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEK-------GKATT-PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP- 415 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p- 415 (496)
+..+...|...|++++|...+++..+. ...+. ...|..+...+...+....+.. +..+...........|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 778888888999999999999887753 11222 2234444444443333222222 2222211000011122
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 416 DPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 416 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
...++..+...+...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234677778888888888888888887654
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=2.9e-09 Score=94.54 Aligned_cols=209 Identities=11% Similarity=0.024 Sum_probs=148.4
Q ss_pred CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhc---CCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010994 181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES---QPHIVL-DWSTYASAAHFYIKANLIDKA 256 (496)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~-~~~~~~~li~~~~~~~~~~~a 256 (496)
++++|...|++. ...|...|++++|...|++... ..+-++ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777765 3456778888888888877651 112212 256788888999999999999
Q ss_pred HHHHHHHHHhcccC-----ccchHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCC-C----chhHHHHHHHHHhcCCHHH
Q 010994 257 SDVLKKAEERLEQK-----DGIGYNFLISLYASL-GNKSEVLRLWDLEKTACKRY-I----NRDYITMLEALMKLGEHEE 325 (496)
Q Consensus 257 ~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 325 (496)
+..|++..+..... -..+++.+...|... |++++|+..|++.....+.. + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99998876543211 135788888999996 99999999999877654321 1 3467888999999999999
Q ss_pred HHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC---HhHHHHHHHHHH--hcCCh
Q 010994 326 AEKVLKEWELSGNSYDTR------IPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT---PNSWAVVAAGYF--DAGKT 393 (496)
Q Consensus 326 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~--~~~~~ 393 (496)
|...+++..+........ .+..+..++...|++++|...|++..+..+. ++ ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999865432221 4567778888999999999999998864322 11 113445566665 45678
Q ss_pred HHHHHHHHHHH
Q 010994 394 ERGFQCMKAAL 404 (496)
Q Consensus 394 ~~a~~~~~~~~ 404 (496)
++|+..|+++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888887764
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=1.5e-07 Score=89.53 Aligned_cols=362 Identities=10% Similarity=0.011 Sum_probs=226.7
Q ss_pred hcc-ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCC-HHHHH
Q 010994 74 KRK-RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQ-TDKAL 151 (496)
Q Consensus 74 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 151 (496)
+.| ++..|..+|+.+...- |. ++++.+..+|++.....|++..|...+....+.++ .+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~~-----P~------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY-----MS------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp ------CCHHHHHHHHHHHH-----HT------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTH
T ss_pred HcCcchHHHHHHHHHHHHHC-----CC------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHH
Confidence 345 4788888888887754 21 89999999999999988999999999988888774 46677
Q ss_pred HHHHHHHHC-CCC-CChhHHHHHHHHHH----hcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC----------
Q 010994 152 SHFRKMKEM-GIA-LSTLTYNDIMCLYS----KTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS---------- 215 (496)
Q Consensus 152 ~~~~~m~~~-g~~-p~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------- 215 (496)
.+|+..... |.. ++...|...+..+. ..++.+.+..+|++........-...|...... .+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHH
Confidence 888877653 533 36778888887654 245677899999999974221112223322221 1111
Q ss_pred ----ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHhcccCccchHHHHHHHHHh
Q 010994 216 ----DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN--L-----IDKASDVLKKAEERLEQKDGIGYNFLISLYAS 284 (496)
Q Consensus 216 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 284 (496)
.+..|..+++.+. ..-...+...|...+..-...+ - .+.+..+|+++....+ .+...|...+..+.+
T Consensus 148 ~~~~~y~~ar~~y~~~~-~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQ-PLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH-HHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 2223344444443 1000013334544444432221 1 3456788998877543 557788888888999
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------CCCcccHHHHHHHH
Q 010994 285 LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN------------SYDTRIPNAVIIGY 352 (496)
Q Consensus 285 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~ 352 (496)
.|+.+.|..+++..... + .+...+. .|....+.++. ++.+.+.-. .....+|...+..+
T Consensus 226 ~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 99999999999998888 4 3332222 23322222222 222222100 01124566667767
Q ss_pred HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccC
Q 010994 353 CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA-GKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG 431 (496)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 431 (496)
.+.++.+.|..+|++. .. ...+...|...+..-... ++.+.|..+|+.+++ ..+-+...+...+....+.|
T Consensus 297 ~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~------~~~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL------KHPDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHcC
Confidence 6788899999999999 32 223445554333333333 369999999999998 23223455666777778889
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994 432 SVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK 476 (496)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 476 (496)
+.+.|..+|+.+. .....|...+.--...| +.+..+++++.
T Consensus 369 ~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 369 DEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999873 46778888888777888 56667777765
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=3.6e-09 Score=88.65 Aligned_cols=167 Identities=9% Similarity=-0.032 Sum_probs=92.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHH----------------HHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 010994 243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNF----------------LISLYASLGNKSEVLRLWDLEKTACKRYI 306 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 306 (496)
....+...|++++|...|++.....+ .+...|.. +..+|...|++++|+..|+......+ .+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CC
Confidence 34445556666666666666554332 22233333 66666777777777777776666554 45
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc--hhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 010994 307 NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL--VQNAEAILEDLVEKGKATTPNSWAVVA 384 (496)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~ 384 (496)
...+..+..++...|++++|...|+++.+..+ .+...+..+...|...|+ .+.+...++.... ..|....+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 56666667777777777777777777666532 244555566655554433 2334444444332 122222333445
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH
Q 010994 385 AGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT 421 (496)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (496)
.++...|++++|+..|+++++ +.|+.....
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~-------l~P~~~~~~ 194 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVIL-------RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTT-------TSCCHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH-------hCCCHHHHH
Confidence 555566777777777777754 556654333
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=6e-09 Score=90.89 Aligned_cols=189 Identities=10% Similarity=-0.028 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc---cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-C-chh
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD---GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY-I-NRD 309 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~ 309 (496)
.+...+..+...+.+.|++++|...|+++....+ .+ ...+..+..+|...|++++|+..|+......+.. . ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4456666677778888888888888888776543 22 4566777777888888888888888777765421 1 244
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHH
Q 010994 310 YITMLEALMK--------LGEHEEAEKVLKEWELSGNSYDT-RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW 380 (496)
Q Consensus 310 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 380 (496)
+..+..++.. .|++++|...|+++.+.. |+. .....+.. +..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 5566666766 777777777777777653 322 22211111 1111100 01124
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhc
Q 010994 381 AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVITSILSKLGDE----------GSVQDVEAFVAALRTV 446 (496)
Q Consensus 381 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 446 (496)
..+...|...|++++|+..|+++++ ..|+ ...+..+..++... |++++|...++.+.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFD-------AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH-------HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6678889999999999999999987 2333 45677777778766 8899999999999887
Q ss_pred CCCCH
Q 010994 447 IPMNR 451 (496)
Q Consensus 447 ~~~~~ 451 (496)
.|.+.
T Consensus 225 ~p~~~ 229 (261)
T 3qky_A 225 FPDSP 229 (261)
T ss_dssp CTTCT
T ss_pred CCCCh
Confidence 77664
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=3.6e-09 Score=92.33 Aligned_cols=186 Identities=8% Similarity=-0.052 Sum_probs=137.1
Q ss_pred CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc--Cccc
Q 010994 199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLD---WSTYASAAHFYIKANLIDKASDVLKKAEERLEQ--KDGI 273 (496)
Q Consensus 199 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~ 273 (496)
.+...+..+...+.+.|++++|...|+++. ...+ .+ ...+..+..+|...|++++|...|++..+..+. ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 355677778888999999999999999998 4332 23 677888999999999999999999999886442 1235
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 010994 274 GYNFLISLYAS--------LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP 345 (496)
Q Consensus 274 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 345 (496)
++..+..++.. .|++++|+..|+......+ .+.......... ..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~--------------~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKI--------------RELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHH--------------HHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHH--------------HHHHHH----HHHHH
Confidence 67778888888 9999999999998888765 222222222111 111100 01124
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCC--CHhHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKAT--TPNSWAVVAAGYFDA----------GKTERGFQCMKAALS 405 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~ 405 (496)
..+...|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|...|+++++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 567788889999999999999998765432 234677788888766 889999999999987
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=4.6e-09 Score=80.91 Aligned_cols=129 Identities=12% Similarity=0.136 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF 388 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 388 (496)
.+..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|...++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 345556666666666666666666665432 24445555666666666666666666666655432 4555666666666
Q ss_pred hcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 389 DAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
..|++++|...++++.. ..+.+...+..+...+...|++++|...++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALE------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666665 1223455566666666666666666666665544
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=6.8e-10 Score=87.56 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=103.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 010994 314 LEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT 393 (496)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 393 (496)
...+...|++++|...+....... +-+...+..+...|.+.|++++|...|++.++.++. +..+|..+...|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 344455677777877777766542 113445566777888888888888888888877655 677888888888888888
Q ss_pred HHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 394 ERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEA-FVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
++|+..|+++++ +.| +...+..+...+.+.|++++|.+ ++++..+..|.++.+|......+...|
T Consensus 82 ~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVE-------LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 888888888887 445 45677778888888888776555 457777777788888887777777766
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=8.3e-09 Score=79.41 Aligned_cols=129 Identities=14% Similarity=0.185 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994 274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC 353 (496)
Q Consensus 274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (496)
.|..+...+...|++++|..+++.+....+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 355566666667777777777766655543 344556666666666677777777777666553 224445566666666
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..|++++|...++++.+.... +...+..+...+...|++++|...+++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777777766665432 455666666667777777777777766654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=9.4e-09 Score=102.50 Aligned_cols=173 Identities=11% Similarity=-0.060 Sum_probs=144.2
Q ss_pred HhcCChHHHHHHHHHHH--------HhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 010994 248 IKANLIDKASDVLKKAE--------ERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK 319 (496)
Q Consensus 248 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (496)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+......+ .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 77899999999999987 322 35567888899999999999999999998888766 667888899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994 320 LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC 399 (496)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 399 (496)
.|++++|...|++..+... .+...+..+..+|.+.|++++ ...|++..+.++. +...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998743 267788899999999999999 9999999987765 778999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCC
Q 010994 400 MKAALSVYVEGKGWKPDP-KVITSILSKLGDEGS 432 (496)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 432 (496)
|+++++ ..|+. ..+..+..++...|+
T Consensus 557 ~~~al~-------l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP-------TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT-------TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc-------cCcccHHHHHHHHHHHHccCC
Confidence 999865 66764 567777777766554
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=2.2e-07 Score=81.77 Aligned_cols=219 Identities=6% Similarity=-0.046 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhcccCccchHHHHHHHH----Hhc---CCH
Q 010994 218 EGMEIILREMESQPHIVLDWSTYASAAHFYIKAN--LIDKASDVLKKAEERLEQKDGIGYNFLISLY----ASL---GNK 288 (496)
Q Consensus 218 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~---~~~ 288 (496)
++|+++++.+. ..++ -+..+|+.--..+...| +++++++.++.+....+ .+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L-~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGI-NELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHH-HHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35555555554 3332 33444555445555555 55555555555554332 3334444433333 333 445
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc------hhH
Q 010994 289 SEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHE--EAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL------VQN 360 (496)
Q Consensus 289 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 360 (496)
++++.+++.+....+ .+...|+--...+.+.|.++ ++.+.++.+.+..+. |...|+.-...+.+.|+ +++
T Consensus 127 ~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 555555555544433 33444444444444445444 555555555544322 33444444434444443 445
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH-HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010994 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER-GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAF 439 (496)
Q Consensus 361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 439 (496)
+++.+++++..++. |...|+.+...+.+.|+... +..+..++... +..-..+...+..+...+.+.|+.++|.++
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDL---EKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG---GGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhc---cCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555555444 55555555555555555333 22233333220 000122344444455555555555555555
Q ss_pred HHHHHh
Q 010994 440 VAALRT 445 (496)
Q Consensus 440 ~~~~~~ 445 (496)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554443
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=8e-09 Score=86.53 Aligned_cols=161 Identities=9% Similarity=-0.085 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010994 276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT----------------MLEALMKLGEHEEAEKVLKEWELSGNS 339 (496)
Q Consensus 276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~ 339 (496)
......+...|++++|+..|+......+ .+...+.. +..++.+.|++++|...+++..+..+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP- 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
Confidence 3445567788888888888887776654 33344444 56666666666666666666665532
Q ss_pred CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994 340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK--TERGFQCMKAALSVYVEGKGWKPDP 417 (496)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~p~~ 417 (496)
.+...+..+...|...|++++|...|++..+.++. +...|..+...|...|+ .+.+...++.+.. ..|..
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 157 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-------PTKMQ 157 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-------CCHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-------CCchh
Confidence 24455566666666666666666666666665443 55566666665554433 2233344433321 11222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
..+.....++...|++++|...|++..+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22333334445556666666666665553
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=1.2e-08 Score=101.76 Aligned_cols=176 Identities=9% Similarity=-0.054 Sum_probs=145.8
Q ss_pred hhcCChHHHHHHHHHhhc------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 010994 212 GARSDLEGMEIILREMES------QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASL 285 (496)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 285 (496)
...|++++|++.+++... ....+.+...+..+...|...|++++|...|++..+..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 788999999999998860 022235667888899999999999999999999988654 5678899999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHH
Q 010994 286 GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAIL 365 (496)
Q Consensus 286 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (496)
|++++|+..|+......+ .+...+..+..++.+.|++++ ...|++..+... .+...+..+..+|.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999888776 567888999999999999999 999999998743 35678889999999999999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994 366 EDLVEKGKATTPNSWAVVAAGYFDAGK 392 (496)
Q Consensus 366 ~~~~~~~~~p~~~~~~~l~~~~~~~~~ 392 (496)
++..+.++. +...+..+..++...++
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 999886543 46678888888777665
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=1.8e-07 Score=82.39 Aligned_cols=213 Identities=8% Similarity=0.028 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcccCccchHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCCchhHHHHHHHH----Hhc---CCHH
Q 010994 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLG--NKSEVLRLWDLEKTACKRYINRDYITMLEAL----MKL---GEHE 324 (496)
Q Consensus 254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 324 (496)
++|+..++.+....+ .+..+|+.-..++...| +++++++.++.+....+ .+...|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 345555555544332 23334444444444444 55555555555544433 2333333322222 223 4455
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh--HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC------hHHH
Q 010994 325 EAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ--NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK------TERG 396 (496)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~a 396 (496)
++..+++.+.+...+ +..+|+.-.-.+.+.|.++ +++..++++.+.++. |...|+.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 555555555544322 4444444444444445444 555555555555444 55555544444444444 4555
Q ss_pred HHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCC--CcHHH
Q 010994 397 FQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD-VEAFVAALRTVI---PMNRQMYHAFIKANIRNG--KGVDE 470 (496)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~a~~ 470 (496)
++.+++++. -.+-|...|+.+...+.+.|+... +..+.+.+.+.. +.++..+..+.++|.+.| ++|++
T Consensus 206 l~~~~~aI~------~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 206 LNYVKDKIV------KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHH------HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHH------hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 555555554 122234444444444444444222 333444333321 344455555555555554 45555
Q ss_pred HHHHHH
Q 010994 471 LLDSMK 476 (496)
Q Consensus 471 ~~~~m~ 476 (496)
+++.+.
T Consensus 280 ~~~~l~ 285 (306)
T 3dra_A 280 VYDLLK 285 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=4.9e-08 Score=82.86 Aligned_cols=188 Identities=13% Similarity=-0.059 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc--hhHH
Q 010994 236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD--GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN--RDYI 311 (496)
Q Consensus 236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 311 (496)
+...+..+...+...|++++|...|+++....+... ...+..+..++.+.|++++|+..|+......+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677888999999999999999887644221 256778888999999999999999988887663222 2344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHH-----------
Q 010994 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW----------- 380 (496)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----------- 380 (496)
.+..++...|.. .+ ..|..+...+...|++++|...|+++++..+. +...+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHH
Confidence 455555442210 00 01112222233445555555555555554322 11111
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 381 ------AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP----KVITSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 381 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
..+...|.+.|++++|+..|+++++ ..|+. ..+..+..++.+.|++++|.+.++.+....|
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLR-------DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 2345556677777777777777766 22321 3456666677777777777777776655433
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=1.1e-08 Score=83.26 Aligned_cols=162 Identities=10% Similarity=-0.053 Sum_probs=112.2
Q ss_pred hhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH-HH
Q 010994 100 DHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCL-YS 177 (496)
Q Consensus 100 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~ 177 (496)
........+.+.|++++|...|+++....| +...+..+...+.+.|++++|...|+...... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344455667788888888888888887766 57888888999999999999999998876653 344433332222 22
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010994 178 KTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVL-DWSTYASAAHFYIKANLIDKA 256 (496)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 256 (496)
..++..+|...+++..+.. +-+...+..+..++...|++++|...|+++. ..++.+ +...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNIL-KVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2234445677777777642 1246677777788888888888888888877 544322 345677777888888888888
Q ss_pred HHHHHHHHH
Q 010994 257 SDVLKKAEE 265 (496)
Q Consensus 257 ~~~~~~m~~ 265 (496)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776543
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.01 E-value=2.8e-09 Score=84.00 Aligned_cols=142 Identities=6% Similarity=-0.041 Sum_probs=78.7
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 010994 246 FYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEE 325 (496)
Q Consensus 246 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (496)
.+...|++++|+..+.......+ .+...+..+...|.+.|++++|++.|+......+ .+...|..+..++.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 34445556666666655443221 2334455566666666666666666666555544 445566666666666666666
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHH-HHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994 326 AEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAI-LEDLVEKGKATTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~ 391 (496)
|...|+...+..+ -+...+..+...|.+.|++++|.+. +++..+..+. ++..|......+...|
T Consensus 84 A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666665532 1345556666666666666554443 4555555433 4555555555555444
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=7.6e-09 Score=84.12 Aligned_cols=161 Identities=9% Similarity=-0.021 Sum_probs=93.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH-HHh
Q 010994 241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA-LMK 319 (496)
Q Consensus 241 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 319 (496)
..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..++......+ +...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 3345556666666666666666544332 3445566666666666666666666665444332 22222111111 112
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHHHH
Q 010994 320 LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT-TPNSWAVVAAGYFDAGKTERGFQ 398 (496)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 398 (496)
.++...|...+++..+..+ .+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2223345666666666532 245666677777777777777777777777665432 34567777777777777777777
Q ss_pred HHHHHHH
Q 010994 399 CMKAALS 405 (496)
Q Consensus 399 ~~~~~~~ 405 (496)
.|++++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=1.2e-07 Score=80.34 Aligned_cols=186 Identities=6% Similarity=-0.079 Sum_probs=122.2
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc--chH
Q 010994 200 DNFSYRICINSYGARSDLEGMEIILREMESQPHI-VL-DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG--IGY 275 (496)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~ 275 (496)
+...+..+...+.+.|++++|+..|+++. ...+ .+ ....+..+..+|.+.|++++|+..|+++.+..+.... .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 44556677788999999999999999998 3322 12 2457778899999999999999999999886543221 245
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010994 276 NFLISLYAS------------------LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSG 337 (496)
Q Consensus 276 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (496)
..+..++.. .|++++|...|+......+ .+........... .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHHH----------HHHHHHH---
Confidence 555555554 3455555555555554433 1111111110000 0000000
Q ss_pred CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 338 NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.....+...|.+.|++++|...|+++.+..+... ...+..+..++.+.|+.++|.+.++.+..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 0112456678889999999999999988654311 24688899999999999999999998876
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=8.1e-07 Score=84.53 Aligned_cols=375 Identities=11% Similarity=0.021 Sum_probs=227.1
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcC-HHHHHHHHHhchhc---C-CCHHHHHHH
Q 010994 63 GELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHG-FLSAESYFSNLKDD---E-KTYQTYGAL 137 (496)
Q Consensus 63 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~---~-~~~~~~~~l 137 (496)
..|...+..+-. |+++.+..+|+...... ++.+.+...+....+.+. .+.....|+.+... + .+...|...
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 445555555544 89999999999999965 466666666666666553 35566777776653 2 367889888
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-------------CCCCcHHHHHHHHHHCCCCCC
Q 010994 138 LNCYV----RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT-------------GQYEKVPDVLTEMKAKNIFPD 200 (496)
Q Consensus 138 i~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~m~~~~~~p~ 200 (496)
+..+. ..|+.+.+.++|++........-...|......-... +.+..|..+++.+...-...+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 87754 3567899999999998842211122233322211111 122233444444433100013
Q ss_pred hhhHHHHHHHHhhcC--C-----hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccc
Q 010994 201 NFSYRICINSYGARS--D-----LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI 273 (496)
Q Consensus 201 ~~~~~~li~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 273 (496)
...|...+.--...+ - .+.+..+|+++. ... +.+...|...+..+.+.|+.+.|..+|++.... +.+..
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al-~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL-DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 335555554432221 1 245677888887 433 255777888888889999999999999999887 23333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhc------------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010994 274 GYNFLISLYASLGNKSEVLRLWDLEKTAC------------KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD 341 (496)
Q Consensus 274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (496)
.|.. |....+.++. ++.+.... .......|...+....+.++.+.|..+|+.+ +. ...+
T Consensus 248 l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~ 318 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVG 318 (493)
T ss_dssp HHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCC
T ss_pred HHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCC
Confidence 3332 2222222222 22222111 0011244666666666788899999999999 32 1223
Q ss_pred cccHHHHHHHHHh-cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHH
Q 010994 342 TRIPNAVIIGYCN-NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVI 420 (496)
Q Consensus 342 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 420 (496)
..+|......-.. .++.+.|..+|+...+.... +...|...+......|+.+.|..+|+++. .....|
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~----------k~~~lw 387 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE----------KTSRMW 387 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC----------CBHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHH
Confidence 3333322222222 34699999999999886432 45566777888888999999999999852 246778
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcC------CCC------------HHHHHHHHHHHHhCC
Q 010994 421 TSILSKLGDEGSVQDVEAFVAALRTVI------PMN------------RQMYHAFIKANIRNG 465 (496)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~------------~~~~~~l~~~~~~~g 465 (496)
...+..-...|+.+.+..++++..... .|. ..++..++.-|.-..
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~ 450 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLD 450 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhc
Confidence 888877778899999999888665421 111 156777788885544
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=1.6e-08 Score=99.09 Aligned_cols=152 Identities=11% Similarity=-0.059 Sum_probs=105.7
Q ss_pred cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329 (496)
Q Consensus 250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (496)
.|++++|...|++..+..+ .+...|..+...+...|++++|.+.+++.....+ .+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888766543 4567788888888888888888888887777655 5567788888888888888888888
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 010994 330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA---GKTERGFQCMKAALS 405 (496)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 405 (496)
+++..+... .+...+..+...|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 888887642 25667778888888888888888888888876544 667788888888888 888888888888877
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=1.2e-08 Score=91.22 Aligned_cols=96 Identities=9% Similarity=0.104 Sum_probs=58.0
Q ss_pred ccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010994 75 RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHF 154 (496)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 154 (496)
.|++++|.++++...+.. +.. .+...++++.|...|.. ....|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~-----~~~------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-----KTS------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CCC------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-----ccc------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHH
Confidence 567778888887776643 111 11114666666665543 455677788888888888
Q ss_pred HHHHHC----CCCC-ChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994 155 RKMKEM----GIAL-STLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194 (496)
Q Consensus 155 ~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (496)
.+..+. |-.+ -..+|+.+..+|...|++++|...|++..+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 776432 1100 133566666777777777777777766543
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=1.9e-08 Score=88.86 Aligned_cols=162 Identities=9% Similarity=-0.083 Sum_probs=102.1
Q ss_pred chhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH-HHHH
Q 010994 99 CDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI-MCLY 176 (496)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~ 176 (496)
.........+.+.|++++|...|+++....| +...+..+...+.+.|++++|...+++.... .|+....... ...+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 3344445555666666666666666666666 4666777777777777777777777776554 2333322222 2235
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCChHH
Q 010994 177 SKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIV-LDWSTYASAAHFYIKANLIDK 255 (496)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~ 255 (496)
...++.+.|...+++..... +.+...+..+...+...|++++|...++++. ..++. .+...+..++..|...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l-~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHL-RXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcccccccchHHHHHHHHHHHcCCCCc
Confidence 56666777777777776652 2345666777777777777777777777776 33221 225567777777777777777
Q ss_pred HHHHHHHHH
Q 010994 256 ASDVLKKAE 264 (496)
Q Consensus 256 a~~~~~~m~ 264 (496)
|...|++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=2.7e-08 Score=87.88 Aligned_cols=164 Identities=10% Similarity=0.012 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994 238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 317 (496)
Q Consensus 238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (496)
..+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...++......+ ............+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHHHHH
Confidence 3344445555555555555555555544332 3344455555555555555555555554433322 1111111122223
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHH
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT-TPNSWAVVAAGYFDAGKTERG 396 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 396 (496)
...++.+.|...+++..+.. +.+...+..+...|...|++++|...|.++.+..+.. +...+..++..+...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 34444444555555544442 1233444455555555555555555555555443221 133455555555555555555
Q ss_pred HHHHHHHH
Q 010994 397 FQCMKAAL 404 (496)
Q Consensus 397 ~~~~~~~~ 404 (496)
...|++.+
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=2.6e-07 Score=77.51 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=118.7
Q ss_pred HHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC----CCCcHHHHHHH
Q 010994 116 SAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG----QYEKVPDVLTE 191 (496)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 191 (496)
+|.++|.+..+. .++..+..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|++
T Consensus 4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 345555555543 356777777778878888888888888877764 56777777777776 5 77788888888
Q ss_pred HHHCCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 010994 192 MKAKNIFPDNFSYRICINSYGA----RSDLEGMEIILREMESQPHIV-LDWSTYASAAHFYIK----ANLIDKASDVLKK 262 (496)
Q Consensus 192 m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~ 262 (496)
..+.| +...+..+...|.. .+++++|..+|++.. +.+.. .+...+..|...|.. .++.++|...|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 77654 45666677777766 778888888888876 54421 015666667777777 6777888888877
Q ss_pred HHHhcccCccchHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhc
Q 010994 263 AEERLEQKDGIGYNFLISLYASL-G-----NKSEVLRLWDLEKTAC 302 (496)
Q Consensus 263 m~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 302 (496)
..+. ..+...+..+...|... | +.++|...|+.....+
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7654 13344566666666543 2 6777777777665554
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=2.5e-08 Score=89.18 Aligned_cols=229 Identities=8% Similarity=0.022 Sum_probs=146.1
Q ss_pred cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010994 179 TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASD 258 (496)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 258 (496)
.|++++|.+++++..+... .. .+...++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 4566677777776665311 11 011146666666666554 446777889999988
Q ss_pred HHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CC--chhHHHHHHHHHhcCCHHHHHH
Q 010994 259 VLKKAEERLEQK-----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR---YI--NRDYITMLEALMKLGEHEEAEK 328 (496)
Q Consensus 259 ~~~~m~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~ 328 (496)
.|.+..+..... -..+|+.+...|...|++++|+..|+........ +. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888775542211 1346788888888889999999888876554321 11 2456777778877 99999998
Q ss_pred HHHHHHhcCCCC-----CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC----CCC-HhHHHHHHHHHHhcCChHHHHH
Q 010994 329 VLKEWELSGNSY-----DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK----ATT-PNSWAVVAAGYFDAGKTERGFQ 398 (496)
Q Consensus 329 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~p~-~~~~~~l~~~~~~~~~~~~a~~ 398 (496)
.+++..+..... ...++..+...|.+.|++++|+..|++..+... .+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888877542111 134677788888889999999998888775311 111 2256666777777899999999
Q ss_pred HHHHHHHhhhcCCCCCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 010994 399 CMKAALSVYVEGKGWKPD--PKVITSILSKLGDEGSVQDVEAF 439 (496)
Q Consensus 399 ~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 439 (496)
.|++++ .. ...... ......++.++ ..|+.+.+..+
T Consensus 217 ~~~~al-~~---p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SI---PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TS---TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CC---CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 998875 11 122112 12344555555 46777666663
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=3.3e-08 Score=96.79 Aligned_cols=165 Identities=12% Similarity=-0.013 Sum_probs=124.8
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 010994 214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR 293 (496)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 293 (496)
.|++++|.+.+++.. +... .+...+..+...|...|++++|.+.|++..+..+ .+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAV-RHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999987 5543 5678899999999999999999999999988653 567889999999999999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---CchhHHHHHHHHHHh
Q 010994 294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN---GLVQNAEAILEDLVE 370 (496)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 370 (496)
.++......+ .+...+..+..++.+.|++++|...+++..+... .+...+..+...+... |+.++|...+++..+
T Consensus 79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998888765 5678899999999999999999999999998743 3567788899999999 999999999999998
Q ss_pred cCCCCCHhHHHHHH
Q 010994 371 KGKATTPNSWAVVA 384 (496)
Q Consensus 371 ~~~~p~~~~~~~l~ 384 (496)
.+.. +...|..+.
T Consensus 157 ~~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVG-AVEPFAFLS 169 (568)
T ss_dssp HTCC-CSCHHHHTT
T ss_pred cCCc-ccChHHHhC
Confidence 7654 344444443
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.85 E-value=1.1e-07 Score=72.22 Aligned_cols=108 Identities=11% Similarity=-0.023 Sum_probs=71.2
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITS 422 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ 422 (496)
.+......|.+.|++++|+..|++.++.++. +...|..+..+|...|++++|+..++++++ +.| +...|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~a~~~ 86 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR-------LDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH-------hhhhhhHHHHH
Confidence 3445566666777777777777776665544 566677777777777777777777777766 233 3556666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIK 459 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 459 (496)
+..++...|++++|.+.|++..+..|.+...+..|..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6677777777777777777666666666666655544
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=1e-06 Score=78.11 Aligned_cols=168 Identities=11% Similarity=-0.028 Sum_probs=109.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC-CCch----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----ccHHH
Q 010994 278 LISLYASLGNKSEVLRLWDLEKTACKR-YINR----DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT-----RIPNA 347 (496)
Q Consensus 278 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 347 (496)
.+..+...|++++|..+++........ ++.. .+..+...+...|++++|...++++.+.....+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355667777888888777766654321 1111 2223555566667888888888888764322221 25777
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhc-----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH
Q 010994 348 VIIGYCNNGLVQNAEAILEDLVEK-----GKAT-TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT 421 (496)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (496)
+...|...|++++|...|+++.+. +..+ ...+|..+...|...|++++|+..++++++..........-...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887631 1111 1236778888888899999999888888873322212222256777
Q ss_pred HHHHHHhccCC-HHHHHHHHHHHHh
Q 010994 422 SILSKLGDEGS-VQDVEAFVAALRT 445 (496)
Q Consensus 422 ~l~~~~~~~g~-~~~a~~~~~~~~~ 445 (496)
.+..++.+.|+ +++|...+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888884 5888888876543
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=5.3e-07 Score=79.92 Aligned_cols=62 Identities=5% Similarity=-0.132 Sum_probs=32.9
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCCC-HhHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEK----GKATT-PNSWAVVAAGYFDAGK-TERGFQCMKAALS 405 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 405 (496)
++..+...|.+.|++++|...+++..+. +..+. ..+|..+...|...|+ +++|.+.+++++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4445555555555555555555554421 11111 3456666666666663 4666666666655
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=1.9e-07 Score=78.28 Aligned_cols=174 Identities=9% Similarity=0.027 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC----CHHHHHHHH
Q 010994 255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG----EHEEAEKVL 330 (496)
Q Consensus 255 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 330 (496)
+|.+.|++..+. -+...+..+...|...+++++|+..|+.....+ +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 456667666654 356677777777777888888888888766542 45566666666666 5 788888888
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHh----cCchhHHHHHHHHHHhcCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHH
Q 010994 331 KEWELSGNSYDTRIPNAVIIGYCN----NGLVQNAEAILEDLVEKGKA-TTPNSWAVVAAGYFD----AGKTERGFQCMK 401 (496)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 401 (496)
++..+.| +...+..+...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .++.++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877654 45566667767766 67788888888877776521 026777788888887 777888888888
Q ss_pred HHHHhhhcCCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHHHh
Q 010994 402 AALSVYVEGKGWKPDPKVITSILSKLGDE-G-----SVQDVEAFVAALRT 445 (496)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~ 445 (496)
++.+ . ..+...+..|...|... | +.++|...|+...+
T Consensus 154 ~A~~-----~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 154 GSSS-----L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHH-----T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHH-----c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 8876 2 33444555566555432 2 77777777776655
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=2.8e-07 Score=69.48 Aligned_cols=115 Identities=11% Similarity=0.155 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
..+..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.. ..+.+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~ 82 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LDPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hCCccHHHHHH
Confidence 45556666677777777777777777665432 556677777777777777777777777766 22335566667
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRN 464 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 464 (496)
+...+...|++++|...++.+....|.+...+..+...+...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 777777777777777777777666666666666666665543
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=1.8e-06 Score=76.76 Aligned_cols=174 Identities=14% Similarity=0.064 Sum_probs=110.6
Q ss_pred HhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc-CHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhc-C-CHH
Q 010994 73 RKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH-GFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQ-R-QTD 148 (496)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~-g-~~~ 148 (496)
.+.+..++|+++++.++..++ -........-.++...+ .+++++.+++.+....| +..+|+.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 334455688888888888652 23333444455555666 48888888888887776 577777766666665 6 778
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC--------cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC----
Q 010994 149 KALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE--------KVPDVLTEMKAKNIFPDNFSYRICINSYGARSD---- 216 (496)
Q Consensus 149 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---- 216 (496)
+++.+++.+.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence 888888888776544 7777776666666666666 67777777776543 255666666666666554
Q ss_pred ---hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 010994 217 ---LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL 252 (496)
Q Consensus 217 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 252 (496)
++++++.+++.. ..++ -|...|+.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI-~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSI-HLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHhcCC
Confidence 456666666655 3333 455666555555554443
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=2.4e-07 Score=70.21 Aligned_cols=111 Identities=9% Similarity=-0.027 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994 378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF 457 (496)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 457 (496)
..+......|.+.|++++|++.|+++++ -.+.+...+..+..++.+.|++++|...+++..+..|.+...|..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK------RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4677889999999999999999999998 2334678899999999999999999999999998889999999999
Q ss_pred HHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhhhcC
Q 010994 458 IKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTMEK 496 (496)
Q Consensus 458 ~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~k 496 (496)
+.+|...| ++|++.|++..+ +.|+......-+..|.|
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~lr 126 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNCLR 126 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHhcC
Confidence 99999999 899999999988 56887765555554443
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2.6e-06 Score=75.43 Aligned_cols=170 Identities=11% Similarity=-0.016 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cc
Q 010994 274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN-----RDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YD----TR 343 (496)
Q Consensus 274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 343 (496)
.+...+..+...|++++|.+.+............ ..+..+...+...|++++|...+++..+.... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556666777777777777655554331111 11333455566677788888877777643211 11 23
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHh---cCCC-C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVE---KGKA-T--TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD- 416 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~- 416 (496)
+++.+...|...|++++|...|++..+ .... + ...++..+...|...|++++|+..+++++..... .+....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~-~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCcHHHH
Confidence 667777778888888888888877762 2111 1 1147777888888888888888888888763211 111111
Q ss_pred HHHHHHHHHHHhccCCHHHH-HHHHHHHH
Q 010994 417 PKVITSILSKLGDEGSVQDV-EAFVAALR 444 (496)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 444 (496)
..++..+..++.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45677777788888888888 66666544
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=3.8e-06 Score=74.73 Aligned_cols=228 Identities=9% Similarity=-0.002 Sum_probs=149.5
Q ss_pred cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-C-CHHHH
Q 010994 250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG-NKSEVLRLWDLEKTACKRYINRDYITMLEALMKL-G-EHEEA 326 (496)
Q Consensus 250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a 326 (496)
.+..++|+++++++....+ .+..+|+.--..+...| .+++++.+++.+....+ .+...|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence 3444567777777776543 44556666666666666 47778888777766555 4555666555555555 5 67778
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh--------HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC------
Q 010994 327 EKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ--------NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK------ 392 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------ 392 (496)
..+++.+.+... -|...|+--.-.+.+.|.++ ++++.++++++.++. |...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 888887776542 25556655555555555555 889999999988777 88899988888888776
Q ss_pred -hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCH--------------------HHHHHHHHHHHhcC----
Q 010994 393 -TERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV--------------------QDVEAFVAALRTVI---- 447 (496)
Q Consensus 393 -~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~---- 447 (496)
++++++++++++. -.+-|...|+.+-..+.+.|+. .....+...+....
T Consensus 223 ~~~eELe~~~~aI~------~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 223 SLQDELIYILKSIH------LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp HHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred HHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 6889999999887 2334566776666666555543 22333333332222
Q ss_pred --CCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHH
Q 010994 448 --PMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKE 488 (496)
Q Consensus 448 --~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~ 488 (496)
.+++..+..|++.|...| ++|.++++.+.+. ..|=..-|.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw 340 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW 340 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence 467788999999999888 7899999998643 445444433
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=5e-07 Score=75.77 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF 388 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 388 (496)
.+..+...+...|++++|...+++.. .|+...+..+...|...|++++|...|++..+.... +...|..+...|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 35567788889999999999998773 567788999999999999999999999999987644 7788999999999
Q ss_pred hcCChHHHHHHHHHHHHhhhcCCC----------CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 010994 389 DAGKTERGFQCMKAALSVYVEGKG----------WKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449 (496)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~----------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 449 (496)
..|++++|+..|+++++..- +.. ..| ....+..+..++...|++++|...|+......|.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999997110 000 111 1267888889999999999999999988875543
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=1.1e-06 Score=73.56 Aligned_cols=92 Identities=9% Similarity=-0.033 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHh
Q 010994 205 RICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYAS 284 (496)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 284 (496)
..+...+...|++++|...|++.. .|+...+..+..+|...|++++|...|++.....+ .+...|..+..++..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 344445555566666665555553 23445555555555555666666555555554332 334455555555555
Q ss_pred cCCHHHHHHHHHHHHhhc
Q 010994 285 LGNKSEVLRLWDLEKTAC 302 (496)
Q Consensus 285 ~~~~~~a~~~~~~~~~~~ 302 (496)
.|++++|+..|+......
T Consensus 84 ~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC
Confidence 555555555555554443
No 127
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.73 E-value=1.1e-05 Score=71.36 Aligned_cols=197 Identities=10% Similarity=-0.031 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhcccCccchHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC-HHHHHHHH
Q 010994 254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLG--NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE-HEEAEKVL 330 (496)
Q Consensus 254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 330 (496)
++++.+++.+....+ .+..+|+.-...+...+ .+++++.+++.+....+ -+...|+--...+...|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 444444444444332 34444444444444444 24555555555544443 334444444444444444 35555555
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhc--------------CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc------
Q 010994 331 KEWELSGNSYDTRIPNAVIIGYCNN--------------GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA------ 390 (496)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 390 (496)
+.+.+..+. |...|+.....+.+. +.++++++.+.+.....+. |...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 555544322 334444333333322 4577888888888877665 777777665555554
Q ss_pred -----CChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHH---HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010994 391 -----GKTERGFQCMKAALSVYVEGKGWKPDPK-VITS---ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKAN 461 (496)
Q Consensus 391 -----~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 461 (496)
+.++++++.++++++ ..|+.. .+.. +..+....|..+++...+.++.+..|....-|.-+...+
T Consensus 247 ~~~~~~~l~~el~~~~elle-------~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE-------LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh-------hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 457889999999987 556542 2222 222233467778888889888887777777776665544
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=1.3e-07 Score=73.96 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF 388 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 388 (496)
.+..+...+.+.|++++|...|+.+.+..+ .+...|..+..+|...|++++|...|++..+.++. ++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 344455555555555555555555555431 24445555555555556666666666555554433 4455555555666
Q ss_pred hcCChHHHHHHHHHHHH
Q 010994 389 DAGKTERGFQCMKAALS 405 (496)
Q Consensus 389 ~~~~~~~a~~~~~~~~~ 405 (496)
..|++++|+..|+++++
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=1.1e-07 Score=83.57 Aligned_cols=194 Identities=9% Similarity=-0.015 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994 236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE 315 (496)
Q Consensus 236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 315 (496)
+...+..+...+...|++++|...|++.....+ .+...|..+..+|...|++++|...++......+ .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 455666677777888888888888887776543 4566777788888888888888888887766544 45567777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 395 (496)
++...|++++|...+....+.... +...+...+....+. ..+.. +..........+......+. .+ ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLT-RL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHHHHHH
Confidence 888888888888888877764321 111222222222211 11111 12222232333444433332 22 2678888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHHHH-HHHHHHHhcc-CCHHHHHHHHHHHHh
Q 010994 396 GFQCMKAALSVYVEGKGWKPDPKVI-TSILSKLGDE-GSVQDVEAFVAALRT 445 (496)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~ 445 (496)
|++.++++++ ..|+.... ..+...+.+. +.+++|.++|+...+
T Consensus 154 A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHE-------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGT-------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhc-------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888765 45655433 3333333333 667888888886654
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=2.9e-07 Score=70.48 Aligned_cols=116 Identities=7% Similarity=-0.045 Sum_probs=73.8
Q ss_pred cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH
Q 010994 342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT 421 (496)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (496)
...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|+..++++++ -.+.+...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~ 88 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQ------LEPTFIKGYT 88 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH------HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------hCCCchHHHH
Confidence 344555666666677777777777776665433 556666677777777777777777777765 1223455666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 010994 422 SILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRN 464 (496)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 464 (496)
.+..++...|++++|.+.+++.....|.+...+..+..++.+.
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 6666777777777777777766665555556666666555543
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=1.7e-06 Score=76.70 Aligned_cols=167 Identities=5% Similarity=-0.129 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-C----ch
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKD-----GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY-I----NR 308 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~ 308 (496)
.+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..++......... + ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566777888888888888877665432211 1223445566777889999999888776543211 1 24
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC-----cccHHHHHHHHHhcCchhHHHHHHHHHHhcC----CCC-CH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSG-NSYD-----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKG----KAT-TP 377 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~ 377 (496)
+++.+...|...|++++|...+++..+.. ..|+ ..++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67788888999999999999998887320 0122 2577888889999999999999999876532 111 15
Q ss_pred hHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 010994 378 NSWAVVAAGYFDAGKTERG-FQCMKAALS 405 (496)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 405 (496)
.+|..+...|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 788888876
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=4.4e-07 Score=75.40 Aligned_cols=61 Identities=11% Similarity=-0.074 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCC-CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGK-ATT----PNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.+++++.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444445555555555555554432100 001 12345555666666666666666666554
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=7.1e-07 Score=71.32 Aligned_cols=128 Identities=15% Similarity=0.048 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY 387 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 387 (496)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.... +...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345556666667777777777777766653 224555666666666777777777777776665433 556666666677
Q ss_pred HhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHH--HHHHHHhccCCHHHHHHHHHHHH
Q 010994 388 FDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVIT--SILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
...|++++|...+++++. ..| +...+. .....+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~-------~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVK-------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777777665 222 333332 22333555666666666666543
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=6.3e-07 Score=68.19 Aligned_cols=116 Identities=13% Similarity=-0.010 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++++. ..+.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~ 85 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAIC------IDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHh------cCccCHHHHHH
Confidence 34555566666667777777777766665432 556666677777777777777777777765 12234556666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
+...+...|++++|...++......|.+...+..+..++.+.|
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 6667777777777777777666656666666666666665544
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.68 E-value=1.7e-07 Score=76.08 Aligned_cols=125 Identities=9% Similarity=-0.007 Sum_probs=85.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH-HHhcCCh--H
Q 010994 318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG-YFDAGKT--E 394 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~--~ 394 (496)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.++. +...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45677777887777777653 235567777777788888888888888887766543 56677777777 6677777 8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994 395 RGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN 450 (496)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 450 (496)
+|...+++++. ..+.+...+..+...+...|++++|...++.+....|.+
T Consensus 99 ~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALA------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 88888888776 122345667777777778888888888888777655544
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.67 E-value=1.8e-07 Score=77.73 Aligned_cols=161 Identities=10% Similarity=-0.039 Sum_probs=101.3
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCcccHHHHHHHHHhcCch
Q 010994 284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS----GN-SYDTRIPNAVIIGYCNNGLV 358 (496)
Q Consensus 284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 358 (496)
..|++++|.++++.... .+......+..+...+...|++++|...+++..+. +. .....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45566666664432222 22223345566666666667777766666665541 11 11234566777788888888
Q ss_pred hHHHHHHHHHHhc---CC-CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994 359 QNAEAILEDLVEK---GK-AT--TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS 432 (496)
Q Consensus 359 ~~a~~~~~~~~~~---~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 432 (496)
++|...+++..+. .. .| ....+..+...+...|++++|...+++++...........-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888876653 11 11 234678888999999999999999999986321111111112346778888999999
Q ss_pred HHHHHHHHHHHHh
Q 010994 433 VQDVEAFVAALRT 445 (496)
Q Consensus 433 ~~~a~~~~~~~~~ 445 (496)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987655
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=9e-07 Score=70.71 Aligned_cols=129 Identities=9% Similarity=-0.125 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994 274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC 353 (496)
Q Consensus 274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (496)
.+..+...+...|++++|...|+......+ .+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344555555556666666666665555433 344555556666666666666666666665543 224455666666666
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCHhHHHHH--HHHHHhcCChHHHHHHHHHHHH
Q 010994 354 NNGLVQNAEAILEDLVEKGKATTPNSWAVV--AAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..|++++|...|++..+..+. +...+..+ +..+...|++++|+..+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 677777777777766665433 34444333 3335566777777777766554
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.5e-07 Score=82.73 Aligned_cols=193 Identities=9% Similarity=-0.072 Sum_probs=82.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994 202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL 281 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 281 (496)
..+..+...+.+.|++++|...|++.. .... .+...|..+..+|.+.|++++|...+++..+..+ .+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAI-TRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 334444444555555555555555444 2221 2444445555555555555555555555444322 233445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA 361 (496)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (496)
+...|++++|...|+......+ .+...+...+....+. ..+... ..........+......+. .+ ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLT-RL-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHH-HH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHH-HH-HHHHHHHH
Confidence 5555555555555554444332 1111111111111110 111111 1111222222333322222 22 25677777
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010994 362 EAILEDLVEKGKATTPNSWAVVAAGYFDA-GKTERGFQCMKAALS 405 (496)
Q Consensus 362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 405 (496)
.+.++...+.++. +......+...+.+. +.+++|.++|.++.+
T Consensus 155 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777666654321 223333333333333 556677777776654
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=3.7e-07 Score=78.44 Aligned_cols=201 Identities=7% Similarity=-0.075 Sum_probs=133.4
Q ss_pred hcCChHHHHHHHHHHHHhcccCccchHHHH-------HHHHHhcCCHHHHHHHHHHHHhhcC-----CCC----------
Q 010994 249 KANLIDKASDVLKKAEERLEQKDGIGYNFL-------ISLYASLGNKSEVLRLWDLEKTACK-----RYI---------- 306 (496)
Q Consensus 249 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~---------- 306 (496)
..++...|.+.|.+.....+ -....|..+ ...+...++..+++..+.......+ ..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 46777777777777766543 445566666 4555555555555555553333111 000
Q ss_pred -----chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC--HhH
Q 010994 307 -----NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT--PNS 379 (496)
Q Consensus 307 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~ 379 (496)
..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1123345677788899999999998887654 333255566667888999999999998554431 111 236
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994 380 WAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD--PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF 457 (496)
Q Consensus 380 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 457 (496)
+..+..++...|++++|+..|+++.. ....|. .........++.+.|+.++|...|+++....|. ...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 77888899999999999999999875 222254 345666777888999999999999988886655 6666655
Q ss_pred HH
Q 010994 458 IK 459 (496)
Q Consensus 458 ~~ 459 (496)
.+
T Consensus 248 ~~ 249 (282)
T 4f3v_A 248 KD 249 (282)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=4.9e-07 Score=70.72 Aligned_cols=99 Identities=10% Similarity=-0.060 Sum_probs=74.9
Q ss_pred cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHH
Q 010994 342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVI 420 (496)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~ 420 (496)
...+..+...+.+.|++++|...|+++.+.++. +...|..+..+|...|++++|+..|+++++ +.| +...+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~-------l~P~~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA-------LGKNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSSSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh-------hCCCCcHHH
Confidence 345666777778888888888888888877655 677788888888888888888888888876 344 45677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 421 TSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
..+..++...|++++|...|++.....|
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7777888888888888888887776543
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=2.2e-07 Score=72.76 Aligned_cols=99 Identities=10% Similarity=0.100 Sum_probs=61.5
Q ss_pred cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHH
Q 010994 342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVI 420 (496)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~ 420 (496)
...+..+...+.+.|++++|...|++....++. +...|..+..+|...|++++|+..|++++. +.| +...+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAV-------MDIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSTTCTHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCCchHH
Confidence 334455556666666777777776666665443 566666666666677777777777776665 223 34556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 421 TSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
..+..++...|++++|...|+......|
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 6666666666777777776666555433
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=2.8e-07 Score=74.81 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=71.4
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCch--hH
Q 010994 284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG-YCNNGLV--QN 360 (496)
Q Consensus 284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 360 (496)
..|++++|...++......+ .+...+..+...|...|++++|...++...+... .+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 34555556666655554443 3445556666666666666666666666655432 234455555555 5566776 77
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
|...++++.+.++. +...+..+...|...|++++|...|++++.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777765443 566677777777777777777777777776
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=1.6e-06 Score=64.45 Aligned_cols=110 Identities=8% Similarity=-0.054 Sum_probs=68.8
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI 423 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 423 (496)
.+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...+++++. ..+.+...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~ 78 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD------LKPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHH------hCcccHHHHHHH
Confidence 4455556666667777777777666665433 556666666677777777777777777665 122245566666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994 424 LSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA 460 (496)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 460 (496)
..++...|++++|...++...+..|.+...+..+...
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6667777777777777776666555565555554443
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=9.6e-08 Score=74.85 Aligned_cols=107 Identities=10% Similarity=-0.037 Sum_probs=90.5
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010994 364 ILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL 443 (496)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 443 (496)
.|+++.+..+. +...+..+...+...|++++|+..|++++. .-+.+...+..+..++...|++++|...|++.
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCV------LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHH------cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555544322 456778888999999999999999999987 23346778889999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 444 RTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 444 ~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
....|.++..|..+..+|...| ++|...|++..+
T Consensus 82 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 82 AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9888899999999999999999 899999999876
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1.5e-06 Score=65.38 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 010994 275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN 354 (496)
Q Consensus 275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (496)
|..+...+...|++++|.+.++.+....+ .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 33333444444444444444443333322 223333444444444444444444444444332 1123334444444455
Q ss_pred cCchhHHHHHHHHHHhc
Q 010994 355 NGLVQNAEAILEDLVEK 371 (496)
Q Consensus 355 ~g~~~~a~~~~~~~~~~ 371 (496)
.|++++|...++++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=3.3e-07 Score=78.69 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=85.3
Q ss_pred hhcCHHHHHHHHHhchhcCCC-HHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---------------
Q 010994 110 RVHGFLSAESYFSNLKDDEKT-YQTYGAL-------LNCYVRQRQTDKALSHFRKMKEMGIALST--------------- 166 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 166 (496)
..++...|.+.|.++...+|+ ...|..+ ...+.+.++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 457777777777777777774 7777766 4555555555555444443322 22221
Q ss_pred -------hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCC--CH
Q 010994 167 -------LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVL--DW 237 (496)
Q Consensus 167 -------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 237 (496)
..+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+... ... .| ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHH
Confidence 111223344444555555555554444322 222233333334445555555555554333 111 01 01
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994 238 STYASAAHFYIKANLIDKASDVLKKAEERLEQK--DGIGYNFLISLYASLGNKSEVLRLWDLEKTA 301 (496)
Q Consensus 238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 301 (496)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+.+...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 233444445555555555555555444211102 1223334444444555555555555544443
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.7e-06 Score=65.55 Aligned_cols=94 Identities=11% Similarity=0.001 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSI 423 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l 423 (496)
+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..++++++ +.| +...+..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l 78 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE-------KDPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCcHHHHHHH
Confidence 344445555556666666666655554433 455555666666666666666666666655 222 34455555
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 010994 424 LSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
..++...|++++|...|++....
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 55566666666666666555443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=1.8e-06 Score=65.91 Aligned_cols=95 Identities=20% Similarity=0.040 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010994 167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHF 246 (496)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 246 (496)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++.. .... .+...+..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI-QLEP-TFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CchHHHHHHHHH
Confidence 334444444444444444444444444331 1133334444444444444444444444443 2211 233344444444
Q ss_pred HHhcCChHHHHHHHHHHH
Q 010994 247 YIKANLIDKASDVLKKAE 264 (496)
Q Consensus 247 ~~~~~~~~~a~~~~~~m~ 264 (496)
+...|++++|...|++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=1.2e-06 Score=66.64 Aligned_cols=117 Identities=8% Similarity=-0.087 Sum_probs=57.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994 273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY 352 (496)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (496)
..+..+...+...|++++|...++......+ .+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 3444444455555555555555554444332 233444445555555555555555555555432 11334445555555
Q ss_pred HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994 353 CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK 392 (496)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 392 (496)
...|++++|...|++..+..+. +...+..+...+...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 5555555555555555554332 44445555555544443
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=2.1e-06 Score=63.15 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=78.7
Q ss_pred CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC--CHH
Q 010994 341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP--DPK 418 (496)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p--~~~ 418 (496)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|+..++++++ ..+. +..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~ 77 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVIN------VIEDEYNKD 77 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TSCCTTCHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCcccchHH
Confidence 4556677777788888888888888888776544 667788888888888888888888888887 2222 467
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCC
Q 010994 419 VITSILSKLGDE-GSVQDVEAFVAALRTVIPMN 450 (496)
Q Consensus 419 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~ 450 (496)
.+..+..++... |++++|.+.++......|.+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 778888888888 88888888888877765543
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=2.1e-06 Score=77.55 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=68.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 010994 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHA 456 (496)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 456 (496)
...|..+..+|.+.|++++|+..++++++ -.+.+...+..+..++...|++++|...|++.....|.+...+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 269 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALE------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45777788888888888888888888876 123356677777788888888888888888777777777788888
Q ss_pred HHHHHHhCC--CcH-HHHHHHH
Q 010994 457 FIKANIRNG--KGV-DELLDSM 475 (496)
Q Consensus 457 l~~~~~~~g--~~a-~~~~~~m 475 (496)
+..++.+.| ++| ...++.|
T Consensus 270 l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 270 LAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777 344 3444444
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=4.9e-05 Score=67.27 Aligned_cols=219 Identities=11% Similarity=0.006 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHhcccCccchHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC--C
Q 010994 255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGN----------KSEVLRLWDLEKTACKRYINRDYITMLEALMKLG--E 322 (496)
Q Consensus 255 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 322 (496)
+|+.+++.+....+ .+..+|+.--..+...+. +++++.+++.+....+ -+..+|+.-...+.+.+ .
T Consensus 48 eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCccc
Confidence 56666666655432 233334443333322222 5788888988887766 66677877777777777 4
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc-hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-----------
Q 010994 323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL-VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA----------- 390 (496)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------- 390 (496)
++++..+++.+.+.... |...|+.-...+...|. +++++..++++++.++. |...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence 89999999999987533 77777777777778888 59999999999998877 888998887777665
Q ss_pred ---CChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994 391 ---GKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDE-----------GSVQDVEAFVAALRTVIPMNRQMYH 455 (496)
Q Consensus 391 ---~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~ 455 (496)
+.++++++++.+++. ..| |...|+.+-..+.+. +.++++.+.++++.+..|.+.-++.
T Consensus 204 ~~~~~~~eEle~~~~ai~-------~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 204 LPENVLLKELELVQNAFF-------TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp CCHHHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 457899999999997 445 566776555555544 4578899999988887777654444
Q ss_pred HHHHHHH---hCC--CcHHHHHHHHHhCCCCCChhH
Q 010994 456 AFIKANI---RNG--KGVDELLDSMKADGIDEDEET 486 (496)
Q Consensus 456 ~l~~~~~---~~g--~~a~~~~~~m~~~g~~p~~~t 486 (496)
.++.... ..| +++...+.++.+ +.|...-
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 4432221 233 577888888887 5565543
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=2.3e-06 Score=77.37 Aligned_cols=147 Identities=10% Similarity=-0.042 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994 236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE 315 (496)
Q Consensus 236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 315 (496)
+...+..+...|.+.|++++|...|++.....+..... ..+.+..+-. .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHHH--------HHHHHHHHHHH
Confidence 34556666666777777777777777665543321100 0000000000 01245555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER 395 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 395 (496)
++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666553 224555666666666667777777777666665443 55566666666666666666
Q ss_pred H-HHHHHHHHH
Q 010994 396 G-FQCMKAALS 405 (496)
Q Consensus 396 a-~~~~~~~~~ 405 (496)
| ...|++|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6 345555543
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=1.8e-06 Score=67.00 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL 424 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 424 (496)
+..+...+.+.|++++|...|++....++. +...|..+..+|...|++++|+..|++++. -.+.+...+..+.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg 93 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGAL------MDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCcHHHHHHH
Confidence 334445555566666666666666555433 555555666666666666666666666655 1122334555555
Q ss_pred HHHhccCCHHHHHHHHHHHHhc
Q 010994 425 SKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
.++...|++++|...|+.....
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5566666666666666655443
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.2e-05 Score=73.77 Aligned_cols=166 Identities=7% Similarity=0.027 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhccc-Ccc----chHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CC-Cchh
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEERLEQ-KDG----IGYNFLISLYASLGNKSEVLRLWDLEKTACK----RY-INRD 309 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~ 309 (496)
+..+...|...|++++|.+.+..+...... ++. .+.+.+...+...|+.+.+..+++....... .+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455667777777777777777765443211 111 1223333344456677777777765443221 11 1245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCchhHHHHHHHHHHhc--CC-CC-C--Hh
Q 010994 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYD-----TRIPNAVIIGYCNNGLVQNAEAILEDLVEK--GK-AT-T--PN 378 (496)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~p-~--~~ 378 (496)
+..+...+...|++++|..+++.+...-...+ ..++..++..|...|++++|..++++.... .. .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 56677777777888888777777654311111 235667777777888888888887776532 11 11 1 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+..+...+...|++++|...|.++..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666677777888888888877766
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=1.9e-06 Score=65.29 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHHH
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVIT 421 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~ 421 (496)
..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|++.++++++.. ....++ ..++.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVG---RETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC---cccchhhHHHHHHHH
Confidence 34455555555555555555555554433 45555555555555666666655555555411 001111 12344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH
Q 010994 422 SILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
.+..++...|++++|.+.|++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555443
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=2.7e-06 Score=64.45 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=69.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--CC----HhHHHH
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA--TT----PNSWAV 382 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~----~~~~~~ 382 (496)
.+..+...+.+.|++++|...|++..+..+ .+...|..+..+|.+.|++++|+..+++.++.++. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344556666666666666666666666532 24555666666777777777777777766543211 11 235777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994 383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI 423 (496)
Q Consensus 383 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 423 (496)
+...+...|++++|++.|++++. ..||..+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~-------~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS-------EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-------HSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-------hCcCHHHHHHH
Confidence 78888899999999999999887 45776655443
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.8e-06 Score=62.96 Aligned_cols=96 Identities=13% Similarity=0.010 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY 387 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 387 (496)
..+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.++. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345556666777777777777777777653 225566777777777888888888888887776544 567777788888
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010994 388 FDAGKTERGFQCMKAALS 405 (496)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~ 405 (496)
...|++++|...|+++++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 888888888888888776
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=2.7e-06 Score=67.86 Aligned_cols=94 Identities=13% Similarity=-0.005 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSI 423 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l 423 (496)
+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..|+++++ +.| +...+..+
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l 85 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV-------VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHHHHHHH
Confidence 344444444555555555555555444322 444455555555555555555555555554 122 23444455
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 010994 424 LSKLGDEGSVQDVEAFVAALRTV 446 (496)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~~~~~ 446 (496)
..++...|++++|...|++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555544443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=6.2e-06 Score=64.24 Aligned_cols=111 Identities=13% Similarity=-0.028 Sum_probs=69.0
Q ss_pred cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994 342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP 417 (496)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~ 417 (496)
...+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|+..+++++. -.+.+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~ 99 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE------KDGGDV 99 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HTSCCH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh------hCccCH
Confidence 3345555666666666666666666666543 33 45666666677777777777777777665 122245
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA 460 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 460 (496)
..+..+..++...|++++|...|++.....|.+...+..+...
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 5666666667777777777777776666555566555554443
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=4.2e-06 Score=69.15 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994 378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF 457 (496)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 457 (496)
..|..+..+|...|++++|+..+++++. -.+.+...+..+..++...|++++|...|+......|.+...+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK------IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 6788888999999999999999999987 2334667888889999999999999999998888888888999999
Q ss_pred HHHHHhCC--CcHH-HHHHHHHhCC
Q 010994 458 IKANIRNG--KGVD-ELLDSMKADG 479 (496)
Q Consensus 458 ~~~~~~~g--~~a~-~~~~~m~~~g 479 (496)
..++...+ +++. ..+..|...|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 163 ELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888877 3333 5566665544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=4.9e-06 Score=63.91 Aligned_cols=95 Identities=11% Similarity=-0.074 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS 422 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 422 (496)
..+..+...+...|++++|...|++..+..+. +...|..+...+...|++++|+..+++++. -.+.+...+..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~ 82 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE------LDGQSVKAHFF 82 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCchhHHHHHH
Confidence 33444444445555555555555554444322 344455555555555555555555555544 11123344444
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 010994 423 ILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
+..++...|++++|...|+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 4455555555555555555443
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=5.2e-07 Score=74.72 Aligned_cols=87 Identities=11% Similarity=0.027 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVIT 421 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~ 421 (496)
..+..+..+|...|++++|...+++..+.... +...+..+..+|...|++++|+..|+++++ +.| +...+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~ 160 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS-------LNPNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------HCCCcHHHHH
Confidence 56677777888888888888888888876543 677888888888888888888888888887 334 455666
Q ss_pred HHHHHHhccCCHHHHH
Q 010994 422 SILSKLGDEGSVQDVE 437 (496)
Q Consensus 422 ~l~~~~~~~g~~~~a~ 437 (496)
.+..++...++.+++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666655
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=3.8e-06 Score=65.12 Aligned_cols=97 Identities=15% Similarity=0.012 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994 238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 317 (496)
Q Consensus 238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (496)
..+..+...+.+.|++++|...|++.....+ .+...|..+..++...|++++|+..|+......+ .+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 3344455555666666666666666555432 3445555566666666666666666665555544 3445555566666
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 010994 318 MKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~ 336 (496)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655544
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=6.2e-06 Score=61.16 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=89.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994 376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH 455 (496)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 455 (496)
+...+..+...+...|++++|...+++++. ..+.+...+..+...+...|++++|...++......|.+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence 456788889999999999999999999987 23346788888999999999999999999998888888899999
Q ss_pred HHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHH
Q 010994 456 AFIKANIRNG--KGVDELLDSMKADGIDEDEETKE 488 (496)
Q Consensus 456 ~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~ 488 (496)
.+..+|...| ++|.+.+++..+. .|+.....
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 109 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKH--EANNPQLK 109 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc--CCCCHHHH
Confidence 9999999999 7999999998874 46554433
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=7.1e-06 Score=60.19 Aligned_cols=94 Identities=5% Similarity=-0.068 Sum_probs=47.2
Q ss_pred hhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHH
Q 010994 101 HAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL--STLTYNDIMCLYS 177 (496)
Q Consensus 101 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~ 177 (496)
+..+...+...|++++|...|+++....| +...|..+...+...|++++|...|++..+.. +. +...|..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 33334444444555555555544444433 34455555555555555555555555555442 11 3444555555555
Q ss_pred hc-CCCCcHHHHHHHHHHC
Q 010994 178 KT-GQYEKVPDVLTEMKAK 195 (496)
Q Consensus 178 ~~-~~~~~a~~~~~~m~~~ 195 (496)
.. |++++|.+.+++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 55 5555555555555443
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.1e-05 Score=72.76 Aligned_cols=167 Identities=10% Similarity=-0.001 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCCh----hhHHHHHHHHhhcCChHHHHHHHHHhh----cCCCCCCCHHH
Q 010994 169 YNDIMCLYSKTGQYEKVPDVLTEMKAKN-IFPDN----FSYRICINSYGARSDLEGMEIILREME----SQPHIVLDWST 239 (496)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 239 (496)
+..+...|...|++++|.+.+..+...- ..++. .+.+.+-..+...|+.+.|..+++... ...+...-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455555566666666665555544321 01111 112223334445566777776665544 11122123455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCC-----ch
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEERLEQK-----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-RYI-----NR 308 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~ 308 (496)
+..+...|...|++++|..++++....-... ...++..++..|...|++++|..+++....... .++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6677788888888888888887765432211 124577777888888888888888876554322 111 13
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
.+..+...+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 355566666777888888877766654
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=6.1e-06 Score=61.85 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSI 423 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l 423 (496)
+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..|+++++ +.| +...+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM-------LDPKDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHH
Confidence 344455556666666666666666655433 555666666666666666666666666665 333 34455556
Q ss_pred HHHHhccCCHHHHHHHHHHHHh
Q 010994 424 LSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
..++...|++++|...+++..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665554
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=1e-05 Score=61.26 Aligned_cols=109 Identities=14% Similarity=0.040 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVI 420 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~ 420 (496)
+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++++... ....++ ...+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cccchhHHHHHHHH
Confidence 344455555555566666555555554322 44555555556666666666666666655511 001111 4455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010994 421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI 458 (496)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 458 (496)
..+..++...|++++|...++...+.. |+...+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 555555666666666666666555432 2444444443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=2.4e-05 Score=59.19 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=48.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHH
Q 010994 348 VIIGYCNNGLVQNAEAILEDLVEKGKATTP---NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVI 420 (496)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~ 420 (496)
+...+...|++++|...|+++.+..+. +. ..+..+...+...|++++|+..|++++. ..|+ ...+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~~ 79 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVS-------RYPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTSTTHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------HCCCCcccHHHH
Confidence 344445555555555555555544322 12 2444555555555555555555555554 1122 3344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 010994 421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQ 452 (496)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 452 (496)
..+..++...|++++|...|+.+....|.+..
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 45555555555566665555555554444433
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.5e-05 Score=61.96 Aligned_cols=107 Identities=7% Similarity=-0.051 Sum_probs=91.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994 376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR 451 (496)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 451 (496)
+...+..+...+...|++++|+..|+++++ ..|+ ...+..+...+...|++++|...++......|.+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG-------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT-------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence 567888999999999999999999999986 5676 57788888899999999999999999888888889
Q ss_pred HHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHH
Q 010994 452 QMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV 491 (496)
Q Consensus 452 ~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~ 491 (496)
..|..+..+|...| ++|...|++..+ +.|+.......+
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 139 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHH
Confidence 99999999999999 799999999887 456654443333
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=5.3e-06 Score=65.66 Aligned_cols=101 Identities=11% Similarity=0.020 Sum_probs=51.7
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DP 417 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~ 417 (496)
++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|.+.+++++..... .+..+ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~ 129 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-ccchHhHH
Confidence 3344444555555555555555554331100 01 234555666666677777777776666652211 11111 12
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
..+..+...+...|++++|.+.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666667777777776665543
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=6.4e-06 Score=61.75 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
+..+...+.+.|++++|...++...+... .+...|..+..++...|++++|+..|++..+.++. +...+..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44455556666666666666666665532 24555556666666666666666666666665443 55566666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 010994 390 AGKTERGFQCMKAALS 405 (496)
Q Consensus 390 ~~~~~~a~~~~~~~~~ 405 (496)
.|++++|+..++++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666654
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=9.6e-06 Score=61.44 Aligned_cols=59 Identities=15% Similarity=0.014 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEK 299 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 299 (496)
+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...++...
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444444444444444443321 233334444444444444444444444333
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=2.4e-05 Score=59.96 Aligned_cols=97 Identities=9% Similarity=-0.041 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 316 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (496)
...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|...++......+ .+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 44444444555555555555555555444322 2334444455555555555555555554444333 233444444445
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 010994 317 LMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~ 335 (496)
+...|++++|...+....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555544443
No 176
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=2.4e-05 Score=62.25 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994 238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 317 (496)
Q Consensus 238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (496)
..+..+...+...|++++|+..|++..+..+ .+...|..+..+|...|++++|+..|+......+ .+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3444455555555555555555555544332 2344455555555555555555555555544433 3344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 010994 318 MKLGEHEEAEKVLKEWELS 336 (496)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~ 336 (496)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=6.5e-06 Score=65.45 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=46.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR 451 (496)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 451 (496)
...|..+..+|.+.|++++|+..+++++. --+.+...+..+..++...|++++|...|+......|.+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~------~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLK------REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 34666677777777777777777777776 1223455666777777777777777777776666555555
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.22 E-value=4.5e-05 Score=57.65 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC---HhHHHHHHH
Q 010994 312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDT---RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT---PNSWAVVAA 385 (496)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 385 (496)
.+...+...|++++|...++.+.+.... +. ..+..+..++.+.|++++|...|+++.+..+. + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 3455566666677777666666654321 22 25555666666777777777777776665433 2 455666677
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010994 386 GYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~ 405 (496)
++...|++++|...|++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777765
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.21 E-value=1.9e-05 Score=62.38 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKD-----GIGYNFLISLYASLGNKSEVLRLWDLEKT 300 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 300 (496)
++..+...|...|++++|...+++..+...... ..++..+...+...|++++|...++....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555666666666666666666544321111 13455555566666666666666654443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=1.1e-05 Score=76.68 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=61.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE 394 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 394 (496)
..+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++..+..+. +...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34455566666666666665542 123455555666666666666666666666655433 4555666666666666666
Q ss_pred HHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHH--HhccCCHHHHHHHHHH
Q 010994 395 RGFQCMKAALSVYVEGKGWKPD-PKVITSILSK--LGDEGSVQDVEAFVAA 442 (496)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~~ 442 (496)
+|++.|+++++ ..|+ ...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVK-------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHH-------HSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 66666666655 1221 2223333323 4555555556555543
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=1.8e-05 Score=74.75 Aligned_cols=83 Identities=11% Similarity=0.045 Sum_probs=56.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 010994 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHA 456 (496)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 456 (496)
...|..+..+|.+.|++++|+..++++++ -.+.+...+..+..+|...|++++|...|++..+..|.+...+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 390 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALG------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35677777777777777777777777776 122345677777777777777777777777777766666777777
Q ss_pred HHHHHHhCC
Q 010994 457 FIKANIRNG 465 (496)
Q Consensus 457 l~~~~~~~g 465 (496)
+..++.+.+
T Consensus 391 l~~~~~~~~ 399 (457)
T 1kt0_A 391 ISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777766
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=0.00016 Score=69.95 Aligned_cols=170 Identities=9% Similarity=-0.097 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 010994 287 NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE----------HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG 356 (496)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (496)
..++|++.++.+....+ .+...|+.--.++...|+ ++++...++.+.+...+ +..+|+.-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 33556666666666554 344555555555555555 78888888888876533 6667777777777778
Q ss_pred --chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc---
Q 010994 357 --LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE--- 430 (496)
Q Consensus 357 --~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 430 (496)
++++++..++++.+.++. |...|+.-...+.+.| .++++++.+.++++ ...-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~------~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT------RNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT------TTCCCHHHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH------HCCCCccHHHHHHHHHHhhccc
Confidence 668899999999888777 8888888888888888 78888888888876 3334566777666655542
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994 431 -----------GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG 465 (496)
Q Consensus 431 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 465 (496)
+.++++.+.++......|.+...|+.+...+.+.+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 56788999888888778899999999888888776
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=2.6e-05 Score=73.96 Aligned_cols=119 Identities=17% Similarity=0.063 Sum_probs=62.7
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 010994 209 NSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK 288 (496)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (496)
..+.+.|++++|.+.+++.. +... .+..+|..+..+|.+.|++++|...+++..+..+ .+..+|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAI-ELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 34555666666666666655 3322 3455566666666666666666666666655432 3445555666666666666
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHH
Q 010994 289 SEVLRLWDLEKTACKRYINRDYITMLEA--LMKLGEHEEAEKVLK 331 (496)
Q Consensus 289 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 331 (496)
++|.+.|++.....+ .+...+..+..+ +.+.|++++|...++
T Consensus 91 ~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665555443 223333333333 555556666665555
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=0.00012 Score=70.93 Aligned_cols=170 Identities=8% Similarity=0.013 Sum_probs=100.7
Q ss_pred HHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC--CC
Q 010994 116 SAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ----------TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG--QY 182 (496)
Q Consensus 116 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~--~~ 182 (496)
+|+..++.+....| +..+|+.--.++.+.|+ ++++++.++.+.+...+ +..+|+.-..++.+.+ ++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccH
Confidence 34444444444444 34455544444444444 66666666666655433 5566666666666666 44
Q ss_pred CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-----------
Q 010994 183 EKVPDVLTEMKAKNIFPDNFSYRICINSYGARS-DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA----------- 250 (496)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------- 250 (496)
+++++.++++.+.... |..+|+.-.-++.+.| .++++++.++++. +.++ -+..+|+.....+.+.
T Consensus 126 ~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 126 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCC-CCccHHHHHHHHHHhhccccccccccc
Confidence 6666666666665322 4555555555555556 6677777777776 5554 5666666665555542
Q ss_pred ---CChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994 251 ---NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE 290 (496)
Q Consensus 251 ---~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (496)
+.++++.+.+++.....+ -|..+|.-....+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 456788888887776543 566778777777766666433
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=0.00012 Score=56.71 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=59.1
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhc-------CCCCCHhHH----HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEK-------GKATTPNSW----AVVAAGYFDAGKTERGFQCMKAALSVYVEGKG 412 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 412 (496)
.|..+..++.+.|++++|+..+++.++. ++. +...| .....++...|++++|+..|+++++..-++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6777777777888888888888777775 433 45677 88899999999999999999999885545566
Q ss_pred CCCCHHHHHHHH
Q 010994 413 WKPDPKVITSIL 424 (496)
Q Consensus 413 ~~p~~~~~~~l~ 424 (496)
+.+........+
T Consensus 138 ~~~~~~~~~~~~ 149 (159)
T 2hr2_A 138 ETPGKERMMEVA 149 (159)
T ss_dssp CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655444433
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=7.3e-05 Score=70.59 Aligned_cols=122 Identities=12% Similarity=-0.005 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc--------------cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 010994 238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKD--------------GIGYNFLISLYASLGNKSEVLRLWDLEKTACK 303 (496)
Q Consensus 238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 303 (496)
..+..+...|.+.|++++|...|++..+..+... ...|..+..+|.+.|++++|+..++......+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455566666666777777776666655432111 23444444555555555555555554444433
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994 304 RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA 361 (496)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (496)
.+...|..+..+|...|++++|...|+++.+... .+...+..+...+.+.++.+++
T Consensus 349 -~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 349 -ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555554444321 1233444444444444444433
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.08 E-value=1.3e-05 Score=59.57 Aligned_cols=90 Identities=9% Similarity=0.091 Sum_probs=47.7
Q ss_pred cCchhHHHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994 355 NGLVQNAEAILEDLVEKGK--ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS 432 (496)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 432 (496)
.|++++|+..|++..+.+. +-+...+..+...|...|++++|+..|+++++ -.+-+...+..+..++...|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------QFPNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHcCC
Confidence 4556666666666655421 11334555666666666666666666666665 112234555556666666666
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 010994 433 VQDVEAFVAALRTVIPMN 450 (496)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~ 450 (496)
+++|...+++.....|.+
T Consensus 77 ~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 77 YEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 666666666555543433
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=2.3e-05 Score=62.22 Aligned_cols=113 Identities=10% Similarity=0.014 Sum_probs=88.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhc--CCCC---------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVE--GKGW---------KP-DPKVITSILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
...+......+.+.|++++|+..|.+++..... .... .| +...+..+..++.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 346777888899999999999999999872100 0000 22 23578888889999999999999999998
Q ss_pred hcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChh-HHHHHH
Q 010994 445 TVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEE-TKEILV 491 (496)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~-t~~~l~ 491 (496)
...|.++..|..+..+|...| ++|...|++..+ +.|+.. .....+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l 138 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREM 138 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 888999999999999999999 899999999888 468766 544333
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.08 E-value=5e-06 Score=61.94 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994 320 LGEHEEAEKVLKEWELSG--NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF 397 (496)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 397 (496)
.|++++|...|++..+.+ .+.+...+..+...|...|++++|...|++..+..+. +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 567777777777777653 1224456677777788888888888888888776554 5677777888888888888888
Q ss_pred HHHHHHHH
Q 010994 398 QCMKAALS 405 (496)
Q Consensus 398 ~~~~~~~~ 405 (496)
..+++++.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888776
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=1.7e-05 Score=72.41 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH 455 (496)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 455 (496)
...|..+..+|.+.|++++|+..++++++ ..| +...+..+..++...|++++|...|++..+..|.+...+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~ 345 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALE-------IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44566666666777777777777777665 233 4556666666666777777777777766666666666666
Q ss_pred HHHHHHHhCC
Q 010994 456 AFIKANIRNG 465 (496)
Q Consensus 456 ~l~~~~~~~g 465 (496)
.+..++...+
T Consensus 346 ~l~~~~~~~~ 355 (370)
T 1ihg_A 346 ELLKVKQKIK 355 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=1.7e-05 Score=71.58 Aligned_cols=145 Identities=11% Similarity=0.029 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY 387 (496)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 387 (496)
..+..+...+.+.|++++|...|.+..+.. |+.. .+...|+.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 346666777777788888888888776652 2221 1223344444332221 13788899999
Q ss_pred HhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--
Q 010994 388 FDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-- 465 (496)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 465 (496)
.+.|++++|+..++++++ ..+.+...+..+..++...|++++|...|++.....|.+...+..+........
T Consensus 241 ~~~g~~~~A~~~~~~al~------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLT------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HTTTCCHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 223467889999999999999999999999988877777778877776644443
Q ss_pred -CcHHHHHHHHHh
Q 010994 466 -KGVDELLDSMKA 477 (496)
Q Consensus 466 -~~a~~~~~~m~~ 477 (496)
+.+..+|++|..
T Consensus 315 ~~~a~~~~~~~l~ 327 (338)
T 2if4_A 315 YQKQKEMYKGIFK 327 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhC
Confidence 677888888875
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=9.4e-05 Score=67.53 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEE 265 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 265 (496)
.+..+...+.+.|++++|+..|++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 355566677777777777777777654
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=7.8e-06 Score=60.03 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=33.1
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|+..++++++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444455555555555555555555554332 445555555555555555555555555554
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=0.00015 Score=50.64 Aligned_cols=84 Identities=12% Similarity=0.231 Sum_probs=69.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994 376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH 455 (496)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 455 (496)
+...+..+...+...|++++|+..+++++. ..+.+...+..+..++...|++++|...+++.....|.+...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 345778888889999999999999999987 22345678888888999999999999999988887888888888
Q ss_pred HHHHHHHhCC
Q 010994 456 AFIKANIRNG 465 (496)
Q Consensus 456 ~l~~~~~~~g 465 (496)
.+..++.+.|
T Consensus 82 ~l~~~~~~~g 91 (91)
T 1na3_A 82 NLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888877654
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.89 E-value=0.00027 Score=54.70 Aligned_cols=95 Identities=22% Similarity=0.055 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcccC------c-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhh-------
Q 010994 240 YASAAHFYIKANLIDKASDVLKKAEERLEQK------D-----GIGYNFLISLYASLGNKSEVLRLWDLEKTA------- 301 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 301 (496)
+......+.+.|++++|+..|++..+..+.. + ...|..+..++.+.|++++|+..++.....
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344555666666666666666665543320 1 125666666666666666666666655554
Q ss_pred cCCCCchhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 302 CKRYINRDY----ITMLEALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 302 ~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (496)
.+ .+...| .....++...|++++|...|++..+
T Consensus 94 ~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 32 233444 5555555556666666666555554
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.85 E-value=3.5e-05 Score=69.59 Aligned_cols=148 Identities=7% Similarity=0.021 Sum_probs=86.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994 272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351 (496)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (496)
...+..+...+.+.|++++|+..|+......+ +.. .+...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34578888899999999999999998777543 211 1223333444333221 2367788889
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHHHHHH-Hhc
Q 010994 352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK-VITSILSK-LGD 429 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~-~~~ 429 (496)
|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|+++++ +.|+.. .+..+... ...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-------l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK-------YAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887654 788899999999999999999999999875 556543 44444433 234
Q ss_pred cCCHHHHHHHHHHHHhc
Q 010994 430 EGSVQDVEAFVAALRTV 446 (496)
Q Consensus 430 ~g~~~~a~~~~~~~~~~ 446 (496)
.+..+.+...|+.+...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 45667777788776654
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.83 E-value=0.00017 Score=53.12 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV 440 (496)
Q Consensus 361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (496)
|...|++..+..+. +...+..+...|...|++++|+..|++++. -.+.+...+..+..++...|++++|...|
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALD------FDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH------HCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444443322 344455555555555555555555555544 11122344444455555555555555555
Q ss_pred HHHH
Q 010994 441 AALR 444 (496)
Q Consensus 441 ~~~~ 444 (496)
+...
T Consensus 77 ~~al 80 (115)
T 2kat_A 77 ESGL 80 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=7.8e-05 Score=57.55 Aligned_cols=98 Identities=12% Similarity=-0.006 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc----------hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 320 LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL----------VQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
.+.+++|...++...+..+ .+...|..+..++...++ +++|+..|++.++.++. +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 3445555555555555432 244455555555555544 56888888888887665 67788888888887
Q ss_pred cC-----------ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 010994 390 AG-----------KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSK 426 (496)
Q Consensus 390 ~~-----------~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 426 (496)
.| ++++|++.|+++++ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-------l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD-------EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence 64 89999999999987 77877666555443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.00085 Score=51.28 Aligned_cols=87 Identities=6% Similarity=-0.076 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994 313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN----NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF 388 (496)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 388 (496)
+...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3344444444455555555555443 33444444444544 455555555555555543 4445555555555
Q ss_pred h----cCChHHHHHHHHHHHH
Q 010994 389 D----AGKTERGFQCMKAALS 405 (496)
Q Consensus 389 ~----~~~~~~a~~~~~~~~~ 405 (496)
. .++.++|.++|+++.+
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH
Confidence 5 5555566666655554
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=0.00012 Score=69.03 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---CCC----CcccHHHHHHHHHhcCchhHHHHHHHHHHh-----cCCC-CCH-hHHHH
Q 010994 317 LMKLGEHEEAEKVLKEWELSG---NSY----DTRIPNAVIIGYCNNGLVQNAEAILEDLVE-----KGKA-TTP-NSWAV 382 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~~-~~~~~ 382 (496)
+...|++++|..++++..+.. +.+ ...+++.|...|...|++++|..++++.++ .|.. |+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344555666655555544320 111 123445555555555555555555555432 1221 111 13555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhhcCCCC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGW-KPDP-KVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 383 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
|...|...|++++|..+++++++......|- .|+. .+...+..++...|.+++|+.++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555533222221 1111 2233333444445555555555555543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.0003 Score=51.21 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=75.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----
Q 010994 376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN----- 450 (496)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----- 450 (496)
+...+..+...+...|++++|+..|+++++ -.+.+...+..+..++...|++++|...+++.....|.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 566788899999999999999999999998 233467888899999999999999999999998877666
Q ss_pred -HHHHHHHHHHHHhCC--CcHHHHHH
Q 010994 451 -RQMYHAFIKANIRNG--KGVDELLD 473 (496)
Q Consensus 451 -~~~~~~l~~~~~~~g--~~a~~~~~ 473 (496)
...+..+..++...| +.|...++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 677777777777776 55554443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.70 E-value=5.7e-05 Score=58.33 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=60.5
Q ss_pred HhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 010994 109 GRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQT----------DKALSHFRKMKEMGIALSTLTYNDIMCLYS 177 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 177 (496)
.+.+.+++|.+.++...+..| +...|+.+..++...+++ ++|+..|++..+.+.. +..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 455566666666666666666 566666666666666554 4777777776665333 5566777777776
Q ss_pred hcC-----------CCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994 178 KTG-----------QYEKVPDVLTEMKAKNIFPDNFSYRICIN 209 (496)
Q Consensus 178 ~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 209 (496)
..| ++++|...|++..+ +.|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 553 56666666666666 3555555544443
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=0.00018 Score=67.93 Aligned_cols=125 Identities=12% Similarity=-0.027 Sum_probs=81.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcC------CCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-cccHH
Q 010994 281 LYASLGNKSEVLRLWDLEKTACK------RYI-NRDYITMLEALMKLGEHEEAEKVLKEWELS-----GN-SYD-TRIPN 346 (496)
Q Consensus 281 ~~~~~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 346 (496)
.+...|++++|+.++++...... .|+ ..+++.+..+|...|++++|..++++..+. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35567888888888776554322 111 245777788888888888888888776632 21 122 34567
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHh-----cCCC-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 347 AVIIGYCNNGLVQNAEAILEDLVE-----KGKA-TT-PNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.|...|...|++++|..++++..+ .|.. |+ ..+.+.+..++...+.+++|..+|+++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888877653 2322 11 22455666677777778888888887765
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.00092 Score=51.09 Aligned_cols=111 Identities=8% Similarity=-0.077 Sum_probs=65.1
Q ss_pred cChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010994 76 KRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR----QRQTDKAL 151 (496)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 151 (496)
+++++|++.|+...+.+ ++... +...+...+.++.|..+|++..+. .++..+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN----EMFGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45667777777777665 12222 444444555566666666666553 345555566666665 56666666
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCC
Q 010994 152 SHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKN 196 (496)
Q Consensus 152 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 196 (496)
+.|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665553 45555556666655 556666666666665554
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=0.00038 Score=51.26 Aligned_cols=78 Identities=9% Similarity=-0.041 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
.|...|++..+.. +.+...+..+..++...|++++|+..|++.. ..+. .+...|..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444331 1133344444444444444444444444443 2221 23334444444444444444444444444
Q ss_pred H
Q 010994 264 E 264 (496)
Q Consensus 264 ~ 264 (496)
.
T Consensus 80 l 80 (115)
T 2kat_A 80 L 80 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.55 E-value=0.0011 Score=46.11 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555566666667777777777766665433 556666677777777777777777777765
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.41 E-value=0.001 Score=47.47 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994 236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKT 300 (496)
Q Consensus 236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 300 (496)
+...+..+..+|...|++++|+..|++..+..+ .+...|..+..+|...|++++|...|+....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566666666666666666666655433 3444566666666666666666666664443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.41 E-value=0.0019 Score=45.98 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
...+..+...|...|++++|...|++..+.++. +...|..+..+|...|++++|++.|+++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666666666666666655433 445566666666666666666666666554
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.39 E-value=0.0053 Score=54.65 Aligned_cols=75 Identities=8% Similarity=0.065 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994 339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK 418 (496)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 418 (496)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++.. +.|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr-------L~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN-------LRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCcC
Confidence 3455566666655666678888888887777765 5666676777777777888888888877776 567766
Q ss_pred HHHH
Q 010994 419 VITS 422 (496)
Q Consensus 419 ~~~~ 422 (496)
+|..
T Consensus 345 t~~~ 348 (372)
T 3ly7_A 345 TLYW 348 (372)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.0061 Score=54.23 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (496)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555444444455555555555555543 4444444555555555555555555555554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.98 E-value=0.0009 Score=47.52 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=34.2
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 349 IIGYCNNGLVQNAEAILEDLVEKGKATTPN-SWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
...+.+.|++++|...|++..+..+. +.. .+..+...|...|++++|+..|+++++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455566666666666666655433 445 566666666666666666666666665
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.93 E-value=0.028 Score=57.33 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994 202 FSYRICINSYGARSDLEGMEIILREM 227 (496)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~~ 227 (496)
..|..+...+.+.|+++.|++.|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34444444444444444444444444
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.90 E-value=0.0025 Score=59.07 Aligned_cols=92 Identities=8% Similarity=-0.117 Sum_probs=67.3
Q ss_pred hcCchhHHHHHHHHHHhc---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC-CCCCH-HHHHHHH
Q 010994 354 NNGLVQNAEAILEDLVEK---GKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG-WKPDP-KVITSIL 424 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~-~~~~~l~ 424 (496)
..|++++|..++++..+. -..|+ ..+++.+...|...|++++|+.+++++++.+..-.| ..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888876642 11222 347888999999999999999999998874433333 23333 5788888
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 010994 425 SKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~~~~ 445 (496)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 899999999999998886654
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.80 E-value=0.0087 Score=55.52 Aligned_cols=97 Identities=7% Similarity=-0.055 Sum_probs=64.6
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcC---CCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC-CCCCH-HH
Q 010994 349 IIGYCNNGLVQNAEAILEDLVEKG---KATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG-WKPDP-KV 419 (496)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~-~~ 419 (496)
+..+.+.|++++|..++++..+.. ..|+ ..+++.+...|...|++++|+.++++++..+..-.| ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556777888888877776431 1122 246778888888888888888888888774432222 22332 46
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 420 ITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77778888888888888888876544
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.80 E-value=0.012 Score=41.40 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994 383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPK-VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY 454 (496)
Q Consensus 383 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 454 (496)
....+...|++++|+..|+++++ ..| +.. .+..+..++...|++++|...|+...+..|.+...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ-------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 45678889999999999999997 344 556 888889999999999999999999888777777666
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.63 E-value=0.012 Score=54.61 Aligned_cols=89 Identities=7% Similarity=-0.013 Sum_probs=63.7
Q ss_pred hHHHhhcCHHHHHHHHHhchhc-----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-ChhHH
Q 010994 106 DLIGRVHGFLSAESYFSNLKDD-----EK----TYQTYGALLNCYVRQRQTDKALSHFRKMKEM-----G-IAL-STLTY 169 (496)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~ 169 (496)
..+.+.|++++|+..+++..+. +| ...+++.|..+|...|++++|+.++++...- | -.| ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344566777777777766543 12 2567899999999999999999999876432 2 112 23457
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994 170 NDIMCLYSKTGQYEKVPDVLTEMKA 194 (496)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (496)
+.|...|...|++++|..++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888998888888887654
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.54 E-value=0.021 Score=58.29 Aligned_cols=154 Identities=13% Similarity=0.076 Sum_probs=87.3
Q ss_pred HHHHhccChhHHHH-HHHHHHhCCCCCCC-cchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCH
Q 010994 70 RDLRKRKRFSQALE-VSDWMNRKGICVFA-PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT 147 (496)
Q Consensus 70 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 147 (496)
......+++++|.+ ++.. +. ......++..+.+.|..+.|.++.+ +.. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~--------i~~~~~~~~~~~~l~~~~~~~~a~~~~~-------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN--------VEGKDSLTKIARFLEGQEYYEEALNISP-------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG--------CCCHHHHHHHHHHHHHTTCHHHHHHHCC-------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc--------CCchHHHHHHHHHHHhCCChHHheecCC-------Ccc---hheehhhhcCCH
Confidence 34445677777766 4411 11 2233455566667777777776542 111 112334556777
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994 148 DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM 227 (496)
Q Consensus 148 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 227 (496)
++|+++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7777775332 2567777778878888888888777777632 334444455566666555555544
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994 228 ESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 228 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
. ..+. ++....+|.+.|++++|++++.++
T Consensus 734 ~-~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 E-TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp H-HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred H-HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4 3332 233444455566666666666554
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.48 E-value=0.006 Score=56.53 Aligned_cols=62 Identities=8% Similarity=-0.090 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHC-----C-CCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994 167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAK-----N-IFPD-NFSYRICINSYGARSDLEGMEIILREME 228 (496)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 228 (496)
.+++.|..+|...|++++|..++++..+- | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34555555555555555555555554321 2 1122 2335555555666666665555554443
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.06 Score=38.34 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=46.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994 376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY 454 (496)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 454 (496)
+...+..+...+...|+++.|...|+.+++....... -.+....+..+..++.+.|+++.|...++.+....|.+....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444555666666667777777777666653211111 123345666666677777777777777776666555555543
Q ss_pred H
Q 010994 455 H 455 (496)
Q Consensus 455 ~ 455 (496)
+
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.26 Score=38.61 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 010994 131 YQTYGALLNCYVRQRQTDKALSHFR 155 (496)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~ 155 (496)
...|..|.+...+.|+++-|.+.|.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3344444444444444444444443
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.28 E-value=0.21 Score=36.72 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
....++.+...|+-|.-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++.++-+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34444445555555555555555433 2334555555555555555555555555555554
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.3 Score=38.21 Aligned_cols=129 Identities=9% Similarity=0.083 Sum_probs=88.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH
Q 010994 139 NCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE 218 (496)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 218 (496)
+...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4455678899888887765 2778899999999999999999998888643 455666677778887
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994 219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLE 298 (496)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 298 (496)
...++-+... ..|- ++....++.-.|+++++.++|.+. |--|... -.....|-.+.|.++.+.+
T Consensus 78 ~L~kla~iA~-~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQ-TRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHH-HTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 7776665554 3332 555667777889999999888664 2212111 1112356667777776644
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.22 E-value=0.028 Score=39.13 Aligned_cols=69 Identities=17% Similarity=0.046 Sum_probs=41.6
Q ss_pred CCCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 010994 374 ATTPNSWAVVAAGYFDAGK---TERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449 (496)
Q Consensus 374 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 449 (496)
+.|+..+..+..++...++ .++|..+++++++ ..| +......+...+...|++++|...|+++.+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-------LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455566666666666666 4666666666665 334 3345555556666666666666666666654433
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.22 E-value=0.064 Score=37.25 Aligned_cols=62 Identities=6% Similarity=-0.004 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994 416 DPKVITSILSKLGDEGS---VQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 416 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 477 (496)
|...+..+..++...++ .++|..++++.....|.++..+..+...+.+.| ++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 455555555555555555555555555555555 455555555554
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.20 E-value=0.031 Score=42.57 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=27.9
Q ss_pred CcccHHHHHHHHHhcC---chhHHHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 341 DTRIPNAVIIGYCNNG---LVQNAEAILEDLVEKGKAT--TPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 341 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+..+...+..++++.+ ++++++.+|+...+.+ .| +...+-.+..+|.+.|++++|.++++.+++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444 3334444444444432 11 122333344444555555555555555544
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.14 E-value=0.078 Score=40.40 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHHhccC
Q 010994 357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALSVYVEGKGWKP--DPKVITSILSKLGDEG 431 (496)
Q Consensus 357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g 431 (496)
....+.+-|.+..+.|. ++..+...+..++++.+ +.++++.++++..+ .. .| +...+..+.-++.+.|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-----~~-~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-----KG-SKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----HS-CHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cC-CccchHHHHHHHHHHHHHcc
Confidence 44566677777777665 58888888999999988 66699999999987 22 35 3455666777889999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHH
Q 010994 432 SVQDVEAFVAALRTVIPMNRQMYH 455 (496)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~~~ 455 (496)
++++|.+.++.+.+..|.+....+
T Consensus 86 ~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999987777765543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.87 E-value=0.061 Score=38.30 Aligned_cols=62 Identities=8% Similarity=-0.002 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcC------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKG------KATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
-+..+...+.+.|+++.|..+|+...+.. -.+....+..+..++.+.|+++.|+..++++++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455666666666666666666655421 122455677777777788888888888877776
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.62 E-value=0.054 Score=46.19 Aligned_cols=89 Identities=13% Similarity=0.024 Sum_probs=62.2
Q ss_pred HHHHHHHHHhchhcCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-CCCCc
Q 010994 114 FLSAESYFSNLKDDEKT---YQTYGALLNCYVR-----QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT-GQYEK 184 (496)
Q Consensus 114 ~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~~~ 184 (496)
...|...++++.+.+|+ ...|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46677777777777775 5577777777777 378888888888877754332466777777777774 77788
Q ss_pred HHHHHHHHHHCCCC--CChh
Q 010994 185 VPDVLTEMKAKNIF--PDNF 202 (496)
Q Consensus 185 a~~~~~~m~~~~~~--p~~~ 202 (496)
+.+.+++..+.... |+..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHcCCCCCCCChh
Confidence 88888887776554 5543
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.50 E-value=0.23 Score=37.37 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC
Q 010994 321 GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT 375 (496)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 375 (496)
++.++|.++|+.+.+.+-.- ..+|....+.-.++|++..|.+++...+..++.|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 67777777777776542222 4445555555567777777777777777766653
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.49 E-value=6.2e-06 Score=74.58 Aligned_cols=117 Identities=4% Similarity=0.008 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHH
Q 010994 62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCY 141 (496)
Q Consensus 62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 141 (496)
+..|+.|..+..+.++..+|++-|- ..-+|..+..++..+.+.|++++-..++..+++...++.+=+.|+-+|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3467788999999999988887542 224688999999999999999999999998888766677778999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 010994 142 VRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM 192 (496)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 192 (496)
++.++..+-.+.+ -.||..-...+..-|...|.++.|.-+|..+
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 9999977644433 2367777888899999999999988887654
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.04 E-value=0.42 Score=36.01 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHhcccCcc-chHHHHHHH------HHhcCCHHHHHHHHHHHHhhc
Q 010994 236 DWSTYASAAHFYIKANLI------DKASDVLKKAEERLEQKDG-IGYNFLISL------YASLGNKSEVLRLWDLEKTAC 302 (496)
Q Consensus 236 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~-~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 302 (496)
|..+|-..+...-+.|+. ++..++|++....-+ |+. ..|...+.. +...++.++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP-PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344444445555555666 666677777666433 332 222222221 123478888888888777653
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010994 303 KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY 340 (496)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (496)
..- ...|.....-=.+.|++..|.+++......+..|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 322 4444444444567888999999998888876554
No 232
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.84 E-value=0.31 Score=33.57 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994 392 KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA 460 (496)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 460 (496)
+.-+..+-++.+.. ..+-|++.+..+.+.+|.+.+++..|.++|+.++........+|..+++-
T Consensus 25 D~~e~rrglN~l~~-----~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVG-----YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTT-----SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 34456666666665 77889999999999999999999999999998888766666678777643
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.62 E-value=0.57 Score=34.26 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=58.8
Q ss_pred HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH---HHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHH
Q 010994 353 CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER---GFQCMKAALSVYVEGKGWKP--DPKVITSILSKL 427 (496)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~ 427 (496)
........+.+-|......|. |+..+-..+..++.+..+... ++.++++... .-.| .......+.-++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------KGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------TSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHH
Confidence 334445555566665555444 566666667777777776655 7777777664 2223 223344555677
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994 428 GDEGSVQDVEAFVAALRTVIPMNRQM 453 (496)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 453 (496)
.+.|++++|.+.++.+.+..|.+...
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 78888888888888777766666544
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.55 E-value=0.44 Score=43.44 Aligned_cols=116 Identities=10% Similarity=0.022 Sum_probs=72.3
Q ss_pred ccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHH-HHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010994 75 RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSA-ESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSH 153 (496)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 153 (496)
.|+.+.|.+.++.....-.-++-++... ..+-.+ ...+++.. ..+...++..+...|++++|...
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~---------~~w~~~~r~~l~~~~-----~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRD---------FQFVEPFATALVEDK-----VLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTT---------STTHHHHHHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCc---------hhHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788888888888877531111111100 111111 11111111 23445667777888888888888
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH-----CCCCCChhhHH
Q 010994 154 FRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA-----KNIFPDNFSYR 205 (496)
Q Consensus 154 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 205 (496)
++.+.... +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 194 l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 194 LEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 88776652 34777888888888888888888888887654 38888876543
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.52 E-value=0.025 Score=51.82 Aligned_cols=121 Identities=7% Similarity=0.098 Sum_probs=62.7
Q ss_pred CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHH
Q 010994 60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLN 139 (496)
Q Consensus 60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~ 139 (496)
-|+..|..+|....+.|.+++-+..+....+.. -.|..-+.++-.|++.+++.+-+.++. .||..-...+.+
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGD 152 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGD 152 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHH
Confidence 355567777777777777777777766655543 344555555556666655544332221 233333344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--------------------CCCChhHHHHHHHHHHhcCCCCcHHHH
Q 010994 140 CYVRQRQTDKALSHFRKMKEMG--------------------IALSTLTYNDIMCLYSKTGQYEKVPDV 188 (496)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~ 188 (496)
-|...|.++.|.-+|..+.... -.-++.||..+-.+|...+.+.-|.-.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence 4555555554444443321110 012455666666666666555554433
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.48 E-value=0.31 Score=41.61 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=30.2
Q ss_pred chHHHHHHHHHhc-----CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 010994 273 IGYNFLISLYASL-----GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL-GEHEEAEKVLKEWELS 336 (496)
Q Consensus 273 ~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 336 (496)
..|..+...|... |+.++|.+.|++.....+..+..++......++.. |+.+.+.+.+++....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 3455555555442 45555555555544444322344444444444442 4555555555555444
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=3.5 Score=38.27 Aligned_cols=151 Identities=10% Similarity=0.012 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCchhHHHHHHHHHHh----cCCCCCH--hH
Q 010994 311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYD-----TRIPNAVIIGYCNNGLVQNAEAILEDLVE----KGKATTP--NS 379 (496)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~~--~~ 379 (496)
..+...+...|++.+|..++..+...-...+ ...+...+..|...+++..|..+++++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4567777788888888888888764322212 23456667778888888888888887642 2222221 35
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH----HHHHhccCCHHHHHHHHHHHHh-cCCCCHHHH
Q 010994 380 WAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI----LSKLGDEGSVQDVEAFVAALRT-VIPMNRQMY 454 (496)
Q Consensus 380 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 454 (496)
+...+..+...+++.+|.+.|.++...+ ...-+...+... +.+..-.+..+.-..++..... ..-++...|
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~----~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~ 296 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTD----AIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQ 296 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH----HHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHH
Confidence 6677777888899999988888887622 112232222211 1111111111222222222222 223456778
Q ss_pred HHHHHHHHhCC
Q 010994 455 HAFIKANIRNG 465 (496)
Q Consensus 455 ~~l~~~~~~~g 465 (496)
..++.+|....
T Consensus 297 ~~L~k~f~~~~ 307 (445)
T 4b4t_P 297 ESLVKLFTTNE 307 (445)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhch
Confidence 88888887766
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.81 E-value=1.4 Score=32.42 Aligned_cols=136 Identities=11% Similarity=0.012 Sum_probs=79.7
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHH
Q 010994 283 ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAE 362 (496)
Q Consensus 283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (496)
.-.|..++..++..+..... +..-|+.+|--....-+-+-..++++.+-+. .|.. .+|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 34566777777766555442 2344555554444444545555555554332 1221 123333333
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994 363 AILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAA 442 (496)
Q Consensus 363 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (496)
..+-.+- .+...+..-+..+..+|+-++..+++...+. ..+|++.....+..+|.+.|+..+|.+++.+
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK------NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc------cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3322221 1445556667777788888888888887653 5677888888888888888888888888776
Q ss_pred HHh
Q 010994 443 LRT 445 (496)
Q Consensus 443 ~~~ 445 (496)
..+
T Consensus 151 AC~ 153 (172)
T 1wy6_A 151 ACK 153 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.51 E-value=7.3 Score=39.58 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010994 134 YGALLNCYVRQRQTDKALSHFRKMKE 159 (496)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~ 159 (496)
|..++.+..+.++.+.+.++|+.+..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44566667777788888888877653
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.40 E-value=4.9 Score=37.26 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhc--CCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH--H
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEK--GKATT---PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP--K 418 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~ 418 (496)
..|...|...|++.+|..++..+... +.... ...+...+..|...+++..|..++.++...... ....|+. .
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~-~~~~~~lk~~ 219 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK-NPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-SSCCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc-cCCcHHHHHH
Confidence 56788899999999999999998632 22211 236777888999999999999999987531110 1112222 3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 419 VITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
.+...+..+...+++.+|.+.|..+..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556677778888999999887776654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.34 E-value=0.3 Score=44.52 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI 423 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 423 (496)
..++..+...|+.++|...+..+....+- +...|..++.++.+.|+..+|++.|++......+..|+.|+..+-...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45667777888888888888888776544 777888888888888888888888888877655566888888765444
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.29 E-value=0.84 Score=33.42 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994 393 TERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA 460 (496)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 460 (496)
.-+..+-++.+.. ..+-|++.+....+.+|.+.+|+..|.++|+.++....+...+|..+++-
T Consensus 69 ~wElrrglN~l~~-----~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVG-----YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTT-----SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 3345555666655 77899999999999999999999999999999988776667778877643
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.52 Score=46.63 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=37.2
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994 426 KLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK 476 (496)
Q Consensus 426 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 476 (496)
-|...|+++.|..+-++.....|.+-.+|..|..+|...| +.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3556677777877777777777777778888888888777 67776666653
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.89 E-value=0.57 Score=34.25 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhH---HHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcCChHHHHH
Q 010994 323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQN---AEAILEDLVEKGKA-TTPNSWAVVAAGYFDAGKTERGFQ 398 (496)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~ 398 (496)
+..+.+-+......|. ++..+-..+..++.+..+... ++.+++.+...+.+ -.....-.+..++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444433332 344444444555555544333 55555555544210 022334445566666666666666
Q ss_pred HHHHHHH
Q 010994 399 CMKAALS 405 (496)
Q Consensus 399 ~~~~~~~ 405 (496)
+++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666665
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.74 E-value=9.5 Score=38.78 Aligned_cols=257 Identities=13% Similarity=0.017 Sum_probs=135.0
Q ss_pred HHhhcCChHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc-------cCccchHHHHHHH
Q 010994 210 SYGARSDLEGMEIILREMESQP-HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-------QKDGIGYNFLISL 281 (496)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~l~~~ 281 (496)
+....|+.++++.++....... .-.+....-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556788888888877665111 1112223333445556666766677777776554321 0111112223223
Q ss_pred HHhcCC-HHHHHHHHHHHHhhcCCCCchhHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCch
Q 010994 282 YASLGN-KSEVLRLWDLEKTACKRYINRDYI--TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLV 358 (496)
Q Consensus 282 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 358 (496)
+.-.|. -+++.+.+..+..... ....... .+...+.-.|+-+....++..+.+.. .-+..-...+.-++.-.|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 2455555554544322 1111122 23333455677777788888776542 11222222333344467888
Q ss_pred hHHHHHHHHHHhcCCCCCHhH-H---HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHH
Q 010994 359 QNAEAILEDLVEKGKATTPNS-W---AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ 434 (496)
Q Consensus 359 ~~a~~~~~~~~~~~~~p~~~~-~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 434 (496)
+.+..+.+.+... .++.. | .++..+|+..|+.....++++.+.. ....+......+.-++...|+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~------d~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS------DSNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHTSSSCS
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc------CCcHHHHHHHHHHHHhhccCCHH
Confidence 8888888888763 13322 2 2344567778887666668888876 22222332333333444466766
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---CcHHHHHHHHHh
Q 010994 435 DVEAFVAALRTVIPMNRQMYHAFIKANIRNG---KGVDELLDSMKA 477 (496)
Q Consensus 435 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~a~~~~~~m~~ 477 (496)
.+.++++.+.+...|.+..-..+.-+....| .++++++..+..
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6777777666544454444444444444444 467777777764
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.13 E-value=3.1 Score=44.09 Aligned_cols=144 Identities=11% Similarity=-0.024 Sum_probs=80.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC---------------
Q 010994 206 ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK--------------- 270 (496)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--------------- 270 (496)
.++..+...+..+.+.++..... .+....-.+..+|...|++++|.+.|.+... ++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 34555556666666666554443 1222233466777788888888888866421 1100
Q ss_pred --------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010994 271 --------DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN----RDYITMLEALMKLGEHEEAEKVLKEWELSGN 338 (496)
Q Consensus 271 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (496)
-..-|..++..+.+.+.++.+.++-+...+.....+. ..|..+..++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 0012556666667777777777766655544332221 1456667777777777777777766654422
Q ss_pred CCCcccHHHHHHHHHhcCch
Q 010994 339 SYDTRIPNAVIIGYCNNGLV 358 (496)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~ 358 (496)
-......++..+|..|..
T Consensus 970 --r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCH
T ss_pred --HHHHHHHHHHHHHhCCCh
Confidence 223445555555555443
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.55 E-value=1.1 Score=44.33 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=39.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994 279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEW 333 (496)
Q Consensus 279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 333 (496)
...+...|+++-|+++-++.....+ .+-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445667888888888877666554 55677888888888888888888777766
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.54 E-value=12 Score=33.90 Aligned_cols=165 Identities=11% Similarity=0.034 Sum_probs=84.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcccCccchH----
Q 010994 204 YRICINSYGARSDLEGMEIILREMESQPHIVLD---WSTYASAAHFYIKA-NLIDKASDVLKKAEERLEQKDGIGY---- 275 (496)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~---- 275 (496)
...+...|.+.|+.++...++.....-.+..+- ......++..+... +..+.-.++..+..+..- .+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344555566666666666665555411111111 11223444444442 223333444444333211 122333
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch-----hHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCcccHH
Q 010994 276 --NFLISLYASLGNKSEVLRLWDLEKTACKRYINR-----DYITMLEALMKLGEHEEAEKVLKEWELS--GNSYDTRIPN 346 (496)
Q Consensus 276 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 346 (496)
..++..|...|++.+|.+++..+.......|.. .+..-+..|...+++.++...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 146677778888888888777777665544432 2445566677778888888777766532 1222332221
Q ss_pred HH----HHHHH-hcCchhHHHHHHHHHH
Q 010994 347 AV----IIGYC-NNGLVQNAEAILEDLV 369 (496)
Q Consensus 347 ~l----~~~~~-~~g~~~~a~~~~~~~~ 369 (496)
.+ ...+. ..+++..|...|-+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 12244 6777887777666553
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.16 E-value=12 Score=33.71 Aligned_cols=241 Identities=13% Similarity=0.080 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhccc-C---ccchHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCCchhH---
Q 010994 239 TYASAAHFYIKANLIDKASDVLKKAEERLEQ-K---DGIGYNFLISLYASL-GNKSEVLRLWDLEKTACKRYINRDY--- 310 (496)
Q Consensus 239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--- 310 (496)
....|...|.+.|+.++..+++......-.. + .......++..+... +..+.-.++.....+... ....+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3456889999999999999998876443211 1 123456677777654 334444444444433222 222333
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHhcCchhHHHHHHHHHHhc--CCCCCHhHH
Q 010994 311 ---ITMLEALMKLGEHEEAEKVLKEWELSGNSYDT-----RIPNAVIIGYCNNGLVQNAEAILEDLVEK--GKATTPNSW 380 (496)
Q Consensus 311 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~ 380 (496)
..++..|...|++.+|..++..+.+.--..|. .++-.-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25788999999999999999988864222232 23455667788899999999999887642 232344332
Q ss_pred H----HHHHHHH-hcCChHHHHHHHHHHHHhhhcCCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHH-HH-HhcCCCC
Q 010994 381 A----VVAAGYF-DAGKTERGFQCMKAALSVYVEGKGWKPD---PKVITSILSKLGDEGSVQDVEAFVA-AL-RTVIPMN 450 (496)
Q Consensus 381 ~----~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~-~~-~~~~~~~ 450 (496)
. .-...+. ..+++..|...|-++...|- ..+ .|. ...|..+. +... ++..+...++. .. .....|.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~-~~~-~~~~~~~lkYlvL~-aLl~-~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD-SVD-SVKALTSLKYMLLC-KIML-GQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT-TTC-HHHHHHHHHHHHHH-HHHT-TCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc-ccc-cHHHHHHHHHHHHH-HHHc-CCHHHHHHHhccccccccCCcc
Confidence 2 2233455 78999999999999876441 011 121 11232222 2222 33333333332 21 2123455
Q ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHhCCCCCChh
Q 010994 451 RQMYHAFIKANIRNG-KGVDELLDSMKADGIDEDEE 485 (496)
Q Consensus 451 ~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g~~p~~~ 485 (496)
...+..++.+|.... .+...++..... .+..|..
T Consensus 256 i~~l~~L~~a~~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 256 IDAMKSVAEASHKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcChH
Confidence 666777888877766 444444444322 2444553
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.02 E-value=3.3 Score=31.86 Aligned_cols=27 Identities=11% Similarity=0.003 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994 418 KVITSILSKLGDEGSVQDVEAFVAALR 444 (496)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 444 (496)
..--.+..+|.+.|++++|..+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 344446667788888888888877653
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.52 E-value=21 Score=37.75 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=70.3
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC-C----------------
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE-K---------------- 129 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~---------------- 129 (496)
.++..+...+.++-+.++..+... +|...-.....+...|++++|...|.+....- .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 455556666666666665544322 23332333456667777777777776653210 0
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC
Q 010994 130 -------TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALST----LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF 198 (496)
Q Consensus 130 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 198 (496)
-..-|.-++..+-+.+.++.+.++-....+..-+-+. ..|..+...+...|++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 0122444555555556665555554444332111111 13555556666666666666555555443222
Q ss_pred CChhhHHHHHHHHhhcCCh
Q 010994 199 PDNFSYRICINSYGARSDL 217 (496)
Q Consensus 199 p~~~~~~~li~~~~~~~~~ 217 (496)
......++...|..|+.
T Consensus 971 --~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCH
T ss_pred --HHHHHHHHHHHHhCCCh
Confidence 23344444444444443
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.22 E-value=6.5 Score=36.24 Aligned_cols=62 Identities=19% Similarity=-0.025 Sum_probs=30.9
Q ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT--TPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+...+...|.+.|+++.|.+.+.++.+.-..+ -...+-.++..+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555555555555431111 123444455555555555555555555544
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.09 E-value=4 Score=30.02 Aligned_cols=81 Identities=10% Similarity=-0.009 Sum_probs=51.1
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHHhccCh---hHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhc
Q 010994 49 ELDNWVKN-GNKVRVGELQRIIRDLRKRKRF---SQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNL 124 (496)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 124 (496)
+-+.+.++ +..|+..+-..+..++.+..+. .+++.+++.+.+.+. ....+-.-++.-.+.+.|+++.|.+..+.+
T Consensus 26 l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~-~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 26 LRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444454 6777888877888888887654 468888888887651 011222333344555777777777777777
Q ss_pred hhcCCC
Q 010994 125 KDDEKT 130 (496)
Q Consensus 125 ~~~~~~ 130 (496)
.+.+|+
T Consensus 105 L~~eP~ 110 (134)
T 3o48_A 105 FEHERN 110 (134)
T ss_dssp HTTCTT
T ss_pred HhhCCC
Confidence 776663
No 254
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.58 E-value=6.3 Score=33.47 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=11.2
Q ss_pred hhhHHHhhcCHHHHHHHHHh
Q 010994 104 QLDLIGRVHGFLSAESYFSN 123 (496)
Q Consensus 104 ~~~~~~~~~~~~~A~~~~~~ 123 (496)
.+...+..|+.+....+++.
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 35555566666655555543
No 255
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=85.42 E-value=18 Score=31.66 Aligned_cols=54 Identities=7% Similarity=-0.026 Sum_probs=26.4
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcch--hhhhhhHHHhhcCHHHHHHHHHh
Q 010994 66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCD--HAVQLDLIGRVHGFLSAESYFSN 123 (496)
Q Consensus 66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~ 123 (496)
++.+..-++.|+.+-+..+++ .|..+...+. -..-+...+..|+.+.+.-+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 344445567777665555443 3311111111 11235556667777766666554
No 256
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.02 E-value=11 Score=31.89 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=6.5
Q ss_pred HHHHHHhcCCHHHH
Q 010994 137 LLNCYVRQRQTDKA 150 (496)
Q Consensus 137 li~~~~~~g~~~~A 150 (496)
.+...++.|+.+..
T Consensus 8 ~L~~A~~~g~~~~v 21 (285)
T 1wdy_A 8 LLIKAVQNEDVDLV 21 (285)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 33444455555433
No 257
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=84.99 E-value=10 Score=34.94 Aligned_cols=208 Identities=12% Similarity=0.065 Sum_probs=91.6
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCCCCC-cchhhhhhhHHHhhcCHHHHHHHHHhchhcC-CCHHHHHHHHHHHHhc
Q 010994 67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFA-PCDHAVQLDLIGRVHGFLSAESYFSNLKDDE-KTYQTYGALLNCYVRQ 144 (496)
Q Consensus 67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 144 (496)
+.+...+..|+.+-+..+ .+.+..+.. .......+...+..|+.+.+..+++.-.... .+..- .+.+...++.
T Consensus 16 t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHC
Confidence 345555677776544444 444421111 1112234666777888887777776532221 12111 2234445566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhh--HHHHHHHHhhcCChHH
Q 010994 145 RQTDKALSHFRKMKEMGIALST---LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFS--YRICINSYGARSDLEG 219 (496)
Q Consensus 145 g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~ 219 (496)
|+.+-+.-+ .+.|..|+. ..++.|. ..+..|+.+ +++.+.+.+..++... -.+.+...+..|+.+-
T Consensus 91 g~~~~v~~L----l~~ga~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 91 GHTNMVKLL----LENNANPNLATTAGHTPLH-IAAREGHVE----TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp TCHHHHHHH----HHHTCCTTCCCTTCCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHH----HhCCCCCCCCCCCCCcHHH-HHHHcCCHH----HHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 776544333 344544432 2223333 334455543 3344444443322111 1123444556677765
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccch---HHHHHHHHHhcCCHHHHHHHHH
Q 010994 220 MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG---YNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
+..+++.-. ..+. .+.... +.+...+..|+.+-+. .+.+.+..++... ++. +...+..|+.+-+..+++
T Consensus 162 v~~Ll~~g~-~~~~-~~~~g~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 162 AELLLERDA-HPNA-AGKNGL-TPLHVAVHHNNLDIVK----LLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp HHHHHHTTC-CTTC-CCSSCC-CHHHHHHHTTCHHHHH----HHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCC-CCCC-CCCCCC-CHHHHHHHcCCHHHHH----HHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHH
Confidence 555544322 1111 111111 1334445566655433 3333454443322 222 334456666655554443
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.62 E-value=9.2 Score=29.42 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 010994 313 MLEALMKLGEHEEAEKVLKEW 333 (496)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~ 333 (496)
+..+|.+.++.++|..+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 444445555555555554443
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.51 E-value=8.6 Score=35.44 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHCC--CCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHH-
Q 010994 167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKN--IFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASA- 243 (496)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 243 (496)
.++..+...|.+.|++++|.+.|.++...- ...-...+-..++.+...+++..+...+++......-.+++...+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356778888889999999999998887753 22234567778888888899998888887765211111333332211
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHH
Q 010994 244 ---AHFYIKANLIDKASDVLKKAEE 265 (496)
Q Consensus 244 ---i~~~~~~~~~~~a~~~~~~m~~ 265 (496)
...+...+++..|-..|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2223456888888888877654
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.29 E-value=10 Score=27.85 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 360 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+++.+++++.+.+..-....+-.+..++.+.|++++|.++.+.+++
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444433111223344444555555555555555555543
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.42 E-value=41 Score=32.63 Aligned_cols=76 Identities=4% Similarity=-0.172 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010994 171 DIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA 250 (496)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (496)
..+..+.+.+++......+.. .+.+...-.....+....|+..+|....+.+= ..+. .....+..++..+.+.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW-~~~~-~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW-LTGK-SQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-SCSS-CCCTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hCCC-CCcHHHHHHHHHHHHC
Confidence 334445555555444433221 12233333334556666677666666665554 2222 2334455566666655
Q ss_pred CCh
Q 010994 251 NLI 253 (496)
Q Consensus 251 ~~~ 253 (496)
|.+
T Consensus 150 g~l 152 (618)
T 1qsa_A 150 GKQ 152 (618)
T ss_dssp TCS
T ss_pred CCC
Confidence 544
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.85 E-value=31 Score=30.25 Aligned_cols=27 Identities=26% Similarity=0.046 Sum_probs=18.5
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHH
Q 010994 304 RYINRDYITMLEALMKLGEHEEAEKVL 330 (496)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 330 (496)
..++.....+...|.+.+++.+|...|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 455566666777777777777777666
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.32 E-value=8.6 Score=32.36 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=34.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 010994 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK 371 (496)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (496)
...+.|++++|......-++.. +-|...-..+++.+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445666777766666666553 235555556666677777777777666666654
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.15 E-value=13 Score=25.69 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=19.6
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 220 MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAE 264 (496)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 264 (496)
..+-++.+. ..+..|+.....+.+.+|-+.+++.-|.++|+-++
T Consensus 29 ~rrglN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344443 34444444444444444444444444444444443
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.97 E-value=5.3 Score=33.61 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=32.2
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER 266 (496)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 266 (496)
...+.|+++++++....-. +..+ -|...-..++..+|-.|+++.|..-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~V-R~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAI-KASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHH-HTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHH-HhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455666666666665554 3333 45555556666666666666666666665544
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.06 E-value=24 Score=28.16 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC
Q 010994 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS-TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD 200 (496)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 200 (496)
..|-..++.+ ..+...++.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3444444443 24457788899999988876543 44577778888888999999999999888877764
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.92 E-value=56 Score=31.67 Aligned_cols=49 Identities=0% Similarity=-0.263 Sum_probs=29.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994 384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV 440 (496)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (496)
+..+...|....|...+..... +. +......+.......|....+....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~------~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVK------SK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT------TC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHh------cC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 4456777888888888887764 32 3333334444445566666655443
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.26 E-value=40 Score=29.57 Aligned_cols=82 Identities=6% Similarity=-0.063 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314 (496)
Q Consensus 235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 314 (496)
-|......+...|.+.+++.+|...|-. +..++...+..++.-+...+...++ +...- ..+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~il----g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfia-RaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVL----GTKESPEVLARMEYEWYKQDESHTA--------------PLYCA-RAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTT----SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHH-HHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHh----cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHH-HHH
Confidence 4556666788888888888888777632 3333335665555444433321111 11111 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 010994 315 EALMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~ 335 (496)
--|...+++..|..+++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334556788888776665553
No 269
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=75.91 E-value=31 Score=28.14 Aligned_cols=85 Identities=12% Similarity=0.026 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhh--HHHHHHHHh
Q 010994 138 LNCYVRQRQTDKALSHFRKMKEMGIALSTL---TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFS--YRICINSYG 212 (496)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~ 212 (496)
+...++.|+.+.+..+++.+.+.|..++.. .++.| ...+..|+. ++++.+.+.|..++... -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-HLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHH-HHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 444556677777777777666665544432 22233 233344443 45555555665543221 112333344
Q ss_pred hcCChHHHHHHHHHh
Q 010994 213 ARSDLEGMEIILREM 227 (496)
Q Consensus 213 ~~~~~~~a~~~~~~~ 227 (496)
..|+.+.+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 566666555555543
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.82 E-value=42 Score=29.14 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH----HHHHHHHCCCCCChhhHHHHH
Q 010994 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD----VLTEMKAKNIFPDNFSYRICI 208 (496)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~li 208 (496)
.|.++..-|.+.+++++|++++..-- ..+.+.|+...|-+ +.+-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34555566666677777766654321 11222233322222 234444445555555555555
Q ss_pred HHHhhcCChH-HHHHHHHHhh----cCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994 209 NSYGARSDLE-GMEIILREME----SQPH-IVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLY 282 (496)
Q Consensus 209 ~~~~~~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 282 (496)
..+.....-+ .-.++++++. ...+ ..-+......+...|.+.|++.+|...|-. +-..+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 5544422111 1112222221 1111 224566777788888888988888877653 2212344555555444
Q ss_pred Hhc---CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 283 ASL---GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWE 334 (496)
Q Consensus 283 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (496)
... |...++--+.. ..+-.|...|+...|..+++...
T Consensus 176 ~~~~~~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 443 43333211111 11223445678888888777654
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.61 E-value=24 Score=26.31 Aligned_cols=24 Identities=8% Similarity=0.242 Sum_probs=11.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 010994 382 VVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 382 ~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+..++.+.|++++|.++.+.+++
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444444443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.92 E-value=24 Score=25.98 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 220 MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEE 265 (496)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 265 (496)
..+-++.+. ..+..|+.....+.+.+|-+.+|+.-|.++|+-++.
T Consensus 72 lrrglN~l~-~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444443 444445555555555555555555555555554443
No 273
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=73.74 E-value=23 Score=28.88 Aligned_cols=13 Identities=8% Similarity=-0.174 Sum_probs=5.3
Q ss_pred HhcCchhHHHHHH
Q 010994 353 CNNGLVQNAEAIL 365 (496)
Q Consensus 353 ~~~g~~~~a~~~~ 365 (496)
.+.|+.+-+..++
T Consensus 218 ~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 218 KQRKNVWMINHLQ 230 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 3444444433333
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.01 E-value=12 Score=25.78 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHhCC
Q 010994 77 RFSQALEVSDWMNRKG 92 (496)
Q Consensus 77 ~~~~a~~~~~~~~~~~ 92 (496)
+.++|..+-+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~ 37 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG 37 (116)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3445555555554443
No 275
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=71.28 E-value=26 Score=27.38 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=55.7
Q ss_pred ccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhh
Q 010994 24 TNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAV 103 (496)
Q Consensus 24 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 103 (496)
-...+...|...|.+-+.+...+..++..+.+.|.--|.......+....+.|.+. ...+-..+.++| ++......
T Consensus 30 ~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KG---I~~~~I~~ 105 (177)
T 3e3v_A 30 YQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKG---IDDNIAED 105 (177)
T ss_dssp SSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTT---CCHHHHHH
T ss_pred cccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcC---CCHHHHHH
Confidence 34556677778888777777788888898888888888877788888877665443 356667777888 34544444
Q ss_pred hhh
Q 010994 104 QLD 106 (496)
Q Consensus 104 ~~~ 106 (496)
.+.
T Consensus 106 al~ 108 (177)
T 3e3v_A 106 ALI 108 (177)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.59 E-value=11 Score=25.86 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=7.8
Q ss_pred ChhHHHHHHHHHHhCC
Q 010994 77 RFSQALEVSDWMNRKG 92 (496)
Q Consensus 77 ~~~~a~~~~~~~~~~~ 92 (496)
+.++|..+-+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~ 36 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG 36 (115)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3445555555554443
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=68.27 E-value=55 Score=27.77 Aligned_cols=10 Identities=0% Similarity=-0.001 Sum_probs=4.6
Q ss_pred HHhcCCHHHH
Q 010994 141 YVRQRQTDKA 150 (496)
Q Consensus 141 ~~~~g~~~~A 150 (496)
.+..|+.+-+
T Consensus 38 A~~~g~~~~v 47 (285)
T 3kea_A 38 AIADNNVRLV 47 (285)
T ss_dssp HHHTTCHHHH
T ss_pred HHHcCCHHHH
Confidence 3345555443
No 278
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=67.03 E-value=44 Score=27.02 Aligned_cols=9 Identities=0% Similarity=-0.506 Sum_probs=3.5
Q ss_pred HhcCChHHH
Q 010994 388 FDAGKTERG 396 (496)
Q Consensus 388 ~~~~~~~~a 396 (496)
.+.|+.+-+
T Consensus 218 ~~~~~~~~v 226 (240)
T 3eu9_A 218 KQRKNVWMI 226 (240)
T ss_dssp HHTTCHHHH
T ss_pred HHcCcHHHH
Confidence 333444333
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.97 E-value=41 Score=29.82 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 010994 240 YASAAHFYIKANLIDKASDVLKKA 263 (496)
Q Consensus 240 ~~~li~~~~~~~~~~~a~~~~~~m 263 (496)
...+|.-|...++.++|...++++
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 345677777778888877777775
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.57 E-value=52 Score=26.18 Aligned_cols=142 Identities=15% Similarity=0.056 Sum_probs=66.9
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI 349 (496)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (496)
++...-...+..+...|..+..-.+.+ +.. .++...-...+.++...++.+.. ..+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 455555555666666665333222322 222 24445555555666666653322 22222222 23444445555
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD 429 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 429 (496)
.++.+.|+.+ +...+..+.+ .++...-...+.++...|+. ++...+..++. .++..+-...+.++.+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~--------d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK--------DEDGWVRQSAADALGE 169 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT--------CSSHHHHHHHHHHHHH
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Confidence 5565555533 2333333332 23555555555555555553 23444444332 3455555555666665
Q ss_pred cCC
Q 010994 430 EGS 432 (496)
Q Consensus 430 ~g~ 432 (496)
.+.
T Consensus 170 ~~~ 172 (211)
T 3ltm_A 170 IGG 172 (211)
T ss_dssp HCS
T ss_pred hCc
Confidence 555
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.58 E-value=46 Score=25.18 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC
Q 010994 150 ALSHFRKMKEMGIALS-TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP 199 (496)
Q Consensus 150 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 199 (496)
+.++|..|..+|+--. ...|......+...|++.+|.++|+.-++++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6666666666655433 3345556666666677777777777666665555
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.13 E-value=13 Score=33.01 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 134 YGALLNCYVRQRQTDKALSHFRKMK 158 (496)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~ 158 (496)
...+|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4556666777777777777776653
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.63 E-value=61 Score=26.28 Aligned_cols=24 Identities=4% Similarity=0.111 Sum_probs=13.9
Q ss_pred HHHHHhccChhHHHHHHHHHHhCC
Q 010994 69 IRDLRKRKRFSQALEVSDWMNRKG 92 (496)
Q Consensus 69 i~~~~~~~~~~~a~~~~~~~~~~~ 92 (496)
+...++.|+.+-...+++.+.+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344456666666666666555544
No 284
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.86 E-value=36 Score=23.46 Aligned_cols=80 Identities=10% Similarity=-0.056 Sum_probs=45.7
Q ss_pred hcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 010994 111 VHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLT 190 (496)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (496)
.+..++|..+-+.+...+-...+--+-+..+...|++++|+.+.+.+. .||...|.+|.. .+.|-.+++...+.
T Consensus 19 ~H~HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 455667776666665543322222223344566777777776654433 567777766654 35566666666666
Q ss_pred HHHHCC
Q 010994 191 EMKAKN 196 (496)
Q Consensus 191 ~m~~~~ 196 (496)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666554
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=61.65 E-value=38 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=5.2
Q ss_pred hcCChHHHHHHH
Q 010994 213 ARSDLEGMEIIL 224 (496)
Q Consensus 213 ~~~~~~~a~~~~ 224 (496)
..|+.+-+..++
T Consensus 81 ~~~~~~~~~~Ll 92 (201)
T 3hra_A 81 AQGRTEILAYML 92 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 344444444444
No 286
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=61.42 E-value=48 Score=24.72 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=54.4
Q ss_pred CCCHhHHHHHHHHHHhcCCh---HHHHHHHHHHHHhhhcCCCCCC-CH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994 374 ATTPNSWAVVAAGYFDAGKT---ERGFQCMKAALSVYVEGKGWKP-DP-KVITSILSKLGDEGSVQDVEAFVAALRTVIP 448 (496)
Q Consensus 374 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 448 (496)
.|+..+--.+..++.+..+. .+++.++++... ..| +. .....+.-++.+.|++++|.++.+.+.+..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 56777777788888887765 468888888876 223 33 3445566789999999999999999988777
Q ss_pred CCHHH
Q 010994 449 MNRQM 453 (496)
Q Consensus 449 ~~~~~ 453 (496)
.|...
T Consensus 109 ~n~QA 113 (144)
T 1y8m_A 109 NNKQV 113 (144)
T ss_dssp CCHHH
T ss_pred CcHHH
Confidence 66544
No 287
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.02 E-value=38 Score=23.41 Aligned_cols=81 Identities=11% Similarity=-0.004 Sum_probs=44.9
Q ss_pred hhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHH
Q 010994 110 RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL 189 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (496)
-.+..++|..+-+.+...+-...+--+-+..+...|++++|+.+.+.+. .||...|.+|... +.|-.+++...+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 3455667766666665543322222222344566777777777665443 5677777666543 445555665555
Q ss_pred HHHHHCC
Q 010994 190 TEMKAKN 196 (496)
Q Consensus 190 ~~m~~~~ 196 (496)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555543
No 288
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.86 E-value=15 Score=30.76 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=9.4
Q ss_pred HHhcCchhHHHHHHHHHH
Q 010994 352 YCNNGLVQNAEAILEDLV 369 (496)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~ 369 (496)
.++.|+.+-+..++++-.
T Consensus 232 A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 345566555555555443
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.78 E-value=59 Score=24.94 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCh
Q 010994 150 ALSHFRKMKEMGIALS-TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN 201 (496)
Q Consensus 150 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 201 (496)
+.++|..|..+||--. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5667777777765433 334566666666777777777777777776666643
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.65 E-value=58 Score=26.84 Aligned_cols=91 Identities=11% Similarity=-0.033 Sum_probs=49.1
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCCCCCCC------cchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHH
Q 010994 66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFA------PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLN 139 (496)
Q Consensus 66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~ 139 (496)
---++.+...+++++|+++++...+.-. ... .......+..-.....-..+..+.+.+.. .++...-...+.
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~-~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~ 99 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLE-DLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHH
Confidence 3457788889999999999887765320 001 01112223333333333444444444422 334455555666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010994 140 CYVRQRQTDKALSHFRKMK 158 (496)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~ 158 (496)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 6666677777766665543
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.53 E-value=1.2e+02 Score=27.49 Aligned_cols=293 Identities=14% Similarity=0.145 Sum_probs=134.6
Q ss_pred HHHHHHHHcCCCCChhh--HHHHHHHHHhccChhHHHHHHHHHHhCCCCC-CCcchhhhhhhHHHhhcCHHHHHHHHHhc
Q 010994 48 PELDNWVKNGNKVRVGE--LQRIIRDLRKRKRFSQALEVSDWMNRKGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNL 124 (496)
Q Consensus 48 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 124 (496)
.+++.+.+.|..++... ..+.+...+..|+.+-+..+++ .+... .....-...+...+..|+.+...-+++.-
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence 35666666666554332 2344555667777655444443 33111 11111223466677788887777776652
Q ss_pred hhcC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC
Q 010994 125 KDDE-KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL---STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD 200 (496)
Q Consensus 125 ~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 200 (496)
.... .+..-+ +.+...++.|+.+.+..+++ .|..+ +...++.| ...+..|+. ++.+.+.+.|..++
T Consensus 104 a~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~~~~ 173 (437)
T 1n11_A 104 ANPNLATTAGH-TPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPL-HVAAKYGKV----RVAELLLERDAHPN 173 (437)
T ss_dssp CCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHH-HHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred CCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHH-HHHHHcCCH----HHHHHHHhCCCCCC
Confidence 2211 122112 23444556788776655554 33322 22222333 333455554 45566666666554
Q ss_pred hhh--HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc---chH
Q 010994 201 NFS--YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG---IGY 275 (496)
Q Consensus 201 ~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~ 275 (496)
... -.+.+...+..|+.+-+.-+++.-. .... ++...++ .+...+..|+.+-+..+++ .|..++. .-.
T Consensus 174 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~-~~~~g~t-~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~ 246 (437)
T 1n11_A 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHS-PAWNGYT-PLHIAAKQNQVEVARSLLQ----YGGSANAESVQGV 246 (437)
T ss_dssp CCCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCC-CCTTCCC-HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCC
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCC-cCCCCCC-HHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCC
Confidence 321 1123444556677765444433221 1111 2222222 3445566777765555554 3443332 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---ccHHHHH
Q 010994 276 NFLISLYASLGNKSEVLRLWDLEKTACKRYI---NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT---RIPNAVI 349 (496)
Q Consensus 276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~ 349 (496)
+. +...+..|+.+-+..+++ .+..++ ....+. +...+..|..+-+..++ +.|..++. ...+. +
T Consensus 247 t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~-L 315 (437)
T 1n11_A 247 TP-LHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTP-LHLVAQEGHVPVADVLI----KHGVMVDATTRMGYTP-L 315 (437)
T ss_dssp CH-HHHHHHTTCHHHHHHHHT----TTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCCH-H
T ss_pred CH-HHHHHHCCCHHHHHHHHh----cCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCCH-H
Confidence 23 333456666655444433 333222 222233 33344567766544444 44443332 22233 3
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCCC
Q 010994 350 IGYCNNGLVQNAEAILEDLVEKGKATT 376 (496)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~ 376 (496)
...+..|+.+-+. .+.+.|..++
T Consensus 316 ~~A~~~g~~~~v~----~Ll~~gad~n 338 (437)
T 1n11_A 316 HVASHYGNIKLVK----FLLQHQADVN 338 (437)
T ss_dssp HHHHHSSCSHHHH----HHHHTTCCTT
T ss_pred HHHHHcCcHHHHH----HHHhcCCCCC
Confidence 4445677766444 3445555443
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.94 E-value=96 Score=26.18 Aligned_cols=183 Identities=10% Similarity=0.001 Sum_probs=80.0
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010994 177 SKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKA 256 (496)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 256 (496)
+..|+. ++++.+.+.|..++...-.+.+...+..|+.+-+..+++.=. ..+. .+..-.+ .+...+..|+.+-+
T Consensus 39 ~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~-~d~~g~t-~L~~A~~~g~~~~v 111 (285)
T 3kea_A 39 IADNNV----RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGL-DDSQ-FDDKGNT-ALYYAVDSGNMQTV 111 (285)
T ss_dssp HHTTCH----HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTC-CTTC-CCTTSCC-HHHHHHHTTCHHHH
T ss_pred HHcCCH----HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCC-cCCCCCc-HHHHHHHcCCHHHH
Confidence 345554 344455555544443322334455566677765555554321 2111 1221122 23344556666555
Q ss_pred HHHHHHHHHhcccCccc---hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010994 257 SDVLKKAEERLEQKDGI---GYNFLISLYASLGNKSEVLRLWDLEKTACKRY-INRDYITMLEALMKLGEHEEAEKVLKE 332 (496)
Q Consensus 257 ~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 332 (496)
..+++. |..++.. -+...+...+..|+.+-+..+++ .+..+ +...-.+.+...+..|..+-+..+++.
T Consensus 112 ~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 112 KLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS----EIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT----TSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 444443 4444332 22334444455666554433333 33322 211223344445566777666666554
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhH
Q 010994 333 WELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNS 379 (496)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 379 (496)
-..... .+..-.+..+...+..|+. ++.+.+.+.|..|+...
T Consensus 184 gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 184 MTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred CCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 333221 1222222223333344543 34444556666555543
No 293
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.57 E-value=1.1e+02 Score=26.58 Aligned_cols=181 Identities=11% Similarity=0.017 Sum_probs=105.3
Q ss_pred HHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHH
Q 010994 70 RDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDK 149 (496)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 149 (496)
+.....|++-+|.+.++.+.. .|.+.+++++|+.++.. -...+.+.|+...
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~----------------Ry~~~~~~~eAidlL~~-------------ga~~ll~~~Q~~s 71 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIAN----------------RYVRSKSYEHAIELISQ-------------GALSFLKAKQGGS 71 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHH-------------HHHHHHHTTCHHH
T ss_pred HHHhhccChHHHHHHHHHHHH----------------HHHHhcCHHHHHHHHHH-------------HHHHHHHCCCcch
Confidence 344556777777777666544 35566777777766432 2344556677766
Q ss_pred HHHH----HHHHHHCCCCCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHH----CC--CCCChhhHHHHHHHHhhcCChH
Q 010994 150 ALSH----FRKMKEMGIALSTLTYNDIMCLYSKTGQYE-KVPDVLTEMKA----KN--IFPDNFSYRICINSYGARSDLE 218 (496)
Q Consensus 150 A~~~----~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~----~~--~~p~~~~~~~li~~~~~~~~~~ 218 (496)
|-++ ++...+.+++++......++..+.....-+ .-.++.+.+++ .| ..-++.....+...|.+.|++.
T Consensus 72 a~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~ 151 (312)
T 2wpv_A 72 GTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVY 151 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHH
Confidence 6554 566677788889888888888877644322 23455555543 22 2235666777888899999998
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994 219 GMEIILREMESQPHIVLDWSTYASAAHFYIKA---NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW 295 (496)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 295 (496)
+|...|-.- -..+...+..++.-+... |...++- ...-.+ +--|...|+...|..++
T Consensus 152 ~A~~H~i~~-----~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra-VL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 152 EAERYFMLG-----THDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL-VFNYLFISNISFAHESK 211 (312)
T ss_dssp HHHHHHHTS-----CHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH-HHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHhC-----CCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH-HHHHHHhcCHHHHHHHH
Confidence 888766411 111344454444444333 3333221 111112 22344567777777777
Q ss_pred HHHH
Q 010994 296 DLEK 299 (496)
Q Consensus 296 ~~~~ 299 (496)
+...
T Consensus 212 ~~f~ 215 (312)
T 2wpv_A 212 DIFL 215 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 294
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=53.19 E-value=96 Score=27.29 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHH
Q 010994 130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTL---TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRI 206 (496)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 206 (496)
|..-++. +...+..|+.+.+..++ +.|..++.. .++.|.. .+..|+. ++.+.+.+.|..++...-.+
T Consensus 17 d~~g~t~-L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~-A~~~g~~----~~v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEK-IHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHL-ACKFGCV----DTAKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHH-HHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHH-HHHHCCH----HHHHHHHHHCCCCCCBTTBC
T ss_pred CCCCCCH-HHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHH-HHHcCCH----HHHHHHHHCCCCccccCCCC
Confidence 3433333 33344556655444443 344443322 2223322 2333443 33344444444333322222
Q ss_pred HHHHHhhcCChHHHHHHHHH
Q 010994 207 CINSYGARSDLEGMEIILRE 226 (496)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~ 226 (496)
.+...+..|+.+-+..+++.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 33334455666665555554
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.48 E-value=45 Score=24.34 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHh
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS--VQDVEAFVAALRT 445 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~ 445 (496)
....++.-|...|+.++|.++++++.. ...-...+...+..++-+.++ .+....++..+.+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~------p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~ 71 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV------PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 71 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC------GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC------CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 567888999999999999999998732 111112234444455555432 2445556665554
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.83 E-value=93 Score=24.81 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 392 KTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
...++.++|..|.. .|+--. ...|......+...|++.+|.++|+.-.+
T Consensus 94 ~~~~p~~if~~L~~-----~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 94 NFHESENTFKYMFN-----KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp CHHHHHHHHHHHHH-----HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35577777777766 444433 34555666666666777777777765444
No 297
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=48.33 E-value=71 Score=26.01 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=34.3
Q ss_pred CCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 010994 26 RINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKG 92 (496)
Q Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 92 (496)
..+...|...|.+-+.+...+..++..+.+.|.--|.......+....+.+.+ ....+-..+.++|
T Consensus 75 ~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KG 140 (221)
T 3d5l_A 75 MRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKG 140 (221)
T ss_dssp CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcC
Confidence 34444555555555554455555666665556655555555555555442222 2344455555666
No 298
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.32 E-value=82 Score=23.44 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCh
Q 010994 155 RKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL 217 (496)
Q Consensus 155 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 217 (496)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345667777554433 34455555666777888888887776556666655555666655543
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.22 E-value=95 Score=24.14 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=7.8
Q ss_pred HHHHHHHHhcCCCCC
Q 010994 362 EAILEDLVEKGKATT 376 (496)
Q Consensus 362 ~~~~~~~~~~~~~p~ 376 (496)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555444
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.78 E-value=80 Score=23.16 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=37.9
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhcC-CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCh
Q 010994 156 KMKEMGIALSTLTYNDIMCLYSKTG-QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL 217 (496)
Q Consensus 156 ~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 217 (496)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35667777555443 3455555555 6778888888888876666666655555556555543
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.28 E-value=57 Score=24.65 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHh
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS--VQDVEAFVAALRT 445 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~ 445 (496)
....++.-|...|+.++|.++++++.. ...-...+...+..++-+.++ .+.+..++..+.+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~------p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV------PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC------GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC------CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 567888999999999999999988732 111112233444445554333 2345555655543
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.22 E-value=88 Score=23.47 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=38.6
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCh
Q 010994 155 RKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL 217 (496)
Q Consensus 155 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 217 (496)
+.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456777764433 3345556666667788888888888776666666655566666665544
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.68 E-value=51 Score=28.52 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHH
Q 010994 346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK--TERGFQCMKAALS 405 (496)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 405 (496)
..++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 46677777778888888888777532111 12233333344443322 2334555555554
No 304
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.62 E-value=1.1e+02 Score=24.35 Aligned_cols=18 Identities=0% Similarity=-0.237 Sum_probs=8.4
Q ss_pred hHHHhhcCHHHHHHHHHh
Q 010994 106 DLIGRVHGFLSAESYFSN 123 (496)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~ 123 (496)
...++.|+.+....++..
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334444555554444443
No 305
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=45.25 E-value=81 Score=26.29 Aligned_cols=20 Identities=5% Similarity=0.177 Sum_probs=11.5
Q ss_pred HhcCCCCcHHHHHHHHHHCC
Q 010994 177 SKTGQYEKVPDVLTEMKAKN 196 (496)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~ 196 (496)
++.|+.+.+..+++.....+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 44566666666666555444
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.17 E-value=81 Score=23.50 Aligned_cols=59 Identities=8% Similarity=0.000 Sum_probs=33.7
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 156 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 156 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 45566666554432 3344444445 66777777777776655565555555555555553
No 307
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=44.67 E-value=56 Score=26.45 Aligned_cols=19 Identities=11% Similarity=-0.188 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 010994 317 LMKLGEHEEAEKVLKEWEL 335 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~ 335 (496)
....|+...+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555543
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.42 E-value=94 Score=23.32 Aligned_cols=62 Identities=8% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcC-CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCh
Q 010994 155 RKMKEMGIALSTLTYNDIMCLYSKTG-QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL 217 (496)
Q Consensus 155 ~~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 217 (496)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667776554443 3444444555 5667888888887776555666655555566555543
No 309
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=44.04 E-value=70 Score=24.57 Aligned_cols=26 Identities=4% Similarity=0.045 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHH
Q 010994 201 NFSYRICINSYGARSDLEGMEIILRE 226 (496)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~ 226 (496)
..+|.-++..+.+...+-.....|+.
T Consensus 156 ~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 156 IVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp EECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred cEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 34566666666555555555555543
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.75 E-value=90 Score=32.25 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=33.1
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994 348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL 404 (496)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 404 (496)
++..+...|..+-|.++. .. ++.++..--.+..+|...|++++|.++|+++.
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555666677766554432 22 22244433456778888899999999998865
No 311
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=42.15 E-value=1.3e+02 Score=24.00 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=27.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 010994 243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
.+...+..|+.+....+++.-.......+..-++.+ ...+..|+.+-+..+++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVEFLLQ 61 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHHHHHHH
Confidence 455667788888777777652221111233333333 33455666555444443
No 312
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=42.02 E-value=1.1e+02 Score=23.72 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=28.0
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccCc-----------------cchHHHHHHHHHhcCCHHHHHHHHH
Q 010994 246 FYIKANLIDKASDVLKKAEERLEQKD-----------------GIGYNFLISLYASLGNKSEVLRLWD 296 (496)
Q Consensus 246 ~~~~~~~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~ 296 (496)
+|-+..++..|...++.+.+..+..| ...|+.+...+.+.|+.++|+..+.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 34455555555555555554333221 2335556666666777777776665
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.77 E-value=47 Score=28.72 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC----CcHHHHHHHHHhCCCCCC
Q 010994 420 ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG----KGVDELLDSMKADGIDED 483 (496)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~a~~~~~~m~~~g~~p~ 483 (496)
...++.-|...|+.++|.+.++.+....-....+...+..++-+.+ +....++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 4466777778889999988888775311111233444444555443 234466666665555443
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.24 E-value=84 Score=25.56 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC
Q 010994 148 DKALSHFRKMKEMGIALS-TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP 199 (496)
Q Consensus 148 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 199 (496)
+.+..+|..|..+||--. ...|......+...|++.+|..+|+.-++++-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345556666655554332 2334555555555666666666666655554444
No 315
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.39 E-value=74 Score=20.64 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=34.8
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhcC-CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 156 KMKEMGIALSTLTYNDIMCLYSKTG-QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 156 ~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556666655544 34445555444 566677777777766555555565555555555543
No 316
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=39.31 E-value=3.3e+02 Score=27.89 Aligned_cols=156 Identities=10% Similarity=0.009 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcC----CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHH
Q 010994 311 ITMLEALMKLGE---HEEAEKVLKEWELSG----NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVV 383 (496)
Q Consensus 311 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 383 (496)
..++...|..|. .+.|.+.|+.....+ +.||. -..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 346666777776 456777887776532 33443 3444444556677766667777776642 44455677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHH----HHhcCCCCHHHHHHHH
Q 010994 384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD-EGSVQDVEAFVAA----LRTVIPMNRQMYHAFI 458 (496)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~----~~~~~~~~~~~~~~l~ 458 (496)
+.+++...+.+...+++..++. ...+++.. ... ++.+... ....+.|.+++.. +.+....+...+..++
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~----~~~ir~qd-~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i 838 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLN----PDLIRKQD-ATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLI 838 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTC----TTTSCGGG-HHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhC----CCCCchhh-HHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 8888888887777777776653 11233322 222 2233322 1223344444432 2222333445567777
Q ss_pred HHHHhCC--CcHHHHHHHHHh
Q 010994 459 KANIRNG--KGVDELLDSMKA 477 (496)
Q Consensus 459 ~~~~~~g--~~a~~~~~~m~~ 477 (496)
......- ++-++-++...+
T Consensus 839 ~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 839 QGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHHHTTCCSHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHh
Confidence 7766654 344455555544
No 317
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.13 E-value=1.1e+02 Score=26.78 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=45.1
Q ss_pred ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcc-hhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHH
Q 010994 61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPC-DHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLN 139 (496)
Q Consensus 61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~ 139 (496)
|..-++ .+...+..|+.+-+..++ +.+......+ .-...+...+..|+.+.+.-+++.-.. ++...-.+.+.
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~g~t~L~ 89 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV--HSLWHGQKPIH 89 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC--CCCBTTBCHHH
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--ccccCCCCHHH
Confidence 444443 344445667665444444 4441111111 112235566677777776666655332 11111112334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 010994 140 CYVRQRQTDKALSHFRKMKEMGIA 163 (496)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~g~~ 163 (496)
..+..|+.+-+..+++.-...|..
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHhccccCCC
Confidence 445567777666666654444443
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.06 E-value=86 Score=25.81 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=31.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------HHHHHHHHHH--hcCCCCcHHHHHHHH
Q 010994 138 LNCYVRQRQTDKALSHFRKMKEMGIALSTL-------TYNDIMCLYS--KTGQYEKVPDVLTEM 192 (496)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~m 192 (496)
+...++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344556677777777777766666555533 2344444432 456666666666554
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.76 E-value=1e+02 Score=23.60 Aligned_cols=60 Identities=3% Similarity=-0.154 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHH-H-----HHhcCCCCcHHHHHHHHHH
Q 010994 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIAL--STLTYNDIMC-L-----YSKTGQYEKVPDVLTEMKA 194 (496)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~m~~ 194 (496)
|..-+..|- .|++-+|.++|+..=.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444443 499999999999886554444 4556667776 2 3456888888888877765
No 320
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.13 E-value=1.4e+02 Score=23.87 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=29.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccc--HHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994 314 LEALMKLGEHEEAEKVLKEWELSGNSYDTRI--PNAVIIGYCNNGLVQNAEAILEDLVE 370 (496)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (496)
+...++.|+.+-+.. +.+.|..++... -.+-+...+..|+.+.+.++.+.+.+
T Consensus 181 L~~A~~~~~~~~v~~----Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 181 LHIAARENRYDCVVL----FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTCHHHHHH----HHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHhHHHH----HHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455666554433 344555443321 12344455677888888888887765
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.78 E-value=1.9e+02 Score=29.82 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcC
Q 010994 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT----RIPNAVIIGYCNNG 356 (496)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 356 (496)
-|.-++..+-+.+.++.+.++-+...+.--..|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 3677888888889888888888887764222222 25666666666544
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.67 E-value=1.4e+02 Score=22.75 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHHHH-HHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC--CCCCChhhHHHHHHHHhhcCCh
Q 010994 148 DKALSHFRK-MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK--NIFPDNFSYRICINSYGARSDL 217 (496)
Q Consensus 148 ~~A~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~ 217 (496)
+.+.+-+.+ +.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444544443 56778886544 445667777777888899999999887 6666666655566666666654
No 323
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=36.37 E-value=80 Score=21.64 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHcCCCCChhhHHHH---HHHHHhccChhHHHHHHHHHHh
Q 010994 45 RIEPELDNWVKNGNKVRVGELQRI---IRDLRKRKRFSQALEVSDWMNR 90 (496)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~ 90 (496)
.+..++..|......|.......+ +..+.+.++.+++..+++++..
T Consensus 13 dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l~r 61 (97)
T 4fjo_A 13 DVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKR 61 (97)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 467788999988777766655444 4455667888888888776654
No 324
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=36.07 E-value=49 Score=20.17 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994 254 DKASDVLKKAEERLEQKDGIGYNFLISLY 282 (496)
Q Consensus 254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 282 (496)
++|.+.|.+|....-.++..+|.-.+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555554443335555666555555
No 325
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=35.47 E-value=2e+02 Score=24.09 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-
Q 010994 278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL-MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN- 355 (496)
Q Consensus 278 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 355 (496)
+....-+.+++++..+..+.+...+...+..-.+.+-.+| ...|....+.+++..+.+..-.....-...++..|.+.
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr~kI 116 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMV 116 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHHHHH
Q ss_pred -CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh-----------------HHHHHHHHHHHHhhhcCCCCCCCH
Q 010994 356 -GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT-----------------ERGFQCMKAALSVYVEGKGWKPDP 417 (496)
Q Consensus 356 -g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~~~~~~~~~~~~~p~~ 417 (496)
..+..--.-.-.+++..+.|+..+-.+-+-.+--.|++ +.+.+.|+++.+ +....++|+.
T Consensus 117 e~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~--iA~~~L~pTh 194 (261)
T 3ubw_A 117 ETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASD--IAMTELPPTH 194 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH--HHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHH--HHHhhCCCCC
Q ss_pred HHHHHHHHHHh-----ccCCHHHHHHHHHHHHh
Q 010994 418 KVITSILSKLG-----DEGSVQDVEAFVAALRT 445 (496)
Q Consensus 418 ~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~ 445 (496)
.+...|.--|+ -.++.++|.++-+..-+
T Consensus 195 PirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 195 PIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.53 E-value=44 Score=29.49 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 010994 135 GALLNCYVRQRQTDKALSHFRKMK 158 (496)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~ 158 (496)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 456666777777777777776664
No 327
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.03 E-value=2e+02 Score=23.87 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=67.7
Q ss_pred CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994 340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KTERGFQCMKAALSVYVEGKGWKPDPK 418 (496)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~ 418 (496)
++..+-...+.++...|+.+ +...+..+.+. ++...-...+.++...| ....+...+..++. .++..
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~--------d~~~~ 207 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFAININKYDNSDIRDCFVEMLQ--------DKNEE 207 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT--------CSCHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc--------CCCHH
Confidence 34444444555555555432 33333333332 34444444444454444 23455555555443 35666
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHhCCCCCChhHHHHHHhhh
Q 010994 419 VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSMKADGIDEDEETKEILVCTM 494 (496)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g~~p~~~t~~~l~~~~ 494 (496)
+-...+.++.+.|+......+.+.+.+ ++ .-...+.++.+.| .++...+.++.+.. +|.......+.++
T Consensus 208 vR~~A~~aL~~~~~~~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~~~~~~L~~~l~~~--~~~~~~~~~~~~l 277 (280)
T 1oyz_A 208 VRIEAIIGLSYRKDKRVLSVLCDELKK---NT--VYDDIIEAAGELGDKTLLPVLDTMLYKF--DDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHTS---SS--CCHHHHHHHHHHCCGGGHHHHHHHHTTS--SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhhHHHHHHHhcC---cc--HHHHHHHHHHhcCchhhhHHHHHHHhcC--CCcHHHHHHHHHh
Confidence 666677777777765444444444433 22 2234456666777 67777777766542 4444444444443
No 328
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=33.83 E-value=1.6e+02 Score=22.48 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 010994 27 INKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKG 92 (496)
Q Consensus 27 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 92 (496)
.+...|...|.+-|.+...+..++..+...|.--|.......+....+.| .....+-..+.+.|
T Consensus 32 ~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~--~G~~~I~~eL~~KG 95 (162)
T 3dfg_A 32 HSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSG--YGPLHIRAELGTHG 95 (162)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT--CCHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc--ccHHHHHHHHHHcC
Confidence 33444445555444444445555555555555444444444444443322 12234444555555
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.32 E-value=1.5e+02 Score=22.26 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010994 277 FLISLYASLGNKSEVLRLWDLE 298 (496)
Q Consensus 277 ~l~~~~~~~~~~~~a~~~~~~~ 298 (496)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444455555555555443
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.78 E-value=1.4e+02 Score=24.12 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 010994 136 ALLNCYVRQRQTDKALSHFRKMKEM 160 (496)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~ 160 (496)
..+-.|.+.|.+++|.+++++....
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC
Confidence 3455566777777777777766554
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.78 E-value=1.6e+02 Score=22.41 Aligned_cols=53 Identities=4% Similarity=0.023 Sum_probs=33.8
Q ss_pred HhcCChHHHHHHHHHHHHhcccC--ccchHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 010994 248 IKANLIDKASDVLKKAEERLEQK--DGIGYNFLIS-L-----YASLGNKSEVLRLWDLEKT 300 (496)
Q Consensus 248 ~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 300 (496)
...|++-+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34478888888888776554444 4455666666 2 2456777777777776544
No 332
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.01 E-value=90 Score=25.38 Aligned_cols=47 Identities=6% Similarity=0.023 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 359 QNAEAILEDLVEKGKAT-TPNSWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 359 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
+.+..+|..|..+|+-- -...|......+...|++.+|..+|+..++
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666555432 233556666666666666666666666665
No 333
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.77 E-value=2.1e+02 Score=23.30 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCh------hhHHHHHHHHhhc---CChHHHHHHHHHhhcCCCCC------
Q 010994 170 NDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN------FSYRICINSYGAR---SDLEGMEIILREMESQPHIV------ 234 (496)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~------ 234 (496)
.+.+...++.|+.+.+..+++.+.+.|..++. ..-.+.+...+.. |+.+-+..+++.-.......
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Q ss_pred -----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccch---------------HHHHHHHHHhcCCHHHHHHH
Q 010994 235 -----LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG---------------YNFLISLYASLGNKSEVLRL 294 (496)
Q Consensus 235 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~ 294 (496)
.+..+ .+...+..|+.+-+..+++. |..++... -...+...+..|+.+-+.-+
T Consensus 83 ~~~~d~~g~t---~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 155 (256)
T 2etb_A 83 CTDEFYQGHS---ALHIAIEKRSLQCVKLLVEN----GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155 (256)
T ss_dssp CCSTTTTTCC---HHHHHHHTTCHHHHHHHHHT----TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred cccccccCCC---HHHHHHHcCCHHHHHHHHHc----CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Q ss_pred HH---HHHhhcCCCCchhHHHHHHHHHhcCCHHH-------HHHHHHHHHhcC-------CCCCcccHHHHHHHHHhcCc
Q 010994 295 WD---LEKTACKRYINRDYITMLEALMKLGEHEE-------AEKVLKEWELSG-------NSYDTRIPNAVIIGYCNNGL 357 (496)
Q Consensus 295 ~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~ 357 (496)
++ .-..... .+..-.+.+..++.......+ ..+++-+.-..- -..|..-.+.+..+ ++.|+
T Consensus 156 l~~~~~ga~~n~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A-~~~g~ 233 (256)
T 2etb_A 156 LENPHQPASLEA-TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA-AKEGK 233 (256)
T ss_dssp HHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH-HHTTC
T ss_pred HhccccCCCcCc-cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH-HHhCC
Q ss_pred hhHHHHHHHH
Q 010994 358 VQNAEAILED 367 (496)
Q Consensus 358 ~~~a~~~~~~ 367 (496)
.+-+..+++.
T Consensus 234 ~~~v~~Ll~~ 243 (256)
T 2etb_A 234 IEIFRHILQR 243 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
No 334
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.65 E-value=1.5e+02 Score=21.54 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010994 277 FLISLYASLGNKSEVLRLWDLE 298 (496)
Q Consensus 277 ~l~~~~~~~~~~~~a~~~~~~~ 298 (496)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444555555555555443
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.87 E-value=1.2e+02 Score=22.00 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994 172 IMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS 215 (496)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 215 (496)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33344444445555666666655544444444444444444444
No 336
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=30.71 E-value=1.5e+02 Score=23.80 Aligned_cols=41 Identities=7% Similarity=0.098 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 010994 184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILRE 226 (496)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 226 (496)
.+..+|..+-..| -...+|.-++..+.+...+-.....+..
T Consensus 174 ~~~~~f~~~D~d~--dG~Is~~EF~~~~~~~~~l~~~l~~~~~ 214 (224)
T 1s1e_A 174 HVDVFFQKMDKNK--DGIVTLDEFLESCQEDDNIMRSLQLFQN 214 (224)
T ss_dssp HHHHHHHHHCTTC--SSCEEHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC--CCcEeHHHHHHHHHhCHHHHHHhcCCCC
Confidence 3555555553322 1235677777777665555455554433
No 337
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=30.55 E-value=78 Score=22.91 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHHcCCCCChhhHHHH---HHHHHhccChhHHHHHHHHHHh
Q 010994 44 TRIEPELDNWVKNGNKVRVGELQRI---IRDLRKRKRFSQALEVSDWMNR 90 (496)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~ 90 (496)
..+..++..|......|.......+ +..+.+.++.+++..+++++..
T Consensus 39 ~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 39 NDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 3567789999987666766555444 4555667888888888777654
No 338
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=30.52 E-value=1.2e+02 Score=25.05 Aligned_cols=152 Identities=11% Similarity=0.046 Sum_probs=84.7
Q ss_pred CCCCCCCcHHHHHHHHHc--CCCCChhhHHHHHHHHHhccC-hhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHH
Q 010994 39 LGNPGTRIEPELDNWVKN--GNKVRVGELQRIIRDLRKRKR-FSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFL 115 (496)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (496)
.+.....+..++..+... ....+...+..++..+...+. ...+..+|..+-..+...++...+...+..+......+
T Consensus 86 ~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~ 165 (256)
T 2jul_A 86 TKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHE 165 (256)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHH
T ss_pred hCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHH
Confidence 344455667677766554 445666666666665533222 24566777777665544466666666665554434445
Q ss_pred HHHHHHHhchhcC---CCHHHHHHHHHHHH-hcC-----------CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 010994 116 SAESYFSNLKDDE---KTYQTYGALLNCYV-RQR-----------QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG 180 (496)
Q Consensus 116 ~A~~~~~~~~~~~---~~~~~~~~li~~~~-~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 180 (496)
....+|+.+-..+ -+..-+..++..+. ..| .-+.+..+|..+-..| ....+|.-+...+.+..
T Consensus 166 ~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~ 243 (256)
T 2jul_A 166 KLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDE 243 (256)
T ss_dssp HHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCH
Confidence 5666676654332 24444444443332 124 2355566666553321 13467888888888877
Q ss_pred CCCcHHHHHHHH
Q 010994 181 QYEKVPDVLTEM 192 (496)
Q Consensus 181 ~~~~a~~~~~~m 192 (496)
..-+++..|+.+
T Consensus 244 ~l~~~l~~~d~~ 255 (256)
T 2jul_A 244 NIMNSMQLFENV 255 (256)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHhhccc
Confidence 766677666654
No 339
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.20 E-value=1.1e+02 Score=23.35 Aligned_cols=17 Identities=6% Similarity=0.178 Sum_probs=6.7
Q ss_pred hcCchhHHHHHHHHHHh
Q 010994 354 NNGLVQNAEAILEDLVE 370 (496)
Q Consensus 354 ~~g~~~~a~~~~~~~~~ 370 (496)
..+..-.|.++++.+.+
T Consensus 44 ~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 44 HSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp SCCSCBCHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHh
Confidence 33333344444444433
No 340
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.08 E-value=1.3e+02 Score=20.54 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994 360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 360 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 391 (496)
.|.++.+++...|+.|+..+..-++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 35556666666667666666666666665554
No 341
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.94 E-value=1.1e+02 Score=22.63 Aligned_cols=46 Identities=7% Similarity=0.068 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994 171 DIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD 216 (496)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 216 (496)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444555555666666666665555555554444444444443
No 342
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.74 E-value=2e+02 Score=22.52 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCCh
Q 010994 165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDL 217 (496)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 217 (496)
|...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH
Confidence 4444444444444444422 2233333322 23444444444455444443
No 343
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.91 E-value=3.5e+02 Score=25.01 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994 215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL 294 (496)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 294 (496)
.+.+-|.++-.+. |++--...|..-.+.+...|++++|-++--.... |+-.+..|.+.+-..-...|+..-.+.+
T Consensus 343 ~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 4455555444333 3322334455555666677777777666554332 3334444554444443444555556666
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994 295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329 (496)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (496)
|..+.+.+. .+..--.-+++.-...|+.+-.++.
T Consensus 418 F~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 418 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHH
Confidence 665555543 3332222334444444554444433
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.69 E-value=1.7e+02 Score=21.64 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=29.6
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 010994 190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251 (496)
Q Consensus 190 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 251 (496)
+.+++.|++++.. -..++..+...+ .-.|.++++.+. +.+...+..|-..-+..+...|
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~-~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVR-KTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHH-hhCCCCCHhHHHHHHHHHHHCC
Confidence 3445556665543 233344444444 556777777776 4444455544333344444433
No 345
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.62 E-value=3.7e+02 Score=25.24 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=33.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CCCH--HHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 203 SYRICINSYGARSDLEGMEIILREMESQPHI-VLDW--STY-ASAAHFYIKANLIDKASDVLKKAEE 265 (496)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--~~~-~~li~~~~~~~~~~~a~~~~~~m~~ 265 (496)
.+|.+++.|...+.++.|..+..+.. -... .++. ..| ..+...+.-.+++.+|.+.+.....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35666666777777777777776664 2111 1111 111 1234555556677777666666544
No 346
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=28.61 E-value=1e+02 Score=22.10 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCC
Q 010994 431 GSVQDVEAFVAALRTV--IPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDE 482 (496)
Q Consensus 431 g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p 482 (496)
..+++|.+.+..+++. .-..+..||..+..+...= .+-.++|..+.+.++.|
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l~~FW~~iv~~~lgL 96 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGITL 96 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTCCS
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcCC
Confidence 3566777777777664 2246777888877775422 23356677777666643
No 347
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.47 E-value=1.9e+02 Score=21.80 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=22.4
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCC
Q 010994 436 VEAFVAALRTV--IPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDE 482 (496)
Q Consensus 436 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p 482 (496)
+..+|..|... ...-+..|......+-..| ++|.++|+.-.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455544332 2233344555555555555 45555555555555444
No 348
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=28.24 E-value=1.2e+02 Score=19.57 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010994 433 VQDVEAFVAALRTVIPMNRQMYHAFIKANI 462 (496)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 462 (496)
++.|..+++.++.....++..|...+....
T Consensus 4 ~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~ 33 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIMK 33 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 345555555555554445555555554443
No 349
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.24 E-value=2.2e+02 Score=22.56 Aligned_cols=19 Identities=11% Similarity=-0.164 Sum_probs=7.8
Q ss_pred HhcCChHHHHHHHHHHHHh
Q 010994 248 IKANLIDKASDVLKKAEER 266 (496)
Q Consensus 248 ~~~~~~~~a~~~~~~m~~~ 266 (496)
+..|+.+-+..+++.+.+.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~ 180 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSY 180 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHHHHhc
Confidence 3344444444444444333
No 350
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.22 E-value=2.8e+02 Score=23.71 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=54.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---chhHHHHHHH
Q 010994 243 AAHFYIKANLIDKASDVLKKAEERLEQK---DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI---NRDYITMLEA 316 (496)
Q Consensus 243 li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 316 (496)
-+...++.|+.+....++... +..+ |..-.+ .+...+..|+.+-+..+++ .+..++ ....+.+ ..
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~~---~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L-~~ 97 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTPL---NVNCHASDGRKST-PLHLAAGYNRVRIVQLLLQ----HGADVHAKDKGGLVPL-HN 97 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCTT---TTTCCCSSTTCCC-HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHH-HH
T ss_pred hHHHHHHcCCHHHHHHHHHhc---CCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCcHH-HH
Confidence 445556778887777776542 2222 222223 3344456677655544443 333222 2223333 33
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH
Q 010994 317 LMKLGEHEEAEKVLKEWELSGNSYDTR---IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTP 377 (496)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 377 (496)
.+..|+.+-+.. +.+.|..++.. .++. +...+..|+.+-+ +.+.+.|..|+.
T Consensus 98 A~~~g~~~iv~~----Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~~ 152 (351)
T 3utm_A 98 ACSYGHYEVTEL----LLKHGACVNAMDLWQFTP-LHEAASKNRVEVC----SLLLSHGADPTL 152 (351)
T ss_dssp HHHTTCHHHHHH----HHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHHTTCCTTC
T ss_pred HHHCCCHHHHHH----HHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHH----HHHHHcCCCCcc
Confidence 445666554443 34445444432 2233 3334556665543 344455555443
No 351
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=27.86 E-value=1.6e+02 Score=24.32 Aligned_cols=130 Identities=10% Similarity=0.072 Sum_probs=64.1
Q ss_pred CCcchhhhhhhHHHhh-cCHHHHHHHHHhchhcCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhHHH
Q 010994 96 FAPCDHAVQLDLIGRV-HGFLSAESYFSNLKDDEK---TYQTYGALLNCYVRQRQTDKALSHFRKMKEMG-IALSTLTYN 170 (496)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~ 170 (496)
++...+..++..+... ........+|..+...+. +..-+..++..+......++...+|+.+-..| -..+..-+.
T Consensus 109 I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~ 188 (256)
T 2jul_A 109 VDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEML 188 (256)
T ss_dssp EEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHH
T ss_pred CCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 4444455444443322 233456677776655432 33334444444433334455666666553221 112333344
Q ss_pred HHHHHHH-hcCC-----------CCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994 171 DIMCLYS-KTGQ-----------YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM 227 (496)
Q Consensus 171 ~l~~~~~-~~~~-----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 227 (496)
.++..+. ..|. -+.+..+|..+-..| -...++.-++..+.+...+-.+...|+.+
T Consensus 189 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 189 AIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 4443332 1131 122344444432221 13467888888888888888888887764
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.44 E-value=93 Score=22.62 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-..
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4566777777778899999999988877778888777788888877543
No 353
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.08 E-value=3e+02 Score=23.60 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC
Q 010994 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTL----TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD 200 (496)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 200 (496)
++.+...++.|+.+.+..++ +.|..+|.. -++.|..+ +..|+. ++.+.+.+.|..|+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~A-~~~g~~----~iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNA-VQMSRE----DIVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHH-HHTTCH----HHHHHHHHTTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHHH-HHcCCH----HHHHHHHHcCCchh
Confidence 44555566778876555444 445554422 23344333 344543 45555666665443
No 354
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.86 E-value=2.2e+02 Score=22.03 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC
Q 010994 147 TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP 199 (496)
Q Consensus 147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 199 (496)
.+....+++.+.+.|.--|..--...++...+.|.+ ....+-.++.+.|+.+
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH
Confidence 344556666677777664444444555555544433 3455666777777643
No 355
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.79 E-value=4e+02 Score=25.03 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994 237 WSTYASAAHFYIKANLIDKASDVLKK 262 (496)
Q Consensus 237 ~~~~~~li~~~~~~~~~~~a~~~~~~ 262 (496)
...+|.+++.|...+.++.|..+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 34455555555555555555555554
No 356
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.11 E-value=1.2e+02 Score=18.87 Aligned_cols=44 Identities=7% Similarity=0.073 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994 345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389 (496)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 389 (496)
++.++..++...-++.++..+.++.+.|.. +...|---...+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 456666666666677777777777777654 56666555555554
No 357
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.05 E-value=1.5e+02 Score=20.22 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=22.6
Q ss_pred CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH
Q 010994 356 GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERG 396 (496)
Q Consensus 356 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 396 (496)
.+.+.|.++++.+..+|. ..|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 356677777777766643 3566666666655554443
No 358
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.34 E-value=2.1e+02 Score=21.37 Aligned_cols=60 Identities=7% Similarity=-0.048 Sum_probs=31.6
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhhcC-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 010994 190 TEMKAKNIFPDNFSYRICINSYGARS-DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN 251 (496)
Q Consensus 190 ~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 251 (496)
+.+.+.|++++.. -..++..+...+ ..-.|.++++.+. +.+...+..|...-+..+...|
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLI-DLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCC
Confidence 3455667666543 233444555544 5556777777776 4444445555443444444444
No 359
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.18 E-value=64 Score=19.68 Aligned_cols=15 Identities=20% Similarity=0.167 Sum_probs=7.6
Q ss_pred cCChHHHHHHHHHhh
Q 010994 214 RSDLEGMEIILREME 228 (496)
Q Consensus 214 ~~~~~~a~~~~~~~~ 228 (496)
.|+++.|+..+-.|.
T Consensus 36 ~gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 36 RGNKDAAINSLLQMG 50 (59)
T ss_dssp TTCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHcCc
Confidence 345555555555554
No 360
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.09 E-value=2.5e+02 Score=22.10 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=5.5
Q ss_pred HhcCCHHHHHHHH
Q 010994 142 VRQRQTDKALSHF 154 (496)
Q Consensus 142 ~~~g~~~~A~~~~ 154 (496)
++.|+.+....++
T Consensus 10 ~~~g~~~~v~~Ll 22 (228)
T 2dzn_A 10 CMENEFFKVQELL 22 (228)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3444444444333
No 361
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=24.67 E-value=2.9e+02 Score=22.60 Aligned_cols=18 Identities=6% Similarity=-0.143 Sum_probs=8.1
Q ss_pred hhHHHhhcCHHHHHHHHH
Q 010994 105 LDLIGRVHGFLSAESYFS 122 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~ 122 (496)
+...+..|+.+.+..+++
T Consensus 40 L~~A~~~g~~~~v~~Ll~ 57 (261)
T 2xai_A 40 LHEACLGGHLSCVKILLK 57 (261)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 334444455544444443
No 362
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.45 E-value=79 Score=23.35 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994 134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE 183 (496)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 183 (496)
-..++..+...++.-.|.++++.+.+.+...+..|..--+..+...|-..
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34566777777778889999999988877778888777788888877553
No 363
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=24.41 E-value=1.6e+02 Score=22.18 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCC
Q 010994 432 SVQDVEAFVAALRTV--IPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGID 481 (496)
Q Consensus 432 ~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~ 481 (496)
.+++|.+.+..+++. .-..+..||..+..+...= .+-.++|+.+.+.++.
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcc
Confidence 455666666666553 1135566666666654322 2235556666555543
No 364
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.32 E-value=1.9e+02 Score=21.03 Aligned_cols=152 Identities=12% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHH--HHHHHH
Q 010994 205 RICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYN--FLISLY 282 (496)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~ 282 (496)
...+...+..|+.+.+..+++. . ...+......-.+.+.. +..|+.+-+..+++. |..++..... ..+...
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-E-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQ----GASPNVQDTSGTSPVHDA 75 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-T-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred chHHHHHHHhCCHHHHHHHHHh-h-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHH
Q 010994 283 ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAE 362 (496)
Q Consensus 283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (496)
+..|+.+-+.-+++ ...........-.+.+...+..|+.+-+..+++. ..+......-.+-+...+..|+.+-+.
T Consensus 76 ~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 76 ARTGFLDTLKVLVE--HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVD 150 (156)
T ss_dssp HHTTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred HHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHH
Q ss_pred HHHHHH
Q 010994 363 AILEDL 368 (496)
Q Consensus 363 ~~~~~~ 368 (496)
.+++.+
T Consensus 151 ~Ll~~~ 156 (156)
T 1bd8_A 151 ILQGHM 156 (156)
T ss_dssp HHHTTC
T ss_pred HHHhhC
No 365
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.05 E-value=1e+02 Score=22.05 Aligned_cols=41 Identities=5% Similarity=-0.096 Sum_probs=20.3
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994 188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME 228 (496)
Q Consensus 188 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 228 (496)
+|+.+....+.|+...--.-+..+...++++.|.++...+.
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444443333333334455666666666665554
No 366
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=23.95 E-value=2.4e+02 Score=21.46 Aligned_cols=25 Identities=4% Similarity=-0.040 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHH
Q 010994 201 NFSYRICINSYGARSDLEGMEIILR 225 (496)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~ 225 (496)
..++.-+...+.....+-.....+.
T Consensus 163 ~I~~~Ef~~~~~~~~~~~~~~~~~d 187 (190)
T 1fpw_A 163 YITLDEFREGSKVDPSIIGALNLYD 187 (190)
T ss_dssp EEEHHHHHHHHHSSTTHHHHHHHHH
T ss_pred cCcHHHHHHHHHhChHHHHHHhhcc
Confidence 3556666666666665555555443
No 367
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.68 E-value=1.7e+02 Score=19.73 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994 379 SWAVVAAGYFDAGKTERGFQCMKAALS 405 (496)
Q Consensus 379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 405 (496)
.+.-....+.+.|++++|+++.+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344556677788888888777776654
No 368
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.10 E-value=2.6e+02 Score=21.44 Aligned_cols=47 Identities=6% Similarity=0.024 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994 394 ERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRT 445 (496)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 445 (496)
+++.++|..|.. .|+--. ...|......+...|++.+|.++|+.-.+
T Consensus 77 ~~p~~if~~L~~-----~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 77 NEPLDMYSYLHN-----QGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp SCHHHHHHHHHH-----TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346666666655 444333 23444555555556666666666664443
No 369
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.09 E-value=2.5e+02 Score=23.19 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-------ChhHHHHHHHHHH--hcCCCCcHHHHHHH
Q 010994 137 LLNCYVRQRQTDKALSHFRKMKEMGIAL-------STLTYNDIMCLYS--KTGQYEKVPDVLTE 191 (496)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 191 (496)
.+...++.|+.+.+..+++...+.+... |..-++.|..++. +.|+.+-+..+++.
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 3444556788887777777766655332 3344455555554 24555555555544
No 370
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.35 E-value=2.5e+02 Score=20.95 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=25.5
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccC
Q 010994 368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG 431 (496)
Q Consensus 368 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 431 (496)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+ .+...+..|....+..+...|
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~-----~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQ-----KDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHH-----HSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHH-----hCCCCCHhhHHHHHHHHHHCC
Confidence 3445544322 223334444444445555566655554 233344444444445554444
No 371
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.17 E-value=2.3e+02 Score=20.59 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=27.3
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994 368 LVEKGKATTPNSWAVVAAGYFDAG-KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS 432 (496)
Q Consensus 368 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 432 (496)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+ .+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~-----~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALME-----AGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHH-----TTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHh-----hCCCCCHHHHHHHHHHHHHCCc
Confidence 34455554433 223333444443 45556666666655 3334455554444455544443
No 372
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.00 E-value=2e+02 Score=19.73 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=14.9
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 010994 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTG 180 (496)
Q Consensus 151 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 180 (496)
.++.+++...|+.|+..+..-++..|...+
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 344444444555555555555555554444
No 373
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.92 E-value=2.4e+02 Score=20.77 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=29.4
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994 333 WELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 391 (496)
+.+.|..++..= ..++..+...+..-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 444555433322 2344444444555556666666666555555555544555555554
No 374
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.80 E-value=1.8e+02 Score=18.70 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994 358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391 (496)
Q Consensus 358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 391 (496)
.-.+.++++.+.+.+...+..|....+..+...|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344455555544443334444444444444443
No 375
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=20.23 E-value=2.7e+02 Score=22.59 Aligned_cols=91 Identities=11% Similarity=0.206 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc-------C-----CH-HHHHHHHHHHHhc-CCCCHHHHHHHH
Q 010994 393 TERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE-------G-----SV-QDVEAFVAALRTV-IPMNRQMYHAFI 458 (496)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------g-----~~-~~a~~~~~~~~~~-~~~~~~~~~~l~ 458 (496)
.++|.+.+..+......=..-++|....+.+.++.-.. | ++ ...+.+|+.++++ .+++......+.
T Consensus 13 ~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~~ll~ 92 (225)
T 2lp4_A 13 FDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFL 92 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 45566666666553322222334555666665543211 1 11 1233455555554 455555444443
Q ss_pred HHHHhCCCcHHHHHHHHH---hCCCCCChhHHHHHH
Q 010994 459 KANIRNGKGVDELLDSMK---ADGIDEDEETKEILV 491 (496)
Q Consensus 459 ~~~~~~g~~a~~~~~~m~---~~g~~p~~~t~~~l~ 491 (496)
. +.+.+..|. ..|-.|+......+.
T Consensus 93 ~--------~~D~l~~~l~~~~~~~~~~~~~~~~l~ 120 (225)
T 2lp4_A 93 E--------TKDIMQEQLDAYKNSEEPDAASFEYIC 120 (225)
T ss_dssp H--------HHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 2 334444443 345566665554443
Done!