Query 010995
Match_columns 496
No_of_seqs 315 out of 2014
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02676 polyamine oxidase 100.0 5.1E-57 1.1E-61 456.9 46.9 444 1-449 21-481 (487)
2 PLN02268 probable polyamine ox 100.0 9.2E-51 2E-55 411.3 43.5 413 7-441 1-434 (435)
3 PLN02568 polyamine oxidase 100.0 4E-50 8.6E-55 408.9 45.6 424 5-442 4-536 (539)
4 KOG0685 Flavin-containing amin 100.0 2.7E-51 5.8E-56 387.4 32.9 438 4-444 19-494 (498)
5 PLN03000 amine oxidase 100.0 1.8E-50 4E-55 418.4 42.0 417 5-444 183-626 (881)
6 PLN02529 lysine-specific histo 100.0 1.9E-49 4E-54 410.6 42.6 417 5-443 159-600 (738)
7 PLN02328 lysine-specific histo 100.0 3.3E-49 7.1E-54 410.0 41.9 420 5-446 237-684 (808)
8 COG1231 Monoamine oxidase [Ami 100.0 2.7E-48 5.9E-53 368.1 30.9 418 3-442 4-448 (450)
9 PLN02976 amine oxidase 100.0 8.7E-47 1.9E-51 399.4 43.1 422 5-446 692-1191(1713)
10 KOG0029 Amine oxidase [Seconda 100.0 4.6E-47 1E-51 379.1 35.0 416 4-443 13-461 (501)
11 TIGR00562 proto_IX_ox protopor 100.0 1.2E-40 2.7E-45 340.5 37.6 408 6-442 2-461 (462)
12 PRK12416 protoporphyrinogen ox 100.0 3.1E-40 6.8E-45 336.9 36.2 406 6-441 1-461 (463)
13 PRK11883 protoporphyrinogen ox 100.0 5.6E-39 1.2E-43 327.7 34.0 402 7-439 1-450 (451)
14 PLN02576 protoporphyrinogen ox 100.0 1.3E-38 2.7E-43 328.1 34.5 410 4-442 10-488 (496)
15 PF01593 Amino_oxidase: Flavin 100.0 3.2E-39 6.9E-44 328.6 26.9 401 16-438 1-450 (450)
16 PRK07233 hypothetical protein; 100.0 4.9E-38 1.1E-42 319.3 33.7 400 8-442 1-432 (434)
17 PLN02612 phytoene desaturase 100.0 1.1E-37 2.3E-42 321.8 35.7 407 5-443 92-550 (567)
18 TIGR02731 phytoene_desat phyto 100.0 2.4E-37 5.1E-42 314.8 34.0 397 8-438 1-453 (453)
19 PLN02487 zeta-carotene desatur 100.0 2E-35 4.3E-40 301.0 35.6 402 6-442 75-554 (569)
20 PRK07208 hypothetical protein; 100.0 5.7E-35 1.2E-39 299.6 38.5 408 5-440 3-460 (479)
21 COG1232 HemY Protoporphyrinoge 100.0 3.5E-35 7.6E-40 286.6 33.4 399 8-438 2-443 (444)
22 TIGR02732 zeta_caro_desat caro 100.0 3.8E-35 8.1E-40 297.5 31.5 398 8-438 1-474 (474)
23 TIGR03467 HpnE squalene-associ 100.0 1.9E-33 4.2E-38 284.3 31.6 379 20-438 1-418 (419)
24 COG3380 Predicted NAD/FAD-depe 100.0 1E-33 2.3E-38 248.3 17.1 324 7-441 2-331 (331)
25 TIGR02733 desat_CrtD C-3',4' d 100.0 3.8E-30 8.2E-35 264.4 35.7 412 7-439 2-490 (492)
26 TIGR02734 crtI_fam phytoene de 100.0 2.7E-29 5.8E-34 258.9 31.3 418 9-446 1-497 (502)
27 KOG1276 Protoporphyrinogen oxi 100.0 5.5E-28 1.2E-32 225.6 28.0 412 5-438 10-490 (491)
28 TIGR02730 carot_isom carotene 100.0 6E-27 1.3E-31 240.3 34.7 420 7-441 1-492 (493)
29 COG3349 Uncharacterized conser 99.9 9.7E-27 2.1E-31 226.0 16.9 405 7-444 1-466 (485)
30 COG1233 Phytoene dehydrogenase 99.9 3E-24 6.5E-29 218.4 21.6 239 5-256 2-283 (487)
31 COG2907 Predicted NAD/FAD-bind 99.9 9.9E-22 2.1E-26 178.9 24.6 262 4-290 6-305 (447)
32 KOG4254 Phytoene desaturase [C 99.8 8E-18 1.7E-22 158.6 18.3 245 185-443 257-548 (561)
33 PRK13977 myosin-cross-reactive 99.8 7.5E-17 1.6E-21 161.8 21.8 71 5-81 21-97 (576)
34 TIGR00031 UDP-GALP_mutase UDP- 99.7 1.7E-15 3.7E-20 147.3 23.8 223 6-257 1-250 (377)
35 PTZ00363 rab-GDP dissociation 99.7 2.9E-16 6.3E-21 156.4 17.4 228 5-250 3-286 (443)
36 PF13450 NAD_binding_8: NAD(P) 99.7 8E-17 1.7E-21 116.5 5.8 68 11-81 1-68 (68)
37 PRK08773 2-octaprenyl-3-methyl 99.5 3.3E-12 7.1E-17 127.9 26.9 166 1-254 1-169 (392)
38 COG2081 Predicted flavoprotein 99.5 4.1E-14 8.9E-19 133.5 11.2 57 189-251 108-164 (408)
39 COG0654 UbiH 2-polyprenyl-6-me 99.5 1.6E-11 3.4E-16 122.5 26.2 306 6-442 2-317 (387)
40 TIGR01988 Ubi-OHases Ubiquinon 99.5 3.2E-11 6.9E-16 120.6 26.9 160 8-255 1-164 (385)
41 TIGR01377 soxA_mon sarcosine o 99.5 8.3E-11 1.8E-15 117.4 28.8 56 191-253 144-199 (380)
42 COG0644 FixC Dehydrogenases (f 99.5 1.7E-11 3.8E-16 122.4 23.6 43 5-48 2-44 (396)
43 PRK06847 hypothetical protein; 99.5 2.5E-11 5.5E-16 120.8 24.5 160 5-255 3-164 (375)
44 PF03486 HI0933_like: HI0933-l 99.5 3E-13 6.5E-18 133.5 10.5 57 189-251 106-163 (409)
45 PRK07494 2-octaprenyl-6-methox 99.4 3.2E-11 6.8E-16 120.7 24.7 160 4-254 5-167 (388)
46 PRK10157 putative oxidoreducta 99.4 2.6E-11 5.6E-16 122.2 23.9 43 1-45 1-43 (428)
47 PRK09126 hypothetical protein; 99.4 5.2E-11 1.1E-15 119.3 26.1 45 211-255 124-168 (392)
48 PF01266 DAO: FAD dependent ox 99.4 6.8E-13 1.5E-17 131.1 12.2 58 191-255 146-204 (358)
49 PRK07364 2-octaprenyl-6-methox 99.4 7.8E-11 1.7E-15 119.0 27.3 162 4-256 16-183 (415)
50 PRK10015 oxidoreductase; Provi 99.4 1.2E-10 2.5E-15 117.4 27.8 42 1-44 1-42 (429)
51 PRK05714 2-octaprenyl-3-methyl 99.4 5.3E-11 1.2E-15 119.7 24.5 167 6-257 2-171 (405)
52 TIGR01984 UbiH 2-polyprenyl-6- 99.4 8.9E-11 1.9E-15 117.2 24.6 58 192-254 105-162 (382)
53 PRK06184 hypothetical protein; 99.4 1.7E-10 3.8E-15 119.1 27.1 165 5-257 2-171 (502)
54 COG1635 THI4 Ribulose 1,5-bisp 99.4 5.9E-12 1.3E-16 108.6 13.1 68 6-86 30-97 (262)
55 PRK07045 putative monooxygenas 99.4 1.6E-10 3.4E-15 115.6 25.7 160 5-257 4-168 (388)
56 PRK08013 oxidoreductase; Provi 99.4 1.9E-10 4.2E-15 115.3 26.2 166 6-257 3-171 (400)
57 PRK07333 2-octaprenyl-6-methox 99.4 1.6E-10 3.5E-15 116.2 25.6 57 192-254 111-167 (403)
58 PRK07236 hypothetical protein; 99.4 1.3E-11 2.7E-16 123.3 17.0 155 1-257 1-157 (386)
59 PRK11728 hydroxyglutarate oxid 99.4 8.1E-12 1.8E-16 124.9 15.4 57 191-254 148-204 (393)
60 PRK08020 ubiF 2-octaprenyl-3-m 99.4 2.5E-10 5.3E-15 114.4 25.9 58 194-256 114-171 (391)
61 PRK07588 hypothetical protein; 99.4 3.1E-10 6.7E-15 113.6 26.2 159 7-257 1-161 (391)
62 PRK08850 2-octaprenyl-6-methox 99.4 2.5E-10 5.3E-15 114.8 25.1 57 194-255 113-169 (405)
63 PRK08849 2-octaprenyl-3-methyl 99.4 2.6E-10 5.6E-15 113.8 25.0 47 211-257 124-170 (384)
64 TIGR02032 GG-red-SF geranylger 99.4 5.5E-10 1.2E-14 107.2 26.4 55 194-254 93-148 (295)
65 PRK07608 ubiquinone biosynthes 99.4 3E-10 6.6E-15 113.6 25.0 56 192-254 111-167 (388)
66 PRK06185 hypothetical protein; 99.4 5.2E-10 1.1E-14 112.7 26.6 67 1-87 1-67 (407)
67 PRK08243 4-hydroxybenzoate 3-m 99.4 4.7E-10 1E-14 112.2 26.1 157 6-257 2-166 (392)
68 PRK05732 2-octaprenyl-6-methox 99.3 3.7E-10 7.9E-15 113.3 25.1 44 211-254 126-169 (395)
69 COG0579 Predicted dehydrogenas 99.3 1.8E-11 4E-16 119.6 14.7 197 5-256 2-213 (429)
70 PRK12409 D-amino acid dehydrog 99.3 2E-11 4.3E-16 123.0 15.5 58 191-254 196-258 (410)
71 PRK06183 mhpA 3-(3-hydroxyphen 99.3 6.6E-10 1.4E-14 115.7 26.3 164 4-257 8-177 (538)
72 PRK06834 hypothetical protein; 99.3 1.1E-09 2.4E-14 112.1 27.4 57 194-256 102-158 (488)
73 PRK06617 2-octaprenyl-6-methox 99.3 8.2E-10 1.8E-14 109.7 25.4 161 6-257 1-163 (374)
74 TIGR02023 BchP-ChlP geranylger 99.3 2.2E-09 4.7E-14 107.3 27.5 32 7-39 1-32 (388)
75 PRK08132 FAD-dependent oxidore 99.3 2.3E-09 5E-14 111.9 28.8 64 2-87 19-84 (547)
76 PRK06126 hypothetical protein; 99.3 1E-09 2.2E-14 114.7 26.0 66 2-87 3-68 (545)
77 PRK08244 hypothetical protein; 99.3 6.4E-10 1.4E-14 114.7 24.3 62 6-87 2-63 (493)
78 PRK11259 solA N-methyltryptoph 99.3 5.1E-11 1.1E-15 118.7 15.7 57 191-254 148-204 (376)
79 TIGR03329 Phn_aa_oxid putative 99.3 6.7E-11 1.5E-15 120.6 16.5 55 191-253 182-236 (460)
80 COG0562 Glf UDP-galactopyranos 99.3 1.2E-10 2.6E-15 106.3 14.7 71 6-81 1-74 (374)
81 PTZ00383 malate:quinone oxidor 99.3 2E-10 4.4E-15 116.5 17.5 60 191-255 210-274 (497)
82 PLN02463 lycopene beta cyclase 99.3 2.2E-09 4.8E-14 107.9 24.7 54 193-253 115-168 (447)
83 TIGR01989 COQ6 Ubiquinone bios 99.3 1.7E-09 3.6E-14 109.7 23.8 60 193-257 118-186 (437)
84 TIGR00292 thiazole biosynthesi 99.3 2.3E-10 5E-15 106.1 16.0 41 5-46 20-60 (254)
85 PRK00711 D-amino acid dehydrog 99.2 3.5E-10 7.5E-15 114.3 17.4 57 191-254 200-257 (416)
86 PRK04176 ribulose-1,5-biphosph 99.2 2E-10 4.4E-15 106.9 14.0 41 5-46 24-64 (257)
87 PF01494 FAD_binding_3: FAD bi 99.2 1.4E-10 3.1E-15 114.4 13.8 60 192-257 111-175 (356)
88 TIGR01373 soxB sarcosine oxida 99.2 3E-10 6.6E-15 114.3 16.2 56 192-254 183-240 (407)
89 PRK13339 malate:quinone oxidor 99.2 3.1E-10 6.7E-15 114.7 16.0 59 191-254 183-247 (497)
90 PRK07190 hypothetical protein; 99.2 2.9E-10 6.4E-15 116.1 15.5 47 211-257 122-168 (487)
91 PRK07538 hypothetical protein; 99.2 3.8E-09 8.2E-14 106.5 23.2 60 8-87 2-61 (413)
92 PRK05868 hypothetical protein; 99.2 3.8E-10 8.1E-15 111.8 15.6 161 6-257 1-163 (372)
93 PRK08163 salicylate hydroxylas 99.2 2.7E-10 5.9E-15 114.3 14.7 166 1-257 1-169 (396)
94 PRK05257 malate:quinone oxidor 99.2 1E-09 2.2E-14 111.9 18.7 58 191-254 182-246 (494)
95 PF01946 Thi4: Thi4 family; PD 99.2 5.5E-11 1.2E-15 103.5 8.0 42 5-47 16-57 (230)
96 PLN02172 flavin-containing mon 99.2 4.2E-10 9E-15 113.7 15.3 42 5-47 9-50 (461)
97 PRK11445 putative oxidoreducta 99.2 1.3E-08 2.8E-13 100.2 25.4 46 211-256 111-159 (351)
98 TIGR01790 carotene-cycl lycope 99.2 1.2E-08 2.5E-13 102.2 25.3 56 192-254 85-141 (388)
99 PLN02697 lycopene epsilon cycl 99.2 3.1E-08 6.6E-13 101.3 28.4 56 192-254 192-248 (529)
100 PRK11101 glpA sn-glycerol-3-ph 99.2 5.6E-10 1.2E-14 115.8 16.0 58 191-254 148-211 (546)
101 PF06100 Strep_67kDa_ant: Stre 99.2 5.7E-09 1.2E-13 102.3 21.6 70 6-80 2-76 (500)
102 PRK06753 hypothetical protein; 99.2 5.2E-10 1.1E-14 111.3 14.8 152 8-257 2-155 (373)
103 PLN00093 geranylgeranyl diphos 99.2 1.8E-08 3.9E-13 101.8 25.8 35 5-40 38-72 (450)
104 TIGR03364 HpnW_proposed FAD de 99.1 7.4E-10 1.6E-14 109.8 15.0 54 191-254 144-197 (365)
105 TIGR01320 mal_quin_oxido malat 99.1 1.5E-09 3.1E-14 110.6 17.2 58 191-254 177-240 (483)
106 PRK12266 glpD glycerol-3-phosp 99.1 4.3E-10 9.4E-15 115.7 13.4 45 1-46 1-45 (508)
107 PRK06996 hypothetical protein; 99.1 1.9E-08 4E-13 100.9 24.9 55 192-252 115-172 (398)
108 PRK01747 mnmC bifunctional tRN 99.1 7.6E-10 1.6E-14 117.9 15.5 57 191-254 407-463 (662)
109 PRK08294 phenol 2-monooxygenas 99.1 3.2E-08 6.9E-13 104.3 27.2 62 4-87 30-94 (634)
110 PF13738 Pyr_redox_3: Pyridine 99.1 9.2E-11 2E-15 106.1 6.6 42 211-252 95-136 (203)
111 TIGR02028 ChlP geranylgeranyl 99.1 4.1E-08 8.8E-13 98.2 25.9 36 7-43 1-36 (398)
112 PRK13369 glycerol-3-phosphate 99.1 4.8E-10 1.1E-14 115.4 12.2 58 191-254 154-215 (502)
113 PF05834 Lycopene_cycl: Lycope 99.1 9.5E-08 2.1E-12 94.7 28.0 56 192-254 87-142 (374)
114 PF00890 FAD_binding_2: FAD bi 99.1 2.6E-09 5.7E-14 107.9 17.2 59 190-254 139-203 (417)
115 PLN02661 Putative thiazole syn 99.1 3.1E-09 6.7E-14 101.3 14.7 42 5-47 91-133 (357)
116 TIGR00275 flavoprotein, HI0933 99.1 9.2E-10 2E-14 109.9 11.8 58 189-253 102-159 (400)
117 TIGR03219 salicylate_mono sali 99.1 2E-09 4.4E-14 108.5 14.4 58 192-257 105-162 (414)
118 PRK06481 fumarate reductase fl 99.1 8.3E-09 1.8E-13 106.3 18.7 41 5-46 60-100 (506)
119 PRK06475 salicylate hydroxylas 99.1 4.6E-09 9.9E-14 105.4 16.3 166 6-257 2-170 (400)
120 KOG2820 FAD-dependent oxidored 99.1 4.5E-09 9.8E-14 96.7 14.5 59 192-256 153-214 (399)
121 PRK08274 tricarballylate dehyd 99.0 1.1E-09 2.5E-14 112.0 11.8 58 189-252 128-190 (466)
122 COG0665 DadA Glycine/D-amino a 99.0 2.8E-09 6E-14 106.7 14.2 58 191-255 155-213 (387)
123 TIGR01813 flavo_cyto_c flavocy 99.0 1.2E-08 2.5E-13 103.8 18.8 38 8-46 1-39 (439)
124 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 4.3E-09 9.4E-14 105.0 14.6 64 6-87 2-65 (390)
125 KOG2614 Kynurenine 3-monooxyge 99.0 2.2E-08 4.8E-13 95.3 17.3 36 6-42 2-37 (420)
126 PRK07121 hypothetical protein; 99.0 1.8E-08 3.9E-13 103.8 17.7 41 5-46 19-59 (492)
127 KOG1399 Flavin-containing mono 99.0 9.3E-09 2E-13 102.1 13.9 43 4-47 4-46 (448)
128 COG0578 GlpA Glycerol-3-phosph 99.0 1E-07 2.2E-12 95.6 20.8 58 4-65 10-67 (532)
129 PLN02464 glycerol-3-phosphate 98.9 1E-08 2.2E-13 107.8 13.9 39 5-44 70-108 (627)
130 PRK09897 hypothetical protein; 98.9 1.5E-08 3.3E-13 103.4 14.4 56 191-252 106-164 (534)
131 PF00743 FMO-like: Flavin-bind 98.9 3.3E-09 7.2E-14 108.7 9.1 37 7-44 2-38 (531)
132 PRK05249 soluble pyridine nucl 98.9 3.3E-08 7.2E-13 101.2 16.4 43 5-48 4-46 (461)
133 TIGR01789 lycopene_cycl lycope 98.9 5.8E-07 1.3E-11 88.8 24.2 36 8-44 1-38 (370)
134 TIGR01292 TRX_reduct thioredox 98.9 1.5E-08 3.3E-13 97.5 12.8 42 211-253 70-111 (300)
135 PF00996 GDI: GDP dissociation 98.9 3.6E-08 7.8E-13 97.4 15.1 223 4-249 2-284 (438)
136 PRK12842 putative succinate de 98.9 1.2E-07 2.6E-12 99.3 19.5 46 1-47 4-49 (574)
137 PRK05192 tRNA uridine 5-carbox 98.9 2E-08 4.3E-13 102.7 13.0 40 5-45 3-43 (618)
138 PF13454 NAD_binding_9: FAD-NA 98.9 4.7E-08 1E-12 84.0 13.5 42 211-252 113-155 (156)
139 COG2072 TrkA Predicted flavopr 98.9 2.6E-08 5.6E-13 100.4 13.3 48 4-51 6-53 (443)
140 PLN02927 antheraxanthin epoxid 98.9 5.8E-08 1.3E-12 101.0 15.5 58 192-257 194-251 (668)
141 PRK12837 3-ketosteroid-delta-1 98.8 1.8E-07 3.9E-12 96.6 19.0 40 5-46 6-45 (513)
142 PRK06175 L-aspartate oxidase; 98.8 1E-07 2.2E-12 96.2 16.6 39 5-45 3-41 (433)
143 KOG2415 Electron transfer flav 98.8 1.6E-07 3.5E-12 88.8 16.2 44 4-48 74-123 (621)
144 PRK06134 putative FAD-binding 98.8 2.8E-07 6.1E-12 96.5 19.4 43 4-47 10-52 (581)
145 PF01134 GIDA: Glucose inhibit 98.8 1.7E-08 3.7E-13 97.8 9.4 41 211-252 109-150 (392)
146 PRK15317 alkyl hydroperoxide r 98.8 6.1E-08 1.3E-12 100.3 14.2 44 211-254 279-322 (517)
147 TIGR03140 AhpF alkyl hydropero 98.8 5E-08 1.1E-12 100.8 13.5 43 211-253 280-322 (515)
148 PRK06069 sdhA succinate dehydr 98.8 9.2E-08 2E-12 100.2 14.7 40 5-45 4-46 (577)
149 PRK12845 3-ketosteroid-delta-1 98.8 3.6E-07 7.8E-12 95.0 18.7 41 5-47 15-55 (564)
150 PRK07573 sdhA succinate dehydr 98.8 1.6E-07 3.5E-12 99.1 15.7 39 5-44 34-72 (640)
151 PRK12844 3-ketosteroid-delta-1 98.8 1.5E-07 3.3E-12 98.0 15.3 41 5-46 5-45 (557)
152 PRK07803 sdhA succinate dehydr 98.8 1.3E-07 2.8E-12 99.7 14.7 39 5-44 7-45 (626)
153 PRK12839 hypothetical protein; 98.8 7E-07 1.5E-11 93.1 19.9 44 3-47 5-48 (572)
154 TIGR01812 sdhA_frdA_Gneg succi 98.8 1.2E-07 2.5E-12 99.5 14.2 37 8-45 1-37 (566)
155 PRK06452 sdhA succinate dehydr 98.8 5.3E-07 1.2E-11 94.1 19.0 39 5-44 4-42 (566)
156 PRK06116 glutathione reductase 98.7 1.6E-07 3.4E-12 95.8 14.7 55 193-253 209-264 (450)
157 PLN02985 squalene monooxygenas 98.7 2.4E-07 5.2E-12 95.2 16.1 64 4-87 41-104 (514)
158 PRK12835 3-ketosteroid-delta-1 98.7 3.7E-07 8.1E-12 95.4 17.3 40 5-45 10-49 (584)
159 PRK07804 L-aspartate oxidase; 98.7 3.7E-07 8E-12 94.8 17.0 39 5-44 15-53 (541)
160 COG2509 Uncharacterized FAD-de 98.7 4.9E-06 1.1E-10 80.4 23.0 58 191-254 172-230 (486)
161 KOG2844 Dimethylglycine dehydr 98.7 1.3E-07 2.9E-12 94.4 12.7 57 191-254 186-243 (856)
162 PRK12834 putative FAD-binding 98.7 7.5E-07 1.6E-11 92.9 19.0 42 5-47 3-46 (549)
163 PTZ00367 squalene epoxidase; P 98.7 2.4E-07 5.2E-12 95.8 15.0 64 5-87 32-95 (567)
164 PRK05945 sdhA succinate dehydr 98.7 1.2E-07 2.5E-12 99.3 12.7 57 191-253 134-196 (575)
165 PRK06263 sdhA succinate dehydr 98.7 1.7E-07 3.7E-12 97.5 13.8 56 192-253 134-196 (543)
166 PTZ00139 Succinate dehydrogena 98.7 5.7E-07 1.2E-11 94.6 17.6 39 5-44 28-66 (617)
167 TIGR00551 nadB L-aspartate oxi 98.7 1.9E-07 4.1E-12 95.9 13.7 38 6-45 2-39 (488)
168 PRK07843 3-ketosteroid-delta-1 98.7 8.5E-07 1.8E-11 92.5 18.5 42 5-47 6-47 (557)
169 PF12831 FAD_oxidored: FAD dep 98.7 4.7E-09 1E-13 105.8 1.6 38 8-46 1-38 (428)
170 TIGR02485 CobZ_N-term precorri 98.7 9.8E-08 2.1E-12 96.7 11.1 57 189-251 120-180 (432)
171 PRK09078 sdhA succinate dehydr 98.7 3.6E-07 7.9E-12 95.9 15.1 39 5-44 11-49 (598)
172 COG0492 TrxB Thioredoxin reduc 98.7 2.6E-07 5.7E-12 87.7 12.6 42 211-254 74-115 (305)
173 PRK08958 sdhA succinate dehydr 98.7 2.4E-07 5.2E-12 96.9 13.4 39 5-44 6-44 (588)
174 KOG2404 Fumarate reductase, fl 98.7 1.9E-07 4.1E-12 85.5 10.4 41 6-47 9-49 (477)
175 PRK08401 L-aspartate oxidase; 98.7 9.2E-07 2E-11 90.3 16.9 56 191-254 119-175 (466)
176 PRK08626 fumarate reductase fl 98.7 5E-07 1.1E-11 95.6 15.3 39 5-44 4-42 (657)
177 PRK07395 L-aspartate oxidase; 98.6 3E-07 6.5E-12 95.4 13.3 40 4-45 7-46 (553)
178 PF06039 Mqo: Malate:quinone o 98.6 1.9E-06 4.2E-11 83.9 17.1 61 191-256 180-246 (488)
179 TIGR01176 fum_red_Fp fumarate 98.6 4.1E-07 8.9E-12 95.0 13.6 40 6-46 3-44 (580)
180 PRK05329 anaerobic glycerol-3- 98.6 4.6E-07 1E-11 90.1 12.8 55 193-253 260-317 (422)
181 PLN00128 Succinate dehydrogena 98.6 1.2E-06 2.6E-11 92.2 16.6 39 5-44 49-87 (635)
182 PRK08275 putative oxidoreducta 98.6 2.8E-07 6.1E-12 96.1 11.3 39 5-44 8-48 (554)
183 PRK08641 sdhA succinate dehydr 98.6 6.6E-07 1.4E-11 93.8 13.9 39 5-44 2-40 (589)
184 PRK12843 putative FAD-binding 98.6 3.7E-06 8E-11 88.1 19.4 42 5-47 15-56 (578)
185 PRK07057 sdhA succinate dehydr 98.6 1.4E-06 3.1E-11 91.3 16.1 39 5-44 11-49 (591)
186 PLN02815 L-aspartate oxidase 98.6 1.7E-06 3.7E-11 90.3 16.3 38 5-44 28-65 (594)
187 PRK09231 fumarate reductase fl 98.6 2E-06 4.3E-11 90.1 16.6 39 5-44 3-43 (582)
188 PRK08071 L-aspartate oxidase; 98.6 1.7E-06 3.7E-11 89.2 15.9 39 5-45 2-40 (510)
189 PRK06854 adenylylsulfate reduc 98.6 2E-06 4.4E-11 90.4 16.6 37 6-43 11-49 (608)
190 PTZ00306 NADH-dependent fumara 98.6 7.3E-07 1.6E-11 100.4 14.1 42 4-46 407-448 (1167)
191 PF04820 Trp_halogenase: Trypt 98.6 1.4E-06 2.9E-11 88.4 14.7 58 188-255 153-212 (454)
192 TIGR01811 sdhA_Bsu succinate d 98.5 6E-07 1.3E-11 94.2 12.3 35 9-44 1-35 (603)
193 PRK08205 sdhA succinate dehydr 98.5 2.6E-06 5.7E-11 89.4 17.0 38 5-44 4-41 (583)
194 PRK09077 L-aspartate oxidase; 98.5 3.3E-06 7.2E-11 87.7 16.6 40 4-45 6-45 (536)
195 PRK07512 L-aspartate oxidase; 98.5 1.1E-06 2.3E-11 90.7 12.3 58 191-253 135-196 (513)
196 PRK08255 salicylyl-CoA 5-hydro 98.5 1.1E-05 2.4E-10 87.4 19.7 33 8-41 2-36 (765)
197 TIGR00136 gidA glucose-inhibit 98.4 2.8E-06 6.1E-11 87.1 13.5 38 7-45 1-38 (617)
198 PRK12779 putative bifunctional 98.4 2.7E-07 5.8E-12 100.9 6.4 42 5-47 305-346 (944)
199 TIGR03315 Se_ygfK putative sel 98.4 3.6E-07 7.7E-12 99.2 6.4 43 5-48 536-578 (1012)
200 COG1148 HdrA Heterodisulfide r 98.4 3.7E-07 7.9E-12 88.2 4.7 43 6-49 124-166 (622)
201 TIGR03378 glycerol3P_GlpB glyc 98.3 8.7E-06 1.9E-10 80.2 13.9 56 192-253 263-321 (419)
202 PRK06115 dihydrolipoamide dehy 98.3 5.6E-07 1.2E-11 92.0 5.7 42 6-48 3-44 (466)
203 PRK12831 putative oxidoreducta 98.3 7.4E-07 1.6E-11 90.8 6.4 43 4-47 138-180 (464)
204 PLN02852 ferredoxin-NADP+ redu 98.3 8E-07 1.7E-11 89.9 6.5 43 5-48 25-69 (491)
205 TIGR01350 lipoamide_DH dihydro 98.3 6.7E-07 1.4E-11 91.6 5.7 41 6-48 1-41 (461)
206 PRK09853 putative selenate red 98.3 7.4E-07 1.6E-11 96.3 5.9 43 5-48 538-580 (1019)
207 PRK14694 putative mercuric red 98.3 8.1E-07 1.8E-11 91.0 6.0 46 1-48 1-46 (468)
208 KOG2665 Predicted FAD-dependen 98.3 3.5E-06 7.6E-11 77.2 9.2 56 191-252 195-255 (453)
209 PRK07845 flavoprotein disulfid 98.3 1E-05 2.2E-10 82.8 13.7 40 6-47 1-40 (466)
210 PRK07251 pyridine nucleotide-d 98.3 9.3E-07 2E-11 89.8 6.0 43 5-48 2-45 (438)
211 PTZ00188 adrenodoxin reductase 98.3 1.2E-06 2.7E-11 87.2 6.4 45 4-49 37-82 (506)
212 PRK08010 pyridine nucleotide-d 98.3 1E-06 2.2E-11 89.6 6.0 43 5-48 2-45 (441)
213 TIGR01424 gluta_reduc_2 glutat 98.3 8.9E-07 1.9E-11 90.1 5.5 41 6-48 2-42 (446)
214 PRK10262 thioredoxin reductase 98.3 1.1E-06 2.4E-11 85.4 5.9 45 1-47 1-45 (321)
215 TIGR01421 gluta_reduc_1 glutat 98.3 9.9E-07 2.2E-11 89.7 5.2 41 5-47 1-41 (450)
216 TIGR03143 AhpF_homolog putativ 98.2 1.7E-06 3.8E-11 90.2 6.5 42 5-48 3-44 (555)
217 PRK06467 dihydrolipoamide dehy 98.2 1.4E-06 3.1E-11 89.1 5.7 42 5-47 3-44 (471)
218 PRK06416 dihydrolipoamide dehy 98.2 1.3E-06 2.9E-11 89.3 5.4 42 5-48 3-44 (462)
219 TIGR02061 aprA adenosine phosp 98.2 1.2E-05 2.5E-10 84.2 12.4 33 8-41 1-37 (614)
220 PRK06292 dihydrolipoamide dehy 98.2 1.5E-06 3.2E-11 89.0 5.5 41 5-47 2-42 (460)
221 PRK12775 putative trifunctiona 98.2 1.6E-06 3.4E-11 95.9 5.8 42 5-47 429-470 (1006)
222 PRK12769 putative oxidoreducta 98.2 1.7E-06 3.8E-11 92.1 6.0 42 5-47 326-367 (654)
223 PRK05976 dihydrolipoamide dehy 98.2 1.7E-06 3.6E-11 88.8 5.7 42 5-48 3-44 (472)
224 COG5044 MRS6 RAB proteins gera 98.2 9.8E-06 2.1E-10 76.0 9.8 230 1-250 1-280 (434)
225 TIGR01316 gltA glutamate synth 98.2 2.3E-06 4.9E-11 87.0 6.1 42 5-47 132-173 (449)
226 PRK14727 putative mercuric red 98.2 2.4E-06 5.1E-11 87.7 6.2 44 4-48 14-57 (479)
227 PRK06370 mercuric reductase; V 98.2 2.2E-06 4.7E-11 87.8 5.7 41 5-47 4-44 (463)
228 PRK12810 gltD glutamate syntha 98.2 3E-06 6.4E-11 86.8 6.4 42 5-47 142-183 (471)
229 TIGR01810 betA choline dehydro 98.1 7E-05 1.5E-09 78.1 16.3 33 8-41 1-34 (532)
230 PRK12778 putative bifunctional 98.1 3.1E-06 6.7E-11 91.7 6.4 42 5-47 430-471 (752)
231 PRK07818 dihydrolipoamide dehy 98.1 3E-06 6.6E-11 86.7 5.8 42 5-48 3-44 (466)
232 COG1252 Ndh NADH dehydrogenase 98.1 0.00012 2.7E-09 71.7 16.5 36 5-41 2-39 (405)
233 PTZ00058 glutathione reductase 98.1 2.9E-06 6.3E-11 87.8 5.6 43 4-48 46-88 (561)
234 COG0493 GltD NADPH-dependent g 98.1 3.1E-06 6.7E-11 84.8 5.4 43 5-48 122-164 (457)
235 PRK12814 putative NADPH-depend 98.1 3.9E-06 8.4E-11 89.2 6.5 42 5-47 192-233 (652)
236 TIGR02053 MerA mercuric reduct 98.1 3.2E-06 6.9E-11 86.6 5.2 39 7-47 1-39 (463)
237 PRK13748 putative mercuric red 98.1 3.7E-06 8E-11 88.4 5.7 42 5-48 97-138 (561)
238 PRK05335 tRNA (uracil-5-)-meth 98.1 4.2E-06 9E-11 82.2 5.5 37 6-43 2-38 (436)
239 PRK12809 putative oxidoreducta 98.1 4.4E-06 9.5E-11 88.7 6.0 42 5-47 309-350 (639)
240 PRK13800 putative oxidoreducta 98.1 6.9E-05 1.5E-09 82.7 15.5 36 5-41 12-47 (897)
241 PRK11749 dihydropyrimidine deh 98.1 5E-06 1.1E-10 84.9 6.0 42 5-47 139-180 (457)
242 TIGR01318 gltD_gamma_fam gluta 98.1 5.2E-06 1.1E-10 84.7 6.0 42 5-47 140-181 (467)
243 PRK06567 putative bifunctional 98.1 4.3E-06 9.4E-11 89.5 5.5 41 4-45 381-421 (1028)
244 TIGR02352 thiamin_ThiO glycine 98.0 0.0034 7.4E-08 61.3 25.4 58 191-255 136-194 (337)
245 PRK09564 coenzyme A disulfide 98.0 3.7E-05 8.1E-10 78.4 11.8 43 211-253 69-114 (444)
246 KOG1439 RAB proteins geranylge 98.0 2E-05 4.4E-10 74.8 8.9 223 1-248 1-283 (440)
247 PRK06327 dihydrolipoamide dehy 98.0 5.1E-06 1.1E-10 85.2 5.2 42 5-47 3-50 (475)
248 KOG1335 Dihydrolipoamide dehyd 98.0 7.2E-05 1.6E-09 70.6 12.1 43 5-48 38-80 (506)
249 PTZ00052 thioredoxin reductase 98.0 5.9E-06 1.3E-10 85.1 5.5 42 6-48 5-54 (499)
250 TIGR01372 soxA sarcosine oxida 98.0 7E-06 1.5E-10 91.2 5.9 42 6-48 163-204 (985)
251 PLN02507 glutathione reductase 98.0 7.8E-06 1.7E-10 84.1 5.7 42 6-48 25-75 (499)
252 KOG0399 Glutamate synthase [Am 98.0 7.6E-06 1.7E-10 86.3 5.3 42 5-47 1784-1825(2142)
253 TIGR01317 GOGAT_sm_gam glutama 98.0 9.8E-06 2.1E-10 83.1 6.1 41 6-47 143-183 (485)
254 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 8.4E-06 1.8E-10 80.6 5.2 37 7-44 1-37 (433)
255 COG1249 Lpd Pyruvate/2-oxoglut 98.0 1.2E-05 2.5E-10 80.7 6.0 43 5-48 3-45 (454)
256 COG0029 NadB Aspartate oxidase 97.9 0.00021 4.5E-09 70.3 14.0 61 192-257 133-200 (518)
257 TIGR01423 trypano_reduc trypan 97.9 1.2E-05 2.7E-10 82.2 5.7 43 5-48 2-53 (486)
258 PRK09754 phenylpropionate diox 97.9 0.0001 2.2E-09 73.9 11.9 42 211-253 199-240 (396)
259 PRK12771 putative glutamate sy 97.9 1.5E-05 3.3E-10 83.5 6.1 42 5-47 136-177 (564)
260 COG3573 Predicted oxidoreducta 97.9 2.7E-05 5.9E-10 72.0 6.5 42 5-47 4-47 (552)
261 PF00070 Pyr_redox: Pyridine n 97.9 2.4E-05 5.2E-10 58.7 5.1 34 8-42 1-34 (80)
262 KOG2960 Protein involved in th 97.9 4.9E-06 1.1E-10 71.8 1.1 67 6-85 76-144 (328)
263 PLN02546 glutathione reductase 97.9 1.7E-05 3.7E-10 82.3 5.3 42 6-48 79-129 (558)
264 PRK12770 putative glutamate sy 97.8 2.8E-05 6E-10 76.6 6.4 43 5-48 17-59 (352)
265 PRK04965 NADH:flavorubredoxin 97.8 0.00017 3.6E-09 71.9 12.0 42 211-252 196-237 (377)
266 COG4529 Uncharacterized protei 97.8 0.00021 4.5E-09 70.3 12.2 41 6-46 1-43 (474)
267 PF00732 GMC_oxred_N: GMC oxid 97.8 1.2E-05 2.6E-10 77.3 3.5 35 7-42 1-36 (296)
268 TIGR03197 MnmC_Cterm tRNA U-34 97.8 0.00023 5E-09 71.0 12.5 57 191-254 134-190 (381)
269 PF07992 Pyr_redox_2: Pyridine 97.8 2.2E-05 4.7E-10 70.6 4.6 32 8-40 1-32 (201)
270 PTZ00153 lipoamide dehydrogena 97.8 2.5E-05 5.5E-10 82.2 5.6 43 5-48 115-158 (659)
271 PRK13984 putative oxidoreducta 97.8 3.2E-05 6.9E-10 81.9 6.0 42 5-47 282-323 (604)
272 PRK14989 nitrite reductase sub 97.8 0.0003 6.6E-09 76.6 13.5 43 211-253 200-244 (847)
273 TIGR02462 pyranose_ox pyranose 97.8 2.8E-05 6.1E-10 79.7 5.1 37 7-44 1-37 (544)
274 PF07156 Prenylcys_lyase: Pren 97.8 0.00045 9.7E-09 67.5 13.2 65 182-256 118-189 (368)
275 TIGR01350 lipoamide_DH dihydro 97.7 0.00038 8.2E-09 71.4 12.6 44 211-254 224-269 (461)
276 PRK02106 choline dehydrogenase 97.7 4.5E-05 9.8E-10 80.0 5.4 36 5-41 4-40 (560)
277 TIGR01438 TGR thioredoxin and 97.7 4.6E-05 9.9E-10 78.2 5.2 41 6-47 2-50 (484)
278 KOG1298 Squalene monooxygenase 97.7 4.7E-05 1E-09 71.9 4.7 34 5-39 44-77 (509)
279 PRK06416 dihydrolipoamide dehy 97.7 0.00043 9.2E-09 71.0 12.3 44 211-254 226-272 (462)
280 COG3075 GlpB Anaerobic glycero 97.7 4.7E-05 1E-09 70.5 4.5 33 6-39 2-34 (421)
281 KOG2853 Possible oxidoreductas 97.7 4.7E-05 1E-09 70.7 4.3 38 4-42 84-125 (509)
282 COG4716 Myosin-crossreactive a 97.6 0.00013 2.8E-09 68.7 6.9 70 5-80 21-96 (587)
283 PRK06912 acoL dihydrolipoamide 97.6 5.4E-05 1.2E-09 77.4 4.7 38 8-47 2-39 (458)
284 COG1053 SdhA Succinate dehydro 97.6 6.8E-05 1.5E-09 77.4 5.2 42 4-46 4-45 (562)
285 TIGR02374 nitri_red_nirB nitri 97.6 0.00026 5.6E-09 77.0 9.6 41 211-253 67-107 (785)
286 COG1249 Lpd Pyruvate/2-oxoglut 97.6 0.00098 2.1E-08 67.0 12.5 43 211-253 227-271 (454)
287 KOG1800 Ferredoxin/adrenodoxin 97.6 0.00011 2.5E-09 69.3 5.4 45 5-50 19-65 (468)
288 PRK07846 mycothione reductase; 97.5 0.00085 1.8E-08 68.3 12.1 44 211-254 219-262 (451)
289 PRK07845 flavoprotein disulfid 97.5 0.001 2.3E-08 68.1 12.7 43 211-253 231-273 (466)
290 PRK07251 pyridine nucleotide-d 97.5 0.0011 2.3E-08 67.5 12.6 42 211-253 211-252 (438)
291 TIGR01421 gluta_reduc_1 glutat 97.5 0.0011 2.4E-08 67.5 12.5 43 211-253 220-264 (450)
292 TIGR01424 gluta_reduc_2 glutat 97.5 0.0014 3E-08 66.8 12.6 43 211-253 220-262 (446)
293 TIGR02374 nitri_red_nirB nitri 97.5 0.00093 2E-08 72.8 11.9 42 211-252 195-236 (785)
294 PLN02507 glutathione reductase 97.5 0.0016 3.4E-08 67.2 13.0 43 211-253 257-299 (499)
295 PF13434 K_oxygenase: L-lysine 97.5 0.00034 7.3E-09 68.1 7.6 35 6-41 2-37 (341)
296 KOG2852 Possible oxidoreductas 97.5 4.7E-05 1E-09 69.1 1.5 49 5-56 9-63 (380)
297 PRK06327 dihydrolipoamide dehy 97.4 0.0014 3E-08 67.4 12.3 34 6-40 183-216 (475)
298 PRK07818 dihydrolipoamide dehy 97.4 0.0015 3.3E-08 67.0 12.5 34 6-40 172-205 (466)
299 PRK06370 mercuric reductase; V 97.4 0.0016 3.5E-08 66.7 12.5 35 6-41 171-205 (463)
300 COG2303 BetA Choline dehydroge 97.4 0.00015 3.2E-09 75.2 4.6 36 4-40 5-40 (542)
301 COG0445 GidA Flavin-dependent 97.4 0.0041 8.8E-08 62.2 13.8 34 5-39 3-36 (621)
302 TIGR03452 mycothione_red mycot 97.4 0.0022 4.7E-08 65.5 12.7 43 211-253 222-264 (452)
303 PRK05976 dihydrolipoamide dehy 97.4 0.0023 5E-08 65.7 12.8 35 6-41 180-214 (472)
304 PRK06912 acoL dihydrolipoamide 97.3 0.0028 6.1E-08 64.8 13.1 34 6-40 170-203 (458)
305 TIGR02053 MerA mercuric reduct 97.3 0.0024 5.3E-08 65.4 12.4 35 6-41 166-200 (463)
306 PRK06115 dihydrolipoamide dehy 97.3 0.0027 5.9E-08 65.0 12.6 35 6-41 174-208 (466)
307 TIGR03452 mycothione_red mycot 97.3 0.00031 6.7E-09 71.6 5.5 40 5-48 1-40 (452)
308 PRK08010 pyridine nucleotide-d 97.3 0.0032 7E-08 64.1 12.8 42 211-253 212-253 (441)
309 PRK09754 phenylpropionate diox 97.3 0.00036 7.9E-09 69.9 5.5 42 211-254 71-112 (396)
310 PRK13512 coenzyme A disulfide 97.3 0.00034 7.3E-09 71.1 5.1 36 7-43 2-39 (438)
311 TIGR03385 CoA_CoA_reduc CoA-di 97.2 0.0029 6.4E-08 64.1 11.9 34 6-40 137-170 (427)
312 PRK09564 coenzyme A disulfide 97.2 0.003 6.4E-08 64.5 11.9 34 6-40 149-182 (444)
313 KOG0042 Glycerol-3-phosphate d 97.2 0.0046 9.9E-08 61.5 12.3 42 5-47 66-107 (680)
314 TIGR03862 flavo_PP4765 unchara 97.2 0.0024 5.1E-08 62.6 10.6 57 188-252 82-139 (376)
315 PRK07846 mycothione reductase; 97.2 0.00031 6.7E-09 71.6 4.6 38 6-47 1-38 (451)
316 PRK14727 putative mercuric red 97.2 0.0044 9.4E-08 63.8 12.8 43 211-254 241-283 (479)
317 TIGR01423 trypano_reduc trypan 97.2 0.0045 9.8E-08 63.5 12.4 43 211-253 244-287 (486)
318 PRK14694 putative mercuric red 97.1 0.0066 1.4E-07 62.3 12.7 43 211-254 231-273 (468)
319 PRK13748 putative mercuric red 97.1 0.0054 1.2E-07 64.6 12.4 42 211-253 323-364 (561)
320 PTZ00052 thioredoxin reductase 97.1 0.0064 1.4E-07 62.8 12.6 44 211-254 235-278 (499)
321 PTZ00318 NADH dehydrogenase-li 97.1 0.00056 1.2E-08 69.1 4.7 37 4-41 8-44 (424)
322 TIGR03377 glycerol3P_GlpA glyc 97.0 0.0068 1.5E-07 63.0 11.8 58 191-254 127-190 (516)
323 PLN02785 Protein HOTHEAD 96.9 0.00097 2.1E-08 69.8 5.0 34 5-40 54-87 (587)
324 COG0446 HcaD Uncharacterized N 96.9 0.00089 1.9E-08 67.4 4.6 40 6-46 136-175 (415)
325 COG1206 Gid NAD(FAD)-utilizing 96.9 0.00086 1.9E-08 62.3 4.0 36 6-42 3-38 (439)
326 TIGR01438 TGR thioredoxin and 96.9 0.014 2.9E-07 60.1 12.6 43 211-253 233-278 (484)
327 KOG2311 NAD/FAD-utilizing prot 96.8 0.0077 1.7E-07 59.0 9.7 40 4-44 26-66 (679)
328 PRK04965 NADH:flavorubredoxin 96.8 0.002 4.3E-08 64.2 5.5 40 211-253 71-110 (377)
329 KOG0405 Pyridine nucleotide-di 96.8 0.0021 4.6E-08 60.2 5.1 44 4-48 18-61 (478)
330 PTZ00318 NADH dehydrogenase-li 96.6 0.019 4.1E-07 58.1 11.6 38 211-252 241-278 (424)
331 KOG4716 Thioredoxin reductase 96.6 0.0023 4.9E-08 59.8 4.2 34 4-38 17-50 (503)
332 TIGR03169 Nterm_to_SelD pyridi 96.3 0.0038 8.3E-08 61.8 4.1 33 8-41 1-36 (364)
333 PRK01438 murD UDP-N-acetylmura 96.1 0.0071 1.5E-07 62.3 5.0 34 6-40 16-49 (480)
334 PF01210 NAD_Gly3P_dh_N: NAD-d 95.9 0.0081 1.7E-07 51.5 3.9 31 8-39 1-31 (157)
335 PRK02705 murD UDP-N-acetylmura 95.7 0.012 2.6E-07 60.3 4.6 34 8-42 2-35 (459)
336 PF02737 3HCDH_N: 3-hydroxyacy 95.7 0.014 3E-07 51.3 4.4 32 8-40 1-32 (180)
337 KOG0404 Thioredoxin reductase 95.7 0.022 4.7E-07 50.3 5.2 44 6-50 8-55 (322)
338 COG3634 AhpF Alkyl hydroperoxi 95.5 0.008 1.7E-07 56.5 2.4 39 4-45 209-247 (520)
339 KOG3855 Monooxygenase involved 95.5 0.014 3.1E-07 56.3 3.8 70 5-87 35-110 (481)
340 KOG1238 Glucose dehydrogenase/ 95.5 0.016 3.5E-07 59.3 4.4 38 4-42 55-93 (623)
341 KOG3923 D-aspartate oxidase [A 95.5 0.013 2.7E-07 54.1 3.3 33 5-38 2-41 (342)
342 PF01488 Shikimate_DH: Shikima 95.4 0.029 6.3E-07 46.7 5.1 36 4-39 10-45 (135)
343 PRK06467 dihydrolipoamide dehy 95.4 0.022 4.9E-07 58.4 5.2 36 6-42 174-209 (471)
344 PRK07066 3-hydroxybutyryl-CoA 95.3 0.025 5.4E-07 54.4 5.1 34 6-40 7-40 (321)
345 PRK06292 dihydrolipoamide dehy 95.2 0.027 5.8E-07 57.7 5.4 36 6-42 169-204 (460)
346 COG0686 Ald Alanine dehydrogen 95.2 0.025 5.3E-07 52.6 4.3 44 5-49 167-218 (371)
347 PRK14106 murD UDP-N-acetylmura 95.2 0.027 5.9E-07 57.5 5.3 35 5-40 4-38 (450)
348 PRK07819 3-hydroxybutyryl-CoA 95.2 0.026 5.5E-07 53.7 4.7 34 6-40 5-38 (286)
349 PRK05249 soluble pyridine nucl 95.2 0.028 6.1E-07 57.6 5.2 43 211-253 229-271 (461)
350 PRK13512 coenzyme A disulfide 95.2 0.026 5.5E-07 57.4 4.8 36 6-42 148-183 (438)
351 PRK05675 sdhA succinate dehydr 95.0 0.2 4.4E-06 52.6 11.2 58 191-254 125-189 (570)
352 PRK06129 3-hydroxyacyl-CoA deh 95.0 0.029 6.3E-07 54.0 4.5 33 7-40 3-35 (308)
353 PF01262 AlaDh_PNT_C: Alanine 95.0 0.037 8E-07 48.0 4.7 34 5-39 19-52 (168)
354 PF02558 ApbA: Ketopantoate re 94.9 0.043 9.3E-07 46.6 4.8 31 9-40 1-31 (151)
355 PF03721 UDPG_MGDP_dh_N: UDP-g 94.8 0.03 6.6E-07 49.3 3.6 32 8-40 2-33 (185)
356 TIGR03140 AhpF alkyl hydropero 94.7 0.042 9.1E-07 57.1 5.1 34 6-40 352-385 (515)
357 KOG1336 Monodehydroascorbate/f 94.7 0.32 7E-06 48.2 10.7 46 211-256 268-315 (478)
358 PRK14989 nitrite reductase sub 94.6 0.042 9.1E-07 60.2 5.0 37 6-43 145-181 (847)
359 PRK08293 3-hydroxybutyryl-CoA 94.6 0.044 9.6E-07 52.2 4.6 33 6-39 3-35 (287)
360 PRK06249 2-dehydropantoate 2-r 94.6 0.058 1.2E-06 52.1 5.4 38 1-40 1-38 (313)
361 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.056 1.2E-06 46.7 4.7 35 4-39 42-77 (168)
362 PTZ00058 glutathione reductase 94.5 0.049 1.1E-06 56.9 5.0 35 6-41 237-271 (561)
363 PTZ00153 lipoamide dehydrogena 94.5 0.051 1.1E-06 57.7 5.2 36 6-42 312-347 (659)
364 KOG2755 Oxidoreductase [Genera 94.5 0.026 5.5E-07 51.1 2.5 34 8-41 1-35 (334)
365 PRK09260 3-hydroxybutyryl-CoA 94.5 0.042 9.2E-07 52.4 4.2 33 7-40 2-34 (288)
366 TIGR02354 thiF_fam2 thiamine b 94.4 0.064 1.4E-06 47.9 4.9 35 5-39 20-54 (200)
367 TIGR01316 gltA glutamate synth 94.3 0.062 1.3E-06 54.8 5.2 34 6-40 272-305 (449)
368 PRK15317 alkyl hydroperoxide r 94.3 0.06 1.3E-06 56.0 5.1 34 6-40 351-384 (517)
369 TIGR01470 cysG_Nterm siroheme 94.3 0.07 1.5E-06 47.8 4.9 34 5-39 8-41 (205)
370 PRK01368 murD UDP-N-acetylmura 94.3 0.053 1.1E-06 55.2 4.6 37 1-39 1-37 (454)
371 PRK10262 thioredoxin reductase 94.2 0.068 1.5E-06 51.9 5.1 34 6-40 146-179 (321)
372 PRK06116 glutathione reductase 94.2 0.067 1.5E-06 54.6 5.2 36 6-42 167-202 (450)
373 COG1251 NirB NAD(P)H-nitrite r 94.2 0.16 3.4E-06 53.1 7.6 42 211-252 200-241 (793)
374 PRK07530 3-hydroxybutyryl-CoA 94.2 0.074 1.6E-06 50.8 5.1 33 6-39 4-36 (292)
375 COG0569 TrkA K+ transport syst 94.1 0.065 1.4E-06 48.9 4.4 67 7-87 1-68 (225)
376 TIGR03143 AhpF_homolog putativ 94.1 0.067 1.5E-06 56.1 5.0 36 6-42 143-178 (555)
377 PRK15116 sulfur acceptor prote 94.0 0.061 1.3E-06 50.1 3.9 35 5-39 29-63 (268)
378 PRK05808 3-hydroxybutyryl-CoA 93.9 0.074 1.6E-06 50.5 4.5 34 6-40 3-36 (282)
379 PRK12831 putative oxidoreducta 93.9 0.083 1.8E-06 54.1 5.1 35 5-40 280-314 (464)
380 COG3634 AhpF Alkyl hydroperoxi 93.9 0.049 1.1E-06 51.4 3.1 34 5-39 353-386 (520)
381 PF00899 ThiF: ThiF family; I 93.9 0.069 1.5E-06 44.4 3.7 34 6-39 2-35 (135)
382 PLN02546 glutathione reductase 93.8 0.086 1.9E-06 55.0 5.2 36 6-42 252-287 (558)
383 PRK04308 murD UDP-N-acetylmura 93.8 0.27 5.9E-06 50.1 8.7 36 5-41 4-39 (445)
384 COG0771 MurD UDP-N-acetylmuram 93.8 0.075 1.6E-06 53.1 4.4 37 5-42 6-42 (448)
385 PRK04690 murD UDP-N-acetylmura 93.8 0.075 1.6E-06 54.4 4.6 34 6-40 8-41 (468)
386 PRK06035 3-hydroxyacyl-CoA deh 93.8 0.072 1.6E-06 50.9 4.2 33 7-40 4-36 (291)
387 PTZ00082 L-lactate dehydrogena 93.7 0.12 2.6E-06 49.9 5.6 41 1-41 1-41 (321)
388 PRK12770 putative glutamate sy 93.7 0.094 2E-06 51.6 5.0 35 6-40 172-206 (352)
389 PLN02545 3-hydroxybutyryl-CoA 93.6 0.11 2.3E-06 49.8 5.0 34 6-40 4-37 (295)
390 COG1748 LYS9 Saccharopine dehy 93.5 0.13 2.8E-06 50.5 5.4 45 6-51 1-54 (389)
391 PRK12549 shikimate 5-dehydroge 93.5 0.11 2.3E-06 49.3 4.8 35 5-39 126-160 (284)
392 TIGR01292 TRX_reduct thioredox 93.5 0.11 2.4E-06 49.7 5.0 34 6-40 141-174 (300)
393 PRK08268 3-hydroxy-acyl-CoA de 93.5 0.11 2.4E-06 53.5 5.2 35 5-40 6-40 (507)
394 PRK11064 wecC UDP-N-acetyl-D-m 93.5 0.089 1.9E-06 52.9 4.4 34 6-40 3-36 (415)
395 PRK06130 3-hydroxybutyryl-CoA 93.5 0.11 2.3E-06 50.3 4.8 34 6-40 4-37 (311)
396 cd05311 NAD_bind_2_malic_enz N 93.4 0.12 2.6E-06 47.1 4.8 35 5-39 24-60 (226)
397 COG3486 IucD Lysine/ornithine 93.4 0.62 1.3E-05 45.4 9.6 37 5-41 4-40 (436)
398 TIGR00518 alaDH alanine dehydr 93.3 0.12 2.5E-06 51.1 5.0 34 5-39 166-199 (370)
399 PF13241 NAD_binding_7: Putati 93.3 0.069 1.5E-06 42.0 2.7 35 4-39 5-39 (103)
400 PRK04148 hypothetical protein; 93.3 0.086 1.9E-06 43.3 3.3 34 6-41 17-50 (134)
401 PRK06718 precorrin-2 dehydroge 93.3 0.13 2.9E-06 45.9 4.9 35 4-39 8-42 (202)
402 PRK08229 2-dehydropantoate 2-r 93.2 0.11 2.4E-06 50.8 4.7 32 7-39 3-34 (341)
403 PRK11749 dihydropyrimidine deh 93.2 0.13 2.9E-06 52.6 5.3 36 5-40 272-307 (457)
404 KOG3851 Sulfide:quinone oxidor 93.2 0.084 1.8E-06 49.3 3.3 37 4-40 37-74 (446)
405 PRK05708 2-dehydropantoate 2-r 93.2 0.14 3.1E-06 49.2 5.1 32 7-39 3-34 (305)
406 PRK00421 murC UDP-N-acetylmura 93.2 0.11 2.3E-06 53.4 4.5 38 2-40 3-41 (461)
407 PRK06719 precorrin-2 dehydroge 92.9 0.17 3.6E-06 43.3 4.6 33 4-37 11-43 (157)
408 PRK01710 murD UDP-N-acetylmura 92.8 0.14 2.9E-06 52.5 4.7 34 6-40 14-47 (458)
409 cd05191 NAD_bind_amino_acid_DH 92.8 0.22 4.8E-06 37.6 4.7 34 5-38 22-55 (86)
410 PRK06522 2-dehydropantoate 2-r 92.8 0.13 2.9E-06 49.3 4.4 31 8-39 2-32 (304)
411 PRK08644 thiamine biosynthesis 92.7 0.2 4.3E-06 45.2 5.1 35 5-39 27-61 (212)
412 COG1004 Ugd Predicted UDP-gluc 92.6 0.15 3.2E-06 49.4 4.3 32 8-40 2-33 (414)
413 KOG4405 GDP dissociation inhib 92.6 0.13 2.8E-06 49.6 3.9 48 4-52 6-53 (547)
414 PRK02472 murD UDP-N-acetylmura 92.6 0.16 3.5E-06 51.8 5.0 35 5-40 4-38 (447)
415 PRK03369 murD UDP-N-acetylmura 92.6 0.15 3.2E-06 52.6 4.6 34 5-39 11-44 (488)
416 PRK12921 2-dehydropantoate 2-r 92.5 0.16 3.4E-06 48.9 4.5 30 8-38 2-31 (305)
417 PRK07502 cyclohexadienyl dehyd 92.5 0.18 4E-06 48.5 4.9 39 1-39 1-40 (307)
418 cd01487 E1_ThiF_like E1_ThiF_l 92.4 0.23 4.9E-06 43.3 4.9 32 8-39 1-32 (174)
419 PF00070 Pyr_redox: Pyridine n 92.4 0.29 6.3E-06 36.3 4.9 39 194-238 42-80 (80)
420 TIGR01763 MalateDH_bact malate 92.4 0.21 4.6E-06 47.9 5.1 34 7-40 2-35 (305)
421 PF03446 NAD_binding_2: NAD bi 92.4 0.19 4.1E-06 43.3 4.3 33 6-39 1-33 (163)
422 cd05292 LDH_2 A subgroup of L- 92.3 0.18 3.9E-06 48.5 4.5 33 8-40 2-35 (308)
423 PRK12548 shikimate 5-dehydroge 92.3 0.26 5.6E-06 46.9 5.6 35 5-39 125-159 (289)
424 TIGR02356 adenyl_thiF thiazole 92.2 0.25 5.5E-06 44.2 5.1 35 5-39 20-54 (202)
425 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.2 0.16 3.5E-06 52.3 4.2 34 6-40 5-38 (503)
426 cd00401 AdoHcyase S-adenosyl-L 92.1 0.21 4.6E-06 49.7 4.8 35 5-40 201-235 (413)
427 TIGR01809 Shik-DH-AROM shikima 92.1 0.24 5.1E-06 47.0 5.0 35 5-39 124-158 (282)
428 PRK09424 pntA NAD(P) transhydr 92.1 0.18 4E-06 51.5 4.4 34 5-39 164-197 (509)
429 TIGR02355 moeB molybdopterin s 92.0 0.26 5.6E-06 45.5 5.0 35 5-39 23-57 (240)
430 PRK12778 putative bifunctional 92.0 0.23 5E-06 54.3 5.4 35 6-40 570-604 (752)
431 PRK05690 molybdopterin biosynt 91.9 0.25 5.3E-06 45.8 4.8 35 5-39 31-65 (245)
432 PRK00094 gpsA NAD(P)H-dependen 91.9 0.23 5E-06 48.2 4.8 31 8-39 3-33 (325)
433 PRK12475 thiamine/molybdopteri 91.8 0.26 5.5E-06 48.0 5.0 35 5-39 23-57 (338)
434 PRK08328 hypothetical protein; 91.8 0.26 5.7E-06 45.1 4.9 34 5-38 26-59 (231)
435 PRK12814 putative NADPH-depend 91.8 0.23 5.1E-06 53.1 5.1 36 5-40 322-357 (652)
436 PRK07688 thiamine/molybdopteri 91.6 0.29 6.3E-06 47.6 5.2 35 5-39 23-57 (339)
437 TIGR03026 NDP-sugDHase nucleot 91.6 0.18 4E-06 50.7 3.9 33 8-41 2-34 (411)
438 PRK08306 dipicolinate synthase 91.6 0.28 6.1E-06 46.8 4.9 35 5-40 151-185 (296)
439 PRK14027 quinate/shikimate deh 91.5 0.3 6.4E-06 46.2 4.9 35 5-39 126-160 (283)
440 TIGR01317 GOGAT_sm_gam glutama 91.5 0.31 6.6E-06 50.3 5.4 37 5-41 282-318 (485)
441 KOG2304 3-hydroxyacyl-CoA dehy 91.5 0.21 4.5E-06 44.3 3.4 35 5-40 10-44 (298)
442 PRK11730 fadB multifunctional 91.4 0.19 4.2E-06 54.2 4.1 33 7-40 314-346 (715)
443 cd00757 ThiF_MoeB_HesA_family 91.4 0.3 6.6E-06 44.7 4.8 35 5-39 20-54 (228)
444 cd01492 Aos1_SUMO Ubiquitin ac 91.4 0.31 6.6E-06 43.5 4.7 35 5-39 20-54 (197)
445 PRK00141 murD UDP-N-acetylmura 91.3 0.26 5.7E-06 50.6 4.8 34 5-39 14-47 (473)
446 cd01485 E1-1_like Ubiquitin ac 91.3 0.32 7E-06 43.4 4.7 35 5-39 18-52 (198)
447 PRK14619 NAD(P)H-dependent gly 91.3 0.33 7.1E-06 46.8 5.1 34 6-40 4-37 (308)
448 PRK14618 NAD(P)H-dependent gly 91.3 0.32 7E-06 47.3 5.1 33 6-39 4-36 (328)
449 PRK00066 ldh L-lactate dehydro 91.3 0.39 8.4E-06 46.3 5.6 40 1-40 1-41 (315)
450 PRK03806 murD UDP-N-acetylmura 91.2 0.29 6.3E-06 49.8 5.0 39 1-40 1-39 (438)
451 cd01483 E1_enzyme_family Super 91.1 0.37 8.1E-06 40.4 4.7 32 8-39 1-32 (143)
452 COG1250 FadB 3-hydroxyacyl-CoA 91.0 0.29 6.3E-06 46.5 4.3 33 6-39 3-35 (307)
453 PRK07531 bifunctional 3-hydrox 91.0 0.3 6.4E-06 50.4 4.8 32 7-39 5-36 (495)
454 PRK02006 murD UDP-N-acetylmura 91.0 0.27 5.9E-06 50.9 4.6 35 5-40 6-40 (498)
455 cd01075 NAD_bind_Leu_Phe_Val_D 91.0 0.41 8.9E-06 42.8 5.1 35 4-39 26-60 (200)
456 TIGR02437 FadB fatty oxidation 90.9 0.27 5.8E-06 53.0 4.5 34 6-40 313-346 (714)
457 PRK12550 shikimate 5-dehydroge 90.9 0.41 8.8E-06 45.0 5.2 35 6-40 122-156 (272)
458 PRK12810 gltD glutamate syntha 90.8 0.35 7.6E-06 49.7 5.1 40 403-444 428-467 (471)
459 PRK08223 hypothetical protein; 90.7 0.39 8.5E-06 45.1 4.8 35 5-39 26-60 (287)
460 TIGR00561 pntA NAD(P) transhyd 90.6 0.32 6.9E-06 49.7 4.5 34 5-39 163-196 (511)
461 TIGR02853 spore_dpaA dipicolin 90.6 0.38 8.2E-06 45.7 4.7 35 5-40 150-184 (287)
462 PRK01390 murD UDP-N-acetylmura 90.5 0.33 7.1E-06 49.7 4.6 34 5-39 8-41 (460)
463 PF02254 TrkA_N: TrkA-N domain 90.4 0.51 1.1E-05 37.8 4.8 31 9-40 1-31 (116)
464 PF00670 AdoHcyase_NAD: S-aden 90.4 0.33 7.1E-06 41.3 3.7 35 5-40 22-56 (162)
465 TIGR01318 gltD_gamma_fam gluta 90.3 0.41 8.8E-06 49.1 5.0 35 6-40 282-316 (467)
466 PRK12779 putative bifunctional 90.3 0.38 8.2E-06 53.6 5.1 34 6-40 447-480 (944)
467 TIGR02441 fa_ox_alpha_mit fatt 90.2 0.29 6.2E-06 53.0 4.0 33 7-40 336-368 (737)
468 PRK00258 aroE shikimate 5-dehy 90.2 0.49 1.1E-05 44.8 5.2 35 5-39 122-156 (278)
469 COG0281 SfcA Malic enzyme [Ene 90.2 0.44 9.5E-06 46.6 4.7 35 5-39 198-234 (432)
470 PRK14620 NAD(P)H-dependent gly 90.2 0.38 8.2E-06 46.8 4.5 31 8-39 2-32 (326)
471 TIGR00936 ahcY adenosylhomocys 90.1 0.42 9.1E-06 47.5 4.7 35 5-40 194-228 (406)
472 cd00755 YgdL_like Family of ac 90.1 0.49 1.1E-05 43.3 4.8 35 5-39 10-44 (231)
473 cd05293 LDH_1 A subgroup of L- 90.0 0.52 1.1E-05 45.3 5.2 36 5-40 2-38 (312)
474 KOG1335 Dihydrolipoamide dehyd 89.9 0.18 3.8E-06 48.5 1.8 38 6-44 211-248 (506)
475 PLN02172 flavin-containing mon 89.9 0.36 7.7E-06 49.3 4.2 34 5-39 203-236 (461)
476 PRK07417 arogenate dehydrogena 89.8 0.4 8.6E-06 45.4 4.2 31 8-39 2-32 (279)
477 PRK00683 murD UDP-N-acetylmura 89.8 0.42 9.1E-06 48.2 4.6 34 6-40 3-36 (418)
478 PRK12749 quinate/shikimate deh 89.8 0.54 1.2E-05 44.6 5.0 35 5-39 123-157 (288)
479 COG0169 AroE Shikimate 5-dehyd 89.8 0.55 1.2E-05 44.2 5.0 34 6-39 126-159 (283)
480 cd05291 HicDH_like L-2-hydroxy 89.8 0.47 1E-05 45.6 4.7 33 8-40 2-35 (306)
481 TIGR02440 FadJ fatty oxidation 89.7 0.41 8.9E-06 51.6 4.6 34 6-40 304-338 (699)
482 PRK06223 malate dehydrogenase; 89.7 0.5 1.1E-05 45.5 4.9 35 6-40 2-36 (307)
483 PRK15057 UDP-glucose 6-dehydro 89.7 0.36 7.8E-06 48.0 3.9 31 8-40 2-32 (388)
484 TIGR00507 aroE shikimate 5-deh 89.6 0.51 1.1E-05 44.5 4.7 33 6-39 117-149 (270)
485 PTZ00117 malate dehydrogenase; 89.5 0.58 1.2E-05 45.3 5.1 36 5-40 4-39 (319)
486 PLN02353 probable UDP-glucose 89.3 0.46 1E-05 48.4 4.4 32 8-40 3-36 (473)
487 PRK05600 thiamine biosynthesis 89.2 0.6 1.3E-05 46.0 5.1 35 5-39 40-74 (370)
488 PRK11154 fadJ multifunctional 89.1 0.44 9.6E-06 51.4 4.4 34 6-40 309-343 (708)
489 PRK03803 murD UDP-N-acetylmura 89.1 0.48 1E-05 48.3 4.5 34 6-40 6-39 (448)
490 PF07991 IlvN: Acetohydroxy ac 89.0 0.83 1.8E-05 38.7 5.0 34 5-39 3-36 (165)
491 cd01491 Ube1_repeat1 Ubiquitin 88.9 0.37 8.1E-06 45.4 3.2 35 5-39 18-52 (286)
492 cd05213 NAD_bind_Glutamyl_tRNA 88.9 0.59 1.3E-05 45.0 4.7 35 5-39 177-211 (311)
493 COG1252 Ndh NADH dehydrogenase 88.8 0.3 6.5E-06 48.3 2.6 39 211-253 222-261 (405)
494 PRK11199 tyrA bifunctional cho 88.8 0.58 1.3E-05 46.3 4.7 35 4-39 96-131 (374)
495 PRK07454 short chain dehydroge 88.8 0.74 1.6E-05 42.3 5.2 39 1-40 1-40 (241)
496 PRK05476 S-adenosyl-L-homocyst 88.8 0.6 1.3E-05 46.7 4.7 35 5-40 211-245 (425)
497 PRK04663 murD UDP-N-acetylmura 88.8 0.66 1.4E-05 47.2 5.2 39 1-40 1-42 (438)
498 cd01078 NAD_bind_H4MPT_DH NADP 88.6 0.7 1.5E-05 41.0 4.7 34 5-39 27-61 (194)
499 PF00056 Ldh_1_N: lactate/mala 88.6 0.82 1.8E-05 38.3 4.8 33 8-40 2-36 (141)
500 PRK07774 short chain dehydroge 88.6 0.76 1.6E-05 42.5 5.1 38 1-39 1-39 (250)
No 1
>PLN02676 polyamine oxidase
Probab=100.00 E-value=5.1e-57 Score=456.92 Aligned_cols=444 Identities=61% Similarity=1.033 Sum_probs=335.6
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
|..+.++||+|||||++||+||++|+++|.++|+|||+++++|||+.+.+.+|..+|.|++|++.+++...+++++++++
T Consensus 21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~ 100 (487)
T PLN02676 21 MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANK 100 (487)
T ss_pred hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHh
Confidence 55667889999999999999999999999734999999999999999999999999999999986444467889999999
Q ss_pred cCCccccccCCCcceEEEcCCCcccChhHHHHHHH---HHHH---HHHHHh--ccccccchhHHHHHHhhhcCCCCCCCh
Q 010995 81 SGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYK---KAVE---SAIANL--KNLEATNSNIGEVIKAATELPSSPKTP 152 (496)
Q Consensus 81 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (496)
+|+.....++......++..+|+.++......... ...+ ...... ...++.+......+.. ......
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-----~~~~~~ 175 (487)
T PLN02676 101 LKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQRLFG-----QVPKTP 175 (487)
T ss_pred cCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHh-----hCCCCH
Confidence 99987764444333446667888776433222111 1111 111110 0111111111122221 111122
Q ss_pred HHHHHHHHHhhcccccc-CCc--------ccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEE
Q 010995 153 LELAIDFILHDFEMAEV-EPI--------STYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRE 223 (496)
Q Consensus 153 ~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~ 223 (496)
.....+++....+.... ... ..+..+++..+++..++|+++|++.|++.+..+..|.+.+.+|++|++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~ 255 (487)
T PLN02676 176 LEMVIDYYNYDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVRE 255 (487)
T ss_pred HHHHHHHHhccceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeE
Confidence 33333333322211110 001 122234444555555689999999999987542111122468999999999
Q ss_pred EEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceE
Q 010995 224 LQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFF 303 (496)
Q Consensus 224 I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~ 303 (496)
|..++++|+|++.+|++++||+||+|+|+.+|++..|.|.|+||+.+++++++++++.+.||++.|+++||+++....++
T Consensus 256 I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~ 335 (487)
T PLN02676 256 ISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFF 335 (487)
T ss_pred EEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceee
Confidence 99999999999999989999999999999999876689999999999999999999999999999999999875444555
Q ss_pred EeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCC
Q 010995 304 IYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQR 383 (496)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~ 383 (496)
.+.+...+++.+|..++...++.+++++++.++.+..+..++++++++.++++|+++||..+++|..+..++|.++||++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~ 415 (487)
T PLN02676 336 LYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFK 415 (487)
T ss_pred eeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCC
Confidence 55544444456665554445666788888888888889999999999999999999998777889999999999999999
Q ss_pred cccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhccccccc
Q 010995 384 GSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNN 449 (496)
Q Consensus 384 g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~~~~ 449 (496)
|+|+.++||......+.+++|++||||||++++..++||||||+.||++||++|++.+...+++++
T Consensus 416 Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~~~~~~ 481 (487)
T PLN02676 416 GSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKKKCRKN 481 (487)
T ss_pred cccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhccCccccc
Confidence 999999999987788899999999999999999888999999999999999999999999888766
No 2
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=9.2e-51 Score=411.30 Aligned_cols=413 Identities=29% Similarity=0.493 Sum_probs=291.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC 86 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~ 86 (496)
.+|+|||||+|||+||+.|.++|+ +|+||||++|+|||++|.+..|+.+|+|++|+++. ..++++.+|++++|++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~-~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~--~~~~~~~~l~~~lgl~~~ 77 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF-KVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGV--CNENPLAPLIGRLGLPLY 77 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCceeeecCcCCcccCCCCeeEecc--CCCchHHHHHHHhCCceE
Confidence 479999999999999999999999 79999999999999999888889999999999861 135678999999999754
Q ss_pred cccCCC--------cceEEEcCCCcccChhHHHHHHH---HHHHHHHHHhccccccchhHHHHHHhhhcC-CC-CCCChH
Q 010995 87 FSDYTN--------ARYNIYDRSGKIIPSGVAADSYK---KAVESAIANLKNLEATNSNIGEVIKAATEL-PS-SPKTPL 153 (496)
Q Consensus 87 ~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 153 (496)
...... ..+.++..++..+|......... .+.+..... ........++.+++...... +. ......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 156 (435)
T PLN02268 78 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKV-RDEHEEDMSLLQAISIVLERHPELRLEGLA 156 (435)
T ss_pred eccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhccCCCcCHHHHHHHHhhhCcccccchHH
Confidence 422111 01112223333444433322211 111111111 00111223445554432110 00 011122
Q ss_pred HHHHHHHHhhcc---ccccCCccc--cc---ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEE
Q 010995 154 ELAIDFILHDFE---MAEVEPIST--YV---DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQ 225 (496)
Q Consensus 154 ~~~~~~~~~~~~---~~~~~~~~~--~~---~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~ 225 (496)
+..++++..... ..+.+.++. +. .+.+... ...+|++.++++|++. .+|++|++|++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~--~~~~G~~~l~~~l~~~-----------~~i~~~~~V~~i~ 223 (435)
T PLN02268 157 HEVLQWYLCRMEGWFAADADTISLKSWDQEELLEGGHG--LMVRGYDPVINTLAKG-----------LDIRLNHRVTKIV 223 (435)
T ss_pred HHHHHHHHHHHHHHhCCChHhCchhhcCCccccCCCce--eecCCHHHHHHHHhcc-----------CceeCCCeeEEEE
Confidence 233333321111 000001110 00 0111111 2467999999998664 4699999999999
Q ss_pred EcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEe
Q 010995 226 HSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIY 305 (496)
Q Consensus 226 ~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~ 305 (496)
..+++|+|++.+|+++.||+||+|+|+.++++..+.|.|+||+.+.+++++++++...|+++.|+++||++. .++..
T Consensus 224 ~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~---~~~g~ 300 (435)
T PLN02268 224 RRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV---EFLGV 300 (435)
T ss_pred EcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC---ceeec
Confidence 999999999988888999999999999999875678999999999999999999999999999999999763 22221
Q ss_pred ecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcc
Q 010995 306 AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGS 385 (496)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~ 385 (496)
..+.......+.... ..++..++++++.+..+..+..++++++++.++++|.++|+. ...|..+.+++|.++||+.|+
T Consensus 301 ~~~~~~~~~~~~~~~-~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~-~~~p~~~~~~~W~~dp~~~G~ 378 (435)
T PLN02268 301 VAPTSYGCSYFLNLH-KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD-ATEPVQYLVSRWGSDPNSLGC 378 (435)
T ss_pred cCCCCCCceEEEecc-cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC-CCCccEEEecccCCCCCCCcc
Confidence 111111111222221 224667888888888888899999999999999999999963 457889999999999999999
Q ss_pred cCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010995 386 YSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKI 441 (496)
Q Consensus 386 ~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l 441 (496)
|+++.||......+.+++|++|||||||+++..++|+||||+.||++||++|++.+
T Consensus 379 ~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 379 YSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 99999998777888999999999999999999889999999999999999998764
No 3
>PLN02568 polyamine oxidase
Probab=100.00 E-value=4e-50 Score=408.94 Aligned_cols=424 Identities=22% Similarity=0.426 Sum_probs=302.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-----CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENG-----IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G-----~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~ 79 (496)
+++||+|||||+|||+||++|++.| + +|+|||+++++|||++|.+..|+.+|.|+++++++ ..+++++|++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~-~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~---~~~~~~~l~~ 79 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMF-ELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGI---GGSPVYKIAQ 79 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCc-eEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCC---CCCHHHHHHH
Confidence 4689999999999999999999988 8 69999999999999999999999999999999983 4688999999
Q ss_pred hcCCccccccCCC-----cceEEEcCCCcccChhHHH---HHHHHHHHHHHHHh-----------ccc----c-c----c
Q 010995 80 KSGLRTCFSDYTN-----ARYNIYDRSGKIIPSGVAA---DSYKKAVESAIANL-----------KNL----E-A----T 131 (496)
Q Consensus 80 ~lgl~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~-----------~~~----~-~----~ 131 (496)
++|+.....++.. ....++..+|..++..... ..+..+++...... ..+ . . .
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (539)
T PLN02568 80 EAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGG 159 (539)
T ss_pred HhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccCC
Confidence 9999654322211 1234566778777644433 23333332221100 000 0 0 0
Q ss_pred chhHHHHHHh----hhcCCCC-------CCChHHHHHHHHHh---hccc--cccCC---ccc-----ccccCCcceeeeC
Q 010995 132 NSNIGEVIKA----ATELPSS-------PKTPLELAIDFILH---DFEM--AEVEP---IST-----YVDFGEREFLVAD 187 (496)
Q Consensus 132 ~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~~---~~~~--~~~~~---~~~-----~~~~~~~~~~~~~ 187 (496)
..++.+++.. ....... ..++.+.+...... .++. ..... ++. +..+.+. ....
T Consensus 160 ~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~--~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGE--EITI 237 (539)
T ss_pred CCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCC--eEEE
Confidence 0123333322 1100000 11222222222111 1110 11111 111 1111222 3456
Q ss_pred cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCC----cccC
Q 010995 188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDL----ISFK 263 (496)
Q Consensus 188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~l----i~~~ 263 (496)
++|++.|+++|++.+. +.+|++|++|++|+.++++|+|++.+|+++.||+||+|+|+.+|++.+ +.|.
T Consensus 238 ~gG~~~Li~~La~~L~--------~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~ 309 (539)
T PLN02568 238 AKGYLSVIEALASVLP--------PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS 309 (539)
T ss_pred CCcHHHHHHHHHhhCC--------CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence 8999999999999863 457999999999999999999999999889999999999999998632 4799
Q ss_pred CCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCC---Cce--EEeecCCC----Ccccccee----ccccCCCCcEEE
Q 010995 264 PPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG---KEF--FIYAHERR----GYYTFWQH----MENAYPGSNILV 330 (496)
Q Consensus 264 p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~---~~~--~~~~~~~~----~~~~~~~~----~~~~~~~~~vl~ 330 (496)
|+||..+++++++++++.+.||++.|+++||....+ ..+ +++..++. .....|.. +.....+.++|+
T Consensus 310 P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~ 389 (539)
T PLN02568 310 PPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLL 389 (539)
T ss_pred CCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEE
Confidence 999999999999999999999999999999864111 111 12221110 01112221 111223678999
Q ss_pred EEeccccchhcccCCcHHHHHHHHHHHHHhcCCCC----------------------CCCCeeEecccCCCCCCCcccCC
Q 010995 331 VTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDI----------------------PNATDILVPRWWNNRFQRGSYSN 388 (496)
Q Consensus 331 ~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~----------------------~~~~~~~~~rw~~~~~~~g~~~~ 388 (496)
+++.++.|..++.++++++++.+++.|+++||... +.|..+.+++|.++||++|+|++
T Consensus 390 ~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~ 469 (539)
T PLN02568 390 SWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSY 469 (539)
T ss_pred EEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCC
Confidence 99999999999999999999999999999997432 35788999999999999999999
Q ss_pred CCCCCChHHHHHHhCCCC-------------cEEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995 389 YPIISDNQLVNSIRAPVA-------------GIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442 (496)
Q Consensus 389 ~~~g~~~~~~~~~~~p~~-------------~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~ 442 (496)
.+||.....+..+++|++ +|||||++|+..|+++||||++||++||++|++.++
T Consensus 470 ~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 470 VAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 999998778889999985 799999999999999999999999999999998764
No 4
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.7e-51 Score=387.45 Aligned_cols=438 Identities=29% Similarity=0.493 Sum_probs=311.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC-
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG- 82 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg- 82 (496)
...++|||||||+|||+||.+|.++|..+|+|||+++|+|||++|..+.+..+|+|++|+++ ...++++++++++|
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG---~~gNpVY~la~~~g~ 95 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG---EEGNPVYELAKEYGD 95 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC---CCCChHHHHHHHhCc
Confidence 35678999999999999999999988779999999999999999999998899999999998 57899999999887
Q ss_pred Cccccc-cCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhc-cccccchhHHHHHHh----hhcCCCCC---CChH
Q 010995 83 LRTCFS-DYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLK-NLEATNSNIGEVIKA----ATELPSSP---KTPL 153 (496)
Q Consensus 83 l~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~---~~~~ 153 (496)
+..... ............+|..++.........-.......... .......++..++.. .+..+..+ +...
T Consensus 96 ~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~~~~~~SvG~~ln~~~~~~~~~~e~~~~~k~l~ 175 (498)
T KOG0685|consen 96 LKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEIAHDEGSVGEYLNSEFWDELRGPENPEIDKTLA 175 (498)
T ss_pred cceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccccCccccHHHHHHHHHHHHhccccccchhhHHH
Confidence 222111 11111123355678877765544332211111100000 000111122222221 11111111 1122
Q ss_pred HHHHHHHHhhcc-cc--------ccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEE
Q 010995 154 ELAIDFILHDFE-MA--------EVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVREL 224 (496)
Q Consensus 154 ~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I 224 (496)
...+..+.+... .. +...+..+...++.....+.+.|+..+++-|.+.+.+...-.-+-.+++++++|.+|
T Consensus 176 ~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I 255 (498)
T KOG0685|consen 176 EEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENI 255 (498)
T ss_pred HHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceee
Confidence 233333332211 11 122233344455544566778899999999988765432000023467777999999
Q ss_pred EEcC-CceEEEeCCCcEEEcCEEEEecChHHHhcCCc-ccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCce
Q 010995 225 QHSR-NGVTVKTEDGCVYEANYVILSASIGVLQSDLI-SFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEF 302 (496)
Q Consensus 225 ~~~~-~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li-~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~ 302 (496)
..++ +.|.|++.||+.+.||+||+|++.++|+...- .|.|+||..+.++|+++.++++.|+++.|+++||+.+...-.
T Consensus 256 ~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~ 335 (498)
T KOG0685|consen 256 NWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQ 335 (498)
T ss_pred ccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeE
Confidence 9876 66999999999999999999999999997322 489999999999999999999999999999999988432223
Q ss_pred EEeecCC----CCccccce----eccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcC-CCCCCCCeeEe
Q 010995 303 FIYAHER----RGYYTFWQ----HMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIPNATDILV 373 (496)
Q Consensus 303 ~~~~~~~----~~~~~~~~----~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~-~~~~~~~~~~~ 373 (496)
+.+.+++ +.....|. .+......+.+|.+++.|..+..++.++|||+.+.++..|+++++ +.+|+|..+..
T Consensus 336 ~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilR 415 (498)
T KOG0685|consen 336 LLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILR 415 (498)
T ss_pred EEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhh
Confidence 3444433 11111232 123333455899999999999999999999999999999999998 88999999999
Q ss_pred cccCCCCCCCcccCCCCCCCChHHHHHHhCCC--------CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995 374 PRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV--------AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKD 444 (496)
Q Consensus 374 ~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~--------~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~ 444 (496)
++|.++||.+|+|++.++|+.......+..|+ +.|.|||++|+..++++++||++||.|.|+++++.+...
T Consensus 416 s~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~ 494 (498)
T KOG0685|consen 416 SQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESS 494 (498)
T ss_pred hcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhh
Confidence 99999999999999999987654444444443 479999999999899999999999999999999977644
No 5
>PLN03000 amine oxidase
Probab=100.00 E-value=1.8e-50 Score=418.36 Aligned_cols=417 Identities=23% Similarity=0.467 Sum_probs=302.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC----CcEEeecceEEecCCCCCCChHHHHHHh
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG----GVSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~----g~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
...+|+|||||++||+||+.|++.|+ +|+|+|+++++|||++|.+.. +..+|+|++|+++ ...+++..|+++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g---~~~npl~~L~~q 258 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTG---TLGNPLGIIARQ 258 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCC-cEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeC---CCccHHHHHHHH
Confidence 46899999999999999999999999 699999999999999998865 4679999999998 355677888999
Q ss_pred cCCccccccCCCcceEEEcCCCcccChhHH---HHHHHHHHHHHHH---HhccccccchhHHHHHHhhhcCCCCCC-ChH
Q 010995 81 SGLRTCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKAVESAIA---NLKNLEATNSNIGEVIKAATELPSSPK-TPL 153 (496)
Q Consensus 81 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 153 (496)
+|++..... . ...+|..+|+.++.... ...+....+.... ..... ....++.+.+..+........ ...
T Consensus 259 lgl~l~~~~--~-~~~ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~-~~D~SLg~aLe~~~~~~g~~~t~e~ 334 (881)
T PLN03000 259 LGSSLYKVR--D-KCPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDV-SMDVSLGAALETFRQVSGNDVATEE 334 (881)
T ss_pred cCCceeecC--C-CCeEEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhccc-CcCCcHHHHHHHHHHHHcccCCHHH
Confidence 999754321 1 23466778888764322 1223333322211 11111 111111221111000000011 111
Q ss_pred HHHHHHHHhhccccccCCc---c-ccc------ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEE
Q 010995 154 ELAIDFILHDFEMAEVEPI---S-TYV------DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRE 223 (496)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~---~-~~~------~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~ 223 (496)
...+.|....++......+ + .++ .+++.. ...++|++.|+++|++.+ .|++|++|++
T Consensus 335 ~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~--~~v~GG~~~LieaLa~~L-----------~I~Ln~~Vt~ 401 (881)
T PLN03000 335 MGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDH--CFLPGGNGRLVQALAENV-----------PILYEKTVQT 401 (881)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCce--EEeCCCHHHHHHHHHhhC-----------CcccCCcEEE
Confidence 1222333333332211111 1 000 112222 345799999999999883 3999999999
Q ss_pred EEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCC-Cce
Q 010995 224 LQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG-KEF 302 (496)
Q Consensus 224 I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~-~~~ 302 (496)
|++.+++|+|++.+ +++.||+||+|+|+.++++..|.|.|+||+.+.++|++++++.+.||++.|+++||..... +++
T Consensus 402 I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~ 480 (881)
T PLN03000 402 IRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGH 480 (881)
T ss_pred EEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeE
Confidence 99999999998765 4899999999999999996558999999999999999999999999999999999987422 223
Q ss_pred EEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC---CCCCCCeeEecccCCC
Q 010995 303 FIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWNN 379 (496)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~---~~~~~~~~~~~rw~~~ 379 (496)
+.......+.+..|.++. ...+..+|++++.++.+..++.++++++++.++++|+++|+. ..++|..+.+++|.++
T Consensus 481 l~~~~~~rg~~~~f~s~s-p~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~D 559 (881)
T PLN03000 481 LTEDPNYRGEFFLFYSYA-PVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGD 559 (881)
T ss_pred EecCCCCCceeEEEeCCC-CCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCC
Confidence 221112223222332221 113567888999999999999999999999999999999973 4568899999999999
Q ss_pred CCCCcccCCCCCCCChHHHHHHhCCC--CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995 380 RFQRGSYSNYPIISDNQLVNSIRAPV--AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKD 444 (496)
Q Consensus 380 ~~~~g~~~~~~~g~~~~~~~~~~~p~--~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~ 444 (496)
||++|+|+++.||+....+..+.+|+ ++||||||+++..|+||||||++||++||++|++.+...
T Consensus 560 PysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~ 626 (881)
T PLN03000 560 PFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKAR 626 (881)
T ss_pred CCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999878889999996 689999999998899999999999999999999988743
No 6
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.9e-49 Score=410.59 Aligned_cols=417 Identities=24% Similarity=0.454 Sum_probs=304.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--C--cEEeecceEEecCCCCCCChHHHHHHh
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--G--VSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--g--~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
..++|+|||||++||+||..|+++|+ +|+|||+++++|||++|.+.+ | ..+|+|++|+++ ...+++..++++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g---~~~npl~~la~~ 234 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITG---IHANPLGVLARQ 234 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCccCcCceeeecccCCCCceEEecCCeeccc---cccchHHHHHHH
Confidence 46799999999999999999999999 699999999999999998875 3 379999999998 345668899999
Q ss_pred cCCccccccCCCcceEEEcCCCcccChhHH---HHHHHHHHHHHHHHhccc--cccchhHHHHHHhhhcCCCC-CCChHH
Q 010995 81 SGLRTCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKAVESAIANLKNL--EATNSNIGEVIKAATELPSS-PKTPLE 154 (496)
Q Consensus 81 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~ 154 (496)
+|++.... .....++..+|..++.... ...+...++......... .....++.++++........ ......
T Consensus 235 lgl~~~~~---~~~~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~ 311 (738)
T PLN02529 235 LSIPLHKV---RDNCPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEER 311 (738)
T ss_pred hCCCcccc---CCCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhccCCCHHHH
Confidence 99876543 2234577788887763322 223333333322211111 11223455555432111111 111223
Q ss_pred HHHHHHHhhccccccCC---ccc--c-----cccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEE
Q 010995 155 LAIDFILHDFEMAEVEP---IST--Y-----VDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVREL 224 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~~~---~~~--~-----~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I 224 (496)
..++|....++...... ++. + ..+++. ...+.+|++.|+++|++. . .|++|++|++|
T Consensus 312 ~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~--~~~i~GG~~~Li~aLA~~---------L--~IrLnt~V~~I 378 (738)
T PLN02529 312 QLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGD--HCFLAGGNWRLINALCEG---------V--PIFYGKTVDTI 378 (738)
T ss_pred HHHHHHHHHhceecCCChHHhhhhHhhhccccccCCc--eEEECCcHHHHHHHHHhc---------C--CEEcCCceeEE
Confidence 34455443333222111 111 0 011222 234579999999999876 2 49999999999
Q ss_pred EEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCC-CCceE
Q 010995 225 QHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSP-GKEFF 303 (496)
Q Consensus 225 ~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~-~~~~~ 303 (496)
.+++++|+|++. ++++.||+||+|+|++++++..+.|.|+||+.+.+++++++++++.||++.|+++||.... .++++
T Consensus 379 ~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l 457 (738)
T PLN02529 379 KYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCL 457 (738)
T ss_pred EEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEE
Confidence 999999999874 4589999999999999999655889999999999999999999999999999999997632 12222
Q ss_pred EeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC---CCCCCCeeEecccCCCC
Q 010995 304 IYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWNNR 380 (496)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~---~~~~~~~~~~~rw~~~~ 380 (496)
.......+.+..|.... ..++.++|++++.++.+..+..++++++++.++++|+++|+. ..++|..+.+++|.++|
T Consensus 458 ~~~~~~~g~~~~~~~~~-~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP 536 (738)
T PLN02529 458 NESSNKRGEFFLFYGYH-TVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDP 536 (738)
T ss_pred eccCCCCceEEEEecCC-CCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCC
Confidence 21122223222232221 224567888888888888899999999999999999999973 34678899999999999
Q ss_pred CCCcccCCCCCCCChHHHHHHhCCC-CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhc
Q 010995 381 FQRGSYSNYPIISDNQLVNSIRAPV-AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443 (496)
Q Consensus 381 ~~~g~~~~~~~g~~~~~~~~~~~p~-~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~ 443 (496)
|++|+|++..|+.....+..+.+|+ ++||||||+++..|+|+||||++||++||++|++.++.
T Consensus 537 ~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 537 LSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred CCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988887655567778885 89999999999989999999999999999999998864
No 7
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=3.3e-49 Score=410.04 Aligned_cols=420 Identities=23% Similarity=0.462 Sum_probs=305.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCc----EEeecceEEecCCCCCCChHHHHHHh
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGV----SVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~----~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
...+|+|||||++||+||+.|++.|+ +|+|+|+++++|||+.+....|. .+|+|++|+++. ..+++..++++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~---~~npl~~l~~~ 312 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGI---NGNPLGVLARQ 312 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeccccCCCcccccccCCCCcceeccCCceeecCC---CccHHHHHHHH
Confidence 46789999999999999999999999 69999999999999999887653 689999999982 45678899999
Q ss_pred cCCccccccCCCcceEEEcCCCcccChhHH---HHHHHHHHHHHHHHhc----cccccchhHHHHHHhhhcCCCCCCChH
Q 010995 81 SGLRTCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKAVESAIANLK----NLEATNSNIGEVIKAATELPSSPKTPL 153 (496)
Q Consensus 81 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (496)
+|++..... ..+.++..+|..++.... ...+..+++...+... .......++.+++..+........++.
T Consensus 313 lgl~~~~~~---~~~~~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~~~~~~~ 389 (808)
T PLN02328 313 LGLPLHKVR---DICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQ 389 (808)
T ss_pred cCCceEecC---CCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhccCCCHH
Confidence 999755422 224466788887653322 2333333333211111 111122334444432111111122222
Q ss_pred H-HHHHHHHhhccccccC---Ccc-ccc------ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeE
Q 010995 154 E-LAIDFILHDFEMAEVE---PIS-TYV------DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR 222 (496)
Q Consensus 154 ~-~~~~~~~~~~~~~~~~---~~~-~~~------~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~ 222 (496)
+ ..++|....++..... .++ ..+ .+++. ....++|++.|+++|++. .+ |++|++|+
T Consensus 390 e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~--~~~v~GG~~~Li~aLa~~---------L~--I~ln~~V~ 456 (808)
T PLN02328 390 ERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGD--HCFIPGGNDTFVRELAKD---------LP--IFYERTVE 456 (808)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCe--EEEECCcHHHHHHHHHhh---------CC--cccCCeeE
Confidence 2 3344444333322111 111 000 11122 334579999999999988 33 99999999
Q ss_pred EEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCC-Cc
Q 010995 223 ELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG-KE 301 (496)
Q Consensus 223 ~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~-~~ 301 (496)
+|.+.+++|.|. .+|+++.||+||+|+|++++++..|.|.|+||+.+.++|++++|+.+.||++.|+++||..... ++
T Consensus 457 ~I~~~~dgV~V~-~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG 535 (808)
T PLN02328 457 SIRYGVDGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFG 535 (808)
T ss_pred EEEEcCCeEEEE-eCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceE
Confidence 999999888884 4677899999999999999996558899999999999999999999999999999999986322 22
Q ss_pred eEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC---CCCCCCeeEecccCC
Q 010995 302 FFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWN 378 (496)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~---~~~~~~~~~~~rw~~ 378 (496)
++.......+.+..|.++. ...+..+|++++.++.+..+..++++++++.++++|+++|+. ..++|..+.+++|.+
T Consensus 536 ~l~~d~s~rG~~~lf~s~s-~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~ 614 (808)
T PLN02328 536 HLTEDPSMRGEFFLFYSYS-SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGK 614 (808)
T ss_pred EEeecCCCCceEEEEecCC-CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCC
Confidence 2221112223222233222 124567889999898899999999999999999999999974 246789999999999
Q ss_pred CCCCCcccCCCCCCCChHHHHHHhCCC--CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995 379 NRFQRGSYSNYPIISDNQLVNSIRAPV--AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446 (496)
Q Consensus 379 ~~~~~g~~~~~~~g~~~~~~~~~~~p~--~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~ 446 (496)
+||++|+|+++.||+.....+.+.+|+ ++||||||+++..++||||||+.||++||++|++.+.....
T Consensus 615 DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~ 684 (808)
T PLN02328 615 DCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSL 684 (808)
T ss_pred CCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999998766788888986 69999999999888999999999999999999999876533
No 8
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-48 Score=368.10 Aligned_cols=418 Identities=22% Similarity=0.333 Sum_probs=290.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995 3 STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG 82 (496)
Q Consensus 3 ~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg 82 (496)
.++.+||||||||+|||+||+.|.++|+ +|+|||+++|+|||+.+.+..+...|.|++++.+ .++.+..+++++|
T Consensus 4 p~~~~~viivGaGlaGL~AA~eL~kaG~-~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p----~~~~~l~~~k~~g 78 (450)
T COG1231 4 PPKTADVIIVGAGLAGLSAAYELKKAGY-QVQILEARDRVGGRSLTARAGGEYTDLGGQYINP----THDALLAYAKEFG 78 (450)
T ss_pred CCCCCcEEEECCchHHHHHHHHHhhcCc-EEEEEeccCCcCceeEEEeccceeeccCCcccCc----cchhhhhhHHhcC
Confidence 4678999999999999999999999999 6999999999999999998889999999999998 8999999999999
Q ss_pred CccccccCCCcceEEE--cCCCcccChhHHHHHHHHHHHHHHHHh---ccccc---------cchhHHHH----HHhhhc
Q 010995 83 LRTCFSDYTNARYNIY--DRSGKIIPSGVAADSYKKAVESAIANL---KNLEA---------TNSNIGEV----IKAATE 144 (496)
Q Consensus 83 l~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~----~~~~~~ 144 (496)
++.............+ .......-................... ..+.. ....+..| ...+..
T Consensus 79 v~~~~fi~~g~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W~~~~~~~~~~ 158 (450)
T COG1231 79 VPLEPFIRDGDNVIGYVGSSKSTPKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAWKTSSLRGLSR 158 (450)
T ss_pred CCCCceeccCcccccccccccccchhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhhhhcccccccc
Confidence 9866522211101011 011110000000000000000000000 00000 00012222 000000
Q ss_pred -----CCCCCCChHHHH--HHHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceee
Q 010995 145 -----LPSSPKTPLELA--IDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKL 217 (496)
Q Consensus 145 -----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~ 217 (496)
....+....+.+ .+.+. .. ..........+....-.....|||+.|.++++++ +|.+|++
T Consensus 159 ~~~a~~~~g~~~~~~~~~~~d~~~--~~--~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~q---------l~~~I~~ 225 (450)
T COG1231 159 DPGARVSPGPIEPGDVSLLHDALP--LR--SASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQ---------LGTRILL 225 (450)
T ss_pred CccceeccCCCCcccccchhhhhh--hh--hhhhccccccccccchhhccCccHHHHHHHHHHH---------hhceEEe
Confidence 000000000000 00000 00 0000000111111111222239999999999999 5779999
Q ss_pred CceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCC
Q 010995 218 NKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS 297 (496)
Q Consensus 218 ~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~ 297 (496)
+++|.+|.+.+++|+|++.+..++.+|+||+|+|+.++.+ |.|.|.+++.++++++.++|++.+|+.+.|++|||++.
T Consensus 226 ~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~ 303 (450)
T COG1231 226 NEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEA 303 (450)
T ss_pred cCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhc
Confidence 9999999999999999998855999999999999999998 89999999999999999999999999999999999984
Q ss_pred CCCceEEeecCCCCccccceeccccCCCCcEEEEEec-cccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCee-Eecc
Q 010995 298 PGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLT-NGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDI-LVPR 375 (496)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~-~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~-~~~r 375 (496)
...+...+.+.. .....+.+. ....+..||+.+|. ++.+..|..+++++.++.++..|.++||....++.+. ...+
T Consensus 304 ~~l~G~~~tD~~-~~~i~~~s~-~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~ 381 (450)
T COG1231 304 GILGGESLTDLG-LGFISYPSA-PFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVD 381 (450)
T ss_pred ccCCceEeecCC-cceEecCcc-ccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceeee
Confidence 212333444332 111122221 22356788888665 8889999999999999999999999999666666666 8999
Q ss_pred cCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995 376 WWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442 (496)
Q Consensus 376 w~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~ 442 (496)
|.++|++.|++..+.||+..++.+.+..|.++|||||..+++.++||+|||++||.+||.+|...+.
T Consensus 382 W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 382 WSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred cccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999998889999999999999999999999999444445899999999999999999988764
No 9
>PLN02976 amine oxidase
Probab=100.00 E-value=8.7e-47 Score=399.41 Aligned_cols=422 Identities=25% Similarity=0.494 Sum_probs=300.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee-CCcEEeecceEEecCCC-----CCCChHHHHH
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF-GGVSVELGAGWIAGVGG-----KESNPVWELA 78 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~-~g~~~d~G~~~~~~~~~-----~~~~~~~~l~ 78 (496)
..++|+|||||++||+||+.|++.|+ +|+|||+++++||++++.+. .++.+|+|++++++... ...+++..++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~-~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la 770 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGF-SVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLIC 770 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCC-cEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHH
Confidence 45799999999999999999999999 79999999999999999774 58899999999987311 0124445578
Q ss_pred HhcCCccccccCCCcceEEEcCCCcccChhHHHH---HHHHHHHHHHHHhcc--ccccchhHHHHHHhhhc-----CCC-
Q 010995 79 SKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAAD---SYKKAVESAIANLKN--LEATNSNIGEVIKAATE-----LPS- 147 (496)
Q Consensus 79 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~- 147 (496)
+++|+.......... .+...+|..++...... .+..+++........ ......++.+++...+. ...
T Consensus 771 ~qlGl~l~~~~~~~~--~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~~~~~~~~ 848 (1713)
T PLN02976 771 AQLGLELTVLNSDCP--LYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPRPGV 848 (1713)
T ss_pred HhcCCccccccCCCc--eeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhhhcccccc
Confidence 899998654332221 12236788777554432 333333332211111 11111222222221000 000
Q ss_pred ---------------C------C-CCh------------HHHHHHHHHhhcccc---ccCCcc--------cccccCCcc
Q 010995 148 ---------------S------P-KTP------------LELAIDFILHDFEMA---EVEPIS--------TYVDFGERE 182 (496)
Q Consensus 148 ---------------~------~-~~~------------~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~ 182 (496)
. . ... ....+.|.....+.. ....++ .|..+++.
T Consensus 849 ~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fgG~- 927 (1713)
T PLN02976 849 DIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGA- 927 (1713)
T ss_pred ccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCCCc-
Confidence 0 0 000 111222332222110 011111 01112222
Q ss_pred eeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc----------CCceEEEeCCCcEEEcCEEEEecCh
Q 010995 183 FLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS----------RNGVTVKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 183 ~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~----------~~~v~V~~~~G~~~~ad~VI~A~p~ 252 (496)
.+.+++|++.|+++|++.+ .|++|++|++|.+. +++|.|+|.+|+++.||+||+|+|+
T Consensus 928 -~~rIkGGYqqLIeALAe~L-----------~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPL 995 (1713)
T PLN02976 928 -HCMIKGGYSNVVESLAEGL-----------DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPL 995 (1713)
T ss_pred -eEEeCCCHHHHHHHHHhhC-----------CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCH
Confidence 2345899999999999873 39999999999984 3679999999989999999999999
Q ss_pred HHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecC---CCCc-cccceeccccCCCCcE
Q 010995 253 GVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHE---RRGY-YTFWQHMENAYPGSNI 328 (496)
Q Consensus 253 ~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~v 328 (496)
.+|+...+.|.|+||..+.++|+.++++.+.||++.|+++||+... .++....+ ..+. +.+|.. ....+.++
T Consensus 996 GVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~--d~FG~s~edtdlrG~~~~~wnl--r~psG~pV 1071 (1713)
T PLN02976 996 GCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSV--DYFGATAEETDLRGQCFMFWNV--KKTVGAPV 1071 (1713)
T ss_pred HHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCC--CccccccccCCCCceEEEeccC--CCCCCCCE
Confidence 9998655889999999999999999999999999999999998732 22211111 1221 223321 11245679
Q ss_pred EEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCC-CCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCc
Q 010995 329 LVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG 407 (496)
Q Consensus 329 l~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~-~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~ 407 (496)
|++++.|..+..+..++++++++.+++.|.++||.. .++|..+.+++|.++||++|+|++.+||.....+..+.+|+++
T Consensus 1072 LVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVgg 1151 (1713)
T PLN02976 1072 LIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVEN 1151 (1713)
T ss_pred EEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCC
Confidence 999999888888999999999999999999999843 4789999999999999999999999999877788899999976
Q ss_pred -EEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995 408 -IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446 (496)
Q Consensus 408 -l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~ 446 (496)
|||||++++..|+||||||+.||.+||++|+..+..+..
T Consensus 1152 RLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976 1152 CLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGND 1191 (1713)
T ss_pred cEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999999989999999999999999999999976544
No 10
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.6e-47 Score=379.11 Aligned_cols=416 Identities=30% Similarity=0.542 Sum_probs=293.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCc-EEeecceEEecCCCCCCChHHHHHHhcC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGV-SVELGAGWIAGVGGKESNPVWELASKSG 82 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~-~~d~G~~~~~~~~~~~~~~~~~l~~~lg 82 (496)
.++++|||||||+|||+||++|.+.|+ +|+||||++|+|||++|.+..+. .+|+|+++++++ ..+++.-+.+++|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~---~~npl~~l~~qlg 88 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGV---YNNPLALLSKQLG 88 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCCcCceeEEEecCCCCeeecCCceecCc---CccHHHHHHHHhC
Confidence 457899999999999999999999999 69999999999999999986654 599999999992 4458889999999
Q ss_pred CccccccCCCcceEEEcCCCcccC---hhHHHHHHHHHHHHHHHHhc-------cccccch--------hHHHHHHhhhc
Q 010995 83 LRTCFSDYTNARYNIYDRSGKIIP---SGVAADSYKKAVESAIANLK-------NLEATNS--------NIGEVIKAATE 144 (496)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~ 144 (496)
++........ .++...+.... .......+..+......... ....... ...+....
T Consensus 89 l~~~~~~~~~---~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--- 162 (501)
T KOG0029|consen 89 LELYKVRDTC---PLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKT--- 162 (501)
T ss_pred cccceecccc---cccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHh---
Confidence 9876533222 23333332211 11111111222111111110 0000000 01111110
Q ss_pred CCCCC-CChHHHHHHHHHhhcccccc---CCcc-----cccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccce
Q 010995 145 LPSSP-KTPLELAIDFILHDFEMAEV---EPIS-----TYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRL 215 (496)
Q Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i 215 (496)
..+.. .......+.|.....+.... +..+ ....++.........+|+..++..+++. .+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~-----------l~I 231 (501)
T KOG0029|consen 163 LLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEG-----------LDI 231 (501)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCC-----------cce
Confidence 00000 00122233333332221110 0000 0011222211133468899998888764 579
Q ss_pred eeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCC
Q 010995 216 KLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294 (496)
Q Consensus 216 ~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w 294 (496)
+++++|.+|.+.+++ +.+++.++..+.+|+||+|+|+.+++...|.|.|+||..+.++|++++.+...||.+.|++.||
T Consensus 232 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW 311 (501)
T KOG0029|consen 232 HLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFW 311 (501)
T ss_pred eeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccC
Confidence 999999999998766 3445455555999999999999999988899999999999999999999999999999999999
Q ss_pred CCCCCCceEEeecCCCCccc--cceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcC-CCCCCCCee
Q 010995 295 PCSPGKEFFIYAHERRGYYT--FWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIPNATDI 371 (496)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~-~~~~~~~~~ 371 (496)
.. +..++........... .+.++.+ ..+.++++..+.+..+..+..++++++++.++..|+++|+ ...++|.+.
T Consensus 312 ~~--~~d~fg~~~~~~~~~~~~~f~~~~~-~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~ 388 (501)
T KOG0029|consen 312 DQ--DIDFFGIVPETSVLRGLFTFYDCKP-VAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDA 388 (501)
T ss_pred CC--CcCeEEEccccccccchhhhhhcCc-cCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccce
Confidence 74 3455544433222222 1222221 2345588888888888999999999999999999999998 467889999
Q ss_pred EecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCc-EEEccccccCcCCccchHHHHHHHHHHHHHHHHHhc
Q 010995 372 LVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443 (496)
Q Consensus 372 ~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~-l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~ 443 (496)
.+.+|..++++.|+|++..++.....+..+++|+.+ +||||++|+..|+++|+||+.||.++|..|+..+..
T Consensus 389 ~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 389 LVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred eeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999999988877778999999987 999999999999999999999999999999999885
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.2e-40 Score=340.45 Aligned_cols=408 Identities=17% Similarity=0.281 Sum_probs=277.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhc
Q 010995 6 RSPVIIIGAGVSGISAGKILAEN----GIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS 81 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~l 81 (496)
++||+|||||+|||+||++|+++ |+ +|+|||+++++|||++|.+.+|+.+|.|+|+++. .++.++++++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~-~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~----~~~~~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPV-ELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE----RKKSAPDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCC-cEEEEEcCCcCcceEEEEeeCCEEEecCcccccc----CChHHHHHHHHc
Confidence 57999999999999999999999 99 7999999999999999999999999999999998 778899999999
Q ss_pred CCccccccCCCcceEEEcCCCcccC--hhHHHHH------HHHHHHHHHHHh-ccccccchhHHHHHHhhh---------
Q 010995 82 GLRTCFSDYTNARYNIYDRSGKIIP--SGVAADS------YKKAVESAIANL-KNLEATNSNIGEVIKAAT--------- 143 (496)
Q Consensus 82 gl~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------- 143 (496)
|++............++..+|+.++ ....... +...+......+ ........++.+|+....
T Consensus 77 gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g~~~~~~~~ 156 (462)
T TIGR00562 77 GLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFGDEVVENLI 156 (462)
T ss_pred CCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcCHHHHHHHH
Confidence 9976653211111223333366543 2211110 000011111111 111111234444443311
Q ss_pred -cCC--CCCCChHHHHHHHHHhhcccc-----c-------cC--C----cccccccCCcceeeeCcccHHHHHHHHHHhh
Q 010995 144 -ELP--SSPKTPLELAIDFILHDFEMA-----E-------VE--P----ISTYVDFGEREFLVADERGYAHLLYKMAEEF 202 (496)
Q Consensus 144 -~~~--~~~~~~~~~~~~~~~~~~~~~-----~-------~~--~----~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~ 202 (496)
++. ....++.+++..+....+... + .. . ...+.. +....+..+++|++.|+++|++.+
T Consensus 157 ~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gG~~~l~~~l~~~l 235 (462)
T TIGR00562 157 EPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAK-KQGQDFQTLATGLETLPEEIEKRL 235 (462)
T ss_pred HHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccccccc-ccCCceEecchhHHHHHHHHHHHh
Confidence 110 112344555554432211000 0 00 0 001111 111224567899999999999986
Q ss_pred ccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcce
Q 010995 203 LSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVY 282 (496)
Q Consensus 203 ~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~ 282 (496)
. .++|++|++|++|+.++++|+|++.+|++++||+||+|+|++.+.. +.|+++....+++.++++.++
T Consensus 236 ~--------~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~~ 303 (462)
T TIGR00562 236 K--------LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPPV 303 (462)
T ss_pred c--------cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCce
Confidence 2 2689999999999999999999988888899999999999999987 235677778889999999999
Q ss_pred eEEEEEcCCCCCCCC-CCCceEEeecCCCC-ccccceec---cccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHH
Q 010995 283 TKIFLKFPCKFWPCS-PGKEFFIYAHERRG-YYTFWQHM---ENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVL 357 (496)
Q Consensus 283 ~~v~l~~~~~~w~~~-~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L 357 (496)
.+|++.|++++|... .+++++...++... ...+|.+. ...+++..++++++.+..+..+.+++++|+++.++++|
T Consensus 304 ~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L 383 (462)
T TIGR00562 304 ANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDL 383 (462)
T ss_pred EEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHH
Confidence 999999998888653 23333332222111 12223211 11234556777777666667788899999999999999
Q ss_pred HHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHH----HhCCCCcEEEccccccCcCCccchHHHHHHHHH
Q 010995 358 QDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNS----IRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDT 433 (496)
Q Consensus 358 ~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~----~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~a 433 (496)
.++++... +|....++||.. +++.+.+|+. ...+. +..+.++||+||+|+.. .++++|+.||.++
T Consensus 384 ~~~~gi~~-~p~~~~v~rw~~------a~P~~~~g~~-~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~~~i~sg~~~ 452 (462)
T TIGR00562 384 KKVLNINN-EPEMLCVTRWHR------AIPQYHVGHD-QRLKEARELLESAYPGVFLTGNSFEG---VGIPDCIDQGKAA 452 (462)
T ss_pred HHHhCCCC-CCcEEEEeEccc------cCCCCCCChH-HHHHHHHHHHHhhCCCEEEeccccCC---CcHHHHHHHHHHH
Confidence 99998543 488889999976 8998899873 43333 44556799999999864 4899999999999
Q ss_pred HHHHHHHHh
Q 010995 434 GKAVVEKIR 442 (496)
Q Consensus 434 A~~il~~l~ 442 (496)
|++|++.+.
T Consensus 453 a~~~~~~~~ 461 (462)
T TIGR00562 453 ASDVLTFLF 461 (462)
T ss_pred HHHHHHhhc
Confidence 999988763
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=3.1e-40 Score=336.87 Aligned_cols=406 Identities=14% Similarity=0.217 Sum_probs=262.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC------CCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995 6 RSPVIIIGAGVSGISAGKILAEN------GIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~------G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~ 79 (496)
+++|+|||||+|||+||++|+++ |. +|+||||++|+|||++|.+.+|+.+|.|+|+++. .++.+++|++
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~-~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~----~~~~~~~l~~ 75 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDL-NLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA----RNEHVMPLVK 75 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCc-cEEEEecCCCccceEEEEeeCCEEEecCcHHHhc----CCHHHHHHHH
Confidence 35799999999999999999986 37 6999999999999999999999999999999987 7788999999
Q ss_pred hcCCccccccCCCcceEEEcCCCccc--ChhH-------HHHHHH-------HHHHHHHHHhccc--cccchhHHHHHHh
Q 010995 80 KSGLRTCFSDYTNARYNIYDRSGKII--PSGV-------AADSYK-------KAVESAIANLKNL--EATNSNIGEVIKA 141 (496)
Q Consensus 80 ~lgl~~~~~~~~~~~~~~~~~~g~~~--~~~~-------~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~ 141 (496)
+||++............++. +|... |... ....+. ..+.......... .....++.+|+..
T Consensus 76 ~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~ 154 (463)
T PRK12416 76 DLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFLES 154 (463)
T ss_pred HcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHHH
Confidence 99998665322221222332 33322 1110 011110 0111111111110 0112334455443
Q ss_pred hh----------cC--CCCCCChHHHHHHHHHhhc---c--ccccC-Cc---ccccccCCcceeeeCcccHHHHHHHHHH
Q 010995 142 AT----------EL--PSSPKTPLELAIDFILHDF---E--MAEVE-PI---STYVDFGEREFLVADERGYAHLLYKMAE 200 (496)
Q Consensus 142 ~~----------~~--~~~~~~~~~~~~~~~~~~~---~--~~~~~-~~---~~~~~~~~~~~~~~~~~G~~~l~~~l~~ 200 (496)
.. ++ .....++.+++.......+ + ..+.. .+ ...........+..+++|++.|+++|++
T Consensus 155 ~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 234 (463)
T PRK12416 155 FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEE 234 (463)
T ss_pred hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHH
Confidence 10 00 0011122222222111000 0 00000 00 0000001122345668999999999999
Q ss_pred hhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCc
Q 010995 201 EFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVM 280 (496)
Q Consensus 201 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~ 280 (496)
.+. +++|++|++|++|+.+++++.|++.+|+++.||+||+|+|+..+.+ +.+.|+++ +.+..+.+.
T Consensus 235 ~l~--------~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~ 300 (463)
T PRK12416 235 VLT--------ETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNS 300 (463)
T ss_pred hcc--------cccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCC
Confidence 863 2589999999999999989999888888899999999999999987 43555543 345778889
Q ss_pred ceeEEEEEcCCCCCCCC-CCCceEEeecCCCCcc-cccee--ccccCCCCcEEEEEec---cccchhcccCCcHHHHHHH
Q 010995 281 VYTKIFLKFPCKFWPCS-PGKEFFIYAHERRGYY-TFWQH--MENAYPGSNILVVTLT---NGESKRVEAQPDEETLKEA 353 (496)
Q Consensus 281 ~~~~v~l~~~~~~w~~~-~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~vl~~~~~---~~~a~~~~~~~~ee~~~~~ 353 (496)
++.+|++.|++++|... .+++++....+..... ..|.+ +....++..+++..+. +..+..+..++++|+.+.+
T Consensus 301 ~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~ 380 (463)
T PRK12416 301 SLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVA 380 (463)
T ss_pred ceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHH
Confidence 99999999998766432 2345554433222111 12221 1122345566666554 3456678889999999999
Q ss_pred HHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChH---HHHHHhCCCCcEEEccccccCcCCccchHHHHHH
Q 010995 354 MEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQ---LVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAG 430 (496)
Q Consensus 354 ~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG 430 (496)
+++|+++||.. .+|....+++|.+ +++.+.+|+... ..+.+..+.++||+||+++.. .+|++|+.||
T Consensus 381 ~~~L~~~lG~~-~~p~~~~v~~W~~------a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~sg 450 (463)
T PRK12416 381 LYDIEKSLGIK-GEPEVVEVTNWKD------LMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACIGNG 450 (463)
T ss_pred HHHHHHHhCCC-CCceEEEEEEccc------cCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHHHHH
Confidence 99999999854 4688899999976 777777776321 223455667899999999875 4799999999
Q ss_pred HHHHHHHHHHH
Q 010995 431 IDTGKAVVEKI 441 (496)
Q Consensus 431 ~~aA~~il~~l 441 (496)
.+||++|++.+
T Consensus 451 ~~aA~~i~~~~ 461 (463)
T PRK12416 451 KNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=5.6e-39 Score=327.69 Aligned_cols=402 Identities=19% Similarity=0.266 Sum_probs=253.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995 7 SPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR 84 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~ 84 (496)
.+|+|||||+|||+||+.|+++| + +|+|||+++++|||++|.+.+|+.+|.|+|+++. .+++++++++++|+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~-~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lgl~ 75 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDA-DITLLEASDRLGGKIQTVRKDGFPIELGPESFLA----RKPSAPALVKELGLE 75 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCC-CEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC----CcHHHHHHHHHcCCc
Confidence 36999999999999999999988 8 6999999999999999999999999999998887 677899999999997
Q ss_pred cccccCCCcceEEEcCCCccc--Chh--------HHHHHHHHH---HHHHHHHhc-----cccccchhHHHHHHhhh---
Q 010995 85 TCFSDYTNARYNIYDRSGKII--PSG--------VAADSYKKA---VESAIANLK-----NLEATNSNIGEVIKAAT--- 143 (496)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~--~~~--------~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~--- 143 (496)
............++ .+|+.. |.. ......... .+....... .......++.+|+....
T Consensus 76 ~~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~~~~ 154 (451)
T PRK11883 76 DELVANTTGQSYIY-VNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRRFGDE 154 (451)
T ss_pred cceecCCCCcceEE-ECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHhccHH
Confidence 55422211111122 344432 211 000000000 000000000 00111223445553310
Q ss_pred -------cCC--CCCCChHHHHHHHHHhhccc-c-ccCCcc-cc-ccc-----CCcceeeeCcccHHHHHHHHHHhhccC
Q 010995 144 -------ELP--SSPKTPLELAIDFILHDFEM-A-EVEPIS-TY-VDF-----GEREFLVADERGYAHLLYKMAEEFLST 205 (496)
Q Consensus 144 -------~~~--~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-~~-~~~-----~~~~~~~~~~~G~~~l~~~l~~~~~~~ 205 (496)
++. ....++.+++..+....+.. . ....+. .. ... .....+...++|++.++++|++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~- 233 (451)
T PRK11883 155 VVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPA- 233 (451)
T ss_pred HHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcC-
Confidence 000 00112233322221110000 0 000000 00 000 01123446789999999999998642
Q ss_pred CCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEE
Q 010995 206 SDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKI 285 (496)
Q Consensus 206 ~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v 285 (496)
.+|++|++|++|+.++++|.|.+.+|++++||+||+|+|+..+.++ ... +...++++.+++.++.+|
T Consensus 234 -------~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~~~----~~~~~~~~~~~~~~~~~v 300 (451)
T PRK11883 234 -------GTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FVA----PPAFALFKTIPSTSVATV 300 (451)
T ss_pred -------CeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--ccC----hhHHHHHhCCCCCceEEE
Confidence 1799999999999998889888888889999999999999999883 222 234677889999999999
Q ss_pred EEEcCCCCCCCCCCCceEEeecCCCCcccc-ceec--cccCCCCcEEEEEecc-ccchhcccCCcHHHHHHHHHHHHHhc
Q 010995 286 FLKFPCKFWPCSPGKEFFIYAHERRGYYTF-WQHM--ENAYPGSNILVVTLTN-GESKRVEAQPDEETLKEAMEVLQDMF 361 (496)
Q Consensus 286 ~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~vl~~~~~~-~~a~~~~~~~~ee~~~~~~~~L~~~~ 361 (496)
++.|+++++......+++...+++.....+ |.+. ....+++..++..+.+ ........++++++++.++++|++++
T Consensus 301 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 380 (451)
T PRK11883 301 ALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVM 380 (451)
T ss_pred EEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHh
Confidence 999998863222122333222222222222 3321 1122333444444443 33334567899999999999999999
Q ss_pred CCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCC---CCcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995 362 GPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAP---VAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV 438 (496)
Q Consensus 362 ~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p---~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il 438 (496)
|.. .++.+..+++|.. +|+.+.||+ ......++.+ ++||||||+|+.. +++++|+.||.++|++|+
T Consensus 381 g~~-~~~~~~~~~rw~~------a~p~~~~~~-~~~~~~l~~~l~~~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 381 GIT-GDPEFTIVQRWKE------AMPQYGVGH-IERVAELRAGLPHYPGLYVAGASFEG---VGLPDCIAQAKRAAARLL 449 (451)
T ss_pred CCC-CCceEEEEeecCc------cCCCCCccH-HHHHHHHHHhhhhCCCEEEECcccCC---ccHHHHHHHHHHHHHHHH
Confidence 854 4577889999976 788888887 3444444333 5699999999853 579999999999999997
Q ss_pred H
Q 010995 439 E 439 (496)
Q Consensus 439 ~ 439 (496)
+
T Consensus 450 ~ 450 (451)
T PRK11883 450 A 450 (451)
T ss_pred h
Confidence 5
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.3e-38 Score=328.11 Aligned_cols=410 Identities=17% Similarity=0.234 Sum_probs=263.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG 82 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg 82 (496)
..++||+|||||+|||+||++|+++ |+ +|+|||+++++|||++|.+.+|+.+|.|+|++.. .++.+..++++ |
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~----~~~~~~~l~~~-g 83 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP----SDPELTSAVDS-G 83 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCCCCCCceeEeccCCeEEecCCchhcc----CcHHHHHHHHc-C
Confidence 4578999999999999999999999 99 6999999999999999999999999999999987 66777777777 8
Q ss_pred CccccccCCCcceEEEcCCCcccC--hhHHHHH----H--HHHHHHHHHHh---c-cccccchhHHHHHHhhh-------
Q 010995 83 LRTCFSDYTNARYNIYDRSGKIIP--SGVAADS----Y--KKAVESAIANL---K-NLEATNSNIGEVIKAAT------- 143 (496)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~----~--~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~------- 143 (496)
+.............++..+|+..+ ....... + ...+....... . .......++.+|+....
T Consensus 84 l~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~g~~~~~~ 163 (496)
T PLN02576 84 LRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRHLGDEVFER 163 (496)
T ss_pred ChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHhcCHHHHHH
Confidence 875542111111112224565543 2211110 0 00011110000 0 11112233445543310
Q ss_pred ---cCC--CCCCChHHHHHHHHHhhcccc-----c-----cCCc------------ccccccCCcceeeeCcccHHHHHH
Q 010995 144 ---ELP--SSPKTPLELAIDFILHDFEMA-----E-----VEPI------------STYVDFGEREFLVADERGYAHLLY 196 (496)
Q Consensus 144 ---~~~--~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~------------~~~~~~~~~~~~~~~~~G~~~l~~ 196 (496)
++. ....++.+++..+....+... . .... .....-.....+..+++|++.|++
T Consensus 164 ~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~ 243 (496)
T PLN02576 164 LIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPD 243 (496)
T ss_pred HHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHH
Confidence 110 112345555555433221100 0 0000 000000011234566899999999
Q ss_pred HHHHhhccCCCCCccc-cceeeCceeEEEEEcCCc-eEEEe--CCC-cEEEcCEEEEecChHHHhcCCcccCCCCcHHHH
Q 010995 197 KMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNG-VTVKT--EDG-CVYEANYVILSASIGVLQSDLISFKPPLPKWKT 271 (496)
Q Consensus 197 ~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~-v~V~~--~~G-~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~ 271 (496)
+|++.+ + ++|++|++|++|++.+++ +.|++ .+| +++.||+||+|+|+..+... + ++.++...
T Consensus 244 ~la~~l---------~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~l-l---~~~~~~~~ 310 (496)
T PLN02576 244 ALAKRL---------GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEM-L---RPKSPAAA 310 (496)
T ss_pred HHHHhh---------CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHH-h---cccCHHHH
Confidence 999884 4 689999999999998876 65544 355 36999999999999999872 2 23445578
Q ss_pred HHHhhCCCcceeEEEEEcCCCCCCCC-----C--CCceEEeecCCC-Ccccccee--cccc-CCCCcEEEEEeccccchh
Q 010995 272 EAIEKCDVMVYTKIFLKFPCKFWPCS-----P--GKEFFIYAHERR-GYYTFWQH--MENA-YPGSNILVVTLTNGESKR 340 (496)
Q Consensus 272 ~~i~~~~~~~~~~v~l~~~~~~w~~~-----~--~~~~~~~~~~~~-~~~~~~~~--~~~~-~~~~~vl~~~~~~~~a~~ 340 (496)
+++..+++.++.+|++.|++++|..+ + +++.+....+.. ....+|.+ +... +++..+++.++.+..+..
T Consensus 311 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~ 390 (496)
T PLN02576 311 DALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTG 390 (496)
T ss_pred HHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcc
Confidence 88999999999999999999888651 1 112222111111 11122221 1112 223345556666666778
Q ss_pred cccCCcHHHHHHHHHHHHHhcCCCC-CCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhC---CC--CcEEEcccc
Q 010995 341 VEAQPDEETLKEAMEVLQDMFGPDI-PNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRA---PV--AGIFFTGEH 414 (496)
Q Consensus 341 ~~~~~~ee~~~~~~~~L~~~~~~~~-~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~---p~--~~l~~aGd~ 414 (496)
+..++++++++.++++|.+++|... +.+....+++|.+ +++.+.+|+. ...+.+++ +. +|||+||||
T Consensus 391 ~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~------a~P~~~~g~~-~~~~~~~~~l~~~~~~~l~~aG~~ 463 (496)
T PLN02576 391 IASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK------AIPQYLLGHL-DVLEAAEKMEKDLGLPGLFLGGNY 463 (496)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc------ccCCCCcCHH-HHHHHHHHHHHhcCCCCEEEeccc
Confidence 8889999999999999999998532 3566677899976 7888888874 33443333 23 699999999
Q ss_pred ccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995 415 TSERFNGYVHGGYLAGIDTGKAVVEKIR 442 (496)
Q Consensus 415 ~~~~~~g~~egA~~SG~~aA~~il~~l~ 442 (496)
+.. .++++|+.||.++|++|+..+.
T Consensus 464 ~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 464 RGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred cCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 975 4899999999999999998865
No 15
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=3.2e-39 Score=328.56 Aligned_cols=401 Identities=26% Similarity=0.363 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--CcEEeecceEEecCCCCCCChHHHHHHhcCCcccc--ccCC
Q 010995 16 VSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--GVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF--SDYT 91 (496)
Q Consensus 16 iaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~--~~~~ 91 (496)
||||+||++|+++|+ +|+||||++++|||++|.+.+ |+.+|.|+++++. .+..+..++.++++.... ....
T Consensus 1 iaGL~aA~~L~~~G~-~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~ 75 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGY-DVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFG----MYPNLLNLIDELGLELSLETFPFP 75 (450)
T ss_dssp HHHHHHHHHHHHTTT-EEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEET----TSHHHHHHHHHHTHHTTEEEEEES
T ss_pred ChHHHHHHHHHhCCC-CEEEEEcCCCCCcceEEecCCccceeecCCcccccc----cchhhHHHHHHhhhcccccccccc
Confidence 799999999999999 799999999999999999998 9999999999997 777799999999985322 1111
Q ss_pred CcceEEEcCCCcc-c----ChhHHH--------------HHHHHHHHH---HHHHhccc-c----ccchhHHHHHHhhhc
Q 010995 92 NARYNIYDRSGKI-I----PSGVAA--------------DSYKKAVES---AIANLKNL-E----ATNSNIGEVIKAATE 144 (496)
Q Consensus 92 ~~~~~~~~~~g~~-~----~~~~~~--------------~~~~~~~~~---~~~~~~~~-~----~~~~~~~~~~~~~~~ 144 (496)
.. ...+...+.. . ...... ..+...... ........ + .....+.++.....
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (450)
T PF01593_consen 76 QI-PFVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQS- 153 (450)
T ss_dssp SE-EEEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cc-eeeeccccccccccccccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhh-
Confidence 11 1111111111 0 000000 000000000 00000000 0 00000111110000
Q ss_pred CCCCCCChH----HHHHHHHHhhcc--cccc-CC----cc----cccccCCcceeeeCcccHHHHHHHHHHhhccCCCCC
Q 010995 145 LPSSPKTPL----ELAIDFILHDFE--MAEV-EP----IS----TYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGK 209 (496)
Q Consensus 145 ~~~~~~~~~----~~~~~~~~~~~~--~~~~-~~----~~----~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~ 209 (496)
...... ............ .... .. .. ....... ..+....+++..+...+.+.
T Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-------- 221 (450)
T PF01593_consen 154 ---FSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPF-GGLTVGMGGLSLALALAAEE-------- 221 (450)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTS-STEEEETTTTHHHHHHHHHH--------
T ss_pred ---hhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccc-cceeecccchhHHHHHHHhh--------
Confidence 000000 000000000000 0000 00 00 0000111 11122245566666666655
Q ss_pred ccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEc
Q 010995 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKF 289 (496)
Q Consensus 210 ~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~ 289 (496)
.|++|++|++|++|+.++++|+|.+.+|++++||+||+|+|+..+.+ +.+.|+++....++++.+++.+..+|++.|
T Consensus 222 -~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~ 298 (450)
T PF01593_consen 222 -LGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGF 298 (450)
T ss_dssp -HGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred -cCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEee
Confidence 57799999999999999999999999999999999999999999996 668899998889999999999999999999
Q ss_pred CCCCCCCCCCCceEEeecCCCCccccceecc-ccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC-CCCC
Q 010995 290 PCKFWPCSPGKEFFIYAHERRGYYTFWQHME-NAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP-DIPN 367 (496)
Q Consensus 290 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~-~~~~ 367 (496)
+.++|.........++.+.......++.... ...++..++..++.++.+..+..++++++++.++++|+++++. ..++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~ 378 (450)
T PF01593_consen 299 DRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPD 378 (450)
T ss_dssp SSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGE
T ss_pred ecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccc
Confidence 9999988532222333333112112222111 1113567777777776667888999999999999999999974 4577
Q ss_pred CCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCC-CcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995 368 ATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV-AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV 438 (496)
Q Consensus 368 ~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il 438 (496)
+.++.+++|.++++..++|+++.++.....++.+++|+ +||||||||+++.++|+++||+.||.+||++|+
T Consensus 379 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 379 PIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp ESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 88899999999999999999888887556899999999 699999999998777899999999999999986
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=319.27 Aligned_cols=400 Identities=20% Similarity=0.274 Sum_probs=254.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF 87 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~ 87 (496)
+|+|||||+|||+||+.|+++|+ +|+|||+++++||++.+.+.+|+.+|.|+|++.. .++++.++++++|+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~-~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~----~~~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK----SDEALLELLDELGLEDKL 75 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc----ccHHHHHHHHHcCCCCce
Confidence 69999999999999999999999 6999999999999999999999999999999987 788999999999997554
Q ss_pred ccCCCcceEEEcCCCcccChh-HH----------HHHHHHHHHHHHHHh-ccc-cccchhHHHHHHhhhcCCCCCCChHH
Q 010995 88 SDYTNARYNIYDRSGKIIPSG-VA----------ADSYKKAVESAIANL-KNL-EATNSNIGEVIKAATELPSSPKTPLE 154 (496)
Q Consensus 88 ~~~~~~~~~~~~~~g~~~~~~-~~----------~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (496)
..... ...++ .+|...+.. .. .+............. ... .....++.+|+.... .....+
T Consensus 76 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-----~~~~~~ 148 (434)
T PRK07233 76 RWRET-KTGYY-VDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWS-----GEGVYE 148 (434)
T ss_pred eeccC-ceEEE-ECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHhc-----CHHHHH
Confidence 22221 12222 234333311 00 011110000000000 011 111234555554311 001111
Q ss_pred HHHHHHHhhccccccCCccc------c-----cccC-CcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeE
Q 010995 155 LAIDFILHDFEMAEVEPIST------Y-----VDFG-EREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR 222 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~------~-----~~~~-~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~ 222 (496)
..++.+...........++. + .... ....+..+++|++.++++|.+.+.+ .|++|++|++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~------~g~~v~~~~~V~ 222 (434)
T PRK07233 149 VFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEA------RGGEIRLGTPVT 222 (434)
T ss_pred HHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHh------cCceEEeCCCee
Confidence 11111111100000000000 0 0000 0112445689999999999999877 689999999999
Q ss_pred EEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCce
Q 010995 223 ELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEF 302 (496)
Q Consensus 223 ~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~ 302 (496)
+|+.+++++++.+.++++++||+||+|+|+..+.+ ++ |.++....+.++.+.+.+..++++.|+++.+. .+
T Consensus 223 ~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~-ll---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 293 (434)
T PRK07233 223 SVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILAR-LV---PDLPADVLARLRRIDYQGVVCMVLKLRRPLTD-----YY 293 (434)
T ss_pred EEEEcCCceEEEEeCCceEECCEEEECCCHHHHHh-hc---CCCcHHHHhhhcccCccceEEEEEEecCCCCC-----Cc
Confidence 99998888775556677899999999999999887 22 55666667788889999999999999987532 11
Q ss_pred EEe-ecCCCCccccce--eccc--cCCCCcEEE-EEeccccchhcccCCcHHHHHHHHHHHHHhcC-CCCCCCCeeEecc
Q 010995 303 FIY-AHERRGYYTFWQ--HMEN--AYPGSNILV-VTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIPNATDILVPR 375 (496)
Q Consensus 303 ~~~-~~~~~~~~~~~~--~~~~--~~~~~~vl~-~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~-~~~~~~~~~~~~r 375 (496)
+.+ .++...+..++. .... .+++.+++. ..+.... ..+..++++++++.++++|.++++ ....++.+..+.|
T Consensus 294 ~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r 372 (434)
T PRK07233 294 WLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGD-HPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISR 372 (434)
T ss_pred eeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCC-ChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEE
Confidence 111 111111111111 1111 124455443 2233222 234567899999999999999997 3223455666666
Q ss_pred cCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995 376 WWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442 (496)
Q Consensus 376 w~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~ 442 (496)
|.. +++.+.||. ....+.+.+|++|||||||++...+.++|++|+.||.+||++|++.++
T Consensus 373 ~~~------a~~~~~~g~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 373 APY------AQPIYEPGY-LDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred ecc------ccccccCch-hhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 643 555566774 456677788999999999965443445899999999999999998875
No 17
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.1e-37 Score=321.84 Aligned_cols=407 Identities=18% Similarity=0.261 Sum_probs=252.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGL 83 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl 83 (496)
...+|+|||||++||+||++|+++|+ +|+|+|+++++||++.|++ .+|+.+|.|+|++.+ .++++.++++++|+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g----~~~~~~~ll~elG~ 166 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFG----AYPNVQNLFGELGI 166 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeC----CCchHHHHHHHhCC
Confidence 45789999999999999999999999 6999999999999999977 478999999999998 78899999999999
Q ss_pred ccccccCCCcceEEEcC--CCcc--------cChhH--HHHHHHH-----HHHHH------H-HHhc---cc-cccchhH
Q 010995 84 RTCFSDYTNARYNIYDR--SGKI--------IPSGV--AADSYKK-----AVESA------I-ANLK---NL-EATNSNI 135 (496)
Q Consensus 84 ~~~~~~~~~~~~~~~~~--~g~~--------~~~~~--~~~~~~~-----~~~~~------~-~~~~---~~-~~~~~~~ 135 (496)
..... +......+... .+.. .|... ....+.. ..+.. . .... .. .....++
T Consensus 167 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv 245 (567)
T PLN02612 167 NDRLQ-WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSV 245 (567)
T ss_pred cccce-ecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcH
Confidence 76542 21111111111 1111 11110 1111100 00100 0 0000 00 1112345
Q ss_pred HHHHHhhhc-----------C--CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccH-HHHHHHHHHh
Q 010995 136 GEVIKAATE-----------L--PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGY-AHLLYKMAEE 201 (496)
Q Consensus 136 ~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~l~~~l~~~ 201 (496)
.+|+..... + .....++.+.+..++...+. .+........+....++. +.++++|++.
T Consensus 246 ~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~--------~~l~~~~gs~~~~~~G~~~~~l~~~l~~~ 317 (567)
T PLN02612 246 KEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALN--------RFLQEKHGSKMAFLDGNPPERLCMPIVDH 317 (567)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHH--------HHHhccCCceEeeecCCchHHHHHHHHHH
Confidence 555553000 0 00011222222222221100 010001111222334444 6788999988
Q ss_pred hccCCCCCccccceeeCceeEEEEEcCCc-e-EEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCC
Q 010995 202 FLSTSDGKILDNRLKLNKVVRELQHSRNG-V-TVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV 279 (496)
Q Consensus 202 ~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~ 279 (496)
+.+ .|++|++|++|++|+.++++ + .|.+.+|++++||+||+|+|+..+.+ ++.. ...+....+.++.+.+
T Consensus 318 l~~------~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~-Ll~~-~~~~~~~~~~l~~l~~ 389 (567)
T PLN02612 318 FQS------LGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKL-LLPD-QWKEIPYFKKLDKLVG 389 (567)
T ss_pred HHh------cCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHH-hCcc-hhcCcHHHHHHHhcCC
Confidence 876 79999999999999986555 3 37777888899999999999999886 3321 1112234555677888
Q ss_pred cceeEEEEEcCCCCCCCCCCCceEEeecCCCCcccccee----ccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHH
Q 010995 280 MVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQH----MENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAME 355 (496)
Q Consensus 280 ~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~ 355 (496)
.++.+|+++|++++|... ..+++..+... ...+.. .....++..++...+. .+..|..++++|+++.+++
T Consensus 390 ~~v~~v~l~~dr~~~~~~---~~~~~~~~~~~-~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~ 463 (567)
T PLN02612 390 VPVINVHIWFDRKLKNTY---DHLLFSRSPLL-SVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMK 463 (567)
T ss_pred CCeEEEEEEECcccCCCC---CceeecCCCCc-eeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHH
Confidence 899999999999988642 12233322111 111110 0111234444444433 5678999999999999999
Q ss_pred HHHHhcCCCC-CCC--CeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHH
Q 010995 356 VLQDMFGPDI-PNA--TDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGID 432 (496)
Q Consensus 356 ~L~~~~~~~~-~~~--~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~ 432 (496)
+|+++||..+ ++. ..+...++...|++. |. ..|+. ...++..++|++||||||||+...|+++||||+.||.+
T Consensus 464 ~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~--~~-~~pg~-~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~ 539 (567)
T PLN02612 464 ELAKLFPDEISADQSKAKILKYHVVKTPRSV--YK-TVPNC-EPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKL 539 (567)
T ss_pred HHHHHCCcccccccCCceEEEEEEeccCCce--EE-eCCCC-cccCccccCccCCEEEeecceeCCchhhHHHHHHHHHH
Confidence 9999997542 211 222333344444421 22 24444 23456778999999999999998889999999999999
Q ss_pred HHHHHHHHHhc
Q 010995 433 TGKAVVEKIRK 443 (496)
Q Consensus 433 aA~~il~~l~~ 443 (496)
||++|++.++.
T Consensus 540 AA~~I~~~~~~ 550 (567)
T PLN02612 540 CAQSIVQDYEL 550 (567)
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=2.4e-37 Score=314.83 Aligned_cols=397 Identities=19% Similarity=0.260 Sum_probs=251.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC 86 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~ 86 (496)
+|+|||||++||+||++|+++|+ +|+|||+++++||++.|.+ .+|+.+|.|.|++.. .+++++++++++|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~-~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGH-TPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFG----AYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCcceeECCCCCEEEcCcceecc----CCchHHHHHHHcCCccc
Confidence 59999999999999999999999 6999999999999999975 578999999999998 78899999999999754
Q ss_pred cccCCCcceEEE--cCCCcc-------cChh--HHHHHHH--------HHHH---HHHHH-h---ccc-cccchhHHHHH
Q 010995 87 FSDYTNARYNIY--DRSGKI-------IPSG--VAADSYK--------KAVE---SAIAN-L---KNL-EATNSNIGEVI 139 (496)
Q Consensus 87 ~~~~~~~~~~~~--~~~g~~-------~~~~--~~~~~~~--------~~~~---~~~~~-~---~~~-~~~~~~~~~~~ 139 (496)
..... ....+. ..++.. ++.+ .....+. .... ..... . ... .....++.+|+
T Consensus 76 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 154 (453)
T TIGR02731 76 LQWKS-HSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWL 154 (453)
T ss_pred eeecC-CceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHH
Confidence 42111 111111 111111 1111 1111110 0000 00000 0 000 01123345555
Q ss_pred Hhh----------h-cC--CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCccc-HHHHHHHHHHhhccC
Q 010995 140 KAA----------T-EL--PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERG-YAHLLYKMAEEFLST 205 (496)
Q Consensus 140 ~~~----------~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~l~~~l~~~~~~~ 205 (496)
... . ++ .....++.+.+..++...+... . ....+. ......++ ++.++++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~-~-----~~~~g~--~~~~~~g~~~~~l~~~l~~~l~~- 225 (453)
T TIGR02731 155 RKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRF-L-----QERHGS--KMAFLDGAPPERLCQPIVDYITS- 225 (453)
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-H-----hcCCCC--eeEeecCCChHHHHHHHHHHHHh-
Confidence 430 0 00 0001233333333332211100 0 000111 11112232 56788888888866
Q ss_pred CCCCccccceeeCceeEEEEEcCCc-eE-EEeCCCc-----EEEcCEEEEecChHHHhcCCcccCCCCc-HHHHHHHhhC
Q 010995 206 SDGKILDNRLKLNKVVRELQHSRNG-VT-VKTEDGC-----VYEANYVILSASIGVLQSDLISFKPPLP-KWKTEAIEKC 277 (496)
Q Consensus 206 ~~~~~~g~~i~~~~~V~~I~~~~~~-v~-V~~~~G~-----~~~ad~VI~A~p~~~l~~~li~~~p~l~-~~~~~~i~~~ 277 (496)
.|++|++|++|++|..++++ ++ |++.+|+ ++.||+||+|+|++.+.+ ++ .+..+ ....+.+..+
T Consensus 226 -----~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~-lL--~~~~~~~~~~~~~~~~ 297 (453)
T TIGR02731 226 -----RGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKL-LL--PQPWKQMPFFQKLNGL 297 (453)
T ss_pred -----cCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHh-hC--chhhhcCHHHHHhhcC
Confidence 68999999999999875544 43 6665554 789999999999999876 32 21221 2345666778
Q ss_pred CCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCccccce----eccccCCCCcEEEEEeccccchhcccCCcHHHHHHH
Q 010995 278 DVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQ----HMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEA 353 (496)
Q Consensus 278 ~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~ 353 (496)
.+.++.++++.|++++|... .+ .+...... ...+. .++...++. .++.++.+ .+..+..++++|+++.+
T Consensus 298 ~~~~~~~v~l~~~~~~~~~~---~~-~~~~~~~~-~~~~~~s~~~~~~~~~~~-~l~~~~~~-~~~~~~~~~~ee~~~~v 370 (453)
T TIGR02731 298 EGVPVINVHIWFDRKLTTVD---HL-LFSRSPLL-SVYADMSETCKEYADPDK-SMLELVFA-PAADWIGRSDEEIIDAT 370 (453)
T ss_pred CCCcEEEEEEEEccccCCCC---ce-eeeCCCcc-eeecchhhhChhhcCCCC-eEEEEEec-ChhhhhcCCHHHHHHHH
Confidence 88899999999999987541 22 22222111 11111 011223444 44444433 34567889999999999
Q ss_pred HHHHHHhcCCCC--CCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHH
Q 010995 354 MEVLQDMFGPDI--PNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431 (496)
Q Consensus 354 ~~~L~~~~~~~~--~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~ 431 (496)
+++|.++||... ..+.++..++|.++||+. | ...||. ..+.+.+++|++||||||+|++..|+|+||||+.||.
T Consensus 371 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~ 446 (453)
T TIGR02731 371 MAELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGK 446 (453)
T ss_pred HHHHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCCC-hhhCccccCccCCEEEeehhccCcccccHHHHHHHHH
Confidence 999999997432 246677788999999873 3 356785 5778889999999999999999989999999999999
Q ss_pred HHHHHHH
Q 010995 432 DTGKAVV 438 (496)
Q Consensus 432 ~aA~~il 438 (496)
+||++|+
T Consensus 447 ~AA~~v~ 453 (453)
T TIGR02731 447 LCAQAIV 453 (453)
T ss_pred HHHHHhC
Confidence 9999873
No 19
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=2e-35 Score=300.99 Aligned_cols=402 Identities=17% Similarity=0.219 Sum_probs=256.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLR 84 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~ 84 (496)
+.+|+|||||++||+||+.|+++|+ +|+|+|+++++||+++++. .+|..+|.|+|++.+ .+++++++++++|+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~----~~~~~~~ll~~LGl~ 149 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFG----CYNNLFRLMKKVGAD 149 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-eeEEEecCCCCCCceeeeeecCCcEEecceeEecC----CcHHHHHHHHhcCCc
Confidence 4599999999999999999999999 6999999999999999985 578999999999998 788999999999998
Q ss_pred cccccCCCcceEEEcCCCcc------cChhHHHHHHHHH--------HHHHHH-----------Hh-------cccc-cc
Q 010995 85 TCFSDYTNARYNIYDRSGKI------IPSGVAADSYKKA--------VESAIA-----------NL-------KNLE-AT 131 (496)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~--------~~~~~~-----------~~-------~~~~-~~ 131 (496)
.... +......++..+|.. ++.+.....+..+ .+.+.. .. +.++ ..
T Consensus 150 ~~~~-~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d 228 (569)
T PLN02487 150 ENLL-VKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLD 228 (569)
T ss_pred cccc-ccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCcccccccccccc
Confidence 6642 222112123344433 2211110001111 011100 00 0000 11
Q ss_pred chhHHHHHHhhhcC-------------CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHH-HHHH
Q 010995 132 NSNIGEVIKAATEL-------------PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAH-LLYK 197 (496)
Q Consensus 132 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-l~~~ 197 (496)
..++.+|+.....- .....++++.+..+....+ ..+........+.++++|+.. |++.
T Consensus 229 ~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl--------~~~~~~~~~~~l~~~~Gg~~~~l~~p 300 (569)
T PLN02487 229 DISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIF--------SLFATKTEASLLRMLKGSPDVRLSGP 300 (569)
T ss_pred CCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH--------HHHhhcCCcceeeecCCCchHHHHHH
Confidence 23456666541100 0001122222222221111 111101111335567899985 9999
Q ss_pred HHHhhccCCCCCccccceeeCceeEEEEEcC--Cc---eE-EEe---CCCcEEEcCEEEEecChHHHhcCCcccCCCCcH
Q 010995 198 MAEEFLSTSDGKILDNRLKLNKVVRELQHSR--NG---VT-VKT---EDGCVYEANYVILSASIGVLQSDLISFKPPLPK 268 (496)
Q Consensus 198 l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~--~~---v~-V~~---~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~ 268 (496)
+++.|++ .|++|+++++|++|..++ ++ ++ |++ .+++++.+|+||+|+|+..+.+ ++ |....
T Consensus 301 l~~~L~~------~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~-Ll---p~~~~ 370 (569)
T PLN02487 301 IAKYITD------RGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR-LL---PEQWR 370 (569)
T ss_pred HHHHHHH------cCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH-hC---Cchhh
Confidence 9999988 799999999999999863 22 33 555 3445789999999999999987 33 33211
Q ss_pred --HHHHHHhhCCCcceeEEEEEcCCCCCCCCC-----------CCceEEeecCCCCcccccee-----cccc--CCCCcE
Q 010995 269 --WKTEAIEKCDVMVYTKIFLKFPCKFWPCSP-----------GKEFFIYAHERRGYYTFWQH-----MENA--YPGSNI 328 (496)
Q Consensus 269 --~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~-----------~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~v 328 (496)
.....+.++...++..|+++|+++.-.... +...+.+..+ . .+.++.. .... ..++..
T Consensus 371 ~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~-~-~~~f~~di~l~~~~~~~~~~~g~~ 448 (569)
T PLN02487 371 EYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSAD-A-DFSCFADLALTSPEDYYKEGEGSL 448 (569)
T ss_pred ccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccC-C-CcceEeeeecCCHHHHcccCCceE
Confidence 236677888889999999999875422110 0010001111 0 1111111 1111 112355
Q ss_pred EEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCC-CCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCc
Q 010995 329 LVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG 407 (496)
Q Consensus 329 l~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~-~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~ 407 (496)
+-.++. .++.+..++++|+++.++++|.++++.. ..++.++.+.+..+ +.....||+ ...+|..++|++|
T Consensus 449 l~~vis--~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~------at~~~~pg~-~~~RP~~~T~~~n 519 (569)
T PLN02487 449 IQAVLT--PGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQ------SLYREAPGM-DPFRPDQKTPISN 519 (569)
T ss_pred EEEEEc--CCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccC------ceeccCCCc-cccCCCCCCCCCC
Confidence 555555 4567889999999999999999999642 22355556666654 444567776 3566888999999
Q ss_pred EEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995 408 IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442 (496)
Q Consensus 408 l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~ 442 (496)
||+||||+..+|+.+||||++||.+||+.|++..+
T Consensus 520 l~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 520 FFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred EEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988764
No 20
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-35 Score=299.64 Aligned_cols=408 Identities=18% Similarity=0.164 Sum_probs=256.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR 84 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~ 84 (496)
+++||+|||||+|||+||+.|+++|+ +|+|+|+++++||+++|...+|+.+|.|+|++.. .+..+.+++++++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~-~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~----~~~~~~~l~~~l~~~ 77 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS----KSPEVMDLWNEILPD 77 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeeeccCCceEccCCceecc----CCHHHHHHHHHhcCC
Confidence 57899999999999999999999999 6999999999999999999999999999999987 889999999999873
Q ss_pred cccccCCCcceEEEcCCCcccC--hhHHHHH----HHHHHH---HHHHHhccccccchhHHHHHHhhh----------cC
Q 010995 85 TCFSDYTNARYNIYDRSGKIIP--SGVAADS----YKKAVE---SAIANLKNLEATNSNIGEVIKAAT----------EL 145 (496)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 145 (496)
......... ..++ .+|...+ ......+ +..... ..............++.+|+.... ++
T Consensus 78 ~~~~~~~~~-~~~~-~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~g~~~~~~~~~p~ 155 (479)
T PRK07208 78 DDFLLRPRL-SRIY-YRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINRFGRRLYSTFFKGY 155 (479)
T ss_pred Ccccccccc-ceEE-ECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhCHHHHHHHHHHh
Confidence 333211111 1122 3455432 2111100 001111 111111111112234555554311 00
Q ss_pred C--CCCCChHHHHHHHHHhhccccccC-Ccc-cccc-----------cC-CcceeeeCcccHHHHHHHHHHhhccCCCCC
Q 010995 146 P--SSPKTPLELAIDFILHDFEMAEVE-PIS-TYVD-----------FG-EREFLVADERGYAHLLYKMAEEFLSTSDGK 209 (496)
Q Consensus 146 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----------~~-~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~ 209 (496)
. ....++.+++..+........... .+. .+.. .. ....+.++++|++.|+++|.+.+.+
T Consensus 156 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~----- 230 (479)
T PRK07208 156 TEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEA----- 230 (479)
T ss_pred hhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHH-----
Confidence 0 011123333333322111100000 000 0000 00 0123456789999999999999876
Q ss_pred ccccceeeCceeEEEEEcCCce-E-EEe--CCCc--EEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCccee
Q 010995 210 ILDNRLKLNKVVRELQHSRNGV-T-VKT--EDGC--VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYT 283 (496)
Q Consensus 210 ~~g~~i~~~~~V~~I~~~~~~v-~-V~~--~~G~--~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~ 283 (496)
.|++|++|++|++|..+++++ . +.. .+|+ ++.||+||+|+|+..+.+ ++ .|+++....++++.+++.+..
T Consensus 231 -~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~-~l--~~~~~~~~~~~~~~l~~~~~~ 306 (479)
T PRK07208 231 -LGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA-AL--DPPPPPEVRAAAAGLRYRDFI 306 (479)
T ss_pred -cCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH-hc--CCCCCHHHHHHHhCCCcceeE
Confidence 689999999999999987763 2 332 2453 589999999999999886 33 356777778888899999999
Q ss_pred EEEEEcCCCCCCCCCCCceEEeecC-CCCc--cccceecc--ccCCCC-cEEEEEeccccchhcccCCcHHHHHHHHHHH
Q 010995 284 KIFLKFPCKFWPCSPGKEFFIYAHE-RRGY--YTFWQHME--NAYPGS-NILVVTLTNGESKRVEAQPDEETLKEAMEVL 357 (496)
Q Consensus 284 ~v~l~~~~~~w~~~~~~~~~~~~~~-~~~~--~~~~~~~~--~~~~~~-~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L 357 (496)
+|++.|+++.+... .+ ++..+ .... ...+..+. ..+++. ..+...+..........++++|+++.++++|
T Consensus 307 ~v~l~~~~~~~~~~---~~-~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L 382 (479)
T PRK07208 307 TVGLLVKELNLFPD---NW-IYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQEL 382 (479)
T ss_pred EEEEEecCCCCCCC---ce-EEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHH
Confidence 99999998754331 11 11111 1111 11111111 122333 2333223222233455789999999999999
Q ss_pred HHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHH---HhCCCCcEEEccccccCcCCccchHHHHHHHHHH
Q 010995 358 QDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNS---IRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTG 434 (496)
Q Consensus 358 ~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~---~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA 434 (496)
.++......++.+..+.+|.. +++.+.+++. ..... +.++.+|||+||++... .+.+|++|+.||+++|
T Consensus 383 ~~l~~~~~~~~~~~~v~r~~~------a~P~y~~~~~-~~~~~~~~~~~~~~~l~laGr~~~~-~~~~~d~a~~sg~~~a 454 (479)
T PRK07208 383 ARLGLIRPADVEDGFVVRVPK------AYPVYDGTYE-RNVEIIRDLLDHFPNLHLVGRNGMH-RYNNQDHSMLTAMLAV 454 (479)
T ss_pred HHcCCCChhheeEEEEEEecC------cccCCCchHH-HHHHHHHHHHHhcCCceeecccccc-ccCChhHHHHHHHHHH
Confidence 997323235577788888865 8888888873 33333 34677899999998765 3468999999999999
Q ss_pred HHHHHH
Q 010995 435 KAVVEK 440 (496)
Q Consensus 435 ~~il~~ 440 (496)
++|++.
T Consensus 455 ~~i~~~ 460 (479)
T PRK07208 455 ENIIAG 460 (479)
T ss_pred HHHhcC
Confidence 998877
No 21
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=3.5e-35 Score=286.58 Aligned_cols=399 Identities=20% Similarity=0.260 Sum_probs=269.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 8 PVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
+|+|||||||||+|||+|++++ + +|+|||+++++||.++|...+|+.+|.|+|.|.. ....+.+++++||+++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~-~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~----~~~~~l~li~eLGled 76 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDV-EVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLA----RKEEILDLIKELGLED 76 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCC-cEEEEecCCCCCceEEEEeeCCEEEeechhheec----chHHHHHHHHHhCcHH
Confidence 6999999999999999999999 8 6999999999999999999999999999999987 4588999999999998
Q ss_pred ccccCCCcceEEEcCCCcccChhHHH------------HHHHHHHHHHHHHhccccccchhHHHHHHhhh----------
Q 010995 86 CFSDYTNARYNIYDRSGKIIPSGVAA------------DSYKKAVESAIANLKNLEATNSNIGEVIKAAT---------- 143 (496)
Q Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 143 (496)
... +......+++.+|+++|.+... .....++..+..........+.++.+|+....
T Consensus 77 ~l~-~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~~fG~ev~~~~~~ 155 (444)
T COG1232 77 KLL-WNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRRRFGEEVVERFIE 155 (444)
T ss_pred hhc-cCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHHHHhHHHHHHHHH
Confidence 874 2222233455677775522111 11112222222222222333334444443311
Q ss_pred cCC--CCCCChHHHHHHHHHhhcccccc---CCcccc-cc-c----CCcceeeeCcccHHHHHHHHHHhhccCCCCCccc
Q 010995 144 ELP--SSPKTPLELAIDFILHDFEMAEV---EPISTY-VD-F----GEREFLVADERGYAHLLYKMAEEFLSTSDGKILD 212 (496)
Q Consensus 144 ~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~-~----~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g 212 (496)
++. ....+.+.++.+..+..+...+. ..+... .. . .....+.+.++|+++|+++|++.+.
T Consensus 156 pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~--------- 226 (444)
T COG1232 156 PLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE--------- 226 (444)
T ss_pred HHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh---------
Confidence 111 11234555555522222111110 000000 00 1 1123567789999999999999964
Q ss_pred cceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCC
Q 010995 213 NRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCK 292 (496)
Q Consensus 213 ~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~ 292 (496)
.+|++|++|+.|.++..++.+.+.+|..++||.||+|+|+..+.+ ++ ++ ....+.+..+.+.+...|.+.|+.+
T Consensus 227 ~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~-ll---~~--~~~~~~~~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 227 AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELAR-LL---GD--EAVSKAAKELQYTSVVTVVVGLDEK 300 (444)
T ss_pred hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHH-Hc---CC--cchhhhhhhccccceEEEEEEeccc
Confidence 459999999999999887888788888999999999999999987 22 22 2346677888888888888888876
Q ss_pred CCCCCC-CCceEEeecCCCCcccccee--ccccCC-CCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCC
Q 010995 293 FWPCSP-GKEFFIYAHERRGYYTFWQH--MENAYP-GSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNA 368 (496)
Q Consensus 293 ~w~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~ 368 (496)
.-+..+ +.++++.+++......+|.+ ++...| +..++.+.+.....+....++|||+++.++++|.++++... ++
T Consensus 301 ~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~-~~ 379 (444)
T COG1232 301 DNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGING-DP 379 (444)
T ss_pred cccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCc-ch
Confidence 222222 33455555443222223442 222233 56677777765555556678899999999999999997653 45
Q ss_pred CeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCC----CCcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995 369 TDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAP----VAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV 438 (496)
Q Consensus 369 ~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p----~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il 438 (496)
.+..+.||.. +++++.+|+. +....++.. +++|+.+|.|... =++..++.+|..||++|+
T Consensus 380 ~~~~v~r~~~------~~PqY~vG~~-~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 380 VFVEVTRWKY------AMPQYEVGHL-DRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred hheeeeeccc------cCCccchhHH-HHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 5889999976 9999999984 444444433 3689999998864 268999999999999875
No 22
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=3.8e-35 Score=297.47 Aligned_cols=398 Identities=17% Similarity=0.211 Sum_probs=241.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC 86 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~ 86 (496)
+|+|||||++||+||+.|+++|+ +|+|+|+++++||+++++. .+|+.+|.|+|++.. .+++++++++++|+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~----~~~~~~~~~~~lg~~~~ 75 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGH-EVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFG----CYANLFRLMKKVGAEDN 75 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCCCceeeeeecCCCceEeeceEEecC----chHHHHHHHHHcCCccc
Confidence 58999999999999999999999 6999999999999999974 679999999999998 78899999999999765
Q ss_pred cccCCCcceEEEcCCCcc--------cChh--HHHHHH-------HH----HHHHH-HHHhc----------cc-cccch
Q 010995 87 FSDYTNARYNIYDRSGKI--------IPSG--VAADSY-------KK----AVESA-IANLK----------NL-EATNS 133 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~--------~~~~--~~~~~~-------~~----~~~~~-~~~~~----------~~-~~~~~ 133 (496)
...... ...+...++.. ++.+ .....+ .. ..... ..... .. .....
T Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (474)
T TIGR02732 76 LLLKEH-THTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKI 154 (474)
T ss_pred cccccc-eeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccc
Confidence 432211 11122223332 1111 111111 00 00000 00000 00 01123
Q ss_pred hHHHHHHhhhcC-------------CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHH-HHHHHH
Q 010995 134 NIGEVIKAATEL-------------PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAH-LLYKMA 199 (496)
Q Consensus 134 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-l~~~l~ 199 (496)
++.+|+...... .....++.+.+..++...+. .+........+.++++|++. +.+.|.
T Consensus 155 t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~--------~~~~~~~~s~~~~~~g~~~~~l~~pl~ 226 (474)
T TIGR02732 155 SFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFM--------LFAAKTEASKLRMLKGSPDKYLTKPIL 226 (474)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------HHHhCCCcceeeeecCCcchhHHHHHH
Confidence 455555541000 00011222222222211100 01111111233344566555 556677
Q ss_pred HhhccCCCCCccccceeeCceeEEEEEcC--Cc---eE-EEeCCC---cEEEcCEEEEecChHHHhcCCcccCCCCcHHH
Q 010995 200 EEFLSTSDGKILDNRLKLNKVVRELQHSR--NG---VT-VKTEDG---CVYEANYVILSASIGVLQSDLISFKPPLPKWK 270 (496)
Q Consensus 200 ~~~~~~~~~~~~g~~i~~~~~V~~I~~~~--~~---v~-V~~~~G---~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~ 270 (496)
+.+.+ .|++|+++++|++|+.++ ++ ++ |.+.+| +++.||+||+|+|+..+.+ ++.-.+... ..
T Consensus 227 ~~L~~------~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~-Ll~~~~~~~-~~ 298 (474)
T TIGR02732 227 EYIEA------RGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR-LLPQEWRQF-EE 298 (474)
T ss_pred HHHHH------CCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh-hCChhhhcC-HH
Confidence 77776 699999999999999854 22 33 445433 5689999999999999987 332111111 25
Q ss_pred HHHHhhCCCcceeEEEEEcCCCCCCCCC-----------CCceEEeecCCCCcccccee-----ccccC-CCC-cEEEEE
Q 010995 271 TEAIEKCDVMVYTKIFLKFPCKFWPCSP-----------GKEFFIYAHERRGYYTFWQH-----MENAY-PGS-NILVVT 332 (496)
Q Consensus 271 ~~~i~~~~~~~~~~v~l~~~~~~w~~~~-----------~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~-~vl~~~ 332 (496)
...+..+.+.++..|+++|+++.-.... +...+.+..+ . .+.++.. ..... ++. .++.+.
T Consensus 299 ~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (474)
T TIGR02732 299 FDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTAD-A-DFSCFADLALTSPDDYYKEGQGSLLQCV 376 (474)
T ss_pred HhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccC-c-cceeeehhhccCHHHHhccCCCeEEEEE
Confidence 6678889999999999999864321100 0000011110 0 0111111 10111 232 333344
Q ss_pred eccccchhcccCCcHHHHHHHHHHHHHhcCC-CCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEc
Q 010995 333 LTNGESKRVEAQPDEETLKEAMEVLQDMFGP-DIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFT 411 (496)
Q Consensus 333 ~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~-~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~a 411 (496)
+. .+..+.+++++|+++.++++|+++|+. ...++.+..+.+..+ +...+.||. ...+|..++|++|||+|
T Consensus 377 ~~--~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~------a~~~~~pg~-~~~~P~~~t~~~~l~lA 447 (474)
T TIGR02732 377 LT--PGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQ------SLYREAPGM-DPFRPDQKTPISNFFLA 447 (474)
T ss_pred Ee--ChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecC------ceeccCCCC-cccCCCCCCCCCCeEEe
Confidence 43 345677899999999999999999973 223455555666544 444566787 35678888999999999
Q ss_pred cccccCcCCccchHHHHHHHHHHHHHH
Q 010995 412 GEHTSERFNGYVHGGYLAGIDTGKAVV 438 (496)
Q Consensus 412 Gd~~~~~~~g~~egA~~SG~~aA~~il 438 (496)
|||+..+|+++||||++||.+||+.|+
T Consensus 448 GD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 448 GSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred ccccccCchHHHhHHHHHHHHHHHHhC
Confidence 999999999999999999999999874
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=1.9e-33 Score=284.26 Aligned_cols=379 Identities=17% Similarity=0.219 Sum_probs=238.1
Q ss_pred HHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCc--EEeecceEEecCCCCCCChHHHHHHhcCCccccccCCCcceEE
Q 010995 20 SAGKILAENGIEDILILEASDRIGGRVRNEKFGGV--SVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNI 97 (496)
Q Consensus 20 ~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~--~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~ 97 (496)
+||+.|+++|+ +|+|||+++++||++.|.+.+|+ .+|.|+|++.. .++++.+++++||++...... ...+.+
T Consensus 1 ~AA~~L~~~G~-~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~----~~~~~~~l~~~lgl~~~~~~~-~~~~~~ 74 (419)
T TIGR03467 1 SAAVELARAGA-RVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG----AYTNLLALLRRIGAEPRLQGP-RLPLPF 74 (419)
T ss_pred ChHHHHHhCCC-ceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc----ccHHHHHHHHHhCCchhhhcc-cCCcce
Confidence 58999999999 69999999999999999998865 49999999998 788999999999998665311 111223
Q ss_pred EcCCCcc-------cChhH--HHHH----------HHHHHHHHHHHhc--cccccchhHHHHHHhhh-c----------C
Q 010995 98 YDRSGKI-------IPSGV--AADS----------YKKAVESAIANLK--NLEATNSNIGEVIKAAT-E----------L 145 (496)
Q Consensus 98 ~~~~g~~-------~~~~~--~~~~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~----------~ 145 (496)
+.+++.. ++.+. .... ...+......... .......++.+|+.... . +
T Consensus 75 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~ 154 (419)
T TIGR03467 75 YDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAAGQSERLIERLWEPL 154 (419)
T ss_pred ecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333321 11111 0000 0011111111111 01112234556655311 0 0
Q ss_pred --CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHH-HHHhhccCCCCCccccceeeCceeE
Q 010995 146 --PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYK-MAEEFLSTSDGKILDNRLKLNKVVR 222 (496)
Q Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~-l~~~~~~~~~~~~~g~~i~~~~~V~ 222 (496)
.....++.+.+..++...+.. .+........+.++++|++.++.. |++.+.+ .|++|++|++|+
T Consensus 155 ~~~~~~~~~~~~s~~~~~~~~~~-------~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~------~g~~i~~~~~V~ 221 (419)
T TIGR03467 155 LLSALNTPPERASAALAAKVLRD-------SFLAGRAASDLLLPRVPLSELFPEPARRWLDS------RGGEVRLGTRVR 221 (419)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHH-------HHhcCCCcceeeeeCCCHHHHHHHHHHHHHHH------cCCEEEcCCeee
Confidence 000112333333222211100 000001112244567888877644 8888766 689999999999
Q ss_pred EEEEcCCceEEEe-CCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCc
Q 010995 223 ELQHSRNGVTVKT-EDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKE 301 (496)
Q Consensus 223 ~I~~~~~~v~V~~-~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~ 301 (496)
+|+.+++++++.. .+|+++.||+||+|+|+..+.+ ++ |. ....+.++.+++.++.++++.|++++|.+.+
T Consensus 222 ~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~-ll---~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~--- 292 (419)
T TIGR03467 222 SIEANAGGIRALVLSGGETLPADAVVLAVPPRHAAS-LL---PG--EDLGALLTALGYSPITTVHLRLDRAVRLPAP--- 292 (419)
T ss_pred EEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHH-hC---CC--chHHHHHhhcCCcceEEEEEEeCCCcCCCCC---
Confidence 9999988876543 3677899999999999999987 22 22 1456778899999999999999999985522
Q ss_pred eEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCC-CCCCeeEecccCCCC
Q 010995 302 FFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDI-PNATDILVPRWWNNR 380 (496)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~-~~~~~~~~~rw~~~~ 380 (496)
++.+..... ..++. .....+....+..++. .+..+..++++++++.++++|.++||... ..+....+.+|....
T Consensus 293 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (419)
T TIGR03467 293 MVGLVGGLA--QWLFD-RGQLAGEPGYLAVVIS--AARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRAT 367 (419)
T ss_pred eeeecCCce--eEEEE-CCcCCCCCCEEEEEEe--cchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCc
Confidence 222211111 11111 1111122334444333 34567788999999999999999997432 345566677775422
Q ss_pred CCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995 381 FQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV 438 (496)
Q Consensus 381 ~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il 438 (496)
| .+.||. ...++.+.+|.+|||||||+++.+++++||||+.||.+||++|+
T Consensus 368 -----~-~~~~g~-~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 368 -----F-AATPGL-NRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred -----c-ccCCcc-cccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 2 234554 23455567889999999999998778899999999999999986
No 24
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=1e-33 Score=248.33 Aligned_cols=324 Identities=20% Similarity=0.306 Sum_probs=232.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC 86 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~ 86 (496)
.+|+||||||+||+||+.|+++|+ .|+|+||+.-+|||+.|.+..+..+|.|+++|.. ....+.++++.+.-+..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~----~~~~F~~~Ve~~~~~gl 76 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR-EVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP----RDELFLRAVEALRDDGL 76 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc-EEEEEEcCCCcccchheeccCCccccccceeecC----CchHHHHHHHHHHhCCc
Confidence 579999999999999999999999 6999999999999999999999899999999998 78888887776553333
Q ss_pred cccCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhccc
Q 010995 87 FSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEM 166 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (496)
...+... +|...|.-.+
T Consensus 77 V~~W~~~---~~~~~~~~~~------------------------------------------------------------ 93 (331)
T COG3380 77 VDVWTPA---VWTFTGDGSP------------------------------------------------------------ 93 (331)
T ss_pred eeecccc---ccccccCCCC------------------------------------------------------------
Confidence 3222221 1111111000
Q ss_pred cccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC-cEEEcCE
Q 010995 167 AEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG-CVYEANY 245 (496)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~ 245 (496)
.-+...- +..+-||..|.+.|+..+ +|.++++|++|.+.++.|++.+++| +..++|.
T Consensus 94 ----------~~~d~~p-yvg~pgmsalak~LAtdL-----------~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~ 151 (331)
T COG3380 94 ----------PRGDEDP-YVGEPGMSALAKFLATDL-----------TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDD 151 (331)
T ss_pred ----------CCCCCCc-cccCcchHHHHHHHhccc-----------hhhhhhhhhhheecCCeeEEEecCCCcccccce
Confidence 0000010 223568999999887764 6999999999999999999999766 5679999
Q ss_pred EEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCccccceecccc---
Q 010995 246 VILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENA--- 322 (496)
Q Consensus 246 VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 322 (496)
||+|+|.+++..++-.....+|+..+..+..+.|.++..+.+.|+.+.-...++ +++ ++. ..-|...+..
T Consensus 152 vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~v--dg~---~laWla~d~sK~g 224 (331)
T COG3380 152 VVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFV--DGH---PLAWLARDASKKG 224 (331)
T ss_pred EEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC--ccc--CCC---eeeeeeccccCCC
Confidence 999999999886322122357888889999999999999999998654322222 222 111 1234443322
Q ss_pred -CCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHH
Q 010995 323 -YPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSI 401 (496)
Q Consensus 323 -~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~ 401 (496)
.+...+++.....+.+....+.++++.+..+.....+..+...+.|.....++|.- +.++...+. +.+
T Consensus 225 ~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrY------A~P~~~~~~-----~~L 293 (331)
T COG3380 225 HVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRY------AIPNDAVAG-----PPL 293 (331)
T ss_pred CCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhcccc------ccccccccC-----Ccc
Confidence 23445777777777888888888888887777778888876778888888999942 222211111 112
Q ss_pred h-CCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010995 402 R-APVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKI 441 (496)
Q Consensus 402 ~-~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l 441 (496)
- .+-.+||+||||++. |-+|||++||+.+|.+|++.|
T Consensus 294 ~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 294 DADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred ccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 1 344689999999986 789999999999999998753
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=3.8e-30 Score=264.40 Aligned_cols=412 Identities=16% Similarity=0.189 Sum_probs=228.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC 86 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~ 86 (496)
.||||||||++||+||..|+++|+ +|+|||+++++||+++|++.+|+.||.|++++..+. ....+..+++++|+...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~-~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~--~~~~~~~~~~~lg~~~~ 78 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLE--PGGIHARIFRELGIPLP 78 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCccceeccCCEEEeecceEEEecC--cCCHHHHHHHHcCCCCc
Confidence 689999999999999999999999 699999999999999999999999999999997631 23446678889998733
Q ss_pred cccCCCcceEEEcCCCc-ccC--hh---HHHH----------HHHHHH---HHHHHHhcccc---ccc------------
Q 010995 87 FSDYTNARYNIYDRSGK-IIP--SG---VAAD----------SYKKAV---ESAIANLKNLE---ATN------------ 132 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~g~-~~~--~~---~~~~----------~~~~~~---~~~~~~~~~~~---~~~------------ 132 (496)
.....+..+.++.++|. .+. .. ...+ .+.... +.........+ ...
T Consensus 79 ~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (492)
T TIGR02733 79 EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALR 158 (492)
T ss_pred ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcC
Confidence 11111222334445652 221 00 0000 011100 00000000000 000
Q ss_pred -----------hhHHHHHHhhhcCCCCCCChHHHHHHHHHhhcccc---ccCCccc--cccc-CCcceeeeCcccHHHHH
Q 010995 133 -----------SNIGEVIKAATELPSSPKTPLELAIDFILHDFEMA---EVEPIST--YVDF-GEREFLVADERGYAHLL 195 (496)
Q Consensus 133 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~-~~~~~~~~~~~G~~~l~ 195 (496)
.++.+++.. .........+..+.+........ +...... ...+ .......+++||++.|+
T Consensus 159 ~~~~~~~~~~~~s~~~~l~~---~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~ 235 (492)
T TIGR02733 159 PDTLLTGPLSLLTVADLLRL---CGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLS 235 (492)
T ss_pred hhhhhhhhhhhhhHHHHHHH---hCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHH
Confidence 001111111 00000001111111111000000 0000000 0011 11112345689999999
Q ss_pred HHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCC-----cEEEcCEEEEecChHHHhcCCcccCCCCcHH
Q 010995 196 YKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDG-----CVYEANYVILSASIGVLQSDLISFKPPLPKW 269 (496)
Q Consensus 196 ~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G-----~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~ 269 (496)
++|++.+++ .|++|++|++|++|..++++++ |.+.+| +++.||+||+|+|+..+.+ ++ ..+.+++.
T Consensus 236 ~aL~~~~~~------~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~-ll-~~~~~~~~ 307 (492)
T TIGR02733 236 DRLVEALKR------DGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE-LL-GPLGLPPG 307 (492)
T ss_pred HHHHHHHHh------cCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH-hc-CcccCCHH
Confidence 999999887 6999999999999999877543 433333 5789999999999999987 33 33567766
Q ss_pred HHHHHhhCCCcc-eeEEEEEcCCCCCCCC-CCCceEEeecCCCCccccceecc--ccCCCCcEEEEEeccccchhcccC-
Q 010995 270 KTEAIEKCDVMV-YTKIFLKFPCKFWPCS-PGKEFFIYAHERRGYYTFWQHME--NAYPGSNILVVTLTNGESKRVEAQ- 344 (496)
Q Consensus 270 ~~~~i~~~~~~~-~~~v~l~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl~~~~~~~~a~~~~~~- 344 (496)
..+.++++++.+ .+++++.+++..-+.. .......+.... .++......+ ..++|..+++.....+ ...|..+
T Consensus 308 ~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~aP~G~~~l~~~~~~~-~~~~~~~~ 385 (492)
T TIGR02733 308 YRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQG-SLFVSISQEGDGRAPQGEATLIASSFTD-TNDWSSLD 385 (492)
T ss_pred HHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCc-eEEEEeCCccccCCCCCceEEEEEcCCC-HHHHcCCC
Confidence 777788888776 4578899987421111 111112222111 1111111111 1334666665444322 2233222
Q ss_pred ------CcHHHHHHHHHHHHHhcCCCCCC-CCeeEe------cccCCCCCCCcccCCCC--CCCChHHHHHHhCCCCcEE
Q 010995 345 ------PDEETLKEAMEVLQDMFGPDIPN-ATDILV------PRWWNNRFQRGSYSNYP--IISDNQLVNSIRAPVAGIF 409 (496)
Q Consensus 345 ------~~ee~~~~~~~~L~~~~~~~~~~-~~~~~~------~rw~~~~~~~g~~~~~~--~g~~~~~~~~~~~p~~~l~ 409 (496)
-.+++.+.+++.|++.++ ...+ ++...+ .++...+ .|++.... +.+.....+..++|++|||
T Consensus 386 ~~~y~~~k~~~~~~il~~le~~~p-~l~~~i~~~~v~TP~t~~~~~~~~--~G~~~G~~~~~~q~~~~~~~~~t~i~gLy 462 (492)
T TIGR02733 386 EEDYTAKKKQYTQTIIERLGHYFD-LLEENWVHVELATPRTFERWTGRP--QGIVGGLGQRPSTFGPFGLSSRTPVKGLW 462 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CccccEEEEEccCCchHHHHhCCC--CcEECCCCcCccccCCcCCCCCCCCCCeE
Confidence 134577778888888775 2222 221111 2222211 33322111 2221112223367999999
Q ss_pred EccccccCcCCccchHHHHHHHHHHHHHHH
Q 010995 410 FTGEHTSERFNGYVHGGYLAGIDTGKAVVE 439 (496)
Q Consensus 410 ~aGd~~~~~~~g~~egA~~SG~~aA~~il~ 439 (496)
|||++++++ +++.|++.||..||++|++
T Consensus 463 l~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 463 LCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred EecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 999999773 4799999999999999985
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.97 E-value=2.7e-29 Score=258.93 Aligned_cols=418 Identities=15% Similarity=0.156 Sum_probs=224.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc--cc
Q 010995 9 VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR--TC 86 (496)
Q Consensus 9 VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~--~~ 86 (496)
|||||||++||+||.+|+++|+ +|+|||+++++||+++|++.+|+.+|.|++++.. . ..+.++++++|++ ..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~-~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~----~-~~~~~l~~~lg~~l~~~ 74 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGI-PVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM----P-EALEELFALAGRDLADY 74 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCC-cEEEEECCCCCcCceEEEecCCeEEecCCeEEcc----c-cHHHHHHHHcCCChhhe
Confidence 7999999999999999999999 6999999999999999999999999999999864 2 5667888888853 11
Q ss_pred c--ccCCCcceEEEcCCCcccChh----HHH-----------HHHHHHHHHHHHHhc----c-ccccchhHHHHHHhh--
Q 010995 87 F--SDYTNARYNIYDRSGKIIPSG----VAA-----------DSYKKAVESAIANLK----N-LEATNSNIGEVIKAA-- 142 (496)
Q Consensus 87 ~--~~~~~~~~~~~~~~g~~~~~~----~~~-----------~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~-- 142 (496)
. .... ..+.++.++|..++.. ... +.+..+.+....... . ......+...+....
T Consensus 75 l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (502)
T TIGR02734 75 VELVPLD-PFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLP 153 (502)
T ss_pred EEEEECC-CceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhH
Confidence 1 1111 2233444556543311 000 011111111111000 0 000000011111000
Q ss_pred -hcCCCCCCChHHHHHHH--------HHh-hccccccCCc-----cccccc-CCcceeeeCcccHHHHHHHHHHhhccCC
Q 010995 143 -TELPSSPKTPLELAIDF--------ILH-DFEMAEVEPI-----STYVDF-GEREFLVADERGYAHLLYKMAEEFLSTS 206 (496)
Q Consensus 143 -~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~G~~~l~~~l~~~~~~~~ 206 (496)
...........+....+ +.. ........+. .....+ ..........+|++.++++|.+.+++
T Consensus 154 ~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~-- 231 (502)
T TIGR02734 154 QLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAED-- 231 (502)
T ss_pred hhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHH--
Confidence 00000000000000000 000 0000000000 000000 00122335678999999999999887
Q ss_pred CCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCC-cHHHHHHHhhCCCc-cee
Q 010995 207 DGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPL-PKWKTEAIEKCDVM-VYT 283 (496)
Q Consensus 207 ~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l-~~~~~~~i~~~~~~-~~~ 283 (496)
.|++|+++++|++|..++++ +.|++.+|+++.||.||+|+++..+...++ .+.. ++...+.++++.++ +.+
T Consensus 232 ----~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s~~ 305 (502)
T TIGR02734 232 ----LGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPSLF 305 (502)
T ss_pred ----CCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCeee
Confidence 79999999999999988776 458888888899999999999977765333 2222 22233445555643 467
Q ss_pred EEEEEcCC--CCCCCCCCCceEEeecCCC--------C----cccccee----cc--ccCCCCcEEEEEecccc----ch
Q 010995 284 KIFLKFPC--KFWPCSPGKEFFIYAHERR--------G----YYTFWQH----ME--NAYPGSNILVVTLTNGE----SK 339 (496)
Q Consensus 284 ~v~l~~~~--~~w~~~~~~~~~~~~~~~~--------~----~~~~~~~----~~--~~~~~~~vl~~~~~~~~----a~ 339 (496)
++++.++. .-|+......++...+... + ...++.+ .+ ..++|..++.++...+. ..
T Consensus 306 ~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~ 385 (502)
T TIGR02734 306 VLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADV 385 (502)
T ss_pred EEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCC
Confidence 78888873 1233211111111111000 0 0111111 11 23345555544433221 11
Q ss_pred hcccCCcHHHHHHHHHHHHHh-cCCCCCCCCeeE------ecccCCCCCCCcccCCCC--CCCChHHHHH-HhCCCCcEE
Q 010995 340 RVEAQPDEETLKEAMEVLQDM-FGPDIPNATDIL------VPRWWNNRFQRGSYSNYP--IISDNQLVNS-IRAPVAGIF 409 (496)
Q Consensus 340 ~~~~~~~ee~~~~~~~~L~~~-~~~~~~~~~~~~------~~rw~~~~~~~g~~~~~~--~g~~~~~~~~-~~~p~~~l~ 409 (496)
.|.. ..+++.+.+++.|++. ++.-...++... ..++...+ .|+..... ..+....++. ..+|++|||
T Consensus 386 ~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~--~G~~~G~~~~~~q~~~~rp~~~~t~i~gLy 462 (502)
T TIGR02734 386 DWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAW--LGSAFSLEHTLTQSAWFRPHNRDRKIDNLY 462 (502)
T ss_pred CcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCC--CccccchhhchhhcccCCCCCCCCCCCCEE
Confidence 2322 2456788889999887 642111122111 12222111 33322111 1111112222 356899999
Q ss_pred EccccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995 410 FTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446 (496)
Q Consensus 410 ~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~ 446 (496)
+||++++++ +++.||+.||..||+.|+...+.+++
T Consensus 463 l~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~~~~ 497 (502)
T TIGR02734 463 LVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAPGPE 497 (502)
T ss_pred EeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccCCCC
Confidence 999999763 47999999999999999998776654
No 27
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.97 E-value=5.5e-28 Score=225.59 Aligned_cols=412 Identities=18% Similarity=0.209 Sum_probs=259.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCCCCeEEEe-eeeCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVWELASKSG 82 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~~GGr~~t-~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg 82 (496)
...+|+|+|||||||++||+|++.+.+ .|+|+|+++|+||.++| ..-+++.||.|++.+.+.+ ...-.+.+++++||
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag-~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAG-PGGAETLDLVSDLG 88 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCC-cchhHHHHHHHHcC
Confidence 467999999999999999999999873 25669999999999999 4567999999999998832 12336899999999
Q ss_pred CccccccCCCc----ceEEEcCCCcc--cChhHH-----------HHHHHHHHHHHHHHh--ccccccchh--HHHHHHh
Q 010995 83 LRTCFSDYTNA----RYNIYDRSGKI--IPSGVA-----------ADSYKKAVESAIANL--KNLEATNSN--IGEVIKA 141 (496)
Q Consensus 83 l~~~~~~~~~~----~~~~~~~~g~~--~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~ 141 (496)
+++...+.... ...+.+..|++ +|.... ..++..++....+.. ....|+++. +++.|+.
T Consensus 89 l~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~RrfG~ 168 (491)
T KOG1276|consen 89 LEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARRRFGK 168 (491)
T ss_pred ccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHHhhhH
Confidence 98766443321 11233455554 232221 112233332222221 122334431 2222222
Q ss_pred -----hh-cCC--CCCCChHHHHHHHHHhhccccc----------------------cCCcccccccCCcceeeeCcccH
Q 010995 142 -----AT-ELP--SSPKTPLELAIDFILHDFEMAE----------------------VEPISTYVDFGEREFLVADERGY 191 (496)
Q Consensus 142 -----~~-~~~--~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~G~ 191 (496)
.+ ++. ....++..++....+..+...+ .+.........+.......++|+
T Consensus 169 eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGl 248 (491)
T KOG1276|consen 169 EVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGL 248 (491)
T ss_pred HHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhH
Confidence 11 111 1234666666665543222111 00000001111122334568999
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC-CceEEEe--CCCc-EEEcCEEEEecChHHHhcCCcccCCCCc
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR-NGVTVKT--EDGC-VYEANYVILSASIGVLQSDLISFKPPLP 267 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~V~~--~~G~-~~~ad~VI~A~p~~~l~~~li~~~p~l~ 267 (496)
+.+++++.+.|.+ ..+.|.++.++..+.... ++|.+++ .++. ....+++..|+|...+.. ..+.+.
T Consensus 249 e~lP~a~~~~L~~------~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~~~~ 318 (491)
T KOG1276|consen 249 ETLPKALRKSLGE------REVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLRGLQ 318 (491)
T ss_pred hHhHHHHHHHhcc------cchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hccccc
Confidence 9999999999887 468889999999888754 5566554 4442 345666667999999887 235555
Q ss_pred HHHHHHHhhCCCcceeEEEEEcCCCC-CCCCCCCceEEeecCCC---Ccccccee--ccccCCCCcEEEEEeccccchhc
Q 010995 268 KWKTEAIEKCDVMVYTKIFLKFPCKF-WPCSPGKEFFIYAHERR---GYYTFWQH--MENAYPGSNILVVTLTNGESKRV 341 (496)
Q Consensus 268 ~~~~~~i~~~~~~~~~~v~l~~~~~~-w~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~vl~~~~~~~~a~~~ 341 (496)
+....++..++|.++..|.+.|.++- -.+..+++.+++..... .+.++|++ +++.. +.+.+++++.+...+.+
T Consensus 319 ~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~-~s~~vtvm~gg~~~~n~ 397 (491)
T KOG1276|consen 319 NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRS-PSPKVTVMMGGGGSTNT 397 (491)
T ss_pred hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCC-CCceEEEEecccccccC
Confidence 56778889999999999999998753 12234667777642211 23345553 22222 23355555554443333
Q ss_pred c--cCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChH---HHHHHhC-CCCcEEEccccc
Q 010995 342 E--AQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQ---LVNSIRA-PVAGIFFTGEHT 415 (496)
Q Consensus 342 ~--~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~---~~~~~~~-p~~~l~~aGd~~ 415 (496)
. ..|.||+++.+.++|+++++... .|....++-|.+ |.++|..|+... ....+.+ +-.+|+++|.|+
T Consensus 398 ~~~~~S~ee~~~~v~~alq~~Lgi~~-~P~~~~v~l~~~------ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y 470 (491)
T KOG1276|consen 398 SLAVPSPEELVNAVTSALQKMLGISN-KPVSVNVHLWKN------CIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHY 470 (491)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCC-Ccccccceehhh------cccceecchHHHHHHHHHHHHhCCCCceEeecccc
Confidence 3 35899999999999999998643 477667777866 999999998532 1222222 226899999999
Q ss_pred cCcCCccchHHHHHHHHHHHHHH
Q 010995 416 SERFNGYVHGGYLAGIDTGKAVV 438 (496)
Q Consensus 416 ~~~~~g~~egA~~SG~~aA~~il 438 (496)
.. -.+...+.||.++|.+++
T Consensus 471 ~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 471 GG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred CC---CChhHHHHhhHHHHHhhc
Confidence 75 257788888888887764
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.96 E-value=6e-27 Score=240.30 Aligned_cols=420 Identities=15% Similarity=0.165 Sum_probs=222.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCC-CCChHHHHHHhcCCcc
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGK-ESNPVWELASKSGLRT 85 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~-~~~~~~~l~~~lgl~~ 85 (496)
+||||||||++||+||..|+++|+ +|+|||+++.+||++++++.+|+.||.|++++.+++.. ..+.+.+++..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGA-KVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCC-cEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 589999999999999999999999 69999999999999999999999999999998764311 2234566777666432
Q ss_pred ccccCCCcceEEEcCCCcccCh-hHH----H----------HHHHHHHHHHHHHhc---cccc----cchhH-HHHHHh-
Q 010995 86 CFSDYTNARYNIYDRSGKIIPS-GVA----A----------DSYKKAVESAIANLK---NLEA----TNSNI-GEVIKA- 141 (496)
Q Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~-~~~----~----------~~~~~~~~~~~~~~~---~~~~----~~~~~-~~~~~~- 141 (496)
... .....+.+..++|..+.. ... + +.+.++.+....... .... ....+ ..+...
T Consensus 80 ~~~-~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (493)
T TIGR02730 80 ETI-PDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHP 158 (493)
T ss_pred ccc-CCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhch
Confidence 221 111123334445533220 000 0 112222221111110 0000 00000 000000
Q ss_pred -----hhcCC----------CCCCChHHHHHHHHHhhcccc--ccCCc----ccccccCCcceeeeCcccHHHHHHHHHH
Q 010995 142 -----ATELP----------SSPKTPLELAIDFILHDFEMA--EVEPI----STYVDFGEREFLVADERGYAHLLYKMAE 200 (496)
Q Consensus 142 -----~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~G~~~l~~~l~~ 200 (496)
...+. .......+..+.......... ...+. ..+... .........+|++.++++|.+
T Consensus 159 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-~~~g~~~~~gG~~~l~~~L~~ 237 (493)
T TIGR02730 159 LACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDR-HYGGINYPKGGVGQIAESLVK 237 (493)
T ss_pred hhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhccc-ccceEecCCChHHHHHHHHHH
Confidence 00000 000000111111000000000 00000 011111 112334568899999999999
Q ss_pred hhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCC
Q 010995 201 EFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV 279 (496)
Q Consensus 201 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~ 279 (496)
.+++ .|++|+++++|++|..+++++. |++.+|++++||.||+|+++..+...++. ...++......++++..
T Consensus 238 ~~~~------~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~ 310 (493)
T TIGR02730 238 GLEK------HGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNYVK 310 (493)
T ss_pred HHHH------CCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhHHHHhhccC
Confidence 9988 7999999999999998877654 88888888999999999987655542332 12234333444455554
Q ss_pred c-ceeEEEEEcCCCCCCCCCCCceEEeec-C--CCCcccccee----cc--ccCCCCcEEEEEeccccchhcccCC----
Q 010995 280 M-VYTKIFLKFPCKFWPCSPGKEFFIYAH-E--RRGYYTFWQH----ME--NAYPGSNILVVTLTNGESKRVEAQP---- 345 (496)
Q Consensus 280 ~-~~~~v~l~~~~~~w~~~~~~~~~~~~~-~--~~~~~~~~~~----~~--~~~~~~~vl~~~~~~~~a~~~~~~~---- 345 (496)
+ +..++++.++.+.-+.......+...+ + ......++.+ .+ ..++|..++.++.. .....|.+++
T Consensus 311 s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~-~~~~~w~~~~~~~y 389 (493)
T TIGR02730 311 SPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP-SSMEDWQGLSPKDY 389 (493)
T ss_pred CCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC-CChhhccCCCcHHH
Confidence 4 467889999874322211101111110 0 0000111111 11 12345555544432 2233343322
Q ss_pred ---cHHHHHHHHHHHHHhcCCCCCCCCeeE------ecccCCCCCCCcccCCCCCCCChHHH--HHHhCCCCcEEEcccc
Q 010995 346 ---DEETLKEAMEVLQDMFGPDIPNATDIL------VPRWWNNRFQRGSYSNYPIISDNQLV--NSIRAPVAGIFFTGEH 414 (496)
Q Consensus 346 ---~ee~~~~~~~~L~~~~~~~~~~~~~~~------~~rw~~~~~~~g~~~~~~~g~~~~~~--~~~~~p~~~l~~aGd~ 414 (496)
.+++.+.+++.|++.++.-....+... ..|+.. ...|+|...+-....... +..++|++|||+||++
T Consensus 390 ~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~--~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~ 467 (493)
T TIGR02730 390 EAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLG--RDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDS 467 (493)
T ss_pred HHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhC--CCCcccCCcccccccccccCCCCCCCCCCeEEecCc
Confidence 345778888888888742111121111 112211 113444211100000011 2356889999999999
Q ss_pred ccCcCCccchHHHHHHHHHHHHHHHHH
Q 010995 415 TSERFNGYVHGGYLAGIDTGKAVVEKI 441 (496)
Q Consensus 415 ~~~~~~g~~egA~~SG~~aA~~il~~l 441 (496)
++++ +++.||+.||..||++|+..+
T Consensus 468 ~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 468 CFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 9763 589999999999999998764
No 29
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=9.7e-27 Score=225.99 Aligned_cols=405 Identities=17% Similarity=0.182 Sum_probs=229.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee-CCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF-GGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~-~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
.+|+|+|||+|||+||++|+++|+ +|||+|+++++||.+.|++. +|..+|+|-|.|++ .|.+++.++++++.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~-~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~----~Y~n~~~ll~~~~~~~ 75 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFG----CYYNLLTLLKELPIED 75 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-ceEEEeccCccCceeeeeecCCCCeeeeeeEEech----hHHHHHHHhhhCCchh
Confidence 479999999999999999999999 79999999999999999885 68999999999999 9999999999999885
Q ss_pred ccccCCCcceEE---EcCCCcc---------cChhHHHHHH-------HHHHHHH----------HHHhccccccchhHH
Q 010995 86 CFSDYTNARYNI---YDRSGKI---------IPSGVAADSY-------KKAVESA----------IANLKNLEATNSNIG 136 (496)
Q Consensus 86 ~~~~~~~~~~~~---~~~~g~~---------~~~~~~~~~~-------~~~~~~~----------~~~~~~~~~~~~~~~ 136 (496)
..+-.+. ...+ -...|.. .|.......+ ....... .+....+ ...++.
T Consensus 76 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~el--d~~s~~ 152 (485)
T COG3349 76 RLQLREH-TKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLREL--DKISFA 152 (485)
T ss_pred eeehHhh-hhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHH--hcccHH
Confidence 5421111 0000 0111111 0110000000 0000000 0000111 112355
Q ss_pred HHHHhhhcCCCCCCChHHHHHHHHHhhccccccCCcc--------cccccC--CcceeeeCccc-HHHHHHHHHHhhccC
Q 010995 137 EVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPIS--------TYVDFG--EREFLVADERG-YAHLLYKMAEEFLST 205 (496)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~G-~~~l~~~l~~~~~~~ 205 (496)
+|+... ..........+........+...+..+ .+.... .......++++ .+.++.++.+.+.+
T Consensus 153 d~l~~~----g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~- 227 (485)
T COG3349 153 DWLKEK----GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPE- 227 (485)
T ss_pred HHHHHh----CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccc-
Confidence 555531 111111111111111111000000000 000000 11111222333 44567777777776
Q ss_pred CCCCccccceeeCceeEEEEEcCC-----ceEEEeCCCc---EEEcCEEEEecChHHHhcCCcccCCCC-c-HHHHHHHh
Q 010995 206 SDGKILDNRLKLNKVVRELQHSRN-----GVTVKTEDGC---VYEANYVILSASIGVLQSDLISFKPPL-P-KWKTEAIE 275 (496)
Q Consensus 206 ~~~~~~g~~i~~~~~V~~I~~~~~-----~v~V~~~~G~---~~~ad~VI~A~p~~~l~~~li~~~p~l-~-~~~~~~i~ 275 (496)
.|.+++++.+|+.|..+.. .+.+... +. ...++.++.+.....+.+. .|.. + ......+.
T Consensus 228 -----~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~----~ps~W~~~~~f~~ly 297 (485)
T COG3349 228 -----RGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRD----LPSEWPKWSNFDGLY 297 (485)
T ss_pred -----cCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhc----Ccccccccccccccc
Confidence 7999999999999987652 1223333 43 3456666666666666652 2221 1 22344566
Q ss_pred hCCCcceeEEEEEcCCCCCCCCCC-CceE----EeecCCCCccccceec----cccCCCC-cEEEEEeccccchhcccCC
Q 010995 276 KCDVMVYTKIFLKFPCKFWPCSPG-KEFF----IYAHERRGYYTFWQHM----ENAYPGS-NILVVTLTNGESKRVEAQP 345 (496)
Q Consensus 276 ~~~~~~~~~v~l~~~~~~w~~~~~-~~~~----~~~~~~~~~~~~~~~~----~~~~~~~-~vl~~~~~~~~a~~~~~~~ 345 (496)
.+...+..+++++|+...|..... ..++ .+..+.. ...++... ....++. ..+..... .+..|...+
T Consensus 298 ~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l-~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~ 374 (485)
T COG3349 298 GLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTL-GGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFES 374 (485)
T ss_pred cccccceeEEEEeecCccccccccchhhhhhccccccccC-Cceeeeccccchhhccccchhhhhhhhc--ccccccccc
Confidence 677888899999998654332111 1111 1221111 11222211 0011222 22222222 345677778
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchH
Q 010995 346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHG 425 (496)
Q Consensus 346 ~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~eg 425 (496)
++++.....+++..+++..........+.+= ..+....+||. ..++|...+|++|++++|||+...+.++|||
T Consensus 375 ~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~------~q~~~~~~pgs-~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~ 447 (485)
T COG3349 375 DEAIVATFEKELYELVPSLAEAKLKSSVLVN------QQSLYGLAPGS-YHYRPEQKTPIPNLLLAGDYTKQPYLGSMEG 447 (485)
T ss_pred hhhHHHHHHHHhhhcCCchhcccccccceec------cccccccCCCc-cccCCCCCCCccchhhccceeecCCcCccch
Confidence 9999999999999877533222222222111 22566678888 4788999999999999999998877789999
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 010995 426 GYLAGIDTGKAVVEKIRKD 444 (496)
Q Consensus 426 A~~SG~~aA~~il~~l~~~ 444 (496)
|..||++||+.|++.+...
T Consensus 448 A~~sGl~AA~~v~~~~~~~ 466 (485)
T COG3349 448 ATLSGLLAANAILDNLGHH 466 (485)
T ss_pred hhhhHHHHHHHHHHhhhhc
Confidence 9999999999999887643
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=3e-24 Score=218.45 Aligned_cols=239 Identities=20% Similarity=0.253 Sum_probs=138.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC-C
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG-L 83 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg-l 83 (496)
+++||||||||++||+||.+|+++|+ +|+||||++++||+++|.+.+|+.||.|++++.. .. ...+.++++ +
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~-~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~----~~--~~~~~~~l~~l 74 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGL-KVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLM----PD--PGPLFRELGNL 74 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCC-EEEEEEecCCCCcceEEEeccceEeccCcceeec----Cc--hHHHHHHhccC
Confidence 57899999999999999999999999 6999999999999999999999999999988866 22 225555666 5
Q ss_pred ccccccC--CCcceEEEcCCCcccCh-hHH---H-----------HHHHHHHHHHHHH----hcccc----c----cchh
Q 010995 84 RTCFSDY--TNARYNIYDRSGKIIPS-GVA---A-----------DSYKKAVESAIAN----LKNLE----A----TNSN 134 (496)
Q Consensus 84 ~~~~~~~--~~~~~~~~~~~g~~~~~-~~~---~-----------~~~~~~~~~~~~~----~~~~~----~----~~~~ 134 (496)
......+ ....+..+.++|..+.. ... . +.+..+.....+. ..... . ....
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (487)
T COG1233 75 DADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDT 154 (487)
T ss_pred cccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcccc
Confidence 4432111 12334455565554321 000 0 0111111111110 00000 0 0000
Q ss_pred HHHHHHhhhcCC---------CCCCChHHHHHHHHHhhccccccCC--cccc-cccCCcceeeeCcccHHHHHHHHHHhh
Q 010995 135 IGEVIKAATELP---------SSPKTPLELAIDFILHDFEMAEVEP--ISTY-VDFGEREFLVADERGYAHLLYKMAEEF 202 (496)
Q Consensus 135 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~G~~~l~~~l~~~~ 202 (496)
...+........ ....+..+..+.+...........+ ...+ ............+||++.|+++|++.+
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~ 234 (487)
T COG1233 155 PERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELA 234 (487)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHH
Confidence 111111000000 0000011111111100000000000 0111 112222344566899999999999999
Q ss_pred ccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHHHh
Q 010995 203 LSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGVLQ 256 (496)
Q Consensus 203 ~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~l~ 256 (496)
++ .|++|+++++|++|..++++ +++++.+|+.+++|.||+++.+....
T Consensus 235 ~~------~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~ 283 (487)
T COG1233 235 RE------HGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLA 283 (487)
T ss_pred HH------cCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhh
Confidence 98 79999999999999998875 66888888789999999999884433
No 31
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.90 E-value=9.9e-22 Score=178.89 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=163.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee----eCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK----FGGVSVELGAGWIAGVGGKESNPVWELAS 79 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~----~~g~~~d~G~~~~~~~~~~~~~~~~~l~~ 79 (496)
..+.+|+|||+|||||+|||.|+++. +|||+|+.+++||+.+|.. .+|..+|+|.+.... ..|+++..|++
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~rh--dVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~---~tYpnl~~Lf~ 80 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRRH--DVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNE---RTYPNLTRLFK 80 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhccc--ceEEEeccccccCccceeeccccCCceeecceeEEecC---CCcchHHHHHH
Confidence 45789999999999999999999884 7999999999999999985 246789999998887 68999999999
Q ss_pred hcCCccccccCCCcceEE-EcCCCcccCh-----hHH-------HHHHHHHHHHHHHHhc--c-----ccccchhHHHHH
Q 010995 80 KSGLRTCFSDYTNARYNI-YDRSGKIIPS-----GVA-------ADSYKKAVESAIANLK--N-----LEATNSNIGEVI 139 (496)
Q Consensus 80 ~lgl~~~~~~~~~~~~~~-~~~~g~~~~~-----~~~-------~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~ 139 (496)
++|.+......+ +.+ ++..|..+.. ++. ...+..++....++.. . ......++.+|+
T Consensus 81 ~iGv~t~as~Ms---f~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L 157 (447)
T COG2907 81 TIGVDTKASFMS---FSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYL 157 (447)
T ss_pred HcCCCCccccee---EEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHH
Confidence 999987653322 222 2222222221 111 1112222222211111 0 111122345555
Q ss_pred HhhhcCCCCCC-----ChHHHHHHHHHhhccccccCCcc---------cccccCCcceeeeCcccHHHHHHHHHHhhccC
Q 010995 140 KAATELPSSPK-----TPLELAIDFILHDFEMAEVEPIS---------TYVDFGEREFLVADERGYAHLLYKMAEEFLST 205 (496)
Q Consensus 140 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~ 205 (496)
.+.. .+. -...+....+.....-....+.. ......+........||...-+++|+..
T Consensus 158 ~~~~----f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~---- 229 (447)
T COG2907 158 KQRN----FGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAAD---- 229 (447)
T ss_pred HhcC----ccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhcc----
Confidence 4310 000 00001111111000000000000 0001122223334578999999999988
Q ss_pred CCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEE
Q 010995 206 SDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKI 285 (496)
Q Consensus 206 ~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v 285 (496)
.+++|.++++|..|..-.+++.|+..+|++-++|+||+|+.+.+...++ +.+-| +.++.+..+.|.....|
T Consensus 230 -----~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL---~e~sp-~e~qll~a~~Ys~n~aV 300 (447)
T COG2907 230 -----IRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL---DEPSP-EERQLLGALRYSANTAV 300 (447)
T ss_pred -----ccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc---CCCCH-HHHHHHHhhhhhhceeE
Confidence 4678999999999999999999888889889999999999999987732 22223 45668999999998877
Q ss_pred EEEcC
Q 010995 286 FLKFP 290 (496)
Q Consensus 286 ~l~~~ 290 (496)
.....
T Consensus 301 lhtd~ 305 (447)
T COG2907 301 LHTDA 305 (447)
T ss_pred Eeecc
Confidence 66543
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.78 E-value=8e-18 Score=158.57 Aligned_cols=245 Identities=17% Similarity=0.154 Sum_probs=137.9
Q ss_pred eeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHHhcCCcccC
Q 010995 185 VADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVLQSDLISFK 263 (496)
Q Consensus 185 ~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~ 263 (496)
.+..||++.+..++++.+++ .|++|.+++.|++|..+++++. |...||+++.++.||+++.+..+...++ -.
T Consensus 257 ~Yp~GG~Gavs~aia~~~~~------~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl-p~ 329 (561)
T KOG4254|consen 257 GYPRGGMGAVSFAIAEGAKR------AGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL-PG 329 (561)
T ss_pred cCCCCChhHHHHHHHHHHHh------ccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC-CC
Confidence 35689999999999999998 7999999999999999987765 9999999999999999988877763233 23
Q ss_pred CCCcHHHHHHHhhCCC-cceeE----EEEEcCCCCCCCCCCCceEEeec-C------------CCCc----ccccee---
Q 010995 264 PPLPKWKTEAIEKCDV-MVYTK----IFLKFPCKFWPCSPGKEFFIYAH-E------------RRGY----YTFWQH--- 318 (496)
Q Consensus 264 p~l~~~~~~~i~~~~~-~~~~~----v~l~~~~~~w~~~~~~~~~~~~~-~------------~~~~----~~~~~~--- 318 (496)
..||++. .++.+.+ .+..| .++..+..--...|..++.+... + ..+. ..++.+
T Consensus 330 e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS 407 (561)
T KOG4254|consen 330 EALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS 407 (561)
T ss_pred ccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence 3466653 3444432 22222 23332221100012222222111 0 0010 011111
Q ss_pred -cc--ccCCCCcEEEEEeccccchhcccCC-------cHHHHHHHHHHHHHhcCCCCCCCCeeEe-cccCCCCCC---Cc
Q 010995 319 -ME--NAYPGSNILVVTLTNGESKRVEAQP-------DEETLKEAMEVLQDMFGPDIPNATDILV-PRWWNNRFQ---RG 384 (496)
Q Consensus 319 -~~--~~~~~~~vl~~~~~~~~a~~~~~~~-------~ee~~~~~~~~L~~~~~~~~~~~~~~~~-~rw~~~~~~---~g 384 (496)
.+ -.+++.+++..+..... ..|++.. .++..+.+++.+.++++.-...++...+ +--.+.+|. +|
T Consensus 408 ~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~G 486 (561)
T KOG4254|consen 408 SLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGG 486 (561)
T ss_pred ccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCC
Confidence 11 13466777776654322 3455443 3567788888888777421112221111 111111111 34
Q ss_pred ccCCCCCCCCh--H-----HHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhc
Q 010995 385 SYSNYPIISDN--Q-----LVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443 (496)
Q Consensus 385 ~~~~~~~g~~~--~-----~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~ 443 (496)
.+...+.+... - .....++|+++||+||+.+.++ |.+-+|- |..+|...+.....
T Consensus 487 n~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 487 NIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred cccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhh
Confidence 43332222211 1 1223488999999999999873 3454443 88888887766543
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.76 E-value=7.5e-17 Score=161.81 Aligned_cols=71 Identities=25% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCCCCCeEEEeee--eCCcEEeecceEEecCCCCCCChHHHHH
Q 010995 5 SRSPVIIIGAGVSGISAGKILAEN----GIEDILILEASDRIGGRVRNEK--FGGVSVELGAGWIAGVGGKESNPVWELA 78 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~~~GGr~~t~~--~~g~~~d~G~~~~~~~~~~~~~~~~~l~ 78 (496)
.+.+|+|||||+|||+||++|++. |. +|+|||+++++||++.+.. .+|+.++.|.+. .. .+..+++++
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~-~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~----~y~~l~~ll 94 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGE-NITILEELDVPGGSLDGAGNPEKGYVARGGREM-EN----HFECLWDLF 94 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCC-cEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cc----hHHHHHHHH
Confidence 457999999999999999999995 67 7999999999999999854 578989888774 44 788999999
Q ss_pred Hhc
Q 010995 79 SKS 81 (496)
Q Consensus 79 ~~l 81 (496)
+++
T Consensus 95 ~~i 97 (576)
T PRK13977 95 RSI 97 (576)
T ss_pred Hhc
Confidence 876
No 34
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.72 E-value=1.7e-15 Score=147.35 Aligned_cols=223 Identities=20% Similarity=0.210 Sum_probs=131.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcE-EeecceEEecCCCCCCChHHHHHHhcC-C
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVS-VELGAGWIAGVGGKESNPVWELASKSG-L 83 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~-~d~G~~~~~~~~~~~~~~~~~l~~~lg-l 83 (496)
++||+|||||++||++|+.|++.|. +|+|+|+++++||++.+...++.. .+.|+|+++. ....+++++.++. .
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~-~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t----~~~~v~~~~~~~~~~ 75 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNK-RVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT----NNQYVWDYISPFFEL 75 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCCCceeeecCCCceEEeecceeEec----CcHHHHHHHHhhccc
Confidence 4699999999999999999999999 699999999999999997766655 4899999997 7788888888753 2
Q ss_pred ccccccCCCcceEEEcCCCcccChhHHHHHHHH---------HHHHHHHHhccccccc-hhHHHHH-------Hhh----
Q 010995 84 RTCFSDYTNARYNIYDRSGKIIPSGVAADSYKK---------AVESAIANLKNLEATN-SNIGEVI-------KAA---- 142 (496)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~-------~~~---- 142 (496)
. .+... . ....+|+.++.+...+.+.. +.+.+........... ..++++. +..
T Consensus 76 ~----~~~~~-~-~~~~~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~ 149 (377)
T TIGR00031 76 N----NYQHR-V-LALYNNLDLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQK 149 (377)
T ss_pred c----ceeEE-E-EEEECCeEEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 12211 1 22346666654332111111 1111111111000000 1111111 110
Q ss_pred hcCCCC----CCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeC
Q 010995 143 TELPSS----PKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLN 218 (496)
Q Consensus 143 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~ 218 (496)
...+.. ..++.++..++.. ..... +..-..+....+...+++|+..++++|.+. .+.+|++|
T Consensus 150 ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~----~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~---------~~i~v~l~ 215 (377)
T TIGR00031 150 VYKPYTVKQWGLPAEEIDPFVIG-RVPVV----LSEDSSYFPDRYQGLPKGGYTKLFEKMLDH---------PLIDVKLN 215 (377)
T ss_pred hccccCceeeCCChHHCCHHHeE-ecceE----ecCCCCcccccccccccccHHHHHHHHHhc---------CCCEEEeC
Confidence 001111 1235555554443 11111 111011223345556789999999999987 68899999
Q ss_pred ceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995 219 KVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS 257 (496)
Q Consensus 219 ~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~ 257 (496)
+.+..++.+++++.+.. + .+. +.||.|.|+..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~--~-~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 216 CHINLLKDKDSQLHFAN--K-AIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred Cccceeeccccceeecc--c-ccc-CcEEEecCchHHHh
Confidence 98888886555454432 2 333 88999999988743
No 35
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.71 E-value=2.9e-16 Score=156.38 Aligned_cols=228 Identities=18% Similarity=0.310 Sum_probs=136.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--------------------CcEEeecceEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--------------------GVSVELGAGWIA 64 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~ 64 (496)
+.+||||||+|++|+.+|..|+++|+ +|+++|++++.||+.+|.+.. .+.+|+.++.+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~Gk-kVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGK-KVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCC-EEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 47999999999999999999999999 699999999999999997432 244667777765
Q ss_pred cCCCCCCChHHHHHHhcCCccccccCCCcc-eEEEcCCCcc--cChhHHHH-------HH-HHHHHHHHHHhcccc----
Q 010995 65 GVGGKESNPVWELASKSGLRTCFSDYTNAR-YNIYDRSGKI--IPSGVAAD-------SY-KKAVESAIANLKNLE---- 129 (496)
Q Consensus 65 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~-~~~~~~~g~~--~~~~~~~~-------~~-~~~~~~~~~~~~~~~---- 129 (496)
. ...+..++.+.++.... ++.... ..++..+|+. +|...... ++ +..+..+.....+..
T Consensus 82 ~-----~G~lv~lL~~s~v~ryl-eF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~ 155 (443)
T PTZ00363 82 A-----SGELVKILLHTDVTRYL-EFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDP 155 (443)
T ss_pred c-----CChHHHHHhhcCcccee-eeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCCh
Confidence 4 46778888888887665 332221 2233245554 33222111 11 111111111111111
Q ss_pred -------ccchhHHHHHHhhhcCCCCCCChHHH---HHHHHHhh-cc-ccccCC-------cccccccCCcceeeeCccc
Q 010995 130 -------ATNSNIGEVIKAATELPSSPKTPLEL---AIDFILHD-FE-MAEVEP-------ISTYVDFGEREFLVADERG 190 (496)
Q Consensus 130 -------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~-------~~~~~~~~~~~~~~~~~~G 190 (496)
....++.+|++.+ ..+...... .+.....+ +. ...... ...+..++...+ .++.+|
T Consensus 156 ~~~~~~~~d~~T~~d~L~~~----~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~-~yp~gG 230 (443)
T PTZ00363 156 ETHKGLNLKTMTMAQLYKKF----GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPF-IYPLYG 230 (443)
T ss_pred hhhcccCcccCCHHHHHHHh----CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcc-eeeCCC
Confidence 1123456666541 111111111 11111000 00 000000 011123443333 445799
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCC-c-eEEEeCCCcEEEcCEEEEec
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN-G-VTVKTEDGCVYEANYVILSA 250 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~-~-v~V~~~~G~~~~ad~VI~A~ 250 (496)
++.|+++|++.+.. .|+++++|++|++|..+++ + +.|++.+|+++.||+||+..
T Consensus 231 ~g~L~qal~r~~a~------~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 231 LGGLPQAFSRLCAI------YGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred HHHHHHHHHHHHHH------cCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 99999999988776 7999999999999998764 3 45888899999999999854
No 36
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.67 E-value=8e-17 Score=116.53 Aligned_cols=68 Identities=34% Similarity=0.606 Sum_probs=60.5
Q ss_pred EECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhc
Q 010995 11 IIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS 81 (496)
Q Consensus 11 IIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~l 81 (496)
|||||+|||+||+.|+++|+ +|+|+|+++++||++.+...++..+|.|++++... ..++++++++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~--~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPP--DDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSSSSSGGGCEEEETTEEEETSS-SEEET--TSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCcccCcceeEEEECCEEEeeccEEEeCC--CCchHHHHHHcCC
Confidence 89999999999999999999 79999999999999999999999999999999872 1467889999875
No 37
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.55 E-value=3.3e-12 Score=127.89 Aligned_cols=166 Identities=18% Similarity=0.239 Sum_probs=103.0
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
|+...++||+|||||++||++|+.|+++|+ +|+|+|+.+.++-... + .+...+. -.+...+++++
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~~~~~~~~-----~----~~~r~~~-----l~~~~~~~l~~ 65 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGL-SVALVEGREPPRWQAD-----Q----PDLRVYA-----FAADNAALLDR 65 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCCCcccccC-----C----CCCEEEE-----ecHHHHHHHHH
Confidence 677788999999999999999999999999 6999999875421100 0 0111111 23456788899
Q ss_pred cCCccccccC--C-CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHH
Q 010995 81 SGLRTCFSDY--T-NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAI 157 (496)
Q Consensus 81 lgl~~~~~~~--~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (496)
+|+....... . -....+++.++... .. +. .
T Consensus 66 lGl~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~----~~------~---------- 98 (392)
T PRK08773 66 LGVWPAVRAARAQPYRRMRVWDAGGGGE---------------------------LG----FD------A---------- 98 (392)
T ss_pred CCchhhhhHhhCCcccEEEEEeCCCCce---------------------------EE----ec------h----------
Confidence 9986554211 0 00111222111100 00 00 0
Q ss_pred HHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCC
Q 010995 158 DFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTED 237 (496)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~ 237 (496)
. .. ......+.+ . ...+.+.|.+.+.+ .|++++++++|++|+.++++++|++.+
T Consensus 99 ---------~---~~----~~~~~~~~v--~--~~~l~~~L~~~~~~------~gv~i~~~~~v~~i~~~~~~v~v~~~~ 152 (392)
T PRK08773 99 ---------D---TL----GREQLGWIV--E--NDLLVDRLWAALHA------AGVQLHCPARVVALEQDADRVRLRLDD 152 (392)
T ss_pred ---------h---cc----CCCcCEEEE--E--hHHHHHHHHHHHHh------CCCEEEcCCeEEEEEecCCeEEEEECC
Confidence 0 00 000001111 1 24566666666655 689999999999999988889998888
Q ss_pred CcEEEcCEEEEecChHH
Q 010995 238 GCVYEANYVILSASIGV 254 (496)
Q Consensus 238 G~~~~ad~VI~A~p~~~ 254 (496)
|+++++|.||.|.....
T Consensus 153 g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 153 GRRLEAALAIAADGAAS 169 (392)
T ss_pred CCEEEeCEEEEecCCCc
Confidence 88899999999998754
No 38
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.54 E-value=4.1e-14 Score=133.48 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecC
Q 010995 189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251 (496)
Q Consensus 189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p 251 (496)
...+.+++.|.+++++ .|++|+++++|.+|++++.+..|.+.+|+++.||.+|+|+.
T Consensus 108 dkA~~Iv~~ll~~~~~------~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 108 DKASPIVDALLKELEA------LGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cchHHHHHHHHHHHHH------cCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 6788999999999998 89999999999999999988999999998999999999986
No 39
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.49 E-value=1.6e-11 Score=122.49 Aligned_cols=306 Identities=17% Similarity=0.197 Sum_probs=160.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC-
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL- 83 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl- 83 (496)
+.||+|||||++||++|..|+++|+ +|+|+|+. +.. .+.| ..+ .-.++..++++++|+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~~~~~-------------~~~~-r~~-----~l~~~~~~~L~~lG~~ 61 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL-DVTLLERAPREL-------------LERG-RGI-----ALSPNALRALERLGLW 61 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEccCcccc-------------ccCc-eee-----eecHhHHHHHHHcCCh
Confidence 6799999999999999999999999 79999997 111 0111 111 145678899999999
Q ss_pred ccccccCC-CcceEEEcCCCc-ccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995 84 RTCFSDYT-NARYNIYDRSGK-IIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL 161 (496)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (496)
+.....-. ......++.++. .+. +..
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~-------------- 89 (387)
T COG0654 62 DRLEALGVPPLHVMVVDDGGRRLLI--------------------------------------FDA-------------- 89 (387)
T ss_pred hhhhhccCCceeeEEEecCCceeEE--------------------------------------ecc--------------
Confidence 43321111 111111212221 000 000
Q ss_pred hhccccccCCcccccccC-CcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeC-CCc
Q 010995 162 HDFEMAEVEPISTYVDFG-EREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTE-DGC 239 (496)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~-~G~ 239 (496)
...+ ....+.. ....+.+.|.+.+.+. .+++++++++|+.++.+++.++|+.. +|+
T Consensus 90 --------------~~~~~~~~~~~~---~~~~l~~~L~~~~~~~-----~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~ 147 (387)
T COG0654 90 --------------AELGRGALGYVV---PRSDLLNALLEAARAL-----PNVTLRFGAEVEAVEQDGDGVTVTLSFDGE 147 (387)
T ss_pred --------------cccCCCcceEEe---EhHHHHHHHHHHHhhC-----CCcEEEcCceEEEEEEcCCceEEEEcCCCc
Confidence 0000 1111111 2556777777776652 44899999999999999999888887 999
Q ss_pred EEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcc-eeEEEEEcCCCCCCCCCCCceEEeecCCCCcccccee
Q 010995 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMV-YTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQH 318 (496)
Q Consensus 240 ~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~-~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 318 (496)
+++||.||-|=..+...+..+. .+.. ....|.. ...+.+..+ .+.. ...+..+.+. +.+.+..
T Consensus 148 ~~~a~llVgADG~~S~vR~~~~-~~~~--------~~~~y~~~~l~~~~~~~--~~~~--~~~~~~~~~~--~~~~~~p- 211 (387)
T COG0654 148 TLDADLLVGADGANSAVRRAAG-IAEF--------SGRDYGQTALVANVEPE--EPHE--GRAGERFTHA--GPFALLP- 211 (387)
T ss_pred EEecCEEEECCCCchHHHHhcC-CCCc--------cCCCCCceEEEEEeecC--CCCC--CeEEEEecCC--CceEEEe-
Confidence 9999999999887665552221 1111 1111222 122222222 1111 1111122221 1111111
Q ss_pred ccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHH
Q 010995 319 MENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLV 398 (496)
Q Consensus 319 ~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~ 398 (496)
..+....++.+.....+.....+++++. .+.|.+.++...+ ........+.. .|+. .. ...
T Consensus 212 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~-~~~~~~~~~~~------~~pl---~~--~~a 272 (387)
T COG0654 212 ---LPDNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGERDP-LGRVTLVSSRS------AFPL---SL--RVA 272 (387)
T ss_pred ---cCCCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCcccc-cceEEEccccc------cccc---cc--hhh
Confidence 1112233333333334555556666665 4556666654322 11122222211 2221 11 011
Q ss_pred HHHhCCCCcEEEccccccCcCC--c-cchHHHHHHHHHHHHHHHHHh
Q 010995 399 NSIRAPVAGIFFTGEHTSERFN--G-YVHGGYLAGIDTGKAVVEKIR 442 (496)
Q Consensus 399 ~~~~~p~~~l~~aGd~~~~~~~--g-~~egA~~SG~~aA~~il~~l~ 442 (496)
..... ++++++||+.+..+| | +++-|+.-+...|..+.+...
T Consensus 273 ~~~~~--~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 273 ERYRR--GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred hheec--CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 11111 789999999987554 2 667777777777777766655
No 40
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.47 E-value=3.2e-11 Score=120.57 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=97.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF 87 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~ 87 (496)
||+|||||++||++|+.|+++|+ +|+|+|++..++-+. .+ ++..+.. -.++...+++++|+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~~~~~~-----~~--~~~~~~~-------l~~~~~~~l~~lGl~~~~ 65 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL-KIALIEATPAEAAAT-----PG--FDNRVSA-------LSAASIRLLEKLGVWDKI 65 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCccccCC-----CC--CCcceee-------cCHHHHHHHHHCCchhhh
Confidence 79999999999999999999999 799999987654100 00 0101111 234567788899986554
Q ss_pred cc-CC--CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhc
Q 010995 88 SD-YT--NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDF 164 (496)
Q Consensus 88 ~~-~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (496)
.. .. .....++..++... . .+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~---------------------------~---~~~~~----------------------- 92 (385)
T TIGR01988 66 EPDRAQPIRDIHVSDGGSFGA---------------------------L---HFDAD----------------------- 92 (385)
T ss_pred hhhcCCCceEEEEEeCCCCce---------------------------E---Eechh-----------------------
Confidence 22 11 11122222222110 0 00000
Q ss_pred cccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCceEEEeCCCcEEEc
Q 010995 165 EMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNGVTVKTEDGCVYEA 243 (496)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~a 243 (496)
.. ......+.+ .-..+.+.|.+.+.+ .| ++|+++++|++|+.+++++.|++.+|+++++
T Consensus 93 ------~~----~~~~~~~~i----~r~~l~~~L~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~ 152 (385)
T TIGR01988 93 ------EI----GLEALGYVV----ENRVLQQALWERLQE------YPNVTLLCPARVVELPRHSDHVELTLDDGQQLRA 152 (385)
T ss_pred ------hc----CCCccEEEE----EcHHHHHHHHHHHHh------CCCcEEecCCeEEEEEecCCeeEEEECCCCEEEe
Confidence 00 000001111 123466666666654 45 8999999999999988889998889988999
Q ss_pred CEEEEecChHHH
Q 010995 244 NYVILSASIGVL 255 (496)
Q Consensus 244 d~VI~A~p~~~l 255 (496)
|.||.|.+....
T Consensus 153 ~~vi~adG~~S~ 164 (385)
T TIGR01988 153 RLLVGADGANSK 164 (385)
T ss_pred eEEEEeCCCCCH
Confidence 999999876543
No 41
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.46 E-value=8.3e-11 Score=117.37 Aligned_cols=56 Identities=25% Similarity=0.235 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
...+.+.|.+.+.. .|++++.+++|++|+.+++++.|.+.+| ++.+|.||+|+...
T Consensus 144 p~~~~~~l~~~~~~------~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 144 AEKALRALQELAEA------HGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHH------cCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 34566666666555 6999999999999999888888888776 89999999999864
No 42
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.46 E-value=1.7e-11 Score=122.41 Aligned_cols=43 Identities=37% Similarity=0.594 Sum_probs=39.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
.++||+|||||+||++||+.|+++|+ +|+|||+++.+|-+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~-~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCC-eEEEEecCCCCCCCccc
Confidence 47999999999999999999999999 79999999999876554
No 43
>PRK06847 hypothetical protein; Provisional
Probab=99.45 E-value=2.5e-11 Score=120.84 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=98.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR 84 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~ 84 (496)
++.||+|||||++||++|..|++.|+ +|+|+|+++.+.. .|.. +. ..++..+.++++|+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~~~~~-------------~g~g-~~-----l~~~~~~~l~~~gl~ 62 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDPEWRV-------------YGAG-IT-----LQGNALRALRELGVL 62 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCcc-------------CCce-ee-----ecHHHHHHHHHcCCH
Confidence 47899999999999999999999999 6999999875421 1111 11 234556778888875
Q ss_pred cccccC--CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995 85 TCFSDY--TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH 162 (496)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (496)
...... ......+++.+|..+.. .+ ...+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~g~~~~~--------------------~~-----~~~~~~---------------------- 95 (375)
T PRK06847 63 DECLEAGFGFDGVDLFDPDGTLLAE--------------------LP-----TPRLAG---------------------- 95 (375)
T ss_pred HHHHHhCCCccceEEECCCCCEEEe--------------------cC-----cccccc----------------------
Confidence 433111 11112233333332100 00 000000
Q ss_pred hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEE
Q 010995 163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYE 242 (496)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ 242 (496)
..+... .. . .-..+.+.|.+.+.+ .|++|+++++|++|+.+++++.|.+.+|+++.
T Consensus 96 -------------~~~~~~-~~-i---~r~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 151 (375)
T PRK06847 96 -------------DDLPGG-GG-I---MRPALARILADAARA------AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGR 151 (375)
T ss_pred -------------cCCCCc-cc-C---cHHHHHHHHHHHHHH------hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEE
Confidence 000000 00 0 113455555555544 68899999999999988888888888898999
Q ss_pred cCEEEEecChHHH
Q 010995 243 ANYVILSASIGVL 255 (496)
Q Consensus 243 ad~VI~A~p~~~l 255 (496)
+|.||.|.+....
T Consensus 152 ad~vI~AdG~~s~ 164 (375)
T PRK06847 152 YDLVVGADGLYSK 164 (375)
T ss_pred cCEEEECcCCCcc
Confidence 9999999987543
No 44
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.45 E-value=3e-13 Score=133.51 Aligned_cols=57 Identities=28% Similarity=0.457 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecC
Q 010995 189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSAS 251 (496)
Q Consensus 189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p 251 (496)
.-...+++.|.+.+++ .|++|+++++|++|+.++++ +.|.+.++.++.||+||+|+.
T Consensus 106 ~~a~~Vv~~L~~~l~~------~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 106 DKASSVVDALLEELKR------LGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp --HHHHHHHHHHHHHH------HT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred CcHHHHHHHHHHHHHH------cCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence 4578899999888887 79999999999999998877 778886667999999999976
No 45
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.44 E-value=3.2e-11 Score=120.68 Aligned_cols=160 Identities=18% Similarity=0.256 Sum_probs=97.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL 83 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl 83 (496)
+..+||+|||||++||++|+.|+++|+ +|+|+|+.+.++. ..+.. ...+-.++++++|+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~~~~~-------------~r~~~-------l~~~s~~~l~~lgl 63 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEPPYAD-------------LRTTA-------LLGPSIRFLERLGL 63 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCCCCCC-------------cchhh-------CcHHHHHHHHHhCc
Confidence 356899999999999999999999999 6999999875410 00001 12245678888887
Q ss_pred ccccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995 84 RTCFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL 161 (496)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (496)
......... ....+++.+|..+.... .. +..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------------~~------~~~-------------------- 96 (388)
T PRK07494 64 WARLAPHAAPLQSMRIVDATGRLIRAPE---------------------VR------FRA-------------------- 96 (388)
T ss_pred hhhhHhhcceeeEEEEEeCCCCCCCCce---------------------EE------EcH--------------------
Confidence 654321111 11223333332210000 00 000
Q ss_pred hhccccccCCcccccccCCcc-eeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcE
Q 010995 162 HDFEMAEVEPISTYVDFGERE-FLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV 240 (496)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~ 240 (496)
...+... .+.. . ...+.+.|.+.+.+ .++..+++++|++++.++++++|++.+|++
T Consensus 97 --------------~~~~~~~~g~~i-~--~~~l~~~L~~~~~~------~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~ 153 (388)
T PRK07494 97 --------------AEIGEDAFGYNI-P--NWLLNRALEARVAE------LPNITRFGDEAESVRPREDEVTVTLADGTT 153 (388)
T ss_pred --------------HhcCCCccEEEe-E--hHHHHHHHHHHHhc------CCCcEEECCeeEEEEEcCCeEEEEECCCCE
Confidence 0000000 1111 1 23466666666554 344448899999999998999999888889
Q ss_pred EEcCEEEEecChHH
Q 010995 241 YEANYVILSASIGV 254 (496)
Q Consensus 241 ~~ad~VI~A~p~~~ 254 (496)
++||.||.|.....
T Consensus 154 ~~a~~vI~AdG~~S 167 (388)
T PRK07494 154 LSARLVVGADGRNS 167 (388)
T ss_pred EEEeEEEEecCCCc
Confidence 99999999988754
No 46
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.44 E-value=2.6e-11 Score=122.23 Aligned_cols=43 Identities=33% Similarity=0.611 Sum_probs=38.2
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
|++ .++||+|||||+||++||+.|+++|+ +|+|+|+.+.+|..
T Consensus 1 m~~-~~~DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~~~g~k 43 (428)
T PRK10157 1 MSE-DIFDAIIVGAGLAGSVAALVLAREGA-QVLVIERGNSAGAK 43 (428)
T ss_pred CCc-ccCcEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCCCCCCc
Confidence 543 57999999999999999999999999 69999999887653
No 47
>PRK09126 hypothetical protein; Provisional
Probab=99.44 E-value=5.2e-11 Score=119.31 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=39.9
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVL 255 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l 255 (496)
.|++|+++++|++++.+++.+.|++.+|++++||.||.|.+....
T Consensus 124 ~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 589999999999999888888888888889999999999987543
No 48
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.44 E-value=6.8e-13 Score=131.09 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVL 255 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l 255 (496)
...+++.|.+.+++ .|++|+++++|++|..++++|+ |.+.+|+ +.||+||+|+.+...
T Consensus 146 ~~~l~~~l~~~~~~------~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 146 PRRLIQALAAEAQR------AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHHHHHHHHHHHH------TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred ccchhhhhHHHHHH------hhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence 78899999988877 7999999999999999999998 9999985 999999999987543
No 49
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.44 E-value=7.8e-11 Score=118.98 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=96.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL 83 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl 83 (496)
+..+||+|||||++||++|..|+++|+ +|+|+|+++...-. ..|... . -..+..++++++|+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~~-----------~~g~~~-~-----l~~~~~~~L~~lGl 77 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPAEAAA-----------AKGQAY-A-----LSLLSARIFEGIGV 77 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCccccC-----------CCCcEE-E-----echHHHHHHHHCCh
Confidence 346899999999999999999999999 79999998754210 011111 1 22356788889998
Q ss_pred ccccccCCCc--ceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995 84 RTCFSDYTNA--RYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL 161 (496)
Q Consensus 84 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (496)
.......... ...+++.++... . .+..
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~---------------------------~---~~~~--------------------- 106 (415)
T PRK07364 78 WEKILPQIGKFRQIRLSDADYPGV---------------------------V---KFQP--------------------- 106 (415)
T ss_pred hhhhHhhcCCccEEEEEeCCCCce---------------------------e---eecc---------------------
Confidence 6554221110 011111111100 0 0000
Q ss_pred hhccccccCCcccccccCC-cceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCC-C-
Q 010995 162 HDFEMAEVEPISTYVDFGE-REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTED-G- 238 (496)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~-G- 238 (496)
..... ...+... ...+.+.|.+.+.+. .|++++++++|++|+.+++++.|++.+ +
T Consensus 107 --------------~~~~~~~~~~~~~---~~~l~~~L~~~~~~~-----~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~ 164 (415)
T PRK07364 107 --------------TDLGTEALGYVGE---HQVLLEALQEFLQSC-----PNITWLCPAEVVSVEYQQDAATVTLEIEGK 164 (415)
T ss_pred --------------ccCCCCccEEEEe---cHHHHHHHHHHHhcC-----CCcEEEcCCeeEEEEecCCeeEEEEccCCc
Confidence 00000 0011111 124556666655442 478999999999999888888777653 2
Q ss_pred -cEEEcCEEEEecChHHHh
Q 010995 239 -CVYEANYVILSASIGVLQ 256 (496)
Q Consensus 239 -~~~~ad~VI~A~p~~~l~ 256 (496)
.+++||.||.|.......
T Consensus 165 ~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 165 QQTLQSKLVVAADGARSPI 183 (415)
T ss_pred ceEEeeeEEEEeCCCCchh
Confidence 369999999998865543
No 50
>PRK10015 oxidoreductase; Provisional
Probab=99.43 E-value=1.2e-10 Score=117.35 Aligned_cols=42 Identities=36% Similarity=0.692 Sum_probs=37.0
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
|++ .++||+|||||+||++||+.|+++|+ +|+|+|+.+.+|-
T Consensus 1 m~~-~~~DViIVGgGpAG~~aA~~LA~~G~-~VlliEr~~~~g~ 42 (429)
T PRK10015 1 MSD-DKFDAIVVGAGVAGSVAALVMARAGL-DVLVIERGDSAGC 42 (429)
T ss_pred CCc-cccCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCc
Confidence 543 56999999999999999999999999 6999999887653
No 51
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.42 E-value=5.3e-11 Score=119.70 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=100.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
.+||+|||||++||++|+.|+++|+ +|+|+|+.+..++...... .. ...+ . . -.++..++++++|+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~~~~~~~~~--~~-~~r~---~-~----l~~~~~~~L~~lGl~~ 69 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGPLSVKPFDPQA--PF-EPRV---S-A----LSAASQRILERLGAWD 69 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCCccccccccCC--CC-Cccc---h-h----hhHHHHHHHHHCChhh
Confidence 5799999999999999999999999 7999999864321111000 00 0001 0 1 3456778999999865
Q ss_pred cccc--C-CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995 86 CFSD--Y-TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH 162 (496)
Q Consensus 86 ~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (496)
.... . ......+++.+|... . .+..
T Consensus 70 ~l~~~~~~~~~~~~~~~~~~~~~---------------------------~----------~~~~--------------- 97 (405)
T PRK05714 70 GIAARRASPYSEMQVWDGSGTGQ---------------------------I----------HFSA--------------- 97 (405)
T ss_pred hhhHhhCccceeEEEEcCCCCce---------------------------E----------Eecc---------------
Confidence 4321 0 011112222222100 0 0000
Q ss_pred hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEE
Q 010995 163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYE 242 (496)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ 242 (496)
. .. ......+.+ . ...+.+.|.+.+.+ .|++|+++++|++|+.+++++.|++.+|++++
T Consensus 98 ------~-~~----~~~~~g~~i--~--~~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ 156 (405)
T PRK05714 98 ------A-SV----HAEVLGHIV--E--NRVVQDALLERLHD------SDIGLLANARLEQMRRSGDDWLLTLADGRQLR 156 (405)
T ss_pred ------c-cc----CCCccEEEE--E--hHHHHHHHHHHHhc------CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence 0 00 000000111 1 23456666666655 68899999999999998888999888888899
Q ss_pred cCEEEEecChHHHhc
Q 010995 243 ANYVILSASIGVLQS 257 (496)
Q Consensus 243 ad~VI~A~p~~~l~~ 257 (496)
||.||.|.......+
T Consensus 157 a~~vVgAdG~~S~vR 171 (405)
T PRK05714 157 APLVVAADGANSAVR 171 (405)
T ss_pred eCEEEEecCCCchhH
Confidence 999999998755444
No 52
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.40 E-value=8.9e-11 Score=117.20 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
..+.+.|.+.+.+. .|++++++++|++|..++++++|++.+|+++.||.||.|.+...
T Consensus 105 ~~l~~~L~~~~~~~-----~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALL-----TNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhC-----CCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 45666666665541 38999999999999988888999888888899999999998764
No 53
>PRK06184 hypothetical protein; Provisional
Probab=99.40 E-value=1.7e-10 Score=119.07 Aligned_cols=165 Identities=17% Similarity=0.227 Sum_probs=98.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR 84 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~ 84 (496)
+++||+|||||++||++|..|+++|+ +|+|+|+.+.+.-..+ +.. -.++..++++++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~~~~~~~r------------a~~-------l~~~~~e~l~~lGl~ 61 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKAPEPFPGSR------------GKG-------IQPRTQEVFDDLGVL 61 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCcCcc------------cee-------ecHHHHHHHHHcCcH
Confidence 46899999999999999999999999 6999999875421000 111 235678899999987
Q ss_pred cccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995 85 TCFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH 162 (496)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (496)
........ ....++..++..... .+... ....
T Consensus 62 ~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~---~~~~-------------- 95 (502)
T PRK06184 62 DRVVAAGGLYPPMRIYRDDGSVAES-----------------------------DMFAH---LEPT-------------- 95 (502)
T ss_pred HHHHhcCccccceeEEeCCceEEEe-----------------------------ecccc---ccCC--------------
Confidence 55422110 011122222221000 00000 0000
Q ss_pred hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEe---CCCc
Q 010995 163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT---EDGC 239 (496)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~G~ 239 (496)
.. ..+. ..+...+ ..+-+.|.+.+.+ .|++|+++++|++|+.++++|+++. .+++
T Consensus 96 --------~~---~~~~--~~~~i~q---~~le~~L~~~l~~------~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~ 153 (502)
T PRK06184 96 --------PD---EPYP--LPLMVPQ---WRTERILRERLAE------LGHRVEFGCELVGFEQDADGVTARVAGPAGEE 153 (502)
T ss_pred --------CC---CCCC--cceecCH---HHHHHHHHHHHHH------CCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE
Confidence 00 0000 0011111 2233444444444 5899999999999999888888765 5567
Q ss_pred EEEcCEEEEecChHHHhc
Q 010995 240 VYEANYVILSASIGVLQS 257 (496)
Q Consensus 240 ~~~ad~VI~A~p~~~l~~ 257 (496)
+++||+||.|.......+
T Consensus 154 ~i~a~~vVgADG~~S~vR 171 (502)
T PRK06184 154 TVRARYLVGADGGRSFVR 171 (502)
T ss_pred EEEeCEEEECCCCchHHH
Confidence 899999999998876544
No 54
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.39 E-value=5.9e-12 Score=108.61 Aligned_cols=68 Identities=31% Similarity=0.425 Sum_probs=53.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
..||+|||||+|||+|||+|+++|. +|+|+|++-.+||-+. .|++.|+.+. -..+...+++++|++.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ls~GGG~w----------~GGmlf~~iV--v~~~a~~iL~e~gI~y 96 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLSFGGGIW----------GGGMLFNKIV--VREEADEILDEFGIRY 96 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCc-eEEEEEeecccCCccc----------ccccccceee--ecchHHHHHHHhCCcc
Confidence 4699999999999999999999999 6999999999999665 3555555422 3456667788888753
Q ss_pred c
Q 010995 86 C 86 (496)
Q Consensus 86 ~ 86 (496)
.
T Consensus 97 e 97 (262)
T COG1635 97 E 97 (262)
T ss_pred e
Confidence 3
No 55
>PRK07045 putative monooxygenase; Reviewed
Probab=99.39 E-value=1.6e-10 Score=115.63 Aligned_cols=160 Identities=15% Similarity=0.236 Sum_probs=97.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR 84 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~ 84 (496)
.++||+|||||++||+||..|+++|+ +|+|+|+.+.+- .. .|+..+ .++..++++++|+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~~~~------~~------~~~~~l-------~~~~~~~L~~lGl~ 63 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGH-SVTVVERAARNR------AQ------NGADLL-------KPSGIGVVRAMGLL 63 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCCccc------CC------Cccccc-------CccHHHHHHHcCCH
Confidence 56899999999999999999999999 699999987541 00 012222 23456688899986
Q ss_pred cccccCCC---cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995 85 TCFSDYTN---ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL 161 (496)
Q Consensus 85 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (496)
........ ....++ .+|..+.. +..
T Consensus 64 ~~~~~~~~~~~~~~~~~-~~g~~~~~-------------------------------------~~~-------------- 91 (388)
T PRK07045 64 DDVFAAGGLRRDAMRLY-HDKELIAS-------------------------------------LDY-------------- 91 (388)
T ss_pred HHHHhcccccccceEEe-cCCcEEEE-------------------------------------ecC--------------
Confidence 55421110 001111 12221000 000
Q ss_pred hhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc--eEEEeCCCc
Q 010995 162 HDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG--VTVKTEDGC 239 (496)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~G~ 239 (496)
.......+..... -..|.+.|.+.+... .|++++++++|++|+.++++ +.|++.+|+
T Consensus 92 --------------~~~~~~g~~~~i~--r~~l~~~L~~~~~~~-----~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~ 150 (388)
T PRK07045 92 --------------RSASALGYFILIP--CEQLRRLLLAKLDGL-----PNVRLRFETSIERIERDADGTVTSVTLSDGE 150 (388)
T ss_pred --------------CccccCCceEEcc--HHHHHHHHHHHHhcC-----CCeeEEeCCEEEEEEECCCCcEEEEEeCCCC
Confidence 0000001111111 234555566555332 58899999999999987665 358888888
Q ss_pred EEEcCEEEEecChHHHhc
Q 010995 240 VYEANYVILSASIGVLQS 257 (496)
Q Consensus 240 ~~~ad~VI~A~p~~~l~~ 257 (496)
++.+|.||.|-+.....+
T Consensus 151 ~~~~~~vIgADG~~S~vR 168 (388)
T PRK07045 151 RVAPTVLVGADGARSMIR 168 (388)
T ss_pred EEECCEEEECCCCChHHH
Confidence 999999999998766544
No 56
>PRK08013 oxidoreductase; Provisional
Probab=99.39 E-value=1.9e-10 Score=115.30 Aligned_cols=166 Identities=13% Similarity=0.166 Sum_probs=99.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
.+||+|||||++||++|..|+++|+ +|+|+|+++.+.- ..+...+.-+.. -.+...++++++|+..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~~~~------~~g~~~~~r~~~-------l~~~s~~~L~~lGl~~ 68 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVPEPL------AADAPPALRVSA-------INAASEKLLTRLGVWQ 68 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCCccc------ccCCCCCceeee-------cchhHHHHHHHcCCch
Confidence 5899999999999999999999999 6999999875321 001000111111 2345788999999865
Q ss_pred ccccC---CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995 86 CFSDY---TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH 162 (496)
Q Consensus 86 ~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (496)
..... ......+++.+... ... +..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~----~~~--------------------- 96 (400)
T PRK08013 69 DILARRASCYHGMEVWDKDSFG---------------------------RIA----FDD--------------------- 96 (400)
T ss_pred hhhhhcCccccEEEEEeCCCCc---------------------------eEE----Ecc---------------------
Confidence 54211 00111122111000 000 000
Q ss_pred hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEE
Q 010995 163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYE 242 (496)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ 242 (496)
.. .......+.+ . -..|.+.|.+.+.+. .|++++++++|++|+.+++++.|+..+|++++
T Consensus 97 -------~~----~~~~~~~~~i-~---r~~l~~~L~~~~~~~-----~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 156 (400)
T PRK08013 97 -------QS----MGYSHLGHII-E---NSVIHYALWQKAQQS-----SDITLLAPAELQQVAWGENEAFLTLKDGSMLT 156 (400)
T ss_pred -------cc----cCCCccEEEE-E---hHHHHHHHHHHHhcC-----CCcEEEcCCeeEEEEecCCeEEEEEcCCCEEE
Confidence 00 0000001111 1 223555555554432 47899999999999998888999888898999
Q ss_pred cCEEEEecChHHHhc
Q 010995 243 ANYVILSASIGVLQS 257 (496)
Q Consensus 243 ad~VI~A~p~~~l~~ 257 (496)
||.||-|-..+...+
T Consensus 157 a~lvVgADG~~S~vR 171 (400)
T PRK08013 157 ARLVVGADGANSWLR 171 (400)
T ss_pred eeEEEEeCCCCcHHH
Confidence 999999988765544
No 57
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.39 E-value=1.6e-10 Score=116.25 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
..+.+.|.+.+.+ .|++++++++|++|+.+++++.|++.+|++++||.||.|.+...
T Consensus 111 ~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 111 RVLINALRKRAEA------LGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 4566666666554 68999999999999998888989888888899999999987643
No 58
>PRK07236 hypothetical protein; Provisional
Probab=99.38 E-value=1.3e-11 Score=123.32 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=101.6
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
|+..+..+|+|||||++||++|..|+++|+ +|+|+|+++..- . ..|.. +. ..++..+++++
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~------~------~~g~g-i~-----l~~~~~~~l~~ 61 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSPTEL------D------GRGAG-IV-----LQPELLRALAE 61 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCc------C------CCCce-eE-----eCHHHHHHHHH
Confidence 677788999999999999999999999999 699999986420 0 01111 11 23468889999
Q ss_pred cCCccccccCC--CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHH
Q 010995 81 SGLRTCFSDYT--NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAID 158 (496)
Q Consensus 81 lgl~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (496)
+|+.... ... .....+++.+|..+..
T Consensus 62 lg~~~~~-~~~~~~~~~~~~~~~g~~~~~--------------------------------------------------- 89 (386)
T PRK07236 62 AGVALPA-DIGVPSRERIYLDRDGRVVQR--------------------------------------------------- 89 (386)
T ss_pred cCCCccc-ccccCccceEEEeCCCCEeec---------------------------------------------------
Confidence 9986432 110 0011122222221000
Q ss_pred HHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC
Q 010995 159 FILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG 238 (496)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G 238 (496)
..... . ..+...+.+.|.+.+ .+.+|+++++|++|+.++++|+|++.+|
T Consensus 90 -----------------~~~~~--~----~~~~~~l~~~L~~~~--------~~~~i~~~~~v~~i~~~~~~v~v~~~~g 138 (386)
T PRK07236 90 -----------------RPMPQ--T----QTSWNVLYRALRAAF--------PAERYHLGETLVGFEQDGDRVTARFADG 138 (386)
T ss_pred -----------------cCCCc--c----ccCHHHHHHHHHHhC--------CCcEEEcCCEEEEEEecCCeEEEEECCC
Confidence 00000 0 012445666666654 3567999999999999888899999999
Q ss_pred cEEEcCEEEEecChHHHhc
Q 010995 239 CVYEANYVILSASIGVLQS 257 (496)
Q Consensus 239 ~~~~ad~VI~A~p~~~l~~ 257 (496)
++++||.||.|-..+...+
T Consensus 139 ~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 139 RRETADLLVGADGGRSTVR 157 (386)
T ss_pred CEEEeCEEEECCCCCchHH
Confidence 9999999999977655443
No 59
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.38 E-value=8.1e-12 Score=124.95 Aligned_cols=57 Identities=32% Similarity=0.411 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
...+.+.|.+.+.+ .|++++++++|++|+.+++++.|.+.+| ++.||.||+|++...
T Consensus 148 ~~~l~~aL~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQA------RGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHh------CCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 57788888888776 7999999999999998888888888777 899999999998753
No 60
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.38 E-value=2.5e-10 Score=114.37 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=45.5
Q ss_pred HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHh
Q 010995 194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQ 256 (496)
Q Consensus 194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~ 256 (496)
+.+.|.+.+.+. .|++++++++|+++..+++++.|++.+|++++||.||.|.......
T Consensus 114 l~~~L~~~~~~~-----~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 114 LQLALWQALEAH-----PNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHcC-----CCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchh
Confidence 444555544431 4889999999999998888888888888899999999999875543
No 61
>PRK07588 hypothetical protein; Provisional
Probab=99.37 E-value=3.1e-10 Score=113.58 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=97.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC 86 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~ 86 (496)
.||+|||||++||++|..|+++|+ +|+|+|+.+... .. | ..+. ..++-.++++++|+...
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~-~v~v~E~~~~~~-------~~------g-~~~~-----l~~~~~~~l~~lGl~~~ 60 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH-EPTLIERAPELR-------TG------G-YMVD-----FWGVGYEVAKRMGITDQ 60 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC-ceEEEeCCCCcc-------CC------C-eEEe-----ccCcHHHHHHHcCCHHH
Confidence 379999999999999999999999 699999976431 00 1 1111 22345678888998654
Q ss_pred cccCC--CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhc
Q 010995 87 FSDYT--NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDF 164 (496)
Q Consensus 87 ~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (496)
..... -....+++.+|..+.. .....+.
T Consensus 61 l~~~~~~~~~~~~~~~~g~~~~~-------------------------~~~~~~~------------------------- 90 (391)
T PRK07588 61 LREAGYQIEHVRSVDPTGRRKAD-------------------------LNVDSFR------------------------- 90 (391)
T ss_pred HHhccCCccceEEEcCCCCEEEE-------------------------ecHHHcc-------------------------
Confidence 32111 1112233333332100 0000000
Q ss_pred cccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcC
Q 010995 165 EMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEAN 244 (496)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad 244 (496)
..++.. ++... -..|.+.|.+.+. .|++|+++++|++|+.++++|+|++.+|+++++|
T Consensus 91 -----------~~~g~~-~~~i~---r~~l~~~L~~~~~-------~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d 148 (391)
T PRK07588 91 -----------RMVGDD-FTSLP---RGDLAAAIYTAID-------GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFD 148 (391)
T ss_pred -----------ccCCCc-eEEEE---HHHHHHHHHHhhh-------cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeC
Confidence 001111 11111 2344445544432 4689999999999999989999999999889999
Q ss_pred EEEEecChHHHhc
Q 010995 245 YVILSASIGVLQS 257 (496)
Q Consensus 245 ~VI~A~p~~~l~~ 257 (496)
.||.|-+.....+
T Consensus 149 ~vIgADG~~S~vR 161 (391)
T PRK07588 149 LVIGADGLHSHVR 161 (391)
T ss_pred EEEECCCCCccch
Confidence 9999998765544
No 62
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.36 E-value=2.5e-10 Score=114.81 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=45.5
Q ss_pred HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHH
Q 010995 194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVL 255 (496)
Q Consensus 194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l 255 (496)
+.+.|.+.+.+. .|++|+++++|++|..+++.+.|++.+|++++||.||.|-..+..
T Consensus 113 l~~~L~~~~~~~-----~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 113 IQLALLEQVQKQ-----DNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHHHhcC-----CCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 444555554432 478999999999999988888899889989999999999987543
No 63
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.36 E-value=2.6e-10 Score=113.76 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=41.7
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS 257 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~ 257 (496)
.|++++++++|++++.++++++|++.+|.++++|.||.|...+...+
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 57899999999999999888999999999999999999998765544
No 64
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.36 E-value=5.5e-10 Score=107.23 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCC-CcEEEcCEEEEecChHH
Q 010995 194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTED-GCVYEANYVILSASIGV 254 (496)
Q Consensus 194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VI~A~p~~~ 254 (496)
+.+.|.+.+.+ .|++++++++|+++..+++++.+...+ +.+++||.||.|.+...
T Consensus 93 l~~~l~~~~~~------~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 93 FDEQLAERAQE------AGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHH------cCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 44444444444 689999999999999888887765443 45899999999998754
No 65
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.35 E-value=3e-10 Score=113.62 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 192 AHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
..+.+.|.+.+.+ .| ++++ +++|++|..+++++.|++.+|.++.||.||.|.....
T Consensus 111 ~~l~~~L~~~~~~------~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 111 SLIERALWAALRF------QPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHHh------CCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 3455666666554 45 7888 9999999988888889888888899999999998753
No 66
>PRK06185 hypothetical protein; Provisional
Probab=99.35 E-value=5.2e-10 Score=112.69 Aligned_cols=67 Identities=25% Similarity=0.431 Sum_probs=50.2
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
|+....+||+|||||++||++|..|+++|+ +|+|+|+.+... + +..+.. -.....+++++
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~~~~------~------~~r~~~-------l~~~s~~~L~~ 60 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHADFL------R------DFRGDT-------VHPSTLELMDE 60 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCccC------c------cccCce-------eChhHHHHHHH
Confidence 777788999999999999999999999999 699999975321 0 000111 23346788999
Q ss_pred cCCcccc
Q 010995 81 SGLRTCF 87 (496)
Q Consensus 81 lgl~~~~ 87 (496)
+|+....
T Consensus 61 lG~~~~~ 67 (407)
T PRK06185 61 LGLLERF 67 (407)
T ss_pred cCChhHH
Confidence 9986543
No 67
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.35 E-value=4.7e-10 Score=112.23 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=95.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC--CeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI--GGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL 83 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~--GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl 83 (496)
+.||+|||||++||++|..|+++|+ +|+|+|+++.. .+. .++..+. ++..++++++|+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~~~~~~~~------------~~a~~l~-------~~~~~~l~~lGl 61 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRSREYVEGR------------IRAGVLE-------QGTVDLLREAGV 61 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCCccccccc------------cceeEEC-------HhHHHHHHHcCC
Confidence 6799999999999999999999999 69999998742 111 1222232 356789999998
Q ss_pred ccccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995 84 RTCFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL 161 (496)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (496)
......... ....++ .+|..... .+..
T Consensus 62 ~~~l~~~~~~~~~~~~~-~~g~~~~~------------------------------------~~~~-------------- 90 (392)
T PRK08243 62 GERMDREGLVHDGIELR-FDGRRHRI------------------------------------DLTE-------------- 90 (392)
T ss_pred hHHHHhcCCccCcEEEE-ECCEEEEe------------------------------------cccc--------------
Confidence 755422111 111122 12211000 0000
Q ss_pred hhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEE-cCCceEEEe-CCCc
Q 010995 162 HDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH-SRNGVTVKT-EDGC 239 (496)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~-~~~~v~V~~-~~G~ 239 (496)
..++...... +-..+.+.|.+.+.+ .|++++++++|++++. +++++.|+. .+|+
T Consensus 91 ---------------~~~~~~~~~~---~~~~l~~~Ll~~a~~------~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~ 146 (392)
T PRK08243 91 ---------------LTGGRAVTVY---GQTEVTRDLMAARLA------AGGPIRFEASDVALHDFDSDRPYVTYEKDGE 146 (392)
T ss_pred ---------------ccCCceEEEe---CcHHHHHHHHHHHHh------CCCeEEEeeeEEEEEecCCCceEEEEEcCCe
Confidence 0000001111 112345555555444 6899999999999987 556666665 4663
Q ss_pred --EEEcCEEEEecChHHHhc
Q 010995 240 --VYEANYVILSASIGVLQS 257 (496)
Q Consensus 240 --~~~ad~VI~A~p~~~l~~ 257 (496)
+++||.||-|-..+...+
T Consensus 147 ~~~i~ad~vVgADG~~S~vR 166 (392)
T PRK08243 147 EHRLDCDFIAGCDGFHGVSR 166 (392)
T ss_pred EEEEEeCEEEECCCCCCchh
Confidence 689999999988766554
No 68
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.35 E-value=3.7e-10 Score=113.34 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=39.2
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
.|++++++++|++|..+++++.|++.+|..+++|.||.|.....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 57899999999999988888999888888899999999988654
No 69
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.34 E-value=1.8e-11 Score=119.59 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=111.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEec-----CCCCCCChHHHH
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAG-----VGGKESNPVWEL 77 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~-----~~~~~~~~~~~l 77 (496)
.++||+||||||.|+++|+.|++.+ + +|+|+|+.+.+|--.++ .+..++..|..+-.+ +-.......+++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~-~V~llEk~~~~a~~sS~--~NSgviHag~~y~p~slka~l~~~g~~~~~~~ 78 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDL-SVALLEKEDGVAQESSS--NNSGVIHAGLYYTPGSLKAKLCVAGNINEFAI 78 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCc-eEEEEEccCcccccccc--CcccceeccccCCCcchhhHHHHHHHHHHHHH
Confidence 5789999999999999999999998 8 79999999999876665 222233333111100 000012233567
Q ss_pred HHhcCCccccccCCCcceEEEcCCCcccC--hhHHHHHHHHHHHHHHHHhcccc-ccchhHHHHHHhhhcCCCCCCChHH
Q 010995 78 ASKSGLRTCFSDYTNARYNIYDRSGKIIP--SGVAADSYKKAVESAIANLKNLE-ATNSNIGEVIKAATELPSSPKTPLE 154 (496)
Q Consensus 78 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (496)
+++++++... .|+++- .+.-.+.++...++... ...+ ....+-+++.+.
T Consensus 79 ~kq~~~~f~~-------------~g~l~vA~~e~e~~~L~~l~~~~~~--ngv~~~~~ld~~~i~~~------------- 130 (429)
T COG0579 79 CKQLGIPFIN-------------CGKLSVATGEEEVERLEKLYERGKA--NGVFDLEILDKEEIKEL------------- 130 (429)
T ss_pred HHHhCCcccc-------------cCeEEEEEChHHHHHHHHHHHHHhh--CCCcceeecCHHHHHhh-------------
Confidence 7777743221 122211 00001111111111111 0111 011111122111
Q ss_pred HHHHHHHhhccccccCCcccccccCCcceeeeCcc---cHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-
Q 010995 155 LAIDFILHDFEMAEVEPISTYVDFGEREFLVADER---GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG- 230 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~- 230 (496)
++...- +.........+ .+..+..+|++.+++ .|++|++|++|+.|++.+++
T Consensus 131 ---------------eP~l~~---~~~aal~~p~~giV~~~~~t~~l~e~a~~------~g~~i~ln~eV~~i~~~~dg~ 186 (429)
T COG0579 131 ---------------EPLLNE---GAVAALLVPSGGIVDPGELTRALAEEAQA------NGVELRLNTEVTGIEKQSDGV 186 (429)
T ss_pred ---------------Cccccc---cceeeEEcCCCceEcHHHHHHHHHHHHHH------cCCEEEecCeeeEEEEeCCce
Confidence 111000 00001111111 367799999999988 79999999999999999885
Q ss_pred eEEEeCCCcE-EEcCEEEEecChHHHh
Q 010995 231 VTVKTEDGCV-YEANYVILSASIGVLQ 256 (496)
Q Consensus 231 v~V~~~~G~~-~~ad~VI~A~p~~~l~ 256 (496)
..+.+.+|++ ++|+.||.|.+.....
T Consensus 187 ~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 187 FVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred EEEEecCCcEEEEeeEEEECCchhHHH
Confidence 4477888866 9999999999876543
No 70
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.34 E-value=2e-11 Score=123.04 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC-----cEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG-----CVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VI~A~p~~~ 254 (496)
...++..|.+.+.+ .|++|+.+++|++|+.+++++++.+.++ .+++||+||+|+.+..
T Consensus 196 ~~~~~~~l~~~a~~------~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACAR------LGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 45677777777766 7999999999999998888777654332 3789999999998764
No 71
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.33 E-value=6.6e-10 Score=115.68 Aligned_cols=164 Identities=21% Similarity=0.302 Sum_probs=98.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL 83 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl 83 (496)
..++||+|||||++||++|..|+++|+ +|+|+|+.+.++..-+ .+. -..+..++++++|+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~~~~~~~r--------------a~~-----l~~~~~~~L~~lGl 67 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWPTLYDLPR--------------AVG-----IDDEALRVLQAIGL 67 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCCc--------------eee-----eCHHHHHHHHHcCC
Confidence 347899999999999999999999999 6999999876532111 111 23467788899998
Q ss_pred ccccccCC--CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995 84 RTCFSDYT--NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL 161 (496)
Q Consensus 84 ~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (496)
........ .....+++.+|..+.. +.. +
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~g~~~~~-------------------------------------~~~-~------------ 97 (538)
T PRK06183 68 ADEVLPHTTPNHGMRFLDAKGRCLAE-------------------------------------IAR-P------------ 97 (538)
T ss_pred hhHHHhhcccCCceEEEcCCCCEEEE-------------------------------------EcC-C------------
Confidence 75542211 1112233333321100 000 0
Q ss_pred hhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeC--CC-
Q 010995 162 HDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTE--DG- 238 (496)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~--~G- 238 (496)
....++........+ ..+-+.|.+.+.+. .|++|+++++|++|+.++++|+|++. +|
T Consensus 98 ------------~~~~~g~~~~~~~~q---~~le~~L~~~~~~~-----~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~ 157 (538)
T PRK06183 98 ------------STGEFGWPRRNAFHQ---PLLEAVLRAGLARF-----PHVRVRFGHEVTALTQDDDGVTVTLTDADGQ 157 (538)
T ss_pred ------------CCCCCCCChhccCCh---HHHHHHHHHHHHhC-----CCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence 000000000000001 11233333433321 48999999999999999999887765 46
Q ss_pred -cEEEcCEEEEecChHHHhc
Q 010995 239 -CVYEANYVILSASIGVLQS 257 (496)
Q Consensus 239 -~~~~ad~VI~A~p~~~l~~ 257 (496)
++++||.||-|-..+...+
T Consensus 158 ~~~i~ad~vVgADG~~S~vR 177 (538)
T PRK06183 158 RETVRARYVVGCDGANSFVR 177 (538)
T ss_pred EEEEEEEEEEecCCCchhHH
Confidence 4789999999998876554
No 72
>PRK06834 hypothetical protein; Provisional
Probab=99.32 E-value=1.1e-09 Score=112.05 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHh
Q 010995 194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQ 256 (496)
Q Consensus 194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~ 256 (496)
+-+.|.+.+.+ .|++|+++++|++|+.+++++.|++.+|++++||+||.|.......
T Consensus 102 le~~L~~~l~~------~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 102 IERILAEWVGE------LGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHh------CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 44445555544 6899999999999999999999888888889999999998775543
No 73
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.32 E-value=8.2e-10 Score=109.72 Aligned_cols=161 Identities=13% Similarity=0.128 Sum_probs=98.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
+.||+|||||++||++|..|+++|+ +|+|+|+.+.... ....+..+.. -.++..++++++|+..
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~~~~~~--------~~~~~~r~~~-------l~~~~~~~L~~lGl~~ 64 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGI-KTTIFESKSVKSP--------EFFKDIRTTA-------LTPHSKNFLFSIDIWE 64 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCC-eEEEecCCCCCCC--------ccCcCceEEE-------eCHHHHHHHHHCCcHH
Confidence 4689999999999999999999999 6999998643211 0000111111 2345778889999854
Q ss_pred ccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhh
Q 010995 86 CFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHD 163 (496)
Q Consensus 86 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (496)
....... ....+++.+|...-
T Consensus 65 ~l~~~~~~~~~~~~~~~~g~~~~--------------------------------------------------------- 87 (374)
T PRK06617 65 ELEKFVAEMQDIYVVDNKASEIL--------------------------------------------------------- 87 (374)
T ss_pred HHHhhcCCCcEEEEEECCCceEE---------------------------------------------------------
Confidence 3321111 11223323322100
Q ss_pred ccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEc
Q 010995 164 FEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEA 243 (496)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~a 243 (496)
.+. . .......+.+ . ...|.+.|.+.+.+. .+++++++++|++|..+++++.|.+.++ +++|
T Consensus 88 -~~~---~----~~~~~~g~~v--~--r~~L~~~L~~~~~~~-----~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~a 149 (374)
T PRK06617 88 -DLR---N----DADAVLGYVV--K--NSDFKKILLSKITNN-----PLITLIDNNQYQEVISHNDYSIIKFDDK-QIKC 149 (374)
T ss_pred -Eec---C----CCCCCcEEEE--E--HHHHHHHHHHHHhcC-----CCcEEECCCeEEEEEEcCCeEEEEEcCC-EEee
Confidence 000 0 0000001111 1 355666666665542 3478999999999999888898888776 8999
Q ss_pred CEEEEecChHHHhc
Q 010995 244 NYVILSASIGVLQS 257 (496)
Q Consensus 244 d~VI~A~p~~~l~~ 257 (496)
|.||.|-..+...+
T Consensus 150 dlvIgADG~~S~vR 163 (374)
T PRK06617 150 NLLIICDGANSKVR 163 (374)
T ss_pred CEEEEeCCCCchhH
Confidence 99999988765544
No 74
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.30 E-value=2.2e-09 Score=107.27 Aligned_cols=32 Identities=41% Similarity=0.676 Sum_probs=30.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+||+|||||+||++||+.|+++|+ +|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI-ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 699999999999999999999999 69999997
No 75
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.30 E-value=2.3e-09 Score=111.92 Aligned_cols=64 Identities=25% Similarity=0.497 Sum_probs=49.5
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC--eEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995 2 DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG--GRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79 (496)
Q Consensus 2 ~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G--Gr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~ 79 (496)
..+.++||+|||||++||++|+.|+++|+ +|+|+|+++.+. +|.. . -..+..++++
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~~~~~~~ra~----------------~-----l~~~~~~~l~ 76 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDDTLSTGSRAI----------------C-----FAKRSLEIFD 76 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCCCCCeEE----------------E-----EcHHHHHHHH
Confidence 34567899999999999999999999999 699999987542 2211 1 2345678899
Q ss_pred hcCCcccc
Q 010995 80 KSGLRTCF 87 (496)
Q Consensus 80 ~lgl~~~~ 87 (496)
++|+....
T Consensus 77 ~lGl~~~l 84 (547)
T PRK08132 77 RLGCGERM 84 (547)
T ss_pred HcCCcHHH
Confidence 99987554
No 76
>PRK06126 hypothetical protein; Provisional
Probab=99.30 E-value=1e-09 Score=114.70 Aligned_cols=66 Identities=26% Similarity=0.358 Sum_probs=49.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhc
Q 010995 2 DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS 81 (496)
Q Consensus 2 ~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~l 81 (496)
.....+||+|||||++||++|..|+++|+ +|+|+|+.+.+.- . + .+.. ...+..++++++
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~-~v~viEr~~~~~~------~-~-----ra~~-------l~~r~~e~L~~l 62 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGV-DSILVERKDGTAF------N-P-----KANT-------TSARSMEHFRRL 62 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC------C-C-----cccc-------CCHHHHHHHHhc
Confidence 34567899999999999999999999999 6999998753210 0 0 0111 345678889999
Q ss_pred CCcccc
Q 010995 82 GLRTCF 87 (496)
Q Consensus 82 gl~~~~ 87 (496)
|+....
T Consensus 63 Gl~~~l 68 (545)
T PRK06126 63 GIADEV 68 (545)
T ss_pred ChHHHH
Confidence 987654
No 77
>PRK08244 hypothetical protein; Provisional
Probab=99.30 E-value=6.4e-10 Score=114.67 Aligned_cols=62 Identities=26% Similarity=0.238 Sum_probs=47.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
.+||+|||||++||++|..|+++|+ +|+|+|+.+.+.- . ..+.. -.++..++++++|+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~~~~~-------~-----~ra~~-------l~~~~~e~l~~lGl~~ 61 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV-KTCVIERLKETVP-------Y-----SKALT-------LHPRTLEILDMRGLLE 61 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCC-------C-----cceeE-------ecHHHHHHHHhcCcHH
Confidence 5899999999999999999999999 6999999864310 0 00111 3456788999999865
Q ss_pred cc
Q 010995 86 CF 87 (496)
Q Consensus 86 ~~ 87 (496)
..
T Consensus 62 ~l 63 (493)
T PRK08244 62 RF 63 (493)
T ss_pred HH
Confidence 44
No 78
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.30 E-value=5.1e-11 Score=118.69 Aligned_cols=57 Identities=28% Similarity=0.307 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
...++..+.+.+.+ .|++++++++|++|..+++++.|.+.+| ++.+|.||+|++...
T Consensus 148 p~~~~~~~~~~~~~------~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 148 PELAIKAHLRLARE------AGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHH------CCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 34566666666555 6999999999999999888888988887 899999999998753
No 79
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.29 E-value=6.7e-11 Score=120.59 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
...++..|++.+.+ .|++|+.+++|++|+. ++.+.|+|.+| ++.||+||+|+...
T Consensus 182 P~~l~~~L~~~a~~------~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALE------LGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHH------cCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 45677888877766 7999999999999985 45577888877 79999999998754
No 80
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.2e-10 Score=106.33 Aligned_cols=71 Identities=28% Similarity=0.512 Sum_probs=63.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee--CCcEE-eecceEEecCCCCCCChHHHHHHhc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF--GGVSV-ELGAGWIAGVGGKESNPVWELASKS 81 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~--~g~~~-d~G~~~~~~~~~~~~~~~~~l~~~l 81 (496)
+.|.+|||||++|+..|..|++.|. +|+|+|+++++||.|.+... .|..+ -.|+|.|+. ....+|+++..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk-~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT----~~~~Vwdyv~~F 74 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT----DNKRVWDYVNQF 74 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCC-EEEEEeccccCCCccccccCCCCCeEEeeccCceeec----CchHHHHHHhhh
Confidence 4799999999999999999999999 69999999999999999765 46554 569999998 999999999874
No 81
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.26 E-value=2e-10 Score=116.48 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcc----CCCCCccccceeeCceeEEEEEcC-CceEEEeCCCcEEEcCEEEEecChHHH
Q 010995 191 YAHLLYKMAEEFLS----TSDGKILDNRLKLNKVVRELQHSR-NGVTVKTEDGCVYEANYVILSASIGVL 255 (496)
Q Consensus 191 ~~~l~~~l~~~~~~----~~~~~~~g~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VI~A~p~~~l 255 (496)
...+.+.|.+.+.+ . | .+++|+++++|++|+.++ +.+.|+|.+| ++.||+||+|+.....
T Consensus 210 ~~~L~~al~~~a~~~~~~~--G--~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVP--G--KKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhc--C--CCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 56778888777654 2 0 126799999999999874 4577888887 7999999999987654
No 82
>PLN02463 lycopene beta cyclase
Probab=99.26 E-value=2.2e-09 Score=107.85 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=42.9
Q ss_pred HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.+.+.|.+.+.+ .|++++ +++|++|+.+++++.|++.+|.+++||.||.|....
T Consensus 115 ~L~~~Ll~~~~~------~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIA------NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhh------cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 344555555544 578885 579999999988889999999899999999999765
No 83
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.25 E-value=1.7e-09 Score=109.72 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=44.7
Q ss_pred HHHHHHHHhhccCCCCCcc--ccceeeCceeEEEEEc-------CCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995 193 HLLYKMAEEFLSTSDGKIL--DNRLKLNKVVRELQHS-------RNGVTVKTEDGCVYEANYVILSASIGVLQS 257 (496)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~~--g~~i~~~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~ 257 (496)
.+.+.|.+.+.+. . +++++++++|++|+.+ +++++|++.+|++++||.||-|-......+
T Consensus 118 ~l~~~L~~~~~~~-----~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 118 NIQNSLYNRLQEY-----NGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHHHHHHhC-----CCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 3445555554431 2 4899999999999752 456889888999999999999988766544
No 84
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.25 E-value=2.3e-10 Score=106.11 Aligned_cols=41 Identities=46% Similarity=0.710 Sum_probs=37.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
..+||+|||||++||+||+.|+++|. +|+|+|++..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCccc
Confidence 46899999999999999999999999 699999999998754
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.23 E-value=3.5e-10 Score=114.30 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
...+++.|.+.+.+ .|++|+++++|++|+.+++++. |++.++ ++.||+||+|+.+..
T Consensus 200 p~~~~~~l~~~~~~------~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQ------LGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 45677888777766 7999999999999998888765 777655 899999999998753
No 86
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.22 E-value=2e-10 Score=106.87 Aligned_cols=41 Identities=34% Similarity=0.579 Sum_probs=37.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
..+||+|||||+|||+||+.|+++|+ +|+|+|+...+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCCcc
Confidence 46899999999999999999999999 699999999998754
No 87
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.22 E-value=1.4e-10 Score=114.36 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeC---CC--cEEEcCEEEEecChHHHhc
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTE---DG--CVYEANYVILSASIGVLQS 257 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~---~G--~~~~ad~VI~A~p~~~l~~ 257 (496)
..+-+.|.+.+.+ .|++|+++++|++++.+++++++.+. +| ++++||.||-|-..+...+
T Consensus 111 ~~l~~~L~~~~~~------~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR 175 (356)
T PF01494_consen 111 PELDRALREEAEE------RGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVR 175 (356)
T ss_dssp HHHHHHHHHHHHH------HTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHH
T ss_pred HHHHHhhhhhhhh------hhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchh
Confidence 3455556666555 68999999999999998888764432 33 3689999999988766443
No 88
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.21 E-value=3e-10 Score=114.29 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-CCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-RNGVT-VKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~-V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
..+...|++.+.+ .|++++.+++|++|+.. ++++. |++.+| ++.+++||+|+....
T Consensus 183 ~~l~~~l~~~a~~------~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADR------RGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHH------CCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 4566777777666 79999999999999864 45554 888777 799999999876543
No 89
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.21 E-value=3.1e-10 Score=114.70 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-CCceEEE---eCCCc--EEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-RNGVTVK---TEDGC--VYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~V~---~~~G~--~~~ad~VI~A~p~~~ 254 (496)
...+.++|.+.+.+. .|++|+++++|++|+.+ +++|+|. +.+|+ +++||+||+|+....
T Consensus 183 ~~~L~~aL~~~l~~~-----~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESH-----PNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhC-----CCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 566788888877542 58999999999999987 6677765 44452 689999999998765
No 90
>PRK07190 hypothetical protein; Provisional
Probab=99.20 E-value=2.9e-10 Score=116.08 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=41.4
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS 257 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~ 257 (496)
.|++|+++++|++|+.+++++.+.+.+|++++||+||.|.......+
T Consensus 122 ~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR 168 (487)
T PRK07190 122 AGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVR 168 (487)
T ss_pred CCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHH
Confidence 68999999999999999888888877888899999999998766544
No 91
>PRK07538 hypothetical protein; Provisional
Probab=99.20 E-value=3.8e-09 Score=106.48 Aligned_cols=60 Identities=27% Similarity=0.490 Sum_probs=45.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF 87 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~ 87 (496)
||+|||||++||++|..|+++|+ +|+|+|+++.++- .|.. +. -.++..+.++++|+....
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~-------------~g~g-i~-----l~p~~~~~L~~lgl~~~l 61 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAPELRP-------------LGVG-IN-----LLPHAVRELAELGLLDAL 61 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCCcccc-------------cCcc-ee-----eCchHHHHHHHCCCHHHH
Confidence 79999999999999999999999 6999999865420 1111 11 234577888889986543
No 92
>PRK05868 hypothetical protein; Validated
Probab=99.20 E-value=3.8e-10 Score=111.83 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=98.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
|.||+|||||++||++|..|+++|+ +|+|+|+++.+.- .|.. +. ...+..++++++|+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~~~~~-------------~g~~-i~-----~~~~a~~~L~~lGl~~ 60 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHPGLRP-------------GGQA-ID-----VRGPALDVLERMGLLA 60 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCC-------------Ccee-ee-----eCchHHHHHHhcCCHH
Confidence 4689999999999999999999999 6999999865421 1111 11 2345668889999864
Q ss_pred ccccC--CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhh
Q 010995 86 CFSDY--TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHD 163 (496)
Q Consensus 86 ~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (496)
..... ......+++.+|..+.... ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------------------~~----------------------- 88 (372)
T PRK05868 61 AAQEHKTRIRGASFVDRDGNELFRDT-----------------------------ES----------------------- 88 (372)
T ss_pred HHHhhccCccceEEEeCCCCEEeecc-----------------------------cc-----------------------
Confidence 43211 1111223334443211000 00
Q ss_pred ccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEc
Q 010995 164 FEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEA 243 (496)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~a 243 (496)
.... ..++.. .+... -..|.+.|.+.+. .|++++++++|++|+.++++|+|+..+|++++|
T Consensus 89 ------~~~~--~~~~~~-~~~i~---R~~L~~~l~~~~~-------~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~a 149 (372)
T PRK05868 89 ------TPTG--GPVNSP-DIELL---RDDLVELLYGATQ-------PSVEYLFDDSISTLQDDGDSVRVTFERAAAREF 149 (372)
T ss_pred ------cccC--CCCCCc-eEEEE---HHHHHHHHHHhcc-------CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEe
Confidence 0000 000000 11111 1234444433322 578999999999999888889999999989999
Q ss_pred CEEEEecChHHHhc
Q 010995 244 NYVILSASIGVLQS 257 (496)
Q Consensus 244 d~VI~A~p~~~l~~ 257 (496)
|.||-|-..+...+
T Consensus 150 dlvIgADG~~S~vR 163 (372)
T PRK05868 150 DLVIGADGLHSNVR 163 (372)
T ss_pred CEEEECCCCCchHH
Confidence 99999988766554
No 93
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.20 E-value=2.7e-10 Score=114.30 Aligned_cols=166 Identities=22% Similarity=0.388 Sum_probs=101.2
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
|+ ++.||+|||||++||++|..|+++|+ +|+|+|+++.++- .|.. +. -.++..+++++
T Consensus 1 ~~--~~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~~~~~-------------~g~g-i~-----l~~~~~~~l~~ 58 (396)
T PRK08163 1 MT--KVTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAAEIGE-------------IGAG-IQ-----LGPNAFSALDA 58 (396)
T ss_pred CC--CCCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCccccc-------------ccce-ee-----eCchHHHHHHH
Confidence 54 36899999999999999999999999 6999999875431 1111 11 24567788999
Q ss_pred cCCccccccCC--CcceEEEcC-CCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHH
Q 010995 81 SGLRTCFSDYT--NARYNIYDR-SGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAI 157 (496)
Q Consensus 81 lgl~~~~~~~~--~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (496)
+|+........ .....+++. +|..+.. ......+.
T Consensus 59 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~----------------- 96 (396)
T PRK08163 59 LGVGEAARQRAVFTDHLTMMDAVDAEEVVR-------------------------IPTGQAFR----------------- 96 (396)
T ss_pred cCChHHHHhhccCCcceEEEeCCCCCEEEE-------------------------eccchhHH-----------------
Confidence 99865432110 111112221 1211000 00000000
Q ss_pred HHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCC
Q 010995 158 DFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTED 237 (496)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~ 237 (496)
..++. .+.... -..+.+.|.+.+.+. .+++++++++|++++.+++++.|++.+
T Consensus 97 ------------------~~~~~-~~~~i~---r~~l~~~L~~~~~~~-----~~v~~~~~~~v~~i~~~~~~v~v~~~~ 149 (396)
T PRK08163 97 ------------------ARFGN-PYAVIH---RADIHLSLLEAVLDH-----PLVEFRTSTHVVGIEQDGDGVTVFDQQ 149 (396)
T ss_pred ------------------HhcCC-cEEEEE---HHHHHHHHHHHHHhc-----CCcEEEeCCEEEEEecCCCceEEEEcC
Confidence 00111 111111 233555566555431 358999999999999888889998888
Q ss_pred CcEEEcCEEEEecChHHHhc
Q 010995 238 GCVYEANYVILSASIGVLQS 257 (496)
Q Consensus 238 G~~~~ad~VI~A~p~~~l~~ 257 (496)
|+++.||.||.|.......+
T Consensus 150 g~~~~ad~vV~AdG~~S~~r 169 (396)
T PRK08163 150 GNRWTGDALIGCDGVKSVVR 169 (396)
T ss_pred CCEEecCEEEECCCcChHHH
Confidence 88899999999998765443
No 94
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.19 E-value=1e-09 Score=111.87 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCc-eEEEeC---CCc--EEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNG-VTVKTE---DGC--VYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~-v~V~~~---~G~--~~~ad~VI~A~p~~~ 254 (496)
...+.+.|.+.+.+ .| ++|+++++|++|+.++++ |.|++. +|+ ++.||+||+|+....
T Consensus 182 ~~~l~~aL~~~a~~------~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQK------QGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHh------CCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 66788888888766 45 799999999999986554 766543 353 689999999998754
No 95
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.19 E-value=5.5e-11 Score=103.54 Aligned_cols=42 Identities=31% Similarity=0.515 Sum_probs=34.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..+||+|||||+|||+||++|+++|+ +|+|+|++..+||.+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS--EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCC-eEEEEecCCCCCcccc
Confidence 35799999999999999999999999 6999999999988443
No 96
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.18 E-value=4.2e-10 Score=113.73 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=39.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
+.++|+|||||+|||+||++|.+.|+ +|+|+|+++.+||...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGH-TVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCCCCcceee
Confidence 46899999999999999999999999 7999999999999765
No 97
>PRK11445 putative oxidoreductase; Provisional
Probab=99.18 E-value=1.3e-08 Score=100.16 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=37.9
Q ss_pred cccceeeCceeEEEEEcCCceEEEe-CCCc--EEEcCEEEEecChHHHh
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKT-EDGC--VYEANYVILSASIGVLQ 256 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VI~A~p~~~l~ 256 (496)
.|+++++++.|++|+.+++++.|++ .+|+ +++||.||.|.......
T Consensus 111 ~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 111 ASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred cCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 5789999999999999888888775 4664 68999999999876543
No 98
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.17 E-value=1.2e-08 Score=102.18 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-CCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-RNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
..+.+.|.+.+.+ .|++++ ..+|..+..+ ++.+.|++.+|++++||.||.|.+...
T Consensus 85 ~~l~~~l~~~~~~------~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPE------GGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHh------cCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 3455556555544 577775 6688888877 566778888888899999999999875
No 99
>PLN02697 lycopene epsilon cyclase
Probab=99.17 E-value=3.1e-08 Score=101.27 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
..+.+.|.+.+.+ .|+++ ++++|++|..+++++. +.+.+|.+++||.||.|.....
T Consensus 192 ~~L~~~Ll~~a~~------~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVE------SGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHh------cCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 3455666666554 58887 7889999998877765 4566778899999999998865
No 100
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.17 E-value=5.6e-10 Score=115.79 Aligned_cols=58 Identities=17% Similarity=0.016 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe---CCC--cEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT---EDG--CVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~G--~~~~ad~VI~A~p~~~ 254 (496)
-..++..++..+.+ .|++++++++|++|..+++++. |++ .+| .++.||.||+|+.+..
T Consensus 148 p~rl~~al~~~A~~------~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKE------HGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHh------CCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 34567777776666 7999999999999998877654 443 223 4789999999998754
No 101
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.17 E-value=5.7e-09 Score=102.25 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=52.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---CcEEEEeeCCCCCeEEEeeee--CCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGI---EDILILEASDRIGGRVRNEKF--GGVSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~---~~V~vlEa~~~~GGr~~t~~~--~g~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
++++=|||+|||+|+||.+|.+.|. ++|+|||+.+..||.+.+... .|+.+-.|-+. .. .+..+++|++.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~-~~----~~eclwdLls~ 76 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM-EF----HYECLWDLLSS 76 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc-cc----hhHHHHHHHHh
Confidence 5678899999999999999998642 279999999999999887553 35544444332 33 56667777765
No 102
>PRK06753 hypothetical protein; Provisional
Probab=99.16 E-value=5.2e-10 Score=111.30 Aligned_cols=152 Identities=19% Similarity=0.289 Sum_probs=96.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF 87 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~ 87 (496)
||+|||||++||++|..|+++|+ +|+|+|+++.+.- .|... . -.++..+.++++|+....
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~~~~~-------------~g~gi-~-----l~~~~~~~L~~~gl~~~~ 61 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNESVKE-------------VGAGI-G-----IGDNVIKKLGNHDLAKGI 61 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcccc-------------cccce-e-----eChHHHHHHHhcChHHHH
Confidence 79999999999999999999999 6999999876521 11111 1 234567777888875443
Q ss_pred ccC--CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhcc
Q 010995 88 SDY--TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFE 165 (496)
Q Consensus 88 ~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (496)
... ......+++.+|..+... .
T Consensus 62 ~~~~~~~~~~~~~~~~g~~~~~~-------------------------------~------------------------- 85 (373)
T PRK06753 62 KNAGQILSTMNLLDDKGTLLNKV-------------------------------K------------------------- 85 (373)
T ss_pred HhcCCcccceeEEcCCCCEEeec-------------------------------c-------------------------
Confidence 111 111123343444321000 0
Q ss_pred ccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCE
Q 010995 166 MAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANY 245 (496)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~ 245 (496)
+ ..+...+.+ .-..|.+.|.+.+. +.+|+++++|++|+.+++++.|++.+|+++++|.
T Consensus 86 ---------~-~~~~~~~~i----~R~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~ 143 (373)
T PRK06753 86 ---------L-KSNTLNVTL----HRQTLIDIIKSYVK--------EDAIFTGKEVTKIENETDKVTIHFADGESEAFDL 143 (373)
T ss_pred ---------c-ccCCccccc----cHHHHHHHHHHhCC--------CceEEECCEEEEEEecCCcEEEEECCCCEEecCE
Confidence 0 000000101 12345555555542 3579999999999988888999998998999999
Q ss_pred EEEecChHHHhc
Q 010995 246 VILSASIGVLQS 257 (496)
Q Consensus 246 VI~A~p~~~l~~ 257 (496)
||-|-+.....+
T Consensus 144 vigadG~~S~vR 155 (373)
T PRK06753 144 CIGADGIHSKVR 155 (373)
T ss_pred EEECCCcchHHH
Confidence 999988765444
No 103
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.16 E-value=1.8e-08 Score=101.80 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=32.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++||+|||||++|++||+.|+++|+ +|+|+|++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGI-ETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 56899999999999999999999999 699999974
No 104
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.15 E-value=7.4e-10 Score=109.85 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
...++..|.+.+.+. .|++|+.+++|++|+.. .|+|.+| .+.||+||+|+.+..
T Consensus 144 p~~~~~~l~~~~~~~-----~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQ-----HGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhc-----CCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 345667776665441 38999999999999753 6777777 578999999998754
No 105
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.14 E-value=1.5e-09 Score=110.59 Aligned_cols=58 Identities=17% Similarity=0.321 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC-CceEEEe---CCC--cEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR-NGVTVKT---EDG--CVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~V~~---~~G--~~~~ad~VI~A~p~~~ 254 (496)
...++++|.+.+.+ .|++|+++++|++|+.++ ++|.|++ .+| .+++||+||+|+....
T Consensus 177 p~~l~~aL~~~a~~------~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQ------NGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 57788888888776 699999999999999865 4566643 234 3689999999998644
No 106
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.14 E-value=4.3e-10 Score=115.68 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=40.0
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
|+....+||+|||||++|+++|+.|+++|+ +|+|+|+++..+|..
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~~~GtS 45 (508)
T PRK12266 1 MTMMETYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDLASATS 45 (508)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcc
Confidence 566678999999999999999999999999 699999998766644
No 107
>PRK06996 hypothetical protein; Provisional
Probab=99.14 E-value=1.9e-08 Score=100.90 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecCh
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASI 252 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p~ 252 (496)
..+.+.|.+.+.+ .|++++++++|++++.++++|+|+..+| ++++||.||-|-..
T Consensus 115 ~~l~~~L~~~~~~------~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRG------TPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 4566666666655 6889999999999999889999887654 58999999999773
No 108
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.14 E-value=7.6e-10 Score=117.93 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
...+++.|.+.+. .|++++++++|++|+.+++++.|.+.+|..+.||.||+|+....
T Consensus 407 p~~l~~aL~~~a~-------~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAG-------QQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhcc-------cCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 4567888877754 26899999999999998888989888887778999999998764
No 109
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.13 E-value=3.2e-08 Score=104.30 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=48.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCCC--CeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDRI--GGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK 80 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~~--GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~ 80 (496)
++..||+|||||++||++|..|++ .|+ +|+|+|+.+.. .|+. .. -..+..++++.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~~~~~grA--------------~g-------l~prtleiL~~ 87 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPGRLELGQA--------------DG-------IACRTMEMFQA 87 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCCCCCCCee--------------eE-------EChHHHHHHHh
Confidence 457899999999999999999999 499 69999997532 1211 11 24578899999
Q ss_pred cCCcccc
Q 010995 81 SGLRTCF 87 (496)
Q Consensus 81 lgl~~~~ 87 (496)
+|+....
T Consensus 88 lGl~d~l 94 (634)
T PRK08294 88 FGFAERI 94 (634)
T ss_pred ccchHHH
Confidence 9997655
No 110
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.12 E-value=9.2e-11 Score=106.07 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=33.2
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~ 252 (496)
.+.+++++++|++|++++++|.|++.++++++||+||+|+..
T Consensus 95 ~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 95 FGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred cCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 577899999999999999999999999888999999999984
No 111
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.12 E-value=4.1e-08 Score=98.18 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=32.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG 43 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G 43 (496)
.||+|||||++|++||+.|+++|+ +|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI-QTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-cEEEEecCCCCC
Confidence 489999999999999999999999 699999976443
No 112
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.11 E-value=4.8e-10 Score=115.41 Aligned_cols=58 Identities=16% Similarity=-0.002 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC----cEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG----CVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VI~A~p~~~ 254 (496)
-..++..++..+.+ .|++++.+++|+++..+++.+.|++.++ .++.||.||+|+++..
T Consensus 154 ~~rl~~~l~~~a~~------~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAE------RGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHH------CCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 35566666666665 7999999999999998887777766554 3589999999999754
No 113
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.11 E-value=9.5e-08 Score=94.69 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
..+-+.+.+.+.. ++.+++++.|++|+.+++++.|++.+|++++|+.||-|.++..
T Consensus 87 ~~f~~~l~~~~~~-------~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 87 ADFYEFLLERAAA-------GGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHHhhh-------CCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 3445555555442 4568899999999999998889999999999999999998543
No 114
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.11 E-value=2.6e-09 Score=107.91 Aligned_cols=59 Identities=25% Similarity=0.205 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe---CCCc--EEEcCEEEEecChHH
Q 010995 190 GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT---EDGC--VYEANYVILSASIGV 254 (496)
Q Consensus 190 G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~G~--~~~ad~VI~A~p~~~ 254 (496)
+...+++.|.+.+++ .|++|+++++|+++..++++|+ |.. .+|+ .+.|+.||+|+.-..
T Consensus 139 ~g~~~~~~l~~~~~~------~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 139 GGKALIEALAKAAEE------AGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHHH------TTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred cHHHHHHHHHHHHhh------cCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 567788888888887 7899999999999999888876 433 3554 578999999987543
No 115
>PLN02661 Putative thiazole synthesis
Probab=99.07 E-value=3.1e-09 Score=101.28 Aligned_cols=42 Identities=33% Similarity=0.573 Sum_probs=37.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~GGr~~ 47 (496)
..+||+|||||++||+||++|+++ |+ +|+|+|++..+||...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCccccccee
Confidence 468999999999999999999986 89 6999999999988444
No 116
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.07 E-value=9.2e-10 Score=109.91 Aligned_cols=58 Identities=29% Similarity=0.363 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
+....+.+.|.+.+.+ .|++|+++++|++|..+++.+.|++ +++++.+|.||+|++..
T Consensus 102 ~~a~~v~~~L~~~l~~------~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 102 DSAADVLDALLNELKE------LGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL 159 (400)
T ss_pred CCHHHHHHHHHHHHHH------CCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence 3467788888888776 6999999999999988777777877 45689999999999863
No 117
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.07 E-value=2e-09 Score=108.52 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS 257 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~ 257 (496)
..|.+.|.+.+. +..++++++|++|+.++++|+|++.+|.++++|.||.|-......+
T Consensus 105 ~~l~~~L~~~~~--------~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR 162 (414)
T TIGR03219 105 ADFLDALLKHLP--------EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALR 162 (414)
T ss_pred HHHHHHHHHhCC--------CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHH
Confidence 456777777652 3568999999999998888999988998999999999998776543
No 118
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.06 E-value=8.3e-09 Score=106.28 Aligned_cols=41 Identities=32% Similarity=0.552 Sum_probs=37.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
..+||||||||++||+||+.++++|. +|+|||+.+.+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCcc
Confidence 46799999999999999999999999 699999999999843
No 119
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.06 E-value=4.6e-09 Score=105.41 Aligned_cols=166 Identities=20% Similarity=0.300 Sum_probs=97.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
+.+|+|||||++||++|..|+++|+ +|+|+|+.+.+.- .|.. +. -.++..++++++|+..
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~~~~~-------------~g~g-i~-----l~~~~~~~L~~~Gl~~ 61 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQELSE-------------VGAG-LQ-----LAPNAMRHLERLGVAD 61 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCccCc-------------CCcc-ce-----eChhHHHHHHHCCChH
Confidence 3789999999999999999999999 6999999864420 1111 11 2356788889999865
Q ss_pred ccccCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhcc
Q 010995 86 CFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFE 165 (496)
Q Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (496)
...........++..+|...... . ..........
T Consensus 62 ~l~~~~~~~~~~~~~~g~~~~~~-------------------~---~~~~~~~~~~------------------------ 95 (400)
T PRK06475 62 RLSGTGVTPKALYLMDGRKARPL-------------------L---AMQLGDLARK------------------------ 95 (400)
T ss_pred HHhhcccCcceEEEecCCCcceE-------------------E---Eecchhhhhh------------------------
Confidence 54221111111222222210000 0 0000000000
Q ss_pred ccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEe---CCCcEEE
Q 010995 166 MAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT---EDGCVYE 242 (496)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ 242 (496)
.++ ..++.. .-..|.+.|.+.+.+. .+++++++++|+++..++++++|+. .++++++
T Consensus 96 -----------~~~-~~~~~i---~r~~l~~~L~~~~~~~-----~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~ 155 (400)
T PRK06475 96 -----------RWH-HPYIVC---HRADLQSALLDACRNN-----PGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVS 155 (400)
T ss_pred -----------cCC-CCceeE---CHHHHHHHHHHHHHhc-----CCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEe
Confidence 000 011111 1234555555554331 4789999999999998888887765 3345799
Q ss_pred cCEEEEecChHHHhc
Q 010995 243 ANYVILSASIGVLQS 257 (496)
Q Consensus 243 ad~VI~A~p~~~l~~ 257 (496)
||.||-|-..+...+
T Consensus 156 adlvIgADG~~S~vR 170 (400)
T PRK06475 156 AAYLIACDGVWSMLR 170 (400)
T ss_pred cCEEEECCCccHhHH
Confidence 999999998876655
No 120
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.06 E-value=4.5e-09 Score=96.72 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEE---cCCceEEEeCCCcEEEcCEEEEecChHHHh
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH---SRNGVTVKTEDGCVYEANYVILSASIGVLQ 256 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~---~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~ 256 (496)
.+-++.+...+.+ +|+.++.+..|..+.. ++..+.|.|.+|..+.|+.+|+|+.+...+
T Consensus 153 ~kslk~~~~~~~~------~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 153 AKSLKALQDKARE------LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred HHHHHHHHHHHHH------cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 4455555555555 7999999999999885 345678999999889999999999998765
No 121
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.05 E-value=1.1e-09 Score=112.02 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe--CCC--cEEEcCEEEEecCh
Q 010995 189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT--EDG--CVYEANYVILSASI 252 (496)
Q Consensus 189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~--~~G--~~~~ad~VI~A~p~ 252 (496)
++...++..|.+.+.+ .|++|+++++|++|..++++|. |.+ .+| ..+.|+.||+|+..
T Consensus 128 g~g~~l~~~l~~~~~~------~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 128 GGGKALVNALYRSAER------LGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred CCHHHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 3456678888877766 7999999999999998777665 444 233 36799999999863
No 122
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.05 E-value=2.8e-09 Score=106.68 Aligned_cols=58 Identities=24% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVL 255 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l 255 (496)
...+++.|++.+.+ .| ..+..+++|..++.+++.+.|.|.+|+ +.||+||+|+....-
T Consensus 155 p~~~~~~l~~~~~~------~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEE------LGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHh------cCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 35688888888776 67 566679999999986344668898885 999999999987654
No 123
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.04 E-value=1.2e-08 Score=103.80 Aligned_cols=38 Identities=32% Similarity=0.638 Sum_probs=35.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCCCCeEE
Q 010995 8 PVIIIGAGVSGISAGKILAENG-IEDILILEASDRIGGRV 46 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~~GGr~ 46 (496)
||||||||++||+||+.++++| . +|+|||+.+..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~-~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAA-NVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCc-cEEEEecCCCCCCcc
Confidence 8999999999999999999999 9 699999999988853
No 124
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.03 E-value=4.3e-09 Score=105.03 Aligned_cols=64 Identities=33% Similarity=0.493 Sum_probs=47.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
.+||+|||||++||++|..|+++|+ +|+|+|+.+..- .. -+.|+..+. .+..++++++|+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~~------~~----~~~~a~~l~-------~~~~~~L~~lGl~~ 63 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQSRDY------VL----GRIRAGVLE-------QGTVDLLREAGVDE 63 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC-CEEEEECCCCcc------cC----CceeEeeEC-------HHHHHHHHHCCChH
Confidence 5799999999999999999999999 699999987420 00 022333332 34778999999876
Q ss_pred cc
Q 010995 86 CF 87 (496)
Q Consensus 86 ~~ 87 (496)
..
T Consensus 64 ~l 65 (390)
T TIGR02360 64 RM 65 (390)
T ss_pred HH
Confidence 55
No 125
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.00 E-value=2.2e-08 Score=95.29 Aligned_cols=36 Identities=31% Similarity=0.688 Sum_probs=33.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
+.+||||||||+||++|..|+++|+ +|+|||+++.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~-~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI-DVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC-eEEEEeecccc
Confidence 5789999999999999999999999 79999998655
No 126
>PRK07121 hypothetical protein; Validated
Probab=98.99 E-value=1.8e-08 Score=103.80 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=37.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
..+||||||||++||+||..++++|. +|+|||+....||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCCcc
Confidence 46899999999999999999999999 699999999988854
No 127
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=9.3e-09 Score=102.15 Aligned_cols=43 Identities=33% Similarity=0.624 Sum_probs=39.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
...++|+|||||.|||++|++|.+.|+ +|+|+||++.+||.-.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~-~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGH-EVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCC-CceEEEecCCccceEe
Confidence 457899999999999999999999999 6999999999999544
No 128
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.95 E-value=1e-07 Score=95.56 Aligned_cols=58 Identities=21% Similarity=0.388 Sum_probs=46.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEec
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAG 65 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~ 65 (496)
...+||+||||||+|+.+|+.++-+|+ +|+|+|++|...|.... ....+.-|..|+..
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl-~v~LvE~~D~AsGTSsr---stkLiHGGlRYl~~ 67 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGL-KVALVEKGDLASGTSSR---STKLIHGGLRYLEQ 67 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCC-eEEEEecCcccCcccCc---cccCccchhhhhhh
Confidence 367999999999999999999999999 69999999998874432 22345556666654
No 129
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.94 E-value=1e-08 Score=107.81 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=35.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+.|+++|+.|+++|+ +|+|+|+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGL-RVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccCCC
Confidence 45899999999999999999999999 6999999976666
No 130
>PRK09897 hypothetical protein; Provisional
Probab=98.93 E-value=1.5e-08 Score=103.40 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhccCCCCCccc--cceeeCceeEEEEEcCCceEEEeCC-CcEEEcCEEEEecCh
Q 010995 191 YAHLLYKMAEEFLSTSDGKILD--NRLKLNKVVRELQHSRNGVTVKTED-GCVYEANYVILSASI 252 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g--~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VI~A~p~ 252 (496)
++...+.+.+.+.. .| ++++.+++|++|+.+++++.|++.+ |..+.||+||+|+..
T Consensus 106 L~~~f~~l~~~a~~------~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 106 FRDQFLRLVDQARQ------QKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHHH------cCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 44555555555443 45 6788999999999988889988855 467999999999974
No 131
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.92 E-value=3.3e-09 Score=108.71 Aligned_cols=37 Identities=49% Similarity=0.791 Sum_probs=32.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
++|+|||||+|||+||..|.+.|+ +|+++|+++.+||
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~~iGG 38 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSDDIGG 38 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSSSSSG
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCCCCCc
Confidence 689999999999999999999999 7999999999999
No 132
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.91 E-value=3.3e-08 Score=101.16 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=39.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
.++||+|||||++|++||++|++.|. +|+|+|+++.+||.+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~-~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGK-RVAVIERYRNVGGGCTH 46 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccccccccc
Confidence 57999999999999999999999999 79999999999998754
No 133
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.90 E-value=5.8e-07 Score=88.76 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=33.4
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCe
Q 010995 8 PVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGG 44 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GG 44 (496)
||+|||||+|||++|+.|+++ |+ +|+|+|+++.+||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~-~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF-RIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCCCCC
Confidence 899999999999999999997 99 6999999987765
No 134
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.90 E-value=1.5e-08 Score=97.50 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=36.9
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|+++++ ++|++|+.+++.+.|.+.+|.++.+|+||+|+...
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 5788988 89999999888888888888899999999999863
No 135
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.89 E-value=3.6e-08 Score=97.45 Aligned_cols=223 Identities=20% Similarity=0.281 Sum_probs=124.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC---------------------CcEEeecceE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG---------------------GVSVELGAGW 62 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~---------------------g~~~d~G~~~ 62 (496)
+..+||||+|-|+.-.-.|..|++.|. +|+.+|+++..||...|.+.. .+.+|+-+..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~Gk-kVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGK-KVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCC-EEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 358999999999999999999999999 699999999999999886521 2678998888
Q ss_pred EecCCCCCCChHHHHHHhcCCccccccCCCcceEEEcCCCcc--cChhHHH------------HHHHHHHHHHHHHhccc
Q 010995 63 IAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKI--IPSGVAA------------DSYKKAVESAIANLKNL 128 (496)
Q Consensus 63 ~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~--~~~~~~~------------~~~~~~~~~~~~~~~~~ 128 (496)
+.. ..++.+++-+-++.... +|......+...+|++ +|....+ ..+.+++........+.
T Consensus 81 l~a-----~g~LV~lLi~S~V~rYL-EFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~ 154 (438)
T PF00996_consen 81 LYA-----RGPLVKLLISSGVTRYL-EFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDD 154 (438)
T ss_dssp EET-----TSHHHHHHHHCTGGGGS-EEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTB
T ss_pred hhc-----cCHHHHHHHhCCcccce-EEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCC
Confidence 874 67888888888887665 3332222233346655 3321111 11111222211111111
Q ss_pred c-------ccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhccccccC---------C-------cccccccCCcceee
Q 010995 129 E-------ATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVE---------P-------ISTYVDFGEREFLV 185 (496)
Q Consensus 129 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~~~~~ 185 (496)
+ .....+.++++.+ .......+++...+.+..-. . +.+...||...++
T Consensus 155 ~~~~~~~~~~~~~~~e~~~~f--------~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfL- 225 (438)
T PF00996_consen 155 PSTHKGLDPEKKTFQELLKKF--------GLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFL- 225 (438)
T ss_dssp GGGSTTG-TTTSBHHHHHHHT--------TS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEE-
T ss_pred cchhhccccccccHHHHHHhc--------CCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccCCCCEE-
Confidence 1 1112356666541 11223333333222211100 0 1122346666555
Q ss_pred eCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC-CceE-EEeCCCcEEEcCEEEEe
Q 010995 186 ADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR-NGVT-VKTEDGCVYEANYVILS 249 (496)
Q Consensus 186 ~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~-V~~~~G~~~~ad~VI~A 249 (496)
++.-|.+.|++.+++..-- .|+...+|++|.+|..++ +++. |.+ +|+++.|++||..
T Consensus 226 yP~YG~GELpQ~FcRl~AV------~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 226 YPLYGLGELPQAFCRLSAV------YGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp EETT-TTHHHHHHHHHHHH------TT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred EEccCCccHHHHHHHHhhh------cCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 4556788999999876544 699999999999999854 4444 555 7889999999963
No 136
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.88 E-value=1.2e-07 Score=99.33 Aligned_cols=46 Identities=30% Similarity=0.571 Sum_probs=41.8
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
|.....+||+|||||++||+||+.++++|. +|+|+|+....||...
T Consensus 4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~-~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 4 MTNELTCDVLVIGSGAGGLSAAITARKLGL-DVVVLEKEPVFGGTTA 49 (574)
T ss_pred cCcCCCCCEEEECcCHHHHHHHHHHHHcCC-eEEEEecCCCCCCccc
Confidence 556678999999999999999999999999 6999999999998655
No 137
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.88 E-value=2e-08 Score=102.71 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=35.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCeE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGGR 45 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GGr 45 (496)
..+||+|||||.||+.||+.+++.|. +|+|+|++ +.+|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~-kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGA-KTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCC-cEEEEeccccccccc
Confidence 46999999999999999999999999 69999997 467653
No 138
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.88 E-value=4.7e-08 Score=83.98 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=35.3
Q ss_pred ccccee-eCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995 211 LDNRLK-LNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 211 ~g~~i~-~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~ 252 (496)
.|++|. ...+|++|...++++.|.+.+|..+.||+||+|+..
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 355554 567999999999999999999999999999999863
No 139
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.6e-08 Score=100.38 Aligned_cols=48 Identities=38% Similarity=0.705 Sum_probs=40.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF 51 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~ 51 (496)
..++||+|||||.|||++|++|.++|..+++||||++++||.=+..+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry 53 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRY 53 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccC
Confidence 457899999999999999999999999339999999999995443333
No 140
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.85 E-value=5.8e-08 Score=101.03 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS 257 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~ 257 (496)
..|.+.|.+.+. ...++++++|++|+.++++|+|++.+|+++++|.||.|-......+
T Consensus 194 ~~L~~~L~~alg--------~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR 251 (668)
T PLN02927 194 MTLQQILARAVG--------EDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVR 251 (668)
T ss_pred HHHHHHHHhhCC--------CCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHH
Confidence 356666666632 2247889999999999999999999998899999999998765443
No 141
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.85 E-value=1.8e-07 Score=96.58 Aligned_cols=40 Identities=28% Similarity=0.659 Sum_probs=37.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
..+|||||||| +||+||++++++|. +|+|||+.+..||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~-~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGL-SVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCC-cEEEEecCCCCCcce
Confidence 57899999999 99999999999999 699999999888854
No 142
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.84 E-value=1e-07 Score=96.24 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
..+||+|||+|.|||+||..++ +|. +|+|+|+.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~-~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDL-KILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCC-CEEEEecCCCCCCc
Confidence 4689999999999999999985 799 69999999887773
No 143
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.83 E-value=1.6e-07 Score=88.79 Aligned_cols=44 Identities=27% Similarity=0.533 Sum_probs=37.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCCcEEEEeeCCCCCeEEEe
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAEN------GIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~------G~~~V~vlEa~~~~GGr~~t 48 (496)
...+||+|||||.|||+||.+|.+. .+ +|+|+|+...+||.+-|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dl-rVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDL-RVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCce-EEEEEeeccccCCceec
Confidence 3568999999999999999999763 35 69999999999997665
No 144
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.81 E-value=2.8e-07 Score=96.51 Aligned_cols=43 Identities=28% Similarity=0.558 Sum_probs=39.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
...+||+|||+|.+|++||+.++++|. +|+|+|+.+.+||.+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGL-KVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCcccc
Confidence 347899999999999999999999999 6999999999998654
No 145
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.81 E-value=1.7e-08 Score=97.81 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=34.3
Q ss_pred cccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecCh
Q 010995 211 LDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~ 252 (496)
.+.+|. ..+|++|..++++|. |.+.+|..+.+|.||+|+..
T Consensus 109 ~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 566674 689999999999877 99999999999999999988
No 146
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.81 E-value=6.1e-08 Score=100.30 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=38.7
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
.|++++++++|++|...++.+.|.+.+|.++.||.||+|++...
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 57889999999999998778888888888899999999998843
No 147
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.81 E-value=5e-08 Score=100.84 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=38.0
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|..+++.+.|++.+|..+.+|++|+|++..
T Consensus 280 ~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 280 YPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred hCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 5789999999999998777788888888889999999999875
No 148
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=9.2e-08 Score=100.25 Aligned_cols=40 Identities=20% Similarity=0.483 Sum_probs=36.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC---CCcEEEEeeCCCCCeE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENG---IEDILILEASDRIGGR 45 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G---~~~V~vlEa~~~~GGr 45 (496)
..+||+|||||+|||+||..++++| . +|+|+|+....||.
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~-~V~lleK~~~~~~~ 46 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKL-SVAVVSKTQPMRSH 46 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCC-cEEEEEcccCCCCC
Confidence 4689999999999999999999998 8 69999999887773
No 149
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.78 E-value=3.6e-07 Score=94.96 Aligned_cols=41 Identities=29% Similarity=0.630 Sum_probs=37.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..+||||||+| +||+||...+++|. +|+|+|+.+.+||.+.
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~-~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGL-SVLIVEKSSYVGGSTA 55 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCC-cEEEEecCCCCcCccc
Confidence 47899999999 99999999999999 6999999999999554
No 150
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=1.6e-07 Score=99.07 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=35.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..++++|. +|+|+|+...+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~-~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGY-NVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEecCCCCCc
Confidence 35799999999999999999999999 6999999877753
No 151
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.76 E-value=1.5e-07 Score=97.95 Aligned_cols=41 Identities=32% Similarity=0.665 Sum_probs=37.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
..+||+|||+|.+||+||..|+++|. +|+|||+.+..||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~-~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGL-EPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcee
Confidence 47899999999999999999999999 699999999889854
No 152
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=1.3e-07 Score=99.71 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~-~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL-RVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC-CEEEEeccCCCCC
Confidence 45899999999999999999999999 6999999987665
No 153
>PRK12839 hypothetical protein; Provisional
Probab=98.75 E-value=7e-07 Score=93.08 Aligned_cols=44 Identities=30% Similarity=0.533 Sum_probs=40.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 3 STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 3 ~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
....+||+|||+|.+||+||+.|+++|. +|+|+|+.+.+||.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~-~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGA-KVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcccc
Confidence 4557899999999999999999999999 6999999999999764
No 154
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.75 E-value=1.2e-07 Score=99.52 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=34.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
||+|||||+|||+||..++++|. +|+|+|+....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~-~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL-NTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCCc
Confidence 89999999999999999999999 69999998877763
No 155
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=5.3e-07 Score=94.09 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~-~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF-KVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC-cEEEEEccCCCCC
Confidence 46899999999999999999999999 6999999887666
No 156
>PRK06116 glutathione reductase; Validated
Probab=98.75 E-value=1.6e-07 Score=95.79 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=43.3
Q ss_pred HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChH
Q 010995 193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.+.+.+.+.+.+ .|++++++++|++|+.++++ +.|.+.+|+++.+|.||+|++..
T Consensus 209 ~~~~~l~~~L~~------~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 209 DIRETLVEEMEK------KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred HHHHHHHHHHHH------CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCC
Confidence 345555555555 69999999999999986555 77888888889999999998643
No 157
>PLN02985 squalene monooxygenase
Probab=98.75 E-value=2.4e-07 Score=95.23 Aligned_cols=64 Identities=30% Similarity=0.446 Sum_probs=46.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL 83 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl 83 (496)
...+||+|||||++|+++|+.|+++|+ +|+|+|+......+. . +.. -.++-.++++++|+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~~~~~~~-----------~-g~~-------L~p~g~~~L~~LGl 100 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDLREPERM-----------M-GEF-------MQPGGRFMLSKLGL 100 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcCCCCccc-----------c-ccc-------cCchHHHHHHHcCC
Confidence 356899999999999999999999999 699999975321110 0 111 23346678889998
Q ss_pred cccc
Q 010995 84 RTCF 87 (496)
Q Consensus 84 ~~~~ 87 (496)
....
T Consensus 101 ~d~l 104 (514)
T PLN02985 101 EDCL 104 (514)
T ss_pred cchh
Confidence 7654
No 158
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.74 E-value=3.7e-07 Score=95.44 Aligned_cols=40 Identities=33% Similarity=0.640 Sum_probs=37.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
..+||+|||+|++||+||..++++|. +|+|||+.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGL-DTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCC-cEEEEEcCCCCCch
Confidence 46899999999999999999999999 69999999988883
No 159
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.73 E-value=3.7e-07 Score=94.81 Aligned_cols=39 Identities=23% Similarity=0.496 Sum_probs=36.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~~~~g 53 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGR-RVLVVTKAALDDG 53 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-eEEEEEccCCCCC
Confidence 46899999999999999999999999 6999999988776
No 160
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.73 E-value=4.9e-06 Score=80.44 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
+-.+++.+.+.|++ .|++|+++++|.+|+..++.+. |.+.+|+++.+|+||+|+.-..
T Consensus 172 l~~vvkni~~~l~~------~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLES------LGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHh------cCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 56678888888887 8999999999999999988655 8888999999999999997543
No 161
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.73 E-value=1.3e-07 Score=94.43 Aligned_cols=57 Identities=23% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
-..++++|+..+.. .|+.|..|++|++|....++ +.|.|..| .|++.+||.|+....
T Consensus 186 P~~lC~ala~~A~~------~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 186 PAGLCQALARAASA------LGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHHh------cCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 45688888888777 89999999999999987665 45999998 899999999998754
No 162
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.72 E-value=7.5e-07 Score=92.89 Aligned_cols=42 Identities=33% Similarity=0.679 Sum_probs=38.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC--CCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD--RIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~--~~GGr~~ 47 (496)
..+||+|||+|.|||+||..++++|. +|+|||+.+ ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~-~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGK-RVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCCCCcee
Confidence 47899999999999999999999999 699999999 7888553
No 163
>PTZ00367 squalene epoxidase; Provisional
Probab=98.72 E-value=2.4e-07 Score=95.79 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=46.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR 84 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~ 84 (496)
..+||+|||||++|+++|+.|+++|+ +|+|+|+....- .+. ..| .. -.++-.++++++|+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~~~~--------~~r--~~G-~~-------L~p~g~~~L~~LGL~ 92 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDLFSK--------PDR--IVG-EL-------LQPGGVNALKELGME 92 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCC-EEEEEccccccc--------cch--hhh-hh-------cCHHHHHHHHHCCCh
Confidence 56899999999999999999999999 799999864100 000 011 11 234677889999997
Q ss_pred ccc
Q 010995 85 TCF 87 (496)
Q Consensus 85 ~~~ 87 (496)
...
T Consensus 93 d~l 95 (567)
T PTZ00367 93 ECA 95 (567)
T ss_pred hhH
Confidence 654
No 164
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=1.2e-07 Score=99.35 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-E---EeCCCc--EEEcCEEEEecChH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-V---KTEDGC--VYEANYVILSASIG 253 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V---~~~~G~--~~~ad~VI~A~p~~ 253 (496)
-..+.+.|.+.+.+ .|++|++++.|+++..++++|. + ...+|+ .+.|+.||+|+.-.
T Consensus 134 G~~i~~~L~~~~~~------~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 134 GHAILHELVNNLRR------YGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred hHHHHHHHHHHHhh------CCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 35677888877765 6899999999999987766644 2 334553 58999999999764
No 165
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=1.7e-07 Score=97.52 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eE-EE--e-CCCc--EEEcCEEEEecChH
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VT-VK--T-EDGC--VYEANYVILSASIG 253 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~-V~--~-~~G~--~~~ad~VI~A~p~~ 253 (496)
..+.+.|.+.+.+ .|++|++++.|+++..++++ |. |. . .+|+ .+.|+.||+|+.-.
T Consensus 134 ~~i~~~L~~~~~~------~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIK------ERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhc------CCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 4577777777665 68999999999999877654 54 32 2 4553 58999999999753
No 166
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.71 E-value=5.7e-07 Score=94.62 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=35.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGY-KTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEeccCCCCC
Confidence 36799999999999999999999999 6999999887776
No 167
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.70 E-value=1.9e-07 Score=95.94 Aligned_cols=38 Identities=32% Similarity=0.620 Sum_probs=34.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
.+||+|||||+|||+||..+++.|. |+|+|+.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~--V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR--VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC--EEEEEccCCCCCc
Confidence 5799999999999999999999994 9999999877773
No 168
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.70 E-value=8.5e-07 Score=92.46 Aligned_cols=42 Identities=24% Similarity=0.543 Sum_probs=38.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..+||+|||+|.+|++||..++++|. +|+|||+.+.+||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~-~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGL-STVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCcccc
Confidence 47899999999999999999999999 6999999998888543
No 169
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.69 E-value=4.7e-09 Score=105.79 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=32.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
||||||||++|++||..++++|. +|+|+|+.+.+||..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~-~VlLiE~~~~lGG~~ 38 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA-KVLLIEKGGFLGGMA 38 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS--EEEE-SSSSSTGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCC-EEEEEECCccCCCcc
Confidence 79999999999999999999999 699999999999943
No 170
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.69 E-value=9.8e-08 Score=96.72 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc--CCceE-EEeC-CCcEEEcCEEEEecC
Q 010995 189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS--RNGVT-VKTE-DGCVYEANYVILSAS 251 (496)
Q Consensus 189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~--~~~v~-V~~~-~G~~~~ad~VI~A~p 251 (496)
++...+++.|.+.+++ .|++|+++++|++|..+ ++++. |.+. ++..+.|+.||+|+.
T Consensus 120 ~~g~~l~~~L~~~a~~------~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 120 GGGKALTNALYSSAER------LGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred CCHHHHHHHHHHHHHH------cCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 4567788888888777 79999999999999876 34454 4443 335789999999998
No 171
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=3.6e-07 Score=95.90 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..+++.|. +|+|+|+....||
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~-~V~lveK~~~~~g 49 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGL-KTACITKVFPTRS 49 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccCCCCc
Confidence 35799999999999999999999999 6999999876666
No 172
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.6e-07 Score=87.73 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=34.2
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
.|.++.. ..|.+++..++.+.|+|.+|. ++|++||+|+....
T Consensus 74 ~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 74 FGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred cCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 5667766 778888887767789999985 99999999997754
No 173
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=2.4e-07 Score=96.92 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=35.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lleK~~~~~g 44 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQ-SCALLSKVFPTRS 44 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccCCCCC
Confidence 45799999999999999999999999 6999999977766
No 174
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.65 E-value=1.9e-07 Score=85.49 Aligned_cols=41 Identities=37% Similarity=0.669 Sum_probs=36.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..-|||||+|+|||+|+..|...|- .|+++|+...+||..-
T Consensus 9 lspvvVIGgGLAGLsasn~iin~gg-~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 9 LSPVVVIGGGLAGLSASNDIINKGG-IVILLEKAGSIGGNSI 49 (477)
T ss_pred CCcEEEECCchhhhhhHHHHHhcCC-eEEEEeccCCcCCcce
Confidence 3469999999999999999999988 6999999999999544
No 175
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.65 E-value=9.2e-07 Score=90.28 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
...+.+.|.+.+.+ .|++++.+ .|+.+..+++++. |.+ +|+.+.+|.||+|+.-..
T Consensus 119 G~~i~~~L~~~~~~------~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 119 GKHIIKILYKHARE------LGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred hHHHHHHHHHHHHh------cCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 34677888777766 68899876 7888877666765 554 566899999999997644
No 176
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.65 E-value=5e-07 Score=95.55 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=35.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..++++|. +|+|+|+....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~-~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGL-DTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCC-CEEEEeCCCCCCc
Confidence 46899999999999999999999999 6999999877665
No 177
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.65 E-value=3e-07 Score=95.40 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=35.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
...+||+|||+|+|||+||..++ .|. +|+|+|+.+..||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~-~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHL-RVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCC-CEEEEEccCCCCCc
Confidence 45789999999999999999996 599 69999999887773
No 178
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.63 E-value=1.9e-06 Score=83.92 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeC-----CCcEEEcCEEEEecChHHHh
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTE-----DGCVYEANYVILSASIGVLQ 256 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~-----~G~~~~ad~VI~A~p~~~l~ 256 (496)
++.|.+.|.+.+.++ .|.++++|++|++|++.+++ |.|++. +..++.|+.|++...-..|.
T Consensus 180 FG~LTr~l~~~l~~~-----~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQ-----KGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHHhC-----CCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 788999998888774 58999999999999998766 887653 23579999999998766653
No 179
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.62 E-value=4.1e-07 Score=94.97 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeEE
Q 010995 6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGRV 46 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr~ 46 (496)
.+||+|||||+|||+||..++++ |. +|+|+|+....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~-~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHL-DVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCCCCCCc
Confidence 57999999999999999999987 57 699999998887743
No 180
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.61 E-value=4.6e-07 Score=90.13 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=43.7
Q ss_pred HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCC--cEEEcCEEEEecChH
Q 010995 193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDG--CVYEANYVILSASIG 253 (496)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VI~A~p~~ 253 (496)
.+.+.|.+.+.+ .|++|+++++|++++.+++++. +.+.+| ..++||.||+|+...
T Consensus 260 rL~~aL~~~l~~------~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFER------LGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHh------CCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 677788877766 7999999999999998877776 344445 358999999998753
No 181
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.61 E-value=1.2e-06 Score=92.20 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=35.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||+|+|||+||..++++|. +|+|+|+....||
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCC-cEEEEEcCCCCCC
Confidence 35799999999999999999999999 6999999887776
No 182
>PRK08275 putative oxidoreductase; Provisional
Probab=98.59 E-value=2.8e-07 Score=96.11 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=34.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||.|||+||..++++ |. +|+|+|+....+|
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~-~VilveK~~~~~~ 48 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPAL-RVLLLEKANVKRS 48 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEeCCCCCCC
Confidence 457999999999999999999987 68 6999999886433
No 183
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=6.6e-07 Score=93.76 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=36.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
++.||+|||+|+|||+||..++++|. +|+|+|+....||
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lieK~~~~~g 40 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGV-HVDLFSLVPVKRS 40 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCC-cEEEEEccCCCCC
Confidence 46799999999999999999999999 6999999988766
No 184
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.58 E-value=3.7e-06 Score=88.13 Aligned_cols=42 Identities=36% Similarity=0.660 Sum_probs=38.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..+||+|||+|.+|++||..++++|. +|+|+|+.+.+||.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGL-KVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCCccc
Confidence 45799999999999999999999999 6999999999999654
No 185
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=1.4e-06 Score=91.31 Aligned_cols=39 Identities=31% Similarity=0.449 Sum_probs=35.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||.|||+||..+++.|. +|+|+|+....||
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~vleK~~~~~g 49 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGL-SVAVLSKVFPTRS 49 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCC
Confidence 45799999999999999999999999 6999999877666
No 186
>PLN02815 L-aspartate oxidase
Probab=98.57 E-value=1.7e-06 Score=90.25 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=35.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||+|+|||+||..+++.| + |+|+|+....||
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~-VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-T-VAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-C-EEEEECCCCCCC
Confidence 3579999999999999999999999 5 999999998887
No 187
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.56 E-value=2e-06 Score=90.05 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=34.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..++++| . +|+|+|+....||
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~-~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNL-KIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCCCCC
Confidence 3689999999999999999999874 7 6999999987777
No 188
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.56 E-value=1.7e-06 Score=89.17 Aligned_cols=39 Identities=23% Similarity=0.511 Sum_probs=34.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
..+||+|||+|+|||+||..+++ |. +|+|+|+.+..||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~-~V~lveK~~~~~g~ 40 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EY-NVIIITKKTKRNSN 40 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CC-CEEEEeccCCCCCC
Confidence 36899999999999999999976 88 69999999887773
No 189
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.56 E-value=2e-06 Score=90.39 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=33.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIG 43 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~G 43 (496)
.+||+|||||.|||+||..++++ |. +|+|+|+....+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~-~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDL-KVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECCCcCC
Confidence 57999999999999999999998 99 699999987643
No 190
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.56 E-value=7.3e-07 Score=100.40 Aligned_cols=42 Identities=31% Similarity=0.594 Sum_probs=38.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
...+||+|||+|.|||+||...+++|. +|+|+|+.+..||..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGA-QVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEccCCCCCch
Confidence 346899999999999999999999999 699999999999854
No 191
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.55 E-value=1.4e-06 Score=88.38 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-e-EEEeCCCcEEEcCEEEEecChHHH
Q 010995 188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-V-TVKTEDGCVYEANYVILSASIGVL 255 (496)
Q Consensus 188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VI~A~p~~~l 255 (496)
+.-++.++...+.. .|++++.++ |++|..++++ + .|++.+|++++||.||=|++...+
T Consensus 153 R~~fd~~L~~~A~~---------~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 153 RAKFDQFLRRHAEE---------RGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHH---------TT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHHhc---------CCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 34466666666555 799998875 7777766554 4 488999999999999999987654
No 192
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.55 E-value=6e-07 Score=94.18 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 9 VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 9 VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
|+|||||+|||+||..++++|. +|+|+|+...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~-~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY-HVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC-CEEEEEecCCCCC
Confidence 7999999999999999999999 6999999986653
No 193
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=2.6e-06 Score=89.36 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=33.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
..+||+|||||+|||+||..+++. . +|+|+|+....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~-~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-A-RTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-C-CEEEEeCCCCCCC
Confidence 468999999999999999999986 7 6999999876555
No 194
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.51 E-value=3.3e-06 Score=87.73 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=35.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
...+||+|||+|+|||+||..+++. . +|+|+|+....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~-~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-R-RVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-C-CEEEEeccCCCCCC
Confidence 4568999999999999999999987 7 69999999887773
No 195
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.49 E-value=1.1e-06 Score=90.74 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeC-CC--cEEEcCEEEEecChH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTE-DG--CVYEANYVILSASIG 253 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~-~G--~~~~ad~VI~A~p~~ 253 (496)
-..+++.|.+.+.+. .|++|+.+++|+++..++++|. |... ++ ..+.||.||+|+.-.
T Consensus 135 G~~l~~~L~~~~~~~-----~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 135 GAAIMRALIAAVRAT-----PSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHHhC-----CCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 356777787776542 4899999999999887666554 3332 23 258999999999753
No 196
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.47 E-value=1.1e-05 Score=87.36 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCC
Q 010995 8 PVIIIGAGVSGISAGKILAEN--GIEDILILEASDR 41 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~ 41 (496)
+|+|||||++||+||..|+++ |+ +|+|+|+++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~-~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAH-EVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCC-eEEEEecCCC
Confidence 799999999999999999998 89 7999999764
No 197
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.44 E-value=2.8e-06 Score=87.08 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=33.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
+||+|||||.+|+.||..+++.|. +|+|+|+....+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~-~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA-KTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC-CEEEEecccccccC
Confidence 699999999999999999999999 69999997544443
No 198
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.43 E-value=2.7e-07 Score=100.93 Aligned_cols=42 Identities=31% Similarity=0.670 Sum_probs=39.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||+|||+||++|+++|+ +|+|+|+.+++||.++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCCCCceEE
Confidence 46899999999999999999999999 7999999999999876
No 199
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.41 E-value=3.6e-07 Score=99.19 Aligned_cols=43 Identities=42% Similarity=0.692 Sum_probs=39.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..++|+|||||+|||+||++|++.|+ +|+|+|+++.+||.++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecccccCceeee
Confidence 35799999999999999999999999 69999999999998864
No 200
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.37 E-value=3.7e-07 Score=88.21 Aligned_cols=43 Identities=37% Similarity=0.683 Sum_probs=40.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEee
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNE 49 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~ 49 (496)
..+|+|||||+|||+||..|++.|+ +|.|+|+++.+|||+...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCcccccHHhh
Confidence 4689999999999999999999999 699999999999997763
No 201
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.35 E-value=8.7e-06 Score=80.15 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCC--cEEEcCEEEEecChH
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDG--CVYEANYVILSASIG 253 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VI~A~p~~ 253 (496)
..+.++|.+.+++ .|+++..+++|.++..++++++ |.+.++ ..++||+||+|+...
T Consensus 263 ~RL~~aL~~~~~~------~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQ------LGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHH------CCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 4577778887776 7999999999999999888877 666665 479999999998765
No 202
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.34 E-value=5.6e-07 Score=91.99 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=38.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
++||+|||||++|++||..++++|. +|+|+|+++.+||.|-.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~-~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGL-KVACVEGRSTLGGTCLN 44 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCceeeeecc
Confidence 5899999999999999999999999 69999998899998743
No 203
>PRK12831 putative oxidoreductase; Provisional
Probab=98.33 E-value=7.4e-07 Score=90.75 Aligned_cols=43 Identities=33% Similarity=0.512 Sum_probs=39.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
...+||+|||||++||+||++|++.|+ +|+|+|+.+.+||.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCCeee
Confidence 356899999999999999999999999 6999999999999875
No 204
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.33 E-value=8e-07 Score=89.91 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=39.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAE--NGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~--~G~~~V~vlEa~~~~GGr~~t 48 (496)
..++|+|||||+|||+||+.|++ .|+ +|+|+|+.+.+||.++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCCCcceEee
Confidence 45789999999999999999997 799 69999999999998874
No 205
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.32 E-value=6.7e-07 Score=91.62 Aligned_cols=41 Identities=29% Similarity=0.519 Sum_probs=38.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
.+||+|||||++|++||+.|+++|. +|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~-~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGL-KVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCC-eEEEEec-CCCCCceee
Confidence 4899999999999999999999999 6999999 899998764
No 206
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.31 E-value=7.4e-07 Score=96.34 Aligned_cols=43 Identities=40% Similarity=0.674 Sum_probs=39.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..++|+|||||.|||+||++|+++|+ +|+|+|+.+.+||.++.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecccccCcceee
Confidence 46799999999999999999999999 79999999999998764
No 207
>PRK14694 putative mercuric reductase; Provisional
Probab=98.30 E-value=8.1e-07 Score=90.97 Aligned_cols=46 Identities=30% Similarity=0.473 Sum_probs=41.4
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
|.+...+||+|||||++|++||..|++.|. +|+|+|+. .+||.|..
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGA-RVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc-ccccceec
Confidence 666789999999999999999999999999 69999985 78997763
No 208
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.30 E-value=3.5e-06 Score=77.16 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-----eEEEeCCCcEEEcCEEEEecCh
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-----VTVKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-----v~V~~~~G~~~~ad~VI~A~p~ 252 (496)
+..+...+.+.+.+ .|+++.+|-+|+.|..+++. ++|....+++++...||-++..
T Consensus 195 ~~~v~ls~~edF~~------~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl 255 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDF------MGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGL 255 (453)
T ss_pred hHHHHHHHHHHHHH------hcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccc
Confidence 56677788888777 79999999999999987653 4555555688999999988765
No 209
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.29 E-value=1e-05 Score=82.77 Aligned_cols=40 Identities=30% Similarity=0.580 Sum_probs=35.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
++||+|||||.+|+.||..|+++|. +|+|+|++ .+||.|-
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~-~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGA-DVTVIERD-GLGGAAV 40 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc-CCCCccc
Confidence 4689999999999999999999999 69999986 4788765
No 210
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.29 E-value=9.3e-07 Score=89.83 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=38.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC-CCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR-IGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~-~GGr~~t 48 (496)
+.+||+|||||.+|++||..|++.|. +|+|+|+++. +||.|-.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK-KVALVEESKAMYGGTCIN 45 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecCCcccceeeec
Confidence 36899999999999999999999999 6999999874 6997643
No 211
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.28 E-value=1.2e-06 Score=87.24 Aligned_cols=45 Identities=29% Similarity=0.269 Sum_probs=39.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHH-HCCCCcEEEEeeCCCCCeEEEee
Q 010995 4 TSRSPVIIIGAGVSGISAGKILA-ENGIEDILILEASDRIGGRVRNE 49 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~-~~G~~~V~vlEa~~~~GGr~~t~ 49 (496)
...++|+|||||+|||+||.+|. +.|+ +|+|+|+.+.+||.++..
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCccEEEEe
Confidence 34678999999999999999765 6799 699999999999998853
No 212
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.28 E-value=1e-06 Score=89.59 Aligned_cols=43 Identities=30% Similarity=0.505 Sum_probs=38.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC-CCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD-RIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~-~~GGr~~t 48 (496)
+.+||+|||||.+|++||..|+++|. +|+|+|+.+ .+||.+..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~-~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC-eEEEEcCCCCccceeEee
Confidence 46899999999999999999999999 699999986 48998864
No 213
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.27 E-value=8.9e-07 Score=90.06 Aligned_cols=41 Identities=32% Similarity=0.595 Sum_probs=37.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
.+||+|||||++|++||..+++.|. +|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA-KVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEec-CccCceeec
Confidence 5899999999999999999999999 6999998 589997763
No 214
>PRK10262 thioredoxin reductase; Provisional
Probab=98.27 E-value=1.1e-06 Score=85.43 Aligned_cols=45 Identities=24% Similarity=0.500 Sum_probs=39.3
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
|...+.+||+|||||+|||+||..|+++|+ +|+|+|+. ..||.+.
T Consensus 1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~-~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 1 MGTTKHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM-EKGGQLT 45 (321)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHHCCC-CeEEEEee-cCCCcee
Confidence 666788999999999999999999999999 69999964 6787554
No 215
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.25 E-value=9.9e-07 Score=89.68 Aligned_cols=41 Identities=32% Similarity=0.621 Sum_probs=37.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
+.+||+|||||++|++||..|++.|. +|+|+|+. .+||.|-
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGA-KALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEeccc-cccccee
Confidence 36899999999999999999999999 69999984 6899765
No 216
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.22 E-value=1.7e-06 Score=90.17 Aligned_cols=42 Identities=36% Similarity=0.596 Sum_probs=38.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..+||+|||||+|||+||..|+++|+ +|+|+|+. .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~-~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL-DTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC-CCCceEEe
Confidence 46999999999999999999999999 69999995 78998764
No 217
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.4e-06 Score=89.05 Aligned_cols=42 Identities=29% Similarity=0.500 Sum_probs=38.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
.++||+|||||.+|++||..|++.|. +|+|+|+.+.+||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGL-ETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCccccccc
Confidence 36999999999999999999999999 6999999888999764
No 218
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.3e-06 Score=89.34 Aligned_cols=42 Identities=36% Similarity=0.523 Sum_probs=38.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..+||+|||||++|++||..|+++|+ +|+|+|+.. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~-~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC-cEEEEeccc-cccceee
Confidence 46899999999999999999999999 699999977 9997754
No 219
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.22 E-value=1.2e-05 Score=84.15 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHH----HCCCCcEEEEeeCCC
Q 010995 8 PVIIIGAGVSGISAGKILA----ENGIEDILILEASDR 41 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~----~~G~~~V~vlEa~~~ 41 (496)
||+|||||+|||+||..++ ++|. +|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~-~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL-KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC-eEEEEEccCC
Confidence 8999999999999999998 7899 6999999875
No 220
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=1.5e-06 Score=89.04 Aligned_cols=41 Identities=32% Similarity=0.535 Sum_probs=37.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
.++||+|||||++|++||..|++.|. +|+|+|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~-~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGK-KVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC-eEEEEeC-Ccccccee
Confidence 46999999999999999999999999 6999999 78899765
No 221
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.20 E-value=1.6e-06 Score=95.91 Aligned_cols=42 Identities=31% Similarity=0.549 Sum_probs=39.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||+|||+||+.|+++|+ +|+|+|+.+.+||.++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceee
Confidence 45799999999999999999999999 6999999999999776
No 222
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.20 E-value=1.7e-06 Score=92.10 Aligned_cols=42 Identities=36% Similarity=0.673 Sum_probs=39.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||+|||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceee
Confidence 46799999999999999999999999 6999999999999775
No 223
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=1.7e-06 Score=88.81 Aligned_cols=42 Identities=24% Similarity=0.463 Sum_probs=38.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..+||+|||||.+|++||..|++.|. +|+|+|+. .+||.|..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL-KTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc-CCCcceEc
Confidence 47999999999999999999999999 69999985 88998864
No 224
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=9.8e-06 Score=75.97 Aligned_cols=230 Identities=18% Similarity=0.281 Sum_probs=126.4
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--------------------CcEEeecc
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--------------------GVSVELGA 60 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~ 60 (496)
|.....+||+|+|-|+.-...+..|+-+|. +|+.+++++..|+-.+|.+.. .+.+|+-+
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k-~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~P 79 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGK-NVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIP 79 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCc-eEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhch
Confidence 777678999999999999999999999999 799999999999988885421 13445555
Q ss_pred eEEecCCCCCCChHHHHHHhcCCccccccCCCc-ceEEEcCCCccc--ChhHHHH-------HH-HHHHHHHHHHhcccc
Q 010995 61 GWIAGVGGKESNPVWELASKSGLRTCFSDYTNA-RYNIYDRSGKII--PSGVAAD-------SY-KKAVESAIANLKNLE 129 (496)
Q Consensus 61 ~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~-~~~~~~~~g~~~--~~~~~~~-------~~-~~~~~~~~~~~~~~~ 129 (496)
..+. ....+..++.+.|+..... +... .+.+| .+|+.. |....+- ++ ++.+.++.+...+..
T Consensus 80 K~l~-----A~s~l~~iLi~t~v~~YLe-fk~i~~~~~~-~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~ 152 (434)
T COG5044 80 KFLF-----ANSELLKILIETGVTEYLE-FKQISGSFLY-RPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYA 152 (434)
T ss_pred hhhc-----ccchHHHHHHHhChHhhee-eeeccccEEe-cCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHH
Confidence 5544 3556777777888876652 2221 23233 444543 3221110 11 111222221111111
Q ss_pred ccc-------h---hHHHHHHhhhcCCCCCCChHHHHHHHHHh--hcccccc-------CCcccccccCCcceeeeCccc
Q 010995 130 ATN-------S---NIGEVIKAATELPSSPKTPLELAIDFILH--DFEMAEV-------EPISTYVDFGEREFLVADERG 190 (496)
Q Consensus 130 ~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~G 190 (496)
+.. . ..+..++.+ .......+...-.+.. ++..... .-+.++..+|..++++ ++-|
T Consensus 153 ~~~~~~~~~~e~k~~~~~~~ekf----~L~~~~~e~i~~~i~l~ldl~~p~re~~erIl~Y~~Sf~~yg~~pyLy-p~YG 227 (434)
T COG5044 153 EQKSTLQELYESKDTMEFLFEKF----GLSGATEEFIGHGIALSLDLDIPAREALERILRYMRSFGDYGKSPYLY-PRYG 227 (434)
T ss_pred hhhhhchhhhhcccHHHHHHHHH----ccCcchhhhhhhhhhhhccccCCchHHHHHHHHHHHhhcccCCCccee-eccC
Confidence 110 0 112222210 0000000000000000 0000000 0012344566666664 4567
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEec
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSA 250 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~ 250 (496)
.+.|.+.+++.--- -|++..+|+++.+|....+..+|... +.+..|..||...
T Consensus 228 l~El~QGFaRssav------~GgtymLn~~i~ein~tk~v~~v~~~-~~~~ka~KiI~~~ 280 (434)
T COG5044 228 LGELSQGFARSSAV------YGGTYMLNQAIDEINETKDVETVDKG-SLTQKAGKIISSP 280 (434)
T ss_pred chhhhHHHHHhhhc------cCceeecCcchhhhccccceeeeecC-cceeecCcccCCc
Confidence 99999999887443 69999999999999887762234432 3477888888743
No 225
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.18 E-value=2.3e-06 Score=86.99 Aligned_cols=42 Identities=33% Similarity=0.580 Sum_probs=38.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcEee
Confidence 45799999999999999999999999 6999999999999764
No 226
>PRK14727 putative mercuric reductase; Provisional
Probab=98.18 E-value=2.4e-06 Score=87.72 Aligned_cols=44 Identities=36% Similarity=0.511 Sum_probs=40.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
+.++||+|||||.+|++||..|++.|. +|+|+|+.+.+||.|..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~-~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGA-RVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCcceeEecc
Confidence 456899999999999999999999999 69999999899998864
No 227
>PRK06370 mercuric reductase; Validated
Probab=98.17 E-value=2.2e-06 Score=87.76 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=36.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
.++||+|||||++|++||..|++.|+ +|+|+|+. .+||.|.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGM-KVALIERG-LLGGTCV 44 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-ccCCcee
Confidence 46999999999999999999999999 69999985 6777665
No 228
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.16 E-value=3e-06 Score=86.78 Aligned_cols=42 Identities=36% Similarity=0.696 Sum_probs=38.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCCCceee
Confidence 45799999999999999999999999 6999999999999765
No 229
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.14 E-value=7e-05 Score=78.07 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=30.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCC
Q 010995 8 PVIIIGAGVSGISAGKILAENG-IEDILILEASDR 41 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~ 41 (496)
|+||||||.+|+.+|.+|+++| + +|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~-~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSN-SVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCC-eEEEEecCCC
Confidence 8999999999999999999998 7 6999999863
No 230
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.14 E-value=3.1e-06 Score=91.67 Aligned_cols=42 Identities=36% Similarity=0.615 Sum_probs=39.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||+|||+||+.|+++|+ +|+|+|+.+.+||.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeee
Confidence 46799999999999999999999999 6999999999999865
No 231
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.13 E-value=3e-06 Score=86.74 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=37.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
+++||+|||||++|++||..|++.|. +|+|+|++ .+||.|..
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~-~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGL-KTAVVEKK-YWGGVCLN 44 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-CCCCceec
Confidence 36899999999999999999999999 69999984 78887764
No 232
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.13 E-value=0.00012 Score=71.66 Aligned_cols=36 Identities=31% Similarity=0.594 Sum_probs=32.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDR 41 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~ 41 (496)
.+++|||||||.+||.+|..|.++- + +|+|+|++++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~-~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDV-EITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCC-cEEEEeCCCc
Confidence 4678999999999999999999974 8 7999999875
No 233
>PTZ00058 glutathione reductase; Provisional
Probab=98.13 E-value=2.9e-06 Score=87.83 Aligned_cols=43 Identities=28% Similarity=0.491 Sum_probs=38.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
...+||+|||||.+|++||..+++.|. +|+|+|+. .+||.|-.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~-~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKA-KVALVEKD-YLGGTCVN 88 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCC-eEEEEecc-cccccccc
Confidence 357899999999999999999999999 69999985 79997754
No 234
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.12 E-value=3.1e-06 Score=84.83 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=40.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
...+|+|||||++||+||+.|+++|+ +|+|+|+.+.+||++..
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcCCCceeEEe
Confidence 35789999999999999999999999 79999999999999884
No 235
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.12 E-value=3.9e-06 Score=89.15 Aligned_cols=42 Identities=40% Similarity=0.677 Sum_probs=39.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||++||+||+.|++.|+ +|+|+|+++++||.++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceee
Confidence 45799999999999999999999999 6999999999999875
No 236
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.10 E-value=3.2e-06 Score=86.58 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=35.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
+||+|||||++|++||..|++.|. +|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~-~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA-SVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCc-ccCCee
Confidence 699999999999999999999999 699999865 787764
No 237
>PRK13748 putative mercuric reductase; Provisional
Probab=98.09 E-value=3.7e-06 Score=88.38 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=38.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..+||+|||||.+|++||..|+++|. +|+|+|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA-RVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecC-cceeeccc
Confidence 36899999999999999999999999 69999987 89998753
No 238
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.09 E-value=4.2e-06 Score=82.23 Aligned_cols=37 Identities=32% Similarity=0.465 Sum_probs=33.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG 43 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G 43 (496)
+.||+|||||++|+.||+.|++.|+ +|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCccC
Confidence 5699999999999999999999999 699999987653
No 239
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.08 E-value=4.4e-06 Score=88.67 Aligned_cols=42 Identities=31% Similarity=0.628 Sum_probs=39.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeee
Confidence 46899999999999999999999999 6999999999999875
No 240
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.08 E-value=6.9e-05 Score=82.67 Aligned_cols=36 Identities=33% Similarity=0.561 Sum_probs=33.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..+||+|||||.|||+||..+++.|. +|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~-~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGA-NVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCC-eEEEEecccc
Confidence 35799999999999999999999999 6999999874
No 241
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.07 E-value=5e-06 Score=84.90 Aligned_cols=42 Identities=43% Similarity=0.734 Sum_probs=38.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCCCCcEee
Confidence 45799999999999999999999999 7999999999999764
No 242
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.07 E-value=5.2e-06 Score=84.71 Aligned_cols=42 Identities=31% Similarity=0.680 Sum_probs=39.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceee
Confidence 45789999999999999999999999 6999999999999775
No 243
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.06 E-value=4.3e-06 Score=89.47 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
...++|+|||||+|||+||++|++.|+ +|+|+|+.+..|+-
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence 356799999999999999999999999 69999998765553
No 244
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.05 E-value=0.0034 Score=61.31 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVL 255 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l 255 (496)
...++..|++.+.+ .|++++.+++|++|..+++++. |.+.+| ++.||.||+|+.+..-
T Consensus 136 p~~l~~~l~~~~~~------~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 136 PRALLKALEKALEK------LGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred hHHHHHHHHHHHHH------cCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 56788888888777 7999999999999998888765 788777 8999999999998654
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.05 E-value=3.7e-05 Score=78.37 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=34.7
Q ss_pred cccceeeCceeEEEEEcCCceEEEeC-CCcEEE--cCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTE-DGCVYE--ANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~--ad~VI~A~p~~ 253 (496)
.|++++++++|++|+.+++.+.+... +|++++ +|++|+|++..
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 57889999999999988887777642 355666 99999999864
No 246
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2e-05 Score=74.79 Aligned_cols=223 Identities=19% Similarity=0.313 Sum_probs=121.5
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC---------------------CcEEeec
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG---------------------GVSVELG 59 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~---------------------g~~~d~G 59 (496)
|++ .+||+|+|-|+.-...+-.|+..|. +|+.+++++..||-.+|.+.. .+.+|+-
T Consensus 1 mde--eyDvivlGTgl~ecilS~~Ls~~gk-kVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLi 77 (440)
T KOG1439|consen 1 MDE--EYDVIVLGTGLTECILSGALSVDGK-KVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLI 77 (440)
T ss_pred CCC--ceeEEEEcCCchhheeeeeeeecCc-EEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhc
Confidence 544 4999999999999999999999999 699999999999988885421 1334554
Q ss_pred ceEEecCCCCCCChHHHHHHhcCCccccccCCCcceEEEcCCCcc--cChhHHHH-------HHH-HHHHHHHHHhcc--
Q 010995 60 AGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKI--IPSGVAAD-------SYK-KAVESAIANLKN-- 127 (496)
Q Consensus 60 ~~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~-------~~~-~~~~~~~~~~~~-- 127 (496)
+.++. ....+..++-+.|+..... +.......+...|+. +|....+. ++. +.+..+.....+
T Consensus 78 PK~lm-----An~~Lvk~Li~T~V~~YL~-fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~ 151 (440)
T KOG1439|consen 78 PKFLM-----ANGELVKILIHTGVTRYLE-FKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYD 151 (440)
T ss_pred hHhhh-----ccchHHHHHHHhchhhheE-EEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhh
Confidence 55444 3455677777778776652 222212233345555 33222111 111 111111111111
Q ss_pred ------cccc---chhHHHHHHhhh------cCCC------CCC----ChHHHHHHHHHhhccccccCCcccccccCCcc
Q 010995 128 ------LEAT---NSNIGEVIKAAT------ELPS------SPK----TPLELAIDFILHDFEMAEVEPISTYVDFGERE 182 (496)
Q Consensus 128 ------~~~~---~~~~~~~~~~~~------~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (496)
+... ...++++++.+. .+.+ ... .+....++-+.. -..++..++...
T Consensus 152 e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~--------Y~~S~~~yg~~~ 223 (440)
T KOG1439|consen 152 EEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILL--------YVRSFARYGKSP 223 (440)
T ss_pred hhccccccccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHH--------HHHHHhhcCCCc
Confidence 1111 113444444311 0000 000 000000000000 011233466655
Q ss_pred eeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE--EEeCCCcEEEcCEEEE
Q 010995 183 FLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT--VKTEDGCVYEANYVIL 248 (496)
Q Consensus 183 ~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~--V~~~~G~~~~ad~VI~ 248 (496)
+.++..|...|++.+++.--- -|++..+|+++.+|....++.. |... ++...++.||+
T Consensus 224 -ylyP~yGlgEL~QgFaRlsAv------yGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k~vi~ 283 (440)
T KOG1439|consen 224 -YLYPLYGLGELPQGFARLSAV------YGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCKKVIC 283 (440)
T ss_pred -ceecccCcchhhHHHHHHhhc------cCceeecCCceeeeeccCCccEEEEecC-CceeecceEEe
Confidence 346678999999999876332 6999999999999998544433 4433 34556666665
No 247
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.03 E-value=5.1e-06 Score=85.23 Aligned_cols=42 Identities=31% Similarity=0.485 Sum_probs=36.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee------CCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA------SDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa------~~~~GGr~~ 47 (496)
..+||+|||||++|++||..|++.|. +|+|+|+ ...+||.|.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~-~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGL-KVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCC-eEEEEecccCCCCCCCcCCccc
Confidence 47899999999999999999999999 6999998 356777664
No 248
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.03 E-value=7.2e-05 Score=70.64 Aligned_cols=43 Identities=28% Similarity=0.439 Sum_probs=40.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..+||+|||+|+.|-.||...++.|. +-..+|++..+||.|-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl-kTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL-KTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc-eeEEEeccCccCceeee
Confidence 46999999999999999999999999 69999999999997764
No 249
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.03 E-value=5.9e-06 Score=85.10 Aligned_cols=42 Identities=26% Similarity=0.518 Sum_probs=36.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC--------CCCeEEEe
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD--------RIGGRVRN 48 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~--------~~GGr~~t 48 (496)
++||+|||||.+|++||..|+++|. +|+|+|+.. ++||.|-.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~-~V~lie~~~~~~~~~~~~~GG~C~n 54 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK-KVALFDYVKPSTQGTKWGLGGTCVN 54 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-eEEEEeccCCCCccccccccceecc
Confidence 6899999999999999999999999 699999631 48888743
No 250
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.00 E-value=7e-06 Score=91.24 Aligned_cols=42 Identities=24% Similarity=0.559 Sum_probs=39.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
.+||+|||||+|||+||..|++.|+ +|+|+|+.+++||.+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGA-RVILVDEQPEAGGSLLS 204 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCCCeeec
Confidence 5799999999999999999999999 69999999999998864
No 251
>PLN02507 glutathione reductase
Probab=97.99 E-value=7.8e-06 Score=84.12 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=37.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee---------CCCCCeEEEe
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEA---------SDRIGGRVRN 48 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa---------~~~~GGr~~t 48 (496)
++||+|||||.+|++||..+++.|. +|+|+|+ .+.+||.|-.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~-~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGA-KVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCcccccccCCCccceeec
Confidence 4899999999999999999999999 6999996 3678888754
No 252
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.98 E-value=7.6e-06 Score=86.28 Aligned_cols=42 Identities=36% Similarity=0.624 Sum_probs=39.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||+|+|||+||-.|.+.|+ .|+|+|+++|+||.+.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh-~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCc-EEEEEEecCCcCceee
Confidence 45789999999999999999999999 6999999999999876
No 253
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.98 E-value=9.8e-06 Score=83.08 Aligned_cols=41 Identities=29% Similarity=0.575 Sum_probs=38.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
.++|+|||||++||+||..|+++|+ +|+|+|+.+++||.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGH-TVTVFEREDRCGGLLM 183 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCCCceee
Confidence 4799999999999999999999999 6999999999999775
No 254
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.97 E-value=8.4e-06 Score=80.64 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=33.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
.||+|||||++|+.||+.|++.|+ +|+|+|+++..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeccccccC
Confidence 479999999999999999999999 6999999877654
No 255
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.96 E-value=1.2e-05 Score=80.66 Aligned_cols=43 Identities=33% Similarity=0.583 Sum_probs=39.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..+|++|||||.+|.+||..+++.|.+ |.|+|+...+||.|-.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~k-valvE~~~~lGGtCln 45 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLK-VALVEKGERLGGTCLN 45 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCC-EEEEeecCCcCceEEe
Confidence 579999999999999999999999995 9999999899997764
No 256
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.94 E-value=0.00021 Score=70.33 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCC-ce---EEEeCCC--cEEEcCEEEEecC-hHHHhc
Q 010995 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN-GV---TVKTEDG--CVYEANYVILSAS-IGVLQS 257 (496)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v---~V~~~~G--~~~~ad~VI~A~p-~~~l~~ 257 (496)
..+...|.+.+.++ .+++|+.++.+.++..+++ .+ .+...++ .++.++.||+|+. ...+.+
T Consensus 133 ~~I~~~L~~~v~~~-----p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 133 KEIMTALLKKVRNR-----PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred HHHHHHHHHHHhcC-----CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence 45777777777655 7899999999999988887 44 3333333 4688999999985 455554
No 257
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.93 E-value=1.2e-05 Score=82.21 Aligned_cols=43 Identities=26% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeC--------CCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEAS--------DRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~--------~~~GGr~~t 48 (496)
+.+||+|||||.+|..||..+++. |. +|+|+|+. +.+||.|-.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~-~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK-RVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC-EEEEEecccCccccccCCccCeecC
Confidence 579999999999999999999997 89 69999984 578997764
No 258
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.91 E-value=0.0001 Score=73.91 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=35.7
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|+. ++.+.|.+.+|+++.+|.||++++..
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 5899999999999986 55667888888899999999988653
No 259
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.90 E-value=1.5e-05 Score=83.48 Aligned_cols=42 Identities=36% Similarity=0.597 Sum_probs=38.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
...+|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.++
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeee
Confidence 45789999999999999999999999 6999999999999764
No 260
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.88 E-value=2.7e-05 Score=72.03 Aligned_cols=42 Identities=36% Similarity=0.667 Sum_probs=36.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC--CCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD--RIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~--~~GGr~~ 47 (496)
...||||||||++||.||.+|+++|. +|+|+|... .+||.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~-~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGK-RVLILDQEGEQNLGGQAF 47 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCc-eEEEEcccccccccceee
Confidence 46899999999999999999999999 699998864 4676543
No 261
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.88 E-value=2.4e-05 Score=58.72 Aligned_cols=34 Identities=41% Similarity=0.728 Sum_probs=31.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
+|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchh
Confidence 48999999999999999999999 79999998865
No 262
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.86 E-value=4.9e-06 Score=71.80 Aligned_cols=67 Identities=30% Similarity=0.496 Sum_probs=49.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL 83 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl 83 (496)
..||+|||||-+||+|||..+++ .. +|.++|++--+||-.+ +|++.|..+. -..+..-+++|+|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdl-kvaIIE~SVaPGGGaW----------LGGQLFSAMv--vRKPAhLFL~Eigv 142 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDL-KVAIIESSVAPGGGAW----------LGGQLFSAMV--VRKPAHLFLQEIGV 142 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCc-eEEEEEeeecCCCccc----------ccchhhhhhh--hcChHHHHHHHhCC
Confidence 46999999999999999999976 45 6999999988888554 4445444321 23344456778887
Q ss_pred cc
Q 010995 84 RT 85 (496)
Q Consensus 84 ~~ 85 (496)
..
T Consensus 143 pY 144 (328)
T KOG2960|consen 143 PY 144 (328)
T ss_pred Cc
Confidence 53
No 263
>PLN02546 glutathione reductase
Probab=97.86 E-value=1.7e-05 Score=82.28 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=36.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee---------CCCCCeEEEe
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEA---------SDRIGGRVRN 48 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa---------~~~~GGr~~t 48 (496)
.+||+|||||.+|+.||..+++.|. +|+|+|+ ...+||.|-.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGA-SAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccccccccccCCCccCcccC
Confidence 4899999999999999999999999 6999996 2457776653
No 264
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.84 E-value=2.8e-05 Score=76.62 Aligned_cols=43 Identities=30% Similarity=0.427 Sum_probs=39.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
..++|+|||||.+||++|..|++.|+ +|+|+|+.+.+||.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeee
Confidence 45699999999999999999999999 69999999999997753
No 265
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.84 E-value=0.00017 Score=71.87 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=37.1
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~ 252 (496)
.|++++++++|++|..+++++.|.+.+|+++.+|.||+|++.
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 588999999999999877777788888889999999999864
No 266
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00021 Score=70.34 Aligned_cols=41 Identities=32% Similarity=0.359 Sum_probs=33.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEE
Q 010995 6 RSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRV 46 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~ 46 (496)
+++|+|||+|.+|++.|.+|.+.- -..|.|+|.++..|+-+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 478999999999999999998862 11399999999887633
No 267
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.83 E-value=1.2e-05 Score=77.26 Aligned_cols=35 Identities=37% Similarity=0.587 Sum_probs=30.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCCC
Q 010995 7 SPVIIIGAGVSGISAGKILAENG-IEDILILEASDRI 42 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~~ 42 (496)
+|+||||+|.+|..+|.+|+++| . +|+|||+.++.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~-~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNK-KVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS--EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCC-cEEEEEccccC
Confidence 69999999999999999999997 6 69999997643
No 268
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.81 E-value=0.00023 Score=70.97 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
...++..|.+.+. .|++|+++++|++|+.+++++.|++.+|..+.||+||+|+.+..
T Consensus 134 p~~~~~~l~~~~~-------~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 134 PPQLCRALLAHAG-------IRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred hHHHHHHHHhccC-------CCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 4678888887765 37899999999999998888889998887799999999998764
No 269
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.80 E-value=2.2e-05 Score=70.63 Aligned_cols=32 Identities=47% Similarity=0.701 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
||+|||||+|||+||..|++.|. +|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence 69999999999999999999999 799998754
No 270
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.80 E-value=2.5e-05 Score=82.18 Aligned_cols=43 Identities=37% Similarity=0.574 Sum_probs=38.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GGr~~t 48 (496)
..+||+|||||.+|..||..+++.|. +|+|+|+. +.+||.|-.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~-kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGL-KVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCccccceeE
Confidence 36899999999999999999999999 69999974 478997764
No 271
>PRK13984 putative oxidoreductase; Provisional
Probab=97.78 E-value=3.2e-05 Score=81.91 Aligned_cols=42 Identities=33% Similarity=0.595 Sum_probs=38.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
..++|+|||||.+||+||+.|+++|+ +|+|+|+.+.+||...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEe
Confidence 46789999999999999999999999 7999999999999765
No 272
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.77 E-value=0.0003 Score=76.59 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=35.6
Q ss_pred cccceeeCceeEEEEEcC--CceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSR--NGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~--~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++|++++.|++|..++ ....|.+.+|+++.+|.||+|++..
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 799999999999998653 2345778889899999999998753
No 273
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.77 E-value=2.8e-05 Score=79.66 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=35.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
+||+|||+|++|+++|+.|+++|+ +|+|+|++...||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~-~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGL-KVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCC-eEEEEeccCccCC
Confidence 699999999999999999999999 6999999988876
No 274
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.76 E-value=0.00045 Score=67.51 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=47.7
Q ss_pred ceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEE-EEcCCc---eEEEeCC--C-cEEEcCEEEEecChHH
Q 010995 182 EFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVREL-QHSRNG---VTVKTED--G-CVYEANYVILSASIGV 254 (496)
Q Consensus 182 ~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I-~~~~~~---v~V~~~~--G-~~~~ad~VI~A~p~~~ 254 (496)
......+||..++++.|.+. .+.++ +|++|++| ...+++ +.|++.+ + ..-.+|.||+|+|...
T Consensus 118 ~gl~sV~GGN~qI~~~ll~~---------S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 118 GGLWSVEGGNWQIFEGLLEA---------SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred CCceEecCCHHHHHHHHHHH---------ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 34456689999999999998 78899 99999999 444433 3454433 2 2345799999999964
Q ss_pred Hh
Q 010995 255 LQ 256 (496)
Q Consensus 255 l~ 256 (496)
..
T Consensus 188 ~~ 189 (368)
T PF07156_consen 188 SF 189 (368)
T ss_pred cc
Confidence 43
No 275
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.72 E-value=0.00038 Score=71.37 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=37.0
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCC--cEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDG--CVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VI~A~p~~~ 254 (496)
.|++++++++|++|+.+++++.+.+.+| +++.+|.||+|++...
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence 5899999999999998888888777666 4799999999987543
No 276
>PRK02106 choline dehydrogenase; Validated
Probab=97.69 E-value=4.5e-05 Score=79.96 Aligned_cols=36 Identities=36% Similarity=0.521 Sum_probs=33.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDR 41 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~ 41 (496)
..+|+||||||.+|+.+|..|++ .|+ +|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~-~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDV-SVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCC-eEEEecCCCc
Confidence 46899999999999999999999 799 6999999853
No 277
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.68 E-value=4.6e-05 Score=78.18 Aligned_cols=41 Identities=32% Similarity=0.585 Sum_probs=35.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC--------CCCeEEE
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD--------RIGGRVR 47 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~--------~~GGr~~ 47 (496)
.+||+|||||.+|+.||..+++.|. +|+|+|+.. .+||.|-
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~-~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA-KVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCCCcceecccccc
Confidence 5899999999999999999999999 699999731 4777654
No 278
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.68 E-value=4.7e-05 Score=71.93 Aligned_cols=34 Identities=35% Similarity=0.602 Sum_probs=31.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
...||||||||++|-+.|+.|++.|. +|.|+|+.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGR-rVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGR-RVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCc-EEEEEecc
Confidence 46899999999999999999999999 69999985
No 279
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=0.00043 Score=70.98 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=36.7
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p~~~ 254 (496)
.|+++++|++|++|+.+++++.+.+.+| +++.+|.||+|++...
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 5899999999999998777777776655 6799999999987543
No 280
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.67 E-value=4.7e-05 Score=70.47 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=30.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
++||+|||||++||+||..|+++|. ++.|+-..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk-~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGK-RCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCC-cEEEEeCC
Confidence 6899999999999999999999999 68888653
No 281
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.66 E-value=4.7e-05 Score=70.69 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=33.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCCCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAEN----GIEDILILEASDRI 42 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~~~ 42 (496)
+.++||+|||||.+|++.||.|+++ |+ +|+|+|+.+..
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl-~VvVVErddty 125 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGL-NVVVVERDDTY 125 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCc-eEEEEeccCcc
Confidence 3578999999999999999999874 78 79999998743
No 282
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.64 E-value=0.00013 Score=68.70 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=48.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCCCCCeEEEeeee--CCcEEeecceEEecCCCCCCChHHHHH
Q 010995 5 SRSPVIIIGAGVSGISAGKILAEN----GIEDILILEASDRIGGRVRNEKF--GGVSVELGAGWIAGVGGKESNPVWELA 78 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~~~GGr~~t~~~--~g~~~d~G~~~~~~~~~~~~~~~~~l~ 78 (496)
.++.+-|||+|+|||++|.+|.+. |. ++-++|.-+..||..-.... .|+.+--| +-+.. ....+|+|+
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~-~IHilEelpl~GGSlDG~~~p~~GfV~RGG-RemEn----hfEc~WDlf 94 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGK-RIHILEELPLAGGSLDGAGSPHHGFVVRGG-REMEN----HFECLWDLF 94 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCc-eeEeeecCcccCCCCCCCCCcccceeecCc-HHHHH----HHHHHHHHH
Confidence 457799999999999999999886 45 79999999999997665332 24444333 22222 344566666
Q ss_pred Hh
Q 010995 79 SK 80 (496)
Q Consensus 79 ~~ 80 (496)
+.
T Consensus 95 rs 96 (587)
T COG4716 95 RS 96 (587)
T ss_pred hc
Confidence 53
No 283
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.62 E-value=5.4e-05 Score=77.38 Aligned_cols=38 Identities=26% Similarity=0.592 Sum_probs=34.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
+|+|||||.+|++||..|++.|. +|+|+|+. .+||.|-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~-~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK-NVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC-cccccCC
Confidence 79999999999999999999999 69999986 4777655
No 284
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.61 E-value=6.8e-05 Score=77.39 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=37.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
..++||+|||||.|||.||..++++|. +|+|+|+....+|..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~-~V~l~~K~~~~rg~t 45 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGL-KVALLSKAPPKRGHT 45 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCC-cEEEEEccccCCCch
Confidence 467899999999999999999999999 699999988877533
No 285
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.59 E-value=0.00026 Score=77.02 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=34.8
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|+.++. .|.+.+|+++.+|++|+|+...
T Consensus 67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence 5889999999999987654 5667788889999999999864
No 286
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.56 E-value=0.00098 Score=67.01 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=37.0
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCc--EEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGC--VYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VI~A~p~~ 253 (496)
.|.+++++++|++++..++++.+.+.+|+ ++++|.|++|+.-.
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 47899999999999998887888887775 68999999999653
No 287
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00011 Score=69.30 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=39.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeEEEeee
Q 010995 5 SRSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGRVRNEK 50 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr~~t~~ 50 (496)
..+.|+|||+|+||+++|++|.++ +. +|+|+|+.+.++|.++..-
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~-~Vdi~Ek~PvPFGLvRyGV 65 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNA-HVDIFEKLPVPFGLVRYGV 65 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCC-eeEeeecCCcccceeeecc
Confidence 456899999999999999999885 57 7999999999999888543
No 288
>PRK07846 mycothione reductase; Reviewed
Probab=97.54 E-value=0.00085 Score=68.35 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=37.1
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
.|++++++++|++|+.+++++.|.+.+|+++.+|.||+|++...
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCcc
Confidence 36789999999999887777778887888899999999987543
No 289
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.53 E-value=0.001 Score=68.08 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=37.2
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|+.+++++.|.+.+|+++.+|.||++++..
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC
Confidence 5899999999999987777788877788889999999998653
No 290
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.52 E-value=0.0011 Score=67.52 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=34.6
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|+.+++.+.+.+ +|+++.+|.||+|+...
T Consensus 211 ~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 211 DGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRK 252 (438)
T ss_pred cCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCC
Confidence 5899999999999988766676665 45689999999998653
No 291
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.51 E-value=0.0011 Score=67.54 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=35.1
Q ss_pred cccceeeCceeEEEEEcCCc-eEEEeCCC-cEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNG-VTVKTEDG-CVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~G-~~~~ad~VI~A~p~~ 253 (496)
.|+++++|+.|++|+.++++ +.|.+.+| +.+.+|.||++++..
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCC
Confidence 58999999999999876544 66777777 579999999998754
No 292
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.48 E-value=0.0014 Score=66.81 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=37.0
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|+.+++++.|.+.+|+++.+|.||+|++..
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCC
Confidence 5899999999999988777777777788889999999998753
No 293
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.47 E-value=0.00093 Score=72.75 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=35.5
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~ 252 (496)
.|++|++++.|++|..++....|++.+|+++.+|.||++++.
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 689999999999998655445578888989999999999875
No 294
>PLN02507 glutathione reductase
Probab=97.46 E-value=0.0016 Score=67.23 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=37.4
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|+++++++.|++|+.+++++.|.+.+|+++.+|.||++++..
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 5899999999999998777777888788889999999998754
No 295
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.46 E-value=0.00034 Score=68.12 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=27.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENG-IEDILILEASDR 41 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~ 41 (496)
.+|+|+||.|+++|+.|..|.+.+ . +++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~-~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDL-KALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCC-CEEEEecCCC
Confidence 479999999999999999999987 7 6999998764
No 296
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.46 E-value=4.7e-05 Score=69.10 Aligned_cols=49 Identities=29% Similarity=0.569 Sum_probs=39.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC------CCcEEEEeeCCCCCeEEEeeeeCCcEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENG------IEDILILEASDRIGGRVRNEKFGGVSV 56 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G------~~~V~vlEa~~~~GGr~~t~~~~g~~~ 56 (496)
..++|+||||||.|.++||+|++++ . +|+++|.+...||. |-..+|+..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~-~ItifEs~~IA~ga--SGkasgfLa 63 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGEL-DITIFESKEIAGGA--SGKASGFLA 63 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCce-eEEEEeeccccccc--ccccchhhH
Confidence 3578999999999999999999987 6 79999999888873 333444433
No 297
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.45 E-value=0.0014 Score=67.42 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=31.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||||.+|+-+|..|++.|. +|+|+|+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA-EVTILEALP 216 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence 4689999999999999999999999 699999754
No 298
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.44 E-value=0.0015 Score=66.97 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||||..|+-+|..|++.|. +|+|+|+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~~ 205 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV-DVTIVEFLD 205 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4689999999999999999999999 699998654
No 299
>PRK06370 mercuric reductase; Validated
Probab=97.43 E-value=0.0016 Score=66.75 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=31.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~~ 205 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS-EVTVIERGPR 205 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCC
Confidence 4689999999999999999999999 6999998654
No 300
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00015 Score=75.25 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=33.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..++|+||||+|.+|...|..|++.|+ +|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~-~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCC-eEEEEeCCC
Confidence 467999999999999999999999999 699999963
No 301
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.0041 Score=62.15 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
..+||+|||||.||.-||...++.|. +++|+=-+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~-ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGA-KTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCC-eEEEEEcC
Confidence 45999999999999999999999999 58888654
No 302
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.38 E-value=0.0022 Score=65.46 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=36.6
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|+++++++.|++|+.+++++.|++.+|+++++|.||+|++..
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence 3678999999999998777787877778889999999999754
No 303
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.37 E-value=0.0023 Score=65.73 Aligned_cols=35 Identities=34% Similarity=0.739 Sum_probs=31.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..+|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~-~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV-EVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEecCc
Confidence 4689999999999999999999999 6999998653
No 304
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.34 E-value=0.0028 Score=64.81 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~ 203 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT-KVTIVEMAP 203 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4689999999999999999999999 699999755
No 305
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.33 E-value=0.0024 Score=65.41 Aligned_cols=35 Identities=31% Similarity=0.586 Sum_probs=31.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..+|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~ 200 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS-EVTILQRSDR 200 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCc
Confidence 4689999999999999999999999 6999998653
No 306
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.0027 Score=65.02 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=31.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..+|+|||||..|+-.|..|++.|. +|+|+|+.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 4789999999999999999999999 6999997553
No 307
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.31 E-value=0.00031 Score=71.61 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=33.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
+++||+|||||.+|..||. +++|. +|+|+|+ +.+||.|-.
T Consensus 1 ~~yD~vvIG~G~~g~~aa~--~~~g~-~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDP--RFADK-RIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CCcCEEEECCCHHHHHHHH--HHCCC-eEEEEeC-CCCCCeeec
Confidence 3689999999999999864 45799 6999997 578997753
No 308
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.29 E-value=0.0032 Score=64.09 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=35.4
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|+.+++++.+.+.++ ++.+|.||+|++..
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCC
Confidence 6899999999999998777777777665 68999999998644
No 309
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.27 E-value=0.00036 Score=69.89 Aligned_cols=42 Identities=7% Similarity=0.169 Sum_probs=34.1
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
.|+++++++.|..|..++. .|.+.+|+++.+|++|+|+....
T Consensus 71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 4788999999999988754 45556788899999999998654
No 310
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.25 E-value=0.00034 Score=71.08 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=31.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCC
Q 010995 7 SPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIG 43 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~G 43 (496)
.+|||||||.+|++||..|++. +. +|+|+|+++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~-~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKES-DIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCC-CEEEEECCCCcc
Confidence 4799999999999999999987 56 699999998654
No 311
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.25 E-value=0.0029 Score=64.11 Aligned_cols=34 Identities=32% Similarity=0.586 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||||.+|+-+|..|++.|. +|+++++++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 170 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK-NVTLIHRSE 170 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECCc
Confidence 4689999999999999999999999 699999754
No 312
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.24 E-value=0.003 Score=64.46 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||||.+|+-+|..|++.|. +|+++++++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGK-NVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-cEEEEeCCc
Confidence 4689999999999999999999999 699998754
No 313
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.24 E-value=0.0046 Score=61.47 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=37.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
...||+|||||.+|-.||.--+-+|. +|.++|+.|..-|..+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGL-ktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGL-KTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccc-eeEEEecccccCCccc
Confidence 46899999999999999999999999 6999999998766443
No 314
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.24 E-value=0.0024 Score=62.64 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC-cEEEcCEEEEecCh
Q 010995 188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG-CVYEANYVILSASI 252 (496)
Q Consensus 188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~A~p~ 252 (496)
.+-.+.+++.|...+.+ .|++|+++++|++| +++++.|.+.++ ..++||+||+|+.-
T Consensus 82 S~~A~sVv~~L~~~l~~------~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAE------QGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCCHHHHHHHHHHHHHH------CCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 45688899999998887 79999999999999 344577776543 46999999999975
No 315
>PRK07846 mycothione reductase; Reviewed
Probab=97.24 E-value=0.00031 Score=71.56 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=32.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~ 47 (496)
.+||+|||||.+|.+||.. +.|. +|+|+|+ +.+||.|-
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~-~V~lie~-~~~GGtC~ 38 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADK-RIAIVEK-GTFGGTCL 38 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCC-eEEEEeC-CCCCCccc
Confidence 3899999999999999866 4699 6999997 56888665
No 316
>PRK14727 putative mercuric reductase; Provisional
Probab=97.21 E-value=0.0044 Score=63.78 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=36.2
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
.|++++++++|++|+.+++++.|.+.++ ++.+|.||+|++...
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCC
Confidence 5899999999999998777777777665 689999999997643
No 317
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.17 E-value=0.0045 Score=63.52 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=35.3
Q ss_pred cccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|+++++++.|++|+.++++ +.|.+.+|+++.+|.||+|+...
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence 58999999999999876544 55777777789999999998743
No 318
>PRK14694 putative mercuric reductase; Provisional
Probab=97.10 E-value=0.0066 Score=62.32 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=35.2
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
.|++++++++|++|+.+++.+.+.+.++ ++.+|.||+|++...
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCC
Confidence 5899999999999988776666776555 799999999986543
No 319
>PRK13748 putative mercuric reductase; Provisional
Probab=97.09 E-value=0.0054 Score=64.58 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=35.4
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++|+++++|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCC
Confidence 5899999999999988777777777665 79999999998754
No 320
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.09 E-value=0.0064 Score=62.78 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=36.8
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~ 254 (496)
.|+++++++.|++|+..++.+.|.+.+|+++.+|.||++++...
T Consensus 235 ~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 235 QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCC
Confidence 58999999999999876666777777888899999999987543
No 321
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.08 E-value=0.00056 Score=69.13 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=32.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
.++++|||||||.+|+++|..|.+.++ +|+|+|++++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCCC
Confidence 457899999999999999999987788 6999998774
No 322
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.99 E-value=0.0068 Score=63.03 Aligned_cols=58 Identities=26% Similarity=0.132 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe---CCC--cEEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT---EDG--CVYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~G--~~~~ad~VI~A~p~~~ 254 (496)
-..++..+++.+.+ .|++|+++++|++|..+++++. |++ .+| .++.|+.||+|+.+..
T Consensus 127 p~~l~~al~~~A~~------~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQE------HGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHH------cCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 45677777777766 7999999999999998877654 443 234 3689999999998754
No 323
>PLN02785 Protein HOTHEAD
Probab=96.94 E-value=0.00097 Score=69.82 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=31.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+||||||.+|+.+|..|++ +. +|+|||+..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~-~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NF-SVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CC-cEEEEecCC
Confidence 46999999999999999999999 57 699999975
No 324
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.93 E-value=0.00089 Score=67.45 Aligned_cols=40 Identities=35% Similarity=0.725 Sum_probs=36.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~ 46 (496)
..+|+|||+|..||.+|..|+++|+ +|+|+|+.+++||+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~-~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK-KVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcccccchhh
Confidence 4789999999999999999999999 699999999988743
No 325
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.00086 Score=62.31 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=32.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
...|.|||||+||--|||.++++|+ .|.|+|-++.-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv-~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGV-PVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCC-cEEEEEccccc
Confidence 4579999999999999999999999 69999987643
No 326
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.87 E-value=0.014 Score=60.12 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=34.4
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p~~ 253 (496)
.|++|++++.|++|...++++.|+..++ +++.+|.||+|++..
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence 5899999999999987766666665444 379999999999753
No 327
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0077 Score=58.97 Aligned_cols=40 Identities=38% Similarity=0.537 Sum_probs=32.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCe
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGG 44 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GG 44 (496)
...+||||||||.||.-||..-++-|. +-++|-.+ +.+|-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga-~TlLlT~~ld~Ig~ 66 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGA-RTLLLTHNLDTIGE 66 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCC-ceEEeecccccccc
Confidence 356799999999999999999999999 57777554 44443
No 328
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.77 E-value=0.002 Score=64.16 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=32.0
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|+.++. .|.+ +++++.+|++|+|+...
T Consensus 71 ~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 71 FNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred CCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCC
Confidence 5788999999999988665 3444 45689999999999864
No 329
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.0021 Score=60.20 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=40.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t 48 (496)
.+.+|-.|||||-.|+++|++.++.|. +|.|+|..-++||.|-.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GA-kv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGA-KVALCELPFGLGGTCVN 61 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCc-eEEEEecCCCcCceEEe
Confidence 457899999999999999999999999 69999999899998765
No 330
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.64 E-value=0.019 Score=58.12 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=31.6
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~ 252 (496)
.|++++++++|++|..+ .|.+.+|+++.+|.||++++.
T Consensus 241 ~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCC
Confidence 69999999999999743 355678889999999999863
No 331
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0023 Score=59.78 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEA 38 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa 38 (496)
...+|.||||||.+||+||.+.+..|. +|.+|+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~-kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGA-KVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCC-cEEEEee
Confidence 356899999999999999999999999 6999997
No 332
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.30 E-value=0.0038 Score=61.81 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHC---CCCcEEEEeeCCC
Q 010995 8 PVIIIGAGVSGISAGKILAEN---GIEDILILEASDR 41 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~---G~~~V~vlEa~~~ 41 (496)
+|||||||.+|+.+|..|.++ +. +|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~-~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGV-RVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCC-EEEEECCCCC
Confidence 599999999999999999754 57 7999998765
No 333
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.10 E-value=0.0071 Score=62.32 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=31.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|||+|.+|+++|..|+++|+ +|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 5689999999999999999999999 699999765
No 334
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.94 E-value=0.0081 Score=51.52 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+|+|||||-.|.+.|..|+++|+ +|+|+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEecc
Confidence 58999999999999999999999 79999764
No 335
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.70 E-value=0.012 Score=60.29 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=31.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
+|.|||.|.+|++||+.|.++|+ +|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch
Confidence 59999999999999999999999 69999987654
No 336
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.69 E-value=0.014 Score=51.26 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=27.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
+|.|||||..|..-|..++.+|+ +|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence 48999999999999999999999 799999753
No 337
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.022 Score=50.28 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=36.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC---C-CCCeEEEeee
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS---D-RIGGRVRNEK 50 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~---~-~~GGr~~t~~ 50 (496)
+.+|+|||+|+++-+||.+++++-. +-+|+|.- + -+||.+.|.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarael-kPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAEL-KPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhccc-CceEEeeeeccCcCCCceeeeee
Confidence 4589999999999999999999999 59999973 2 3577777644
No 338
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.008 Score=56.46 Aligned_cols=39 Identities=28% Similarity=0.573 Sum_probs=30.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR 45 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr 45 (496)
...+||.|||||++|-+||.+-+++|++ --|+ .+|+||.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiR-TGl~--aerfGGQ 247 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIR-TGLV--AERFGGQ 247 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcch-hhhh--hhhhCCe
Confidence 3578999999999999999999999994 3333 1355553
No 339
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.48 E-value=0.014 Score=56.26 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=45.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCC--CCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHH
Q 010995 5 SRSPVIIIGAGVSGISAGKILAEN----GIEDILILEASD--RIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELA 78 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~--~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~ 78 (496)
..+||+|||||+.|++.|..|... -. +|+|+|+.+ ..|+ +... +.--..+.. ..+.-..++
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~-kv~Lld~~~s~kl~~----~~~~----~~f~Nrvss----~s~~s~~~f 101 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDK-KVLLLDAGDSPKLGD----FKPS----ETFSNRVSS----ISPASISLF 101 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchh-eeeEEecccCccccc----cccC----ccccceeec----CCcchHHHH
Confidence 478999999999999999999864 34 699999984 3332 2211 111222332 445556677
Q ss_pred HhcCCcccc
Q 010995 79 SKSGLRTCF 87 (496)
Q Consensus 79 ~~lgl~~~~ 87 (496)
+.+|..+..
T Consensus 102 k~~~awd~i 110 (481)
T KOG3855|consen 102 KSIGAWDHI 110 (481)
T ss_pred HhcCHHHHh
Confidence 777765544
No 340
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.46 E-value=0.016 Score=59.33 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=32.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRI 42 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~ 42 (496)
...+|.||||||-||...|..|++. .. +|+||||....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~-~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNW-SVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCc-eEEEEecCCCC
Confidence 3579999999999999999999997 46 69999996544
No 341
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.46 E-value=0.013 Score=54.09 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=27.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-------CCcEEEEee
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENG-------IEDILILEA 38 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G-------~~~V~vlEa 38 (496)
++.+|+|||+|+.||++|..+.+.+ . +|+|++-
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~-~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVA-KVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcc-eEEEecC
Confidence 4678999999999999999998854 3 5888864
No 342
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.40 E-value=0.029 Score=46.66 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+.++|+|||||-+|-++++.|++.|.++|+|+-|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457899999999999999999999999669999864
No 343
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.37 E-value=0.022 Score=58.40 Aligned_cols=36 Identities=19% Similarity=0.553 Sum_probs=32.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
..+|+|||||..|+-.|..|++.|. +|+|+|+.+++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~i 209 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS-EVDVVEMFDQV 209 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCC
Confidence 3689999999999999999999999 69999987753
No 344
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.025 Score=54.37 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|||+|..|..-|..++.+|+ +|+++|.++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 3679999999999999999999999 799999754
No 345
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.25 E-value=0.027 Score=57.74 Aligned_cols=36 Identities=33% Similarity=0.696 Sum_probs=32.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
.++|+|||||.+|+-.|..|++.|. +|+|+|+++++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGV-KVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Confidence 4689999999999999999999999 69999987654
No 346
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.21 E-value=0.025 Score=52.56 Aligned_cols=44 Identities=39% Similarity=0.629 Sum_probs=36.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC--------CCCCeEEEee
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS--------DRIGGRVRNE 49 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~--------~~~GGr~~t~ 49 (496)
.+.+|+|||||..|.-||....--|- +|+++|.+ +..|||+.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~ 218 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTL 218 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEE
Confidence 45789999999999999999999999 79999987 3456666553
No 347
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.20 E-value=0.027 Score=57.51 Aligned_cols=35 Identities=29% Similarity=0.640 Sum_probs=32.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
+.++|+|||+|.+|+++|..|+++|+ +|+++|..+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 46889999999999999999999999 799999864
No 348
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.20 E-value=0.026 Score=53.69 Aligned_cols=34 Identities=29% Similarity=0.598 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|.|||+|..|..-|..|+++|+ +|+++|.++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 4589999999999999999999999 799999754
No 349
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.16 E-value=0.028 Score=57.63 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=36.4
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~ 253 (496)
.|++++++++|++|+.+++++.+++.+|+++++|.||+|++..
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 5889999999999987777777777778889999999998754
No 350
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.15 E-value=0.026 Score=57.43 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=32.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
..+|+|||||..|+-.|..|++.|. +|+|+|+++++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~~l 183 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL-HPTLIHRSDKI 183 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-cEEEEeccccc
Confidence 4689999999999999999999999 69999987754
No 351
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.03 E-value=0.2 Score=52.64 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-CCceE-EE---eCCCc--EEEcCEEEEecChHH
Q 010995 191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-RNGVT-VK---TEDGC--VYEANYVILSASIGV 254 (496)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~-V~---~~~G~--~~~ad~VI~A~p~~~ 254 (496)
-..|...|.+.+.+ .|++|+.++.++++..+ +++|. |. ..+|+ .+.|+.||+|+.-..
T Consensus 125 G~~i~~~L~~~~~~------~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLK------NGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhc------cCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 45688888877765 69999999999999875 45554 32 24563 578999999997533
No 352
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.99 E-value=0.029 Score=54.03 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=30.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.+|.|||+|..|.+.|..|+++|+ +|+++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 369999999999999999999999 799999864
No 353
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.97 E-value=0.037 Score=48.02 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=28.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
...+|+|+|+|.+|+.||..|...|. +|+++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCC
Confidence 45789999999999999999999999 79999863
No 354
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.89 E-value=0.043 Score=46.62 Aligned_cols=31 Identities=35% Similarity=0.543 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 9 VIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 9 VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
|+|||+|..|...|+.|+++|. +|+++-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc
Confidence 7899999999999999999999 799997644
No 355
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.75 E-value=0.03 Score=49.31 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=26.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
+|+|||.|..||..|..|+++|+ +|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCCh
Confidence 69999999999999999999999 799998643
No 356
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.71 E-value=0.042 Score=57.08 Aligned_cols=34 Identities=38% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~-~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVR-HVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCc-EEEEEEeCC
Confidence 4689999999999999999999999 799998754
No 357
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.70 E-value=0.32 Score=48.19 Aligned_cols=46 Identities=28% Similarity=0.355 Sum_probs=38.9
Q ss_pred cccceeeCceeEEEEEcC-CceE-EEeCCCcEEEcCEEEEecChHHHh
Q 010995 211 LDNRLKLNKVVRELQHSR-NGVT-VKTEDGCVYEANYVILSASIGVLQ 256 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~-~~v~-V~~~~G~~~~ad~VI~A~p~~~l~ 256 (496)
.|+++++++.+.+++.+. +++. |.+.+|+++.||.||+.+.+..+-
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 699999999999998765 4454 999999999999999998776553
No 358
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.62 E-value=0.042 Score=60.23 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=33.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG 43 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G 43 (496)
..+++|||||..|+-+|..|++.|. +|+|+|..+++-
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~-~VtvVe~~~~ll 181 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGV-ETHVIEFAPMLM 181 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeccccch
Confidence 4679999999999999999999999 699999988753
No 359
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.60 E-value=0.044 Score=52.19 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=30.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
..+|+|||+|..|.+.|..|+++|+ +|++++.+
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 3579999999999999999999999 79999864
No 360
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.59 E-value=0.058 Score=52.13 Aligned_cols=38 Identities=42% Similarity=0.557 Sum_probs=32.3
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
|++. +.+|+|||+|..|.+-|..|+++|+ +|+++-++.
T Consensus 1 ~~~~-~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 1 MDSE-TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CCCc-CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 5543 3479999999999999999999999 799998753
No 361
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.56 E-value=0.056 Score=46.65 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=30.8
Q ss_pred CCCCCEEEECCCH-HHHHHHHHHHHCCCCcEEEEeeC
Q 010995 4 TSRSPVIIIGAGV-SGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 4 ~~~~dVvIIGaGi-aGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
...++|+|||+|- +|..+|.+|.+.|. +|+|+.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence 3578999999995 79999999999999 69999864
No 362
>PTZ00058 glutathione reductase; Provisional
Probab=94.54 E-value=0.049 Score=56.86 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..+|+|||||..|+-.|..|++.|. +|+|+|++++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~-~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA-ESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-cEEEEEeccc
Confidence 5789999999999999999999999 6999998664
No 363
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.53 E-value=0.051 Score=57.71 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=32.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
..+|+|||||..|+-.|..|++.|. +|+|+|+.+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~-eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS-EVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC-eEEEEeccCcc
Confidence 4589999999999999999999999 79999997764
No 364
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.50 E-value=0.026 Score=51.13 Aligned_cols=34 Identities=32% Similarity=0.587 Sum_probs=27.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIE-DILILEASDR 41 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~ 41 (496)
+.+||||||||.+||-.|+..-.. +|+++-+++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999986432 6888887653
No 365
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.50 E-value=0.042 Score=52.36 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.+|+|||+|..|...|..|+++|+ +|++++.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 469999999999999999999999 699998754
No 366
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.44 E-value=0.064 Score=47.92 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+..+|+|||+|-.|...|..|++.|+.+++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46789999999999999999999999669999875
No 367
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.33 E-value=0.062 Score=54.80 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=31.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeecC
Confidence 4689999999999999999999999 699998764
No 368
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.29 E-value=0.06 Score=55.97 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|||||.+|+-+|..|++.|. +|+|+++.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~-~Vtlv~~~~ 384 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVK-HVTVLEFAP 384 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEECc
Confidence 4689999999999999999999999 799998754
No 369
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.28 E-value=0.07 Score=47.84 Aligned_cols=34 Identities=15% Similarity=0.465 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.++|+|||||-+|+..+..|.+.|. +|+|+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 56789999999999999999999999 79999764
No 370
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.27 E-value=0.053 Score=55.22 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=32.4
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
|.+-..++|+|+|.|.+|.+||..|.+ |. +|+|.|.+
T Consensus 1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~-~v~v~D~~ 37 (454)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQN-KY-DVIVYDDL 37 (454)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHhC-CC-EEEEECCC
Confidence 666567899999999999999999995 99 79999954
No 371
>PRK10262 thioredoxin reductase; Provisional
Probab=94.25 E-value=0.068 Score=51.87 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=31.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||+|.+|+-.|..|++.|. +|+++++++
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~-~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEECC
Confidence 5689999999999999999999999 799999864
No 372
>PRK06116 glutathione reductase; Validated
Probab=94.19 E-value=0.067 Score=54.63 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=32.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
..+|+|||+|.+|+-.|..|++.|. +|+++++++++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGS-ETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 4689999999999999999999999 69999988764
No 373
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.19 E-value=0.16 Score=53.06 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=35.6
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI 252 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~ 252 (496)
.|.++++++.+++|..++....|...||..+.||-||.|+.+
T Consensus 200 ~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 200 LGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred hcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc
Confidence 688999999988888755545699999999999999999865
No 374
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.16 E-value=0.074 Score=50.81 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=30.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
..+|.|||+|..|...|..|+++|+ +|++++.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4679999999999999999999999 79999975
No 375
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.10 E-value=0.065 Score=48.87 Aligned_cols=67 Identities=22% Similarity=0.391 Sum_probs=45.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCC-cEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGG-VSVELGAGWIAGVGGKESNPVWELASKSGLRT 85 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g-~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~ 85 (496)
.+++|||+|--|.+.|..|.+.|+ +|+++|..+.. ... ..-+.+.+.+.+ +..-.+.++++|+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~--------~~~~~~~~~~~~~v~g-----d~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEER--------VEEFLADELDTHVVIG-----DATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHH--------HHHHhhhhcceEEEEe-----cCCCHHHHHhcCCCc
Confidence 369999999999999999999999 79999986421 111 011234455543 223345777888765
Q ss_pred cc
Q 010995 86 CF 87 (496)
Q Consensus 86 ~~ 87 (496)
..
T Consensus 67 aD 68 (225)
T COG0569 67 AD 68 (225)
T ss_pred CC
Confidence 43
No 376
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.08 E-value=0.067 Score=56.09 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=32.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
..+|+|||||.+|+-.|..|++.|. +|+++++++++
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~-~Vtli~~~~~~ 178 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYAS-KVTVIVREPDF 178 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCC-EEEEEEeCCcc
Confidence 4689999999999999999999999 79999998753
No 377
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.96 E-value=0.061 Score=50.11 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=32.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+..+|+|||+|-.|..+|..|++.|+.+++|+|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 56899999999999999999999997789999963
No 378
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.91 E-value=0.074 Score=50.53 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=30.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||+|..|.+.|..|+++|+ +|+++|.++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 3579999999999999999999999 799998653
No 379
>PRK12831 putative oxidoreductase; Provisional
Probab=93.89 E-value=0.083 Score=54.05 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..++|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeecC
Confidence 34789999999999999999999999 699998754
No 380
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.049 Score=51.38 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=29.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.+||+|||||-||+-||.-|+---- .|||||=.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~-hVtllEF~ 386 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFA 386 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhh-eeeeeecc
Confidence 46899999999999999999986544 69999943
No 381
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.86 E-value=0.069 Score=44.41 Aligned_cols=34 Identities=35% Similarity=0.572 Sum_probs=30.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.+|+|||+|-.|...|..|++.|+.+++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5689999999999999999999999789999863
No 382
>PLN02546 glutathione reductase
Probab=93.85 E-value=0.086 Score=55.04 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=32.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
..+|+|||||..|+-.|..|++.|. +|+|+|+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~-~Vtlv~~~~~i 287 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKS-DVHVFIRQKKV 287 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEecccc
Confidence 4689999999999999999999999 79999987754
No 383
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.78 E-value=0.27 Score=50.09 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=32.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..++|+|+|.|-+|+++|..|+++|+ +|++.|..+.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~ 39 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELK 39 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 45689999999999999999999999 6999997654
No 384
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.78 E-value=0.075 Score=53.12 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=33.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI 42 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~ 42 (496)
..++|+|+|-|.+|++||..|.+.|. +|++.|.++..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc
Confidence 47889999999999999999999999 69999977654
No 385
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.76 E-value=0.075 Score=54.42 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=31.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|+|.|.+|.+||..|.+.|. +|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLP-AQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCC
Confidence 5689999999999999999999999 699999754
No 386
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.072 Score=50.86 Aligned_cols=33 Identities=27% Similarity=0.607 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.+|.|||+|..|.+.|..|+++|+ +|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999999 799999743
No 387
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.69 E-value=0.12 Score=49.87 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=34.6
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
|+.-+..+|+|||||-.|-+.|+.|+..|+.+|+|+|.++.
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 55556679999999999999999999999635999998654
No 388
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.68 E-value=0.094 Score=51.61 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=30.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||+|..|+-+|..|.+.|.++|+|+++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36899999999999999999999983399998743
No 389
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.61 E-value=0.11 Score=49.83 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|.|||+|..|...|..|+++|+ +|+++|.+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 4679999999999999999999999 799999754
No 390
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.53 E-value=0.13 Score=50.45 Aligned_cols=45 Identities=33% Similarity=0.533 Sum_probs=36.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeC--------CCCCeEEEeeee
Q 010995 6 RSPVIIIGAGVSGISAGKILAENG-IEDILILEAS--------DRIGGRVRNEKF 51 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~--------~~~GGr~~t~~~ 51 (496)
+.+|+|||||-.|.++|+.|++.| . +|+|.+++ ...++++.+...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~-~V~iAdRs~~~~~~i~~~~~~~v~~~~v 54 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDG-EVTIADRSKEKCARIAELIGGKVEALQV 54 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhhccccceeEEe
Confidence 467999999999999999999999 7 79999997 444565555443
No 391
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.53 E-value=0.11 Score=49.34 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=31.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.++|+|||+|-+|-++|+.|++.|.++|+|+++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45689999999999999999999998679999875
No 392
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.50 E-value=0.11 Score=49.65 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~-~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAK-KVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcC-EEEEEEeCc
Confidence 4689999999999999999999998 799999854
No 393
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.49 E-value=0.11 Score=53.53 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=31.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.-.+|.|||+|..|..-|..|+++|+ +|+|+|.+.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 45679999999999999999999999 799999764
No 394
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.48 E-value=0.089 Score=52.88 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|.|||.|..|+..|..|+++|+ +|++++.++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence 4579999999999999999999999 799999754
No 395
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.47 E-value=0.11 Score=50.26 Aligned_cols=34 Identities=24% Similarity=0.568 Sum_probs=30.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|.|||+|..|.+.|..|+++|+ +|++++.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 4679999999999999999999999 699998643
No 396
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.40 E-value=0.12 Score=47.14 Aligned_cols=35 Identities=26% Similarity=0.633 Sum_probs=31.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC--cEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIE--DILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~--~V~vlEa~ 39 (496)
+..+|+|+|||-+|..+|+.|.+.|.+ +|.|++++
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 456899999999999999999999985 69999885
No 397
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.39 E-value=0.62 Score=45.38 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=32.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
...|+|.||-|++-|+.|..|.+.+..+++.||+.+.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 5789999999999999999999986326999998763
No 398
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.35 E-value=0.12 Score=51.10 Aligned_cols=34 Identities=35% Similarity=0.535 Sum_probs=31.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
...+|+|||+|.+|+.+|..|...|. +|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 45679999999999999999999999 69999875
No 399
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.34 E-value=0.069 Score=42.02 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=30.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+.++|+|||||-.|..-+..|.+.|. +|+|+-..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCc
Confidence 357889999999999999999999999 79999775
No 400
>PRK04148 hypothetical protein; Provisional
Probab=93.32 E-value=0.086 Score=43.27 Aligned_cols=34 Identities=21% Similarity=0.539 Sum_probs=30.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..+|++||.| .|.+.|..|++.|+ +|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH
Confidence 4579999999 99999999999999 7999997653
No 401
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.31 E-value=0.13 Score=45.94 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=31.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+.++|+|||||-.|...|..|.+.|. +|+|++..
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 357899999999999999999999999 79999754
No 402
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.23 E-value=0.11 Score=50.82 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=29.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 469999999999999999999999 79999874
No 403
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.22 E-value=0.13 Score=52.58 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=31.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
...+|+|||||..|+-+|..|.+.|.++|+|+++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 357899999999999999999999975699998743
No 404
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.18 E-value=0.084 Score=49.31 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=31.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASD 40 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~ 40 (496)
+..++|.|||||-+|++.|..+.++ |..+|.|+|-.+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4578999999999999999999876 443799999875
No 405
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.16 E-value=0.14 Score=49.20 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+|+|||+|-.|...|+.|++.|. +|+++.++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 469999999999999999999999 79999985
No 406
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.15 E-value=0.11 Score=53.35 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=32.6
Q ss_pred CCCCCCCEEEECCCHHHHH-HHHHHHHCCCCcEEEEeeCC
Q 010995 2 DSTSRSPVIIIGAGVSGIS-AGKILAENGIEDILILEASD 40 (496)
Q Consensus 2 ~~~~~~dVvIIGaGiaGL~-aA~~L~~~G~~~V~vlEa~~ 40 (496)
...+.++|.|||.|-+|++ +|..|.++|+ +|++.|.+.
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~ 41 (461)
T PRK00421 3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKE 41 (461)
T ss_pred CcCCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCC
Confidence 3345678999999999999 5999999999 699999764
No 407
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.92 E-value=0.17 Score=43.30 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=30.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEe
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILE 37 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlE 37 (496)
.+.++|+|||||-.|+.-|..|.+.|. +|+|+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 356889999999999999999999999 799994
No 408
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.84 E-value=0.14 Score=52.47 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=31.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|.|+|.|.+|+++|..|.+.|+ +|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 4689999999999999999999999 699999765
No 409
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.81 E-value=0.22 Score=37.63 Aligned_cols=34 Identities=26% Similarity=0.560 Sum_probs=29.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA 38 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa 38 (496)
..++++|+|+|..|..+|..|.+.|.++|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4678999999999999999999994337999977
No 410
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.78 E-value=0.13 Score=49.30 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=28.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+|+|||+|-.|...|..|+++|+ +|+++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 59999999999999999999999 79999874
No 411
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.72 E-value=0.2 Score=45.22 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+..+|+|||+|-.|-..|..|++.|+.+++|+|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999999779999874
No 412
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.64 E-value=0.15 Score=49.45 Aligned_cols=32 Identities=28% Similarity=0.621 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
+|.|||.|..||+.|..|++.|+ +|+.+|-..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GH-eVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGH-EVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCC-eEEEEeCCH
Confidence 68999999999999999999999 799998753
No 413
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=0.13 Score=49.64 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=44.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG 52 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~ 52 (496)
+..+||||||-|+.--..|..-++.|. .|+=|+.++..||.-.|+..+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~-sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGS-SVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCC-ceEeccCccccCCcccceeec
Confidence 678999999999999999999999999 699999999999998887765
No 414
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.61 E-value=0.16 Score=51.77 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=31.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+.|+|+|+|-+|+++|..|++.|. +|++.|.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~ 38 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKP 38 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence 45679999999999999999999999 699998654
No 415
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.61 E-value=0.15 Score=52.65 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=30.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
...+|+|+|.|.+|++++..|.+.|. +|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 34689999999999999999999999 69999964
No 416
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.53 E-value=0.16 Score=48.89 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=28.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEA 38 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa 38 (496)
+|+|||+|..|...|..|+++|+ +|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 59999999999999999999999 7999986
No 417
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.47 E-value=0.18 Score=48.49 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=33.0
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS 39 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~ 39 (496)
|+.+...+|+|||+|..|.+.|..|.+.|+ .+|++++++
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 676666789999999999999999999984 158888764
No 418
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.42 E-value=0.23 Score=43.34 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+|+|||+|-.|-..|..|++.|+.+++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999999679999974
No 419
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.42 E-value=0.29 Score=36.34 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=30.0
Q ss_pred HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC
Q 010995 194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG 238 (496)
Q Consensus 194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G 238 (496)
+.+.+.+.+.+ .|+++++|+.|++|+.++++++|++.||
T Consensus 42 ~~~~~~~~l~~------~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 42 AAKILEEYLRK------RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHH------TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 44444444444 6999999999999999988877888776
No 420
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.37 E-value=0.21 Score=47.87 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=29.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.+|+|||+|..|.+.|+.|+.+|.-+|+++|..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4799999999999999999998862499999844
No 421
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.35 E-value=0.19 Score=43.34 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=28.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.+|.|||-|..|..-|..|.++|+ +|++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRS 33 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESS
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC-eEEeeccc
Confidence 3579999999999999999999999 79999975
No 422
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.31 E-value=0.18 Score=48.51 Aligned_cols=33 Identities=27% Similarity=0.552 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGI-EDILILEASD 40 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~~ 40 (496)
+|+|||+|..|.++|+.|+.+|. .+|+++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 59999999999999999999993 2699999864
No 423
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.28 E-value=0.26 Score=46.92 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=30.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.+.|+|+|||=+|.++|+.|++.|.++|+|+.++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45679999999999999999999998459999875
No 424
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.19 E-value=0.25 Score=44.22 Aligned_cols=35 Identities=40% Similarity=0.550 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+.+|+|||+|-.|..+|..|++.|+.+++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 56889999999999999999999998779999863
No 425
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.16 E-value=0.16 Score=52.27 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
-.+|.|||+|..|..-|..|+++|+ +|+|+|+++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 4569999999999999999999999 699999863
No 426
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.09 E-value=0.21 Score=49.69 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=31.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
...+|+|+|+|..|+.+|..|+..|. +|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 45789999999999999999999999 699998754
No 427
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.08 E-value=0.24 Score=47.01 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.++|+|||+|=+|-++++.|++.|.++|+|+.|+
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999998679999874
No 428
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.05 E-value=0.18 Score=51.52 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
...+|+|||+|.+||.|+..++..|. +|+++|.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~ 197 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTR 197 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999999999999999999999 69999864
No 429
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.04 E-value=0.26 Score=45.45 Aligned_cols=35 Identities=31% Similarity=0.546 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+..+|+|||+|-.|..+|..|++.|+.+++++|..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999999998889999864
No 430
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.98 E-value=0.23 Score=54.25 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|||||..|+-+|..|.+.|.++|+|+++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999983399998754
No 431
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.90 E-value=0.25 Score=45.77 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
++.+|+|||+|-.|..+|..|+..|+.+++|++..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46799999999999999999999998789999863
No 432
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=91.87 E-value=0.23 Score=48.23 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+|.|||+|..|...|..|++.|+ +|++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 69999999999999999999999 79999874
No 433
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.83 E-value=0.26 Score=47.99 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+..+|+|||+|-.|-.+|..|++.|+.+++|+|..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46789999999999999999999998679999874
No 434
>PRK08328 hypothetical protein; Provisional
Probab=91.83 E-value=0.26 Score=45.12 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=31.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA 38 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa 38 (496)
+..+|+|||+|-.|..+|..|++.|+.+++|+|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4678999999999999999999999978999875
No 435
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.80 E-value=0.23 Score=53.12 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=31.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..++|+|||||.+|+-+|..|.+.|.++|+|+++++
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 357899999999999999999999974699998754
No 436
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.65 E-value=0.29 Score=47.62 Aligned_cols=35 Identities=29% Similarity=0.589 Sum_probs=31.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+.+|+|||+|--|-..|..|++.|+.+++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999999779999973
No 437
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.64 E-value=0.18 Score=50.69 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=30.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
+|.|||.|..|+..|..|+++|+ +|++++.+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHH
Confidence 59999999999999999999999 6999998653
No 438
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.55 E-value=0.28 Score=46.81 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
...+|+|||.|.+|..+|..|++.|. +|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 46789999999999999999999999 799998863
No 439
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.49 E-value=0.3 Score=46.25 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.++|+|+|||=++-++++.|++.|.++|+|+.+.
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 35689999999999999999999998679999764
No 440
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=91.48 E-value=0.31 Score=50.25 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=30.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~ 41 (496)
..++|+|||||..|+-+|..+.+.|.++|+++|..++
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 3578999999999999998888887546999987553
No 441
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.46 E-value=0.21 Score=44.32 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=31.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+.|.|||||..|-.-|..-+..|+ +|.|++++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCC-ceEEecCCH
Confidence 46789999999999999999999999 799999854
No 442
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.44 E-value=0.19 Score=54.17 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.+|+|||||..|-.-|+.++.+|+ +|+++|.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999999 799999864
No 443
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.42 E-value=0.3 Score=44.68 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+.+|+|||+|-.|-..|..|++.|+.+++|+|..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46789999999999999999999999889999863
No 444
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.40 E-value=0.31 Score=43.47 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
++.+|+|||+|--|...|..|+..|+.+++++|..
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46789999999999999999999999789999864
No 445
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.34 E-value=0.26 Score=50.58 Aligned_cols=34 Identities=32% Similarity=0.582 Sum_probs=30.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+++|.|+|.|.+|+++|..|.+.|. +|++.++.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 34679999999999999999999999 79999964
No 446
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=91.33 E-value=0.32 Score=43.38 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=31.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
++.+|+|||+|--|..+|..|+..|+.+++|+|-.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46789999999999999999999999789999864
No 447
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.30 E-value=0.33 Score=46.77 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|.|||+|..|.+.|..|+++|+ +|+++.++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 4579999999999999999999999 799998764
No 448
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.28 E-value=0.32 Score=47.29 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=30.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.+|.|||+|..|...|..|+++|+ +|++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3479999999999999999999999 79999874
No 449
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.27 E-value=0.39 Score=46.30 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=33.6
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIE-DILILEASD 40 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~ 40 (496)
|......+|+|||+|-.|-++|+.|+..|.- ++.|+|.+.
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4555677999999999999999999999873 599999743
No 450
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.25 E-value=0.29 Score=49.75 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=33.1
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
|.....++|.|||-|-+|.+++..|+++|+ +|++.|...
T Consensus 1 ~~~~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~ 39 (438)
T PRK03806 1 MADYQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRI 39 (438)
T ss_pred CcccCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence 333346789999999999999999999999 799999754
No 451
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.06 E-value=0.37 Score=40.40 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+|+|||+|-.|...|..|++.|+.+++|++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999999779999864
No 452
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.01 E-value=0.29 Score=46.47 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=30.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
-.+|.|||||..|-.-|+.++..|+ +|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence 4679999999999999999999889 79999986
No 453
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.01 E-value=0.3 Score=50.43 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+|.|||+|..|.+-|..|+++|+ +|+|++.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 469999999999999999999999 79999875
No 454
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.99 E-value=0.27 Score=50.86 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=31.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..++|.|||.|.+|+++|..|.++|+ +|++.|...
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~ 40 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGA-RLRVADTRE 40 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCC
Confidence 35679999999999999999999999 699999754
No 455
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.98 E-value=0.41 Score=42.77 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+.++|+|+|.|-.|..+|..|.+.|. +|++.+.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 345789999999999999999999999 69998865
No 456
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.94 E-value=0.27 Score=53.03 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
-++|+|||||..|-.-|+.++.+|+ +|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 3579999999999999999999999 799999864
No 457
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.88 E-value=0.41 Score=45.00 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|+|||=++.++++.|++.|.++|+|+.+..
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 35799999999999999999999985699998753
No 458
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.76 E-value=0.35 Score=49.65 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995 403 APVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKD 444 (496)
Q Consensus 403 ~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~ 444 (496)
+..++||.+||.+.. +..+..|+..|..||..|.+.+.+.
T Consensus 428 Ts~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 428 TSNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Confidence 356799999998864 2357789999999999999988753
No 459
>PRK08223 hypothetical protein; Validated
Probab=90.68 E-value=0.39 Score=45.10 Aligned_cols=35 Identities=31% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
++.+|+|||+|--|-.+|..|+..|+.+++|+|..
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46789999999999999999999999889998863
No 460
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.65 E-value=0.32 Score=49.68 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
...+|+|+|+|..|+.++..+...|. +|+++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789999999999999999999999 69999864
No 461
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.60 E-value=0.38 Score=45.69 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..++|+|||.|-.|.+.|..|+..|. +|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 45789999999999999999999999 799999864
No 462
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.49 E-value=0.33 Score=49.73 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=30.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
..++|.|||.|-+|+++|..|.+.|+ +|++.|..
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~ 41 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDN 41 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCC
Confidence 34679999999999999999999999 69999854
No 463
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.45 E-value=0.51 Score=37.83 Aligned_cols=31 Identities=35% Similarity=0.653 Sum_probs=27.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 9 VIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 9 VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
|+|+|.|-.|...|..|.+.+. +|+++|..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCc
Confidence 7999999999999999999887 699999864
No 464
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=90.41 E-value=0.33 Score=41.26 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+.|+|+|=|..|-.+|..|+..|. +|+|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECCh
Confidence 35789999999999999999999999 799999754
No 465
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.31 E-value=0.41 Score=49.08 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|||+|..|+-+|..+.+.|.++|+|+++++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47899999999999999999999963699998754
No 466
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.31 E-value=0.38 Score=53.55 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.++|+|||||-.|+-||..+.+.|. +|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEecC
Confidence 4789999999999999999999999 699998764
No 467
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.21 E-value=0.29 Score=52.97 Aligned_cols=33 Identities=18% Similarity=0.534 Sum_probs=30.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.+|.|||||..|..-|+.++.+|+ +|+++|.++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence 579999999999999999999999 799999764
No 468
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.20 E-value=0.49 Score=44.77 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
..++|+|+|+|-+|.++++.|++.|..+|+|+.++
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999994479999875
No 469
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=90.20 E-value=0.44 Score=46.59 Aligned_cols=35 Identities=26% Similarity=0.651 Sum_probs=31.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC--cEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIE--DILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~--~V~vlEa~ 39 (496)
+..+|+|.|||-||+++|..|...|.+ +|.++|+.
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 456899999999999999999999986 78888875
No 470
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.19 E-value=0.38 Score=46.75 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+|.|||||-.|.+-|..|+++|+ +|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 49999999999999999999999 79999874
No 471
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.14 E-value=0.42 Score=47.46 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+.|+|||.|..|..+|..|+..|. +|+|+|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 46789999999999999999999999 699999754
No 472
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.13 E-value=0.49 Score=43.25 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
++.+|+|||.|-.|-.+|..|++.|+.+++|+|..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46789999999999999999999999789999863
No 473
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.99 E-value=0.52 Score=45.31 Aligned_cols=36 Identities=17% Similarity=0.563 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIE-DILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~ 40 (496)
++.+|+|||+|-.|-++|+.|+..|.. ++.|+|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 466999999999999999999998863 599998754
No 474
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.89 E-value=0.18 Score=48.49 Aligned_cols=38 Identities=32% Similarity=0.640 Sum_probs=34.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG 44 (496)
.++.+|||||+.||--+---.+.|- +||++|.-+.+||
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGs-eVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGS-EVTVVEFLDQIGG 248 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCC-eEEEEEehhhhcc
Confidence 4689999999999999999999999 6999999888776
No 475
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.87 E-value=0.36 Score=49.29 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.++|+|||+|.+|+-.|..|++.+. +|+++.++
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~-~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAK-EVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCC-eEEEEEee
Confidence 45789999999999999999999998 69998764
No 476
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.84 E-value=0.4 Score=45.45 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+|.|||.|..|.+.|..|+++|+ +|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 59999999999999999999999 69999874
No 477
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.83 E-value=0.42 Score=48.24 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=30.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+|.|||-|.+|.++|..|.++|+ +|++.|.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 3579999999999999999999999 699999653
No 478
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=89.77 E-value=0.54 Score=44.64 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=31.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.++|+|||||=++-+.|+.|++.|.++|+|+.++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45689999999999999999999998779999876
No 479
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.76 E-value=0.55 Score=44.21 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.++|+|+|||=++-++++.|++.|.++|+|+-|.
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4679999999999999999999997579999874
No 480
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.76 E-value=0.47 Score=45.65 Aligned_cols=33 Identities=33% Similarity=0.632 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIE-DILILEASD 40 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~ 40 (496)
+|+|||+|-.|.+.|+.|+..|.. +|+|++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 699999999999999999999952 699999854
No 481
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.70 E-value=0.41 Score=51.59 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=30.2
Q ss_pred CCCEEEECCCHHHHHHHHHHH-HCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILA-ENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~-~~G~~~V~vlEa~~ 40 (496)
.++|+|||||..|..-|..++ ++|+ +|+++|.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~ 338 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGI-PVRIKDINP 338 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCH
Confidence 357999999999999999998 5899 799999864
No 482
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.70 E-value=0.5 Score=45.46 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=29.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
+.+|+|||||..|.+.|+.|+..|..+|.++|..+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 35899999999999999999998742599999754
No 483
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.68 E-value=0.36 Score=47.98 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=27.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 8 PVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
+|.|||.|..|+..|..|+. |+ +|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~-~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NH-EVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CC-cEEEEECCH
Confidence 49999999999999988885 99 799999864
No 484
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.63 E-value=0.51 Score=44.48 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=30.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.++|+|+|+|-+|.+.|+.|++.|. +|+|+.++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADC-NVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5679999999999999999999999 79999875
No 485
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.51 E-value=0.58 Score=45.25 Aligned_cols=36 Identities=19% Similarity=0.486 Sum_probs=31.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
++.+|+|||||-.|-+.|+.|+..|..++.|+|..+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 567899999999999999999999943699999754
No 486
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.26 E-value=0.46 Score=48.41 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=28.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCC
Q 010995 8 PVIIIGAGVSGISAGKILAENG--IEDILILEASD 40 (496)
Q Consensus 8 dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~ 40 (496)
+|+|||+|..||..|..|+++| + +|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~-~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDI-EVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCC-eEEEEECCH
Confidence 5999999999999999999985 7 699998754
No 487
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.21 E-value=0.6 Score=46.02 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+..+|+|||+|-.|..+|..|+..|+.+++|+|..
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999999998789999863
No 488
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.09 E-value=0.44 Score=51.44 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCCEEEECCCHHHHHHHHHHH-HCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILA-ENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~-~~G~~~V~vlEa~~ 40 (496)
-.+|+|||||..|-.-|..++ ..|+ +|+++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence 357999999999999999999 8899 799999753
No 489
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.06 E-value=0.48 Score=48.32 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=30.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
.--|+|||.|-+|.++|..|.+.|+ +|++.|..+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCC
Confidence 4569999999999999999999999 699999754
No 490
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=88.99 E-value=0.83 Score=38.70 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=28.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+.+.|+|||-|--|.+-|..|.+.|+ +|+|-++.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~ 36 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLRE 36 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-T
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecC
Confidence 46789999999999999999999999 79998864
No 491
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.88 E-value=0.37 Score=45.42 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
.+.+|+|||+|-.|..+|..|+..|+++|+|+|-.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 46789999999999999999999999889999864
No 492
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=88.85 E-value=0.59 Score=45.01 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=30.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
...+|+|||+|-.|..+|..|.+.|..+|+|++++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~ 211 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT 211 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999998775479999875
No 493
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=88.82 E-value=0.3 Score=48.32 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=31.7
Q ss_pred cccceeeCceeEEEEEcCCceEEEeCCCc-EEEcCEEEEecChH
Q 010995 211 LDNRLKLNKVVRELQHSRNGVTVKTEDGC-VYEANYVILSASIG 253 (496)
Q Consensus 211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VI~A~p~~ 253 (496)
.|++|+++++|++|+.+ .|++.+|+ ++.++.+|.|+...
T Consensus 222 ~GV~v~l~~~Vt~v~~~----~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 222 LGVEVLLGTPVTEVTPD----GVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCCEEEcCCceEEECCC----cEEEccCCeeEecCEEEEcCCCc
Confidence 69999999999999865 35555665 59999999998654
No 494
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.82 E-value=0.58 Score=46.35 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=31.4
Q ss_pred CCCCCEEEEC-CCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 4 TSRSPVIIIG-AGVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 4 ~~~~dVvIIG-aGiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+...+|+||| .|..|-+.|..|.++|+ +|++++++
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 3457899999 89999999999999999 69999975
No 495
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.81 E-value=0.74 Score=42.32 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=33.4
Q ss_pred CCCCCCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 1 MDSTSRSPVIIIGA-GVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 1 m~~~~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
|...+++.++|.|| |-.|...|.+|.++|. +|+++.++.
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~ 40 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQ 40 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 66666788999996 9999999999999999 699998753
No 496
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.77 E-value=0.6 Score=46.67 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995 5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40 (496)
Q Consensus 5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~ 40 (496)
..+.|+|||.|..|..+|..|...|. +|+++|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 46789999999999999999999999 799999754
No 497
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.75 E-value=0.66 Score=47.18 Aligned_cols=39 Identities=23% Similarity=0.515 Sum_probs=32.9
Q ss_pred CCCCCC-CCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCC
Q 010995 1 MDSTSR-SPVIIIGAGVSGISAGKILAEN--GIEDILILEASD 40 (496)
Q Consensus 1 m~~~~~-~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~ 40 (496)
|+.... ++|.|||.|-+|.+++..|.+. |+ +|++.|.++
T Consensus 1 ~~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~-~v~~~D~~~ 42 (438)
T PRK04663 1 MDRWQGIKNVVVVGLGITGLSVVKHLRKYQPQL-TVKVIDTRE 42 (438)
T ss_pred CCcccCCceEEEEeccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence 555455 7799999999999999999998 58 699999754
No 498
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.64 E-value=0.7 Score=41.05 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=29.7
Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 5 SRSPVIIIGA-GVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
+..+|+|+|| |-.|..+|..|++.|. +|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4578999997 9999999999999998 79999653
No 499
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=88.58 E-value=0.82 Score=38.25 Aligned_cols=33 Identities=33% Similarity=0.672 Sum_probs=28.8
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995 8 PVIIIGA-GVSGISAGKILAENGIE-DILILEASD 40 (496)
Q Consensus 8 dVvIIGa-GiaGL~aA~~L~~~G~~-~V~vlEa~~ 40 (496)
+|+|||| |-.|-+.|+.|...+.- ++.|++..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 99999999999999853 688998753
No 500
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.55 E-value=0.76 Score=42.48 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=32.4
Q ss_pred CCCCCCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995 1 MDSTSRSPVIIIGA-GVSGISAGKILAENGIEDILILEAS 39 (496)
Q Consensus 1 m~~~~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~ 39 (496)
|...+.+.|+|.|| |-.|...|.+|+++|+ +|+++.+.
T Consensus 1 ~~~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 1 MGRFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 44455678999997 9999999999999999 69999764
Done!