BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010995
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/440 (47%), Positives = 292/440 (66%), Gaps = 19/440 (4%)
Query: 23 KILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS- 81
K L+E GI D+LILEA+D IGGR+ F G++VELGA W+ GV G + NP+W + + +
Sbjct: 21 KRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTL 80
Query: 82 GLRTCFSDYTNARYNIYDRSGKIIPSGVA------ADSYKKAVESAIANLKNLEATNSNI 135
LR SD+ N+Y G + ADS ++ E A L + +I
Sbjct: 81 KLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSI 140
Query: 136 GEVIKAATELPSSPKTPLELAIDFILHDFEMAE---------VEPISTYVDFGEREFLVA 186
+ + P+ P TP+++ +D+ D+E AE P++T+ DFG+ + VA
Sbjct: 141 LAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVA 200
Query: 187 DERGYAHLLYKMAEEFLSTSD--GKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEAN 244
D+RGY ++Y +A ++L T D GKI+D RL+LNKVVRE+++S GVTVKTED VY A+
Sbjct: 201 DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSAD 260
Query: 245 YVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFI 304
YV++SAS+GVLQSDLI FKP LP WK AI + D+ VYTKIFLKFP KFWP G+EFF+
Sbjct: 261 YVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFL 320
Query: 305 YAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMF-GP 363
YA RRGYY WQ E YP +N+L+VT+T+ ES+R+E Q DE+T E M+VL+ MF G
Sbjct: 321 YASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK 380
Query: 364 DIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYV 423
D+P+ATDILVPRWW++RF +G++SN+P+ + + +RAPV ++FTGEHTSE +NGYV
Sbjct: 381 DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYV 440
Query: 424 HGGYLAGIDTGKAVVEKIRK 443
HG YL+GID+ + ++ +K
Sbjct: 441 HGAYLSGIDSAEILINCAQK 460
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/440 (47%), Positives = 291/440 (66%), Gaps = 19/440 (4%)
Query: 23 KILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS- 81
K L+E GI D+LILEA+D IGGR+ F G++VELGA W+ GV G + NP+W + + +
Sbjct: 21 KRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTL 80
Query: 82 GLRTCFSDYTNARYNIYDRSGKIIPSGVA------ADSYKKAVESAIANLKNLEATNSNI 135
LR SD+ N+Y G + ADS ++ E A L + +I
Sbjct: 81 KLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSI 140
Query: 136 GEVIKAATELPSSPKTPLELAIDFILHDFEMAE---------VEPISTYVDFGEREFLVA 186
+ + P+ P TP+++ +D+ D+E AE P++T+ DFG+ + VA
Sbjct: 141 LAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVA 200
Query: 187 DERGYAHLLYKMAEEFLSTSD--GKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEAN 244
D+RGY ++Y +A ++L T D GKI+D RL+LNKVVRE+++S GVTVKTED VY A+
Sbjct: 201 DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSAD 260
Query: 245 YVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFI 304
YV++SAS+GVLQSDLI FKP LP WK AI + D+ VYT IFLKFP KFWP G+EFF+
Sbjct: 261 YVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGKGREFFL 320
Query: 305 YAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMF-GP 363
YA RRGYY WQ E YP +N+L+VT+T+ ES+R+E Q DE+T E M+VL+ MF G
Sbjct: 321 YASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK 380
Query: 364 DIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYV 423
D+P+ATDILVPRWW++RF +G++SN+P+ + + +RAPV ++FTGEHTSE +NGYV
Sbjct: 381 DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYV 440
Query: 424 HGGYLAGIDTGKAVVEKIRK 443
HG YL+GID+ + ++ +K
Sbjct: 441 HGAYLSGIDSAEILINCAQK 460
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 189/426 (44%), Gaps = 47/426 (11%)
Query: 33 ILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
+ +LEA DRIGGRV ++K F GV+V GA V G +NPV + + G+
Sbjct: 382 VTVLEAKDRIGGRVWDDKSFKGVTVGRGA---QIVNGCINNPVALMCEQLGISM---HKF 435
Query: 92 NARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEAT------NSNIGEVIKAAT 143
R ++ G+I + D + A+ ++ + + I E+ KA
Sbjct: 436 GERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFI 495
Query: 144 ELPSSPKTPLE-LAIDFILHDFEMA---EVEPIST--------YVDFGEREFLVADERGY 191
+ + LE + F L + E A + +S + F L+ GY
Sbjct: 496 KESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTP--GY 553
Query: 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
+ ++ K+AE LD ++L V+ + +S + V V T DG Y A V+++
Sbjct: 554 SVIIEKLAEG---------LD--IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 602
Query: 252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
+ +LQ I F PPL + K +AI + KI L+FP +FW G +FF + +
Sbjct: 603 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 662
Query: 308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIP 366
+RG + + M+ S +L+ + V D++ L++ M L+++F ++P
Sbjct: 663 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 721
Query: 367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
+ T V RW + + + +YS + + I + G +FF GE T+ F V G
Sbjct: 722 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 781
Query: 426 GYLAGI 431
YL+G+
Sbjct: 782 AYLSGV 787
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 189/426 (44%), Gaps = 47/426 (11%)
Query: 33 ILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
+ +LEA DRIGGRV ++K F GV+V GA V G +NPV + + G+
Sbjct: 370 VTVLEAKDRIGGRVWDDKSFKGVTVGRGA---QIVNGCINNPVALMCEQLGISM---HKF 423
Query: 92 NARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEAT------NSNIGEVIKAAT 143
R ++ G+I + D + A+ ++ + + I E+ KA
Sbjct: 424 GERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFI 483
Query: 144 ELPSSPKTPLE-LAIDFILHDFEMA---EVEPIST--------YVDFGEREFLVADERGY 191
+ + LE + F L + E A + +S + F L+ GY
Sbjct: 484 KESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTP--GY 541
Query: 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
+ ++ K+AE LD ++L V+ + +S + V V T DG Y A V+++
Sbjct: 542 SVIIEKLAEG---------LD--IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 590
Query: 252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
+ +LQ I F PPL + K +AI + KI L+FP +FW G +FF + +
Sbjct: 591 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 650
Query: 308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIP 366
+RG + + M+ S +L+ + V D++ L++ M L+++F ++P
Sbjct: 651 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 709
Query: 367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
+ T V RW + + + +YS + + I + G +FF GE T+ F V G
Sbjct: 710 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 769
Query: 426 GYLAGI 431
YL+G+
Sbjct: 770 AYLSGV 775
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 189/426 (44%), Gaps = 47/426 (11%)
Query: 33 ILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
+ +LEA DRIGGRV ++K F GV+V GA V G +NPV + + G+
Sbjct: 362 VTVLEAKDRIGGRVWDDKSFKGVTVGRGA---QIVNGCINNPVALMCEQLGISM---HKF 415
Query: 92 NARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEAT------NSNIGEVIKAAT 143
R ++ G+I + D + A+ ++ + + I E+ KA
Sbjct: 416 GERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFI 475
Query: 144 ELPSSPKTPLE-LAIDFILHDFEMA---EVEPIST--------YVDFGEREFLVADERGY 191
+ + LE + F L + E A + +S + F L+ GY
Sbjct: 476 KESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTP--GY 533
Query: 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
+ ++ K+AE LD ++L V+ + +S + V V T DG Y A V+++
Sbjct: 534 SVIIEKLAEG---------LD--IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 582
Query: 252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
+ +LQ I F PPL + K +AI + KI L+FP +FW G +FF + +
Sbjct: 583 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 642
Query: 308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIP 366
+RG + + M+ S +L+ + V D++ L++ M L+++F ++P
Sbjct: 643 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 701
Query: 367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
+ T V RW + + + +YS + + I + G +FF GE T+ F V G
Sbjct: 702 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 761
Query: 426 GYLAGI 431
YL+G+
Sbjct: 762 AYLSGV 767
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
G++ + EL ++P + + L+ +D+ + E A P+ST + + D+
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 387
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
+ +HL + + + + LD +KLN VR++Q++ +G V T +Y
Sbjct: 388 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIY 445
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ + V+ + +GVL Q + F PPLP+WKT A+++ K+ L F FW P
Sbjct: 446 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 503
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
F + R + FW N Y +++ L GE+ + E D+ + +
Sbjct: 504 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 557
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
+L+ +FG +P + +V RW + + RGSYS +Y + I+ +
Sbjct: 558 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 617
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
P+ +FF GEHT + VHG L+G+
Sbjct: 618 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 648
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 32 DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
D+ +LEA DR+GGRV + G +LGA + G+GG NP+ ++ + +
Sbjct: 132 DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG---NPMAVVSKQVNMELA---KI 185
Query: 92 NARYNIYDRSGKIIP 106
+ +Y+ +G+ +P
Sbjct: 186 KQKCPLYEANGQAVP 200
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
G++ + EL ++P + + L+ +D+ + E A P+ST + + D+
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 387
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
+ +HL + + + + LD +KLN VR+++++ +G V T +Y
Sbjct: 388 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 445
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ + V+ + +GVL Q + F PPLP+WKT A+++ K+ L F FW P
Sbjct: 446 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 503
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
F + R + FW N Y +++ L GE+ + E D+ + +
Sbjct: 504 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 557
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
+L+ +FG +P + +V RW + + RGSYS +Y + I+ +
Sbjct: 558 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 617
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
P+ +FF GEHT + VHG L+G+
Sbjct: 618 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 648
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 32 DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
D+ +LEA DR+GGRV + G +LGA + G+GG NP+ ++ + +
Sbjct: 132 DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG---NPMAVVSKQVNMELA---KI 185
Query: 92 NARYNIYDRSGKIIP 106
+ +Y+ +G+ +P
Sbjct: 186 KQKCPLYEANGQAVP 200
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
G++ + EL ++P + + L+ +D+ + E A P+ST + + D+
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 387
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
+ +HL + + + + LD +KLN VR+++++ +G V T +Y
Sbjct: 388 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 445
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ + V+ + +GVL Q + F PPLP+WKT A+++ K+ L F FW P
Sbjct: 446 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 503
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
F + R + FW N Y +++ L GE+ + E D+ + +
Sbjct: 504 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 557
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
+L+ +FG +P + +V RW + + RGSYS +Y + I+ +
Sbjct: 558 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 617
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
P+ +FF GEHT + VHG L+G+
Sbjct: 618 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 648
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 32 DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
D+ +LEA DR+GGRV + G +LGA + G+GG NP+ ++ + +
Sbjct: 132 DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG---NPMAVVSKQVNMELA---KI 185
Query: 92 NARYNIYDRSGKIIP 106
+ +Y+ +G+ +P
Sbjct: 186 KQKCPLYEANGQAVP 200
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
G++ + EL ++P + + L+ +D+ + E A P+ST + + D+
Sbjct: 380 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 436
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
+ +HL + + + + LD +KLN VR+++++ +G V T +Y
Sbjct: 437 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 494
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ + V+ + +GVL Q + F PPLP+WKT A+++ K+ L F FW P
Sbjct: 495 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 552
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
F + R + FW N Y +++ L GE+ + E D+ + +
Sbjct: 553 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 606
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
+L+ +FG +P + +V RW + + RGSYS +Y + I+ +
Sbjct: 607 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 666
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
P+ +FF GEHT + VHG L+G+
Sbjct: 667 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 697
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 32 DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
D+ +LEA DR+GGRV + G +LGA + G+GG NP+ ++ + +
Sbjct: 181 DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG---NPMAVVSKQVNMELA---KI 234
Query: 92 NARYNIYDRSGKIIP 106
+ +Y+ +G+ +P
Sbjct: 235 KQKCPLYEANGQAVP 249
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
G++ + EL ++P + + L+ +D+ + E A P+ST + + D+
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 387
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
+ +HL + + + + LD +KLN VR+++++ +G V T +Y
Sbjct: 388 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 445
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ + V+ + +GVL Q + F PPLP+WKT A+++ K+ L F FW P
Sbjct: 446 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 503
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
F + R + FW N Y +++ L GE+ + E D+ + +
Sbjct: 504 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 557
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
+L+ +FG +P + +V RW + + RGSYS +Y + I+ +
Sbjct: 558 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 617
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
P+ +FF GEHT + VHG L+G+
Sbjct: 618 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 648
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 32 DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
D+ +LEA DR+GGRV + G +LGA + G+GG NP+ ++ + +
Sbjct: 132 DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG---NPMAVVSKQVNMELA---KI 185
Query: 92 NARYNIYDRSGKIIP 106
+ +Y+ +G+ +P
Sbjct: 186 KQKCPLYEANGQAVP 200
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
G++ + EL ++P + + L+ +D+ + E A P+ST + + D+
Sbjct: 502 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 558
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
+ +HL + + + + LD +KLN VR+++++ +G V T +Y
Sbjct: 559 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 616
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ + V+ + +GVL Q + F PPLP+WKT A+++ K+ L F FW P
Sbjct: 617 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 674
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
F + R + FW N Y +++ L GE+ + E D+ + +
Sbjct: 675 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 728
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
+L+ +FG +P + +V RW + + RGSYS +Y + I+ +
Sbjct: 729 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 788
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
P+ +FF GEHT + VHG L+G+
Sbjct: 789 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 819
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 32 DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
D+ +LEA DR+GGRV + G +LGA + G+GG NP+ ++ + +
Sbjct: 303 DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG---NPMAVVSKQVNMELA---KI 356
Query: 92 NARYNIYDRSGKIIP 106
+ +Y+ +G+ +P
Sbjct: 357 KQKCPLYEANGQAVP 371
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
G++ + EL ++P + + L+ +D+ + E A P+ST + + D+
Sbjct: 332 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 388
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
+ +HL + + + + LD +KLN VR+++++ +G V T +Y
Sbjct: 389 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 446
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ + V+ + +GVL Q + F PPLP+WKT A+++ K+ L F FW P
Sbjct: 447 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 504
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
F + R + FW N Y +++ L GE+ + E D+ + +
Sbjct: 505 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 558
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
+L+ +FG +P + +V RW + + RGSYS +Y + I+ +
Sbjct: 559 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 618
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
P+ +FF GEHT + VHG L+G+
Sbjct: 619 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 649
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 32 DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
D+ +LEA DR+GGRV + G +LGA + G+GG NP+ ++ + +
Sbjct: 133 DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG---NPMAVVSKQVNMELA---KI 186
Query: 92 NARYNIYDRSGKIIP 106
+ +Y+ +G+ +P
Sbjct: 187 KQKCPLYEANGQAVP 201
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
G++ + EL ++P + + L+ +D+ + E A P+ST + + D+
Sbjct: 384 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 440
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
+ +HL + + + + LD +KLN VR+++++ +G V T +Y
Sbjct: 441 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 498
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ + V+ + +GVL Q + F PPLP+WKT A+++ K+ L F FW P
Sbjct: 499 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 556
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
F + R + FW N Y +++ L GE+ + E D+ + +
Sbjct: 557 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 610
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
+L+ +FG +P + +V RW + + RGSYS +Y + I+ +
Sbjct: 611 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 670
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
P+ +FF GEHT + VHG L+G+
Sbjct: 671 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 701
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 32 DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPV 74
D+ +LEA DR+GGRV + G +LGA + G+GG NP+
Sbjct: 181 DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG---NPM 220
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
+ + I + + K + + FW C I E YT +++ P
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
N + + +++++ EE LK+ E+ + G + + L P W
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
++ G Y+ Y P Q +R PV I+F G T+ ++GY+ G AG +
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
++ + K E
Sbjct: 450 ILHAMGKIPE 459
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
+ + I + + K + + FW C I E YT +++ P
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
N + + +++++ EE LK+ E+ + G + + L P W
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
++ G Y+ Y P Q +R PV I+F G T+ ++GY+ G AG +
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
++ + K E
Sbjct: 450 ILHAMGKIPE 459
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L ++G+ ++++LEA DR+GGR +RN+K V+LG ++ G N + LA
Sbjct: 21 KLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVK--YVDLGGSYV----GPTQNRILRLAK 73
Query: 80 KSGLRT 85
+ GL T
Sbjct: 74 ELGLET 79
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 223 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 280
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
+ + I + + K + + FW C I E YT +++ P
Sbjct: 281 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 333
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
N + + +++++ EE LK+ E+ + G + + L P W
Sbjct: 334 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 388
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
++ G Y+ Y P Q +R PV I+F G T+ ++GY+ G AG +
Sbjct: 389 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 448
Query: 437 VVEKIRKDNE 446
++ + K E
Sbjct: 449 ILHAMGKIPE 458
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L ++G+ ++++LEA DR+GGR +RN+K V+LG ++ G N + LA
Sbjct: 20 KLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVK--YVDLGGSYV----GPTQNRILRLAK 72
Query: 80 KSGLRT 85
+ GL T
Sbjct: 73 ELGLET 78
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
+ + I + + K + + FW C I E YT +++ P
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
N + + +++++ EE LK+ E+ + G + + L P W
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
++ G Y+ Y P Q +R PV I+F G T+ ++GY+ G AG +
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
++ + K E
Sbjct: 450 ILHAMGKIPE 459
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L ++G+ ++++LEA DR+GGR +RN+K V+LG ++ G N + LA
Sbjct: 21 KLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVK--YVDLGGSYV----GPTQNRILRLAK 73
Query: 80 KSGLRT 85
+ GL T
Sbjct: 74 ELGLET 79
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
+ + I + + K + + FW C I E YT +++ P
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
N + + +++++ EE LK+ E+ + G + + L P W
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
++ G Y+ Y P Q +R PV I+F G T+ ++G++ G AG +
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGFMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
++ + K E
Sbjct: 450 ILHAMGKIPE 459
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L ++G+ ++++LEA DR+GGR +RN+K V+LG ++ G N + LA
Sbjct: 21 KLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVK--YVDLGGSYV----GPTQNRILRLAK 73
Query: 80 KSGLRT 85
+ GL T
Sbjct: 74 ELGLET 79
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
+ + I + + K + + FW C I E YT +++ P
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
N + + +++++ EE LK+ E+ + G + + L P W
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
++ G Y+ Y P Q +R PV I+F G T+ ++G++ G AG +
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGWMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
++ + K E
Sbjct: 450 ILHAMGKIPE 459
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 191/465 (41%), Gaps = 70/465 (15%)
Query: 24 ILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG----KESNPVWELAS 79
+LA G + +LEAS+R GGRVR + GW A +G ++ V E
Sbjct: 51 VLAGAG-HKVTVLEASERAGGRVRTHR------NSKEGWYANLGPMRIPEKHRIVREYIR 103
Query: 80 KSGLRTC-FS-DYTNARY---NIYDRSGKI-----------IPS---GVAADSYKKAVES 120
K GL FS + NA Y NI R G++ PS A Y++++ S
Sbjct: 104 KFGLNLNEFSQENDNAWYFIKNIRKRVGEVNKDPGLLKYPVKPSEEGKSAGQLYEESLGS 163
Query: 121 AIANLK--------NLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPI 172
A+ +LK N T S +IK P A+D I D +
Sbjct: 164 AVKDLKRTNCSYILNKYDTYSTKEYLIKEGNLSPG--------AVDMI-GDLLNEDSGYY 214
Query: 173 STYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT 232
++++ + + + A E+ + ++ M + L TS + ++ ++K N V ++Q + N VT
Sbjct: 215 VSFIESLKHDDIFAYEKRFDEIVGGMDQ--LPTSMYRAIEEKVKFNARVIKIQQNANQVT 272
Query: 233 VKTE----DGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLK 288
V + D A+YVI+ + + I F+PPLP K A+ TKIFL
Sbjct: 273 VTYQTPEKDTSSNTADYVIVCTTSRAARR--IQFEPPLPPKKQHALRSVHYRSGTKIFLT 330
Query: 289 FPCKFWPCS--PGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEA--- 343
KFW G + R YY N G +++ ++ +A
Sbjct: 331 CSSKFWEDDGIHGGKSTTDLPSRFIYYP----NHNFSTGVGVIIAYGIGDDANFFQALKF 386
Query: 344 QPDEETLKEAMEVLQDMFGPDIPN-ATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIR 402
+ + + + ++ + +I + ++ +W +++ G+ + + + ++
Sbjct: 387 KDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITTFTPYQFQRFSEALT 446
Query: 403 APVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNER 447
AP IFF GE+T+E HG + I +G + + +E+
Sbjct: 447 APQGRIFFAGEYTAE-----AHGWIDSTIKSGLTAARDVNRASEQ 486
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
+ + I + + K + + FW C I E YT +++ P
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
N + + +++++ EE LK+ E+ + G + + L P W
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
++ G Y+ Y P Q +R PV I+F G T+ ++G++ G AG +
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGHMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
++ + K E
Sbjct: 450 ILHAMGKIPE 459
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L ++G+ ++++LEA DR+GGR +RN+K V+LG ++ G N + LA
Sbjct: 21 KLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVK--YVDLGGSYV----GPTQNRILRLAK 73
Query: 80 KSGLRT 85
+ GL T
Sbjct: 74 ELGLET 79
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/478 (21%), Positives = 184/478 (38%), Gaps = 89/478 (18%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L E G+ +L+LEA DR+GGR +RNE V++G ++ G N + L+
Sbjct: 19 KLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVD--YVDVGGAYV----GPTQNRILRLSK 71
Query: 80 KSGLRT-------------------------------CFSDYTNARYNIYDRSGKIIPSG 108
+ G+ T + DY N I D GK IP+
Sbjct: 72 ELGIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTI-DNMGKEIPTD 130
Query: 109 VA-----ADSYKKAVESAIANLKNLEATNSNIGEV---IKAATELPSSPKTPLEL-AIDF 159
AD + K + + T + I +E P E+ A+ F
Sbjct: 131 APWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSE-------PHEVSALWF 183
Query: 160 ILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNK 219
+ + + I + + G+ ER + +++E + +L +++KLN
Sbjct: 184 LWYVKQCGGTTRIFSVTNGGQ-------ERKFVGGSGQVSERIMD-----LLGDQVKLNH 231
Query: 220 VVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV 279
V + S + + ++T + YE YVI +I + I F+P LP + + I++ +
Sbjct: 232 PVTHVDQSSDNIIIETLNHEHYECKYVI--NAIPPTLTAKIHFRPELPAERNQLIQRLPM 289
Query: 280 MVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT--LTNGE 337
K + + FW I E +++ P ++ + + +
Sbjct: 290 GAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISI---TLDDTKPDGSLPAIMGFILARK 346
Query: 338 SKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRFQRGSYSNY-P 390
+ R+ E K+ E+ + G + + L P W ++ G Y+ Y P
Sbjct: 347 ADRLAKLHKEIRKKKICELYAKVLG-----SQEALHPVHYEEKNWCEEQYSGGCYTAYFP 401
Query: 391 IISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERN 448
Q IR PV IFF G T+ +++GY+ G AG + V+ + K E++
Sbjct: 402 PGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKD 459
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/478 (21%), Positives = 184/478 (38%), Gaps = 89/478 (18%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L E G+ +L+LEA DR+GGR +RNE V++G ++ G N + L+
Sbjct: 30 KLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVD--YVDVGGAYV----GPTQNRILRLSK 82
Query: 80 KSGLRT-------------------------------CFSDYTNARYNIYDRSGKIIPSG 108
+ G+ T + DY N I D GK IP+
Sbjct: 83 ELGIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTI-DNMGKEIPTD 141
Query: 109 VA-----ADSYKKAVESAIANLKNLEATNSNIGEV---IKAATELPSSPKTPLEL-AIDF 159
AD + K + + T + I +E P E+ A+ F
Sbjct: 142 APWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSE-------PHEVSALWF 194
Query: 160 ILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNK 219
+ + + I + + G+ ER + +++E + +L +++KLN
Sbjct: 195 LWYVKQCGGTTRIFSVTNGGQ-------ERKFVGGSGQVSERIMD-----LLGDQVKLNH 242
Query: 220 VVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV 279
V + S + + ++T + YE YVI +I + I F+P LP + + I++ +
Sbjct: 243 PVTHVDQSSDNIIIETLNHEHYECKYVI--NAIPPTLTAKIHFRPELPAERNQLIQRLPM 300
Query: 280 MVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT--LTNGE 337
K + + FW I E +++ P ++ + + +
Sbjct: 301 GAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISI---TLDDTKPDGSLPAIMGFILARK 357
Query: 338 SKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRFQRGSYSNY-P 390
+ R+ E K+ E+ + G + + L P W ++ G Y+ Y P
Sbjct: 358 ADRLAKLHKEIRKKKICELYAKVLG-----SQEALHPVHYEEKNWCEEQYSGGCYTAYFP 412
Query: 391 IISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERN 448
Q IR PV IFF G T+ +++GY+ G AG + V+ + K E++
Sbjct: 413 PGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKD 470
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 19/246 (7%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 223 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 280
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNIL 329
+ + I + + K + + FW I E +++ P N
Sbjct: 281 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAA---TLDDTKPEGNYA 337
Query: 330 VVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRF 381
+ + +++++ EE LK+ E+ + G + + L P W ++
Sbjct: 338 AIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWCEEQY 392
Query: 382 QRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEK 440
G Y+ Y P Q +R PV I+F G T+ ++GY+ G AG + ++
Sbjct: 393 SGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHA 452
Query: 441 IRKDNE 446
+ K E
Sbjct: 453 MGKIPE 458
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/478 (21%), Positives = 184/478 (38%), Gaps = 89/478 (18%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L E G+ +L+LEA DR+GGR +RNE V++G ++ G N + L+
Sbjct: 19 KLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVD--YVDVGGAYV----GPTQNRILRLSK 71
Query: 80 KSGLRT-------------------------------CFSDYTNARYNIYDRSGKIIPSG 108
+ G+ T + DY N I D GK IP+
Sbjct: 72 ELGIETYKVNVSERLVQYVKGKTYPFRAAFPPVWNPIAYLDYNNLWRTI-DNMGKEIPTD 130
Query: 109 VA-----ADSYKKAVESAIANLKNLEATNSNIGEV---IKAATELPSSPKTPLEL-AIDF 159
AD + K + + T + I +E P E+ A+ F
Sbjct: 131 APWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSE-------PHEVSALWF 183
Query: 160 ILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNK 219
+ + + I + + G+ ER + +++E + +L +++KLN
Sbjct: 184 LWYVKQCGGTTRIFSVTNGGQ-------ERKFVGGSGQVSERIMD-----LLGDQVKLNH 231
Query: 220 VVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV 279
V + S + + ++T + YE YVI +I + I F+P LP + + I++ +
Sbjct: 232 PVTHVDQSSDNIIIETLNHEHYECKYVI--NAIPPTLTAKIHFRPELPAERNQLIQRLPM 289
Query: 280 MVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT--LTNGE 337
K + + FW I E +++ P ++ + + +
Sbjct: 290 GAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISI---TLDDTKPDGSLPAIMGFILARK 346
Query: 338 SKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRFQRGSYSNY-P 390
+ R+ E K+ E+ + G + + L P W ++ G Y+ Y P
Sbjct: 347 ADRLAKLHKEIRKKKICELYAKVLG-----SQEALHPVHYEEKNWCEEQYSGGCYTAYFP 401
Query: 391 IISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERN 448
Q IR PV IFF G T+ +++GY+ G AG + V+ + K E++
Sbjct: 402 PGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKD 459
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
+L +R+KL + V + +R V V+T + +YEA YVI ++I I F PPLP
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
+ + I + + K + + FW C I E YT +++ P
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
N + + +++++ EE LK+ E+ + G + + L P W
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
++ G Y+ Y P Q +R PV I+F G T+ ++G + G AG +
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGLMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
++ + K E
Sbjct: 450 ILHAMGKIPE 459
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L ++G+ ++++LEA DR+GGR +RN+K V+LG ++ G N + LA
Sbjct: 21 KLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVK--YVDLGGSYV----GPTQNRILRLAK 73
Query: 80 KSGLRT 85
+ GL T
Sbjct: 74 ELGLET 79
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 111/509 (21%), Positives = 178/509 (34%), Gaps = 142/509 (27%)
Query: 25 LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVW----ELAS 79
L +NGI+D L+LEA DR+GGR++ + G ++GA W +NP++ +L+
Sbjct: 27 LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHQDT---LTNPLFLEEAQLSL 83
Query: 80 KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
G D N Y I + G++ D K+ + + N S E +
Sbjct: 84 NDGRTRFVFDDDNFIY-IDEERGRV-------DHDKELLLEIVDN------EMSKFAE-L 128
Query: 140 KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMA 199
+ L S + +L + ++L R+FL D+ Y L +
Sbjct: 129 EFHQHLGVSDCSFFQLVMKYLLQ-----------------RRQFLTNDQIRYLPQLCRYL 171
Query: 200 E-------EFLSTSD---GKILDNRLKLN--KVVRELQHS-------------------R 228
E + LS D G N LN VV+ + S
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 229 NGVTVKTEDGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKCDV 279
VTV EDG VY A+YVI++ VL + I F+PPL +A +K
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHF 291
Query: 280 MVYTKIFLKFPCKFWP-------------------------------------------- 295
K+ +F W
Sbjct: 292 GALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSV 351
Query: 296 -CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQP--------- 345
C FF+ + G +F M+ P +N + + E QP
Sbjct: 352 TCWSQPLFFVNLSKSTGVASFMMLMQ--APLTNHIESIREDKERLFSFFQPVLNKIMKCL 409
Query: 346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV 405
D E + + M ++++ + P +I+V W + + RG+YS + V+ + A
Sbjct: 410 DSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS--ACFPGDDPVDMVVAMS 467
Query: 406 AG----IFFTGEHTSERFNGYVHGGYLAG 430
G I F GEHT G +G + +G
Sbjct: 468 NGQDSRIRFAGEHTIMDGAGCAYGAWESG 496
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 111/509 (21%), Positives = 178/509 (34%), Gaps = 142/509 (27%)
Query: 25 LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVW----ELAS 79
L +NGI+D L+LEA DR+GGR++ + G ++GA W +NP++ +L+
Sbjct: 27 LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDT---LTNPLFLEEAQLSL 83
Query: 80 KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
G D N Y I + G++ D K+ + + N S E +
Sbjct: 84 NDGRTRFVFDDDNFIY-IDEERGRV-------DHDKELLLEIVDN------EMSKFAE-L 128
Query: 140 KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMA 199
+ L S + +L + ++L R+FL D+ Y L +
Sbjct: 129 EFHQHLGVSDCSFFQLVMKYLLQ-----------------RRQFLTNDQIRYLPQLCRYL 171
Query: 200 E-------EFLSTSD---GKILDNRLKLN--KVVRELQHS-------------------R 228
E + LS D G N LN VV+ + S
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 229 NGVTVKTEDGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKCDV 279
VTV EDG VY A+YVI++ VL + I F+PPL +A +K
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHF 291
Query: 280 MVYTKIFLKFPCKFWP-------------------------------------------- 295
K+ +F W
Sbjct: 292 GALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSV 351
Query: 296 -CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQP--------- 345
C FF+ + G +F M+ P +N + + E QP
Sbjct: 352 TCWSQPLFFVNLSKSTGVASFMMLMQ--APLTNHIESIREDKERLFSFFQPVLNKIMKCL 409
Query: 346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV 405
D E + + M ++++ + P +I+V W + + RG+YS + V+ + A
Sbjct: 410 DSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS--ACFPGDDPVDMVVAMS 467
Query: 406 AG----IFFTGEHTSERFNGYVHGGYLAG 430
G I F GEHT G +G + +G
Sbjct: 468 NGQDSRIRFAGEHTIMDGAGCAYGAWESG 496
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 111/509 (21%), Positives = 178/509 (34%), Gaps = 142/509 (27%)
Query: 25 LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVW----ELAS 79
L +NGI+D L+LEA DR+GGR++ + G ++GA W +NP++ +L+
Sbjct: 27 LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDT---LTNPLFLEEAQLSL 83
Query: 80 KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
G D N Y I + G++ D K+ + + N S E +
Sbjct: 84 NDGRTRFVFDDDNFIY-IDEERGRV-------DHDKELLLEIVDN------EMSKFAE-L 128
Query: 140 KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMA 199
+ L S + +L + ++L R+FL D+ Y L +
Sbjct: 129 EFHQHLGVSDCSFFQLVMKYLLQ-----------------RRQFLTNDQIRYLPQLCRYL 171
Query: 200 E-------EFLSTSD---GKILDNRLKLN--KVVRELQHS-------------------R 228
E + LS D G N LN VV+ + S
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 229 NGVTVKTEDGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKCDV 279
VTV EDG VY A+YVI++ VL + I F+PPL +A +K
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHF 291
Query: 280 MVYTKIFLKFPCKFWP-------------------------------------------- 295
K+ +F W
Sbjct: 292 GALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSV 351
Query: 296 -CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQP--------- 345
C FF+ + G +F M+ P +N + + E QP
Sbjct: 352 TCWSQPLFFVNLSKSTGVASFMMLMQ--APLTNHIESIREDKERLFSFFQPVLNKIMKCL 409
Query: 346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV 405
D E + + M ++++ + P +I+V W + + RG+YS + V+ + A
Sbjct: 410 DSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS--ACFPGDDPVDMVVAMS 467
Query: 406 AG----IFFTGEHTSERFNGYVHGGYLAG 430
G I F GEHT G +G + +G
Sbjct: 468 NGQDSRIRFAGEHTIMDGAGCAYGAWESG 496
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 102/467 (21%), Positives = 188/467 (40%), Gaps = 67/467 (14%)
Query: 23 KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
K+L+E I ++L+LEA DR+GGR VRNE V V G ++ G N + L+
Sbjct: 38 KLLSEYKI-NVLVLEARDRVGGRTYTVRNEHVKWVDV--GGAYV----GPTQNRILRLSK 90
Query: 80 KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
+ G+ T + N R Y + GK P A + A + NL T +G+ I
Sbjct: 91 ELGIET-YKVNVNERLVQYVK-GKTYPFRGAFPPVWNPL--AYLDYNNLWRTMDEMGKEI 146
Query: 140 -------------------KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGE 180
K + KT E A F+ + E + + +
Sbjct: 147 PVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYV 206
Query: 181 RE-------FLVAD---ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG 230
R+ F V + ER + +++E+ + +L +++KL+ V + + +
Sbjct: 207 RQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMG-----LLGDKVKLSSPVTYIDQTDDN 261
Query: 231 VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFP 290
+ V+T + YE YVI ++I + + I FKP LP + + I++ + K + +
Sbjct: 262 IIVETLNHEHYECKYVI--SAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYK 319
Query: 291 CKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT--LTNGESKRVEAQPDEE 348
FW I E +++ P ++ + + ++ R+ +
Sbjct: 320 EAFWKKKDYCGCMIIEDEEAPIAI---TLDDTKPDGSLPAIMGFILARKADRLAKLHKDI 376
Query: 349 TLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRFQRGSYSNY-PIISDNQLVNSI 401
++ E+ + G + + L P W ++ G Y+ Y P Q I
Sbjct: 377 RKRKICELYAKVLG-----SQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVI 431
Query: 402 RAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERN 448
R PV I+F G T+ +++GY+ G AG + V+ + K +++
Sbjct: 432 RQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKD 478
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 186/456 (40%), Gaps = 78/456 (17%)
Query: 24 ILAENGIEDILILEASDRIGGRV---RNEKFGGVSVELGAGWIAGVGG----KESNPVWE 76
+LA G + +LEAS+R GG+V RNEK GW A +G ++ V E
Sbjct: 64 VLANAG-HQVTVLEASERAGGQVKTYRNEK---------EGWYANLGPMRLPEKHRIVRE 113
Query: 77 LASKSGLRTC-FS-DYTNARY---NIYDRSGKI-----------IPSGV---AADSYKKA 117
K GL+ FS + NA Y NI R G++ PS V A Y+++
Sbjct: 114 YIRKFGLQLNEFSQENENAWYFIKNIRKRVGEVNKDPGVLDYPVKPSEVGKSAGQLYEES 173
Query: 118 VESAIANLK--------NLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEV 169
++ A+ L+ N T S ++K P A+D I D +
Sbjct: 174 LQKAVEELRRTNCSYMLNKYDTYSTKEYLLKEGNLSPG--------AVDMI-GDLLNEDS 224
Query: 170 EPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN 229
++++ + + + A E+ + ++ M + L TS + + ++ LN V ++Q
Sbjct: 225 GYYVSFIESLKHDDIFAYEKRFDEIVGGMDK--LPTSMYQAIQEKVHLNARVIKIQQDVK 282
Query: 230 GVTVKTE----DGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKI 285
VTV + + A+YVI+ + + I F+PPLP K A+ TKI
Sbjct: 283 EVTVTYQTSEKETLSVTADYVIVCTTSRAARR--IKFEPPLPPKKAHALRSVHYRSGTKI 340
Query: 286 FLKFPCKFWPCS--PGKEFFIYAHERRGYYTFWQHMENAYP-GSNILVVTLTNGESKRVE 342
FL KFW G + R YY + +P G +++ ++ E
Sbjct: 341 FLTCTKKFWEDDGIHGGKSTTDLPSRFIYYP-----NHNFPNGVGVIIAYGIGDDANYFE 395
Query: 343 AQPDEET---LKEAMEVLQDMFGPDIPN-ATDILVPRWWNNRFQRGSYSNYPIISDNQLV 398
A E+ + + ++ + +I ++ RW +++ G + +
Sbjct: 396 ALDFEDCGDIVINDLSLIHQLPKEEIQAICRPSMIQRWSLDKYAMGGITTFTPYQFQHFS 455
Query: 399 NSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTG 434
++ APV I+F GE+T++ HG + I +G
Sbjct: 456 EALTAPVDRIYFAGEYTAQ-----AHGWIASTIKSG 486
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 90/452 (19%), Positives = 162/452 (35%), Gaps = 66/452 (14%)
Query: 34 LILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFS---DY 90
L+LEA DRIGGR + G E+G W+ + VW ++ + S ++
Sbjct: 66 LLLEARDRIGGRSWSSNIDGYPYEMGGTWVH----WHQSHVWREITRYKMHNALSPSFNF 121
Query: 91 TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSN----IGEVIKAATELP 146
+ + R+ + + ++ + + SA+ N++ TN + E
Sbjct: 122 SRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFR 181
Query: 147 SSPKTPLELAIDFILHDFEMAEVEPISTYV-----------DFGEREFLVADERGYAH-- 193
+ ID I + + E + ++ FGE A GY +
Sbjct: 182 KYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWA-MSGYTYQG 240
Query: 194 -----LLYK-------MAEEFLSTSDGKILDNRLK--LNKVVRELQHSRNGVTVKTEDGC 239
+ YK A F + G RL VR + + R+ V DG
Sbjct: 241 CMDCLMSYKFKDGQSAFARRFWEEAAGT---GRLGYVFGCPVRSVVNERDAARVTARDGR 297
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ A V+ + + VL + I F P L + A++ V + TK+ + K G
Sbjct: 298 EFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTG 355
Query: 300 KEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDE---ETLKEAMEV 356
Y + Y + P N +V N + QPDE ETLK ++
Sbjct: 356 ---IAYPFNKLCYAI----GDGTTPAGNTHLVCFGNSAN---HIQPDEDVRETLKAVGQL 405
Query: 357 LQDMFGPDIPNATDILVPRWWNNRFQRGS--YSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
FG ++ W + F +G+ +S ++S + + +R G+ F
Sbjct: 406 APGTFG-----VKRLVFHNWVKDEFAKGAWFFSRPGMVS--ECLQGLREKHGGVVFANSD 458
Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446
+ + ++ G G + V+E++ E
Sbjct: 459 WALGWRSFIDGAIEEGTRAARVVLEELGTKRE 490
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 103/255 (40%), Gaps = 21/255 (8%)
Query: 203 LSTSDGKILDNRLKLNKVVRELQHSRNGVTV----KTEDGCVYEANYVILSASIGVLQSD 258
L TS + ++ ++ LN V ++Q + VTV ++ A+YVI+ + +
Sbjct: 243 LPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRATRR- 301
Query: 259 LISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS--PGKEFFIYAHERRGYYTFW 316
I F+PPLP K A+ TKIFL KFW G + R YY
Sbjct: 302 -IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFIYYP-- 358
Query: 317 QHMENAYPGSNILVVTLTNGESKRVEA---QPDEETLKEAMEVLQDMFGPDIPN-ATDIL 372
N G +++ ++ +A + + + + ++ + +I +
Sbjct: 359 --NHNFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSM 416
Query: 373 VPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGID 432
+ +W +++ G + + S+ A V I+F GEHT+E HG + I
Sbjct: 417 IQKWSLDKYAMGGITTFTPYQFQHFSESLTASVDRIYFAGEHTAE-----AHGWIDSTIK 471
Query: 433 TGKAVVEKIRKDNER 447
+G + + +E+
Sbjct: 472 SGLRAARDVNRASEQ 486
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 89/452 (19%), Positives = 161/452 (35%), Gaps = 66/452 (14%)
Query: 34 LILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFS---DY 90
L+LEA DRIGGR + G E+G W+ + VW ++ + S ++
Sbjct: 66 LLLEARDRIGGRSWSSNIDGYPYEMGGTWVH----WHQSHVWREITRYKMHNALSPSFNF 121
Query: 91 TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSN----IGEVIKAATELP 146
+ + R+ + + ++ + + SA+ N++ TN + E
Sbjct: 122 SRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFR 181
Query: 147 SSPKTPLELAIDFILHDFEMAEVEPISTYV-----------DFGEREFLVADERGYAH-- 193
+ ID I + + E + ++ FGE A GY +
Sbjct: 182 KYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWA-MSGYTYQG 240
Query: 194 -----LLYK-------MAEEFLSTSDGKILDNRLK--LNKVVRELQHSRNGVTVKTEDGC 239
+ YK A F + G RL VR + + R+ V DG
Sbjct: 241 CMDCLMSYKFKDGQSAFARRFWEEAAGT---GRLGYVFGCPVRSVVNERDAARVTARDGR 297
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ A V+ + + VL + I F P L + A++ V + TK+ + K G
Sbjct: 298 EFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTG 355
Query: 300 KEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDE---ETLKEAMEV 356
Y + Y + P N +V + QPDE ETLK ++
Sbjct: 356 ---IAYPFNKLCYAI----GDGTTPAGNTHLVCFGTDAN---HIQPDEDVRETLKAVGQL 405
Query: 357 LQDMFGPDIPNATDILVPRWWNNRFQRGS--YSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
FG ++ W + F +G+ +S ++S + + +R G+ F
Sbjct: 406 APGTFG-----VKRLVFHNWVKDEFAKGAWFFSRPGMVS--ECLQGLREKHGGVVFANSD 458
Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446
+ + ++ G G + V+E++ E
Sbjct: 459 WALGWRSFIDGAIEEGTRAARVVLEELGTKRE 490
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/443 (18%), Positives = 168/443 (37%), Gaps = 58/443 (13%)
Query: 33 ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
+ ++EA DR+GGR + G +E+G W++ + + L + GL+T F Y
Sbjct: 31 VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS----PDQTALISLLDELGLKT-FERY-- 83
Query: 93 ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP 152
R G+ + A + + +S N + + I E+ A ++ +
Sbjct: 84 -------REGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWA 136
Query: 153 LELAID--------FILHDFEMAEV-EPISTYVDFG------------EREFLVADERGY 191
LA D ++++ + AE + I ++ G + + A +
Sbjct: 137 HPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSF 196
Query: 192 AHLLYKMAEEFL------------STSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
+HL+ E+F+ S + L + + LN VR ++ + +G TV +
Sbjct: 197 SHLV---DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDI 253
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW-PCSP 298
EA+ VIL+ + IS+ PPLP+ + + + + + K+ + FW
Sbjct: 254 RVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGL 311
Query: 299 GKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQ 358
F + + Y H ++ LV +++ ++ + EE + L
Sbjct: 312 SGTGFGASEVVQEVYDNTNHEDD----RGTLVAFVSDEKADAMFELSAEERKATILASLA 367
Query: 359 DMFGPDIPNATDILVPRWWNNRFQRGSYS-NYPIISDNQLVNSIRAPVAGIFFTGEHTSE 417
GP W + + RG Y+ ++ + ++ R PV I F+ +
Sbjct: 368 RYLGPKAEEPVVYYESDWGSEEWTRGCYTASFDLGGLHRYGADSRTPVGPIHFSCSDIAA 427
Query: 418 RFNGYVHGGYLAGIDTGKAVVEK 440
G+V G G T ++ +
Sbjct: 428 EGYGHVDGAVRMGQRTAADIIAR 450
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 89/452 (19%), Positives = 161/452 (35%), Gaps = 66/452 (14%)
Query: 34 LILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFS---DY 90
L+LEA DRIGGR + G E+G W+ + VW ++ + S ++
Sbjct: 66 LLLEARDRIGGRSWSSNIDGYPYEMGGTWVH----WHQSHVWREITRYKMHNALSPSFNF 121
Query: 91 TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSN----IGEVIKAATELP 146
+ + R+ + + ++ + + SA+ N++ TN + E
Sbjct: 122 SRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFR 181
Query: 147 SSPKTPLELAIDFILHDFEMAEVEPISTYV-----------DFGEREFLVADERGYAH-- 193
+ ID I + + E + ++ FGE A GY +
Sbjct: 182 KYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWA-MSGYTYQG 240
Query: 194 -----LLYK-------MAEEFLSTSDGKILDNRLK--LNKVVRELQHSRNGVTVKTEDGC 239
+ YK A F + G RL VR + + R+ V DG
Sbjct: 241 CMDCLMSYKFKDGQSAFARRFWEEAAGT---GRLGYVFGCPVRSVVNERDAARVTARDGR 297
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
+ A V+ + + VL + I F P L + A++ V + TK+ + K G
Sbjct: 298 EFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTG 355
Query: 300 KEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDE---ETLKEAMEV 356
Y + Y + P N +V + QPDE ETLK ++
Sbjct: 356 ---IAYPFNKLCYAI----GDGTTPAGNTHLVCFGTDAN---HIQPDEDVRETLKAVGQL 405
Query: 357 LQDMFGPDIPNATDILVPRWWNNRFQRGS--YSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
FG ++ W + F +G+ +S ++S + + +R G+ F
Sbjct: 406 APGTFG-----VKRLVFHNWVKDEFAKGAWFFSRPGMVS--ECLQGLREKHGGVVFANSD 458
Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446
+ + ++ G G + V+E++ E
Sbjct: 459 WALGWRSFIDGAIEEGTRAARVVLEELGTKRE 490
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 103/287 (35%), Gaps = 74/287 (25%)
Query: 213 NRLKLNKVVRELQH--SRNGVTVKTEDGCVYEANYVILSASIGVLQSDL---------IS 261
N LKL+ V+ + S+N VTV EDG VY A+YVI++ VL + I
Sbjct: 215 NWLKLSCEVKSITREPSKN-VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIE 273
Query: 262 FKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWP-------------------------- 295
F+PPL +A +K K+ +F W
Sbjct: 274 FQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENL 333
Query: 296 -------------------CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNG 336
C FF+ + G +F M+ P +N + +
Sbjct: 334 DELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQ--APLTNHIESIREDK 391
Query: 337 ESKRVEAQP---------DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYS 387
E QP D E + + M ++++ + P +I+V W + + RG+YS
Sbjct: 392 ERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS 451
Query: 388 NYPIISDNQLVNSIRAPVAG----IFFTGEHTSERFNGYVHGGYLAG 430
+ V+ + A G I F GEHT G +G + +G
Sbjct: 452 --ACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESG 496
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 25 LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGW 62
L +NGI+D L+LEA DR+GGR++ + G ++GA W
Sbjct: 27 LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASW 65
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 121/315 (38%), Gaps = 80/315 (25%)
Query: 25 LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVW----ELAS 79
L +NGI+D L+LEA DR+GGR++ + G ++GA W +NP++ +L+
Sbjct: 27 LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDT---LTNPLFLEEAQLSL 83
Query: 80 KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
G D N Y I + G++ D K+ + L+ ++ S E +
Sbjct: 84 NDGRTRFVFDDDNFIY-IDEERGRV-------DHDKELL------LEIVDNEXSKFAE-L 128
Query: 140 KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMA 199
+ L S + +L ++L R+FL D+ Y L +
Sbjct: 129 EFHQHLGVSDCSFFQLVXKYLLQ-----------------RRQFLTNDQIRYLPQLCRYL 171
Query: 200 E-------EFLSTSD---GKILDNRLKLN--KVVRELQHS--RNGVTVKTE--------- 236
E + LS D G N LN VV+ + S +N + + E
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 237 --------DGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKCDV 279
DG VY A+YVI++ VL + I F+PPL +A +K
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHF 291
Query: 280 MVYTKIFLKFPCKFW 294
K+ +F W
Sbjct: 292 GALGKVIFEFEECCW 306
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV 405
D E + + ++++ + P +I+V W + + RG+YS + V+ + A
Sbjct: 410 DSEDVIDGXRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS--ACFPGDDPVDXVVAXS 467
Query: 406 AG----IFFTGEHTSERFNGYVHGGYLAG 430
G I F GEHT G +G + +G
Sbjct: 468 NGQDSRIRFAGEHTIXDGAGCAYGAWESG 496
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 119/295 (40%), Gaps = 52/295 (17%)
Query: 33 ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
+ ++EA DR+GGR + G +E+G W++ + + L + GL+T F Y
Sbjct: 31 VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS----PDQTALISLLDELGLKT-FERY-- 83
Query: 93 ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP 152
R G+ + A + + +S N + + I E+ A ++ +
Sbjct: 84 -------REGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWA 136
Query: 153 LELAID--------FILHDFEMAEV-EPISTYVDFG------------EREFLVADERGY 191
LA D ++++ + AE + I ++ G + + A +
Sbjct: 137 HPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSF 196
Query: 192 AHLLYKMAEEFL------------STSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
+HL+ E+F+ S + L + + LN VR ++ + +G TV +
Sbjct: 197 SHLV---DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDI 253
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
EA+ VIL+ + IS+ PPLP+ + + + + + K+ + FW
Sbjct: 254 RVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 119/295 (40%), Gaps = 52/295 (17%)
Query: 33 ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
+ ++EA DR+GGR + G +E+G W++ + + L + GL+T F Y
Sbjct: 31 VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS----PDQTALISLLDELGLKT-FERY-- 83
Query: 93 ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP 152
R G+ + A + + +S N + + I E+ A ++ +
Sbjct: 84 -------REGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWA 136
Query: 153 LELAID--------FILHDFEMAEV-EPISTYVDFG------------EREFLVADERGY 191
LA D ++++ + AE + I ++ G + + A +
Sbjct: 137 HPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSF 196
Query: 192 AHLLYKMAEEFL------------STSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
+HL+ E+F+ S + L + + LN VR ++ + +G TV +
Sbjct: 197 SHLV---DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDI 253
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
EA+ VIL+ + IS+ PPLP+ + + + + + K+ + FW
Sbjct: 254 RVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 119/295 (40%), Gaps = 52/295 (17%)
Query: 33 ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
+ ++EA DR+GGR + G +E+G W++ + + L + GL+T F Y
Sbjct: 31 VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS----PDQTALISLLDELGLKT-FERY-- 83
Query: 93 ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP 152
R G+ + A + + +S N + + I E+ A ++ +
Sbjct: 84 -------REGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWA 136
Query: 153 LELAID--------FILHDFEMAEV-EPISTYVDFG------------EREFLVADERGY 191
LA D ++++ + AE + I ++ G + + A +
Sbjct: 137 HPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSF 196
Query: 192 AHLLYKMAEEFL------------STSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
+HL+ E+F+ S + L + + LN VR ++ + +G TV +
Sbjct: 197 SHLV---DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDI 253
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
EA+ VIL+ + IS+ PPLP+ + + + + + K+ + FW
Sbjct: 254 RVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 129/309 (41%), Gaps = 61/309 (19%)
Query: 24 ILAENGIEDILILEASDRIGGRVR---NEKFGGVSVELGAGWIAGVGG----KESNPVWE 76
+LA G + +LEAS+R GGRVR NE+ AGW A +G ++ V E
Sbjct: 51 VLAGAG-HQVTVLEASERPGGRVRTYRNEE---------AGWYANLGPMRLPEKHRIVRE 100
Query: 77 LASKSGLRTC-FS-DYTNARY---NIYDRSGKII-----------PSGV---AADSYKKA 117
K LR FS + NA Y NI + G++ PS A Y+++
Sbjct: 101 YIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEES 160
Query: 118 VESAIANLK--------NLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEV 169
+ + LK N T S +IK P A+D I D +
Sbjct: 161 LGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPG--------AVDMI-GDLLNEDS 211
Query: 170 EPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN 229
++++ + + + A E+ + ++ M + L T+ + + +++ N V ++Q +
Sbjct: 212 GYYVSFIESLKHDDIFAYEKRFDEIVDGMDK--LPTAMYRDIQDKVHFNAQVIKIQQNDQ 269
Query: 230 GVTVKTE----DGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKI 285
VTV E + A+YVI+ + ++ LI F PPL K A+ TKI
Sbjct: 270 KVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSVHYRSGTKI 327
Query: 286 FLKFPCKFW 294
FL KFW
Sbjct: 328 FLTCTTKFW 336
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWK 270
L + + LN VR ++ NGV+V +E V A +VI++ + +SF PPLP+ +
Sbjct: 227 LGDDVVLNSPVRTIKWDENGVSVVSERATV-NARFVIMAVPPNLYSR--VSFDPPLPRRQ 283
Query: 271 TEAIEKCDVMVYTKIFLKFPCKFW 294
+ + + + K+ + FW
Sbjct: 284 HQMHQHQSLGLVIKVHAVYDTPFW 307
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 33 ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
+ +LEA DR+GGR + G +E+G W++ + + EL + GL+ +S Y +
Sbjct: 33 VAVLEARDRVGGRTWTDTIDGAMLEIGGQWVS----PDQTVLMELLDELGLK-MYSRYRD 87
>pdb|2B9W|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2B9X|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2B9Y|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BA9|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BAB|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BAC|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
Length = 424
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 25 LAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG 82
L + G D ILE +D +GG+ + + G E+GA I GV ++ + E+ ++G
Sbjct: 25 LEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGA--IMGVPSYDT--IQEIMDRTG 78
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 149 PKTPLELAIDFILHDFEMAEVEPISTYVD---FGEREFLVADERG-YAHLLYKMAEEFLS 204
P T L +D+I+ D E + E Y + + F + D + HL K +F
Sbjct: 348 PGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDF-- 405
Query: 205 TSDGKILDNRLKLNKV 220
S+G I DNR+ LN +
Sbjct: 406 KSNGHIYDNRIVLNGI 421
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 283 TKIFLKFPCKFWPCSPGKEFFIYAHE-RRGYYTFWQHM 319
K+ L P K P PGK ++YA E RG Y W M
Sbjct: 409 AKMGLNVPNKNNPAYPGKTAYVYAEEAARGMYHHWSRM 446
>pdb|1OSG|A Chain A, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|B Chain B, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|C Chain C, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|D Chain D, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|E Chain E, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|F Chain F, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|3V56|A Chain A, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|B Chain B, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|C Chain C, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|D Chain D, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|E Chain E, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|F Chain F, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide
Length = 208
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 335 NGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGS 385
N +KR P+E ++ ++++ D P I + VP W F+RGS
Sbjct: 51 NSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVP--WLLSFKRGS 99
>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|B Chain B, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|C Chain C, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|D Chain D, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
Length = 372
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 217 LNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEK 276
N V ++H +GVT++T DG Y+A I+ A G DL+ P P K A +
Sbjct: 168 FNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCA--GTWVKDLLPELPVQPVRKVFAWYQ 224
Query: 277 CDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHE 308
D K KFP G +++ + E
Sbjct: 225 ADGRYSVKN--KFPAFTGELPNGDQYYGFPAE 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,343,757
Number of Sequences: 62578
Number of extensions: 602558
Number of successful extensions: 1662
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1509
Number of HSP's gapped (non-prelim): 100
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)