Query 010997
Match_columns 496
No_of_seqs 698 out of 3888
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 06:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0264 Nucleosome remodeling 100.0 6.5E-75 1.4E-79 519.9 35.1 394 36-478 12-414 (422)
2 KOG0271 Notchless-like WD40 re 100.0 3.8E-48 8.2E-53 339.5 23.6 309 135-496 110-461 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.9E-46 1.5E-50 329.4 21.3 268 136-496 171-440 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.5E-44 3.3E-49 316.8 22.2 303 93-466 131-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-44 4.1E-49 320.3 21.1 249 132-466 209-458 (459)
6 KOG0302 Ribosome Assembly prot 100.0 1E-41 2.2E-46 298.8 29.3 358 51-452 56-430 (440)
7 KOG0263 Transcription initiati 100.0 1.2E-40 2.6E-45 318.5 23.5 269 127-471 365-652 (707)
8 KOG0279 G protein beta subunit 100.0 2.7E-39 5.8E-44 273.1 27.5 275 133-496 8-293 (315)
9 KOG0265 U5 snRNP-specific prot 100.0 4.8E-40 1E-44 280.3 22.2 274 133-496 40-318 (338)
10 KOG0286 G-protein beta subunit 100.0 4.2E-39 9.1E-44 273.5 27.1 277 134-496 49-325 (343)
11 KOG0284 Polyadenylation factor 100.0 1.9E-40 4.1E-45 293.6 15.2 263 140-496 96-360 (464)
12 KOG0286 G-protein beta subunit 100.0 4.3E-37 9.4E-42 261.2 29.7 252 133-466 90-343 (343)
13 KOG0273 Beta-transducin family 100.0 6.1E-38 1.3E-42 282.5 25.6 281 139-468 234-523 (524)
14 KOG0295 WD40 repeat-containing 100.0 2.2E-38 4.7E-43 276.7 20.2 271 133-495 101-385 (406)
15 KOG0315 G-protein beta subunit 100.0 5.3E-37 1.1E-41 255.0 25.7 276 133-494 32-308 (311)
16 KOG0277 Peroxisomal targeting 100.0 1.5E-37 3.2E-42 259.0 22.1 257 131-467 51-308 (311)
17 KOG0263 Transcription initiati 100.0 4.1E-37 8.9E-42 294.3 27.3 251 131-447 442-701 (707)
18 KOG0279 G protein beta subunit 100.0 3.6E-36 7.9E-41 254.1 28.0 278 94-468 33-313 (315)
19 KOG0319 WD40-repeat-containing 100.0 5.3E-37 1.1E-41 290.6 24.0 275 135-496 318-599 (775)
20 KOG0284 Polyadenylation factor 100.0 1.3E-37 2.8E-42 275.6 17.0 247 136-468 134-380 (464)
21 KOG0645 WD40 repeat protein [G 100.0 2.8E-35 6.1E-40 247.7 29.0 282 132-496 6-290 (312)
22 KOG0277 Peroxisomal targeting 100.0 3.9E-36 8.4E-41 250.6 22.4 269 144-496 12-288 (311)
23 KOG0273 Beta-transducin family 100.0 3.9E-36 8.5E-41 270.9 23.2 282 133-495 171-502 (524)
24 KOG0645 WD40 repeat protein [G 100.0 1.1E-34 2.3E-39 244.2 27.2 291 69-468 19-311 (312)
25 KOG0285 Pleiotropic regulator 100.0 7.3E-36 1.6E-40 260.3 20.2 244 136-469 147-390 (460)
26 KOG0316 Conserved WD40 repeat- 100.0 1.7E-35 3.7E-40 244.0 20.8 269 132-496 9-280 (307)
27 KOG0318 WD40 repeat stress pro 100.0 1.5E-34 3.2E-39 264.1 29.0 318 129-495 178-582 (603)
28 KOG0266 WD40 repeat-containing 100.0 6.3E-35 1.4E-39 286.9 28.8 267 139-496 158-432 (456)
29 KOG0281 Beta-TrCP (transducin 100.0 1.4E-35 3.1E-40 257.5 16.8 313 47-470 162-479 (499)
30 KOG0291 WD40-repeat-containing 100.0 1.1E-33 2.5E-38 268.4 29.8 375 58-496 90-530 (893)
31 KOG0282 mRNA splicing factor [ 100.0 3.2E-35 7E-40 266.0 16.7 279 129-496 203-484 (503)
32 KOG0281 Beta-TrCP (transducin 100.0 2.4E-35 5.2E-40 256.1 14.8 259 139-495 196-458 (499)
33 KOG0315 G-protein beta subunit 100.0 2.2E-33 4.9E-38 233.4 23.9 258 152-495 9-267 (311)
34 KOG0295 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 249.6 19.2 247 135-467 145-405 (406)
35 KOG0292 Vesicle coat complex C 100.0 1E-33 2.2E-38 272.8 22.0 271 140-496 9-302 (1202)
36 KOG0276 Vesicle coat complex C 100.0 1.7E-33 3.6E-38 262.0 22.6 267 137-495 10-278 (794)
37 KOG0313 Microtubule binding pr 100.0 1.1E-32 2.3E-37 242.5 24.9 280 133-468 137-418 (423)
38 KOG0291 WD40-repeat-containing 100.0 2.2E-32 4.8E-37 259.8 29.0 265 133-470 343-614 (893)
39 cd00200 WD40 WD40 domain, foun 100.0 4.3E-32 9.3E-37 252.9 29.8 266 137-496 6-271 (289)
40 KOG0319 WD40-repeat-containing 100.0 6.2E-33 1.3E-37 263.1 23.6 259 135-468 360-619 (775)
41 KOG0296 Angio-associated migra 100.0 2E-33 4.3E-38 245.9 18.2 309 133-496 57-378 (399)
42 KOG0285 Pleiotropic regulator 100.0 2.1E-33 4.6E-38 244.9 18.2 229 184-494 140-368 (460)
43 KOG0265 U5 snRNP-specific prot 100.0 9E-32 1.9E-36 229.8 24.4 269 93-466 63-336 (338)
44 PLN00181 protein SPA1-RELATED; 100.0 2.9E-31 6.3E-36 280.2 33.8 287 136-496 479-773 (793)
45 KOG0293 WD40 repeat-containing 100.0 1.9E-32 4.1E-37 243.2 20.0 278 129-496 213-492 (519)
46 KOG0313 Microtubule binding pr 100.0 6.8E-32 1.5E-36 237.4 23.0 275 133-495 98-398 (423)
47 KOG0293 WD40 repeat-containing 100.0 2.1E-31 4.6E-36 236.5 24.5 250 133-469 262-514 (519)
48 KOG0282 mRNA splicing factor [ 100.0 3.6E-32 7.8E-37 246.3 20.0 269 94-466 232-503 (503)
49 KOG0266 WD40 repeat-containing 100.0 2E-31 4.4E-36 262.1 26.6 249 137-468 200-454 (456)
50 cd00200 WD40 WD40 domain, foun 100.0 1.2E-29 2.7E-34 236.3 35.4 279 66-466 11-289 (289)
51 PTZ00421 coronin; Provisional 100.0 1.7E-30 3.6E-35 254.3 28.9 286 139-496 19-313 (493)
52 PLN00181 protein SPA1-RELATED; 100.0 7.9E-30 1.7E-34 269.4 36.2 263 137-467 529-792 (793)
53 KOG0276 Vesicle coat complex C 100.0 2.6E-31 5.6E-36 247.5 20.9 204 140-405 55-259 (794)
54 KOG0268 Sof1-like rRNA process 100.0 6.8E-32 1.5E-36 236.0 16.0 280 135-468 61-345 (433)
55 KOG0310 Conserved WD40 repeat- 100.0 1.9E-31 4E-36 242.1 18.7 265 139-496 25-289 (487)
56 KOG0305 Anaphase promoting com 100.0 1.7E-30 3.6E-35 245.1 25.8 242 140-469 217-462 (484)
57 KOG0641 WD40 repeat protein [G 100.0 3.9E-29 8.6E-34 205.3 29.3 309 128-468 20-349 (350)
58 PTZ00420 coronin; Provisional 100.0 4.4E-30 9.6E-35 252.3 27.5 258 158-496 49-316 (568)
59 KOG0318 WD40 repeat stress pro 100.0 8.4E-30 1.8E-34 233.1 26.2 282 135-494 54-371 (603)
60 KOG0283 WD40 repeat-containing 100.0 2.4E-30 5.2E-35 250.2 22.8 252 138-468 265-576 (712)
61 KOG0292 Vesicle coat complex C 100.0 2.2E-30 4.7E-35 250.0 22.2 235 133-443 44-305 (1202)
62 KOG0643 Translation initiation 100.0 8.2E-30 1.8E-34 214.4 22.3 277 134-496 4-297 (327)
63 KOG0275 Conserved WD40 repeat- 100.0 1.2E-30 2.6E-35 225.0 15.9 277 134-496 207-489 (508)
64 KOG0306 WD40-repeat-containing 100.0 3.9E-29 8.5E-34 237.7 27.6 271 131-496 364-644 (888)
65 KOG0640 mRNA cleavage stimulat 100.0 1E-29 2.2E-34 218.1 20.9 281 131-468 103-426 (430)
66 KOG0300 WD40 repeat-containing 100.0 1.2E-29 2.6E-34 218.2 20.4 309 135-495 143-453 (481)
67 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-28 3.1E-33 212.3 27.0 264 139-496 13-285 (311)
68 KOG0772 Uncharacterized conser 100.0 9.1E-30 2E-34 232.2 20.6 305 128-496 155-467 (641)
69 KOG0306 WD40-repeat-containing 100.0 5.4E-29 1.2E-33 236.7 26.4 261 133-470 406-666 (888)
70 KOG1332 Vesicle coat complex C 100.0 1.1E-29 2.3E-34 211.0 17.6 258 138-468 9-286 (299)
71 KOG0274 Cdc4 and related F-box 100.0 9E-29 2E-33 242.4 27.1 245 135-482 244-490 (537)
72 KOG0647 mRNA export protein (c 100.0 6.4E-29 1.4E-33 212.6 22.6 266 139-495 26-302 (347)
73 KOG1407 WD40 repeat protein [F 100.0 5.7E-29 1.2E-33 208.7 21.1 268 134-496 14-282 (313)
74 KOG0316 Conserved WD40 repeat- 100.0 6.3E-29 1.4E-33 205.3 20.8 220 186-488 8-227 (307)
75 PTZ00421 coronin; Provisional 100.0 5.8E-28 1.3E-32 236.5 30.7 235 136-441 71-314 (493)
76 KOG0269 WD40 repeat-containing 100.0 1.1E-29 2.3E-34 242.4 16.8 240 142-452 89-331 (839)
77 KOG0270 WD40 repeat-containing 100.0 2.6E-28 5.7E-33 219.2 24.4 262 140-469 173-450 (463)
78 KOG0264 Nucleosome remodeling 100.0 3.2E-28 7E-33 219.6 24.9 227 133-404 170-405 (422)
79 KOG0278 Serine/threonine kinas 100.0 1.7E-29 3.6E-34 210.5 15.3 246 133-469 52-298 (334)
80 KOG0274 Cdc4 and related F-box 100.0 9.7E-29 2.1E-33 242.1 21.5 255 139-495 207-463 (537)
81 KOG0973 Histone transcription 100.0 2.7E-28 5.8E-33 241.9 24.6 281 140-470 13-357 (942)
82 KOG0288 WD40 repeat protein Ti 100.0 9.3E-30 2E-34 226.3 12.8 270 133-496 168-441 (459)
83 KOG0296 Angio-associated migra 100.0 7.9E-28 1.7E-32 211.0 24.1 305 94-468 81-398 (399)
84 KOG0305 Anaphase promoting com 100.0 4.1E-28 9E-33 228.9 23.5 258 144-496 181-441 (484)
85 KOG0269 WD40 repeat-containing 100.0 1.1E-28 2.4E-33 235.5 19.6 277 140-495 39-318 (839)
86 KOG0278 Serine/threonine kinas 100.0 3.7E-29 8.1E-34 208.4 13.6 265 136-496 10-277 (334)
87 KOG0308 Conserved WD40 repeat- 100.0 1.2E-28 2.7E-33 230.8 18.0 255 138-469 19-286 (735)
88 KOG0283 WD40 repeat-containing 100.0 6.1E-28 1.3E-32 233.6 22.8 259 190-487 261-545 (712)
89 KOG0289 mRNA splicing factor [ 100.0 1.3E-27 2.8E-32 213.9 22.9 265 141-494 220-484 (506)
90 KOG0772 Uncharacterized conser 100.0 5.1E-28 1.1E-32 220.9 20.3 290 93-466 183-485 (641)
91 KOG0299 U3 snoRNP-associated p 100.0 1.3E-27 2.7E-32 215.7 22.5 294 134-496 136-435 (479)
92 KOG0288 WD40 repeat protein Ti 100.0 3.3E-28 7.2E-33 216.5 17.7 264 92-466 190-459 (459)
93 KOG0310 Conserved WD40 repeat- 100.0 1.4E-27 3.1E-32 217.0 21.8 240 139-466 67-307 (487)
94 PTZ00420 coronin; Provisional 100.0 1.7E-26 3.7E-31 227.2 31.0 240 133-442 67-318 (568)
95 KOG1407 WD40 repeat protein [F 100.0 2.1E-26 4.6E-31 193.3 26.3 275 93-468 36-311 (313)
96 KOG1007 WD repeat protein TSSC 100.0 1.2E-26 2.7E-31 197.4 24.1 312 85-468 27-361 (370)
97 KOG0643 Translation initiation 100.0 2E-27 4.3E-32 200.1 18.9 266 134-469 46-318 (327)
98 KOG0294 WD40 repeat-containing 100.0 1.5E-26 3.2E-31 199.3 23.0 244 133-469 36-282 (362)
99 KOG1036 Mitotic spindle checkp 100.0 3.8E-26 8.3E-31 196.4 24.5 261 140-495 13-283 (323)
100 KOG0270 WD40 repeat-containing 100.0 5.3E-27 1.1E-31 210.9 19.7 286 56-405 163-451 (463)
101 KOG0300 WD40 repeat-containing 100.0 1.1E-26 2.5E-31 200.0 20.8 264 133-468 183-476 (481)
102 KOG1332 Vesicle coat complex C 100.0 2.1E-27 4.6E-32 197.4 15.8 242 191-496 7-266 (299)
103 KOG0275 Conserved WD40 repeat- 100.0 2.4E-27 5.1E-32 204.7 16.3 273 94-467 230-508 (508)
104 KOG2445 Nuclear pore complex c 100.0 9.6E-26 2.1E-30 193.7 25.4 280 137-468 10-318 (361)
105 KOG0289 mRNA splicing factor [ 100.0 3.1E-26 6.6E-31 205.2 23.2 249 135-467 256-505 (506)
106 KOG0299 U3 snoRNP-associated p 100.0 2.2E-26 4.8E-31 207.7 22.0 237 137-452 199-447 (479)
107 KOG0646 WD40 repeat protein [G 99.9 2.6E-26 5.6E-31 207.7 20.4 247 135-446 76-335 (476)
108 KOG1408 WD40 repeat protein [F 99.9 4.1E-26 8.8E-31 215.9 20.3 329 51-469 359-714 (1080)
109 KOG0290 Conserved WD40 repeat- 99.9 6.5E-25 1.4E-29 187.1 24.8 304 61-450 41-355 (364)
110 KOG0267 Microtubule severing p 99.9 4E-27 8.6E-32 223.3 11.4 232 135-446 23-254 (825)
111 KOG0308 Conserved WD40 repeat- 99.9 6.5E-26 1.4E-30 212.7 19.0 284 94-468 42-327 (735)
112 KOG4283 Transcription-coupled 99.9 9.3E-26 2E-30 192.6 18.2 234 192-469 40-277 (397)
113 KOG0640 mRNA cleavage stimulat 99.9 2.8E-26 6E-31 197.0 14.4 226 188-469 105-336 (430)
114 KOG0639 Transducin-like enhanc 99.9 3E-26 6.4E-31 208.7 15.3 272 132-495 411-683 (705)
115 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-23 2.7E-28 181.9 28.4 240 139-468 55-303 (311)
116 KOG0301 Phospholipase A2-activ 99.9 3E-25 6.5E-30 209.8 20.0 257 135-494 9-267 (745)
117 KOG0301 Phospholipase A2-activ 99.9 9E-25 1.9E-29 206.6 22.9 241 132-470 49-290 (745)
118 KOG0321 WD40 repeat-containing 99.9 9.4E-25 2E-29 204.5 22.0 278 146-496 55-370 (720)
119 KOG4283 Transcription-coupled 99.9 2E-24 4.4E-29 184.4 21.3 303 137-468 40-365 (397)
120 KOG0321 WD40 repeat-containing 99.9 3.6E-24 7.9E-29 200.7 24.7 308 133-493 93-424 (720)
121 KOG0302 Ribosome Assembly prot 99.9 8.8E-25 1.9E-29 192.6 19.2 230 190-468 146-378 (440)
122 KOG1273 WD40 repeat protein [G 99.9 2.8E-24 6E-29 185.3 21.6 280 134-496 18-303 (405)
123 KOG0646 WD40 repeat protein [G 99.9 3.7E-24 8.1E-29 193.8 22.7 267 154-496 51-329 (476)
124 KOG2096 WD40 repeat protein [G 99.9 1.1E-23 2.5E-28 181.7 24.1 296 135-496 81-383 (420)
125 KOG1274 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 205.0 27.1 261 137-496 10-280 (933)
126 KOG0267 Microtubule severing p 99.9 4E-26 8.7E-31 216.5 9.1 243 155-496 6-248 (825)
127 KOG0307 Vesicle coat complex C 99.9 6.1E-25 1.3E-29 219.2 16.7 259 139-470 63-329 (1049)
128 KOG4328 WD40 protein [Function 99.9 5.5E-24 1.2E-28 192.2 20.7 263 137-468 183-450 (498)
129 KOG0973 Histone transcription 99.9 1E-24 2.2E-29 216.7 17.2 251 190-496 7-275 (942)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.8E-23 1.9E-27 192.3 29.5 263 137-496 27-300 (300)
131 KOG0307 Vesicle coat complex C 99.9 2.9E-25 6.3E-30 221.5 12.4 278 144-496 10-306 (1049)
132 KOG2919 Guanine nucleotide-bin 99.9 1.6E-23 3.5E-28 181.2 21.0 278 145-496 54-350 (406)
133 KOG0650 WD40 repeat nucleolar 99.9 1.3E-23 2.8E-28 195.6 21.2 309 132-496 392-715 (733)
134 KOG1063 RNA polymerase II elon 99.9 4E-23 8.7E-28 195.4 24.8 326 93-496 210-674 (764)
135 KOG0647 mRNA export protein (c 99.9 7.2E-23 1.6E-27 175.7 23.0 261 94-453 45-316 (347)
136 KOG1408 WD40 repeat protein [F 99.9 5.4E-23 1.2E-27 195.0 24.1 296 130-496 359-693 (1080)
137 KOG0639 Transducin-like enhanc 99.9 8.9E-24 1.9E-28 192.7 18.1 241 139-468 464-704 (705)
138 KOG0294 WD40 repeat-containing 99.9 1E-22 2.2E-27 175.7 23.5 224 93-405 57-283 (362)
139 KOG2055 WD40 repeat protein [G 99.9 3.2E-23 6.8E-28 187.4 21.2 291 140-468 213-512 (514)
140 KOG1036 Mitotic spindle checkp 99.9 1.5E-22 3.2E-27 174.5 24.3 237 135-450 49-294 (323)
141 KOG4378 Nuclear protein COP1 [ 99.9 1.4E-23 3E-28 191.2 18.2 266 143-496 37-303 (673)
142 KOG2048 WD40 repeat protein [G 99.9 1.1E-22 2.5E-27 192.1 24.4 267 139-493 24-298 (691)
143 KOG1539 WD repeat protein [Gen 99.9 7E-23 1.5E-27 197.6 22.6 310 132-496 235-627 (910)
144 KOG0268 Sof1-like rRNA process 99.9 7.8E-24 1.7E-28 185.7 14.6 224 187-496 58-282 (433)
145 KOG2445 Nuclear pore complex c 99.9 1.7E-22 3.6E-27 173.9 21.7 249 191-495 9-297 (361)
146 KOG0641 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 163.4 23.0 227 130-403 79-349 (350)
147 KOG2106 Uncharacterized conser 99.9 1E-21 2.2E-26 179.5 23.7 296 137-467 284-625 (626)
148 KOG4227 WD40 repeat protein [G 99.9 5.7E-22 1.2E-26 175.7 21.4 284 131-470 47-389 (609)
149 KOG1587 Cytoplasmic dynein int 99.9 1.3E-21 2.9E-26 190.4 26.1 281 135-477 237-525 (555)
150 KOG1007 WD repeat protein TSSC 99.9 7.3E-22 1.6E-26 168.4 19.2 217 138-404 121-362 (370)
151 KOG0290 Conserved WD40 repeat- 99.9 3.5E-21 7.6E-26 164.5 23.3 295 134-496 38-345 (364)
152 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.7E-21 1.2E-25 179.9 26.6 252 154-496 2-258 (300)
153 KOG4378 Nuclear protein COP1 [ 99.9 8.2E-22 1.8E-26 179.7 18.6 222 143-441 82-304 (673)
154 KOG4328 WD40 protein [Function 99.9 5.9E-22 1.3E-26 179.1 17.5 220 187-468 178-399 (498)
155 KOG2106 Uncharacterized conser 99.9 1.2E-20 2.7E-25 172.5 26.1 269 141-468 247-521 (626)
156 KOG2096 WD40 repeat protein [G 99.9 9.6E-22 2.1E-26 169.9 17.0 219 189-468 80-308 (420)
157 KOG1063 RNA polymerase II elon 99.9 4.3E-21 9.3E-26 181.8 22.0 304 131-496 182-628 (764)
158 KOG1188 WD40 repeat protein [G 99.9 4.6E-21 1E-25 167.4 19.7 251 154-468 41-346 (376)
159 KOG1445 Tumor-specific antigen 99.9 1.3E-21 2.9E-26 183.3 16.0 122 325-469 629-751 (1012)
160 KOG0642 Cell-cycle nuclear pro 99.9 1.7E-21 3.7E-26 180.7 15.4 278 135-486 289-573 (577)
161 KOG1539 WD repeat protein [Gen 99.9 1.4E-19 3.1E-24 175.0 28.0 312 133-496 195-586 (910)
162 KOG2919 Guanine nucleotide-bin 99.9 6.1E-20 1.3E-24 159.2 22.8 246 138-450 102-359 (406)
163 KOG1034 Transcriptional repres 99.9 1.6E-20 3.4E-25 163.2 16.5 257 138-468 87-383 (385)
164 KOG0303 Actin-binding protein 99.9 1.1E-19 2.3E-24 161.6 21.6 215 136-405 77-296 (472)
165 KOG0303 Actin-binding protein 99.9 1.2E-19 2.7E-24 161.3 21.8 217 189-470 75-296 (472)
166 KOG0322 G-protein beta subunit 99.9 6.1E-20 1.3E-24 154.9 18.8 289 136-467 10-322 (323)
167 KOG1274 WD40 repeat protein [G 99.8 2.8E-19 6.1E-24 174.9 24.4 224 139-448 55-288 (933)
168 KOG0650 WD40 repeat nucleolar 99.8 2.1E-19 4.5E-24 167.8 22.0 284 93-465 416-732 (733)
169 KOG1009 Chromatin assembly com 99.8 1.1E-19 2.5E-24 162.2 18.7 184 139-354 12-195 (434)
170 KOG2048 WD40 repeat protein [G 99.8 8.8E-19 1.9E-23 166.1 25.4 247 138-468 67-319 (691)
171 KOG1334 WD40 repeat protein [G 99.8 4.9E-19 1.1E-23 161.6 20.5 294 134-496 136-446 (559)
172 KOG2055 WD40 repeat protein [G 99.8 5.6E-19 1.2E-23 160.2 20.4 230 198-496 215-445 (514)
173 KOG1034 Transcriptional repres 99.8 1.9E-19 4.2E-24 156.5 15.8 268 137-470 35-339 (385)
174 KOG1538 Uncharacterized conser 99.8 2.9E-19 6.2E-24 168.7 17.5 256 142-496 14-273 (1081)
175 KOG0644 Uncharacterized conser 99.8 1.8E-20 3.9E-25 181.0 8.8 261 134-496 184-448 (1113)
176 KOG0649 WD40 repeat protein [G 99.8 3.5E-18 7.6E-23 142.7 20.2 254 142-469 12-275 (325)
177 KOG1587 Cytoplasmic dynein int 99.8 3.8E-18 8.2E-23 166.5 22.2 241 163-472 222-476 (555)
178 COG2319 FOG: WD40 repeat [Gene 99.8 4.4E-17 9.6E-22 160.8 29.2 269 135-494 60-336 (466)
179 KOG1310 WD40 repeat protein [G 99.8 1.4E-18 3E-23 160.8 14.6 226 135-405 45-305 (758)
180 KOG1188 WD40 repeat protein [G 99.8 3.3E-18 7.2E-23 149.7 16.2 197 209-470 41-244 (376)
181 KOG1273 WD40 repeat protein [G 99.8 3.3E-18 7.2E-23 148.0 15.8 202 200-473 27-231 (405)
182 KOG0642 Cell-cycle nuclear pro 99.8 2.9E-18 6.2E-23 159.5 16.3 223 131-404 335-562 (577)
183 KOG1445 Tumor-specific antigen 99.8 3.7E-18 8.1E-23 160.4 16.8 217 136-404 623-845 (1012)
184 KOG1524 WD40 repeat-containing 99.8 6.6E-18 1.4E-22 155.9 18.1 229 138-443 12-240 (737)
185 KOG1009 Chromatin assembly com 99.8 3.2E-18 6.9E-23 153.0 14.6 260 191-496 8-292 (434)
186 PRK11028 6-phosphogluconolacto 99.8 1.2E-15 2.6E-20 145.5 33.4 266 132-468 26-304 (330)
187 KOG1517 Guanine nucleotide bin 99.8 1E-16 2.2E-21 159.1 23.5 285 140-496 1064-1361(1387)
188 KOG1310 WD40 repeat protein [G 99.8 9.9E-18 2.1E-22 155.2 14.9 234 188-469 43-304 (758)
189 KOG4227 WD40 repeat protein [G 99.8 4.1E-17 8.8E-22 145.2 18.1 176 189-407 50-229 (609)
190 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-15 2.6E-20 150.6 31.0 250 132-469 147-401 (466)
191 PRK01742 tolB translocation pr 99.8 3.3E-17 7.2E-22 161.0 19.2 237 162-496 183-425 (429)
192 KOG1538 Uncharacterized conser 99.8 3.3E-17 7.1E-22 155.0 17.2 241 135-468 48-293 (1081)
193 KOG1517 Guanine nucleotide bin 99.8 9.1E-17 2E-21 159.5 20.9 258 140-469 1109-1382(1387)
194 KOG1523 Actin-related protein 99.7 3.2E-16 6.9E-21 136.3 20.3 215 140-405 10-238 (361)
195 KOG1240 Protein kinase contain 99.7 3.5E-16 7.5E-21 157.7 22.8 281 134-470 1042-1336(1431)
196 PF12265 CAF1C_H4-bd: Histone- 99.7 4.7E-19 1E-23 125.3 1.4 69 41-109 1-72 (74)
197 KOG1524 WD40 repeat-containing 99.7 1.7E-16 3.6E-21 146.8 17.5 201 153-449 75-275 (737)
198 KOG1963 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 148.7 25.2 266 137-469 202-539 (792)
199 KOG1523 Actin-related protein 99.7 2.8E-16 6.1E-21 136.6 17.6 220 198-469 12-237 (361)
200 PRK01742 tolB translocation pr 99.7 1.7E-15 3.7E-20 149.0 24.1 222 136-441 199-426 (429)
201 KOG0649 WD40 repeat protein [G 99.7 2.8E-14 6E-19 119.6 26.9 207 131-404 53-275 (325)
202 KOG2394 WD40 protein DMR-N9 [G 99.7 2.2E-15 4.8E-20 139.6 20.6 140 278-440 219-384 (636)
203 KOG0771 Prolactin regulatory e 99.7 5.6E-16 1.2E-20 139.8 15.9 202 200-468 148-354 (398)
204 KOG0322 G-protein beta subunit 99.7 5.4E-16 1.2E-20 131.3 14.4 241 186-496 5-303 (323)
205 KOG0771 Prolactin regulatory e 99.7 5.3E-16 1.1E-20 139.9 15.2 201 144-404 148-355 (398)
206 KOG1272 WD40-repeat-containing 99.7 3.7E-16 8.1E-21 142.2 12.0 259 142-496 131-389 (545)
207 KOG2139 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 127.8 21.6 274 141-470 99-385 (445)
208 PRK03629 tolB translocation pr 99.7 3.2E-14 6.9E-19 139.6 26.1 239 163-496 179-427 (429)
209 KOG1963 WD40 repeat protein [G 99.7 1.1E-14 2.5E-19 142.7 22.2 279 146-470 22-324 (792)
210 KOG0644 Uncharacterized conser 99.7 1.7E-16 3.7E-21 153.8 9.0 225 186-496 181-405 (1113)
211 KOG2321 WD40 repeat protein [G 99.7 5E-15 1.1E-19 138.3 17.5 302 97-495 5-322 (703)
212 KOG0280 Uncharacterized conser 99.7 4.5E-14 9.7E-19 121.7 21.4 269 131-468 61-333 (339)
213 PRK04922 tolB translocation pr 99.6 3.8E-14 8.2E-19 139.7 23.5 239 163-496 184-432 (433)
214 PRK11028 6-phosphogluconolacto 99.6 1.3E-13 2.8E-18 131.4 25.1 243 155-468 4-258 (330)
215 PRK05137 tolB translocation pr 99.6 1.5E-13 3.3E-18 135.7 26.3 239 163-496 182-432 (435)
216 KOG3881 Uncharacterized conser 99.6 2E-13 4.4E-18 122.2 23.8 251 140-468 55-320 (412)
217 KOG2110 Uncharacterized conser 99.6 3.7E-13 8E-18 119.7 23.4 235 142-471 7-251 (391)
218 PRK02889 tolB translocation pr 99.6 2.1E-13 4.5E-18 134.0 23.4 243 163-496 176-424 (427)
219 KOG2394 WD40 protein DMR-N9 [G 99.6 3.5E-14 7.7E-19 131.7 15.4 221 152-404 184-453 (636)
220 PF08662 eIF2A: Eukaryotic tra 99.6 1.8E-13 3.9E-18 118.4 18.9 159 282-470 9-181 (194)
221 KOG3881 Uncharacterized conser 99.6 2.4E-13 5.2E-18 121.7 19.0 213 139-405 104-322 (412)
222 PRK03629 tolB translocation pr 99.6 5E-12 1.1E-16 124.2 29.3 219 137-440 195-427 (429)
223 KOG2139 WD40 repeat protein [G 99.5 6.2E-12 1.3E-16 111.6 24.6 216 140-404 140-384 (445)
224 KOG1354 Serine/threonine prote 99.5 5.9E-13 1.3E-17 117.2 17.6 289 139-469 24-360 (433)
225 KOG1272 WD40-repeat-containing 99.5 6.7E-15 1.5E-19 134.1 5.6 193 199-469 132-324 (545)
226 PRK04922 tolB translocation pr 99.5 2.7E-12 5.9E-17 126.6 24.6 221 136-440 199-432 (433)
227 KOG0309 Conserved WD40 repeat- 99.5 9.3E-14 2E-18 133.5 13.1 279 130-473 14-344 (1081)
228 PRK05137 tolB translocation pr 99.5 1.4E-11 3.1E-16 121.7 28.9 202 135-404 196-413 (435)
229 KOG1334 WD40 repeat protein [G 99.5 1.4E-13 3.1E-18 126.3 13.4 229 186-468 133-366 (559)
230 KOG2110 Uncharacterized conser 99.5 2.4E-11 5.2E-16 108.3 26.6 196 143-406 49-251 (391)
231 PRK02889 tolB translocation pr 99.5 3.9E-12 8.5E-17 125.0 24.1 228 136-441 191-425 (427)
232 PF08662 eIF2A: Eukaryotic tra 99.5 1.3E-12 2.9E-17 113.0 17.5 114 277-404 58-180 (194)
233 KOG2111 Uncharacterized conser 99.5 9.1E-11 2E-15 102.7 26.1 176 164-405 76-258 (346)
234 TIGR02800 propeller_TolB tol-p 99.5 2E-11 4.3E-16 120.7 25.3 237 163-495 170-417 (417)
235 PRK04792 tolB translocation pr 99.5 1.7E-11 3.7E-16 120.9 24.6 238 164-496 199-446 (448)
236 KOG1240 Protein kinase contain 99.5 5E-12 1.1E-16 128.3 20.5 225 186-469 1039-1274(1431)
237 KOG4497 Uncharacterized conser 99.5 6.5E-12 1.4E-16 110.1 18.4 277 141-469 49-392 (447)
238 KOG2111 Uncharacterized conser 99.5 7.2E-11 1.6E-15 103.3 24.7 167 133-356 87-258 (346)
239 KOG1409 Uncharacterized conser 99.5 4.9E-12 1.1E-16 111.6 17.5 216 134-405 18-272 (404)
240 KOG0280 Uncharacterized conser 99.5 5.9E-12 1.3E-16 108.8 17.6 236 162-470 45-286 (339)
241 PRK00178 tolB translocation pr 99.5 2.9E-11 6.2E-16 119.7 25.2 238 164-496 180-427 (430)
242 PF10282 Lactonase: Lactonase, 99.4 9.3E-10 2E-14 105.1 33.6 306 86-468 1-322 (345)
243 PF02239 Cytochrom_D1: Cytochr 99.4 4.9E-11 1.1E-15 113.7 22.8 266 132-469 27-348 (369)
244 COG2706 3-carboxymuconate cycl 99.4 1.9E-09 4E-14 96.7 30.9 296 84-470 2-323 (346)
245 KOG4547 WD40 repeat-containing 99.4 3.6E-11 7.8E-16 113.6 21.1 196 150-405 2-222 (541)
246 TIGR02800 propeller_TolB tol-p 99.4 3E-10 6.6E-15 112.2 28.4 201 135-403 184-397 (417)
247 KOG1354 Serine/threonine prote 99.4 6.2E-12 1.3E-16 110.9 14.1 236 130-407 74-363 (433)
248 KOG4547 WD40 repeat-containing 99.4 2.5E-11 5.4E-16 114.7 18.7 211 206-469 3-221 (541)
249 KOG4497 Uncharacterized conser 99.4 1.9E-12 4.1E-17 113.4 9.9 224 146-466 14-238 (447)
250 PRK01029 tolB translocation pr 99.4 2.2E-10 4.8E-15 112.2 24.7 187 278-496 230-424 (428)
251 KOG1064 RAVE (regulator of V-A 99.4 4.2E-12 9E-17 133.2 13.2 193 137-405 2205-2400(2439)
252 KOG2321 WD40 repeat protein [G 99.4 2.3E-11 4.9E-16 114.3 16.7 210 144-406 137-346 (703)
253 KOG2315 Predicted translation 99.4 2.9E-10 6.2E-15 106.9 23.4 121 321-470 268-392 (566)
254 PF02239 Cytochrom_D1: Cytochr 99.4 4.1E-10 8.9E-15 107.4 24.9 270 154-496 6-325 (369)
255 PRK04792 tolB translocation pr 99.3 3E-10 6.4E-15 112.1 24.1 220 137-440 214-446 (448)
256 KOG0974 WD-repeat protein WDR6 99.3 5.3E-11 1.2E-15 119.4 17.3 201 199-472 90-292 (967)
257 KOG0974 WD-repeat protein WDR6 99.3 4.9E-11 1.1E-15 119.7 16.8 194 152-407 98-292 (967)
258 PRK00178 tolB translocation pr 99.3 7.8E-10 1.7E-14 109.5 25.0 222 135-440 193-427 (430)
259 KOG1409 Uncharacterized conser 99.3 1.3E-10 2.9E-15 102.7 16.5 203 139-355 67-271 (404)
260 KOG2041 WD40 repeat protein [G 99.3 1E-10 2.2E-15 112.6 16.5 287 138-494 12-316 (1189)
261 PRK01029 tolB translocation pr 99.2 4.5E-09 9.8E-14 103.0 25.7 205 139-404 183-404 (428)
262 KOG2314 Translation initiation 99.2 3.6E-09 7.9E-14 99.4 23.4 302 130-469 240-574 (698)
263 COG5170 CDC55 Serine/threonine 99.2 2.3E-10 4.9E-15 99.8 14.4 254 139-408 25-314 (460)
264 KOG0309 Conserved WD40 repeat- 99.2 9.4E-11 2E-15 113.2 12.7 267 57-404 60-340 (1081)
265 KOG4714 Nucleoporin [Nuclear s 99.2 4.8E-10 1E-14 95.5 14.2 212 143-404 39-255 (319)
266 COG5170 CDC55 Serine/threonine 99.2 2.6E-10 5.6E-15 99.5 11.0 223 198-469 28-310 (460)
267 KOG4190 Uncharacterized conser 99.2 1.5E-10 3.2E-15 108.4 10.1 219 132-404 727-949 (1034)
268 KOG1064 RAVE (regulator of V-A 99.2 1.6E-10 3.4E-15 121.7 11.3 187 198-469 2210-2399(2439)
269 PLN02919 haloacid dehalogenase 99.1 5.3E-08 1.1E-12 105.2 28.9 286 144-470 571-890 (1057)
270 KOG4532 WD40-like repeat conta 99.1 2.3E-08 4.9E-13 85.9 20.0 226 153-447 84-319 (344)
271 COG5354 Uncharacterized protei 99.1 7.8E-08 1.7E-12 89.8 23.8 289 135-469 67-396 (561)
272 KOG4532 WD40-like repeat conta 99.0 8.6E-08 1.9E-12 82.4 20.3 200 208-470 84-284 (344)
273 PF10282 Lactonase: Lactonase, 99.0 5.8E-07 1.2E-11 86.0 28.0 240 163-468 13-275 (345)
274 PF04762 IKI3: IKI3 family; I 99.0 2.7E-07 5.8E-12 98.0 27.4 245 139-405 74-335 (928)
275 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.3E-06 2.8E-11 81.7 28.9 247 148-482 53-338 (352)
276 KOG2695 WD40 repeat protein [G 99.0 2.7E-09 5.8E-14 94.6 9.6 123 277-405 251-378 (425)
277 KOG1912 WD40 repeat protein [G 99.0 1.1E-07 2.3E-12 93.2 21.2 251 139-469 14-305 (1062)
278 KOG2314 Translation initiation 99.0 1.6E-07 3.4E-12 88.7 21.3 279 144-469 214-526 (698)
279 KOG2315 Predicted translation 99.0 1.9E-07 4.2E-12 88.3 21.2 207 132-404 157-391 (566)
280 KOG3914 WD repeat protein WDR4 98.9 2.9E-08 6.3E-13 90.1 14.0 166 142-369 64-232 (390)
281 KOG1008 Uncharacterized conser 98.9 1.2E-09 2.5E-14 104.5 5.2 247 139-442 55-315 (783)
282 KOG4714 Nucleoporin [Nuclear s 98.9 9.9E-09 2.1E-13 87.6 10.0 220 191-469 31-255 (319)
283 PLN02919 haloacid dehalogenase 98.9 4.2E-07 9.2E-12 98.3 24.9 224 143-405 626-890 (1057)
284 COG2706 3-carboxymuconate cycl 98.9 3E-06 6.5E-11 76.5 25.4 244 162-469 15-275 (346)
285 KOG4190 Uncharacterized conser 98.9 8.7E-09 1.9E-13 96.8 9.8 173 189-405 729-908 (1034)
286 PF04762 IKI3: IKI3 family; I 98.9 7.4E-07 1.6E-11 94.7 24.3 270 139-468 119-456 (928)
287 PRK04043 tolB translocation pr 98.8 2.1E-06 4.6E-11 83.8 24.8 195 198-468 189-400 (419)
288 PF08450 SGL: SMP-30/Gluconola 98.8 5.3E-06 1.1E-10 75.4 25.9 227 145-450 4-245 (246)
289 PRK04043 tolB translocation pr 98.8 6.3E-06 1.4E-10 80.4 27.6 194 141-404 188-401 (419)
290 KOG3914 WD repeat protein WDR4 98.8 5.1E-08 1.1E-12 88.5 11.9 157 281-468 65-223 (390)
291 COG5354 Uncharacterized protei 98.8 2.5E-06 5.3E-11 80.1 22.8 236 139-405 31-308 (561)
292 PF15492 Nbas_N: Neuroblastoma 98.8 1.8E-06 3.9E-11 75.6 19.2 202 143-405 46-261 (282)
293 KOG1920 IkappaB kinase complex 98.7 3.7E-06 8E-11 87.0 23.9 236 141-405 69-324 (1265)
294 COG4946 Uncharacterized protei 98.7 3E-06 6.4E-11 78.8 20.5 173 148-388 327-504 (668)
295 KOG2695 WD40 repeat protein [G 98.7 4.8E-08 1E-12 86.9 8.0 155 295-483 228-385 (425)
296 KOG2041 WD40 repeat protein [G 98.7 1E-07 2.2E-12 92.5 10.4 172 198-404 16-187 (1189)
297 KOG2066 Vacuolar assembly/sort 98.7 1.2E-06 2.5E-11 86.7 17.7 187 139-404 38-234 (846)
298 COG4946 Uncharacterized protei 98.7 1.6E-05 3.5E-10 74.1 24.0 265 135-469 354-655 (668)
299 PF15492 Nbas_N: Neuroblastoma 98.7 5E-05 1.1E-09 66.8 25.1 153 146-345 3-168 (282)
300 KOG1008 Uncharacterized conser 98.7 1.3E-08 2.8E-13 97.5 3.4 208 199-470 59-277 (783)
301 KOG1645 RING-finger-containing 98.7 1.3E-06 2.7E-11 79.6 15.6 161 186-393 184-351 (463)
302 KOG2114 Vacuolar assembly/sort 98.6 8.4E-06 1.8E-10 81.4 21.3 204 142-405 27-245 (933)
303 PF00400 WD40: WD domain, G-be 98.6 9.7E-08 2.1E-12 58.8 5.0 38 363-401 2-39 (39)
304 KOG1275 PAB-dependent poly(A) 98.6 1.3E-06 2.8E-11 87.5 15.2 186 152-401 146-340 (1118)
305 KOG0882 Cyclophilin-related pe 98.6 5.7E-07 1.2E-11 82.9 11.8 220 136-408 5-236 (558)
306 PF08450 SGL: SMP-30/Gluconola 98.6 9.9E-06 2.1E-10 73.7 19.8 216 201-494 4-232 (246)
307 KOG0882 Cyclophilin-related pe 98.6 1.6E-06 3.4E-11 80.1 13.6 228 194-483 8-240 (558)
308 KOG1645 RING-finger-containing 98.5 7.2E-06 1.6E-10 74.8 17.0 78 137-228 190-268 (463)
309 KOG1275 PAB-dependent poly(A) 98.5 2.4E-06 5.2E-11 85.6 15.1 155 280-468 179-342 (1118)
310 PF00400 WD40: WD domain, G-be 98.5 2.4E-07 5.3E-12 57.0 5.4 38 269-307 2-39 (39)
311 PF11768 DUF3312: Protein of u 98.4 6.1E-05 1.3E-09 72.8 21.8 151 280-441 207-368 (545)
312 KOG2066 Vacuolar assembly/sort 98.4 1.9E-05 4.2E-10 78.4 18.1 189 198-468 41-233 (846)
313 PF07433 DUF1513: Protein of u 98.4 0.00034 7.3E-09 63.5 24.6 205 141-405 5-249 (305)
314 KOG1832 HIV-1 Vpr-binding prot 98.4 1.6E-07 3.5E-12 93.2 3.7 205 185-483 1091-1300(1516)
315 KOG2114 Vacuolar assembly/sort 98.4 2.9E-05 6.3E-10 77.7 18.8 199 202-469 29-244 (933)
316 TIGR03300 assembly_YfgL outer 98.4 4.2E-05 9.1E-10 74.5 20.1 220 153-405 65-299 (377)
317 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00098 2.1E-08 62.7 27.4 111 285-405 200-332 (352)
318 PF11768 DUF3312: Protein of u 98.3 1.3E-05 2.8E-10 77.3 14.2 79 133-227 252-330 (545)
319 KOG1912 WD40 repeat protein [G 98.3 1.7E-05 3.6E-10 78.3 14.2 115 280-405 17-145 (1062)
320 TIGR03300 assembly_YfgL outer 98.3 0.00023 5E-09 69.3 21.9 220 152-405 104-340 (377)
321 KOG1832 HIV-1 Vpr-binding prot 98.3 2.2E-06 4.9E-11 85.5 7.3 175 268-486 1091-1267(1516)
322 PF06977 SdiA-regulated: SdiA- 98.2 0.00034 7.5E-09 62.5 20.3 209 138-400 19-247 (248)
323 KOG1920 IkappaB kinase complex 98.1 0.0012 2.7E-08 69.0 23.5 205 198-470 70-324 (1265)
324 PF13360 PQQ_2: PQQ-like domai 98.1 0.0016 3.5E-08 58.7 22.0 212 162-468 2-230 (238)
325 PF07433 DUF1513: Protein of u 98.1 0.00055 1.2E-08 62.2 18.2 203 200-468 8-247 (305)
326 PF08553 VID27: VID27 cytoplas 98.0 0.00036 7.8E-09 71.9 17.1 136 258-403 504-647 (794)
327 PF08596 Lgl_C: Lethal giant l 97.9 0.00036 7.7E-09 67.2 15.3 148 198-354 3-173 (395)
328 KOG2395 Protein involved in va 97.9 0.0022 4.7E-08 61.4 18.7 126 268-404 366-501 (644)
329 KOG3617 WD40 and TPR repeat-co 97.8 0.00071 1.5E-08 67.9 15.3 107 146-309 21-131 (1416)
330 COG0823 TolB Periplasmic compo 97.7 0.0018 3.8E-08 63.1 16.8 155 198-404 194-359 (425)
331 PF04053 Coatomer_WDAD: Coatom 97.7 0.0031 6.8E-08 61.7 17.3 140 198-404 34-174 (443)
332 PF13360 PQQ_2: PQQ-like domai 97.6 0.0071 1.5E-07 54.5 18.6 184 152-405 35-232 (238)
333 PF08596 Lgl_C: Lethal giant l 97.6 0.0078 1.7E-07 58.1 18.8 250 142-448 3-324 (395)
334 PRK11138 outer membrane biogen 97.6 0.0083 1.8E-07 58.7 19.5 98 292-405 257-355 (394)
335 COG0823 TolB Periplasmic compo 97.6 0.0068 1.5E-07 59.1 18.2 196 141-403 193-400 (425)
336 PRK02888 nitrous-oxide reducta 97.5 0.0063 1.4E-07 60.8 16.5 111 345-469 295-405 (635)
337 KOG3621 WD40 repeat-containing 97.5 0.00079 1.7E-08 66.4 10.1 118 325-469 35-155 (726)
338 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.027 5.9E-07 49.2 18.0 67 153-232 63-129 (354)
339 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0077 1.7E-07 45.7 13.0 102 281-398 2-109 (111)
340 PF08553 VID27: VID27 cytoplas 97.4 0.0038 8.2E-08 64.6 14.8 139 296-467 499-646 (794)
341 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.08 1.7E-06 50.9 23.0 276 140-451 42-348 (353)
342 KOG3621 WD40 repeat-containing 97.4 0.0069 1.5E-07 60.0 15.4 156 147-355 40-198 (726)
343 KOG4640 Anaphase-promoting com 97.3 0.0014 3E-08 63.9 9.4 76 322-406 19-95 (665)
344 KOG2444 WD40 repeat protein [G 97.3 0.00066 1.4E-08 57.9 6.3 106 292-405 71-179 (238)
345 smart00320 WD40 WD40 repeats. 97.3 0.0006 1.3E-08 40.7 4.7 38 363-401 3-40 (40)
346 PF04053 Coatomer_WDAD: Coatom 97.3 0.062 1.3E-06 52.8 20.5 226 139-468 31-262 (443)
347 KOG4640 Anaphase-promoting com 97.2 0.0017 3.7E-08 63.4 9.2 94 278-382 20-115 (665)
348 PRK02888 nitrous-oxide reducta 97.2 0.019 4E-07 57.5 16.4 110 287-404 285-405 (635)
349 smart00320 WD40 WD40 repeats. 97.2 0.00085 1.8E-08 40.0 4.8 36 271-307 5-40 (40)
350 COG3391 Uncharacterized conser 97.2 0.24 5.3E-06 48.1 25.6 199 200-468 77-283 (381)
351 PF00780 CNH: CNH domain; Int 97.2 0.19 4.2E-06 46.3 23.2 246 152-486 6-267 (275)
352 PF02897 Peptidase_S9_N: Proly 97.1 0.35 7.5E-06 47.7 27.3 247 143-468 126-404 (414)
353 COG3391 Uncharacterized conser 97.1 0.27 5.8E-06 47.8 23.0 198 143-405 76-285 (381)
354 PF04841 Vps16_N: Vps16, N-ter 97.1 0.28 6E-06 48.1 23.0 59 335-404 189-247 (410)
355 KOG3630 Nuclear pore complex, 97.1 0.016 3.4E-07 60.8 14.5 162 188-388 92-259 (1405)
356 KOG3617 WD40 and TPR repeat-co 97.1 0.0016 3.4E-08 65.6 7.2 72 280-355 61-132 (1416)
357 PF05694 SBP56: 56kDa selenium 97.1 0.14 3E-06 48.9 19.7 136 300-450 221-393 (461)
358 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.026 5.6E-07 42.9 12.1 68 326-404 2-72 (111)
359 PF03178 CPSF_A: CPSF A subuni 97.0 0.11 2.4E-06 49.2 19.7 116 276-404 86-203 (321)
360 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.04 8.8E-07 52.9 16.7 52 162-228 22-73 (353)
361 PF03178 CPSF_A: CPSF A subuni 97.0 0.079 1.7E-06 50.2 18.1 195 153-399 42-261 (321)
362 KOG4441 Proteins containing BT 96.9 0.092 2E-06 53.6 19.1 154 292-473 382-551 (571)
363 PRK11138 outer membrane biogen 96.9 0.14 3E-06 50.1 19.2 97 292-402 295-393 (394)
364 COG3386 Gluconolactonase [Carb 96.9 0.085 1.8E-06 49.1 16.4 199 201-468 29-243 (307)
365 PF06977 SdiA-regulated: SdiA- 96.8 0.16 3.5E-06 45.6 17.0 175 272-468 15-201 (248)
366 PF06433 Me-amine-dh_H: Methyl 96.7 0.29 6.4E-06 45.4 18.4 165 287-484 143-330 (342)
367 KOG2079 Vacuolar assembly/sort 96.7 0.0086 1.9E-07 62.3 9.1 65 335-405 98-162 (1206)
368 COG3204 Uncharacterized protei 96.7 0.41 8.9E-06 43.1 18.2 175 137-355 82-264 (316)
369 COG3386 Gluconolactonase [Carb 96.6 0.59 1.3E-05 43.6 24.1 151 280-451 112-276 (307)
370 KOG1916 Nuclear protein, conta 96.6 0.00085 1.8E-08 68.0 1.3 185 138-407 130-327 (1283)
371 KOG4649 PQQ (pyrrolo-quinoline 96.5 0.19 4.2E-06 44.1 15.1 109 285-405 17-125 (354)
372 PHA02713 hypothetical protein; 96.5 0.069 1.5E-06 54.6 14.4 93 302-404 433-534 (557)
373 PF12894 Apc4_WD40: Anaphase-p 96.5 0.01 2.3E-07 37.5 5.3 32 139-171 10-41 (47)
374 cd00216 PQQ_DH Dehydrogenases 96.4 1.3 2.7E-05 44.8 22.6 74 155-235 63-137 (488)
375 PF02897 Peptidase_S9_N: Proly 96.3 1.1 2.4E-05 44.2 21.6 205 199-468 126-357 (414)
376 KOG2395 Protein involved in va 96.3 0.08 1.7E-06 51.1 12.3 144 292-468 347-500 (644)
377 KOG2444 WD40 repeat protein [G 96.3 0.011 2.4E-07 50.7 6.0 145 293-470 32-179 (238)
378 KOG2079 Vacuolar assembly/sort 96.2 0.02 4.3E-07 59.8 8.4 101 292-403 100-203 (1206)
379 PRK13616 lipoprotein LpqB; Pro 96.2 0.23 5.1E-06 50.8 16.2 140 279-444 350-510 (591)
380 KOG4441 Proteins containing BT 96.1 0.23 5E-06 50.8 15.4 95 292-396 429-534 (571)
381 PF10647 Gmad1: Lipoprotein Lp 95.9 1.2 2.6E-05 40.4 18.0 118 280-399 67-192 (253)
382 PF12894 Apc4_WD40: Anaphase-p 95.9 0.028 6E-07 35.6 5.1 32 322-354 10-41 (47)
383 KOG1897 Damage-specific DNA bi 95.6 3.7 8E-05 43.4 21.5 164 293-493 686-875 (1096)
384 PF15390 DUF4613: Domain of un 95.6 0.3 6.5E-06 48.2 12.9 122 276-403 54-186 (671)
385 PHA02713 hypothetical protein; 95.4 0.39 8.5E-06 49.2 14.1 51 292-345 353-408 (557)
386 PHA03098 kelch-like protein; P 95.4 1.4 2.9E-05 45.2 18.2 103 292-404 391-512 (534)
387 PF05694 SBP56: 56kDa selenium 95.4 2 4.3E-05 41.4 17.4 168 284-470 135-344 (461)
388 PF10313 DUF2415: Uncharacteri 95.3 0.059 1.3E-06 33.0 4.8 33 141-173 1-35 (43)
389 PF04841 Vps16_N: Vps16, N-ter 95.3 3.2 6.8E-05 40.8 22.3 87 285-385 185-272 (410)
390 PF10647 Gmad1: Lipoprotein Lp 95.3 1.5 3.3E-05 39.8 16.3 156 280-450 25-185 (253)
391 COG3204 Uncharacterized protei 95.3 2.1 4.6E-05 38.7 18.5 168 192-404 82-264 (316)
392 PF12234 Rav1p_C: RAVE protein 95.3 0.77 1.7E-05 46.8 15.4 112 336-468 41-156 (631)
393 PF14583 Pectate_lyase22: Olig 95.3 2.8 6.2E-05 39.9 22.7 70 147-229 42-113 (386)
394 PRK13616 lipoprotein LpqB; Pro 95.0 3.5 7.6E-05 42.4 19.6 106 278-395 447-560 (591)
395 PF10313 DUF2415: Uncharacteri 94.9 0.11 2.3E-06 31.9 5.0 33 279-311 1-35 (43)
396 COG3490 Uncharacterized protei 94.7 3.1 6.7E-05 37.5 18.4 213 135-405 62-312 (366)
397 PF14870 PSII_BNR: Photosynthe 94.6 3.1 6.8E-05 38.6 16.4 115 275-397 141-255 (302)
398 KOG1916 Nuclear protein, conta 94.6 0.067 1.4E-06 54.9 5.7 125 273-407 127-269 (1283)
399 PF14870 PSII_BNR: Photosynthe 94.5 2.2 4.7E-05 39.7 15.1 157 138-351 142-301 (302)
400 KOG3630 Nuclear pore complex, 94.5 0.51 1.1E-05 50.2 11.9 150 280-448 102-261 (1405)
401 PF12234 Rav1p_C: RAVE protein 94.5 0.95 2.1E-05 46.2 13.6 121 279-404 30-157 (631)
402 KOG4499 Ca2+-binding protein R 94.1 3.6 7.9E-05 35.9 14.3 141 323-494 108-261 (310)
403 PF10168 Nup88: Nuclear pore c 94.1 5.3 0.00012 42.0 18.6 95 132-228 76-181 (717)
404 PRK10115 protease 2; Provision 94.0 9.7 0.00021 40.3 22.6 74 282-355 175-256 (686)
405 PF08728 CRT10: CRT10; InterP 93.9 2.2 4.7E-05 44.2 14.8 175 153-353 49-245 (717)
406 PHA02790 Kelch-like protein; P 93.8 2.4 5.2E-05 42.7 15.3 100 292-404 364-471 (480)
407 PHA03098 kelch-like protein; P 93.5 2.9 6.4E-05 42.8 15.7 103 292-404 344-465 (534)
408 PF00780 CNH: CNH domain; Int 93.4 6.3 0.00014 36.2 19.5 117 280-405 37-167 (275)
409 COG3490 Uncharacterized protei 93.0 1.1 2.3E-05 40.3 9.7 102 281-388 70-177 (366)
410 KOG2247 WD40 repeat-containing 92.9 0.017 3.6E-07 55.1 -1.6 143 201-396 39-181 (615)
411 PF10168 Nup88: Nuclear pore c 92.9 14 0.00031 38.9 23.0 38 276-313 144-183 (717)
412 PF15390 DUF4613: Domain of un 92.9 2 4.3E-05 42.7 12.1 129 135-310 51-187 (671)
413 TIGR02604 Piru_Ver_Nterm putat 92.5 5.4 0.00012 38.6 15.1 109 279-392 14-142 (367)
414 TIGR02604 Piru_Ver_Nterm putat 92.4 6.6 0.00014 37.9 15.5 107 274-392 67-202 (367)
415 PF08728 CRT10: CRT10; InterP 92.4 2.9 6.2E-05 43.3 13.1 128 142-308 102-245 (717)
416 COG5276 Uncharacterized conser 91.9 9.7 0.00021 34.6 19.6 141 278-443 86-226 (370)
417 PF06433 Me-amine-dh_H: Methyl 91.5 12 0.00026 35.1 19.4 106 293-405 197-322 (342)
418 COG5167 VID27 Protein involved 91.3 3.9 8.4E-05 40.0 11.8 130 263-404 495-633 (776)
419 KOG4499 Ca2+-binding protein R 91.1 5.1 0.00011 35.0 11.3 107 279-392 158-274 (310)
420 PF14727 PHTB1_N: PTHB1 N-term 90.8 17 0.00037 35.5 25.6 163 150-356 34-206 (418)
421 PHA02790 Kelch-like protein; P 90.8 16 0.00035 36.8 16.8 100 292-404 320-424 (480)
422 COG5167 VID27 Protein involved 90.3 7.3 0.00016 38.2 12.6 139 293-468 482-632 (776)
423 PF12657 TFIIIC_delta: Transcr 89.6 4.2 9.2E-05 34.4 9.9 32 279-310 86-122 (173)
424 PRK13684 Ycf48-like protein; P 89.3 20 0.00044 34.1 17.1 156 140-353 172-330 (334)
425 COG4590 ABC-type uncharacteriz 89.3 9.5 0.00021 36.8 12.4 167 274-470 216-388 (733)
426 KOG4460 Nuclear pore complex, 89.2 7.3 0.00016 38.3 11.8 83 324-407 104-202 (741)
427 KOG2377 Uncharacterized conser 89.1 10 0.00022 36.6 12.5 108 276-392 64-173 (657)
428 PF07569 Hira: TUP1-like enhan 88.5 2.8 6E-05 37.1 8.2 68 335-404 21-96 (219)
429 PF07676 PD40: WD40-like Beta 88.2 2.5 5.5E-05 25.2 5.6 32 369-400 5-38 (39)
430 PF12768 Rax2: Cortical protei 87.8 21 0.00044 32.9 13.6 78 277-355 35-124 (281)
431 cd00216 PQQ_DH Dehydrogenases 87.5 35 0.00075 34.5 22.6 96 293-405 303-426 (488)
432 PF14761 HPS3_N: Hermansky-Pud 87.4 14 0.00031 32.0 11.5 107 293-405 30-165 (215)
433 KOG2377 Uncharacterized conser 87.3 11 0.00024 36.5 11.5 99 370-495 64-162 (657)
434 PF12657 TFIIIC_delta: Transcr 87.2 5.4 0.00012 33.8 9.0 32 373-404 86-122 (173)
435 PF14583 Pectate_lyase22: Olig 86.8 30 0.00066 33.2 15.7 114 283-406 85-225 (386)
436 KOG2247 WD40 repeat-containing 86.6 0.14 2.9E-06 49.2 -1.1 137 322-496 33-169 (615)
437 KOG4460 Nuclear pore complex, 86.6 10 0.00022 37.4 11.1 78 279-357 104-201 (741)
438 KOG2280 Vacuolar assembly/sort 86.1 46 0.001 34.6 16.9 70 141-227 44-113 (829)
439 PLN02153 epithiospecifier prot 86.1 32 0.0007 32.8 17.2 22 152-173 32-60 (341)
440 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.0 44 0.00094 34.2 24.5 21 292-312 316-336 (527)
441 KOG3616 Selective LIM binding 85.8 13 0.00029 38.2 11.8 30 198-227 16-45 (1636)
442 PF14761 HPS3_N: Hermansky-Pud 85.6 23 0.00051 30.8 13.8 117 337-470 29-165 (215)
443 PRK10115 protease 2; Provision 85.3 55 0.0012 34.7 30.3 71 142-228 128-209 (686)
444 COG4590 ABC-type uncharacteriz 85.0 8.9 0.00019 37.0 9.7 167 139-355 219-387 (733)
445 PF14655 RAB3GAP2_N: Rab3 GTPa 84.5 14 0.00031 36.0 11.3 91 270-369 299-407 (415)
446 PF05096 Glu_cyclase_2: Glutam 84.1 32 0.0007 31.1 21.9 191 198-449 46-249 (264)
447 PF14655 RAB3GAP2_N: Rab3 GTPa 83.6 15 0.00032 36.0 10.9 47 321-374 305-351 (415)
448 PF11635 Med16: Mediator compl 83.1 72 0.0016 34.3 20.7 73 324-398 260-345 (753)
449 PF10214 Rrn6: RNA polymerase 83.1 73 0.0016 34.4 21.1 127 276-405 77-234 (765)
450 PRK13684 Ycf48-like protein; P 82.7 45 0.00097 31.7 17.0 108 278-398 172-283 (334)
451 PLN02193 nitrile-specifier pro 81.9 60 0.0013 32.6 15.1 62 292-356 280-353 (470)
452 PF07569 Hira: TUP1-like enhan 81.3 11 0.00024 33.3 8.6 65 288-355 20-96 (219)
453 KOG1900 Nuclear pore complex, 81.1 33 0.00072 38.0 13.2 75 277-356 177-274 (1311)
454 PF07995 GSDH: Glucose / Sorbo 81.0 14 0.00031 35.1 9.8 26 199-225 4-29 (331)
455 KOG1983 Tomosyn and related SN 80.9 38 0.00081 37.5 14.0 38 135-173 30-67 (993)
456 PF07995 GSDH: Glucose / Sorbo 80.7 8.4 0.00018 36.6 8.2 114 325-452 3-134 (331)
457 COG5290 IkappaB kinase complex 80.3 82 0.0018 33.2 17.5 72 326-404 249-325 (1243)
458 PLN00033 photosystem II stabil 79.7 64 0.0014 31.5 16.6 68 279-351 328-396 (398)
459 PF14781 BBS2_N: Ciliary BBSom 79.7 29 0.00064 27.6 13.2 110 284-404 4-126 (136)
460 KOG1900 Nuclear pore complex, 79.0 29 0.00063 38.4 11.9 158 297-469 95-273 (1311)
461 TIGR03118 PEPCTERM_chp_1 conse 78.7 56 0.0012 30.3 12.9 124 279-404 23-171 (336)
462 TIGR03606 non_repeat_PQQ dehyd 77.3 80 0.0017 31.4 14.5 57 323-384 29-90 (454)
463 PF14727 PHTB1_N: PTHB1 N-term 76.9 79 0.0017 31.1 24.6 137 56-227 63-205 (418)
464 PF14781 BBS2_N: Ciliary BBSom 76.8 36 0.00079 27.1 12.6 116 202-355 4-126 (136)
465 PLN00033 photosystem II stabil 76.3 80 0.0017 30.9 16.8 107 281-401 241-354 (398)
466 TIGR02276 beta_rpt_yvtn 40-res 76.2 14 0.0003 22.1 5.8 24 382-405 1-24 (42)
467 PF05096 Glu_cyclase_2: Glutam 75.9 62 0.0013 29.4 22.4 194 131-392 33-250 (264)
468 PF07676 PD40: WD40-like Beta 75.7 12 0.00025 22.2 5.0 31 276-306 6-38 (39)
469 TIGR02276 beta_rpt_yvtn 40-res 74.4 14 0.00031 22.1 5.4 25 288-312 1-25 (42)
470 PF13449 Phytase-like: Esteras 73.3 85 0.0018 29.7 21.7 170 280-452 86-309 (326)
471 PF01731 Arylesterase: Arylest 73.2 15 0.00032 26.8 5.8 31 374-404 55-85 (86)
472 PLN02193 nitrile-specifier pro 72.2 1.1E+02 0.0025 30.7 14.8 62 292-356 330-412 (470)
473 PF13449 Phytase-like: Esteras 71.8 92 0.002 29.5 18.2 169 279-468 20-249 (326)
474 PF12768 Rax2: Cortical protei 71.7 79 0.0017 29.2 11.5 95 301-405 16-125 (281)
475 KOG3616 Selective LIM binding 71.7 10 0.00023 38.9 6.2 71 323-404 14-84 (1636)
476 PF11715 Nup160: Nucleoporin N 71.1 6.3 0.00014 40.5 4.9 79 152-230 157-252 (547)
477 TIGR03606 non_repeat_PQQ dehyd 71.0 1.2E+02 0.0025 30.3 15.3 61 272-333 23-88 (454)
478 PF11715 Nup160: Nucleoporin N 70.8 16 0.00035 37.6 7.8 64 292-355 159-249 (547)
479 KOG3522 Predicted guanine nucl 69.1 17 0.00038 38.0 7.2 135 293-447 549-685 (925)
480 smart00036 CNH Domain found in 68.4 1E+02 0.0023 28.8 13.3 62 337-405 14-75 (302)
481 KOG1897 Damage-specific DNA bi 67.5 1.9E+02 0.0041 31.5 22.7 121 278-404 530-660 (1096)
482 COG5276 Uncharacterized conser 67.4 1E+02 0.0023 28.4 26.6 166 133-357 79-244 (370)
483 PF12341 DUF3639: Protein of u 67.1 18 0.00038 19.8 3.8 26 324-352 2-27 (27)
484 KOG2714 SETA binding protein S 66.2 1.3E+02 0.0029 29.2 12.7 20 209-228 236-255 (465)
485 PF10214 Rrn6: RNA polymerase 64.6 2.1E+02 0.0046 30.9 28.1 237 89-355 29-277 (765)
486 PF08801 Nucleoporin_N: Nup133 64.3 53 0.0012 32.4 9.8 31 324-355 190-220 (422)
487 PF03088 Str_synth: Strictosid 62.1 53 0.0012 24.1 6.9 41 298-342 34-74 (89)
488 TIGR03548 mutarot_permut cycli 60.7 1.2E+02 0.0027 28.5 11.2 22 152-173 123-149 (323)
489 TIGR03118 PEPCTERM_chp_1 conse 59.5 1.5E+02 0.0033 27.6 24.1 213 143-405 25-281 (336)
490 KOG0918 Selenium-binding prote 59.0 1.8E+02 0.0038 28.1 17.4 109 294-406 222-345 (476)
491 TIGR03548 mutarot_permut cycli 55.9 1.8E+02 0.0039 27.3 17.9 62 292-355 125-195 (323)
492 PF10395 Utp8: Utp8 family; I 54.0 2.8E+02 0.0062 29.0 19.2 30 198-227 131-160 (670)
493 COG5290 IkappaB kinase complex 53.1 42 0.00092 35.1 6.6 95 283-386 251-350 (1243)
494 PRK14131 N-acetylneuraminic ac 51.9 2.3E+02 0.005 27.4 17.9 13 301-313 189-201 (376)
495 TIGR03075 PQQ_enz_alc_DH PQQ-d 51.3 2.9E+02 0.0063 28.3 21.1 26 208-233 120-145 (527)
496 TIGR03074 PQQ_membr_DH membran 50.2 3.6E+02 0.0078 29.1 15.2 204 152-369 259-486 (764)
497 KOG3522 Predicted guanine nucl 48.3 1.7E+02 0.0037 31.1 10.1 120 278-409 581-703 (925)
498 PF02333 Phytase: Phytase; In 48.2 2.7E+02 0.0058 27.0 20.4 124 279-405 156-292 (381)
499 PF01436 NHL: NHL repeat; Int 48.2 45 0.00098 18.1 4.2 25 375-400 4-28 (28)
500 PF03088 Str_synth: Strictosid 48.1 1.1E+02 0.0024 22.5 7.7 51 341-398 32-82 (89)
No 1
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=6.5e-75 Score=519.90 Aligned_cols=394 Identities=40% Similarity=0.727 Sum_probs=339.7
Q ss_pred ccccchhhhhccccCChhHhHhhhhCcCCCCcceEeccCCc--ccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcch
Q 010997 36 HQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQL--EQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRV 113 (496)
Q Consensus 36 ~~~~~~~~~~~w~~~~~~ly~~~~~~~~~wps~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~ 113 (496)
+++.|+|+|++||||+|+|||++++|.|+||||+|||+|++ +...+...|||++||||+++++|+|+|+++.++....
T Consensus 12 ~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~ 91 (422)
T KOG0264|consen 12 EQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDA 91 (422)
T ss_pred ccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCccc
Confidence 44589999999999999999999999999999999999984 4557778899999999999999999999987765421
Q ss_pred --hhhccccccCc----ccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCC
Q 010997 114 --AAAEHISQFNE----EARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP 187 (496)
Q Consensus 114 --~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 187 (496)
.+........+ .....++++.+.+.|.|+|++++++|+++.++|+++..+.|+|||..+........+ ..+|
T Consensus 92 ~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~P 169 (422)
T KOG0264|consen 92 QFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECRP 169 (422)
T ss_pred ccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--cCCC
Confidence 11111111111 123457888899999999999999999999999999999999999999876655443 5688
Q ss_pred ceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCC
Q 010997 188 DLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 266 (496)
Q Consensus 188 ~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (496)
...|.||++ .-++|+|++... +|++|+.|++|++||+...... ..
T Consensus 170 dl~L~gH~~-eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~ 215 (422)
T KOG0264|consen 170 DLRLKGHEK-EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE---------------------------------DK 215 (422)
T ss_pred ceEEEeecc-cccccccccccceeEeeccCCCcEEEEeccccccC---------------------------------Cc
Confidence 899999998 468999999744 8999999999999999854321 12
Q ss_pred CcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997 267 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 267 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg 346 (496)
...+...+.+|...|.+++|++....+|+++++|+.+.|||+|+..........+|...|+|++|+|+++.+|||||.|+
T Consensus 216 ~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 216 VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence 34556889999999999999999989999999999999999997443456667899999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (496)
+|+|||+|++. .+++++.+|...|.+|.|||+...+||+++.|+++.|||+...++++..+.+++ .|++++|.|
T Consensus 296 tV~LwDlRnL~-----~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d-gppEllF~H 369 (422)
T KOG0264|consen 296 TVALWDLRNLN-----KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED-GPPELLFIH 369 (422)
T ss_pred cEEEeechhcc-----cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc-CCcceeEEe
Confidence 99999999985 799999999999999999999999999999999999999999888887444444 899999999
Q ss_pred cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHH
Q 010997 427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV 478 (496)
Q Consensus 427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~ 478 (496)
.||...|.++.|+|+.+++++|+++| +.++||++.+.++++....
T Consensus 370 gGH~~kV~DfsWnp~ePW~I~SvaeD-------N~LqIW~~s~~i~~~e~~~ 414 (422)
T KOG0264|consen 370 GGHTAKVSDFSWNPNEPWTIASVAED-------NILQIWQMAENIYNPEDPE 414 (422)
T ss_pred cCcccccccccCCCCCCeEEEEecCC-------ceEEEeeccccccCccccC
Confidence 99999999999999999999999987 9999999999998876543
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-48 Score=339.47 Aligned_cols=309 Identities=21% Similarity=0.307 Sum_probs=263.8
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+.+|.++|.|++|+| ++..||+|+.|.++++||+.+. .|..+.++|.. .|.|++|+|||+.||||
T Consensus 110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~Te------------Tp~~t~KgH~~-WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTE------------TPLFTCKGHKN-WVLCVAWSPDGKKIASG 175 (480)
T ss_pred ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCC------------CcceeecCCcc-EEEEEEECCCcchhhcc
Confidence 4568999999999999 9999999999999999999998 88899999998 79999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccc------c--CCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAK------S--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
+.||+|++||..++......-..... . ...............++.+.+|+......+..+.+|+.+|+|++|
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence 99999999999887654322111100 0 000111123444567899999999999999999999999999999
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec-----------C----------------------
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN-----------P---------------------- 333 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s-----------p---------------------- 333 (496)
--+| ++++|+.|++|++|+...+. +...+++|...|+.++.+ |
T Consensus 256 GG~g--liySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 256 GGEG--LIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred cCCc--eEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 7665 89999999999999998887 788889999999999987 2
Q ss_pred --CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997 334 --LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411 (496)
Q Consensus 334 --~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~ 411 (496)
..+..|++|+.|.++.+|+.... .+++..+.+|..-|+.+.||||+++ +|+++-|..|++||.+++
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~-----kkpi~rmtgHq~lVn~V~fSPd~r~-IASaSFDkSVkLW~g~tG------ 399 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKS-----KKPITRMTGHQALVNHVSFSPDGRY-IASASFDKSVKLWDGRTG------ 399 (480)
T ss_pred hccCcceeEEecCCceEEEeccccc-----ccchhhhhchhhheeeEEECCCccE-EEEeecccceeeeeCCCc------
Confidence 12345999999999999998764 3688999999999999999999995 689999999999999986
Q ss_pred CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEE
Q 010997 412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS 491 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~ 491 (496)
+.+..++||...|+.++|+.+.+ |++ ||+.|.++++|+++ +.++...|.||...|.+
T Consensus 400 ---------k~lasfRGHv~~VYqvawsaDsR-LlV-------S~SkDsTLKvw~V~------tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 400 ---------KFLASFRGHVAAVYQVAWSADSR-LLV-------SGSKDSTLKVWDVR------TKKLKQDLPGHADEVFA 456 (480)
T ss_pred ---------chhhhhhhccceeEEEEeccCcc-EEE-------EcCCCceEEEEEee------eeeecccCCCCCceEEE
Confidence 66778999999999999999655 566 55556999999999 78899999999999999
Q ss_pred eccCC
Q 010997 492 CTSKP 496 (496)
Q Consensus 492 ~~~sP 496 (496)
++|+|
T Consensus 457 vDwsp 461 (480)
T KOG0271|consen 457 VDWSP 461 (480)
T ss_pred EEecC
Confidence 99998
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.9e-46 Score=329.44 Aligned_cols=268 Identities=24% Similarity=0.381 Sum_probs=245.0
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEE
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLS 213 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~s 213 (496)
.++-+.+|..+.|++ +++.||||+.+|.++||+.... ....+|.||.. .|.++.|+|. +..|+|
T Consensus 171 Q~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~------------~~~~~l~gH~~-~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQC------------NLLQTLRGHTS-RVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred hccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCc------------ceeEEEecccc-ceeeEEEccCCCccceee
Confidence 457788999999999 8999999999999999999887 66789999998 5899999997 558999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.||++++|++++. .++..+.+|...|..++|+|+| .+
T Consensus 237 ~s~Dgtvklw~~~~e----------------------------------------~~l~~l~gH~~RVs~VafHPsG-~~ 275 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQE----------------------------------------TPLQDLEGHLARVSRVAFHPSG-KF 275 (459)
T ss_pred eccCCceeeeccCCC----------------------------------------cchhhhhcchhhheeeeecCCC-ce
Confidence 999999999998742 3457889999999999999999 89
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
|+|++.|.+-++||++++. ......+|...|.+++|.| +|.+++||+.|..-+|||+|+ +.++..+.+|..
T Consensus 276 L~TasfD~tWRlWD~~tk~--ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k 346 (459)
T KOG0272|consen 276 LGTASFDSTWRLWDLETKS--ELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIK 346 (459)
T ss_pred eeecccccchhhcccccch--hhHhhcccccccceeEecC-CCceeeccCccchhheeeccc------CcEEEEeccccc
Confidence 9999999999999999988 4556679999999999999 999999999999999999999 899999999999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
+|.+|+|+|+|- .+||||.|++++|||++.. ..++...+|.+-|+.|.|+|..+++++|+|.|
T Consensus 347 ~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r---------------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD- 409 (459)
T KOG0272|consen 347 EILSVAFSPNGY-HLATGSSDNTCKVWDLRMR---------------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYD- 409 (459)
T ss_pred ceeeEeECCCce-EEeecCCCCcEEEeeeccc---------------ccceecccccchhhheEecccCCeEEEEcccC-
Confidence 999999999997 5799999999999999985 44777899999999999999888888866665
Q ss_pred CCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 454 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
++++||... +.++++.|.||.+.|.+|+.+|
T Consensus 410 ------~t~kiWs~~------~~~~~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 410 ------NTVKIWSTR------TWSPLKSLAGHEGKVISLDISP 440 (459)
T ss_pred ------cceeeecCC------CcccchhhcCCccceEEEEecc
Confidence 999999998 7999999999999999999876
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-44 Score=316.82 Aligned_cols=303 Identities=26% Similarity=0.379 Sum_probs=252.2
Q ss_pred cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 010997 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (496)
Q Consensus 93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~ 172 (496)
.+|+-++++++|++..-.| .....+|...|.|++|+| |++.||+|+.||+|++||..+
T Consensus 131 ~tGsGD~TvR~WD~~TeTp---------------------~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 131 VTGSGDTTVRLWDLDTETP---------------------LFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred EecCCCceEEeeccCCCCc---------------------ceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCC
Confidence 3567788888887654222 234568999999999999 999999999999999999988
Q ss_pred CCCccccCCCCCCCCceEEecCCCCcceeeeecC-----CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCc
Q 010997 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 247 (496)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-----~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 247 (496)
+. .....|.||.. .|++|+|.| ..++|++++.||+|+|||+..+.+......... ...
T Consensus 189 g~-----------~~g~~l~gH~K-~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-----~VT 251 (480)
T KOG0271|consen 189 GQ-----------QIGRALRGHKK-WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-----SVT 251 (480)
T ss_pred CC-----------cccccccCccc-ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-----ceE
Confidence 84 33457899998 799999976 356999999999999999987655443332221 112
Q ss_pred eeccC------CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc-----------cCC--------------------
Q 010997 248 IIKQS------PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC-----------PSS-------------------- 290 (496)
Q Consensus 248 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----------~~~-------------------- 290 (496)
++..+ ....+..+..|+...+...+.+.+|...|+.++.+ |.+
T Consensus 252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 22222 23556778889988899999999999999999887 222
Q ss_pred ----CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 291 ----AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 291 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
+..+++|++|.++.+|+....+.+ +....+|..-|+.+.|+| ++.++|+++.|..|++||.++ ++.+.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkp-i~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~t------Gk~la 403 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKP-ITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRT------GKFLA 403 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccc-hhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCC------cchhh
Confidence 225999999999999998776654 445569999999999999 999999999999999999999 99999
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
+|++|-.+|+.++|+.|.+ ||++|+.|.++++||+++. .+.+.+.||.+.|.++.|+|+|..++
T Consensus 404 sfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk---------------Kl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 404 SFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK---------------KLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred hhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee---------------eecccCCCCCceEEEEEecCCCceee
Confidence 9999999999999999988 7889999999999999985 67778899999999999999998876
Q ss_pred EEecCCCCCCCCCCeEEEee
Q 010997 447 VSVSDDCDSTGGGGTLQIWR 466 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~ 466 (496)
+||.|..+++|.
T Consensus 468 --------sggkdkv~~lw~ 479 (480)
T KOG0271|consen 468 --------SGGKDKVLRLWR 479 (480)
T ss_pred --------cCCCceEEEeec
Confidence 899999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-44 Score=320.29 Aligned_cols=249 Identities=23% Similarity=0.357 Sum_probs=227.7
Q ss_pred ceEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 132 KKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
.+..+.+|.+.|.++.|+|. ++.-+|||+.||++++|++++. .++..+.||.. .|..++|+|+|++
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e------------~~l~~l~gH~~-RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE------------TPLQDLEGHLA-RVSRVAFHPSGKF 275 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC------------cchhhhhcchh-hheeeeecCCCce
Confidence 35577899999999999997 4778999999999999999987 77889999997 6899999999999
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|+|++.|.+-++||++++.. +....||...|.+++|+|+|
T Consensus 276 L~TasfD~tWRlWD~~tk~E----------------------------------------lL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 276 LGTASFDSTWRLWDLETKSE----------------------------------------LLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred eeecccccchhhcccccchh----------------------------------------hHhhcccccccceeEecCCC
Confidence 99999999999999987543 24567899999999999999
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
.+++||+.|..-+|||+|++. ++..+.+|..+|..|+|+| +|..||||+.|++++|||+|. ...+.++.+
T Consensus 316 -SL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~------r~~ly~ipA 385 (459)
T KOG0272|consen 316 -SLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM------RSELYTIPA 385 (459)
T ss_pred -ceeeccCccchhheeecccCc--EEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecc------cccceeccc
Confidence 799999999999999999999 7888889999999999999 999999999999999999999 778999999
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
|.+-|+.|.|+|...++|+|++.|++++||..... .++.++.||.+.|.+++.++++.+++
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---------------~~~ksLaGHe~kV~s~Dis~d~~~i~---- 446 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---------------SPLKSLAGHEGKVISLDISPDSQAIA---- 446 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCCc---------------ccchhhcCCccceEEEEeccCCceEE----
Confidence 99999999999966668899999999999999886 67778999999999999999888766
Q ss_pred CCCCCCCCCCeEEEee
Q 010997 451 DDCDSTGGGGTLQIWR 466 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~ 466 (496)
|++.|+++++|.
T Consensus 447 ----t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 ----TSSFDRTIKLWR 458 (459)
T ss_pred ----EeccCceeeecc
Confidence 667779999996
No 6
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=1e-41 Score=298.76 Aligned_cols=358 Identities=28% Similarity=0.513 Sum_probs=274.8
Q ss_pred ChhHhHhhhhCcCCCCcceEeccCC-ccc--CCCcceEEEEEEeecCCCCCCeEEEEEEeccC-cchh---hhccccccC
Q 010997 51 VPVLYDWLANHNLVWPSLSCRWGPQ-LEQ--ATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK-PRVA---AAEHISQFN 123 (496)
Q Consensus 51 ~~~ly~~~~~~~~~wps~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~~~~---~~~~~~~~~ 123 (496)
.|..|.+++.....||||+++-.|+ +.. .......-+.-|||+.....|.|.|..+..+. .+.. ..+.-..-+
T Consensus 56 DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edd 135 (440)
T KOG0302|consen 56 DPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDD 135 (440)
T ss_pred CHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccc
Confidence 4779999999999999999997775 222 23332233445788988899999988776432 2211 111111112
Q ss_pred cccCCcccceEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccc----cCCCCCCCCceEEecCCCCc
Q 010997 124 EEARSPFVKKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHA----VLGATNSRPDLILTGHQDNA 198 (496)
Q Consensus 124 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~l~~h~~~~ 198 (496)
++.+.|. ...+.++|.+.|++++.++. +..+.|+-+..|.|+|||+........ .......+|+.++.+|.. .
T Consensus 136 edD~~P~-~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-E 213 (440)
T KOG0302|consen 136 EDDRKPQ-IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-E 213 (440)
T ss_pred hhhcccc-ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-c
Confidence 2222333 34577899999999999985 566888899999999999976533221 111245689999999997 5
Q ss_pred ceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 199 EFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 199 v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
-++|+|+|-. ..|+||..-+.|++|...++.-. .+. ..|.+|
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~--vd~-----------------------------------~Pf~gH 256 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK--VDQ-----------------------------------RPFTGH 256 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCcee--ecC-----------------------------------cccccc
Confidence 7999999953 36899999999999998764221 111 446789
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
+..|.+++|+|....+|++||.||+|+|||+|.+........++|.+.|+.|.|+. ...+||+|+.||+++|||+|+.+
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~ 335 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFK 335 (440)
T ss_pred ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhcc
Confidence 99999999999988999999999999999999985434444489999999999999 66799999999999999999977
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCC----CCCCCCCCeeEEEecCCCCCc
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG----PRTTNYPAGLFFQHAGHRDKV 433 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~V 433 (496)
. +.++..|+.|..+|++|.|+|....+|++++.|.+|.|||+.......... ......|++++|.|.|.. .|
T Consensus 336 ~---~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~ 411 (440)
T KOG0302|consen 336 S---GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EV 411 (440)
T ss_pred C---CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-Hh
Confidence 5 589999999999999999999988899999999999999998743311111 112347999999999865 58
Q ss_pred ceEEecCCCCcEEEEecCC
Q 010997 434 VDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 434 ~~~~~~p~~~~l~~s~s~d 452 (496)
..+.|+++.+.+++|++-|
T Consensus 412 KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 412 KEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred hhheeccCCCCeEEEeccc
Confidence 9999999999999987765
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-40 Score=318.49 Aligned_cols=269 Identities=25% Similarity=0.471 Sum_probs=229.5
Q ss_pred CCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCcc-------------------ccCCCCCCCC
Q 010997 127 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH-------------------AVLGATNSRP 187 (496)
Q Consensus 127 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~-------------------~~~~~~~~~~ 187 (496)
..|.+-...+..-...|+|..|++ +..+||.|..|..|++|.+.....+. ..........
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 345555555555567899999999 77899999999999999998532100 0111122234
Q ss_pred ceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 188 ~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
..++.||++ +|++..|+|+.++|++||.|++||+|.+.+..+
T Consensus 444 ~~~L~GH~G-PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~------------------------------------- 485 (707)
T KOG0263|consen 444 SRTLYGHSG-PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC------------------------------------- 485 (707)
T ss_pred eEEeecCCC-ceeeeeecccccceeeccCCcceeeeeccccee-------------------------------------
Confidence 456899998 899999999999999999999999999985433
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~ 347 (496)
+..+.+|..+|.+++|+|.| .+|||++.|++-++|...... ..+.+.+|-+.|.|++|+| +.+|+|+||.|.+
T Consensus 486 ---~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~--PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~t 558 (707)
T KOG0263|consen 486 ---LVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK--PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRT 558 (707)
T ss_pred ---EEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC--chhhhcccccccceEEECC-cccccccCCCCce
Confidence 36788999999999999999 999999999999999988766 6777889999999999999 9999999999999
Q ss_pred EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997 348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (496)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (496)
||+||..+ +..++.|.||.++|.+|+|||+|.+ ||+|+.||.|++||+... .++..+.
T Consensus 559 VRlWDv~~------G~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~---------------~~v~~l~ 616 (707)
T KOG0263|consen 559 VRLWDVST------GNSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLANG---------------SLVKQLK 616 (707)
T ss_pred EEEEEcCC------CcEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCCC---------------cchhhhh
Confidence 99999999 8999999999999999999999997 689999999999999985 5666788
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCC
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 471 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~ 471 (496)
+|.+.|.++.|+.+|..|+ +||.|++|++||+....
T Consensus 617 ~Ht~ti~SlsFS~dg~vLa--------sgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLA--------SGGADNSVRLWDLTKVI 652 (707)
T ss_pred cccCceeEEEEecCCCEEE--------ecCCCCeEEEEEchhhc
Confidence 9999999999999887655 77778999999997543
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-39 Score=273.07 Aligned_cols=275 Identities=21% Similarity=0.371 Sum_probs=228.4
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.....+|++.|..++..+.+.+++.+++.|.++.+|++...... ...++..+.||.. .|..+..+++|++.+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-------~G~~~r~~~GHsH-~v~dv~~s~dg~~al 79 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-------YGVPVRRLTGHSH-FVSDVVLSSDGNFAL 79 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-------cCceeeeeeccce-EecceEEccCCceEE
Confidence 34567899999999999988999999999999999999877322 2367889999988 699999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+++.|+++++||+.+++ +.+.|.+|...|.+++|++++ .
T Consensus 80 S~swD~~lrlWDl~~g~----------------------------------------~t~~f~GH~~dVlsva~s~dn-~ 118 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATGE----------------------------------------STRRFVGHTKDVLSVAFSTDN-R 118 (315)
T ss_pred eccccceEEEEEecCCc----------------------------------------EEEEEEecCCceEEEEecCCC-c
Confidence 99999999999998653 347899999999999999998 7
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeecc-CCCCeEEEEecCCC-CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLD-DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
.+++|+.|.+|++|++.... ....... +...|+|+.|+|.. ..+|++++.|++|++||+++ .+....+.+
T Consensus 119 qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~g 190 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIG 190 (315)
T ss_pred eeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccc
Confidence 89999999999999987665 2222222 37899999999932 78999999999999999999 788889999
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
|++.++.+++||||. +.++|+.||.+.+||++.. +.++ ..+|...|.+++|+|+..+|.+..+
T Consensus 191 h~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~---------------k~ly-sl~a~~~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEG---------------KNLY-SLEAFDIVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred ccccEEEEEECCCCC-EEecCCCCceEEEEEccCC---------------ceeE-eccCCCeEeeEEecCCceeEeeccC
Confidence 999999999999998 7899999999999999985 2233 3467889999999997766655433
Q ss_pred CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc---------cceEEEeccCC
Q 010997 451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF---------KAHVISCTSKP 496 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h---------~~~v~~~~~sP 496 (496)
..|+|||+. ++.++.+|..- .-.-.+||||+
T Consensus 254 ---------~sIkIwdl~------~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 254 ---------TSIKIWDLE------SKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred ---------CceEEEecc------chhhhhhccccccccccccCCcEEEEEEEcC
Confidence 569999999 56666665422 22356777764
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.8e-40 Score=280.28 Aligned_cols=274 Identities=22% Similarity=0.358 Sum_probs=237.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
+..+.+|+|+|+.++|+| ++.+||||+.|..|.+|++.... +-...+.+|.+ +|..+.|.++++.|+
T Consensus 40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdc-----------eN~~~lkgHsg-AVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDC-----------ENFWVLKGHSG-AVMELHGMRDGSHIL 106 (338)
T ss_pred hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccc-----------cceeeeccccc-eeEeeeeccCCCEEE
Confidence 456789999999999999 99999999999999999977653 34467889998 799999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+++.|++|+.||+++++.. +.+.+|..-|+.+.-+..|..
T Consensus 107 S~gtDk~v~~wD~~tG~~~----------------------------------------rk~k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRI----------------------------------------RKHKGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred EecCCceEEEEecccceee----------------------------------------ehhccccceeeecCccccCCe
Confidence 9999999999999876543 677889999999997778888
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
++.+++.|+++++||+|+.. .++++ .....++++.|.. .+..+.+|+-|+.|++||+|. ...++.+.+|.
T Consensus 147 lv~SgsdD~t~kl~D~R~k~--~~~t~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~------~d~~~~lsGh~ 216 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKE--AIKTF-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK------NDGLYTLSGHA 216 (338)
T ss_pred EEEecCCCceEEEEeecccc--hhhcc-ccceeEEEEEecc-cccceeeccccCceeeecccc------CcceEEeeccc
Confidence 99999999999999999877 55554 4567899999998 888999999999999999999 78999999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe-eEEEecCCCC----CcceEEecCCCCcEEE
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG-LFFQHAGHRD----KVVDFHWNASDPWTVV 447 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~----~V~~~~~~p~~~~l~~ 447 (496)
.+|+.+..+|+|.+++ +-+.|.++++||++.. .|.+ ++..+.||.. ....++|+|++..+-
T Consensus 217 DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~------------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~- 282 (338)
T KOG0265|consen 217 DTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPF------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT- 282 (338)
T ss_pred CceeeEEeccCCCccc-cccccceEEEEEeccc------------CCCCceEEEeecchhhhhhhcceeeccCCCCccc-
Confidence 9999999999999865 9999999999999875 2222 3555666543 356789999888755
Q ss_pred EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.|+.|..+++||.. ....+..++||.+.|..++|+|
T Consensus 283 -------ags~dr~vyvwd~~------~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 283 -------AGSADRFVYVWDTT------SRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred -------cccccceEEEeecc------cccEEEEcCCcceeEEEeeecC
Confidence 67778999999998 6788899999999999999998
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-39 Score=273.49 Aligned_cols=277 Identities=17% Similarity=0.306 Sum_probs=239.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..+.+|.+.|.++.|++ +.+.|++++.||.+.|||.-+. .....++-... .|..++|+|.|+++|+
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~Tt------------nK~haipl~s~-WVMtCA~sPSg~~VAc 114 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTT------------NKVHAIPLPSS-WVMTCAYSPSGNFVAC 114 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccc------------cceeEEecCce-eEEEEEECCCCCeEEe
Confidence 45569999999999999 8999999999999999998877 33444555555 7999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+-|+...||++.+.... ......+.+.+|.+-+.++.|-+++ .
T Consensus 115 GGLdN~Csiy~ls~~d~~----------------------------------g~~~v~r~l~gHtgylScC~f~dD~--~ 158 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAE----------------------------------GNVRVSRELAGHTGYLSCCRFLDDN--H 158 (343)
T ss_pred cCcCceeEEEeccccccc----------------------------------ccceeeeeecCccceeEEEEEcCCC--c
Confidence 999999999999743211 1112236788999999999998855 7
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
|+|++.|.++.+||+++++ ....+.+|.+.|.+++++|.+++.|++|+.|+..+|||+|. +.++++|.+|..
T Consensus 159 ilT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~------~~c~qtF~ghes 230 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS------GQCVQTFEGHES 230 (343)
T ss_pred eEecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC------cceeEeeccccc
Confidence 9999999999999999998 67888999999999999998899999999999999999999 899999999999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
.|++|.|.|+|.. ||+|++|+++++||++... ...++.+..-..+|++++|+..|+.|+
T Consensus 231 DINsv~ffP~G~a-fatGSDD~tcRlyDlRaD~-------------~~a~ys~~~~~~gitSv~FS~SGRlLf------- 289 (343)
T KOG0286|consen 231 DINSVRFFPSGDA-FATGSDDATCRLYDLRADQ-------------ELAVYSHDSIICGITSVAFSKSGRLLF------- 289 (343)
T ss_pred ccceEEEccCCCe-eeecCCCceeEEEeecCCc-------------EEeeeccCcccCCceeEEEcccccEEE-------
Confidence 9999999999985 7899999999999999841 134455555566899999999998877
Q ss_pred CCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 454 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|..|.++.+||.- .++.+..|.+|.++|.+|..+|
T Consensus 290 -agy~d~~c~vWDtl------k~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 290 -AGYDDFTCNVWDTL------KGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred -eeecCCceeEeecc------ccceEEEeeccCCeeEEEEECC
Confidence 55567999999998 6888899999999999999887
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=293.58 Aligned_cols=263 Identities=25% Similarity=0.493 Sum_probs=229.9
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
...|+.|+|.| +|+.|++|+..|.+.+|+.... .....++.|.. +|.++.|++++.+++||+.+|.
T Consensus 96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~f------------nFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSF------------NFETILQAHDS-PVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred ccceeeEEEcC-CCceeEeecccccEEEecCcee------------eHHHHhhhhcc-cceeEEEccCCCEEEEcCCCce
Confidence 45799999999 8899999999999999998665 44557788987 8999999999999999999999
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEEc
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
|++|+.+-.. ++.+.. |...|++++|+|.+ ..|++|+
T Consensus 162 iKyWqpnmnn-----------------------------------------Vk~~~ahh~eaIRdlafSpnD-skF~t~S 199 (464)
T KOG0284|consen 162 IKYWQPNMNN-----------------------------------------VKIIQAHHAEAIRDLAFSPND-SKFLTCS 199 (464)
T ss_pred EEecccchhh-----------------------------------------hHHhhHhhhhhhheeccCCCC-ceeEEec
Confidence 9999976321 133444 44899999999977 7899999
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l 378 (496)
+||+|+|||.+..+ ....+.+|.-.|.+++|+| ...+||+|+.|..|++||.++ +.++.++.+|+..|..+
T Consensus 200 dDg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl~~ 270 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVLAV 270 (464)
T ss_pred CCCeEEEEeccCCc--hhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC------cchhhhhhhccceEEEE
Confidence 99999999999887 4455689999999999999 889999999999999999999 89999999999999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG 458 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~ 458 (496)
.|+|++.+ |+++|.|..++++|++.. .-++...+|...|+++.|+|-.+.+++ +||.
T Consensus 271 ~f~~n~N~-Llt~skD~~~kv~DiR~m---------------kEl~~~r~Hkkdv~~~~WhP~~~~lft-------sgg~ 327 (464)
T KOG0284|consen 271 KFNPNGNW-LLTGSKDQSCKVFDIRTM---------------KELFTYRGHKKDVTSLTWHPLNESLFT-------SGGS 327 (464)
T ss_pred EEcCCCCe-eEEccCCceEEEEehhHh---------------HHHHHhhcchhhheeecccccccccee-------eccC
Confidence 99999975 679999999999999965 446678999999999999999998887 6777
Q ss_pred CCeEEEeecCCCCcCCchHHHHHH-HhccceEEEeccCC
Q 010997 459 GGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP 496 (496)
Q Consensus 459 Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~sP 496 (496)
||.|..|.+. ..+++.++ .+|.+.|++++|||
T Consensus 328 Dgsvvh~~v~------~~~p~~~i~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 328 DGSVVHWVVG------LEEPLGEIPPAHDGEIWSLAYHP 360 (464)
T ss_pred CCceEEEecc------ccccccCCCcccccceeeeeccc
Confidence 7999999998 23344443 58999999999998
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.3e-37 Score=261.24 Aligned_cols=252 Identities=23% Similarity=0.349 Sum_probs=215.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.+.+.-....|..++|+| .++++|+|+-|....||++.+..... ..+....+.+|++ -+.|+.|.+ ...|+
T Consensus 90 ~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g------~~~v~r~l~gHtg-ylScC~f~d-D~~il 160 (343)
T KOG0286|consen 90 VHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEG------NVRVSRELAGHTG-YLSCCRFLD-DNHIL 160 (343)
T ss_pred eeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccc------cceeeeeecCccc-eeEEEEEcC-CCceE
Confidence 334445667899999999 99999999999999999998653221 1244567899998 688999987 45799
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
|++.|.+..+||+++++. +..|.+|.+.|.++.++|..++
T Consensus 161 T~SGD~TCalWDie~g~~----------------------------------------~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 161 TGSGDMTCALWDIETGQQ----------------------------------------TQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred ecCCCceEEEEEcccceE----------------------------------------EEEecCCcccEEEEecCCCCCC
Confidence 999999999999987654 3788999999999999995558
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec--c
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--G 370 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~--~ 370 (496)
.|++|+.|+..+|||+|.+. +...+.+|+..|++|.|.| ++.-|++|+.|++.++||+|. ...+..+. .
T Consensus 201 tFvSg~cD~~aklWD~R~~~--c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa------D~~~a~ys~~~ 271 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQ--CVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA------DQELAVYSHDS 271 (343)
T ss_pred eEEecccccceeeeeccCcc--eeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecC------CcEEeeeccCc
Confidence 99999999999999999998 7889999999999999999 999999999999999999998 56666665 2
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
-..+|++++||-.|+.| .+|..|..+.+||.-+. +....+.||...|+++..+|+|..+.
T Consensus 272 ~~~gitSv~FS~SGRlL-fagy~d~~c~vWDtlk~---------------e~vg~L~GHeNRvScl~~s~DG~av~---- 331 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLL-FAGYDDFTCNVWDTLKG---------------ERVGVLAGHENRVSCLGVSPDGMAVA---- 331 (343)
T ss_pred ccCCceeEEEcccccEE-EeeecCCceeEeecccc---------------ceEEEeeccCCeeEEEEECCCCcEEE----
Confidence 34689999999999955 47888999999998774 56777889999999999999987655
Q ss_pred CCCCCCCCCCeEEEee
Q 010997 451 DDCDSTGGGGTLQIWR 466 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~ 466 (496)
||++|.+++||.
T Consensus 332 ----TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 ----TGSWDSTLRIWA 343 (343)
T ss_pred ----ecchhHheeecC
Confidence 899999999994
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-38 Score=282.52 Aligned_cols=281 Identities=21% Similarity=0.370 Sum_probs=233.4
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
-...|++++|+. +|.+||+|+.||.++||+.... ...+|..|.+ +|++|.|+..|+||++++.||
T Consensus 234 ~nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~-------------l~~tl~~Hkg-PI~slKWnk~G~yilS~~vD~ 298 (524)
T KOG0273|consen 234 SNKDVTSLDWNN-DGTLLATGSEDGEARIWNKDGN-------------LISTLGQHKG-PIFSLKWNKKGTYILSGGVDG 298 (524)
T ss_pred ccCCcceEEecC-CCCeEEEeecCcEEEEEecCch-------------hhhhhhccCC-ceEEEEEcCCCCEEEeccCCc
Confidence 446799999999 9999999999999999998765 3457888988 899999999999999999999
Q ss_pred cEEEEecCCccccccCCccccccCCC-CCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGS-SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
++.+||..++................ -.....+.....++.+.+.......|+.++.+|.++|.+|.|+|.+ .+|+++
T Consensus 299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~ 377 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASC 377 (524)
T ss_pred cEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEe
Confidence 99999998876655444332221110 1112223334556667777778888999999999999999999999 899999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--------CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
++|++++||.+.... ....+.+|...|..+.|+|. .+..+++++.|++|++||+.. +.++++|.
T Consensus 378 SdD~TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~------gv~i~~f~ 449 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES------GVPIHTLM 449 (524)
T ss_pred cCCCeeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC------CceeEeec
Confidence 999999999987766 67778899999999999884 356899999999999999999 89999999
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
.|..+|++|+|+|+|++ +|+|+.||.|+||+++.. .++.... -.+.|..++|+..|..+.++.
T Consensus 450 kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~---------------~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTG---------------KLVKSYQ-GTGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred cCCCceEEEEecCCCcE-EEecCCCCeeEeccccch---------------heeEeec-CCCeEEEEEEcCCCCEEEEEe
Confidence 99999999999999996 689999999999999885 3444444 356699999999998877766
Q ss_pred cCCCCCCCCCCeEEEeecC
Q 010997 450 SDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~ 468 (496)
+ ||.+++-|++
T Consensus 513 s--------d~~vcvldlr 523 (524)
T KOG0273|consen 513 S--------DGSVCVLDLR 523 (524)
T ss_pred c--------CCCceEEEec
Confidence 6 4889988875
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-38 Score=276.73 Aligned_cols=271 Identities=24% Similarity=0.424 Sum_probs=245.5
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
..++.+|...|+.+-|+| +-.++++++.|++|++||..++ +....++||++ .|..++|+..|++|+
T Consensus 101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg------------~~e~~LrGHt~-sv~di~~~a~Gk~l~ 166 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETG------------ELERSLRGHTD-SVFDISFDASGKYLA 166 (406)
T ss_pred hhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccch------------hhhhhhhcccc-ceeEEEEecCccEEE
Confidence 456778999999999999 8889999999999999999999 56778999999 599999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.|-.+.+||.++. .+.++.+.+|...|.++.|-|.| .
T Consensus 167 tcSsDl~~~LWd~~~~---------------------------------------~~c~ks~~gh~h~vS~V~f~P~g-d 206 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTF---------------------------------------FRCIKSLIGHEHGVSSVFFLPLG-D 206 (406)
T ss_pred ecCCccchhheeHHHH---------------------------------------HHHHHHhcCcccceeeEEEEecC-C
Confidence 9999999999998752 22336677899999999999999 8
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
++++++.|.+|+.|++.++. ++.++.+|...|..++.+. ++.++|+++.|.+|++|-+.+ ..+...++.|.
T Consensus 207 ~ilS~srD~tik~We~~tg~--cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hE 277 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGY--CVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT------KQCKAELREHE 277 (406)
T ss_pred eeeecccccceeEEecccce--eEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEecc------chhhhhhhccc
Confidence 99999999999999999998 7889999999999999999 999999999999999999998 77888999999
Q ss_pred CCEEEEEEcCC--------------CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997 373 AAVLCVQWSPD--------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 373 ~~i~~l~~sp~--------------~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
.+|-+++|.|. +..++++++.|++|++||+.++ .+++.+.||...|.+++|
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------------~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------------MCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------------eEEEEEecccceeeeeEE
Confidence 99999999874 1236789999999999999986 789999999999999999
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
+|.|.| |+||++| +++++||+. ..+++.+++.|..-|++++|+
T Consensus 343 ~p~Gky-i~ScaDD-------ktlrvwdl~------~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 343 SPGGKY-ILSCADD-------KTLRVWDLK------NLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred cCCCeE-EEEEecC-------CcEEEEEec------cceeeeccCCCcceeEEEecC
Confidence 997665 6677776 999999999 789999999999999999996
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=254.95 Aligned_cols=276 Identities=20% Similarity=0.379 Sum_probs=233.5
Q ss_pred eEEEecCC-CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 133 KHKTIIHP-GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 133 ~~~~~~h~-~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
...++.|+ +.|+++...| +++.||+++.- .|++||+.+. ...|+.++.+|+. -|+++.|..+|+.+
T Consensus 32 C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~q-hvRlyD~~S~----------np~Pv~t~e~h~k-NVtaVgF~~dgrWM 98 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITP-DKKDLAAAGNQ-HVRLYDLNSN----------NPNPVATFEGHTK-NVTAVGFQCDGRWM 98 (311)
T ss_pred EEEEEecCccceeeEEEcC-CcchhhhccCC-eeEEEEccCC----------CCCceeEEeccCC-ceEEEEEeecCeEE
Confidence 44566665 6899999999 88889888764 8999999987 3468899999988 48999999999999
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
+|||.||+++|||++...+ +....|..+|+++..+|+.
T Consensus 99 yTgseDgt~kIWdlR~~~~-----------------------------------------qR~~~~~spVn~vvlhpnQ- 136 (311)
T KOG0315|consen 99 YTGSEDGTVKIWDLRSLSC-----------------------------------------QRNYQHNSPVNTVVLHPNQ- 136 (311)
T ss_pred EecCCCceEEEEeccCccc-----------------------------------------chhccCCCCcceEEecCCc-
Confidence 9999999999999986332 2333567899999999998
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
..|++|..+|.|++||++...... .....-...|.++...| ++.+|+.+...|...+|++-.........++.+++.|
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred ceEEeecCCCcEEEEEccCCcccc-ccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 789999999999999999875322 22234557899999999 9999999999999999998874333335788899999
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
.+.|..+.+||++++ ||++|.|.+++||+.... ..+-..+.||...+.+++||.++.|++
T Consensus 215 ~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~--------------~kle~~l~gh~rWvWdc~FS~dg~Ylv----- 274 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF--------------FKLELVLTGHQRWVWDCAFSADGEYLV----- 274 (311)
T ss_pred cceEEEEEECCCCcE-EEeecCCceEEEEecCCc--------------eeeEEEeecCCceEEeeeeccCccEEE-----
Confidence 999999999999996 689999999999999874 234556789999999999999999988
Q ss_pred CCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997 452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~ 494 (496)
||+.|+.+++|+++ .++.++...+|-.+..+++.
T Consensus 275 ---Tassd~~~rlW~~~------~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 275 ---TASSDHTARLWDLS------AGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ---ecCCCCceeecccc------cCceeeecCCcccccEEEEe
Confidence 88888999999999 78888999999888777764
No 16
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-37 Score=258.99 Aligned_cols=257 Identities=25% Similarity=0.444 Sum_probs=222.9
Q ss_pred cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CC
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EP 209 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~ 209 (496)
+.....+.-.+.+..++|++...+.+++++.||+++|||+... ..|+..++.|.. +|+++.|++. +.
T Consensus 51 i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-----------s~Pi~~~kEH~~-EV~Svdwn~~~r~ 118 (311)
T KOG0277|consen 51 IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-----------SKPIHKFKEHKR-EVYSVDWNTVRRR 118 (311)
T ss_pred eEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-----------CcchhHHHhhhh-heEEeccccccce
Confidence 4455666778889999999988999999999999999996544 368889999998 6999999986 45
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
.++++|.|++|++|+...+ ..+.++.+|...|...+|+|.
T Consensus 119 ~~ltsSWD~TiKLW~~~r~----------------------------------------~Sv~Tf~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRP----------------------------------------NSVQTFNGHNSCIYQAAFSPH 158 (311)
T ss_pred eEEeeccCCceEeecCCCC----------------------------------------cceEeecCCccEEEEEecCCC
Confidence 7888899999999998643 234779999999999999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
.+++|++++.|+++++||+|...+. ..+..|...|.|+.|+..+.++|+||+.|+.|+.||+|++. .++..+.
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~gk~--~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~ 231 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSPGKF--MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELN 231 (311)
T ss_pred CCCeEEEccCCceEEEEEecCCCce--eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeec
Confidence 9999999999999999999988643 33678999999999999899999999999999999999975 7899999
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
+|.-+|..|.|||....+||+++.|-+++|||..... ..+....-|+.-|..+.|++..+..+|
T Consensus 232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------------s~~e~~~~HtEFv~g~Dws~~~~~~vA-- 295 (311)
T KOG0277|consen 232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--------------SAIETVDHHTEFVCGLDWSLFDPGQVA-- 295 (311)
T ss_pred CCceEEEEEecCcchhhHhhhccccceEEecccccch--------------hhhhhhhccceEEeccccccccCceee--
Confidence 9999999999999998899999999999999998642 233344568888999999999888888
Q ss_pred cCCCCCCCCCCeEEEeec
Q 010997 450 SDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~ 467 (496)
+.|+|..++||+.
T Consensus 296 -----s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 -----STGWDELLYVWNP 308 (311)
T ss_pred -----ecccccceeeecc
Confidence 5566799999986
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.1e-37 Score=294.31 Aligned_cols=251 Identities=22% Similarity=0.439 Sum_probs=218.3
Q ss_pred cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
.......+|.|+|..++|+| +.++|++++.|++|++|.+.+. .....++||.. +|+.+.|+|.|-|
T Consensus 442 ~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~------------s~~V~y~GH~~-PVwdV~F~P~GyY 507 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTW------------SCLVIYKGHLA-PVWDVQFAPRGYY 507 (707)
T ss_pred ceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccc------------eeEEEecCCCc-ceeeEEecCCceE
Confidence 34455899999999999999 8889999999999999999998 67788999998 8999999999999
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|||||.|++.++|.... ..|++.+.+|...|.|+.|||+.
T Consensus 508 Fatas~D~tArLWs~d~----------------------------------------~~PlRifaghlsDV~cv~FHPNs 547 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDH----------------------------------------NKPLRIFAGHLSDVDCVSFHPNS 547 (707)
T ss_pred EEecCCCceeeeeeccc----------------------------------------CCchhhhcccccccceEEECCcc
Confidence 99999999999999863 34568899999999999999998
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
+++++||.|.+|++||+.++. .++.+.+|.++|.+++|+| +|.+||+|+.||.|.+||+.+ +.++..+.+
T Consensus 548 -~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~ 617 (707)
T KOG0263|consen 548 -NYVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLAN------GSLVKQLKG 617 (707)
T ss_pred -cccccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCC------Ccchhhhhc
Confidence 899999999999999999998 6888899999999999999 999999999999999999999 899999999
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCC---------CCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP---------RTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
|++.|.+|.|+.+|. +||+|+.|..|++||+........... .+......++..+..-..+|..+.|..-
T Consensus 618 Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftrr 696 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRR 696 (707)
T ss_pred ccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEecc
Confidence 999999999999998 789999999999999987544411111 1112333466677777779999999874
Q ss_pred CCcEEE
Q 010997 442 DPWTVV 447 (496)
Q Consensus 442 ~~~l~~ 447 (496)
+ .+++
T Consensus 697 N-l~L~ 701 (707)
T KOG0263|consen 697 N-LLLA 701 (707)
T ss_pred c-eeEE
Confidence 3 4443
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-36 Score=254.12 Aligned_cols=278 Identities=18% Similarity=0.288 Sum_probs=218.3
Q ss_pred CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~ 173 (496)
+.+.+..+.+|++..- +.+- -.....+.+|.-.|+.+..++ ++++.++++.|+++++||+.++
T Consensus 33 sasrDk~ii~W~L~~d-------------d~~~---G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g 95 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSD-------------DIKY---GVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATG 95 (315)
T ss_pred EcccceEEEEEEeccC-------------cccc---CceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCC
Confidence 3457777888876431 0000 112345568999999999999 9999999999999999999998
Q ss_pred CCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCC
Q 010997 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 253 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (496)
++...|.||.. .|.+++|++|++.|+||++|++|++|++-....
T Consensus 96 ------------~~t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck----------------------- 139 (315)
T KOG0279|consen 96 ------------ESTRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK----------------------- 139 (315)
T ss_pred ------------cEEEEEEecCC-ceEEEEecCCCceeecCCCcceeeeeeecccEE-----------------------
Confidence 67788999998 699999999999999999999999999864321
Q ss_pred CCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEE
Q 010997 254 KPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330 (496)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~ 330 (496)
.++. .+.+.|+|+.|+|.. ..+|++++.|++|++||+++.+ ....+.+|...++.++
T Consensus 140 ------------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--l~~~~~gh~~~v~t~~ 199 (315)
T KOG0279|consen 140 ------------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--LRTTFIGHSGYVNTVT 199 (315)
T ss_pred ------------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc--hhhccccccccEEEEE
Confidence 2222 237899999999984 3689999999999999999887 6777889999999999
Q ss_pred ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 410 (496)
Q Consensus 331 ~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~ 410 (496)
++| +|.+.++|+.||.+.+||++. ++.+..+. |...|.+++|+|+... | ++..+..|+|||+.... ...
T Consensus 200 vSp-DGslcasGgkdg~~~LwdL~~------~k~lysl~-a~~~v~sl~fspnryw-L-~~at~~sIkIwdl~~~~-~v~ 268 (315)
T KOG0279|consen 200 VSP-DGSLCASGGKDGEAMLWDLNE------GKNLYSLE-AFDIVNSLCFSPNRYW-L-CAATATSIKIWDLESKA-VVE 268 (315)
T ss_pred ECC-CCCEEecCCCCceEEEEEccC------CceeEecc-CCCeEeeEEecCCcee-E-eeccCCceEEEeccchh-hhh
Confidence 999 999999999999999999999 77877776 7899999999999764 4 34446679999998842 221
Q ss_pred CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
....+...+ ....-.....+++|+++|..|+ +|-.||.|++|.+.
T Consensus 269 ~l~~d~~g~-----s~~~~~~~clslaws~dG~tLf--------~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGP-----SSKAGDPICLSLAWSADGQTLF--------AGYTDNVIRVWQVA 313 (315)
T ss_pred hcccccccc-----ccccCCcEEEEEEEcCCCcEEE--------eeecCCcEEEEEee
Confidence 111110011 1111223456899999999988 66778999999986
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.3e-37 Score=290.62 Aligned_cols=275 Identities=25% Similarity=0.475 Sum_probs=241.2
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
++.|..++|..++|.-.+.++||.+++.+.+++|++.+. .+ ..+.||++ .|.++....+|-+|+||
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~------------~c-~ii~GH~e-~vlSL~~~~~g~llat~ 383 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS------------YC-QIIPGHTE-AVLSLDVWSSGDLLATG 383 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC------------ce-EEEeCchh-heeeeeecccCcEEEEe
Confidence 456788999999998778899999999999999988776 22 27899998 78999966677899999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.|+++++|.+++... ...++....+|...|.+++++..+..+|
T Consensus 384 sKD~svilWr~~~~~~------------------------------------~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCS------------------------------------KSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred cCCceEEEEEecCCcc------------------------------------hhhhhhhhcccccccceeeecccCccEE
Confidence 9999999999854321 2223456789999999999999888999
Q ss_pred EEEcCCCeEEEEEccCCC---ccce----eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 295 CSVGDDSCLILWDARVGT---SPVI----KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~---~~~~----~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
+++|.|+++++|++...+ .+.. .....|...|+|++.+| +..++||||.|.+.+||++.+ ...+.+
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~------~~l~~v 500 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ------LRLLGV 500 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC------ceEEEE
Confidence 999999999999998732 1122 24468999999999999 999999999999999999997 789999
Q ss_pred eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
+.+|+..|.+|.|+|..+ ++||+|.|++|+||.+.+. .++.++.||...|..+.|-.++..++
T Consensus 501 LsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f---------------SClkT~eGH~~aVlra~F~~~~~qli- 563 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF---------------SCLKTFEGHTSAVLRASFIRNGKQLI- 563 (775)
T ss_pred eeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc---------------eeeeeecCccceeEeeeeeeCCcEEE-
Confidence 999999999999999988 7899999999999999986 78889999999999999999999888
Q ss_pred EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|+|.||.|+||++. +.+++.++++|.+.|++++.+|
T Consensus 564 -------S~~adGliKlWnik------t~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 564 -------SAGADGLIKLWNIK------TNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred -------eccCCCcEEEEecc------chhhhhhhhhccceeEEEeecC
Confidence 78888999999999 8999999999999999998775
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=275.61 Aligned_cols=247 Identities=22% Similarity=0.394 Sum_probs=215.1
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
..+|..+|.++.|++ ++..+++|..+|.|++|+..-. .+..+.+|+...|.+++|+|+...|++|+
T Consensus 134 lQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-------------nVk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred hhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh-------------hhHHhhHhhhhhhheeccCCCCceeEEec
Confidence 458999999999999 9999999999999999997654 34566777766899999999999999999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.||+|+|||...... ...+.+|.-.|.+++|+|.. .+++
T Consensus 200 dDg~ikiWdf~~~ke----------------------------------------e~vL~GHgwdVksvdWHP~k-gLia 238 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKE----------------------------------------ERVLRGHGWDVKSVDWHPTK-GLIA 238 (464)
T ss_pred CCCeEEEEeccCCch----------------------------------------hheeccCCCCcceeccCCcc-ceeE
Confidence 999999999874322 25678999999999999998 6999
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i 375 (496)
++|.|..|++||.+++. ++.++..|...|..+.|+| ++++|+++|.|..++++|+|+ -+.+.++++|+..|
T Consensus 239 sgskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~------mkEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRT------MKELFTYRGHKKDV 309 (464)
T ss_pred EccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhH------hHHHHHhhcchhhh
Confidence 99999999999999999 7778889999999999999 889999999999999999997 46788999999999
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 455 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s 455 (496)
+++.|+|-...||++|+.||.|..|.+... + .+...-.+|...|++++|+|-| .+++ +
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~-------------p~~~i~~AHd~~iwsl~~hPlG-hil~-------t 367 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLE-E-------------PLGEIPPAHDGEIWSLAYHPLG-HILA-------T 367 (464)
T ss_pred eeeccccccccceeeccCCCceEEEecccc-c-------------cccCCCcccccceeeeeccccc-eeEe-------e
Confidence 999999998889999999999999999742 1 1122235799999999999966 5666 5
Q ss_pred CCCCCeEEEeecC
Q 010997 456 TGGGGTLQIWRMS 468 (496)
Q Consensus 456 gg~Dg~i~iw~~~ 468 (496)
|+.|.++++|.-.
T Consensus 368 gsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 368 GSNDRTVRFWTRN 380 (464)
T ss_pred cCCCcceeeeccC
Confidence 5556999999865
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=247.72 Aligned_cols=282 Identities=23% Similarity=0.388 Sum_probs=231.5
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ecCCCCcceeeeecCCCCc
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~h~~~~v~~l~~~p~~~~ 210 (496)
.+..+.+|++.|..++|+|..|.+||+|+.|..|+||+..... ...+...+ .+|+. .|..++|+|.|++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---------s~~ck~vld~~hkr-sVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---------SWTCKTVLDDGHKR-SVRSVAWSPHGRY 75 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---------cEEEEEeccccchh-eeeeeeecCCCcE
Confidence 4556779999999999999548899999999999999998531 11222233 46776 7999999999999
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|++||.|.++.||.-..+ ..+.+.++.+|...|.+++|+++|
T Consensus 76 La~aSFD~t~~Iw~k~~~--------------------------------------efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDG--------------------------------------EFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred EEEeeccceEEEeecCCC--------------------------------------ceeEEeeeeccccceeEEEEcCCC
Confidence 999999999999976532 344568899999999999999999
Q ss_pred CceEEEEcCCCeEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 291 AQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
++||+|+.|+.|-||.+.... ..+...+..|...|..+.|+| ...+|++++.|.+|++|+-.... ...++.++.
T Consensus 118 -~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dd---dW~c~~tl~ 192 (312)
T KOG0645|consen 118 -NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDD---DWECVQTLD 192 (312)
T ss_pred -CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCC---CeeEEEEec
Confidence 899999999999999987543 346677889999999999999 89999999999999999877311 167899999
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
+|...|.+++|+|.|.. |++++.|++|+||-+... + ..-|...++.++|. + .+||
T Consensus 193 g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~----------------~---~~~~sr~~Y~v~W~-~--~~Ia-- 247 (312)
T KOG0645|consen 193 GHENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTD----------------L---SGMHSRALYDVPWD-N--GVIA-- 247 (312)
T ss_pred CccceEEEEEecCCCce-EEEecCCcceEeeeeccC----------------c---chhcccceEeeeec-c--cceE--
Confidence 99999999999999986 579999999999997642 0 13467889999998 3 3566
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHH-HHHhccceEEEeccCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP 496 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~-~l~~h~~~v~~~~~sP 496 (496)
|+|.|+.|++|.-....-.+.-+++. .-..|...|++|+|.|
T Consensus 248 -----S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 248 -----SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP 290 (312)
T ss_pred -----eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence 56667999999988655555555555 4567888999999987
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-36 Score=250.57 Aligned_cols=269 Identities=20% Similarity=0.337 Sum_probs=225.3
Q ss_pred eEEEecCCCCcEEEEEeC-------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEec
Q 010997 144 NRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG 215 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~ 215 (496)
.++.|+|.-.+.||.+.. .|.+.|-++...+. ......+.- ...++.++|+++ .+.+++++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g---------i~e~~s~d~--~D~LfdV~Wse~~e~~~~~a~ 80 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG---------IQECQSYDT--EDGLFDVAWSENHENQVIAAS 80 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC---------eEEEEeeec--ccceeEeeecCCCcceEEEEe
Confidence 478899966666665533 67899999864311 111222222 235899999997 55888999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.||++++||+. ....|+..++.|..+|.++.|++.....++
T Consensus 81 GDGSLrl~d~~---------------------------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 81 GDGSLRLFDLT---------------------------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred cCceEEEeccC---------------------------------------CCCcchhHHHhhhhheEEeccccccceeEE
Confidence 99999999954 233467889999999999999998778899
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i 375 (496)
+++.|++|++||...+. .+.++.+|...|...+|+|..+++++++|.|+.+++||++.+ ++ ...+..|...|
T Consensus 122 tsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----gk-~~~i~ah~~Ei 193 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----GK-FMSIEAHNSEI 193 (311)
T ss_pred eeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----Cc-eeEEEecccee
Confidence 99999999999998777 677899999999999999999999999999999999999984 23 34489999999
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 455 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s 455 (496)
.++.|+....++++||+.|+.|++||++... ..++.+.||.-.|..+.|+|....++||+|.|
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD--- 256 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------------TPLFELNGHGLAVRKVKFSPHHASLLASASYD--- 256 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhcc--------------ccceeecCCceEEEEEecCcchhhHhhhcccc---
Confidence 9999999999999999999999999999852 45778899999999999999999999987776
Q ss_pred CCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 456 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 456 gg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
-+++|||+.. ....+.+.+.|+.-|..++||+
T Consensus 257 ----mT~riw~~~~-----~ds~~e~~~~HtEFv~g~Dws~ 288 (311)
T KOG0277|consen 257 ----MTVRIWDPER-----QDSAIETVDHHTEFVCGLDWSL 288 (311)
T ss_pred ----ceEEeccccc-----chhhhhhhhccceEEecccccc
Confidence 9999999984 4678889999999999999986
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-36 Score=270.87 Aligned_cols=282 Identities=18% Similarity=0.350 Sum_probs=228.4
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec---CCCCcceeeeecCCCC
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG---HQDNAEFALAMCPTEP 209 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~---h~~~~v~~l~~~p~~~ 209 (496)
..+.+.|..+|.+.+|.|-...++|+|+.|-..++|++.......... ...+......+ .....|++|+|+.+|.
T Consensus 171 ~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q--~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 171 KAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ--LVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred ceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh--hhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 345667999999999999666699999999999999998531111100 00000001111 1223599999999999
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
.||+|+.||.+++|+..... +.++..|.++|.++.|+..
T Consensus 249 ~LatG~~~G~~riw~~~G~l-----------------------------------------~~tl~~HkgPI~slKWnk~ 287 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNL-----------------------------------------ISTLGQHKGPIFSLKWNKK 287 (524)
T ss_pred eEEEeecCcEEEEEecCchh-----------------------------------------hhhhhccCCceEEEEEcCC
Confidence 99999999999999986432 3667789999999999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCc---------------------------------------cceeeeccCCCCeEEEE
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTS---------------------------------------PVIKVEKAHDADLHCVD 330 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~---------------------------------------~~~~~~~~~~~~v~~i~ 330 (496)
| ++|++++.|+++.+||..++.. ....++.+|...|+++.
T Consensus 288 G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 288 G-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred C-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 8 8999999999999999865431 12345568999999999
Q ss_pred ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC--------CEEEEEeCCCcEEEEEC
Q 010997 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS--------SVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 331 ~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~--------~llas~~~dg~i~iwd~ 402 (496)
|+| .+.+|++++.|++++||.+.. ....+.+.+|...|..+.|+|.|. .++++++.|++|++||+
T Consensus 367 ~n~-tg~LLaS~SdD~TlkiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 367 WNP-TGSLLASCSDDGTLKIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ECC-CCceEEEecCCCeeEeeecCC------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 999 999999999999999999888 788999999999999999999763 36789999999999999
Q ss_pred CCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 482 (496)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l 482 (496)
..+ .+++.+..|..+|++++|+|++.+++ +|+.||.|.||+.. .++.++.+
T Consensus 440 ~~g---------------v~i~~f~kH~~pVysvafS~~g~ylA--------sGs~dg~V~iws~~------~~~l~~s~ 490 (524)
T KOG0273|consen 440 ESG---------------VPIHTLMKHQEPVYSVAFSPNGRYLA--------SGSLDGCVHIWSTK------TGKLVKSY 490 (524)
T ss_pred cCC---------------ceeEeeccCCCceEEEEecCCCcEEE--------ecCCCCeeEecccc------chheeEee
Confidence 885 67888999999999999999999876 78888999999999 77877777
Q ss_pred HhccceEEEeccC
Q 010997 483 EKFKAHVISCTSK 495 (496)
Q Consensus 483 ~~h~~~v~~~~~s 495 (496)
.+ .+.|..|+|+
T Consensus 491 ~~-~~~Ifel~Wn 502 (524)
T KOG0273|consen 491 QG-TGGIFELCWN 502 (524)
T ss_pred cC-CCeEEEEEEc
Confidence 64 3558888875
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=244.24 Aligned_cols=291 Identities=18% Similarity=0.280 Sum_probs=230.2
Q ss_pred eEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEe
Q 010997 69 SCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRE 148 (496)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 148 (496)
.+.|.|.. -+ ++ ++++.++.++||+..-.. .-..+.+---+|+..|++++|
T Consensus 19 ~~awhp~~--------g~-il---Ascg~Dk~vriw~~~~~~-----------------s~~ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 19 SVAWHPGK--------GV-IL---ASCGTDKAVRIWSTSSGD-----------------SWTCKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred EEEeccCC--------ce-EE---EeecCCceEEEEecCCCC-----------------cEEEEEeccccchheeeeeee
Confidence 78888863 11 22 456788999999864211 111222233479999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997 149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (496)
Q Consensus 149 ~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~ 228 (496)
+| .+++||+|+.|.++.||.-..+ ..+++.+++||.. .|.|++|+++|++||+|++|++|-||.+...
T Consensus 70 sp-~g~~La~aSFD~t~~Iw~k~~~----------efecv~~lEGHEn-EVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 70 SP-HGRYLASASFDATVVIWKKEDG----------EFECVATLEGHEN-EVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred cC-CCcEEEEeeccceEEEeecCCC----------ceeEEeeeecccc-ceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 99 8899999999999999987755 3467889999998 7999999999999999999999999998732
Q ss_pred cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEc
Q 010997 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 308 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 308 (496)
...+....+.+|...|..+.|||.. .+|++++.|.+|++|+-
T Consensus 138 -------------------------------------dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 138 -------------------------------------DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRD 179 (312)
T ss_pred -------------------------------------CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEee
Confidence 2344557899999999999999987 79999999999999987
Q ss_pred c-CCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCE
Q 010997 309 R-VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 387 (496)
Q Consensus 309 ~-~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l 387 (496)
. .....+..++.+|...|.+++|++ .+..|++++.|++|+||-... .- -..|..+++.+.|. ++ +
T Consensus 180 ~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~------~~----~~~~sr~~Y~v~W~-~~--~ 245 (312)
T KOG0645|consen 180 EDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYT------DL----SGMHSRALYDVPWD-NG--V 245 (312)
T ss_pred cCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeecc------Cc----chhcccceEeeeec-cc--c
Confidence 7 555567888899999999999999 899999999999999998664 11 12377899999998 54 6
Q ss_pred EEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe-eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997 388 FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG-LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 466 (496)
Q Consensus 388 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~ 466 (496)
|||++.|+.|++|.-...... .... +......|...|++++|+|....+++|+++ ||.|++|.
T Consensus 246 IaS~ggD~~i~lf~~s~~~d~---------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D-------DG~v~~W~ 309 (312)
T KOG0645|consen 246 IASGGGDDAIRLFKESDSPDE---------PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD-------DGIVNFWE 309 (312)
T ss_pred eEeccCCCEEEEEEecCCCCC---------chHHHHHhhhcccccccceEEEcCCCCCceeecCC-------CceEEEEE
Confidence 899999999999987642110 0111 122345688899999999976777776555 49999998
Q ss_pred cC
Q 010997 467 MS 468 (496)
Q Consensus 467 ~~ 468 (496)
+.
T Consensus 310 l~ 311 (312)
T KOG0645|consen 310 LE 311 (312)
T ss_pred ec
Confidence 75
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.3e-36 Score=260.26 Aligned_cols=244 Identities=26% Similarity=0.462 Sum_probs=218.5
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
+.+|.+.|.|+++.| ....|+||+.|++|+|||+.++ +...++.||.. .|..+++++...||++++
T Consensus 147 i~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg------------~LkltltGhi~-~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATG------------QLKLTLTGHIE-TVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred hhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccC------------eEEEeecchhh-eeeeeeecccCceEEEec
Confidence 458999999999999 6789999999999999999999 77789999998 799999999999999999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.|+.|+.||++..+. ++.+.+|-..|.+++.+|.- ..|+
T Consensus 213 edk~VKCwDLe~nkv----------------------------------------IR~YhGHlS~V~~L~lhPTl-dvl~ 251 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKV----------------------------------------IRHYHGHLSGVYCLDLHPTL-DVLV 251 (460)
T ss_pred CCCeeEEEechhhhh----------------------------------------HHHhccccceeEEEeccccc-eeEE
Confidence 999999999986543 36788999999999999998 7999
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i 375 (496)
+|+.|.++++||+|+.. .+..+.+|..+|..+.+.| ....+++|+.|++|++||++. ++...++..|...|
T Consensus 252 t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~a------gkt~~tlt~hkksv 322 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRA------GKTMITLTHHKKSV 322 (460)
T ss_pred ecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeecc------CceeEeeeccccee
Confidence 99999999999999988 6788899999999999999 667789999999999999999 88899999999999
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 455 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s 455 (496)
.+++.+|... +||+++.| .|+-|++..+ ..+..+.+|..-|+.++.+.++ .++ +
T Consensus 323 ral~lhP~e~-~fASas~d-nik~w~~p~g---------------~f~~nlsgh~~iintl~~nsD~-v~~--------~ 376 (460)
T KOG0285|consen 323 RALCLHPKEN-LFASASPD-NIKQWKLPEG---------------EFLQNLSGHNAIINTLSVNSDG-VLV--------S 376 (460)
T ss_pred eEEecCCchh-hhhccCCc-cceeccCCcc---------------chhhccccccceeeeeeeccCc-eEE--------E
Confidence 9999999976 68899977 5999999885 4455588999999999998754 444 5
Q ss_pred CCCCCeEEEeecCC
Q 010997 456 TGGGGTLQIWRMSD 469 (496)
Q Consensus 456 gg~Dg~i~iw~~~~ 469 (496)
||..|.+.+||...
T Consensus 377 G~dng~~~fwdwks 390 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKS 390 (460)
T ss_pred cCCceEEEEEecCc
Confidence 66679999999973
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=244.00 Aligned_cols=269 Identities=23% Similarity=0.343 Sum_probs=230.1
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
+...+-.|+++|+.++|.- ++++.++++.|.+|++|+.-.+ .++.++.+|.. .|..++.+.|+..|
T Consensus 9 r~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg------------~liktYsghG~-EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRG------------ALIKTYSGHGH-EVLDAALSSDNSKF 74 (307)
T ss_pred hceeecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccc------------ceeeeecCCCc-eeeecccccccccc
Confidence 4445568999999999999 9999999999999999999888 77889999987 68999999999999
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
++|+.|+.|.+||+++++. .+.+.+|.+.|+.++|+.+.
T Consensus 75 ~s~GgDk~v~vwDV~TGkv----------------------------------------~Rr~rgH~aqVNtV~fNees- 113 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKV----------------------------------------DRRFRGHLAQVNTVRFNEES- 113 (307)
T ss_pred ccCCCCceEEEEEcccCee----------------------------------------eeecccccceeeEEEecCcc-
Confidence 9999999999999987654 37889999999999999887
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
..+++|+.|.++++||.|+.....++.+......|.+|..+ +..+++|+.||+++.||+|. +.....+ .
T Consensus 114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~------G~l~sDy--~ 182 (307)
T KOG0316|consen 114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK------GTLSSDY--F 182 (307)
T ss_pred eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec------ceeehhh--c
Confidence 79999999999999999998877788888888999999985 57899999999999999998 5554444 4
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc--ceEEecCCCCcEEEEe
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSV 449 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~~~~~p~~~~l~~s~ 449 (496)
..+|++++|++++...| .++.|+++++-|-.++ +++....||...= .+++++..... ++
T Consensus 183 g~pit~vs~s~d~nc~L-a~~l~stlrLlDk~tG---------------klL~sYkGhkn~eykldc~l~qsdth-V~-- 243 (307)
T KOG0316|consen 183 GHPITSVSFSKDGNCSL-ASSLDSTLRLLDKETG---------------KLLKSYKGHKNMEYKLDCCLNQSDTH-VF-- 243 (307)
T ss_pred CCcceeEEecCCCCEEE-Eeeccceeeecccchh---------------HHHHHhcccccceeeeeeeeccccee-EE--
Confidence 56899999999999766 7778999999998885 5666778887744 35666665554 44
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccce-EEEeccCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH-VISCTSKP 496 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~-v~~~~~sP 496 (496)
+|+.||.|.+||+- .+..+..+..+... |.+++++|
T Consensus 244 -----sgSEDG~Vy~wdLv------d~~~~sk~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 244 -----SGSEDGKVYFWDLV------DETQISKLSVVSTVIVTDLSCHP 280 (307)
T ss_pred -----eccCCceEEEEEec------cceeeeeeccCCceeEEeeeccc
Confidence 55556999999999 57778888888887 89999998
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-34 Score=264.05 Aligned_cols=318 Identities=19% Similarity=0.221 Sum_probs=239.3
Q ss_pred cccc-eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe---cCCCCcceeeee
Q 010997 129 PFVK-KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT---GHQDNAEFALAM 204 (496)
Q Consensus 129 ~~~~-~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~---~h~~~~v~~l~~ 204 (496)
|+++ ......|..-|+|++|+| |+.++||++.||.|.+||-.++ +.+..+. +|.+ .|++|+|
T Consensus 178 PPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg------------e~vg~l~~~~aHkG-sIfalsW 243 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG------------EKVGELEDSDAHKG-SIFALSW 243 (603)
T ss_pred CCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc------------cEEEEecCCCCccc-cEEEEEE
Confidence 3444 344557999999999999 8999999999999999999888 4445555 8988 6999999
Q ss_pred cCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCC----CCCCCCCCCCCCCCcCCeeeeecCCCc
Q 010997 205 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP----KPGDGNDKAADGPSVGPRGIYNGHEDT 280 (496)
Q Consensus 205 ~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (496)
+||+..|+|++.|.+++|||+.+..+......... .......++.... ....+.+.+.+.....+...+.+|...
T Consensus 244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred CCCCceEEEecCCceEEEEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 99999999999999999999998755433322111 0000111111110 123456666677777788999999999
Q ss_pred eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccce--------------------------------------------
Q 010997 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI-------------------------------------------- 316 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------------------------------------- 316 (496)
|+++..+|++ .+|++|+.||.|.-||..++....+
T Consensus 323 ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~ 401 (603)
T KOG0318|consen 323 ITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV 401 (603)
T ss_pred eeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence 9999999999 8999999999999999876532100
Q ss_pred ---------------------------eeeccC--------CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 317 ---------------------------KVEKAH--------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 317 ---------------------------~~~~~~--------~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
..++.+ .-...+++++| ++..+|.|+.||.|+||.+....
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~---- 476 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDE---- 476 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCc----
Confidence 000000 11245788899 99999999999999999998632
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
.........|.++|+++++||++.+ ||+|...+.|.+||+..... ......-|...|.+++|+|+
T Consensus 477 l~ee~~~~~h~a~iT~vaySpd~~y-la~~Da~rkvv~yd~~s~~~--------------~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 477 LKEEAKLLEHRAAITDVAYSPDGAY-LAAGDASRKVVLYDVASREV--------------KTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred ccceeeeecccCCceEEEECCCCcE-EEEeccCCcEEEEEcccCce--------------ecceeeeeeeeEEEEEeCCC
Confidence 2334456679999999999999995 68999999999999988411 12223448999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
.. ++| ||+.|..|.||++.+ ..+.+.-..+|...|+.|+|-
T Consensus 542 n~-~vA-------TGSlDt~Viiysv~k-----P~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 542 NK-LVA-------TGSLDTNVIIYSVKK-----PAKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred ce-EEE-------eccccceEEEEEccC-----hhhheEeccccccCceeEEEe
Confidence 76 455 777779999999995 344477778899999999883
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.3e-35 Score=286.87 Aligned_cols=267 Identities=26% Similarity=0.450 Sum_probs=227.2
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
|...|.++.|+| +++.+++++.++.+++|+...... .....+.+|.. .|..++|+|++.++++|+.|+
T Consensus 158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~-~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTR-GVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc----------hhhcccccccc-ceeeeEECCCCcEEEEecCCc
Confidence 378999999999 888999999999999999966521 24456688988 699999999999999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
+|+|||+... ...++++.+|...|++++|+|++ +++++|+
T Consensus 226 tiriwd~~~~---------------------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs 265 (456)
T KOG0266|consen 226 TLRIWDLKDD---------------------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGS 265 (456)
T ss_pred eEEEeeccCC---------------------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEec
Confidence 9999999422 22347889999999999999999 8999999
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC--CceEeccCCCC--
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS--PINKFEGHSAA-- 374 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~~~~~~~h~~~-- 374 (496)
.|++|+|||+++++ +...+.+|...|++++|++ ++++|++++.|+.|++||+.+ +. ++..+.++...
T Consensus 266 ~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~ 336 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAP 336 (456)
T ss_pred CCCcEEEEeccCCe--EEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCc
Confidence 99999999999977 7888899999999999999 999999999999999999998 55 46677776665
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC---cceEEecCCCCcEEEEecC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK---VVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~~~~~p~~~~l~~s~s~ 451 (496)
+++++|+|++.++ ++++.|+.+++||+... .......+|... +.+...++.+.+++
T Consensus 337 ~~~~~fsp~~~~l-l~~~~d~~~~~w~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----- 395 (456)
T KOG0266|consen 337 VTSVQFSPNGKYL-LSASLDRTLKLWDLRSG---------------KSVGTYTGHSNLVRCIFSPTLSTGGKLIY----- 395 (456)
T ss_pred eeEEEECCCCcEE-EEecCCCeEEEEEccCC---------------cceeeecccCCcceeEecccccCCCCeEE-----
Confidence 9999999999975 58989999999999975 344455666654 33444466666655
Q ss_pred CCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc-cceEEEeccCC
Q 010997 452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCTSKP 496 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h-~~~v~~~~~sP 496 (496)
+|+.|+.|++|++. ++..+..+.+| ...|..++++|
T Consensus 396 ---sg~~d~~v~~~~~~------s~~~~~~l~~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 396 ---SGSEDGSVYVWDSS------SGGILQRLEGHSKAAVSDLSSHP 432 (456)
T ss_pred ---EEeCCceEEEEeCC------ccchhhhhcCCCCCceeccccCC
Confidence 66777999999999 78999999999 88999999887
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=257.47 Aligned_cols=313 Identities=20% Similarity=0.406 Sum_probs=241.4
Q ss_pred cccCChhHhHhhhhCcCCCCcceEeccCCcccCCCcceEEEEEEe-----ecCCCCCCeEEEEEEeccCcchhhhccccc
Q 010997 47 WKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE-----QTDGSVPNTLVIANCEVVKPRVAAAEHISQ 121 (496)
Q Consensus 47 w~~~~~~ly~~~~~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~ 121 (496)
.+.+=|++|+.+.+.+-.|-+-..-- ..+...+.. ..-+|.-. .-+|..+|++.||+...
T Consensus 162 ~~~l~pki~~di~~idsNWr~Gr~~~-~rinc~Se~-skgVYClQYDD~kiVSGlrDnTikiWD~n~------------- 226 (499)
T KOG0281|consen 162 YRLLYPKIIQDIETIESNWRCGRHLL-QRINCRSEN-SKGVYCLQYDDEKIVSGLRDNTIKIWDKNS------------- 226 (499)
T ss_pred hhhhhHHHHHHHhhhhcchhccceee-eeecCCccc-CCceEEEEecchhhhcccccCceEEecccc-------------
Confidence 34556888888888888885422210 011111111 11222211 24678888999887532
Q ss_pred cCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCccee
Q 010997 122 FNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA 201 (496)
Q Consensus 122 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~ 201 (496)
......+.||+|.|.|+.| +.++|++|+.|.+|+|||++++ +++.++-+|.+ +|..
T Consensus 227 --------~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tg------------e~l~tlihHce-aVLh 282 (499)
T KOG0281|consen 227 --------LECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTG------------EPLNTLIHHCE-AVLH 282 (499)
T ss_pred --------HHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCC------------chhhHHhhhcc-eeEE
Confidence 1123356799999999999 5579999999999999999999 78888999998 6899
Q ss_pred eeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce
Q 010997 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 281 (496)
Q Consensus 202 l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 281 (496)
+.|+ +.+++|++.|.+|.+||+.... .....+.+.+|...|
T Consensus 283 lrf~--ng~mvtcSkDrsiaVWdm~sps-------------------------------------~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 283 LRFS--NGYMVTCSKDRSIAVWDMASPT-------------------------------------DITLRRVLVGHRAAV 323 (499)
T ss_pred EEEe--CCEEEEecCCceeEEEeccCch-------------------------------------HHHHHHHHhhhhhhe
Confidence 9995 5699999999999999997532 122336788999999
Q ss_pred eEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 282 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
+.+.|+. .++++++.|.+|++|++.+.. .+.++.+|...|-|+.+ .+.++++|+.|.+|++||+..
T Consensus 324 NvVdfd~---kyIVsASgDRTikvW~~st~e--fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~------ 389 (499)
T KOG0281|consen 324 NVVDFDD---KYIVSASGDRTIKVWSTSTCE--FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC------ 389 (499)
T ss_pred eeecccc---ceEEEecCCceEEEEecccee--eehhhhcccccceehhc---cCeEEEecCCCceEEEEeccc------
Confidence 9999963 689999999999999999988 78889999999999998 579999999999999999999
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
+.+++.+++|..-|.++.|... . +++|+.||.|+|||+...-.... .....++..+..|.+.|..+.|..
T Consensus 390 G~cLRvLeGHEeLvRciRFd~k--r-IVSGaYDGkikvWdl~aaldpra------~~~~~Cl~~lv~hsgRVFrLQFD~- 459 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDNK--R-IVSGAYDGKIKVWDLQAALDPRA------PASTLCLRTLVEHSGRVFRLQFDE- 459 (499)
T ss_pred cHHHHHHhchHHhhhheeecCc--e-eeeccccceEEEEecccccCCcc------cccchHHHhhhhccceeEEEeecc-
Confidence 9999999999999999999643 3 46999999999999987422111 011235566778999999999963
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
+-+++++.| .+|-|||+.+.
T Consensus 460 --fqIvsssHd-------dtILiWdFl~~ 479 (499)
T KOG0281|consen 460 --FQIISSSHD-------DTILIWDFLNG 479 (499)
T ss_pred --eEEEeccCC-------CeEEEEEcCCC
Confidence 456655554 89999999753
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=268.44 Aligned_cols=375 Identities=17% Similarity=0.264 Sum_probs=273.5
Q ss_pred hhhCcCCCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEe
Q 010997 58 LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTI 137 (496)
Q Consensus 58 ~~~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (496)
++++.+.-|.-+++|.|. -+++..+ ..|.+.||...- . + .+.-.|+.......
T Consensus 90 lh~f~fk~~v~~i~fSPn---------g~~fav~-----~gn~lqiw~~P~--~----------~-~~~~~pFvl~r~~~ 142 (893)
T KOG0291|consen 90 LHRFNFKRGVGAIKFSPN---------GKFFAVG-----CGNLLQIWHAPG--E----------I-KNEFNPFVLHRTYL 142 (893)
T ss_pred eEEEeecCccceEEECCC---------CcEEEEE-----ecceeEEEecCc--c----------h-hcccCcceEeeeec
Confidence 345566668888888886 2332221 467888887532 1 1 11223455556678
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
+|-..|.++.|+. |.++|++|+.|-+++||.+...++ -....+.||.+ .|.+..|..+...|++.+.|
T Consensus 143 g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~----------~~~~~l~gHkd-~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 143 GHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKN----------LFTYALNGHKD-YVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred CCccceeEEEecc-CCceEEeccccceEEEEEeccccc----------cceEeccCCCc-ceEEEEeccCcceEEEEecC
Confidence 9999999999999 899999999999999999988732 22457899998 67888899998899999999
Q ss_pred CcEEEEecCCccccccC--------------Cccccc-------------cCCCCCcee---------ccCCCCCCCCCC
Q 010997 218 KSVVLWSIQDHITSSAT--------------DPATAK-------------SAGSSGSII---------KQSPKPGDGNDK 261 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~--------------~~~~~~-------------~~~~~~~~~---------~~~~~~~~~~~~ 261 (496)
|.+.+|........... ...... .......+. ........+...
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 99999988722100000 000000 000000000 001123345556
Q ss_pred CCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc-CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997 262 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 340 (496)
Q Consensus 262 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 340 (496)
++..+....++.+.-...+|..+.|+..| ..++.|+ .=|.+.||+.++.. .+...++|...+++++++| +++++|
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSp-Dgq~ia 366 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSP-DGQLIA 366 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc--eeeeccccccceeeEEECC-CCcEEE
Confidence 67777888888888778899999999998 5666665 45899999999887 5667789999999999999 999999
Q ss_pred EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC-----
Q 010997 341 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----- 415 (496)
Q Consensus 341 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~----- 415 (496)
||+.||.|+|||.++ +-++.+|..|++.|+.++|+..+.. +.+++.||+|+.||+.....-.+.....
T Consensus 367 TG~eDgKVKvWn~~S------gfC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfs 439 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQS------GFCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFS 439 (893)
T ss_pred eccCCCcEEEEeccC------ceEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCceeee
Confidence 999999999999999 8999999999999999999999985 5599999999999997643321111000
Q ss_pred ------------------------CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCC
Q 010997 416 ------------------------TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 471 (496)
Q Consensus 416 ------------------------~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~ 471 (496)
.....+++-.+.||.++|.+++|+|.+..|+ ||++|.+|++|++-.
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La--------S~SWDkTVRiW~if~-- 509 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA--------SGSWDKTVRIWDIFS-- 509 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE--------eccccceEEEEEeec--
Confidence 0013345667889999999999999888555 788889999999973
Q ss_pred cCCchHHHHHHHhccceEEEeccCC
Q 010997 472 YRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 472 ~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
....+.+++ +..-|++++|+|
T Consensus 510 ---s~~~vEtl~-i~sdvl~vsfrP 530 (893)
T KOG0291|consen 510 ---SSGTVETLE-IRSDVLAVSFRP 530 (893)
T ss_pred ---cCceeeeEe-eccceeEEEEcC
Confidence 222344444 566788999987
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.2e-35 Score=266.02 Aligned_cols=279 Identities=18% Similarity=0.295 Sum_probs=235.7
Q ss_pred cccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997 129 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (496)
Q Consensus 129 ~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~ 208 (496)
|...++..-+|+..|+++.|+|-.+.+|++++.|+.|+||++-... +++.++.||.. +|..++|+++|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----------~~lrtf~gH~k-~Vrd~~~s~~g 270 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----------RCLRTFKGHRK-PVRDASFNNCG 270 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----------ceehhhhcchh-hhhhhhccccC
Confidence 4556777889999999999999889999999999999999998742 77889999998 79999999999
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
..|+|+|.|+.|++||++++++.... .....++|+.|+|
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f-----------------------------------------~~~~~~~cvkf~p 309 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRF-----------------------------------------HLDKVPTCVKFHP 309 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEE-----------------------------------------ecCCCceeeecCC
Confidence 99999999999999999988764221 1234678999999
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
++.++|++|+.|+.|+.||+|+++ ++..+..|-+.|+.+.|-+ ++..+++.+.|++++||+.+. ..++..+
T Consensus 310 d~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~------~v~ik~i 380 (503)
T KOG0282|consen 310 DNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRI------PVPIKNI 380 (503)
T ss_pred CCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCC------Cccchhh
Confidence 998999999999999999999998 7778888999999999999 999999999999999999998 3333322
Q ss_pred -ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC--CcceEEecCCCCcE
Q 010997 369 -EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWT 445 (496)
Q Consensus 369 -~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l 445 (496)
..+.....+|..+|++.+ +++=+.|+.|.+|.+... .+...-..+.||.. --..+.|||+|.+|
T Consensus 381 ~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~------------~r~nkkK~feGh~vaGys~~v~fSpDG~~l 447 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPP------------FRLNKKKRFEGHSVAGYSCQVDFSPDGRTL 447 (503)
T ss_pred cchhhccCcceecCCCCCe-ehhhccCceEEEEecccc------------cccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence 223445668999999995 678888999999997653 12223334567754 34578999999987
Q ss_pred EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+ +|..||.+.+||.. +-.++..+++|.+++..++|||
T Consensus 448 ~--------SGdsdG~v~~wdwk------t~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 448 C--------SGDSDGKVNFWDWK------TTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred E--------eecCCccEEEeech------hhhhhhccccCCcceEEEEecC
Confidence 7 88888999999999 7899999999999999999998
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.4e-35 Score=256.11 Aligned_cols=259 Identities=20% Similarity=0.388 Sum_probs=220.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
....|.|+.| +...+++|..|.+|+|||..+. .+...+.||++ .|.|+.| +.+.|++|+.|.
T Consensus 196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~------------~c~~~L~GHtG-SVLCLqy--d~rviisGSSDs 257 (499)
T KOG0281|consen 196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSL------------ECLKILTGHTG-SVLCLQY--DERVIVSGSSDS 257 (499)
T ss_pred cCCceEEEEe---cchhhhcccccCceEEeccccH------------HHHHhhhcCCC-cEEeeec--cceEEEecCCCc
Confidence 4568999999 5567999999999999999887 67778999999 5889988 567999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
+|++||++++ +++.++.+|...|..+.|+. .++++++
T Consensus 258 TvrvWDv~tg----------------------------------------e~l~tlihHceaVLhlrf~n---g~mvtcS 294 (499)
T KOG0281|consen 258 TVRVWDVNTG----------------------------------------EPLNTLIHHCEAVLHLRFSN---GYMVTCS 294 (499)
T ss_pred eEEEEeccCC----------------------------------------chhhHHhhhcceeEEEEEeC---CEEEEec
Confidence 9999999865 34577889999999999973 5899999
Q ss_pred CCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 299 DDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
.|.++.+||+.+... .+...+.+|...|+.+.|+ ..++++++.|.+|++|++.+ +..++++.+|.-.|.|
T Consensus 295 kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st------~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 295 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTST------CEFVRTLNGHKRGIAC 365 (499)
T ss_pred CCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccc------eeeehhhhccccccee
Confidence 999999999988752 2344567999999999996 46999999999999999999 8999999999999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
+++. ++ ++++|+.|.+|++||+..+ .++..+.||..-|.++.|+. ..++ ||+
T Consensus 366 lQYr--~r-lvVSGSSDntIRlwdi~~G---------------~cLRvLeGHEeLvRciRFd~--krIV--------SGa 417 (499)
T KOG0281|consen 366 LQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVLEGHEELVRCIRFDN--KRIV--------SGA 417 (499)
T ss_pred hhcc--Ce-EEEecCCCceEEEEecccc---------------HHHHHHhchHHhhhheeecC--ceee--------ecc
Confidence 9884 55 6789999999999999986 56777899999999999974 4555 777
Q ss_pred CCCeEEEeecCCCCcC---CchHHHHHHHhccceEEEeccC
Q 010997 458 GGGTLQIWRMSDLIYR---PQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 458 ~Dg~i~iw~~~~~~~~---~~~~~~~~l~~h~~~v~~~~~s 495 (496)
.||+|+|||+...... ...-++..+..|++.|..+.|.
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence 7899999999744221 1234788999999999998873
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=233.40 Aligned_cols=258 Identities=15% Similarity=0.314 Sum_probs=213.0
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
..-+||+++.|-+|++|...++ .+..+++ |.+.-|+.|...|+++.||+++ ...||+||+++.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG------------~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~--- 71 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG------------ICSRTIQ-HPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSN--- 71 (311)
T ss_pred CceEEEeccCcceeeeeehhcC------------eEEEEEe-cCccceeeEEEcCCcchhhhcc-CCeeEEEEccCC---
Confidence 4568999999999999999999 6666665 4455799999999999999888 568999999853
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (496)
...|+..|.+|...|+.+.|..+| ..+++|++||+++|||+|..
T Consensus 72 -----------------------------------np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 72 -----------------------------------NPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL 115 (311)
T ss_pred -----------------------------------CCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc
Confidence 334678999999999999999999 89999999999999999996
Q ss_pred CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEE
Q 010997 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGS 390 (496)
Q Consensus 312 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas 390 (496)
. +.+ ...|.++|+++..+| ++.-|++|..+|.|++||++. ..+.+.+. .-..+|.++...|+|.. ++.
T Consensus 116 ~--~qR-~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~------~~c~~~liPe~~~~i~sl~v~~dgsm-l~a 184 (311)
T KOG0315|consen 116 S--CQR-NYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGE------NSCTHELIPEDDTSIQSLTVMPDGSM-LAA 184 (311)
T ss_pred c--cch-hccCCCCcceEEecC-CcceEEeecCCCcEEEEEccC------CccccccCCCCCcceeeEEEcCCCcE-EEE
Confidence 5 333 346889999999999 899999999999999999998 34444443 23468999999999995 667
Q ss_pred EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 391 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
+..-|..++|++-.. .. ..+.+++..+..|.+.+..+.+||++.+|+ ++|.|.+++||+..+.
T Consensus 185 ~nnkG~cyvW~l~~~-~~--------~s~l~P~~k~~ah~~~il~C~lSPd~k~la--------t~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNH-QT--------ASELEPVHKFQAHNGHILRCLLSPDVKYLA--------TCSSDKTVKIWNTDDF 247 (311)
T ss_pred ecCCccEEEEEccCC-Cc--------cccceEhhheecccceEEEEEECCCCcEEE--------eecCCceEEEEecCCc
Confidence 888999999999762 11 134456667889999999999999888765 4555699999999853
Q ss_pred CcCCchHHHHHHHhccceEEEeccC
Q 010997 471 IYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 471 ~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
-.....+++|+.-+++++||
T Consensus 248 -----~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 248 -----FKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred -----eeeEEEeecCCceEEeeeec
Confidence 24446678999999999997
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=249.58 Aligned_cols=247 Identities=21% Similarity=0.372 Sum_probs=221.5
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+.+|...|..|+|.. .+++||+++.|-.+++||.++. .+++..+.+|.. .|.+++|-|.|.+|+|+
T Consensus 145 ~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~-----------~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~ 211 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTF-----------FRCIKSLIGHEH-GVSSVFFLPLGDHILSC 211 (406)
T ss_pred hhhccccceeEEEEec-CccEEEecCCccchhheeHHHH-----------HHHHHHhcCccc-ceeeEEEEecCCeeeec
Confidence 4568999999999999 8899999999989999999874 156677889987 68999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
++|.+|+.|++.++-+ +.++.+|...|.-++.+.|| .++
T Consensus 212 srD~tik~We~~tg~c----------------------------------------v~t~~~h~ewvr~v~v~~DG-ti~ 250 (406)
T KOG0295|consen 212 SRDNTIKAWECDTGYC----------------------------------------VKTFPGHSEWVRMVRVNQDG-TII 250 (406)
T ss_pred ccccceeEEeccccee----------------------------------------EEeccCchHhEEEEEecCCe-eEE
Confidence 9999999999987644 47788999999999999999 899
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--------------CCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------------DDNLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--------------~~~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
++|+.|.+|++|-+.+++ +...+..|+.+|-|++|-|. .++++++++.|++|++||+.+
T Consensus 251 As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t----- 323 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST----- 323 (406)
T ss_pred EecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-----
Confidence 999999999999999887 55667799999999999763 236999999999999999999
Q ss_pred CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
+.++.++.+|...|..++|+|.|+|| +|+.+|+++++||++.. +++..+..|..-|++++|+.
T Consensus 324 -g~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~~---------------~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 324 -GMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKNL---------------QCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred -CeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEeccc---------------eeeeccCCCcceeEEEecCC
Confidence 89999999999999999999999986 59999999999999985 66777889999999999999
Q ss_pred CCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 441 SDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
+-++++ ||+-|.++++|.-
T Consensus 387 ~~p~Vv--------TGsVdqt~KvwEc 405 (406)
T KOG0295|consen 387 TAPYVV--------TGSVDQTVKVWEC 405 (406)
T ss_pred CCceEE--------eccccceeeeeec
Confidence 988777 8888999999963
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-33 Score=272.80 Aligned_cols=271 Identities=21% Similarity=0.360 Sum_probs=229.2
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
+..|-.++|+| ....+.++-.+|.|++||.+-+ .++..|..|.+ +|.+++|+|.+.+++||+.|-.
T Consensus 9 SsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~------------tli~rFdeHdG-pVRgv~FH~~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 9 SSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMG------------TLIDRFDEHDG-PVRGVDFHPTQPLFVSGGDDYK 74 (1202)
T ss_pred cccccceecCC-CCCEEEEeecCceeeeehhhhh------------hHHhhhhccCC-ccceeeecCCCCeEEecCCccE
Confidence 45688999999 6668889999999999999887 66778899988 8999999999999999999999
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
|++|+..+..+ +.++.+|.+-|..+.||+.- -.++++|+
T Consensus 75 IkVWnYk~rrc----------------------------------------lftL~GHlDYVRt~~FHhey-PWIlSASD 113 (1202)
T KOG0292|consen 75 IKVWNYKTRRC----------------------------------------LFTLLGHLDYVRTVFFHHEY-PWILSASD 113 (1202)
T ss_pred EEEEeccccee----------------------------------------hhhhccccceeEEeeccCCC-ceEEEccC
Confidence 99999986544 36788999999999999998 48999999
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC------------------
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV------------------ 361 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~------------------ 361 (496)
|.+|+||+..+++ ++..+.+|...|.|..|+| ...+++++|.|.+||+||+.-+.....
T Consensus 114 DQTIrIWNwqsr~--~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL 190 (1202)
T KOG0292|consen 114 DQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL 190 (1202)
T ss_pred CCeEEEEeccCCc--eEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence 9999999999988 7888899999999999999 899999999999999999875432110
Q ss_pred -----CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997 362 -----GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 436 (496)
Q Consensus 362 -----~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 436 (496)
...-+.+.||.-.|+-++|+|.-+ +++||++|+.|++|.++... .=.+-+..||.+.|.++
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetK-------------aWEvDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETK-------------AWEVDTCRGHYNNVSSV 256 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEecccc-------------ceeehhhhcccCCcceE
Confidence 011245679999999999999988 77899999999999998731 12344568999999999
Q ss_pred EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
-|+|... +++|.| .|++|+|||+. ....++++..-.++-+.+|.||
T Consensus 257 lfhp~q~-lIlSns-------EDksirVwDm~------kRt~v~tfrrendRFW~laahP 302 (1202)
T KOG0292|consen 257 LFHPHQD-LILSNS-------EDKSIRVWDMT------KRTSVQTFRRENDRFWILAAHP 302 (1202)
T ss_pred EecCccc-eeEecC-------CCccEEEEecc------cccceeeeeccCCeEEEEEecC
Confidence 9999665 555544 55999999999 5677788876677888888776
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=261.96 Aligned_cols=267 Identities=19% Similarity=0.308 Sum_probs=230.0
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
..|+..|.++.++| ....++++-.+|.|.|||.++. ..+..+.-..- +|.+..|-+..+++++|+.
T Consensus 10 ~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetq------------tmVksfeV~~~-PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQ------------TMVKSFEVSEV-PVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred hccCCceeeeecCC-CCceEEEeeecCeeEEEecccc------------eeeeeeeeccc-chhhheeeeccceEEEecC
Confidence 35889999999999 5567778888999999999998 44555555444 7899999999999999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
|..|+|++.++. +.+..|..|.+-|.+++.||.. .+++|
T Consensus 76 D~~IrVfnynt~----------------------------------------ekV~~FeAH~DyIR~iavHPt~-P~vLt 114 (794)
T KOG0276|consen 76 DMQIRVFNYNTG----------------------------------------EKVKTFEAHSDYIRSIAVHPTL-PYVLT 114 (794)
T ss_pred CceEEEEecccc----------------------------------------eeeEEeeccccceeeeeecCCC-CeEEe
Confidence 999999999754 3358899999999999999999 58999
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~ 376 (496)
+|+|-+|++||....- .+..++.+|+..|.+++|+|.+.+.||+++.|++|++|.+.+ ..+..++++|...|+
T Consensus 115 sSDDm~iKlW~we~~w-a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGVN 187 (794)
T KOG0276|consen 115 SSDDMTIKLWDWENEW-ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGVN 187 (794)
T ss_pred cCCccEEEEeeccCce-eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC------CCCceeeeccccCcc
Confidence 9999999999997654 467889999999999999999999999999999999999998 788999999999999
Q ss_pred EEEEcCCC--CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997 377 CVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 454 (496)
Q Consensus 377 ~l~~sp~~--~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~ 454 (496)
++.+-+-| ++| +||++|.+|+|||..+. .++.++.||...|..+.|+|.-+.++
T Consensus 188 ~Vdyy~~gdkpyl-IsgaDD~tiKvWDyQtk---------------~CV~TLeGHt~Nvs~v~fhp~lpiii-------- 243 (794)
T KOG0276|consen 188 CVDYYTGGDKPYL-ISGADDLTIKVWDYQTK---------------SCVQTLEGHTNNVSFVFFHPELPIII-------- 243 (794)
T ss_pred eEEeccCCCcceE-EecCCCceEEEeecchH---------------HHHHHhhcccccceEEEecCCCcEEE--------
Confidence 99998754 665 59999999999999885 56777899999999999999877554
Q ss_pred CCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 455 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 455 sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
|||.||+++||+-. +-.+..+|.-.-++|++++-.
T Consensus 244 sgsEDGTvriWhs~------Ty~lE~tLn~gleRvW~I~~~ 278 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSK------TYKLEKTLNYGLERVWCIAAH 278 (794)
T ss_pred EecCCccEEEecCc------ceehhhhhhcCCceEEEEeec
Confidence 56666999999988 566667777667778887643
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-32 Score=242.52 Aligned_cols=280 Identities=21% Similarity=0.414 Sum_probs=219.8
Q ss_pred eEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 133 KHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
+....+|.++|.++++.-.+ ...|++++.|.++++|.++.+.... +.....+||.. .|-+++..++|..
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~--------~~~~~~~GHk~-~V~sVsv~~sgtr 207 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV--------KALKVCRGHKR-SVDSVSVDSSGTR 207 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh--------hHHhHhccccc-ceeEEEecCCCCe
Confidence 45677999999988876523 3369999999999999998875432 33344559998 7999999999999
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+++|+.|.+|.||+............. .........--......|+..+.+|..+|.++.|++.
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s---------------~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~- 271 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSS---------------NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA- 271 (423)
T ss_pred EEeecccceeeecccCCCccccccccc---------------hhhhhhhhhhhcccccCceEEecccccceeeEEEcCC-
Confidence 999999999999994332111000000 0000000111122345677899999999999999983
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
..+++++.|.+|+.||+.++. ..... .....++|++.+| ...+||+|+.|..|++||.|+... ....++|.+
T Consensus 272 -~v~yS~SwDHTIk~WDletg~--~~~~~-~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g---s~v~~s~~g 343 (423)
T KOG0313|consen 272 -TVIYSVSWDHTIKVWDLETGG--LKSTL-TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG---SVVSQSLIG 343 (423)
T ss_pred -CceEeecccceEEEEEeeccc--ceeee-ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC---ceeEEeeec
Confidence 589999999999999999988 34433 4567899999999 899999999999999999998642 345678899
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
|++.|.++.|+|...++|++++.|+++++||++.. ...++.+.+|.+.|.++.|+. +..++
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------------k~plydI~~h~DKvl~vdW~~-~~~Iv---- 404 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------------KAPLYDIAGHNDKVLSVDWNE-GGLIV---- 404 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------------CCcceeeccCCceEEEEeccC-CceEE----
Confidence 99999999999999999999999999999999984 246888999999999999996 44444
Q ss_pred CCCCCCCCCCeEEEeecC
Q 010997 451 DDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~ 468 (496)
|||.|++|+|+.-.
T Consensus 405 ----SGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 405 ----SGGADNKLRIFKGS 418 (423)
T ss_pred ----eccCcceEEEeccc
Confidence 78888999999765
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=259.75 Aligned_cols=265 Identities=17% Similarity=0.328 Sum_probs=214.4
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
+++..+|...+++++|+| |+.++|||+.||.|+|||...+ -+..++..|+. .|+++.|+..|+.|+
T Consensus 343 VlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sg------------fC~vTFteHts-~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSG------------FCFVTFTEHTS-GVTAVQFTARGNVLL 408 (893)
T ss_pred eeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCc------------eEEEEeccCCC-ceEEEEEEecCCEEE
Confidence 567789999999999999 9999999999999999999988 78889999998 699999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCC
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSA 291 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~ 291 (496)
+.+-||+|+.||+...... ++|.. ..-...|++..|.|
T Consensus 409 ssSLDGtVRAwDlkRYrNf----------------------------------------RTft~P~p~QfscvavD~sG- 447 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNF----------------------------------------RTFTSPEPIQFSCVAVDPSG- 447 (893)
T ss_pred EeecCCeEEeeeeccccee----------------------------------------eeecCCCceeeeEEEEcCCC-
Confidence 9999999999999865432 22222 12345788888988
Q ss_pred ceEEEEcCCC-eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 292 QEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 292 ~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
.++++|+.|. .|.+|++.+++ .+-.+.+|+++|.+++|+| .+..||+||.|.+|++||+-.. ...+.++.
T Consensus 448 elV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s-----~~~vEtl~- 518 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSS-----SGTVETLE- 518 (893)
T ss_pred CEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeecc-----CceeeeEe-
Confidence 6777777765 59999999999 7888899999999999999 8999999999999999999862 13455554
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCC-----CeeEEEecCCCCCcceEEecCCCCcE
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP-----AGLFFQHAGHRDKVVDFHWNASDPWT 445 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~~~~~p~~~~l 445 (496)
+...+..++|+|+|.. +|++..||.|.+||.....+....+.+.+..+ ..............+.+++++||..+
T Consensus 519 i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCI 597 (893)
T ss_pred eccceeEEEEcCCCCe-EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEE
Confidence 6778999999999996 58899999999999987544433333222111 11222233345678999999999988
Q ss_pred EEEecCCCCCCCCCCeEEEeecCCC
Q 010997 446 VVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 446 ~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
+ +||..+.|+||++.+.
T Consensus 598 l--------AgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 598 L--------AGGESNSICIYDVPEG 614 (893)
T ss_pred E--------ecCCcccEEEEECchh
Confidence 8 7888899999999843
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.3e-32 Score=252.91 Aligned_cols=266 Identities=25% Similarity=0.471 Sum_probs=224.4
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+|.+.|++++|+| ++++|++++.||.|++|++.+. .....+.+|.. .+..+.|+|++++|++++.
T Consensus 6 ~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 6 KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETG------------ELLRTLKGHTG-PVRDVAASADGTYLASGSS 71 (289)
T ss_pred cccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCC------------CcEEEEecCCc-ceeEEEECCCCCEEEEEcC
Confidence 47999999999999 7889999999999999999877 45567778877 5789999999999999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
||.|++||+.+.. ....+..|...|.++.|++++ .++++
T Consensus 72 ~~~i~i~~~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~~~~ 110 (289)
T cd00200 72 DKTIRLWDLETGE----------------------------------------CVRTLTGHTSYVSSVAFSPDG-RILSS 110 (289)
T ss_pred CCeEEEEEcCccc----------------------------------------ceEEEeccCCcEEEEEEcCCC-CEEEE
Confidence 9999999997531 225566788899999999986 78888
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~ 376 (496)
++.|+.|.+||+++.+ ....+..|...+.+++|+| ++.++++++.||.|++||++. +..+..+..|...|.
T Consensus 111 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~ 181 (289)
T cd00200 111 SSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT------GKCVATLTGHTGEVN 181 (289)
T ss_pred ecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccc------cccceeEecCccccc
Confidence 8889999999998766 4556667889999999999 788999888899999999997 677888889999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 456 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg 456 (496)
+++|+|++..+ ++++.|+.|++||+... ..+..+.+|...|.+++|+|+ ..++++++
T Consensus 182 ~~~~~~~~~~l-~~~~~~~~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~------ 238 (289)
T cd00200 182 SVAFSPDGEKL-LSSSSDGTIKLWDLSTG---------------KCLGTLRGHENGVNSVAFSPD-GYLLASGS------ 238 (289)
T ss_pred eEEECCCcCEE-EEecCCCcEEEEECCCC---------------ceecchhhcCCceEEEEEcCC-CcEEEEEc------
Confidence 99999999755 57777999999999873 334445578889999999998 45565444
Q ss_pred CCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 457 GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 457 g~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.||.|++|++. .+..+..+..|...|.+++|+|
T Consensus 239 -~~~~i~i~~~~------~~~~~~~~~~~~~~i~~~~~~~ 271 (289)
T cd00200 239 -EDGTIRVWDLR------TGECVQTLSGHTNSVTSLAWSP 271 (289)
T ss_pred -CCCcEEEEEcC------CceeEEEccccCCcEEEEEECC
Confidence 35999999998 4666777778999999999986
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-33 Score=263.13 Aligned_cols=259 Identities=21% Similarity=0.357 Sum_probs=217.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS 213 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~s 213 (496)
-..+|+..|.++.... .+.+||||+.|.++++|.+++.... .-+.....||+. .|.+++++..+ .+|++
T Consensus 360 ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~--------~~~~a~~~gH~~-svgava~~~~~asffvs 429 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSK--------SLCVAQANGHTN-SVGAVAGSKLGASFFVS 429 (775)
T ss_pred EEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcch--------hhhhhhhccccc-ccceeeecccCccEEEE
Confidence 4569999999999545 5689999999999999999554222 245566789998 68999997654 48999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
+|.|+++++|++........ + ...........|...|++++.+|++ .+
T Consensus 430 vS~D~tlK~W~l~~s~~~~~--~-----------------------------~~~~~~~t~~aHdKdIN~Vaia~nd-kL 477 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAF--P-----------------------------IVLTCRYTERAHDKDINCVAIAPND-KL 477 (775)
T ss_pred ecCCceEEEecCCCcccccc--c-----------------------------ceehhhHHHHhhcccccceEecCCC-ce
Confidence 99999999999975211100 0 0111112345799999999999998 89
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
++|||.|.+.+||++.... ...++.+|...|.|+.|+| ..+++||+|.|++|+||.+.+ ..++.+|.||..
T Consensus 478 iAT~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~------fSClkT~eGH~~ 548 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST------FSCLKTFEGHTS 548 (775)
T ss_pred EEecccccceeeecccCce--EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecc------ceeeeeecCccc
Confidence 9999999999999999655 7888999999999999999 899999999999999999999 889999999999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
.|..++|-.++..| +|++.||.|++|++.+. .+...+.+|.+.|++++-+|....++
T Consensus 549 aVlra~F~~~~~ql-iS~~adGliKlWnikt~---------------eC~~tlD~H~DrvWaL~~~~~~~~~~------- 605 (775)
T KOG0319|consen 549 AVLRASFIRNGKQL-ISAGADGLIKLWNIKTN---------------ECEMTLDAHNDRVWALSVSPLLDMFV------- 605 (775)
T ss_pred eeEeeeeeeCCcEE-EeccCCCcEEEEeccch---------------hhhhhhhhccceeEEEeecCccceeE-------
Confidence 99999999999965 59999999999999985 56777899999999999999887544
Q ss_pred CCCCCCCeEEEeecC
Q 010997 454 DSTGGGGTLQIWRMS 468 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~ 468 (496)
|||.||.|.+|.=.
T Consensus 606 -tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 606 -TGGGDGRIIFWKDV 619 (775)
T ss_pred -ecCCCeEEEEeecC
Confidence 78888999999654
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2e-33 Score=245.94 Aligned_cols=309 Identities=17% Similarity=0.266 Sum_probs=245.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
...+..|++.|.+++.+| +.+++|||+.|....||++.++ .....+.+|.+ .|+++.|+.+|.+||
T Consensus 57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~g------------e~~~eltgHKD-SVt~~~FshdgtlLA 122 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTG------------EFAGELTGHKD-SVTCCSFSHDGTLLA 122 (399)
T ss_pred eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCC------------cceeEecCCCC-ceEEEEEccCceEEE
Confidence 456678999999999999 8999999999999999999998 55678999999 689999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCc--cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDP--ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
||+.+|.|+||...++........ .......-.........+..++.+..|..++....+.+.+|..++++=.|.|+|
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG 202 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC
Confidence 999999999999998765444321 000000000011122334567788888888888889999999999999999998
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 369 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~- 369 (496)
..++++..||+|++||..++. |.............++.++. .+..+..|+.++.+++-...+ ++.+....
T Consensus 203 -Kr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~s------gKVv~~~n~ 273 (399)
T KOG0296|consen 203 -KRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGS------GKVVNCNNG 273 (399)
T ss_pred -ceEEEEecCceEEEEecCCCc-eeEEecccccCcCCcccccc-ccceeEeccCCccEEEEcccc------ceEEEecCC
Confidence 789999999999999999997 23333223345678899998 899999999999999988776 55554444
Q ss_pred -------cCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec
Q 010997 370 -------GHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 439 (496)
Q Consensus 370 -------~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 439 (496)
.+...+.+|.+.|. -+ |+|+|+.||+|.|||+... .+.....|..+|+.+.|-
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~----------------~~R~~c~he~~V~~l~w~ 336 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS----------------TLRHICEHEDGVTKLKWL 336 (399)
T ss_pred CCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEecccc----------------hhheeccCCCceEEEEEc
Confidence 35555566666554 44 7899999999999999883 233345688899999999
Q ss_pred CCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 440 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 440 p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+ ..+++ +++.||.|+.||.+ +|+++.++.||+.+|.+++.+|
T Consensus 337 ~-t~~l~--------t~c~~g~v~~wDaR------tG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 337 N-TDYLL--------TACANGKVRQWDAR------TGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred C-cchhe--------eeccCceEEeeecc------ccceEEEEecCchheeEEEEcC
Confidence 8 67777 45556999999999 8999999999999999999887
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=244.94 Aligned_cols=229 Identities=21% Similarity=0.413 Sum_probs=205.1
Q ss_pred CCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCC
Q 010997 184 NSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 263 (496)
Q Consensus 184 ~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (496)
..+....+.||.+ .|.|+++.|.+.+|+||+.|++|+|||+.+++.
T Consensus 140 pwKl~rVi~gHlg-WVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------------------------------- 185 (460)
T KOG0285|consen 140 PWKLYRVISGHLG-WVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------------------------------- 185 (460)
T ss_pred cceehhhhhhccc-eEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------------------
Confidence 3455667899998 799999999999999999999999999987654
Q ss_pred CCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc
Q 010997 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 343 (496)
Q Consensus 264 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs 343 (496)
..++.+|...|..+++++.. .++++++.|+.|+.||+...+ .++.+.+|-+.|.|++.+| .-..|++|+
T Consensus 186 -------kltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nk--vIR~YhGHlS~V~~L~lhP-Tldvl~t~g 254 (460)
T KOG0285|consen 186 -------KLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNK--VIRHYHGHLSGVYCLDLHP-TLDVLVTGG 254 (460)
T ss_pred -------EEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhh--hHHHhccccceeEEEeccc-cceeEEecC
Confidence 36788999999999999999 589999999999999999888 7888889999999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997 344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (496)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (496)
.|.++++||+|+ ...++.+.+|..+|.++.+.|..+.+ ++|+.|++|++||++.+ ..+
T Consensus 255 rDst~RvWDiRt------r~~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~ag---------------kt~ 312 (460)
T KOG0285|consen 255 RDSTIRVWDIRT------RASVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAG---------------KTM 312 (460)
T ss_pred CcceEEEeeecc------cceEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccC---------------cee
Confidence 999999999999 78999999999999999999988875 59999999999999985 456
Q ss_pred EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997 424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~ 494 (496)
..+..|...|.+++.+|. .+++||++.| .|+-|++. .++.++.+.+|+..|++++.
T Consensus 313 ~tlt~hkksvral~lhP~-e~~fASas~d--------nik~w~~p------~g~f~~nlsgh~~iintl~~ 368 (460)
T KOG0285|consen 313 ITLTHHKKSVRALCLHPK-ENLFASASPD--------NIKQWKLP------EGEFLQNLSGHNAIINTLSV 368 (460)
T ss_pred EeeecccceeeEEecCCc-hhhhhccCCc--------cceeccCC------ccchhhccccccceeeeeee
Confidence 677889999999999995 5677766654 69999999 78999999999999988864
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9e-32 Score=229.84 Aligned_cols=269 Identities=20% Similarity=0.355 Sum_probs=219.3
Q ss_pred cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 010997 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (496)
Q Consensus 93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~ 172 (496)
++++.+..|++|++.- +... .-...+|.++|..+.|++ ++..|++++.|.+|+.||.++
T Consensus 63 aSgG~Dr~I~LWnv~g---------------dceN-----~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 63 ASGGSDRAIVLWNVYG---------------DCEN-----FWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred eecCCcceEEEEeccc---------------cccc-----eeeeccccceeEeeeecc-CCCEEEEecCCceEEEEeccc
Confidence 4678899999998632 1111 123339999999999999 889999999999999999999
Q ss_pred CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceecc
Q 010997 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251 (496)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (496)
+ +....+++|.+ .|+++.-+.-|. .+.||+.||++++||+++....
T Consensus 122 G------------~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-------------------- 168 (338)
T KOG0265|consen 122 G------------KRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-------------------- 168 (338)
T ss_pred c------------eeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchh--------------------
Confidence 9 67788999998 688888554455 5668999999999999864332
Q ss_pred CCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997 252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331 (496)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 331 (496)
+++ .....++++.|...+ ..+++|+-|+.|++||+|... ...++.+|.+.|+.+..
T Consensus 169 --------------------~t~-~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsl 224 (338)
T KOG0265|consen 169 --------------------KTF-ENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSL 224 (338)
T ss_pred --------------------hcc-ccceeEEEEEecccc-cceeeccccCceeeeccccCc--ceEEeecccCceeeEEe
Confidence 111 224578999999888 679999999999999999988 78888999999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC----CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~----~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~ 407 (496)
+| ++.++.+-+.|.++++||+|-..+. .+++..+.+|.. ....++|+|++.. +.+|+.|+.+++||....
T Consensus 225 s~-~gs~llsnsMd~tvrvwd~rp~~p~--~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r-- 298 (338)
T KOG0265|consen 225 SR-YGSFLLSNSMDNTVRVWDVRPFAPS--QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSR-- 298 (338)
T ss_pred cc-CCCccccccccceEEEEEecccCCC--CceEEEeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccc--
Confidence 99 9999999999999999999975432 345777776643 4568899999996 578999999999998774
Q ss_pred ccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997 408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 466 (496)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~ 466 (496)
.+++.+.||.+.|+.++|+|..+.++ +++.|.+|.+=.
T Consensus 299 -------------~~lyklpGh~gsvn~~~Fhp~e~iil--------s~~sdk~i~lge 336 (338)
T KOG0265|consen 299 -------------RILYKLPGHYGSVNEVDFHPTEPIIL--------SCSSDKTIYLGE 336 (338)
T ss_pred -------------cEEEEcCCcceeEEEeeecCCCcEEE--------EeccCceeEeec
Confidence 68889999999999999999887655 455568887643
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.9e-31 Score=280.25 Aligned_cols=287 Identities=19% Similarity=0.233 Sum_probs=216.1
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEe
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG 214 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg 214 (496)
...|.+.|++++|+| ++++||+|+.|+.|+|||+........ ....+...+.++. .+.+++|++. +.+|++|
T Consensus 479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~~~~~--~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVELASRS--KLSGICWNSYIKSQVASS 551 (793)
T ss_pred ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccc----ccccceEEecccC--ceeeEEeccCCCCEEEEE
Confidence 345999999999999 889999999999999999865311100 0112334444443 5889999885 6799999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.||+|++||+.++. .+..+.+|.+.|++++|+|.++.+|
T Consensus 552 ~~Dg~v~lWd~~~~~----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 552 NFEGVVQVWDVARSQ----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eCCCeEEEEECCCCe----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEE
Confidence 999999999987532 2356778999999999998544799
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
++|+.||+|++||++++. ....+. +...|.++.|++.++.+|++|+.||.|++||+++. ..++..+.+|...
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~ 663 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGV--SIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKT 663 (793)
T ss_pred EEEcCCCEEEEEECCCCc--EEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCC
Confidence 999999999999999876 444554 34689999997647999999999999999999872 1357788899999
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 454 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~ 454 (496)
|.++.|. ++. .|++++.|+.|+|||+...... .....+..+.+|...+..++|+|++.+ ++
T Consensus 664 V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~---------~~~~~l~~~~gh~~~i~~v~~s~~~~~-la------- 724 (793)
T PLN00181 664 VSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISG---------INETPLHSFMGHTNVKNFVGLSVSDGY-IA------- 724 (793)
T ss_pred EEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccc---------cCCcceEEEcCCCCCeeEEEEcCCCCE-EE-------
Confidence 9999997 455 4679999999999999753110 112356678899999999999998875 45
Q ss_pred CCCCCCeEEEeecCCCCcC-----CchHHH--HHHHhccceEEEeccCC
Q 010997 455 STGGGGTLQIWRMSDLIYR-----PQDEVL--AELEKFKAHVISCTSKP 496 (496)
Q Consensus 455 sgg~Dg~i~iw~~~~~~~~-----~~~~~~--~~l~~h~~~v~~~~~sP 496 (496)
+|+.||.|+||+....... .....+ ..+..|...|.+++|+|
T Consensus 725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 4555699999997632100 000011 12345667899999987
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=243.16 Aligned_cols=278 Identities=20% Similarity=0.314 Sum_probs=221.3
Q ss_pred cccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997 129 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (496)
Q Consensus 129 ~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~ 208 (496)
|......+..|+++|.-+.|++ +|++||+++.|.+..||++.... ..+...++.||.. +|..+.|+||.
T Consensus 213 p~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~---------~~kl~~tlvgh~~-~V~yi~wSPDd 281 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDV---------HFKLKKTLVGHSQ-PVSYIMWSPDD 281 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCc---------ceeeeeeeecccC-ceEEEEECCCC
Confidence 3333344557999999999999 99999999999999999987662 1356788999998 78999999999
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
++|++|+.|..+.+||+.++....... .+|...+.+++|.|
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y~---------------------------------------~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLYP---------------------------------------SGLGFSVSSCAWCP 322 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhcc---------------------------------------cCcCCCcceeEEcc
Confidence 999999999999999998775432111 13457889999999
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
|+ ..|++|+.|+.|..||+..... -.-.......|.+++..+ +|.++++.+.|..|++++... ..... +
T Consensus 323 Dg-~~~V~Gs~dr~i~~wdlDgn~~--~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~------~~dr~-l 391 (519)
T KOG0293|consen 323 DG-FRFVTGSPDRTIIMWDLDGNIL--GNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA------RVDRG-L 391 (519)
T ss_pred CC-ceeEecCCCCcEEEecCCcchh--hcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh------hhhhc-c
Confidence 99 7899999999999999976541 111112335689999999 999999999999999999887 23332 3
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC--CcceEEecCCCCcEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTV 446 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l~ 446 (496)
.....+|++++.|.++.++| +.-.+..|++||+... .++....||.. -|..-+|-..+..++
T Consensus 392 ise~~~its~~iS~d~k~~L-vnL~~qei~LWDl~e~---------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 392 ISEEQPITSFSISKDGKLAL-VNLQDQEIHLWDLEEN---------------KLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred ccccCceeEEEEcCCCcEEE-EEcccCeeEEeecchh---------------hHHHHhhcccccceEEEeccCCCCcceE
Confidence 33567899999999999665 6667899999999864 44555667765 344456665555678
Q ss_pred EEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 447 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|+|+ |+.|+||+.. ++.++.+|.||...|++|+|+|
T Consensus 456 aSGSE-------D~kvyIWhr~------sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 456 ASGSE-------DSKVYIWHRI------SGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred EecCC-------CceEEEEEcc------CCceeEeecCCcceeeEEecCC
Confidence 75555 4999999999 8999999999999999999998
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.8e-32 Score=237.44 Aligned_cols=275 Identities=20% Similarity=0.382 Sum_probs=228.3
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC---
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--- 209 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--- 209 (496)
...-+.|.+.|.++... ++.|.+|+.||.++|||... +....+.||.+ +|.+++|.-.+.
T Consensus 98 pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~G-------------k~~~~~~Ght~-~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKG-------------KSIKTIVGHTG-PIKSVAWVIKNSSSC 160 (423)
T ss_pred ccccccchhhhhhhccc---CceEEEeecCCeeEEEecCC-------------ceEEEEecCCc-ceeeeEEEecCCccc
Confidence 34557899999999875 57899999999999999865 45678899998 688888865443
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
.|++++.|.++++|-++.+... .+.+....||...|.++...++
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~------------------------------------~~~~~~~~GHk~~V~sVsv~~s 204 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENK------------------------------------VKALKVCRGHKRSVDSVSVDSS 204 (423)
T ss_pred eEEEecCCceEEEEEecCchhh------------------------------------hhHHhHhcccccceeEEEecCC
Confidence 5999999999999998765331 1222444599999999999999
Q ss_pred CCceEEEEcCCCeEEEEEccCC-----------------------CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997 290 SAQEFCSVGDDSCLILWDARVG-----------------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg 346 (496)
+ ..|++|+.|.+|.||+..+. ....+.++.+|..+|.++.|++ ...+.+++.|.
T Consensus 205 g-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDH 281 (423)
T KOG0313|consen 205 G-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDH 281 (423)
T ss_pred C-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccc
Confidence 9 89999999999999993211 0123556789999999999997 77899999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (496)
+|+.||+.+ +....++.+ ...++++..+|... |||+|+.|..|++||.+.+ ......+++
T Consensus 282 TIk~WDlet------g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~------------~gs~v~~s~ 341 (423)
T KOG0313|consen 282 TIKVWDLET------GGLKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTG------------DGSVVSQSL 341 (423)
T ss_pred eEEEEEeec------ccceeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCC------------CCceeEEee
Confidence 999999999 777777764 66789999999877 7889999999999999985 233567788
Q ss_pred cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
.||.+.|.++.|+|...++++|+|.| |++++||++. ...++..+.+|...|.+++|.
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D-------~t~klWDvRS-----~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYD-------NTVKLWDVRS-----TKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecC-------CeEEEEEecc-----CCCcceeeccCCceEEEEecc
Confidence 99999999999999999999977766 9999999993 345899999999999999985
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-31 Score=236.52 Aligned_cols=250 Identities=22% Similarity=0.383 Sum_probs=203.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.....+|..+|..+.|+| |.++|++|+.|-.+.+||+.++... ..+..-.+..+.+++|.|||..++
T Consensus 262 ~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~------------~~y~~~~~~S~~sc~W~pDg~~~V 328 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLR------------HLYPSGLGFSVSSCAWCPDGFRFV 328 (519)
T ss_pred eeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcchhh------------hhcccCcCCCcceeEEccCCceeE
Confidence 346679999999999999 7778888888889999999998432 222222233688999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCC
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSA 291 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~ 291 (496)
+|+.|++|..||++.... ....+ ....|.+++..+||
T Consensus 329 ~Gs~dr~i~~wdlDgn~~-----------------------------------------~~W~gvr~~~v~dlait~Dg- 366 (519)
T KOG0293|consen 329 TGSPDRTIIMWDLDGNIL-----------------------------------------GNWEGVRDPKVHDLAITYDG- 366 (519)
T ss_pred ecCCCCcEEEecCCcchh-----------------------------------------hcccccccceeEEEEEcCCC-
Confidence 999999999999975321 11111 12468999999999
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
..+++.+.|..|++|+..+... .. ...-..+|++++.|. ++.++++.=.+..|++||+.. ...+..+.||
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~d--r~-lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e------~~lv~kY~Gh 436 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVD--RG-LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE------NKLVRKYFGH 436 (519)
T ss_pred cEEEEEecccceeeechhhhhh--hc-cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecch------hhHHHHhhcc
Confidence 6777788999999999887652 21 223457899999999 899999999999999999997 7888999998
Q ss_pred CCC--EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 372 SAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 372 ~~~--i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
+.. |..-+|--....++|+|++|+.|+||+..++ .++..+.||...|++++|+|.++.++||+
T Consensus 437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred cccceEEEeccCCCCcceEEecCCCceEEEEEccCC---------------ceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence 764 5566777655557899999999999999885 67888999999999999999999999977
Q ss_pred cCCCCCCCCCCeEEEeecCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|+| |+|+||.+.+
T Consensus 502 sDD-------gtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDD-------GTIRIWGPSD 514 (519)
T ss_pred CCC-------CeEEEecCCc
Confidence 766 9999999884
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=246.31 Aligned_cols=269 Identities=22% Similarity=0.398 Sum_probs=220.7
Q ss_pred CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~ 173 (496)
+++.+..++||++- +. ...+....+|..+|..++|++ ++..+.+++.|+.|++||++++
T Consensus 232 S~gmD~~vklW~vy---------------~~-----~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 232 SGGMDGLVKLWNVY---------------DD-----RRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred ecCCCceEEEEEEe---------------cC-----cceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccc
Confidence 56788999999863 21 113445679999999999999 8888999999999999999999
Q ss_pred CCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
+. ....|.+..++|+.|+|++ +.+++|+.|+.|+.||++++..
T Consensus 291 ------------~~--~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---------------------- 334 (503)
T KOG0282|consen 291 ------------QV--LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---------------------- 334 (503)
T ss_pred ------------eE--EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----------------------
Confidence 33 3445666678999999998 7899999999999999986543
Q ss_pred CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec
Q 010997 253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332 (496)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 332 (496)
++.+..|.+.|.++.|-+++ ..|++.++|++++||+.+.+- +.......+.....|+..+
T Consensus 335 ------------------vqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~ 394 (503)
T KOG0282|consen 335 ------------------VQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLH 394 (503)
T ss_pred ------------------HHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecC
Confidence 36677899999999999999 789999999999999998876 2233334455677899999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC--CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 410 (496)
Q Consensus 333 p~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~--~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~ 410 (496)
| ++.+++.-+.|..|.+|.+...-. ...-..|++|. +.-..+.|||||++ |++|+.||.+.+||.++.
T Consensus 395 P-~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~----- 464 (503)
T KOG0282|consen 395 P-NGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTT----- 464 (503)
T ss_pred C-CCCeehhhccCceEEEEecccccc---cCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhh-----
Confidence 9 999999999999999999775322 23345577775 45678999999996 579999999999999885
Q ss_pred CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997 411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 466 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~ 466 (496)
.++..+..|..++..+.|+|..+..+| |+|+||.|++|+
T Consensus 465 ----------kl~~~lkah~~~ci~v~wHP~e~Skva-------t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 ----------KLVSKLKAHDQPCIGVDWHPVEPSKVA-------TCGWDGLIKIWD 503 (503)
T ss_pred ----------hhhhccccCCcceEEEEecCCCcceeE-------ecccCceeEecC
Confidence 566778899999999999999888887 566779999996
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-31 Score=262.08 Aligned_cols=249 Identities=23% Similarity=0.478 Sum_probs=209.7
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+|...|++++|+| ++.++++++.|++|+|||+... ...+.++.+|.. .|++++|+|+++++++|+.
T Consensus 200 ~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~-----------~~~~~~l~gH~~-~v~~~~f~p~g~~i~Sgs~ 266 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDD-----------GRNLKTLKGHST-YVTSVAFSPDGNLLVSGSD 266 (456)
T ss_pred cccccceeeeEECC-CCcEEEEecCCceEEEeeccCC-----------CeEEEEecCCCC-ceEEEEecCCCCEEEEecC
Confidence 68999999999999 8889999999999999999332 166789999998 6899999999999999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
|++|+|||++++. +...+.+|.+.|++++|++++ .+|++
T Consensus 267 D~tvriWd~~~~~----------------------------------------~~~~l~~hs~~is~~~f~~d~-~~l~s 305 (456)
T KOG0266|consen 267 DGTVRIWDVRTGE----------------------------------------CVRKLKGHSDGISGLAFSPDG-NLLVS 305 (456)
T ss_pred CCcEEEEeccCCe----------------------------------------EEEeeeccCCceEEEEECCCC-CEEEE
Confidence 9999999998643 347899999999999999999 79999
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCC--CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
++.|+.|++||+.++...+...+..+.. .+++++|+| ++.++++++.|+.+++||++. +..+..+.+|...
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~------~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRS------GKSVGTYTGHSNL 378 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccC------CcceeeecccCCc
Confidence 9999999999999887321234444444 599999999 999999999999999999998 7888888888875
Q ss_pred ---EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC-CCCcceEEecCCCCcEEEEec
Q 010997 375 ---VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 375 ---i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~~l~~s~s 450 (496)
+.+...++.+.+ +.+|+.|+.|++||+... ..+..+.+| ...|..++|+|... ++++++
T Consensus 379 ~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~-~~~s~s 441 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTEN-LIASSS 441 (456)
T ss_pred ceeEecccccCCCCe-EEEEeCCceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcC-eeeecC
Confidence 445556777885 569999999999999874 345557788 88999999999654 565543
Q ss_pred CCCCCCCCCCeEEEeecC
Q 010997 451 DDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~ 468 (496)
...|+.+++|...
T Consensus 442 -----~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 -----FEGDGLIRLWKYD 454 (456)
T ss_pred -----cCCCceEEEecCC
Confidence 2257999999875
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-29 Score=236.25 Aligned_cols=279 Identities=24% Similarity=0.453 Sum_probs=224.9
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
|..++.|.|. ...++.+. .++.+.+|+..... .......|...+..
T Consensus 11 ~i~~~~~~~~--------~~~l~~~~-----~~g~i~i~~~~~~~---------------------~~~~~~~~~~~i~~ 56 (289)
T cd00200 11 GVTCVAFSPD--------GKLLATGS-----GDGTIKVWDLETGE---------------------LLRTLKGHTGPVRD 56 (289)
T ss_pred CEEEEEEcCC--------CCEEEEee-----cCcEEEEEEeeCCC---------------------cEEEEecCCcceeE
Confidence 6667888775 13444443 46788888764211 22344578889999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~ 225 (496)
+.|+| ++++|++++.+|.|++||+... +....+..|.. .+.++.|++++.++++++.||.|.+||+
T Consensus 57 ~~~~~-~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 57 VAASA-DGTYLASGSSDKTIRLWDLETG------------ECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEECC-CCCEEEEEcCCCeEEEEEcCcc------------cceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 99999 6789999999999999999876 45566778876 6899999999888888888999999999
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (496)
.+.. ....+..|...|.+++|+|++ .++++++.|+.|++
T Consensus 123 ~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i 161 (289)
T cd00200 123 ETGK----------------------------------------CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKL 161 (289)
T ss_pred CCcE----------------------------------------EEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEE
Confidence 7432 124555788899999999986 68888888999999
Q ss_pred EEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC
Q 010997 306 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS 385 (496)
Q Consensus 306 wd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~ 385 (496)
||++..+ ....+..|...+.+++|+| ++..+++++.||.|++||++. +..+..+..|...|.+++|+|++.
T Consensus 162 ~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 162 WDLRTGK--CVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred EEccccc--cceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCC------CceecchhhcCCceEEEEEcCCCc
Confidence 9998776 4556668888999999999 888899999999999999998 677888878999999999999965
Q ss_pred CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEe
Q 010997 386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 465 (496)
Q Consensus 386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw 465 (496)
++++++.||.|++||+... ..+..+.+|...|.+++|+|++..++ +++.||.|++|
T Consensus 233 -~~~~~~~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~--------~~~~d~~i~iw 288 (289)
T cd00200 233 -LLASGSEDGTIRVWDLRTG---------------ECVQTLSGHTNSVTSLAWSPDGKRLA--------SGSADGTIRIW 288 (289)
T ss_pred -EEEEEcCCCcEEEEEcCCc---------------eeEEEccccCCcEEEEEECCCCCEEE--------EecCCCeEEec
Confidence 6777777999999999864 34555668888999999999877655 55566999999
Q ss_pred e
Q 010997 466 R 466 (496)
Q Consensus 466 ~ 466 (496)
+
T Consensus 289 ~ 289 (289)
T cd00200 289 D 289 (289)
T ss_pred C
Confidence 6
No 51
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.7e-30 Score=254.35 Aligned_cols=286 Identities=18% Similarity=0.317 Sum_probs=203.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCcccc--CCCCCCCCceEEecCCCCcceeeeecC-CCCceEEec
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAV--LGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG 215 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~ 215 (496)
|-..|+...+++ ++..+++++.+..+..|+...+...... .+... .....+.+|.+ .|++++|+| ++++|++|+
T Consensus 19 ~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-~~~~~l~GH~~-~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 19 HFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-SNPPILLGQEG-PIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred ceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCC-CCCceEeCCCC-CEEEEEEcCCCCCEEEEEe
Confidence 444566666666 5445667777777778876544211100 01000 11235789988 799999999 788999999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.|++|++||+.+..... ....++..+.+|...|.+++|+|.+.++|+
T Consensus 96 ~DgtIkIWdi~~~~~~~---------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQ---------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred CCCEEEEEecCCCcccc---------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEE
Confidence 99999999997532100 012345678899999999999998767999
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC-
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA- 374 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~- 374 (496)
+++.|++|+|||++++. ....+..|...|.+++|+| ++.+|++|+.|+.|+|||+++ +..+.++.+|.+.
T Consensus 143 Sgs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~ 213 (493)
T PTZ00421 143 SAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAK 213 (493)
T ss_pred EEeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCc
Confidence 99999999999999877 5666778999999999999 899999999999999999998 7788888888765
Q ss_pred EEEEEEcCCCCCEEEEE---eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec-CCCCCcceEEecCCCCcEEEEec
Q 010997 375 VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 375 i~~l~~sp~~~~llas~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
+..+.|.+++..++++| +.|+.|++||++..... +.... .+...+....|++++..+++++.
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p--------------~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP--------------YSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc--------------eeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 45788999888666544 24899999999874221 11111 22344556678998876664322
Q ss_pred CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH-hccceEEEeccCC
Q 010997 451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSKP 496 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~sP 496 (496)
.|+.|++|++.+ ++++..+. .+..++..++|.|
T Consensus 280 -------gDg~Iriwdl~~------~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 280 -------GEGNIRCFELMN------ERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred -------CCCeEEEEEeeC------CceEEEeeccCCCCCcceEecc
Confidence 359999999984 33322222 2334566666655
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.9e-30 Score=269.39 Aligned_cols=263 Identities=17% Similarity=0.233 Sum_probs=202.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEEec
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG 215 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~ 215 (496)
+.+...|.+++|+|..+.+||+++.||+|+|||+.+. +....+.+|.+ .|++++|+| ++.+|+||+
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------------~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS------------QLVTEMKEHEK-RVWSIDYSSADPTLLASGS 595 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC------------eEEEEecCCCC-CEEEEEEcCCCCCEEEEEc
Confidence 3456789999999877889999999999999999877 55677889987 699999997 688999999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.||+|++||+.++.. +..+..+ ..|.++.|++..+.+|+
T Consensus 596 ~Dg~v~iWd~~~~~~----------------------------------------~~~~~~~-~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 596 DDGSVKLWSINQGVS----------------------------------------IGTIKTK-ANICCVQFPSESGRSLA 634 (793)
T ss_pred CCCEEEEEECCCCcE----------------------------------------EEEEecC-CCeEEEEEeCCCCCEEE
Confidence 999999999975422 1334433 57899999765448999
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i 375 (496)
+|+.||.|++||++.... ....+.+|...|.++.|. ++.+|++++.|++|++||++.........++..+.+|...+
T Consensus 635 tgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred EEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 999999999999987653 244556899999999997 47899999999999999998632211246788999999999
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 455 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s 455 (496)
..++|+|++. +||+|+.|+.|++|+............... .+ ..-.....|...|.+++|+|++..++ +
T Consensus 712 ~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~-~~-~~~~~~~~~~~~V~~v~ws~~~~~lv--------a 780 (793)
T PLN00181 712 NFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTI-DP-VSGLEVDDASQFISSVCWRGQSSTLV--------A 780 (793)
T ss_pred eEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccC-Cc-ccccccCCCCcEEEEEEEcCCCCeEE--------E
Confidence 9999999998 578999999999999765311100000000 00 00011234567899999999887765 4
Q ss_pred CCCCCeEEEeec
Q 010997 456 TGGGGTLQIWRM 467 (496)
Q Consensus 456 gg~Dg~i~iw~~ 467 (496)
|+.||.|+||++
T Consensus 781 ~~~dG~I~i~~~ 792 (793)
T PLN00181 781 ANSTGNIKILEM 792 (793)
T ss_pred ecCCCcEEEEec
Confidence 555699999986
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.6e-31 Score=247.48 Aligned_cols=204 Identities=23% Similarity=0.444 Sum_probs=187.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
.-+|.+.+|.+ ..+.+++|++|+.|+||+..+. +.+..+..|.+ -|.+++.+|..++++|+|.|-+
T Consensus 55 ~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~------------ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~ 120 (794)
T KOG0276|consen 55 EVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG------------EKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMT 120 (794)
T ss_pred ccchhhheeee-ccceEEEecCCceEEEEecccc------------eeeEEeecccc-ceeeeeecCCCCeEEecCCccE
Confidence 44788999999 8889999999999999999999 67789999999 6999999999999999999999
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
|++||.+.. ....++|.+|..-|.+++|+|.+++.|++++-
T Consensus 121 iKlW~we~~---------------------------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 121 IKLWDWENE---------------------------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred EEEeeccCc---------------------------------------eeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 999999853 34458899999999999999999899999999
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l 378 (496)
|++|++|.+.+.. +..++.+|...|+|+.+-+. +..+|++|+.|.+|+|||.++ ..++.++.+|...|..+
T Consensus 162 DrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------k~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 162 DRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------KSCVQTLEGHTNNVSFV 233 (794)
T ss_pred cccEEEEEcCCCC--CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch------HHHHHHhhcccccceEE
Confidence 9999999998877 67788899999999999872 235999999999999999999 88999999999999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.|+|.-+ |++||++||+++||+..+.
T Consensus 234 ~fhp~lp-iiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 234 FFHPELP-IIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred EecCCCc-EEEEecCCccEEEecCcce
Confidence 9999998 6789999999999998875
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=6.8e-32 Score=236.02 Aligned_cols=280 Identities=20% Similarity=0.342 Sum_probs=222.8
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+-+|.+.|.|++-+|..-..+|+|+.||.|+|||+... .+..++..|.+ .|.+|++.. ..++++
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G-~V~Gi~v~~--~~~~tv 125 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------------ECIRTFKAHEG-LVRGICVTQ--TSFFTV 125 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhh------------hhhheeecccC-ceeeEEecc--cceEEe
Confidence 347999999999999955588999999999999999987 67788999998 799999976 679999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCC---ceeccC--CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSG---SIIKQS--PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+.|++|+.|.++.. +.......... ...... ....+..+.+|+.....|+..+.--.+.|.++.|+|.
T Consensus 126 gdDKtvK~wk~~~~-------p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpv 198 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP-------PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPV 198 (433)
T ss_pred cCCcceeeeeccCC-------cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCC
Confidence 99999999997752 10000000000 000001 1123445789999999999999999999999999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
...+|++|+.|+.|.|||+|... |+... .....-+.|+|+| ....|++|+.|..+..||+|.+. .++..+.
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~-Pl~KV--i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~ 269 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQAS-PLKKV--ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS-----RPLNVHK 269 (433)
T ss_pred cchheeeeccCCceEEEecccCC-cccee--eeeccccceecCc-cccceeeccccccceehhhhhhc-----ccchhhc
Confidence 88899999999999999999987 22222 2344568999999 99999999999999999999985 8899999
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
+|.++|.++.|||.|.- |++||.|.+|+||..+..... -++ +..-...|.++.|+.|..+++
T Consensus 270 dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SR-------------diY-htkRMq~V~~Vk~S~Dskyi~--- 331 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSR-------------DIY-HTKRMQHVFCVKYSMDSKYII--- 331 (433)
T ss_pred ccceeEEEeccCCCcch-hccccccceEEEeecCCCcch-------------hhh-hHhhhheeeEEEEeccccEEE---
Confidence 99999999999999997 579999999999999874111 111 222345799999999888766
Q ss_pred cCCCCCCCCCCeEEEeecC
Q 010997 450 SDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~ 468 (496)
||+.|+.|++|.-.
T Consensus 332 -----SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 332 -----SGSDDGNVRLWKAK 345 (433)
T ss_pred -----ecCCCcceeeeecc
Confidence 67777999999875
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.9e-31 Score=242.12 Aligned_cols=265 Identities=19% Similarity=0.325 Sum_probs=218.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
....|.+++|+|..+.-+|+.+.- .+.||+..+. ....++....+ .|+++.|..||++|++|+..|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~------------~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTR------------SVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred ccCcceeEecCCCCCCceEEeccc-EEEEEecchh------------hhhhhHHhhcc-ceeEEEeecCCeEEEccCCcC
Confidence 345799999999888777776654 7999998876 33334444455 689999999999999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|+|+|..+. ..++.+.+|+.+|..+.|+|.+..+|++|+
T Consensus 91 ~V~vfD~k~r----------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~s 130 (487)
T KOG0310|consen 91 HVKVFDMKSR----------------------------------------VILRQLYAHQAPVHVTKFSPQDNTMLVSGS 130 (487)
T ss_pred cEEEeccccH----------------------------------------HHHHHHhhccCceeEEEecccCCeEEEecC
Confidence 9999996531 123678899999999999999989999999
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l 378 (496)
+|+.+++||+.+.. ....+.+|++.|.|.+|+|.++.+++||+.||.|++||+|... ..+.++. |..+|.++
T Consensus 131 Dd~v~k~~d~s~a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-----~~v~eln-hg~pVe~v 202 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAY--VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-----SRVVELN-HGCPVESV 202 (487)
T ss_pred CCceEEEEEcCCcE--EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-----ceeEEec-CCCceeeE
Confidence 99999999999877 4557789999999999999888899999999999999999842 5667776 99999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG 458 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~ 458 (496)
.+-|.|. ++|+++ ...|+|||+..+++ ++.....|...|+++++..++..|+ |||-
T Consensus 203 l~lpsgs-~iasAg-Gn~vkVWDl~~G~q--------------ll~~~~~H~KtVTcL~l~s~~~rLl--------S~sL 258 (487)
T KOG0310|consen 203 LALPSGS-LIASAG-GNSVKVWDLTTGGQ--------------LLTSMFNHNKTVTCLRLASDSTRLL--------SGSL 258 (487)
T ss_pred EEcCCCC-EEEEcC-CCeEEEEEecCCce--------------ehhhhhcccceEEEEEeecCCceEe--------eccc
Confidence 9999998 567887 56899999997643 3344455999999999999888888 8889
Q ss_pred CCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 459 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 459 Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|+.|++|++.+ -+.+..+. ..++|.+++.+|
T Consensus 259 D~~VKVfd~t~------~Kvv~s~~-~~~pvLsiavs~ 289 (487)
T KOG0310|consen 259 DRHVKVFDTTN------YKVVHSWK-YPGPVLSIAVSP 289 (487)
T ss_pred ccceEEEEccc------eEEEEeee-cccceeeEEecC
Confidence 99999999873 44444443 678899998887
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.7e-30 Score=245.09 Aligned_cols=242 Identities=21% Similarity=0.430 Sum_probs=207.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec-CCCCcceeeeecCCCCceEEecCCC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~-h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
...|+++.|++ ++.+||+|..+|.|.|||.... +....+.+ |.. .|-+++|+ +..+.+|+.|+
T Consensus 217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~------------k~~~~~~~~h~~-rvg~laW~--~~~lssGsr~~ 280 (484)
T KOG0305|consen 217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQ------------KKTRTLRGSHAS-RVGSLAWN--SSVLSSGSRDG 280 (484)
T ss_pred CCceEEEEECC-CCCEEEEeecCCeEEEEehhhc------------cccccccCCcCc-eeEEEecc--CceEEEecCCC
Confidence 78899999999 9999999999999999999887 45556777 665 68999997 66799999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|..+|++..... ...+.+|...|..++|++++ .+|++|+
T Consensus 281 ~I~~~dvR~~~~~---------------------------------------~~~~~~H~qeVCgLkws~d~-~~lASGg 320 (484)
T KOG0305|consen 281 KILNHDVRISQHV---------------------------------------VSTLQGHRQEVCGLKWSPDG-NQLASGG 320 (484)
T ss_pred cEEEEEEecchhh---------------------------------------hhhhhcccceeeeeEECCCC-CeeccCC
Confidence 9999999854321 12367899999999999999 8999999
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc--CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~ 376 (496)
.|+.+.|||..... ....+..|...|.+++|+|....+||+|+ .|++|++||..+ +..+..+. -.+.|.
T Consensus 321 nDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~------g~~i~~vd-tgsQVc 391 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT------GARIDSVD-TGSQVC 391 (484)
T ss_pred CccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC------CcEecccc-cCCcee
Confidence 99999999996655 56667799999999999999999999975 589999999998 77887776 477899
Q ss_pred EEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997 377 CVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 455 (496)
Q Consensus 377 ~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s 455 (496)
+|.|++....|+.+-+ .++.|.||++.+. ..+..+.||...|..++|+|++..++ +
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~~RVl~la~SPdg~~i~--------t 448 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHTSRVLYLALSPDGETIV--------T 448 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCcceeEEEEECCCCCEEE--------E
Confidence 9999999866665544 4789999999885 56777899999999999999988876 6
Q ss_pred CCCCCeEEEeecCC
Q 010997 456 TGGGGTLQIWRMSD 469 (496)
Q Consensus 456 gg~Dg~i~iw~~~~ 469 (496)
|+.|.++++|++-+
T Consensus 449 ~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 449 GAADETLRFWNLFD 462 (484)
T ss_pred ecccCcEEeccccC
Confidence 66679999999975
No 57
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3.9e-29 Score=205.28 Aligned_cols=309 Identities=19% Similarity=0.284 Sum_probs=229.6
Q ss_pred CcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCce--EEecCCCCcceeeeec
Q 010997 128 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL--ILTGHQDNAEFALAMC 205 (496)
Q Consensus 128 ~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~l~~h~~~~v~~l~~~ 205 (496)
.+.+..+.++.-..+|.+++|+| .+.+.|.|++..+.+|-..........-.......|.. .-..|..+.|+|.+|+
T Consensus 20 k~~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred ccceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 34567778888899999999999 88899999999999987654432211100001111121 2223444479999999
Q ss_pred CCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCc------------eeccCCCCCCCCCCCCCCCCcCCeee
Q 010997 206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS------------IIKQSPKPGDGNDKAADGPSVGPRGI 273 (496)
Q Consensus 206 p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (496)
|+|.+|++|+.|++|++.-++...+.............+... .+......++..+.+.+...+...+.
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 999999999999999998877655543333222222222222 23333344555666677788889999
Q ss_pred eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec--cC-----CCCeEEEEecCCCCcEEEEEcCCC
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AH-----DADLHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~-----~~~v~~i~~sp~~~~~l~sgs~dg 346 (496)
+.+|.+.|.++- +-++ .+|++|+.|.+|++||+|-.. ++.++. -| .+.|.+++..| .+.+|++|-.|.
T Consensus 179 ~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~ds 253 (350)
T KOG0641|consen 179 LSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADS 253 (350)
T ss_pred ecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCC
Confidence 999999998873 3344 799999999999999999876 333321 12 36799999999 999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (496)
...+||+|- ++++..+..|...|.++.|+|...++| +++.|..|++-|+...- ...-.+...
T Consensus 254 sc~lydirg------~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgdl-----------a~el~~~vv 315 (350)
T KOG0641|consen 254 SCMLYDIRG------GRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGDL-----------AHELPIMVV 315 (350)
T ss_pred ceEEEEeeC------CceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccch-----------hhcCceEEE
Confidence 999999998 899999999999999999999988765 99999999999997631 111234556
Q ss_pred cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
..|.+.+..+.|+|++-.++ +.+.|.++.+|-+.
T Consensus 316 ~ehkdk~i~~rwh~~d~sfi--------sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFI--------SSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceee--------eccCcceEEEeccC
Confidence 78999999999999876655 55667999999775
No 58
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.4e-30 Score=252.33 Aligned_cols=258 Identities=17% Similarity=0.248 Sum_probs=188.0
Q ss_pred EEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCc
Q 010997 158 THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDP 236 (496)
Q Consensus 158 t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 236 (496)
+|+.+|.|++|+.... .+...+.+|.+ .|.+++|+|+ +.+|+||+.||+|+|||+.+......
T Consensus 49 gGG~~gvI~L~~~~r~------------~~v~~L~gH~~-~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--- 112 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK------------PPVIKLKGHTS-SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--- 112 (568)
T ss_pred CCCceeEEEeeecCCC------------ceEEEEcCCCC-CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---
Confidence 3667889999998765 56678899987 7999999997 78999999999999999975321000
Q ss_pred cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccce
Q 010997 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 316 (496)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 316 (496)
....++..+.+|...|.+++|+|++..+|++++.|++|+|||++++. ..
T Consensus 113 -----------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~ 161 (568)
T PTZ00420 113 -----------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RA 161 (568)
T ss_pred -----------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EE
Confidence 00123456788999999999999986677899999999999999887 33
Q ss_pred eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE-----EEcCCCCCEEEEE
Q 010997 317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV-----QWSPDKSSVFGSS 391 (496)
Q Consensus 317 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l-----~~sp~~~~llas~ 391 (496)
..+ .|...|.+++|+| ++.+|++++.|+.|+|||+++ +..+.++.+|.+.+.+. .|++++.+|+ ++
T Consensus 162 ~~i-~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il-Tt 232 (568)
T PTZ00420 162 FQI-NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL-ST 232 (568)
T ss_pred EEE-ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC------CcEEEEEecccCCceeEEEEeeeEcCCCCEEE-EE
Confidence 444 3667899999999 899999999999999999998 77888999998875443 3458888655 55
Q ss_pred eCC----CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 392 AED----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 392 ~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
+.| +.|+|||++.... +.....+..+.+.+..+ |.++...+++++ +.|++|++|++
T Consensus 233 G~d~~~~R~VkLWDlr~~~~------------pl~~~~ld~~~~~L~p~-~D~~tg~l~lsG-------kGD~tIr~~e~ 292 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTS------------ALVTMSIDNASAPLIPH-YDESTGLIYLIG-------KGDGNCRYYQH 292 (568)
T ss_pred EcCCCCccEEEEEECCCCCC------------ceEEEEecCCccceEEe-eeCCCCCEEEEE-------ECCCeEEEEEc
Confidence 545 4799999986421 12223344444444433 334445556644 44599999999
Q ss_pred CCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 468 SDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 468 ~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
... ....+.+.. +..++.+++|.|
T Consensus 293 ~~~----~~~~l~~~~-s~~p~~g~~f~P 316 (568)
T PTZ00420 293 SLG----SIRKVNEYK-SCSPFRSFGFLP 316 (568)
T ss_pred cCC----cEEeecccc-cCCCccceEEcc
Confidence 732 112233333 556777888877
No 59
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=8.4e-30 Score=233.07 Aligned_cols=282 Identities=17% Similarity=0.284 Sum_probs=219.8
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|...++-.+|+| .|.++|+|...|.|+|||...... .....++.-.+ +|..|+|++++++|+..
T Consensus 54 iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~h----------iLKnef~v~aG-~I~Di~Wd~ds~RI~av 121 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEH----------ILKNEFQVLAG-PIKDISWDFDSKRIAAV 121 (603)
T ss_pred eeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcce----------eeeeeeeeccc-ccccceeCCCCcEEEEE
Confidence 4457999999999999 799999999999999999876421 11123344444 78999999999988877
Q ss_pred cC--C--CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 215 GK--D--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 215 ~~--D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+. + |.+.+||.-+ .+..+.+|...|+++.|-|..
T Consensus 122 GEGrerfg~~F~~DSG~------------------------------------------SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGN------------------------------------------SVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred ecCccceeEEEEecCCC------------------------------------------ccceeeccceeEeeeeccCCC
Confidence 63 2 3566676532 125688999999999999999
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 369 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~- 369 (496)
+..++||++|++|.+|+=.-.+ ....+..|..-|+|+.|+| ++..||+++.||.|.+||-.+ +..+..+.
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt------ge~vg~l~~ 230 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT------GEKVGELED 230 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCee--eeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC------ccEEEEecC
Confidence 9999999999999999854444 4556778999999999999 899999999999999999998 88888887
Q ss_pred --cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCC--C--------------------------CCCCC
Q 010997 370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP--R--------------------------TTNYP 419 (496)
Q Consensus 370 --~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~--~--------------------------~~~~~ 419 (496)
+|++.|.+++|+||+.. |+|++.|.+++|||+.......+..- . -....
T Consensus 231 ~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 231 SDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred CCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC
Confidence 89999999999999997 56999999999999987432211100 0 00011
Q ss_pred CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEecc
Q 010997 420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTS 494 (496)
Q Consensus 420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~ 494 (496)
...+....||...|+++..+|++.+++ ||+.||.|.-|+.. .+..-+-. ++|...|.+++-
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~--------SgsyDG~I~~W~~~------~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIY--------SGSYDGHINSWDSG------SGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEE--------eeccCceEEEEecC------CccccccccccccceEEEEee
Confidence 225567789999999999999997776 77777999999998 33322221 567777776653
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-30 Score=250.20 Aligned_cols=252 Identities=20% Similarity=0.316 Sum_probs=195.1
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCc--------------------------------cc-------
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--------------------------------HA------- 178 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~--------------------------------~~------- 178 (496)
+|.|.|+++.|++ +|+|||+||.||.|+||.+...+.. ..
T Consensus 265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 7999999999999 9999999999999999998761000 00
Q ss_pred ---------cCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCcee
Q 010997 179 ---------VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 249 (496)
Q Consensus 179 ---------~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (496)
.......+|+..+.||.+ .|..|.|+.+ ++|+|++.|++|+||++....+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C------------------- 402 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC------------------- 402 (712)
T ss_pred CCccccCCCccccccccchhhhhccch-hheecccccC-CeeEeccccccEEeecCCCcce-------------------
Confidence 000123377888999999 6899999954 5899999999999999975443
Q ss_pred ccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEE
Q 010997 250 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV 329 (496)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i 329 (496)
.....|.+-|+||+|+|-+.++|++|+-||.|+||++...+ +..- ..-..-|+++
T Consensus 403 ----------------------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W-~Dl~~lITAv 457 (712)
T KOG0283|consen 403 ----------------------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDW-NDLRDLITAV 457 (712)
T ss_pred ----------------------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEee-hhhhhhheeE
Confidence 33456999999999999888999999999999999998776 3333 3444889999
Q ss_pred EecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---------cCCCCEEEEEEcCCCCC-EEEEEeCCCcEEE
Q 010997 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPDKSS-VFGSSAEDGLLNI 399 (496)
Q Consensus 330 ~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---------~h~~~i~~l~~sp~~~~-llas~~~dg~i~i 399 (496)
+|.| +|++.++|+.+|.+++|+...+ +....+. .|. .|+.++|.|.... +| ..+.|..|+|
T Consensus 458 cy~P-dGk~avIGt~~G~C~fY~t~~l------k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vL-VTSnDSrIRI 528 (712)
T KOG0283|consen 458 CYSP-DGKGAVIGTFNGYCRFYDTEGL------KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVL-VTSNDSRIRI 528 (712)
T ss_pred Eecc-CCceEEEEEeccEEEEEEccCC------eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEE-EecCCCceEE
Confidence 9999 8999999999999999999873 3322221 123 7999999986654 55 6667999999
Q ss_pred EECCCCCcccCCCCCCCCCCCeeEEEecCCCC--CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 400 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 400 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
||++.. .++..+.|+.. .=....|+.+|.+++ +|+.|..|+||++.
T Consensus 529 ~d~~~~---------------~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV--------s~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 529 YDGRDK---------------DLVHKFKGFRNTSSQISASFSSDGKHIV--------SASEDSWVYIWKND 576 (712)
T ss_pred Eeccch---------------hhhhhhcccccCCcceeeeEccCCCEEE--------EeecCceEEEEeCC
Confidence 999663 33444555433 234568889888766 44456999999985
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-30 Score=250.00 Aligned_cols=235 Identities=20% Similarity=0.345 Sum_probs=197.8
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
+.++.+|.|+|..+.|+| ...++++|++|-.|+||++... +++.++.||-+ -|..+.|++.-.+|+
T Consensus 44 i~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r------------rclftL~GHlD-YVRt~~FHheyPWIl 109 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR------------RCLFTLLGHLD-YVRTVFFHHEYPWIL 109 (1202)
T ss_pred HhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc------------eehhhhccccc-eeEEeeccCCCceEE
Confidence 345568999999999999 7779999999999999999988 88889999999 799999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
|+|.|.+|+||+..+..+ +..+.||..-|.|.+|+|.. .
T Consensus 110 SASDDQTIrIWNwqsr~~----------------------------------------iavltGHnHYVMcAqFhptE-D 148 (1202)
T KOG0292|consen 110 SASDDQTIRIWNWQSRKC----------------------------------------IAVLTGHNHYVMCAQFHPTE-D 148 (1202)
T ss_pred EccCCCeEEEEeccCCce----------------------------------------EEEEecCceEEEeeccCCcc-c
Confidence 999999999999986544 47899999999999999987 6
Q ss_pred eEEEEcCCCeEEEEEccCCC---------------------------ccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 293 EFCSVGDDSCLILWDARVGT---------------------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
+++++|-|.+|++||+..-+ ......+.+|...|+-++|+| .-.+|++|+.|
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DD 227 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADD 227 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCc
Confidence 89999999999999985321 012345678999999999999 88999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
..|++|.+...+ .-.+.+..+|.+.|.++-|+|... ++.|.|+|+.|+|||+.+. ..+.+
T Consensus 228 RqVKlWrmnetK----aWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR---------------t~v~t 287 (1202)
T KOG0292|consen 228 RQVKLWRMNETK----AWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR---------------TSVQT 287 (1202)
T ss_pred ceeeEEEecccc----ceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc---------------cceee
Confidence 999999998743 345677889999999999999888 5569999999999999885 23333
Q ss_pred ecCCCCCcceEEecCCCC
Q 010997 426 HAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 426 ~~~h~~~V~~~~~~p~~~ 443 (496)
+..-.+.-+.++-+|..+
T Consensus 288 frrendRFW~laahP~lN 305 (1202)
T KOG0292|consen 288 FRRENDRFWILAAHPELN 305 (1202)
T ss_pred eeccCCeEEEEEecCCcc
Confidence 333345566666666543
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.2e-30 Score=214.38 Aligned_cols=277 Identities=14% Similarity=0.219 Sum_probs=221.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
+.+.+|..+++.|+|.. +|++|.+++.|.++.||-..++ ..+.++.||++ +|+|++.+.+.++|++
T Consensus 4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nG------------erlGty~GHtG-avW~~Did~~s~~liT 69 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNG------------ERLGTYDGHTG-AVWCCDIDWDSKHLIT 69 (327)
T ss_pred cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCC------------ceeeeecCCCc-eEEEEEecCCcceeee
Confidence 34568999999999999 9999999999999999998777 56778999998 7999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.|.++++||+++++.... + ....+|..+.|++++ ++
T Consensus 70 GSAD~t~kLWDv~tGk~la~----------------------------------------~-k~~~~Vk~~~F~~~g-n~ 107 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLAT----------------------------------------W-KTNSPVKRVDFSFGG-NL 107 (327)
T ss_pred ccccceeEEEEcCCCcEEEE----------------------------------------e-ecCCeeEEEeeccCC-cE
Confidence 99999999999998765322 2 235689999999998 55
Q ss_pred EEEEc-----CCCeEEEEEccCCC-----ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC-
Q 010997 294 FCSVG-----DDSCLILWDARVGT-----SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG- 362 (496)
Q Consensus 294 l~s~~-----~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~- 362 (496)
++.+. ..+.|.++|++... ..+......+.+.++.+.|.| .+.+|++|..||.|.+||+++ +
T Consensus 108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~------g~ 180 (327)
T KOG0643|consen 108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDART------GK 180 (327)
T ss_pred EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEccc------Cc
Confidence 55553 34789999998432 113444557789999999999 899999999999999999998 4
Q ss_pred CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCC
Q 010997 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 442 (496)
Q Consensus 363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~ 442 (496)
..+...+.|...|+.++++|+..+ |++++.|.+-++||+.+. +++.... -..+|++.+++|..
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl---------------~v~Kty~-te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTL---------------EVLKTYT-TERPVNTAAISPLL 243 (327)
T ss_pred eeeechhhhccccccccccCCcce-EEecccCccceeeeccce---------------eeEEEee-ecccccceeccccc
Confidence 456666889999999999999985 679999999999999884 3333333 34589999999988
Q ss_pred CcEEEEecCCCC----CCCCCC--eEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 443 PWTVVSVSDDCD----STGGGG--TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 443 ~~l~~s~s~d~~----sgg~Dg--~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
..++..++.+.- |....| .-++|++- ..+.+..+++|-+||++|||||
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i------~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLI------FEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHH------HHHHhccccccccCcceeEECC
Confidence 888876555421 111111 22344444 4678889999999999999999
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=225.00 Aligned_cols=277 Identities=15% Similarity=0.258 Sum_probs=229.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
...++..+.+-|.+|+| ++++|++|+.||.|.|||..++.....+ ..+..-.+.-+.+ +|.|+.|+.|...|++
T Consensus 207 ~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDL----kYQAqd~fMMmd~-aVlci~FSRDsEMlAs 280 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDL----KYQAQDNFMMMDD-AVLCISFSRDSEMLAS 280 (508)
T ss_pred heecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhh----hhhhhcceeeccc-ceEEEeecccHHHhhc
Confidence 34567888899999999 9999999999999999999988543322 1122334555666 7999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCc
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~ 292 (496)
|+.||.|++|.++++.+. +.|. .|+..|+++.|+.++ .
T Consensus 281 GsqDGkIKvWri~tG~Cl----------------------------------------RrFdrAHtkGvt~l~FSrD~-S 319 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCL----------------------------------------RRFDRAHTKGVTCLSFSRDN-S 319 (508)
T ss_pred cCcCCcEEEEEEecchHH----------------------------------------HHhhhhhccCeeEEEEccCc-c
Confidence 999999999999987764 3333 799999999999999 6
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc--
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-- 370 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 370 (496)
.+++++.|.++++.-+.+++ ++..+.+|.+.|+...|.+ +|..+++++.||+|++|+..+ ..++.+|+.
T Consensus 320 qiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Kt------teC~~Tfk~~~ 390 (508)
T KOG0275|consen 320 QILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKT------TECLSTFKPLG 390 (508)
T ss_pred hhhcccccceEEEeccccch--hHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcc------hhhhhhccCCC
Confidence 79999999999999999998 7888899999999999999 999999999999999999998 788888864
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec-C--CCCCcceEEecCCCCcEEE
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G--HRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~--h~~~V~~~~~~p~~~~l~~ 447 (496)
...+|.++-.-|.++--++.+...++|.|-++.. +.+..+. | ..+...++..+|.|.|+.
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----------------QvVrsfsSGkREgGdFi~~~lSpkGewiY- 453 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----------------QVVRSFSSGKREGGDFINAILSPKGEWIY- 453 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----------------eEEeeeccCCccCCceEEEEecCCCcEEE-
Confidence 4567899998887766677888889999999876 2333322 1 234566778999999977
Q ss_pred EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.|.|+.++.|.+. +|.+..++.-|..-|..++-||
T Consensus 454 -------cigED~vlYCF~~~------sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 454 -------CIGEDGVLYCFSVL------SGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred -------EEccCcEEEEEEee------cCceeeeeecccccccccccCc
Confidence 55667999999998 7888888888988888888777
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.9e-29 Score=237.67 Aligned_cols=271 Identities=17% Similarity=0.315 Sum_probs=226.0
Q ss_pred cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
...+.+.+|...|..++++. +..++++|+. ++|+||+..+. +++.++..- .+.+..|.|.+++
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga~-~SikiWn~~t~------------kciRTi~~~---y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSS-DSILLASGAG-ESIKIWNRDTL------------KCIRTITCG---YILASKFVPGDRY 426 (888)
T ss_pred cceeeeccchhheeEEEeec-CceeeeecCC-CcEEEEEccCc------------ceeEEeccc---cEEEEEecCCCce
Confidence 34567789999999999998 7777777765 59999999988 566666543 5789999999999
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+++|...|.+.++|+..... +.....|.+.|.+++.+|++
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l----------------------------------------~Eti~AHdgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASL----------------------------------------VETIRAHDGAIWSISLSPDN 466 (888)
T ss_pred EEEeccCCceEEEEeehhhh----------------------------------------hhhhhccccceeeeeecCCC
Confidence 99999999999999975322 24456899999999999999
Q ss_pred CceEEEEcCCCeEEEEEccCCCc-----cc-ee----eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 291 AQEFCSVGDDSCLILWDARVGTS-----PV-IK----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~-----~~-~~----~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
..+++||.|.+|++||..-... .. +. ....-+..|.|+.+|| ++.+||++=.|.+|++|-+.+
T Consensus 467 -~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt----- 539 (888)
T KOG0306|consen 467 -KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT----- 539 (888)
T ss_pred -CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-----
Confidence 7899999999999999753221 00 10 1113467899999999 999999999999999999999
Q ss_pred CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
.+...++-||.-||.|+..||++. +++|||.|..|+||-+.-+ .+-..+.+|.+.|+++.|.|
T Consensus 540 -lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFG---------------DCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 540 -LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFG---------------DCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred -eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccc---------------hhhhhhhcccCceeEEEEcc
Confidence 567888999999999999999998 6789999999999999885 33445678999999999999
Q ss_pred CCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 441 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.... +. |+|.|+.|+-||-. .-+.++.+.+|...|+++|.+|
T Consensus 603 ~~~~-FF-------t~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 603 KTHL-FF-------TCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred ccee-EE-------EecCcceEEeechh------hhhhheeeccchheeeeeEEcC
Confidence 6554 44 55666999999988 6789999999999999999887
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=218.06 Aligned_cols=281 Identities=18% Similarity=0.251 Sum_probs=211.7
Q ss_pred cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccc----cCC-CCCC-CCceEEecCCCCcceeeee
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----VLG-ATNS-RPDLILTGHQDNAEFALAM 204 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~----~~~-~~~~-~~~~~l~~h~~~~v~~l~~ 204 (496)
.+..-...|++++.+.+|+| +|.++|||+.|-+|+|.|++....+.. ..+ .++. ..+.+|-.|.+ .|+++.|
T Consensus 103 yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~F 180 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDF 180 (430)
T ss_pred cceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceee
Confidence 34445668999999999999 999999999999999999984322111 111 1122 34567888988 7999999
Q ss_pred cCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEE
Q 010997 205 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (496)
Q Consensus 205 ~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (496)
+|....|++|+.|++|+++|+........ ........+|.++
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA--------------------------------------~K~~qd~~~vrsi 222 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRA--------------------------------------FKVFQDTEPVRSI 222 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHH--------------------------------------HHHhhccceeeeE
Confidence 99999999999999999999975322110 1112235689999
Q ss_pred EEccCCCceEEEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 363 (496)
.|+|.| .+++.|.+-.++++||+.+.+.-. ......|.+.|+++.+++ .+.+.++|+.||.|+|||--+ .+
T Consensus 223 SfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS------~r 294 (430)
T KOG0640|consen 223 SFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS------NR 294 (430)
T ss_pred eecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeecccc------HH
Confidence 999999 789999999999999999876211 112357999999999999 999999999999999999887 78
Q ss_pred CceEec-cCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC-----------------C--------
Q 010997 364 PINKFE-GHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-----------------T-------- 416 (496)
Q Consensus 364 ~~~~~~-~h~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~-------- 416 (496)
++.++. .|. ..|.+..|..+++++| +.+.|..|++|.+.++...+.-..+. +
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa 373 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA 373 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc
Confidence 888884 454 4699999999999876 88899999999998753322111100 0
Q ss_pred C---------CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 417 N---------YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 417 ~---------~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
. .....-.-..||.+.+..+.-+|.++.++ |+|.|-.+++|--+
T Consensus 374 s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm--------TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 374 SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM--------TCSDDFRARFWYRR 426 (430)
T ss_pred cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee--------eecccceeeeeeec
Confidence 0 00001112358999999999999998765 55556999999654
No 66
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=218.23 Aligned_cols=309 Identities=16% Similarity=0.263 Sum_probs=228.3
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+.+|.+.|+.++... ...++.+++.|-+.+||.++++ +++..+.||.+ .|+++.|++.+.+++++
T Consensus 143 e~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg------------~CL~~Y~GH~G-SVNsikfh~s~~L~lTa 208 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESG------------ACLATYTGHTG-SVNSIKFHNSGLLLLTA 208 (481)
T ss_pred hhcccccceeeehhhc-CCcceeecccccceeEEeeccc------------cceeeeccccc-ceeeEEeccccceEEEc
Confidence 4568999999999877 5569999999999999999999 88899999999 69999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCC--CCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP--KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+.|++-.||...-.-.... +.......+......... ...++........-.-|+..+.+|...|.+..|-..+ .
T Consensus 209 SGD~taHIW~~av~~~vP~--~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~ 285 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPS--NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q 285 (481)
T ss_pred cCCcchHHHHHhhcCcCCC--CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence 9999999997431100000 000000000000000000 0011111111112234667889999999999998877 7
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
.+++++.|.+-.+||++++. .+..+.+|....+.++-+| ...++++++.|.+.++||+|.. -..+..|++|.
T Consensus 286 Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHt 357 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHT 357 (481)
T ss_pred eeeeeeccccceeeeeccCc--eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----cceeeeecccc
Confidence 89999999999999999998 7888899999999999999 8999999999999999999952 46688999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
..|+++.|.-+.+ +++|++|.+|+|||++..... +.... -.++++.++.+..+ -+||---+
T Consensus 358 dtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsp--------------lATIR-tdS~~NRvavs~g~-~iIAiPhD- 418 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSP--------------LATIR-TDSPANRVAVSKGH-PIIAIPHD- 418 (481)
T ss_pred cceeEEEEecCCc--eeecCCCceEEEeeeccccCc--------------ceeee-cCCccceeEeecCC-ceEEeccC-
Confidence 9999999998876 469999999999999986321 11222 24578888888744 34544333
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
+..|++||++..... .-+-..-++|..-|.++||.
T Consensus 419 ------NRqvRlfDlnG~Rla--RlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 419 ------NRQVRLFDLNGNRLA--RLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred ------CceEEEEecCCCccc--cCCcccccccceeeeeeecc
Confidence 489999999843111 01112336899999999995
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-28 Score=212.35 Aligned_cols=264 Identities=16% Similarity=0.283 Sum_probs=211.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC--
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-- 216 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-- 216 (496)
-.+.|+++.|++ +|.+|++++.|-+++|||..++ +...++..+.- .+..++|....+.++.++.
T Consensus 13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g------------~~~~ti~skky-G~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSG------------KQVKTINSKKY-GVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCC------------ceeeEeecccc-cccEEEEecCCceEEEccCCC
Confidence 467899999999 8899999999999999999988 55666666655 4678888777776776665
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
|.+|+.-++.+.+ .++.|.||...|++++.+|-+ ..|++
T Consensus 79 d~tIryLsl~dNk----------------------------------------ylRYF~GH~~~V~sL~~sP~~-d~FlS 117 (311)
T KOG1446|consen 79 DDTIRYLSLHDNK----------------------------------------YLRYFPGHKKRVNSLSVSPKD-DTFLS 117 (311)
T ss_pred CCceEEEEeecCc----------------------------------------eEEEcCCCCceEEEEEecCCC-CeEEe
Confidence 8899999987543 358899999999999999998 78999
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---CCC
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSA 373 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---h~~ 373 (496)
++.|++|++||+|..+.+... +...-..++|+| .|-++|++.....|+|||+|+.. ..|..++.- ...
T Consensus 118 ~S~D~tvrLWDlR~~~cqg~l----~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ 188 (311)
T KOG1446|consen 118 SSLDKTVRLWDLRVKKCQGLL----NLSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEA 188 (311)
T ss_pred cccCCeEEeeEecCCCCceEE----ecCCCcceeECC-CCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCcc
Confidence 999999999999987733222 223345689999 89999999988899999999986 456666643 367
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc---ceEEecCCCCcEEEEec
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV---VDFHWNASDPWTVVSVS 450 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V---~~~~~~p~~~~l~~s~s 450 (496)
..+.|.|||+|++|| .+...+.+++.|.-.+ .++..+.++...- .+..|.|++.+++
T Consensus 189 ew~~l~FS~dGK~iL-lsT~~s~~~~lDAf~G---------------~~~~tfs~~~~~~~~~~~a~ftPds~Fvl---- 248 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSIL-LSTNASFIYLLDAFDG---------------TVKSTFSGYPNAGNLPLSATFTPDSKFVL---- 248 (311)
T ss_pred ceeeeEEcCCCCEEE-EEeCCCcEEEEEccCC---------------cEeeeEeeccCCCCcceeEEECCCCcEEE----
Confidence 889999999999877 5556889999998875 3444444444322 5788999988766
Q ss_pred CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh-ccceEEEeccCC
Q 010997 451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSKP 496 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~sP 496 (496)
+|+.||+|.+|++. ++..+..+.+ +.+++.++.|.|
T Consensus 249 ----~gs~dg~i~vw~~~------tg~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 249 ----SGSDDGTIHVWNLE------TGKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred ----EecCCCcEEEEEcC------CCcEeeEecCCCCCCccccccCC
Confidence 55667999999998 7888888888 688899999988
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=9.1e-30 Score=232.22 Aligned_cols=305 Identities=18% Similarity=0.218 Sum_probs=224.4
Q ss_pred CcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997 128 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (496)
Q Consensus 128 ~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~ 207 (496)
.|.-..+++.+|+..|.++++.| .|-.|++|+.|-.|++||+......... .+.+.-..+| .|.++.|++.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~-----fr~l~P~E~h---~i~sl~ys~T 225 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRS-----FRQLQPCETH---QINSLQYSVT 225 (641)
T ss_pred CCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchh-----hhccCccccc---ccceeeecCC
Confidence 34555678889999999999999 8889999999999999999887433211 1222223344 5789999999
Q ss_pred CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
|..|+..+.....+|+|-......... .+.. ...-+..-.+|...++|.+|+
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~--------KGDQ--------------------YI~Dm~nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFS--------KGDQ--------------------YIRDMYNTKGHIAELTCGCWH 277 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeee--------ccch--------------------hhhhhhccCCceeeeeccccc
Confidence 998888888889999997643211000 0000 001113346899999999999
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccc--eee--eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPV--IKV--EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~--~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 363 (496)
|.....|+|++.||+++|||+...+... +.. ..+..-.++.++|+| ++.+||+|..||.|.+||.++... ..
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v---~p 353 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV---RP 353 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc---cc
Confidence 9998899999999999999998765321 111 123445789999999 999999999999999999877542 12
Q ss_pred CceEeccCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC--CCCCcceEEec
Q 010997 364 PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWN 439 (496)
Q Consensus 364 ~~~~~~~h~~--~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~ 439 (496)
....-..|.. .|++|.||++|++| ++-+.|+++++||++..++.+. ...| ..-+-++++|+
T Consensus 354 ~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~--------------~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 354 VMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLN--------------VRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeeccccccchh--------------hhcCCCccCCCCccccC
Confidence 2334467877 89999999999964 6999999999999998755432 2222 12245789999
Q ss_pred CCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 440 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 440 p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|+...++...|-- -+..-|.+.+||.. +-+.+.++.-....|..+.|||
T Consensus 419 Pd~kli~TGtS~~--~~~~~g~L~f~d~~------t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 419 PDDKLILTGTSAP--NGMTAGTLFFFDRM------TLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred CCceEEEeccccc--CCCCCceEEEEecc------ceeeEEEecCCCceEEEEeecc
Confidence 9877555433333 45566799999988 6677777777788999999998
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.4e-29 Score=236.70 Aligned_cols=261 Identities=21% Similarity=0.332 Sum_probs=215.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.+++++-. -+.+..|.| +++++++|...|.+.|||+... ..+-+.+.|.+ +++.++.+||+..++
T Consensus 406 ciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~------------~l~Eti~AHdg-aIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 406 CIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA------------SLVETIRAHDG-AIWSISLSPDNKGFV 470 (888)
T ss_pred eeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh------------hhhhhhhcccc-ceeeeeecCCCCceE
Confidence 34444444 788999999 8889999999999999999987 44556778988 799999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+||.|.+|++||..-......... . .......+++ .-...|.|+.++|++ .
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~------------------------k---~lsl~~~rtL-el~ddvL~v~~Spdg-k 521 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQK------------------------K---VLSLKHTRTL-ELEDDVLCVSVSPDG-K 521 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccc------------------------e---eeeeccceEE-eccccEEEEEEcCCC-c
Confidence 999999999999863211000000 0 0000111222 235689999999999 8
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
+|+.+--|.+|+||-+.+-+ ....+.+|.-+|.|+..+| ++.+++|||.|..|++|-+.- |.+..++-+|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlK--FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF------GDCHKS~fAHd 592 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLK--FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF------GDCHKSFFAHD 592 (888)
T ss_pred EEEEEeccCeEEEEEeccee--eeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc------chhhhhhhccc
Confidence 99999999999999999887 6677889999999999999 999999999999999999998 88999999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
..|.++.|-|... +|.++|.|+.|+-||-.+. ..+..+.+|...|++++.+|+|.+++
T Consensus 593 DSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kF---------------e~iq~L~~H~~ev~cLav~~~G~~vv------ 650 (888)
T KOG0306|consen 593 DSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKF---------------EEIQKLDGHHSEVWCLAVSPNGSFVV------ 650 (888)
T ss_pred CceeEEEEcccce-eEEEecCcceEEeechhhh---------------hhheeeccchheeeeeEEcCCCCeEE------
Confidence 9999999999766 5669999999999998875 56777899999999999999998876
Q ss_pred CCCCCCCCeEEEeecCCC
Q 010997 453 CDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~ 470 (496)
|+|.|.+|++|...+.
T Consensus 651 --s~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 651 --SSSHDKSIRLWERTDE 666 (888)
T ss_pred --eccCCceeEeeeccCc
Confidence 6677799999998763
No 70
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=211.00 Aligned_cols=258 Identities=21% Similarity=0.325 Sum_probs=204.1
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEec
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG 215 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~ 215 (496)
.|.+.|..+...= -++.|||++.|++|+||.+++.. +.+++.+|.||.+ +|+-++|.. .|.+||||+
T Consensus 9 ~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~---------~s~ll~~L~Gh~G-PVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 9 QHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNG---------QSKLLAELTGHSG-PVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCC---------CceeeeEecCCCC-CeeEEeecccccCcEeeEee
Confidence 6888888776544 78899999999999999998872 2367889999998 899999975 599999999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-CceE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEF 294 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l 294 (496)
.||.|.||.-+++.- .....+..|...|++++|.|.+ +-+|
T Consensus 78 YDgkVIiWke~~g~w--------------------------------------~k~~e~~~h~~SVNsV~wapheygl~L 119 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRW--------------------------------------TKAYEHAAHSASVNSVAWAPHEYGLLL 119 (299)
T ss_pred cCceEEEEecCCCch--------------------------------------hhhhhhhhhcccceeecccccccceEE
Confidence 999999999876522 2224567899999999999865 2478
Q ss_pred EEEcCCCeEEEEEccCC-CccceeeeccCCCCeEEEEecCCC--C-----------cEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 295 CSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLD--D-----------NLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~i~~sp~~--~-----------~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
++++.||.|.|.+.+.. ..........|.-.|++++|.|.. + ..|++|+.|..|+||+..+..
T Consensus 120 acasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--- 196 (299)
T KOG1332|consen 120 ACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--- 196 (299)
T ss_pred EEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---
Confidence 89999999999999876 333445567899999999999831 2 469999999999999998732
Q ss_pred CCCCceEeccCCCCEEEEEEcCCC---CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997 361 VGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 437 (496)
Q Consensus 361 ~~~~~~~~~~h~~~i~~l~~sp~~---~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 437 (496)
...-.++.+|.+-|..++|.|.- ..-+|++++||.|.||..+...++ ....++ ......+..+.
T Consensus 197 -w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~---------wk~tll---~~f~~~~w~vS 263 (299)
T KOG1332|consen 197 -WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP---------WKKTLL---EEFPDVVWRVS 263 (299)
T ss_pred -hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc---------cccccc---ccCCcceEEEE
Confidence 45556689999999999999964 335799999999999998743221 112222 23567899999
Q ss_pred ecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 438 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 438 ~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
|+..|..|.++ +.|+.|.+|.-+
T Consensus 264 WS~sGn~LaVs--------~GdNkvtlwke~ 286 (299)
T KOG1332|consen 264 WSLSGNILAVS--------GGDNKVTLWKEN 286 (299)
T ss_pred EeccccEEEEe--------cCCcEEEEEEeC
Confidence 99998876644 346899999876
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=9e-29 Score=242.37 Aligned_cols=245 Identities=20% Similarity=0.385 Sum_probs=206.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|.+.|.++++.. .+.+|++|+.|.+++|||..++ .+..++.||.+ .|.++.. ...++++|
T Consensus 244 ~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg------------~C~~~l~gh~s-tv~~~~~--~~~~~~sg 307 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTG------------ECTHSLQGHTS-SVRCLTI--DPFLLVSG 307 (537)
T ss_pred eccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCC------------cEEEEecCCCc-eEEEEEc--cCceEeec
Confidence 3789999999999976 7889999999999999999998 78889999998 6777776 45678899
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.|.+|++|+++++.. +..+.+|.++|.++..+ + .++
T Consensus 308 s~D~tVkVW~v~n~~~----------------------------------------l~l~~~h~~~V~~v~~~--~-~~l 344 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGAC----------------------------------------LNLLRGHTGPVNCVQLD--E-PLL 344 (537)
T ss_pred cCCceEEEEeccCcce----------------------------------------EEEeccccccEEEEEec--C-CEE
Confidence 9999999999985433 46677799999999998 3 689
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC-CCceEeccCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-SPINKFEGHSA 373 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~~~~~~~h~~ 373 (496)
++|+.|++|++||+++.+ ++..+.+|...|.++.+.+ . ..+++|+.|+.|++||+++ . +++.++.+|..
T Consensus 345 vsgs~d~~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~------~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGK--CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRT------KRKCIHTLQGHTS 414 (537)
T ss_pred EEEecCceEEEEEhhhce--eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCc------hhhhhhhhcCCcc
Confidence 999999999999999887 8889999999999999875 3 9999999999999999999 6 79999999999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEEEecCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
-+..+.+.. . +|++++.|+.|++||.... +++..+.+ |...|..+++. ... ++++
T Consensus 415 ~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~---------------~~~~~~~~~~~~~v~~l~~~--~~~-il~s--- 470 (537)
T KOG0274|consen 415 LVSSLLLRD--N-FLVSSSADGTIKLWDAEEG---------------ECLRTLEGRHVGGVSALALG--KEE-ILCS--- 470 (537)
T ss_pred ccccccccc--c-eeEeccccccEEEeecccC---------------ceeeeeccCCcccEEEeecC--cce-EEEE---
Confidence 998877753 3 5679999999999999885 45556666 67889888886 233 4433
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 482 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l 482 (496)
+.||++++||++ .+++...+
T Consensus 471 ----~~~~~~~l~dl~------~~~~~~~l 490 (537)
T KOG0274|consen 471 ----SDDGSVKLWDLR------SGTLIRTL 490 (537)
T ss_pred ----ecCCeeEEEecc------cCchhhhh
Confidence 345999999999 56666655
No 72
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.4e-29 Score=212.61 Aligned_cols=266 Identities=18% Similarity=0.292 Sum_probs=206.4
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
-.+.|.+|+|+|+...++++++.||+||+|+++... ...+ .....|.+ +|.+++|+.+|..+++|+.|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---------~~~~-ka~~~~~~-PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---------QLVP-KAQQSHDG-PVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC---------cccc-hhhhccCC-CeEEEEEccCCceEEeeccCC
Confidence 346799999999888899999999999999998741 0111 23455666 799999999999999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC-ceEEEE
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSV 297 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~ 297 (496)
.+++||+.+++. ..+..|.++|.++.|-+... ..|+||
T Consensus 95 ~~k~wDL~S~Q~-----------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 95 QAKLWDLASGQV-----------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred ceEEEEccCCCe-----------------------------------------eeeeecccceeEEEEecCCCcceeEec
Confidence 999999987643 56778999999999976541 378999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL 376 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~ 376 (496)
|.|++|+.||+|... .+.++ ...+.++++.. -..+++++..+..|.+|++++.. .....+ ..-+-.+.
T Consensus 134 SWDKTlKfWD~R~~~--pv~t~-~LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~-----te~k~~~SpLk~Q~R 202 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSN--PVATL-QLPERVYAADV---LYPMAVVATAERHIAVYNLENPP-----TEFKRIESPLKWQTR 202 (347)
T ss_pred ccccceeecccCCCC--eeeee-eccceeeehhc---cCceeEEEecCCcEEEEEcCCCc-----chhhhhcCcccceee
Confidence 999999999999876 34443 45677888776 35688889999999999998732 111111 12344688
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC---------CcceEEecCCCCcEEE
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---------KVVDFHWNASDPWTVV 447 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~~~~~p~~~~l~~ 447 (496)
+|+..++... +|.|+-+|++-|..+..... ..-|.+..|+. .|++++|+|....++
T Consensus 203 ~va~f~d~~~-~alGsiEGrv~iq~id~~~~-------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv- 267 (347)
T KOG0647|consen 203 CVACFQDKDG-FALGSIEGRVAIQYIDDPNP-------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV- 267 (347)
T ss_pred EEEEEecCCc-eEeeeecceEEEEecCCCCc-------------cCceeEEEeccCCCCCCceEEecceEeecccceEE-
Confidence 9999998885 57999999999999987421 23344444542 578899999776655
Q ss_pred EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
|.|.||++.+||-. ....+.+.+.|..+|++++|+
T Consensus 268 -------TaGsDGtf~FWDkd------ar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 268 -------TAGSDGTFSFWDKD------ARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred -------EecCCceEEEecch------hhhhhhccCcCCCccceeEec
Confidence 66667999999998 677888889999999999986
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.7e-29 Score=208.67 Aligned_cols=268 Identities=17% Similarity=0.327 Sum_probs=217.7
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVL 212 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~ 212 (496)
..+.+|.+.|.+++|.. +|..||+|+.|+++.||+++.... .......+|++ .|-.++|+|. ...|+
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~----------~~~~~~~gh~~-svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRF----------RKELVYRGHTD-SVDQLCWDPKHPDLFA 81 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhh----------hhhhcccCCCc-chhhheeCCCCCcceE
Confidence 45568999999999999 999999999999999999988721 23346788987 5788999886 55899
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+++.|++|++||++.+++. .......+ =.-+.|+|+| .
T Consensus 82 tas~dk~ir~wd~r~~k~~----------------------------------------~~i~~~~e-ni~i~wsp~g-~ 119 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCT----------------------------------------ARIETKGE-NINITWSPDG-E 119 (313)
T ss_pred EecCCceEEEEEeccCcEE----------------------------------------EEeeccCc-ceEEEEcCCC-C
Confidence 9999999999999876543 22222222 2357899999 7
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
+++.++.|..|.+.|.|+.+ ... .......++-++|+- ++++|+.-...|+|.|..... .+++.+++.|.
T Consensus 120 ~~~~~~kdD~it~id~r~~~--~~~-~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsyps------Lkpv~si~AH~ 189 (313)
T KOG1407|consen 120 YIAVGNKDDRITFIDARTYK--IVN-EEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPS------LKPVQSIKAHP 189 (313)
T ss_pred EEEEecCcccEEEEEecccc--eee-hhcccceeeeeeecC-CCCEEEEecCCceEEEEeccc------cccccccccCC
Confidence 89999999999999999877 232 235567789999996 777777777889999999887 68999999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
....|+.|+|+|++ ||+|+.|-.+.+||+... .+...+..+.=+|..++|+.+|++ +||+|+|
T Consensus 190 snCicI~f~p~Gry-fA~GsADAlvSLWD~~EL---------------iC~R~isRldwpVRTlSFS~dg~~-lASaSED 252 (313)
T KOG1407|consen 190 SNCICIEFDPDGRY-FATGSADALVSLWDVDEL---------------ICERCISRLDWPVRTLSFSHDGRM-LASASED 252 (313)
T ss_pred cceEEEEECCCCce-EeeccccceeeccChhHh---------------hhheeeccccCceEEEEeccCcce-eeccCcc
Confidence 99999999999997 799999999999999875 455566777889999999998765 6655555
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
..|-|=++. +|..+.+++ +.++..+|||||
T Consensus 253 -------h~IDIA~ve------tGd~~~eI~-~~~~t~tVAWHP 282 (313)
T KOG1407|consen 253 -------HFIDIAEVE------TGDRVWEIP-CEGPTFTVAWHP 282 (313)
T ss_pred -------ceEEeEecc------cCCeEEEee-ccCCceeEEecC
Confidence 778777776 677777766 788999999998
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.3e-29 Score=205.31 Aligned_cols=220 Identities=23% Similarity=0.352 Sum_probs=193.0
Q ss_pred CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (496)
+....+..|++ +|.++.|+-+|+|.++|+.|++|++|+...+.
T Consensus 8 kr~~~l~~~qg-aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~------------------------------------ 50 (307)
T KOG0316|consen 8 KRLSILDCAQG-AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA------------------------------------ 50 (307)
T ss_pred hhceeeccccc-ceEEEEEccCCCEEEEcCCCceEEeecccccc------------------------------------
Confidence 34557788887 79999999999999999999999999986543
Q ss_pred CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
.++++.+|...|.+++.+.++ ..|++|+.|..|.+||+.+++ ..+.+.+|...|+.+.|+. +...+++|+.|
T Consensus 51 ----liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD 122 (307)
T KOG0316|consen 51 ----LIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVNTVRFNE-ESSVVASGSFD 122 (307)
T ss_pred ----eeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCe--eeeecccccceeeEEEecC-cceEEEecccc
Confidence 358899999999999999988 689999999999999999999 7888999999999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
..+++||.|+.. .+|++.+......|.++..+.. .+++|+.||+++.||++.+ .+...
T Consensus 123 ~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G---------------~l~sD 180 (307)
T KOG0316|consen 123 SSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKG---------------TLSSD 180 (307)
T ss_pred ceeEEEEcccCC----CCccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeecc---------------eeehh
Confidence 999999999866 6889999988999999999754 4569999999999999985 33333
Q ss_pred ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccce
Q 010997 426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH 488 (496)
Q Consensus 426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~ 488 (496)
..| .+|++++|++++...++ ++.|++|++-|-. +++++++.++|.+.
T Consensus 181 y~g--~pit~vs~s~d~nc~La--------~~l~stlrLlDk~------tGklL~sYkGhkn~ 227 (307)
T KOG0316|consen 181 YFG--HPITSVSFSKDGNCSLA--------SSLDSTLRLLDKE------TGKLLKSYKGHKNM 227 (307)
T ss_pred hcC--CcceeEEecCCCCEEEE--------eeccceeeecccc------hhHHHHHhcccccc
Confidence 343 48999999999998884 4557999999998 89999999999875
No 75
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.8e-28 Score=236.53 Aligned_cols=235 Identities=17% Similarity=0.309 Sum_probs=179.9
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEe
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSG 214 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg 214 (496)
+.+|.+.|++++|+|.++++||+|+.||+|+|||+....... ....++..+.+|.. .|.+++|+|++ ++|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-----~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-----NISDPIVHLQGHTK-KVGIVSFHPSAMNVLASA 144 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-----ccCcceEEecCCCC-cEEEEEeCcCCCCEEEEE
Confidence 569999999999999778899999999999999997652111 11246678899987 69999999985 689999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.|++|+|||++++. .+..+.+|...|.+++|+|++ .+|
T Consensus 145 s~DgtVrIWDl~tg~----------------------------------------~~~~l~~h~~~V~sla~spdG-~lL 183 (493)
T PTZ00421 145 GADMVVNVWDVERGK----------------------------------------AVEVIKCHSDQITSLEWNLDG-SLL 183 (493)
T ss_pred eCCCEEEEEECCCCe----------------------------------------EEEEEcCCCCceEEEEEECCC-CEE
Confidence 999999999997542 235677899999999999998 799
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCC-eEEEEecCCCCcEEEEEc----CCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLDDNLILTGS----ADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~i~~sp~~~~~l~sgs----~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
++++.|++|++||+++++ .+..+..|... +..+.|.+ ++..+++++ .|+.|++||+++.. .++....
T Consensus 184 atgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~-----~p~~~~~ 255 (493)
T PTZ00421 184 CTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMA-----SPYSTVD 255 (493)
T ss_pred EEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCC-----CceeEec
Confidence 999999999999999887 55666678754 45778888 666666543 47999999999743 3444444
Q ss_pred cC-CCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCCcceEEecCC
Q 010997 370 GH-SAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNAS 441 (496)
Q Consensus 370 ~h-~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~p~ 441 (496)
.+ ...+....|++++..++ +++ .|+.|++||+... .+++. ...+..++..++|.|.
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~-lggkgDg~Iriwdl~~~---------------~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLY-IGSKGEGNIRCFELMNE---------------RLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred cCCCCceEEEEEcCCCCEEE-EEEeCCCeEEEEEeeCC---------------ceEEEeeccCCCCCcceEeccc
Confidence 33 34566778999998554 555 6999999999874 12222 1234556777888774
No 76
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=242.39 Aligned_cols=240 Identities=23% Similarity=0.473 Sum_probs=200.0
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCCcE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSV 220 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i 220 (496)
.+..++|.....++|||++..|.|.+||+.... ..+.+..|..|.. .++++.|++.. .+|+|||.||+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~---------rnk~l~~f~EH~R-s~~~ldfh~tep~iliSGSQDg~v 158 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI---------RNKLLTVFNEHER-SANKLDFHSTEPNILISGSQDGTV 158 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc---------cchhhhHhhhhcc-ceeeeeeccCCccEEEecCCCceE
Confidence 466788887788999999999999999998741 1255667888988 68999999975 489999999999
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (496)
++||++.... ..++.+....|.+|+|+|..++.|+++.+.
T Consensus 159 K~~DlR~~~S----------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 159 KCWDLRSKKS----------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred EEEeeecccc----------------------------------------cccccccchhhhceeeccCCCceEEEecCC
Confidence 9999985432 245566778999999999888999999999
Q ss_pred CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEE
Q 010997 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 380 (496)
|.+++||+|.... ....+.+|.++|.|+.|+| ++.+||||+.|+.|+|||+.... ..+++++. -..+|.+|.|
T Consensus 199 G~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~----~~~~~tIn-Tiapv~rVkW 271 (839)
T KOG0269|consen 199 GYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR----AKPKHTIN-TIAPVGRVKW 271 (839)
T ss_pred ceEEEeeccCchh-HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC----ccceeEEe-ecceeeeeee
Confidence 9999999999874 4556779999999999999 99999999999999999998743 35556665 3678999999
Q ss_pred cCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 381 SPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 381 sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
-|..++.||+++. |-.|+|||++.. ..+...+..|...++.++|-..+..++.+++.|
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRP--------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRP--------------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccc--------------cccceeeeccCccccceeccCCCceeeEeecCc
Confidence 9999999998876 788999999874 234556778999999999988667777766665
No 77
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-28 Score=219.21 Aligned_cols=262 Identities=21% Similarity=0.368 Sum_probs=202.3
Q ss_pred CCceeEEEecC------CCCcEEEEEeCCCcEEEEeCCCCCCc--cccCCCCC-------CCCceEEecCCCCcceeeee
Q 010997 140 PGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNR--HAVLGATN-------SRPDLILTGHQDNAEFALAM 204 (496)
Q Consensus 140 ~~~V~~l~~~p------~~~~~lat~~~dg~i~iwd~~~~~~~--~~~~~~~~-------~~~~~~l~~h~~~~v~~l~~ 204 (496)
+..-.|++|.. .-++++|.|+.|..|.|||+.-.... ...++... .+......+|++ +|.+|+|
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~ 251 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSW 251 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHh
Confidence 34445666643 24679999999999999998754221 11122100 011122457888 7899999
Q ss_pred cCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997 205 CPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 205 ~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
+.. .+.|||||.|.+|++||+.+++. ..++..|.+.|.+
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p----------------------------------------~~s~~~~~k~Vq~ 291 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKP----------------------------------------KSSITHHGKKVQT 291 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCc----------------------------------------ceehhhcCCceeE
Confidence 886 45899999999999999986543 3667779999999
Q ss_pred EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 363 (496)
+.|+|..+.+|++|+.|++|.+.|.|.... ....-...+.|-.++|+|+....+++++.||+|+-+|+|++ +.
T Consensus 292 l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~ 364 (463)
T KOG0270|consen 292 LEWHPYEPSVLLSGSYDGTVALKDCRDPSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GK 364 (463)
T ss_pred EEecCCCceEEEeccccceEEeeeccCccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CC
Confidence 999999999999999999999999996431 11111346789999999988999999999999999999996 48
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~ 443 (496)
++.+++.|.++|.+|++++.-+.++++++.|+.|++|++.... +.....+.--.+...++++.|+-.
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-------------~~~v~~~~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-------------PKSVKEHSFKLGRLHCFALDPDVA 431 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-------------CcccccccccccceeecccCCCcc
Confidence 9999999999999999999999999999999999999998731 122222222234567888999988
Q ss_pred cEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 444 WTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 444 ~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+++| .||..+.++|||+..
T Consensus 432 ~~la-------~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 432 FTLA-------FGGEKAVLRVWDIFT 450 (463)
T ss_pred eEEE-------ecCccceEEEeeccc
Confidence 8887 555568999999983
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=3.2e-28 Score=219.56 Aligned_cols=227 Identities=22% Similarity=0.420 Sum_probs=194.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCce
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYV 211 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l 211 (496)
.+++.+|.++=..+.|+++..-.|++|+.|+.|++||+....... ....+...+.+|.+ .|..++|++. ..+|
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-----~~~~p~~~~~~h~~-~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED-----KVVDPKTIFSGHED-VVEDVAWHPLHEDLF 243 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC-----ccccceEEeecCCc-ceehhhccccchhhh
Confidence 457889999889999999888899999999999999998774321 12367788999998 7999999996 4588
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
++++.|+.+.|||+++. ..++.....+|.++|+|++|+|.+.
T Consensus 244 ~sv~dd~~L~iwD~R~~--------------------------------------~~~~~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSN--------------------------------------TSKPSHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred eeecCCCeEEEEEcCCC--------------------------------------CCCCcccccccCCceeEEEeCCCCC
Confidence 99999999999999852 1122355678999999999999998
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC--------CCCC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--------GVGS 363 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~--------~~~~ 363 (496)
.+|||||.|++|.+||+|+... ....+.+|...|.+|.|+|+....||+++.|+.+.+||+...... +...
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred ceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence 9999999999999999999886 466778999999999999988999999999999999999875422 1234
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
++..-.||...|..+.|+|+.+++++|.++|+.+.||.+..
T Consensus 365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 56777899999999999999999999999999999999975
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.7e-29 Score=210.46 Aligned_cols=246 Identities=20% Similarity=0.326 Sum_probs=202.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
+-.+.+|.|+|+...... +....|+++.|-+.+|||.-++ ..+..+. |.. .|.+++|+.|.++|+
T Consensus 52 igtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tg------------delhsf~-hkh-ivk~~af~~ds~~ll 116 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTG------------DELHSFE-HKH-IVKAVAFSQDSNYLL 116 (334)
T ss_pred EEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhh------------hhhhhhh-hhh-eeeeEEecccchhhh
Confidence 346679999999999877 7778899999999999999888 3333443 444 689999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.++.+||+|++.... +...+.+|.+.|..+.|+... +
T Consensus 117 tgg~ekllrvfdln~p~A---------------------------------------pp~E~~ghtg~Ir~v~wc~eD-~ 156 (334)
T KOG0278|consen 117 TGGQEKLLRVFDLNRPKA---------------------------------------PPKEISGHTGGIRTVLWCHED-K 156 (334)
T ss_pred ccchHHHhhhhhccCCCC---------------------------------------CchhhcCCCCcceeEEEeccC-c
Confidence 999999999999985322 235678999999999999887 6
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
.|++.++|++||+||.+++. ....+ .....|+++..++ ++.+|.++ ..+.|.+||..+ ..++..++ -.
T Consensus 157 ~iLSSadd~tVRLWD~rTgt--~v~sL-~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaks------f~~lKs~k-~P 224 (334)
T KOG0278|consen 157 CILSSADDKTVRLWDHRTGT--EVQSL-EFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKS------FGLLKSYK-MP 224 (334)
T ss_pred eEEeeccCCceEEEEeccCc--EEEEE-ecCCCCcceeecc-CCCEEEEe-cCceeEEecccc------ccceeecc-Cc
Confidence 78888999999999999998 44544 5678899999999 88887766 456799999998 56666665 46
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCCcceEEecCCCCcEEEEecC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
..|.+...+|+.. +|++|++|+.++.||..++ + -+.. ..||-++|.++.|+|+|.. .|
T Consensus 225 ~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tg-e--------------Ei~~~nkgh~gpVhcVrFSPdGE~-yA---- 283 (334)
T KOG0278|consen 225 CNVESASLHPKKE-FFVAGGEDFKVYKFDYNTG-E--------------EIGSYNKGHFGPVHCVRFSPDGEL-YA---- 283 (334)
T ss_pred cccccccccCCCc-eEEecCcceEEEEEeccCC-c--------------eeeecccCCCCceEEEEECCCCce-ee----
Confidence 6799999999986 6889999999999999985 2 2222 4899999999999998874 55
Q ss_pred CCCCCCCCCeEEEeecCC
Q 010997 452 DCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~ 469 (496)
+|+.||+|+||.+..
T Consensus 284 ---sGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 284 ---SGSEDGTIRLWQTTP 298 (334)
T ss_pred ---ccCCCceEEEEEecC
Confidence 566669999999873
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.7e-29 Score=242.15 Aligned_cols=255 Identities=22% Similarity=0.403 Sum_probs=219.2
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceE-EecCCCCcceeeeecCCCCceEEecCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
|...+.+..|. ..++++++.+++|++||..+. ..+.. +.||.+ .|+++++..-+.+|++|+.|
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~------------~~i~~~l~GH~g-~V~~l~~~~~~~~lvsgS~D 270 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNG------------YLILTRLVGHFG-GVWGLAFPSGGDKLVSGSTD 270 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccc------------eEEEeeccCCCC-CceeEEEecCCCEEEEEecC
Confidence 56778888886 457999999999999999888 55556 999998 69999998778899999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
.++++||..++.+ ...+.+|...|.++...+ ..+++|
T Consensus 271 ~t~rvWd~~sg~C----------------------------------------~~~l~gh~stv~~~~~~~---~~~~sg 307 (537)
T KOG0274|consen 271 KTERVWDCSTGEC----------------------------------------THSLQGHTSSVRCLTIDP---FLLVSG 307 (537)
T ss_pred CcEEeEecCCCcE----------------------------------------EEEecCCCceEEEEEccC---ceEeec
Confidence 9999999887655 478889999999998864 568899
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
+.|.+|++|++.++. .+..+.+|..+|+++..+ +.++++|+.||+|++||+++ +++++++.+|...|.+
T Consensus 308 s~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~s 376 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGA--CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVYS 376 (537)
T ss_pred cCCceEEEEeccCcc--eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEEE
Confidence 999999999999888 777777799999999995 78999999999999999998 8999999999999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
+.+.+. . .+.+|+.|+.|++||+.... .++..+.+|...|..+.+. +..++ +++
T Consensus 377 l~~~~~-~-~~~Sgs~D~~IkvWdl~~~~--------------~c~~tl~~h~~~v~~l~~~--~~~Lv--------s~~ 430 (537)
T KOG0274|consen 377 LIVDSE-N-RLLSGSLDTTIKVWDLRTKR--------------KCIHTLQGHTSLVSSLLLR--DNFLV--------SSS 430 (537)
T ss_pred EEecCc-c-eEEeeeeccceEeecCCchh--------------hhhhhhcCCcccccccccc--cceeE--------ecc
Confidence 999875 4 45699999999999999841 4566788999988777765 44444 666
Q ss_pred CCCeEEEeecCCCCcCCchHHHHHHHh-ccceEEEeccC
Q 010997 458 GGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSK 495 (496)
Q Consensus 458 ~Dg~i~iw~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~s 495 (496)
.||+|++||.. +++++.++++ |.+.|.++++.
T Consensus 431 aD~~Ik~WD~~------~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 431 ADGTIKLWDAE------EGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred ccccEEEeecc------cCceeeeeccCCcccEEEeecC
Confidence 67999999999 7899999998 67889888763
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.7e-28 Score=241.95 Aligned_cols=281 Identities=21% Similarity=0.357 Sum_probs=213.7
Q ss_pred CCceeEEEecCCCCcEEEEEe--CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 140 PGEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
...|.+|..+| ++..+|||+ .||.++||+.+.-..........-.+.+.....|.+ .|.|+.|+|||.+||+|+.|
T Consensus 13 ~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 13 EKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEECCCCCeEeeccCc
Confidence 45689999999 999999999 899999999876432221111112356677888988 79999999999999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
+.|.||..... ... ... .......+....+.+..+.+|...|.+++|+|++ .+|+++
T Consensus 91 ~~v~iW~~~~~-~~~-----~~f----------------gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~ 147 (942)
T KOG0973|consen 91 RLVMIWERAEI-GSG-----TVF----------------GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSV 147 (942)
T ss_pred ceEEEeeeccc-CCc-----ccc----------------cccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEe
Confidence 99999998631 000 000 0001122445667778999999999999999988 899999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC----------C--------
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS----------N-------- 359 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~----------~-------- 359 (496)
+.|++|.|||.++.. .+..+.+|.+.|..+.|+| -|+|||+-+.|++|++|++....- .
T Consensus 148 s~DnsViiwn~~tF~--~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFE--LLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred cccceEEEEccccce--eeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 999999999999986 7888899999999999999 999999999999999999654110 0
Q ss_pred ----------------------------CCCCCceEeccCCCCEEEEEEcCC--------C-------CC-EEEEEeCCC
Q 010997 360 ----------------------------GVGSPINKFEGHSAAVLCVQWSPD--------K-------SS-VFGSSAEDG 395 (496)
Q Consensus 360 ----------------------------~~~~~~~~~~~h~~~i~~l~~sp~--------~-------~~-llas~~~dg 395 (496)
...+.-..|-+|.+++.++.|+|. | .| ++|+|+.|+
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 011122334589999999999982 1 11 889999999
Q ss_pred cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 396 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 396 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
.|.||..... ..++..+.-....|.+++|+|+|-.|+ .||. ||+|.+..+.+.
T Consensus 305 SlSVW~T~~~--------------RPl~vi~~lf~~SI~DmsWspdG~~Lf-acS~-------DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 305 SLSVWNTALP--------------RPLFVIHNLFNKSIVDMSWSPDGFSLF-ACSL-------DGTVALIHFEEK 357 (942)
T ss_pred cEEEEecCCC--------------CchhhhhhhhcCceeeeeEcCCCCeEE-EEec-------CCeEEEEEcchH
Confidence 9999998653 122223333456899999999886655 4444 599999999854
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=9.3e-30 Score=226.31 Aligned_cols=270 Identities=20% Similarity=0.282 Sum_probs=218.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
....-.|.++|+.+.|.+ +...|++|+.|..|++|++.... .....+|.|-.+ .|+.+.|.+++.+++
T Consensus 168 ~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g-~it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK----------SELISTLAGSLG-NITSIDFDSDNKHVI 235 (459)
T ss_pred hhhhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch----------hhhhhhhhccCC-CcceeeecCCCceEE
Confidence 345567999999999999 77799999999999999998762 235567777766 699999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+++.|+.+++|++..... ..++.+|++.|+++.|.... .
T Consensus 236 Aas~d~~~r~Wnvd~~r~----------------------------------------~~TLsGHtdkVt~ak~~~~~-~ 274 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRL----------------------------------------RHTLSGHTDKVTAAKFKLSH-S 274 (459)
T ss_pred eecCCCceeeeeccchhh----------------------------------------hhhhcccccceeeehhhccc-c
Confidence 999999999999975433 36788999999999998877 4
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
.+++|+.|.+|++||+.... +..+. --.+.++.|..+ ...+++|..|+.|++||++. ..++.+...+.
T Consensus 275 ~vVsgs~DRtiK~WDl~k~~--C~kt~-l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs------~~~~~sv~~gg 342 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQKAY--CSKTV-LPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS------ADKTRSVPLGG 342 (459)
T ss_pred ceeeccccchhhhhhhhhhh--eeccc-cccccccceEec---ceeeeecccccceEEEeccC------CceeeEeecCc
Confidence 59999999999999999866 44433 234556667664 47789999999999999999 67888887655
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC--CCCcceEEecCCCCcEEEEec
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~p~~~~l~~s~s 450 (496)
.|+++..++++..++ +++.|..+.+.|++...-. ..+...+. ...++.+.|||++.|++
T Consensus 343 -~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~-------------~~~sA~g~k~asDwtrvvfSpd~~Yva---- 403 (459)
T KOG0288|consen 343 -RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIR-------------QTFSAEGFKCASDWTRVVFSPDGSYVA---- 403 (459)
T ss_pred -ceeeEeeccCCeEEe-eecCCCceeeeecccccEE-------------EEeeccccccccccceeEECCCCceee----
Confidence 999999999999876 6688999999999985221 12221111 12488999999999877
Q ss_pred CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccce--EEEeccCC
Q 010997 451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH--VISCTSKP 496 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~--v~~~~~sP 496 (496)
+||.||.|+||++. ++++...+...... |++++|+|
T Consensus 404 ----AGS~dgsv~iW~v~------tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 404 ----AGSADGSVYIWSVF------TGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred ----eccCCCcEEEEEcc------CceEEEEeccCCCCcceEEEEEcC
Confidence 78889999999999 67777777665554 99999987
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=7.9e-28 Score=210.96 Aligned_cols=305 Identities=16% Similarity=0.190 Sum_probs=226.3
Q ss_pred CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~ 173 (496)
+|+.++.-.+|+...- + ......+|+..|.++.|+. ++.+||||..+|.|+||...++
T Consensus 81 TGGgDD~AflW~~~~g-------------------e--~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTG-------------------E--FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred ecCCCceEEEEEccCC-------------------c--ceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccC
Confidence 5677888888875420 0 2446679999999999999 9999999999999999999998
Q ss_pred CCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCc--eecc
Q 010997 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS--IIKQ 251 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 251 (496)
.....+...-. .+.=|.|+|.+..|+.|+.||.|.+|.+.+................+... --+.
T Consensus 139 ------------~~~~~~~~e~~-dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 139 ------------GEQWKLDQEVE-DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred ------------ceEEEeecccC-ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 33334433333 46678999999999999999999999998742222222211111111111 0111
Q ss_pred CCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec--------cC
Q 010997 252 SPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--------AH 322 (496)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~ 322 (496)
.....++.+.+|+..+..++..+..- .....++.++..+ ..+++|+.++.+++-+..+++ .+.... .+
T Consensus 206 ~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgK--Vv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGK--VVNCNNGTVPELKPSQ 282 (399)
T ss_pred EEEecCceEEEEecCCCceeEEecccccCcCCcccccccc-ceeEeccCCccEEEEccccce--EEEecCCCCccccccc
Confidence 11245788999999999998887632 3456778888777 688999999999988877766 333222 45
Q ss_pred CCCeEEEEecCC--CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997 323 DADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 400 (496)
Q Consensus 323 ~~~v~~i~~sp~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iw 400 (496)
...+.|+.+.|. .-.+.|+|+.||+|.|||+.. ..++..-.|..+|+.+.|-+ ..+|+ +++.||.|+.|
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-------~~~R~~c~he~~V~~l~w~~-t~~l~-t~c~~g~v~~w 353 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-------STLRHICEHEDGVTKLKWLN-TDYLL-TACANGKVRQW 353 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEeccc-------chhheeccCCCceEEEEEcC-cchhe-eeccCceEEee
Confidence 666677776663 346789999999999999998 34445556999999999999 56555 88889999999
Q ss_pred ECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 401 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 401 d~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
|.+++ ++++...||...|.+++.+|+.+. ++++|+ |++.+||++.
T Consensus 354 DaRtG---------------~l~~~y~GH~~~Il~f~ls~~~~~-vvT~s~-------D~~a~VF~v~ 398 (399)
T KOG0296|consen 354 DARTG---------------QLKFTYTGHQMGILDFALSPQKRL-VVTVSD-------DNTALVFEVP 398 (399)
T ss_pred ecccc---------------ceEEEEecCchheeEEEEcCCCcE-EEEecC-------CCeEEEEecC
Confidence 99996 789999999999999999997664 555555 5999999875
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-28 Score=228.94 Aligned_cols=258 Identities=18% Similarity=0.350 Sum_probs=212.5
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEE
Q 010997 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 223 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iw 223 (496)
+-+.|+. .+.||.|.. ..|++|+..++ ........+. ..|+++.|+++|.+|+.|..+|.|.||
T Consensus 181 nlldWss--~n~laValg-~~vylW~~~s~------------~v~~l~~~~~-~~vtSv~ws~~G~~LavG~~~g~v~iw 244 (484)
T KOG0305|consen 181 NLLDWSS--ANVLAVALG-QSVYLWSASSG------------SVTELCSFGE-ELVTSVKWSPDGSHLAVGTSDGTVQIW 244 (484)
T ss_pred hHhhccc--CCeEEEEec-ceEEEEecCCC------------ceEEeEecCC-CceEEEEECCCCCEEEEeecCCeEEEE
Confidence 4456664 346777654 48999999887 2223333333 479999999999999999999999999
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEEcCCCe
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSC 302 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (496)
|...... +..+.+ |...|.+++|. ...+.+|+.|+.
T Consensus 245 D~~~~k~----------------------------------------~~~~~~~h~~rvg~laW~---~~~lssGsr~~~ 281 (484)
T KOG0305|consen 245 DVKEQKK----------------------------------------TRTLRGSHASRVGSLAWN---SSVLSSGSRDGK 281 (484)
T ss_pred ehhhccc----------------------------------------cccccCCcCceeEEEecc---CceEEEecCCCc
Confidence 9875432 244455 99999999998 267999999999
Q ss_pred EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC
Q 010997 303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382 (496)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 382 (496)
|..+|+|..+.... .+.+|...|..++|++ ++.+||+|+.|+.+.|||... ..++..+..|.++|..++|+|
T Consensus 282 I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVKA~awcP 353 (484)
T KOG0305|consen 282 ILNHDVRISQHVVS-TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVKALAWCP 353 (484)
T ss_pred EEEEEEecchhhhh-hhhcccceeeeeEECC-CCCeeccCCCccceEeccCCC------ccccEEEeccceeeeEeeeCC
Confidence 99999999874333 5789999999999999 999999999999999999977 688999999999999999999
Q ss_pred CCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCC
Q 010997 383 DKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG 460 (496)
Q Consensus 383 ~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg 460 (496)
-...|||+|+. |+.|++||...+. .+. ...-...|..+.|++...-++.+ .|-.++
T Consensus 354 ~q~~lLAsGGGs~D~~i~fwn~~~g~---------------~i~-~vdtgsQVcsL~Wsk~~kEi~st------hG~s~n 411 (484)
T KOG0305|consen 354 WQSGLLATGGGSADRCIKFWNTNTGA---------------RID-SVDTGSQVCSLIWSKKYKELLST------HGYSEN 411 (484)
T ss_pred CccCceEEcCCCcccEEEEEEcCCCc---------------Eec-ccccCCceeeEEEcCCCCEEEEe------cCCCCC
Confidence 98889999875 9999999999752 121 12235679999999988777766 445578
Q ss_pred eEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 461 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 461 ~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.|.||+.. +...+..+.+|+.+|..+++||
T Consensus 412 ~i~lw~~p------s~~~~~~l~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 412 QITLWKYP------SMKLVAELLGHTSRVLYLALSP 441 (484)
T ss_pred cEEEEecc------ccceeeeecCCcceeEEEEECC
Confidence 99999999 6788999999999999999998
No 85
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=235.54 Aligned_cols=277 Identities=14% Similarity=0.269 Sum_probs=212.9
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--CcceeeeecC-CCCceEEecC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCP-TEPYVLSGGK 216 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--~~v~~l~~~p-~~~~l~sg~~ 216 (496)
.+..++|...+ +-..|+.++.. .+.||.+....... ++...+.+-.. -.+..+.|+. +.++||+++.
T Consensus 39 k~~~nAIs~nr-~~~qiv~AGrs-~lklyai~~~~~~~--------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 39 KAKANAISVNR-DINQIVVAGRS-LLKLYAINPNDFSE--------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST 108 (839)
T ss_pred ccccceEeecC-CcceeEEeccc-ceeeEeeCcccCCc--------ceeeecccccceeeehhhcccccchhhhheeecC
Confidence 34566777777 55556666554 78888877653221 11111111111 0234667874 3679999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
.|.|.+||+.... ....+..|..|...++++.|++..+++|++
T Consensus 109 nG~i~vWdlnk~~-------------------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliS 151 (839)
T KOG0269|consen 109 NGVISVWDLNKSI-------------------------------------RNKLLTVFNEHERSANKLDFHSTEPNILIS 151 (839)
T ss_pred CCcEEEEecCccc-------------------------------------cchhhhHhhhhccceeeeeeccCCccEEEe
Confidence 9999999997421 122336788999999999999999999999
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~ 376 (496)
|+.||+|++||+|..+ ...++......|..|+|+|..++.|+++...|.+.+||+|.+. ++...+.+|.++|.
T Consensus 152 GSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-----r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-----RCEKKLTAHNGPVL 224 (839)
T ss_pred cCCCceEEEEeeeccc--ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-----hHHHHhhcccCceE
Confidence 9999999999999988 4555667889999999999889999999999999999999964 78889999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 456 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg 456 (496)
++.|+|++. .|||||.|+.|+|||+..... .+...+. -..+|..|.|-|..++.+|+|+ -
T Consensus 225 c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~----------~~~~tIn----Tiapv~rVkWRP~~~~hLAtcs-----m 284 (839)
T KOG0269|consen 225 CLNWHPNRE-WLATGGRDKMVKIWDMTDSRA----------KPKHTIN----TIAPVGRVKWRPARSYHLATCS-----M 284 (839)
T ss_pred EEeecCCCc-eeeecCCCccEEEEeccCCCc----------cceeEEe----ecceeeeeeeccCccchhhhhh-----c
Confidence 999999877 579999999999999986311 1111121 2458999999999999999884 4
Q ss_pred CCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 457 GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 457 g~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
..|-.|+|||++. .--+.+++..|+..++.++|-
T Consensus 285 v~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 285 VVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred cccceEEEEeecc-----ccccceeeeccCccccceecc
Confidence 5689999999984 345667888899999998884
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.7e-29 Score=208.40 Aligned_cols=265 Identities=17% Similarity=0.254 Sum_probs=222.7
Q ss_pred EecCCCceeEEEecC--CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 136 TIIHPGEVNRIRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p--~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
--+|+.+|-.++|+| .++.+|++++.||.-.+-+-+++ .-+.++.||.+ +|++..++.+..+-++
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg------------dwigtfeghkg-avw~~~l~~na~~aas 76 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG------------DWIGTFEGHKG-AVWSATLNKNATRAAS 76 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC------------CcEEeeeccCc-ceeeeecCchhhhhhh
Confidence 358999999999998 58889999999998888777777 66789999998 7999999988888999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
++.|=+-++||.-++... .. ..|..-|.+++|+.+. +.
T Consensus 77 aaadftakvw~a~tgdel----------------------------------------hs-f~hkhivk~~af~~ds-~~ 114 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDEL----------------------------------------HS-FEHKHIVKAVAFSQDS-NY 114 (334)
T ss_pred hcccchhhhhhhhhhhhh----------------------------------------hh-hhhhheeeeEEecccc-hh
Confidence 999999999998654321 22 2478889999999998 78
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
|++|+.+..++|||+...+.|. ..+.+|.+.|..+.|.. ..+.|++++.|++||+||.++ +..++++. ...
T Consensus 115 lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rT------gt~v~sL~-~~s 185 (334)
T KOG0278|consen 115 LLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRT------GTEVQSLE-FNS 185 (334)
T ss_pred hhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEecc------CcEEEEEe-cCC
Confidence 9999999999999999888654 44569999999999998 788899999999999999999 78888887 578
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
+|+++..+++|+ ++ +-...+.|.+||....+ ++.... -.-.|.+.+.+|+...++
T Consensus 186 ~VtSlEvs~dG~-il-Tia~gssV~Fwdaksf~---------------~lKs~k-~P~nV~SASL~P~k~~fV------- 240 (334)
T KOG0278|consen 186 PVTSLEVSQDGR-IL-TIAYGSSVKFWDAKSFG---------------LLKSYK-MPCNVESASLHPKKEFFV------- 240 (334)
T ss_pred CCcceeeccCCC-EE-EEecCceeEEecccccc---------------ceeecc-CccccccccccCCCceEE-------
Confidence 899999999998 44 66667899999998852 222221 223588999999876555
Q ss_pred CCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEeccCC
Q 010997 454 DSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP 496 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~sP 496 (496)
+||.|..++.||.. +++.+..+ ++|.++|.+|.|+|
T Consensus 241 -aGged~~~~kfDy~------TgeEi~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 241 -AGGEDFKVYKFDYN------TGEEIGSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred -ecCcceEEEEEecc------CCceeeecccCCCCceEEEEECC
Confidence 67778999999999 78877775 99999999999998
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=230.84 Aligned_cols=255 Identities=19% Similarity=0.317 Sum_probs=213.6
Q ss_pred cCCCcee---EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 138 IHPGEVN---RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 138 ~h~~~V~---~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.|...|+ .+..+.+++++|.|||.||.|++|++........ ......++.|.+ .|..+....+++.|+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------~~~~asme~HsD-WVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------TPYIASMEHHSD-WVNDIILCGNGKTLISA 91 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------cchhhhhhhhHh-HHhhHHhhcCCCceEEe
Confidence 3445566 5666667888999999999999999987743321 124667888998 79999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE-ccCCCce
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF-CPSSAQE 293 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~ 293 (496)
|.|-+|++|+..... .....++..|.+-|.|+++ .++. .+
T Consensus 92 SsDtTVK~W~~~~~~--------------------------------------~~c~stir~H~DYVkcla~~ak~~-~l 132 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDN--------------------------------------TFCMSTIRTHKDYVKCLAYIAKNN-EL 132 (735)
T ss_pred cCCceEEEeecccCc--------------------------------------chhHhhhhcccchheeeeecccCc-ee
Confidence 999999999987532 1123567789999999999 5665 78
Q ss_pred EEEEcCCCeEEEEEccCCCccc--------eeee-ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPV--------IKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~--------~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 364 (496)
+++||-|+.|.+||+.++.... ...+ .++...|++++.++ .+..|++|+..+.|++||.++ +..
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt------~~k 205 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT------CKK 205 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEecccc------ccc
Confidence 9999999999999999763201 1112 27888999999999 899999999999999999999 788
Q ss_pred ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc
Q 010997 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 444 (496)
Q Consensus 365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~ 444 (496)
+..+++|+..|..+..+++|..+| +++.||+|++||+... .+++++..|...|+++..+|+-..
T Consensus 206 imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQ---------------rCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 206 IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQ---------------RCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeecccc---------------ceeeeEEeccCceEEEeeCCCcce
Confidence 999999999999999999999865 9999999999999874 677888899999999999998887
Q ss_pred EEEEecCCCCCCCCCCeEEEeecCC
Q 010997 445 TVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 445 l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
++ +||.||.|..=|+++
T Consensus 270 vY--------sG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 270 VY--------SGGRDGNIYRTDLRN 286 (735)
T ss_pred EE--------ecCCCCcEEecccCC
Confidence 77 888899999999986
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.1e-28 Score=233.61 Aligned_cols=259 Identities=19% Similarity=0.318 Sum_probs=183.5
Q ss_pred EEe-cCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCcc-c-c---ccCCCCCceec------------c
Q 010997 190 ILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA-T-A---KSAGSSGSIIK------------Q 251 (496)
Q Consensus 190 ~l~-~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~-~---~~~~~~~~~~~------------~ 251 (496)
.+. .|.+ +|+++.|++||+|||+||.||.|+||.+............ . . ....+...... .
T Consensus 261 e~~~ah~g-aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 261 EISNAHKG-AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccccccCC-cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 345 7777 7999999999999999999999999998762210000000 0 0 00000000000 0
Q ss_pred CCCCCCCCCCC---CCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEE
Q 010997 252 SPKPGDGNDKA---ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 328 (496)
Q Consensus 252 ~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 328 (496)
........+.+ .-....+|+..|.+|.+.|.+|.|+.++ +|++++.|.+|+||++.... ++..+ .|...|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeEE-ecCCeeEE
Confidence 00000111111 1123457888999999999999999875 89999999999999998777 67776 79999999
Q ss_pred EEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (496)
Q Consensus 329 i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~ 408 (496)
|+|+|.|.+||++|+.||.||||++.. ..+.....-..-|++++|.|+|++. +.|+.+|.+++|+..... .
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~a-vIGt~~G~C~fY~t~~lk-~ 485 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKGA-VIGTFNGYCRFYDTEGLK-L 485 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCc-------CeeEeehhhhhhheeEEeccCCceE-EEEEeccEEEEEEccCCe-E
Confidence 999999999999999999999999997 4454454455889999999999975 589999999999998742 1
Q ss_pred cCCCCCCCCCCCeeEEEe----cCCCCCcceEEecCCCCc-EEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997 409 VEQGPRTTNYPAGLFFQH----AGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 483 (496)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~----~~h~~~V~~~~~~p~~~~-l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~ 483 (496)
+.. ..+... ..|. .|+.+.|.|.... ++|+ +.|..|||+|.+ +..++..|+
T Consensus 486 ~~~---------~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT--------SnDSrIRI~d~~------~~~lv~KfK 541 (712)
T KOG0283|consen 486 VSD---------FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT--------SNDSRIRIYDGR------DKDLVHKFK 541 (712)
T ss_pred EEe---------eeEeeccCccccCc-eeeeeEecCCCCCeEEEe--------cCCCceEEEecc------chhhhhhhc
Confidence 110 011111 1123 7999999997765 5533 335899999998 578888888
Q ss_pred hccc
Q 010997 484 KFKA 487 (496)
Q Consensus 484 ~h~~ 487 (496)
|+.+
T Consensus 542 G~~n 545 (712)
T KOG0283|consen 542 GFRN 545 (712)
T ss_pred cccc
Confidence 7754
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=213.89 Aligned_cols=265 Identities=17% Similarity=0.319 Sum_probs=213.0
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
-.+.++...| ....++||+.|..+.++|.... +.+.++.||.. .|+.+.++|+...+++++.|..|
T Consensus 220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~------------q~l~~~~Gh~k-ki~~v~~~~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSN------------QILATLKGHTK-KITSVKFHKDLDTVITASADEII 285 (506)
T ss_pred CCeeEEeecC-CCCcceecCCCCceEEEecchh------------hhhhhccCcce-EEEEEEeccchhheeecCCcceE
Confidence 4678888888 4678899999999999999988 77889999998 69999999999999999999999
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (496)
+||....... ......|..+|+.+..+|.| .+|++++.|
T Consensus 286 ~vws~~~~s~----------------------------------------~~~~~~h~~~V~~ls~h~tg-eYllsAs~d 324 (506)
T KOG0289|consen 286 RVWSVPLSSE----------------------------------------PTSSRPHEEPVTGLSLHPTG-EYLLSASND 324 (506)
T ss_pred EeeccccccC----------------------------------------ccccccccccceeeeeccCC-cEEEEecCC
Confidence 9999764321 14566799999999999999 799999999
Q ss_pred CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEE
Q 010997 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 380 (496)
|+..+.|++++............-.+++.+|+| |+.+|++|+.||.|+|||+.+ ...+..|.+|.++|..++|
T Consensus 325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred ceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC------ccccccCCCCCCceeEEEe
Confidence 999999999998322222222345689999999 999999999999999999999 6788999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCC
Q 010997 381 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG 460 (496)
Q Consensus 381 sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg 460 (496)
+.+|-+ ||++++|+.|++||+++.... ..+.+.. ...|.++.|.+.|.+|+++ |.|=
T Consensus 398 sENGY~-Lat~add~~V~lwDLRKl~n~-------------kt~~l~~-~~~v~s~~fD~SGt~L~~~--------g~~l 454 (506)
T KOG0289|consen 398 SENGYW-LATAADDGSVKLWDLRKLKNF-------------KTIQLDE-KKEVNSLSFDQSGTYLGIA--------GSDL 454 (506)
T ss_pred ccCceE-EEEEecCCeEEEEEehhhccc-------------ceeeccc-cccceeEEEcCCCCeEEee--------ccee
Confidence 999975 689999999999999985211 1122222 2269999999999988754 3334
Q ss_pred eEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997 461 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 461 ~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~ 494 (496)
.|++++-... ...++.++..|.+..+.+.|
T Consensus 455 ~Vy~~~k~~k----~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 455 QVYICKKKTK----SWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred EEEEEecccc----cceeeehhhhcccccceeee
Confidence 5555543322 35677788888877777766
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=5.1e-28 Score=220.85 Aligned_cols=290 Identities=17% Similarity=0.247 Sum_probs=210.3
Q ss_pred cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 010997 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (496)
Q Consensus 93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~ 172 (496)
.+|+-++++..|++.-..... +.++.+. ..-.-.|++++|++ .+..|++.+....++|+|...
T Consensus 183 ~sGs~Dy~v~~wDf~gMdas~---------------~~fr~l~-P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 183 VSGSLDYTVKFWDFQGMDASM---------------RSFRQLQ-PCETHQINSLQYSV-TGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred eeccccceEEEEecccccccc---------------hhhhccC-cccccccceeeecC-CCCeEEEEecCcceeEEccCC
Confidence 466789999999875432211 1111110 12233699999999 666666666677999999887
Q ss_pred CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCcccccc-CCccccccCCCCCceec
Q 010997 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIK 250 (496)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (496)
........|.+-..-+..-.||.. .++|.+|+|..+ .++|++.||++||||+++...... +.+
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~-------------- 310 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT-------------- 310 (641)
T ss_pred ceeeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee--------------
Confidence 654444444333344455689998 689999999855 899999999999999986432110 000
Q ss_pred cCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC-ccceeeeccCCC--CeE
Q 010997 251 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDA--DLH 327 (496)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~--~v~ 327 (496)
....+..-+++.++|++++ ..||+|+.||.|.+|+.+... .+......+|.. .|+
T Consensus 311 ---------------------k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It 368 (641)
T KOG0772|consen 311 ---------------------KPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT 368 (641)
T ss_pred ---------------------ccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCcee
Confidence 1112344578999999999 679999999999999986654 344556678887 999
Q ss_pred EEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC--CCEEEEEEcCCCCCEEEEEeC------CCcEEE
Q 010997 328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAE------DGLLNI 399 (496)
Q Consensus 328 ~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~--~~i~~l~~sp~~~~llas~~~------dg~i~i 399 (496)
||+||+ ++++|++-+.|+++++||+|++. +++....+-. .+-+.++|||+.+ |+++|.. -|.+.+
T Consensus 369 si~FS~-dg~~LlSRg~D~tLKvWDLrq~k-----kpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f 441 (641)
T KOG0772|consen 369 SISFSY-DGNYLLSRGFDDTLKVWDLRQFK-----KPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFF 441 (641)
T ss_pred EEEecc-ccchhhhccCCCceeeeeccccc-----cchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEE
Confidence 999999 99999999999999999999974 6676665532 3567899999998 5567764 467999
Q ss_pred EECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997 400 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 466 (496)
Q Consensus 400 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~ 466 (496)
||..+. ..+..+.-....|..+.|+|.-+.+++ |+.||+++||-
T Consensus 442 ~d~~t~---------------d~v~ki~i~~aSvv~~~WhpkLNQi~~--------gsgdG~~~vyY 485 (641)
T KOG0772|consen 442 FDRMTL---------------DTVYKIDISTASVVRCLWHPKLNQIFA--------GSGDGTAHVYY 485 (641)
T ss_pred Eeccce---------------eeEEEecCCCceEEEEeecchhhheee--------ecCCCceEEEE
Confidence 998775 444444445678999999999888885 44468898863
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=215.71 Aligned_cols=294 Identities=18% Similarity=0.305 Sum_probs=222.1
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCC-----CCCCCceEE-ecCCCCcceeeeecCC
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGA-----TNSRPDLIL-TGHQDNAEFALAMCPT 207 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~l-~~h~~~~v~~l~~~p~ 207 (496)
...-.|.-.|.+++++| +..++.+++.+|+|.=|++.++.....+... ....+...- .+|.. .+.+++.++|
T Consensus 136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k-eil~~avS~D 213 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK-EILTLAVSSD 213 (479)
T ss_pred eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc-eeEEEEEcCC
Confidence 34557999999999999 7789999999999999999988644211111 011222222 37877 6899999999
Q ss_pred CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
|+||++|+.|..|.||+.++. ++++.+.+|.+.|.+++|-
T Consensus 214 gkylatgg~d~~v~Iw~~~t~----------------------------------------ehv~~~~ghr~~V~~L~fr 253 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTL----------------------------------------EHVKVFKGHRGAVSSLAFR 253 (479)
T ss_pred CcEEEecCCCceEEEecCccc----------------------------------------chhhcccccccceeeeeee
Confidence 999999999999999999753 3446789999999999996
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
..- ..+++++.|++|++|++.... .+.++.+|.+.|..|.... .+..+-+|+.|+++++|++.. .....
T Consensus 254 ~gt-~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-------esqli 322 (479)
T KOG0299|consen 254 KGT-SELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-------ESQLI 322 (479)
T ss_pred cCc-cceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc-------cceee
Confidence 544 789999999999999998876 6777889999999998887 677888888999999999965 45566
Q ss_pred eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
+.+|.+.+-|++|-.+.. |++|+.||.|.+|++.+.........+....+.. ....+...|++++..| +..|+|
T Consensus 323 frg~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~---~~~~~~~Witsla~i~-~sdL~a 396 (479)
T KOG0299|consen 323 FRGGEGSIDCVAFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL---DPVNGNFWITSLAVIP-GSDLLA 396 (479)
T ss_pred eeCCCCCeeeEEEecccc--eeeccCCceEEEeeecccCceeEeeccccccCCc---cccccccceeeeEecc-cCceEE
Confidence 888999999999987765 5699999999999998843222111111000000 0112234789999999 555666
Q ss_pred EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
||+.+|.|++|.+.+..- .-.++..+. ..+-|++++|++
T Consensus 397 -------sGS~~G~vrLW~i~~g~r--~i~~l~~ls-~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 397 -------SGSWSGCVRLWKIEDGLR--AINLLYSLS-LVGFVNSLAFSN 435 (479)
T ss_pred -------ecCCCCceEEEEecCCcc--ccceeeecc-cccEEEEEEEcc
Confidence 666779999999985421 234555666 678899999874
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.3e-28 Score=216.48 Aligned_cols=264 Identities=20% Similarity=0.282 Sum_probs=204.4
Q ss_pred ecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 010997 92 QTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE 171 (496)
Q Consensus 92 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~ 171 (496)
.+.|+.+..+.+|++...+. -.+..+.+-.|.|+++.|.+ ++..+++++.|+.+++|++.
T Consensus 190 latgg~Dr~Ik~W~v~~~k~-------------------~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 190 LATGGSDRIIKLWNVLGEKS-------------------ELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhcchhhhhhhhhcccchh-------------------hhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeecc
Confidence 35566777788887643220 01223446778999999999 66778888999999999999
Q ss_pred CCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceecc
Q 010997 172 AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251 (496)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (496)
.. +...+|.||++ .|+++.|......+++|+.|.+|++||+....+.....
T Consensus 250 ~~------------r~~~TLsGHtd-kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------------- 300 (459)
T KOG0288|consen 250 SL------------RLRHTLSGHTD-KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------------- 300 (459)
T ss_pred ch------------hhhhhhccccc-ceeeehhhccccceeeccccchhhhhhhhhhheecccc----------------
Confidence 88 77789999999 69999998877779999999999999998755432211
Q ss_pred CCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997 252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331 (496)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 331 (496)
....+.+|..++ ..+++|..|++|++||.|+.. .......+ +.|+++..
T Consensus 301 -------------------------~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~--~~~sv~~g-g~vtSl~l 349 (459)
T KOG0288|consen 301 -------------------------PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSAD--KTRSVPLG-GRVTSLDL 349 (459)
T ss_pred -------------------------ccccccceEecc---eeeeecccccceEEEeccCCc--eeeEeecC-cceeeEee
Confidence 124566777662 569999999999999999988 45555444 59999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC----CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h----~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~ 407 (496)
++ ++..|++++.|.++.++|+++ ....+.+... ....+.+.|||++.| +|+||.||.|+||++.+.
T Consensus 350 s~-~g~~lLsssRDdtl~viDlRt------~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tg-- 419 (459)
T KOG0288|consen 350 SM-DGLELLSSSRDDTLKVIDLRT------KEIRQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTG-- 419 (459)
T ss_pred cc-CCeEEeeecCCCceeeeeccc------ccEEEEeeccccccccccceeEECCCCce-eeeccCCCcEEEEEccCc--
Confidence 99 899999999999999999998 4555555431 234889999999997 579999999999999985
Q ss_pred ccCCCCCCCCCCCeeEEEecC--CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997 408 KVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 466 (496)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~ 466 (496)
.+-+.+.. ....|++++|+|.|.+++ +++.++.+.+|.
T Consensus 420 -------------KlE~~l~~s~s~~aI~s~~W~~sG~~Ll--------sadk~~~v~lW~ 459 (459)
T KOG0288|consen 420 -------------KLEKVLSLSTSNAAITSLSWNPSGSGLL--------SADKQKAVTLWT 459 (459)
T ss_pred -------------eEEEEeccCCCCcceEEEEEcCCCchhh--------cccCCcceEecC
Confidence 23333333 233699999999999988 667779999994
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=217.00 Aligned_cols=240 Identities=20% Similarity=0.292 Sum_probs=197.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKD 217 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~D 217 (496)
....|.++.|-. ||.+||+|...|.|+|||+.+. ..+..+.+|+. +|..+.|+|.+ ..|++|+.|
T Consensus 67 Fk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r------------~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 67 FKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSR------------VILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred hccceeEEEeec-CCeEEEccCCcCcEEEeccccH------------HHHHHHhhccC-ceeEEEecccCCeEEEecCCC
Confidence 345699999988 9999999999999999996553 44567889998 79999999975 478899999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
+.+++||+.+... ...+.+|++.|.|.+|+|..+.+++||
T Consensus 133 ~v~k~~d~s~a~v----------------------------------------~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 133 KVVKYWDLSTAYV----------------------------------------QAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred ceEEEEEcCCcEE----------------------------------------EEEecCCcceeEeeccccCCCeEEEec
Confidence 9999999986432 246789999999999999987899999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
|.||+|++||+|... ..+..+ .|..+|..+.+-| ++.++|+++.. .|++||+-+. ++.+..+..|...|+|
T Consensus 173 sYDg~vrl~DtR~~~-~~v~el-nhg~pVe~vl~lp-sgs~iasAgGn-~vkVWDl~~G-----~qll~~~~~H~KtVTc 243 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLT-SRVVEL-NHGCPVESVLALP-SGSLIASAGGN-SVKVWDLTTG-----GQLLTSMFNHNKTVTC 243 (487)
T ss_pred CCCceEEEEEeccCC-ceeEEe-cCCCceeeEEEcC-CCCEEEEcCCC-eEEEEEecCC-----ceehhhhhcccceEEE
Confidence 999999999999986 234443 8999999999999 88999998754 6999999962 3555556669999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
+.+..++..| .+|+-|+.|++||+... ..++.. ...++|.+++.+|++..++ .|.
T Consensus 244 L~l~s~~~rL-lS~sLD~~VKVfd~t~~---------------Kvv~s~-~~~~pvLsiavs~dd~t~v--------iGm 298 (487)
T KOG0310|consen 244 LRLASDSTRL-LSGSLDRHVKVFDTTNY---------------KVVHSW-KYPGPVLSIAVSPDDQTVV--------IGM 298 (487)
T ss_pred EEeecCCceE-eecccccceEEEEccce---------------EEEEee-ecccceeeEEecCCCceEE--------Eec
Confidence 9999999865 59999999999997764 444433 4577999999999888777 455
Q ss_pred CCCeEEEee
Q 010997 458 GGGTLQIWR 466 (496)
Q Consensus 458 ~Dg~i~iw~ 466 (496)
.||.+.+=+
T Consensus 299 snGlv~~rr 307 (487)
T KOG0310|consen 299 SNGLVSIRR 307 (487)
T ss_pred ccceeeeeh
Confidence 567777663
No 94
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.7e-26 Score=227.15 Aligned_cols=240 Identities=16% Similarity=0.201 Sum_probs=174.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc-e
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-V 211 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~-l 211 (496)
.....+|.+.|.+++|+|.++++||+|+.||+|+|||+.+...... ....+...+.+|.. .|.+++|+|++.. |
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----~i~~p~~~L~gH~~-~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----EIKDPQCILKGHKK-KISIIDWNPMNYYIM 141 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----ccccceEEeecCCC-cEEEEEECCCCCeEE
Confidence 3456689999999999996688999999999999999976421100 01134567889987 6999999999875 5
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
++|+.|++|+|||++++.. ...+. |...|.+++|+|+|
T Consensus 142 aSgS~DgtIrIWDl~tg~~----------------------------------------~~~i~-~~~~V~SlswspdG- 179 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKR----------------------------------------AFQIN-MPKKLSSLKWNIKG- 179 (568)
T ss_pred EEEeCCCeEEEEECCCCcE----------------------------------------EEEEe-cCCcEEEEEECCCC-
Confidence 7999999999999986432 12232 45689999999999
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEE-----EecCCCCcEEEEEcCCC----cEEEEeCCCCCCCCCC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV-----DWNPLDDNLILTGSADN----SVRMFDRRNLTSNGVG 362 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i-----~~sp~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~ 362 (496)
.+|++++.|+.|+|||++++. .+..+.+|.+.+.+. .|++ ++.+|++++.|+ .|+|||++...
T Consensus 180 ~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~----- 251 (568)
T PTZ00420 180 NLLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTT----- 251 (568)
T ss_pred CEEEEEecCCEEEEEECCCCc--EEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCC-----
Confidence 789999999999999999987 556677888765433 3457 778888877664 79999999642
Q ss_pred CCceEec--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 363 SPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 363 ~~~~~~~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
.++..+. .+.+.+......+++. +|++|+.|+.|++|++... . ...+.. ..+..++..++|.|
T Consensus 252 ~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~-~------------~~~l~~-~~s~~p~~g~~f~P 316 (568)
T PTZ00420 252 SALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLG-S------------IRKVNE-YKSCSPFRSFGFLP 316 (568)
T ss_pred CceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCC-c------------EEeecc-cccCCCccceEEcc
Confidence 4555543 3334443444444455 6789999999999999763 1 011211 22556777888888
Q ss_pred CC
Q 010997 441 SD 442 (496)
Q Consensus 441 ~~ 442 (496)
..
T Consensus 317 kr 318 (568)
T PTZ00420 317 KQ 318 (568)
T ss_pred cc
Confidence 53
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.1e-26 Score=193.32 Aligned_cols=275 Identities=20% Similarity=0.316 Sum_probs=215.9
Q ss_pred cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 010997 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (496)
Q Consensus 93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~ 172 (496)
++|+.+....||+++... ..+.....+|.+.|-.++|.|..++++|+++.|.+|++||+..
T Consensus 36 asgs~dktv~v~n~e~~r-------------------~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 36 ASGSFDKTVSVWNLERDR-------------------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred eecccCCceEEEEecchh-------------------hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 466788888999886531 1223344689999999999999999999999999999999998
Q ss_pred CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (496)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
. ++........++ .-+.|+|+|++++.++.|..|.+.|.++.+...
T Consensus 97 ~------------k~~~~i~~~~en--i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~-------------------- 142 (313)
T KOG1407|consen 97 G------------KCTARIETKGEN--INITWSPDGEYIAVGNKDDRITFIDARTYKIVN-------------------- 142 (313)
T ss_pred C------------cEEEEeeccCcc--eEEEEcCCCCEEEEecCcccEEEEEecccceee--------------------
Confidence 8 566555554442 478999999999999999999999998643211
Q ss_pred CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec
Q 010997 253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332 (496)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 332 (496)
-......+..++|+-++ ++|+.....|+|.|.....-+ .+..+.+|.....||.|+
T Consensus 143 ---------------------~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk--pv~si~AH~snCicI~f~ 198 (313)
T KOG1407|consen 143 ---------------------EEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK--PVQSIKAHPSNCICIEFD 198 (313)
T ss_pred ---------------------hhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccc--cccccccCCcceEEEEEC
Confidence 11223467788998666 667666677999999888666 677788999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCC
Q 010997 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412 (496)
Q Consensus 333 p~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~ 412 (496)
| +|.+||+|+.|..+.|||+.. ..+++.+..+.-+|..|.||.+|+ +||+|++|..|-|=++.++.
T Consensus 199 p-~GryfA~GsADAlvSLWD~~E------LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd------ 264 (313)
T KOG1407|consen 199 P-DGRYFATGSADALVSLWDVDE------LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD------ 264 (313)
T ss_pred C-CCceEeeccccceeeccChhH------hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC------
Confidence 9 999999999999999999998 678999999999999999999999 57999999999998888852
Q ss_pred CCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC-CCCCCCCeEEEeecC
Q 010997 413 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC-DSTGGGGTLQIWRMS 468 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~-~sgg~Dg~i~iw~~~ 468 (496)
.+.. ..+.++...++|+|....|+.+|++.- .+.-..|.|+||-+.
T Consensus 265 ---------~~~e-I~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 265 ---------RVWE-IPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ---------eEEE-eeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 2222 235778899999997665544544320 012234788988775
No 96
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.96 E-value=1.2e-26 Score=197.36 Aligned_cols=312 Identities=21% Similarity=0.323 Sum_probs=227.0
Q ss_pred EEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCC-
Q 010997 85 QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSP- 163 (496)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg- 163 (496)
-++++||..-. .+|.+.+..++ ++.. .+....++.|.|+|..++-+|.+..+|+|+..+-
T Consensus 27 icFlvgTnslK-~dNqVhll~~d----------------~e~s--~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s 87 (370)
T KOG1007|consen 27 ICFLVGTNSLK-EDNQVHLLRLD----------------SEGS--ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTS 87 (370)
T ss_pred eEEEEeccccC-CcceeEEEEec----------------Cccc--hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccC
Confidence 47778875543 44776655432 2221 2223345678999999999999999999987632
Q ss_pred ------cEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCc
Q 010997 164 ------DVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP 236 (496)
Q Consensus 164 ------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 236 (496)
.+-||.+........ ....+.+..|. .+.+ .|.|+.|.|++..|++-. |..|.+|+++........-.
T Consensus 88 ~s~vl~~aaiw~ipe~~~~S~---~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ 162 (370)
T KOG1007|consen 88 DSGVLTGAAIWQIPEPLGQSN---SSTLECVASLDTEAVG-KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVL 162 (370)
T ss_pred CCcceeeEEEEecccccCccc---cchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeec
Confidence 578999876532211 11223344444 2333 589999999999888877 89999999986543211000
Q ss_pred cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC-ceEEEEcCCCeEEEEEccCCCccc
Q 010997 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPV 315 (496)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 315 (496)
...-.+|....++-+|+|... +.+++ ..|+++..||+|+... .
T Consensus 163 ----------------------------------ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~ 206 (370)
T KOG1007|consen 163 ----------------------------------SSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-N 206 (370)
T ss_pred ----------------------------------ccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-h
Confidence 001112566778889999432 44444 4679999999998763 3
Q ss_pred eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997 316 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (496)
Q Consensus 316 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg 395 (496)
.....+|...|..+.|+|....+|++|+.||.|+|||.|+.+ .++.++.+|...|.+|.|+|....|+.+|+.|.
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence 445568999999999999777889999999999999999864 789999999999999999998888889999999
Q ss_pred cEEEEECCCCCcccCCCCC--------------CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997 396 LLNIWDYEKVGKKVEQGPR--------------TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT 461 (496)
Q Consensus 396 ~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~ 461 (496)
.|.+|.......++..... ....+...+..+..|.+.|++++|+.-++|++||-|.| |.
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD-------GR 354 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD-------GR 354 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC-------ce
Confidence 9999998765433221110 01234456667889999999999999999999988887 99
Q ss_pred EEEeecC
Q 010997 462 LQIWRMS 468 (496)
Q Consensus 462 i~iw~~~ 468 (496)
+.|=.+.
T Consensus 355 viIs~V~ 361 (370)
T KOG1007|consen 355 VIISSVP 361 (370)
T ss_pred EEeecCC
Confidence 9988776
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2e-27 Score=200.09 Aligned_cols=266 Identities=15% Similarity=0.193 Sum_probs=204.5
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
-...+|+|.|+|+...- +.+.++||+.|.++++||+.++ +.+..+.... +|..+.|+++|++++.
T Consensus 46 Gty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tG------------k~la~~k~~~--~Vk~~~F~~~gn~~l~ 110 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETG------------KQLATWKTNS--PVKRVDFSFGGNLILA 110 (327)
T ss_pred eeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCC------------cEEEEeecCC--eeEEEeeccCCcEEEE
Confidence 35569999999999988 7889999999999999999999 5555665543 6899999999997776
Q ss_pred ec-----CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 214 GG-----KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 214 g~-----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
+. .-+.|.++|++.... +....+|...+..+.+.++.+-|.|
T Consensus 111 ~tD~~mg~~~~v~~fdi~~~~~---------------------------------~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 111 STDKQMGYTCFVSVFDIRDDSS---------------------------------DIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred EehhhcCcceEEEEEEccCChh---------------------------------hhcccCceEEecCCccceeeeeecc
Confidence 54 456899999875322 1123455677778889999999999
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
-+ ..|++|.+||.|.+||++++.. .+.....|...|+.+.++| +..++++|+.|.+-++||.++ ...+.++
T Consensus 158 l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~t------l~v~Kty 228 (327)
T KOG0643|consen 158 LG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRT------LEVLKTY 228 (327)
T ss_pred cC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccC-CcceEEecccCccceeeeccc------eeeEEEe
Confidence 98 7999999999999999999863 4555678999999999999 999999999999999999999 5677777
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC--CCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT--TNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
. -..+|++.+++|...+++..|+.+- -|+.+.........+. ...-.+.+....||-++|++++|+|+|....
T Consensus 229 ~-te~PvN~aaisP~~d~VilgGGqeA----~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs 303 (327)
T KOG0643|consen 229 T-TERPVNTAAISPLLDHVILGGGQEA----MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS 303 (327)
T ss_pred e-ecccccceecccccceEEecCCcee----eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc
Confidence 6 4779999999998887765555442 2222211000000000 0001123456789999999999999998655
Q ss_pred EEecCCCCCCCCCCeEEEeecCC
Q 010997 447 VSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|||.||.|++..+..
T Consensus 304 --------SGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 304 --------SGGEDGYVRLHHFDS 318 (327)
T ss_pred --------cCCCCceEEEEEecc
Confidence 888889999987763
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=199.29 Aligned_cols=244 Identities=18% Similarity=0.354 Sum_probs=192.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC--c
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y 210 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--~ 210 (496)
......|.+.|++++. ++.++|+|+.|-+|+|||+.+. .....+-.|.+ .|+++.|.+.-. .
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~------------~qlg~ll~Hag-sitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKR------------KQLGILLSHAG-SITALKFYPPLSKSH 99 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccch------------hhhcceecccc-ceEEEEecCCcchhh
Confidence 4456689999999998 6689999999999999999987 55567788877 699999998764 8
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|++|+.||.|.+|+... ...+..+.+|.+.|++++.+|.+
T Consensus 100 LlS~sdDG~i~iw~~~~----------------------------------------W~~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGS----------------------------------------WELLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred eeeecCCCcEEEEEcCC----------------------------------------eEEeeeecccccccceeEecCCC
Confidence 99999999999999863 34557889999999999999999
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
.+-++.+.|+.+++||+-.++...+..+ .+ ..+.|.|+| .|.+|+.++.++ |-+|-+.+ ......+.
T Consensus 140 -KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~--~at~v~w~~-~Gd~F~v~~~~~-i~i~q~d~------A~v~~~i~- 206 (362)
T KOG0294|consen 140 -KLALSVGGDQVLRTWNLVRGRVAFVLNL-KN--KATLVSWSP-QGDHFVVSGRNK-IDIYQLDN------ASVFREIE- 206 (362)
T ss_pred -ceEEEEcCCceeeeehhhcCccceeecc-CC--cceeeEEcC-CCCEEEEEeccE-EEEEeccc------HhHhhhhh-
Confidence 7889999999999999998884333333 23 234499999 888888887765 88998887 33333333
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe-cCCCCcEEEEe
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW-NASDPWTVVSV 449 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~p~~~~l~~s~ 449 (496)
....+.++.|-..+. |++|++|+.|.+||.... .+.+.+.+|..+|-++.+ ......+++|+
T Consensus 207 ~~~r~l~~~~l~~~~--L~vG~d~~~i~~~D~ds~---------------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 207 NPKRILCATFLDGSE--LLVGGDNEWISLKDTDSD---------------TPLTEFLAHENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred ccccceeeeecCCce--EEEecCCceEEEeccCCC---------------ccceeeecchhheeeeEEEecCCceEEEEe
Confidence 335577888865543 459999999999999863 456667899999999984 32244567765
Q ss_pred cCCCCCCCCCCeEEEeecCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|. ||.|+|||++-
T Consensus 270 SS-------DG~I~vWd~~~ 282 (362)
T KOG0294|consen 270 SS-------DGFIKVWDIDM 282 (362)
T ss_pred cc-------CceEEEEEccc
Confidence 55 59999999983
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.8e-26 Score=196.45 Aligned_cols=261 Identities=18% Similarity=0.307 Sum_probs=200.1
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
...|.++.|+| .+..|+.++.||++++||+.... ....+ .|.. ++.+++|.+ ...+++|+.||.
T Consensus 13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~------------l~~~~-~~~~-plL~c~F~d-~~~~~~G~~dg~ 76 (323)
T KOG1036|consen 13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANS------------LKLKF-KHGA-PLLDCAFAD-ESTIVTGGLDGQ 76 (323)
T ss_pred hhceeeEEEcC-cCCcEEEEeccCcEEEEeccchh------------hhhhe-ecCC-ceeeeeccC-CceEEEeccCce
Confidence 46799999998 55556666799999999998772 11222 2444 789999986 457899999999
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
|+.+|++++.. ..+..|..+|.+|.+++.. ..+++||.
T Consensus 77 vr~~Dln~~~~-----------------------------------------~~igth~~~i~ci~~~~~~-~~vIsgsW 114 (323)
T KOG1036|consen 77 VRRYDLNTGNE-----------------------------------------DQIGTHDEGIRCIEYSYEV-GCVISGSW 114 (323)
T ss_pred EEEEEecCCcc-----------------------------------------eeeccCCCceEEEEeeccC-CeEEEccc
Confidence 99999987543 4566799999999999876 68999999
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEEEE
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCV 378 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~~l 378 (496)
|++|++||.|... ....+ .....|.|+.. .++.|++|+.|..|.+||+|++.. +.. .-..-+..+.+|
T Consensus 115 D~~ik~wD~R~~~--~~~~~-d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~-----~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 115 DKTIKFWDPRNKV--VVGTF-DQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDE-----PFQRRESSLKYQTRCV 183 (323)
T ss_pred CccEEEEeccccc--ccccc-ccCceEEEEec---cCCEEEEeecCceEEEEEcccccc-----hhhhccccceeEEEEE
Confidence 9999999999744 23333 34458999887 468899999999999999999652 221 112345678999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC---------CcceEEecCCCCcEEEEe
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---------KVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~~~~~p~~~~l~~s~ 449 (496)
++-|++.- +|+++-||+|.+=.+....+. ....+.+..|.. +|++++|+|-...++
T Consensus 184 ~~~pn~eG-y~~sSieGRVavE~~d~s~~~-----------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa--- 248 (323)
T KOG1036|consen 184 ALVPNGEG-YVVSSIEGRVAVEYFDDSEEA-----------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA--- 248 (323)
T ss_pred EEecCCCc-eEEEeecceEEEEccCCchHH-----------hhhceeEEeeecccCCceEEEEeceeEeccccceEE---
Confidence 99998775 578999999988666553111 123344455543 799999999766655
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
|||.||.|.+||+. ..+.+..+......|.+++|+
T Consensus 249 -----TgGsDG~V~~Wd~~------~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 249 -----TGGSDGIVNIWDLF------NRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred -----ecCCCceEEEccCc------chhhhhhccCCCCceEEEEec
Confidence 88888999999999 678888888888889999886
No 100
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.3e-27 Score=210.87 Aligned_cols=286 Identities=19% Similarity=0.280 Sum_probs=213.6
Q ss_pred HhhhhCcCCCCc--ceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccce
Q 010997 56 DWLANHNLVWPS--LSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK 133 (496)
Q Consensus 56 ~~~~~~~~~wps--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (496)
+++.+|.+--|+ |+++|+.. +...+...+-+.+|| ++..|.||++.+..+..+...--+.-.........+.
T Consensus 163 nlYvHHD~ilpafPLC~ewld~-~~~~~~~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~ 236 (463)
T KOG0270|consen 163 NLYVHHDFILPAFPLCIEWLDH-GSKSGGAGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRS 236 (463)
T ss_pred ceeEecceeccCcchhhhhhhc-CCCCCCCcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccc
Confidence 455677765565 59999887 433333345676776 6678999999886653332100000000000000012
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVL 212 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~ 212 (496)
....+|+++|..++|.....++||+||.|.+|++||+.++ +|..++..|.+ .|.++.|+|. ..+|+
T Consensus 237 ~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g------------~p~~s~~~~~k-~Vq~l~wh~~~p~~LL 303 (463)
T KOG0270|consen 237 NSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG------------KPKSSITHHGK-KVQTLEWHPYEPSVLL 303 (463)
T ss_pred cccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC------------CcceehhhcCC-ceeEEEecCCCceEEE
Confidence 2345799999999999988899999999999999999999 77778887766 7999999997 45899
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.|++|.+.|.+..... ...-...+.|..++|.|..+.
T Consensus 304 sGs~D~~V~l~D~R~~~~s----------------------------------------~~~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 304 SGSYDGTVALKDCRDPSNS----------------------------------------GKEWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred eccccceEEeeeccCcccc----------------------------------------CceEEeccceEEEEecCCCce
Confidence 9999999999999842110 111123468999999999989
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
.|+++.+||+|+-+|+|.... ++.+..+|..+|.+|+++++...+++|++.|+.|++|++.... .+.+..-.-.-
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~----~~~v~~~~~~~ 418 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS----PKSVKEHSFKL 418 (463)
T ss_pred eEEEecCCceEEeeecCCCCC-ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC----Ccccccccccc
Confidence 999999999999999999864 5677889999999999999889999999999999999998743 22222211112
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+...|.++.|+-.+++|.|+..+.++|||+.+.
T Consensus 419 ~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 419 GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceeecccCCCcceEEEecCccceEEEeecccC
Confidence 347788999999989999999999999999874
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=200.00 Aligned_cols=264 Identities=21% Similarity=0.342 Sum_probs=214.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC----CC----cc--------------------ccCCCCC
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ----PN----RH--------------------AVLGATN 184 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~----~~----~~--------------------~~~~~~~ 184 (496)
+.+..+|.|.|++|+|++ .+.++++++.|++..||...-. .+ .. ...++.-
T Consensus 183 L~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred eeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 456789999999999999 8889999999999999983211 00 00 0111122
Q ss_pred CCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997 185 SRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (496)
Q Consensus 185 ~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (496)
..|+..|.||.. .|.+..|...|+.+++++.|.+..+||++++.
T Consensus 262 RvPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge----------------------------------- 305 (481)
T KOG0300|consen 262 RVPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANLWDVETGE----------------------------------- 305 (481)
T ss_pred eeeeeeeecccc-ceEehhhhcCcceeeeeeccccceeeeeccCc-----------------------------------
Confidence 357778999998 78899999999999999999999999998653
Q ss_pred CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
++..+.+|....+.++-+|.. .++++.+.|.+.++||+|.. .+.+..+++|...|+++.|+. +..+++|+.
T Consensus 306 -----~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~vF~~--dd~vVSgSD 376 (481)
T KOG0300|consen 306 -----VVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA-IQSVAVFQGHTDTVTSVVFNT--DDRVVSGSD 376 (481)
T ss_pred -----eeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh-cceeeeecccccceeEEEEec--CCceeecCC
Confidence 347788999999999999988 79999999999999999944 346778899999999999996 677899999
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
|.+|++||++++. .++.++. -.++++.++.+..++ ++|.--+++.|++||++... +. .-+-.
T Consensus 377 DrTvKvWdLrNMR-----splATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~R--la---------RlPrt 438 (481)
T KOG0300|consen 377 DRTVKVWDLRNMR-----SPLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNR--LA---------RLPRT 438 (481)
T ss_pred CceEEEeeecccc-----Ccceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCc--cc---------cCCcc
Confidence 9999999999985 7888887 477899999998777 78888888999999998631 11 11222
Q ss_pred EecCCCCCcceEEecCCCC--cEEEEecCCCCCCCCCCeEEEeecC
Q 010997 425 QHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 425 ~~~~h~~~V~~~~~~p~~~--~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
...||...|.+++|..+-+ .|+ ++|-|..+.=|++.
T Consensus 439 sRqgHrRMV~c~AW~eehp~cnLf--------tcGFDR~v~gW~in 476 (481)
T KOG0300|consen 439 SRQGHRRMVTCCAWLEEHPACNLF--------TCGFDRMVAGWKIN 476 (481)
T ss_pred cccccceeeeeeeccccCcccccc--------cccccceeeeeEec
Confidence 4579999999999986543 344 77888999999987
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-27 Score=197.40 Aligned_cols=242 Identities=23% Similarity=0.311 Sum_probs=187.3
Q ss_pred EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 191 l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
-..|.+ .|..+...-.|++|+||+.|++|+|+.++.... ..+
T Consensus 7 dt~H~D-~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-------------------------------------s~l 48 (299)
T KOG1332|consen 7 DTQHED-MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-------------------------------------SKL 48 (299)
T ss_pred hhhhhh-hhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-------------------------------------cee
Confidence 456776 678888877899999999999999999975321 234
Q ss_pred eeeeecCCCceeEEEEc-cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC-CcEEEEEcCCCcE
Q 010997 271 RGIYNGHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-DNLILTGSADNSV 348 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~dg~i 348 (496)
+..+.+|.++|..++|. |.-+.+|++++.||.|.||.-..++.........|...|++|+|.|+. +-+||+++.||.|
T Consensus 49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 57899999999999995 444489999999999999999888765666677899999999999953 5688999999999
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC---CC----------CEEEEEeCCCcEEEEECCCCCcccCCCCCC
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KS----------SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~---~~----------~llas~~~dg~i~iwd~~~~~~~~~~~~~~ 415 (496)
.|++.+.... .........|.-.|++++|.|- |. +-|++|+.|..|+||+.... .
T Consensus 129 svl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~-------- 196 (299)
T KOG1332|consen 129 SVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-S-------- 196 (299)
T ss_pred EEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-c--------
Confidence 9999987411 2334455789999999999996 31 23789999999999999873 1
Q ss_pred CCCCCeeEEEecCCCCCcceEEecCCC---CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEe
Q 010997 416 TNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC 492 (496)
Q Consensus 416 ~~~~~~~~~~~~~h~~~V~~~~~~p~~---~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~ 492 (496)
-.+-..+.+|.+.|.+++|.|.- ...+||||.| |+|.||........-. ...|+.+...+.++
T Consensus 197 ----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD-------g~viIwt~~~e~e~wk---~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 197 ----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD-------GTVIIWTKDEEYEPWK---KTLLEEFPDVVWRV 262 (299)
T ss_pred ----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC-------CcEEEEEecCccCccc---ccccccCCcceEEE
Confidence 12222378999999999999975 3467766665 9999999883221122 23344467888999
Q ss_pred ccCC
Q 010997 493 TSKP 496 (496)
Q Consensus 493 ~~sP 496 (496)
.||+
T Consensus 263 SWS~ 266 (299)
T KOG1332|consen 263 SWSL 266 (299)
T ss_pred EEec
Confidence 8875
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=204.73 Aligned_cols=273 Identities=18% Similarity=0.303 Sum_probs=219.8
Q ss_pred CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~ 173 (496)
+|+.+..|.||+...-+-+-+ + +|. ..-.+.-|..+|.|+.|+. +..+||+|+.||.|+||.+.++
T Consensus 230 sgSvDGFiEVWny~~GKlrKD----L-kYQ--------Aqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 230 SGSVDGFIEVWNYTTGKLRKD----L-KYQ--------AQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred eccccceeeeehhccchhhhh----h-hhh--------hhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecc
Confidence 567888888887653221100 0 011 1124567899999999999 8899999999999999999999
Q ss_pred CCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997 174 PNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
.++..+. .|+. .|+|+.|+.|+..+++++.|.++++.-+..+++
T Consensus 296 ------------~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~---------------------- 340 (508)
T KOG0275|consen 296 ------------QCLRRFDRAHTK-GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC---------------------- 340 (508)
T ss_pred ------------hHHHHhhhhhcc-CeeEEEEccCcchhhcccccceEEEeccccchh----------------------
Confidence 5555565 7887 699999999999999999999999998875543
Q ss_pred CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec--cCCCCeEEEE
Q 010997 253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVD 330 (496)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~ 330 (496)
+..+.+|++-|+...|.++| ..+++++.||+|++|+..+.. +..+++ +...+|+++-
T Consensus 341 ------------------LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~ 399 (508)
T KOG0275|consen 341 ------------------LKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVI 399 (508)
T ss_pred ------------------HHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchh--hhhhccCCCCcccceeEE
Confidence 47788999999999999999 899999999999999999887 444433 4567899999
Q ss_pred ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 331 ~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~ 407 (496)
.-|.+...++++...++|.|.++. ++.+++|.. ..+...+.+.||.|.+++ +.++|+.++.|.+.++
T Consensus 400 ~~PKnpeh~iVCNrsntv~imn~q-------GQvVrsfsSGkREgGdFi~~~lSpkGewiY-cigED~vlYCF~~~sG-- 469 (508)
T KOG0275|consen 400 LLPKNPEHFIVCNRSNTVYIMNMQ-------GQVVRSFSSGKREGGDFINAILSPKGEWIY-CIGEDGVLYCFSVLSG-- 469 (508)
T ss_pred EcCCCCceEEEEcCCCeEEEEecc-------ceEEeeeccCCccCCceEEEEecCCCcEEE-EEccCcEEEEEEeecC--
Confidence 999888999999999999999988 578888853 345677888999999865 7778999999999885
Q ss_pred ccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
.+-..+.-|...|..++-+|. ..++|+.++| |.+++|..
T Consensus 470 -------------~LE~tl~VhEkdvIGl~HHPH-qNllAsYsED-------gllKLWkp 508 (508)
T KOG0275|consen 470 -------------KLERTLPVHEKDVIGLTHHPH-QNLLASYSED-------GLLKLWKP 508 (508)
T ss_pred -------------ceeeeeecccccccccccCcc-cchhhhhccc-------chhhhcCC
Confidence 344456678888999999995 4578877776 99999963
No 104
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.6e-26 Score=193.68 Aligned_cols=280 Identities=19% Similarity=0.353 Sum_probs=206.6
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEEe
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSG 214 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~sg 214 (496)
.+|.+-|+++.|.+ .|+.+|||+.|++|+|||..... .........+.|.+ .|..+.|.+- |+.+|+|
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s--------~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDS--------GTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATC 79 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCC--------CceEEeeeEEecCC-cEEEEEecCccccceEEEE
Confidence 37889999999999 89999999999999999986552 23355567888988 6889999653 8899999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-Cce
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE 293 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~ 293 (496)
+.|+++.||.-....... .........++......|++|+|.|.. +-.
T Consensus 80 S~Drtv~iWEE~~~~~~~-------------------------------~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEA-------------------------------HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred ecCCceeeeeeccccccc-------------------------------ccceeEEEEEeecCCcceeEEEecchhcceE
Confidence 999999999753211100 001223346677788999999999964 257
Q ss_pred EEEEcCCCeEEEEEccCCCc----ccee-------eeccCCCCeEEEEecCC--CCcEEEEEcCC-----CcEEEEeCCC
Q 010997 294 FCSVGDDSCLILWDARVGTS----PVIK-------VEKAHDADLHCVDWNPL--DDNLILTGSAD-----NSVRMFDRRN 355 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~----~~~~-------~~~~~~~~v~~i~~sp~--~~~~l~sgs~d-----g~i~iwd~~~ 355 (496)
+++++.||.|+||+.-..-. ++.. ....+..+..|+.|+|. ...+||.|+.+ +.+.||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 99999999999998765321 1111 12246677889999983 35788988876 5789997665
Q ss_pred CCCCCCCCCceEeccCCCCEEEEEEcCCC---CCEEEEEeCCCcEEEEECCCCCcccCCCC-----CCCCCCCeeEEEec
Q 010997 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGP-----RTTNYPAGLFFQHA 427 (496)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~~---~~llas~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 427 (496)
... ....+.++.+|..+|+.++|.|+- -++||+++.|| |+||.+.........+. .....+.+++..+.
T Consensus 209 ~~r--Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 209 NGR--KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred Ccc--eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 220 144567788999999999999973 24889999999 99999986432222211 11235667788899
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+|.+.|..+.|+-.|. +++ |.|.||.||+|...
T Consensus 286 ~H~~~VWrv~wNmtGt-iLs-------StGdDG~VRLWkan 318 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGT-ILS-------STGDDGCVRLWKAN 318 (361)
T ss_pred CCCCceEEEEEeeeee-EEe-------ecCCCceeeehhhh
Confidence 9999999999999775 444 55556999999876
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.1e-26 Score=205.18 Aligned_cols=249 Identities=15% Similarity=0.219 Sum_probs=198.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+.||.-.|+.+.|+| +...+++++.|..|+||..... ........|.. +|+.+..+|.|.||+++
T Consensus 256 ~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~------------s~~~~~~~h~~-~V~~ls~h~tgeYllsA 321 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLS------------SEPTSSRPHEE-PVTGLSLHPTGEYLLSA 321 (506)
T ss_pred hccCcceEEEEEEecc-chhheeecCCcceEEeeccccc------------cCccccccccc-cceeeeeccCCcEEEEe
Confidence 3458999999999999 8889999999999999998876 33456677887 79999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.||+..+.|++++..... ..-....-.+++.+||||| .+|
T Consensus 322 s~d~~w~Fsd~~~g~~lt~--------------------------------------vs~~~s~v~~ts~~fHpDg-Lif 362 (506)
T KOG0289|consen 322 SNDGTWAFSDISSGSQLTV--------------------------------------VSDETSDVEYTSAAFHPDG-LIF 362 (506)
T ss_pred cCCceEEEEEccCCcEEEE--------------------------------------EeeccccceeEEeeEcCCc-eEE
Confidence 9999999999987643210 0001122358999999999 899
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC-CC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SA 373 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~ 373 (496)
.+|..||.|+|||+.++. ....+.+|+++|..|+|+. +|.+||+++.|+.|++||+|. .+.+.++.-. ..
T Consensus 363 gtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRK------l~n~kt~~l~~~~ 433 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRK------LKNFKTIQLDEKK 433 (506)
T ss_pred eccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehh------hcccceeeccccc
Confidence 999999999999999887 5677889999999999999 999999999999999999999 4445555422 23
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
.|.++.|.+.|.+| +.++.|=.|++++-.+ .....+..+..|.+..+.+.|.....+++
T Consensus 434 ~v~s~~fD~SGt~L-~~~g~~l~Vy~~~k~~-------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~------- 492 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYL-GIAGSDLQVYICKKKT-------------KSWTEIKELADHSGLSTGVRFGEHAQYLA------- 492 (506)
T ss_pred cceeEEEcCCCCeE-EeecceeEEEEEeccc-------------ccceeeehhhhcccccceeeecccceEEe-------
Confidence 79999999999975 5777775666665333 12345666777888889999988766554
Q ss_pred CCCCCCCeEEEeec
Q 010997 454 DSTGGGGTLQIWRM 467 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~ 467 (496)
++|.|..++++.+
T Consensus 493 -s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 493 -STSMDAILRLYAL 505 (506)
T ss_pred -eccchhheEEeec
Confidence 6777788888764
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.2e-26 Score=207.75 Aligned_cols=237 Identities=19% Similarity=0.306 Sum_probs=197.5
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+|...|.+++.+| ++++||+|+.|..|.||+.++. .++..+.+|.+ .|.+++|-.....|++++.
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~------------ehv~~~~ghr~-~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTL------------EHVKVFKGHRG-AVSSLAFRKGTSELYSASA 264 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCccc------------chhhccccccc-ceeeeeeecCccceeeeec
Confidence 38999999999999 9999999999999999999998 77788999998 7999999988789999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
|++|++|+++.. ..+.++.+|.+.|.+|....-. ..+.+
T Consensus 265 Drsvkvw~~~~~----------------------------------------s~vetlyGHqd~v~~IdaL~re-R~vtV 303 (479)
T KOG0299|consen 265 DRSVKVWSIDQL----------------------------------------SYVETLYGHQDGVLGIDALSRE-RCVTV 303 (479)
T ss_pred CCceEEEehhHh----------------------------------------HHHHHHhCCccceeeechhccc-ceEEe
Confidence 999999999743 2236778999999999887766 56666
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-c-----
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-G----- 370 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~----- 370 (496)
|+.|+++++|++.... ...+.++.+.+-|++|- +...|++|+.+|.|.||++.+ .+++.+.. .
T Consensus 304 GgrDrT~rlwKi~ees---qlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~K------Kkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLK------KKPLFTSRLAHGVIP 372 (479)
T ss_pred ccccceeEEEeccccc---eeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecc------cCceeEeeccccccC
Confidence 7799999999995544 44567899999999998 578899999999999999998 45555442 1
Q ss_pred ------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc
Q 010997 371 ------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 444 (496)
Q Consensus 371 ------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~ 444 (496)
+...|++|+..|... |+|+|+.+|.|++|-+..+-. +..+++.+. -.+.|++++|+++|.+
T Consensus 373 ~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r-----------~i~~l~~ls-~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR-----------AINLLYSLS-LVGFVNSLAFSNSGKR 439 (479)
T ss_pred CccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc-----------ccceeeecc-cccEEEEEEEccCCCE
Confidence 223799999999887 789999999999999988522 224555554 5678999999999999
Q ss_pred EEEEecCC
Q 010997 445 TVVSVSDD 452 (496)
Q Consensus 445 l~~s~s~d 452 (496)
++|.++..
T Consensus 440 ivagiGkE 447 (479)
T KOG0299|consen 440 IVAGIGKE 447 (479)
T ss_pred EEEecccc
Confidence 99877665
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=207.68 Aligned_cols=247 Identities=19% Similarity=0.371 Sum_probs=201.3
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
+.+--+|.|.|++-+| +|.+|+.|+..|.|++|.+.++ ..+..+.+|-. .|+|+.|+.||.+|+||
T Consensus 76 q~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG------------~LL~v~~aHYQ-~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSG------------ILLNVLSAHYQ-SITCLKFSDDGSHIITG 141 (476)
T ss_pred hhcccccceeeeecCC-CceEEEeecccCcEEEEEeccc------------cHHHHHHhhcc-ceeEEEEeCCCcEEEec
Confidence 4566789999999999 9999999999999999999999 67777889988 69999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-Cce
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE 293 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~ 293 (496)
|.||.|.+|++.+-... .+.....++..+..|.-+|+++...+.+ ...
T Consensus 142 skDg~V~vW~l~~lv~a-------------------------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r 190 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSA-------------------------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR 190 (476)
T ss_pred CCCccEEEEEEEeeccc-------------------------------ccCCCccceeeeccCcceeEEEEecCCCccce
Confidence 99999999998642110 0112567789999999999999997753 248
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC----------CCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN----------GVGS 363 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~----------~~~~ 363 (496)
++|+|.|.++++||+..+. ++... .....+++++.+| .+..+..|+.+|.|.+.++...... ..+.
T Consensus 191 l~TaS~D~t~k~wdlS~g~--LLlti-~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 191 LYTASEDRTIKLWDLSLGV--LLLTI-TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred EEEecCCceEEEEEeccce--eeEEE-ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 9999999999999999987 44443 5678999999999 8999999999999999998775411 1234
Q ss_pred CceEeccCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 364 PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 364 ~~~~~~~h~~--~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
.+..+.+|.+ +|+|++.+-||. +|++|+.||.|+|||+... +++.++....++|+.+.+.|-
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~---------------Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK---------------QCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH---------------HHHHHHhhhccccceeEeecc
Confidence 5667788988 999999999998 6789999999999999874 344444435677888888665
Q ss_pred CCcEE
Q 010997 442 DPWTV 446 (496)
Q Consensus 442 ~~~l~ 446 (496)
.+..+
T Consensus 331 ~~~~~ 335 (476)
T KOG0646|consen 331 ERGII 335 (476)
T ss_pred cccee
Confidence 44333
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4.1e-26 Score=215.93 Aligned_cols=329 Identities=16% Similarity=0.252 Sum_probs=247.8
Q ss_pred ChhHhHhhhhCcCCCCcceEeccCC-cccCCCcceEEEEEEeecCCCCCCeEEEEEEeccC-------cchhhhcccccc
Q 010997 51 VPVLYDWLANHNLVWPSLSCRWGPQ-LEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK-------PRVAAAEHISQF 122 (496)
Q Consensus 51 ~~~ly~~~~~~~~~wps~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-------~~~~~~~~~~~~ 122 (496)
....|.++++....| .++-+|. +.. ...+.|--+.++..+.+++|++|+++.-. +++.+......|
T Consensus 359 vgk~~s~lyHS~ciW---~Ve~~p~nv~~---~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y 432 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIW---DVENLPCNVHS---PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPY 432 (1080)
T ss_pred ccceeeeeeccceee---eeccccccccC---cccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCcc
Confidence 455899999999999 6776663 222 22355666777888999999999987621 111111100011
Q ss_pred Ccc-------cCCcccc--eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec
Q 010997 123 NEE-------ARSPFVK--KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 193 (496)
Q Consensus 123 ~~~-------~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~ 193 (496)
... ...+.+. ...+..-.-.|.+++.+| +++.||+|..-|+++||++... +....+..
T Consensus 433 ~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l------------~~~~~~eA 499 (1080)
T KOG1408|consen 433 EDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQEL------------EYTCFMEA 499 (1080)
T ss_pred ccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhh------------hhhhheec
Confidence 111 1112221 223445567899999999 9999999999999999999887 56677889
Q ss_pred CCCCcceeeeecCC---CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 194 HQDNAEFALAMCPT---EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 194 h~~~~v~~l~~~p~---~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
|.. .|.||.|+.- .++|+++++|+-|.|+|+.. ...+
T Consensus 500 Hes-EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---------------------------------------ny~l 539 (1080)
T KOG1408|consen 500 HES-EILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---------------------------------------NYDL 539 (1080)
T ss_pred ccc-eeEEEeecCchhhhHhhhhccCCceEEEEeccc---------------------------------------ccch
Confidence 988 6999999853 46899999999999999863 3345
Q ss_pred eeeeecCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCccceee---eccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997 271 RGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~i~~sp~~~~~l~sgs~dg 346 (496)
++++.+|...|+++.|...| ...+++++.|..|.+--.+......+.. .......++.++..| +..++++++.|.
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDR 618 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEeccc
Confidence 57889999999999997765 3468899999887664333221111111 112235789999999 899999999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEecc---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (496)
.|+|||+.+ ++....|++ |.+....+...|.|-| +|+.+.|.++.++|+..+ +++
T Consensus 619 nirif~i~s------gKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sg---------------Ecv 676 (1080)
T KOG1408|consen 619 NIRIFDIES------GKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSG---------------ECV 676 (1080)
T ss_pred ceEEEeccc------cceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccc---------------hhh
Confidence 999999999 888888864 6678889999999997 578888999999999885 677
Q ss_pred EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
....||...|+.+.|.++-..+| +.+.||.|.||.+..
T Consensus 677 A~m~GHsE~VTG~kF~nDCkHlI--------SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 677 AQMTGHSEAVTGVKFLNDCKHLI--------SVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhcCcchheeeeeecccchhhe--------eecCCceEEEEECch
Confidence 78899999999999999988877 555679999999984
No 109
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=187.10 Aligned_cols=304 Identities=21% Similarity=0.354 Sum_probs=220.5
Q ss_pred CcCCCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCC
Q 010997 61 HNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP 140 (496)
Q Consensus 61 ~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 140 (496)
+.-.||-+...|.-. .+.+.||.+|+.... -.|.+.|..+.. ... .+.....+.|+
T Consensus 41 Y~ap~~lya~~Ws~~-----~~~~~rla~gS~~Ee-~~Nkvqiv~ld~-----~s~-------------e~~~~a~fd~~ 96 (364)
T KOG0290|consen 41 YNAPWPLYAMNWSVR-----PDKKFRLAVGSFIEE-YNNKVQIVQLDE-----DSG-------------ELVEDANFDHP 96 (364)
T ss_pred ecCCCceeeeccccC-----CCcceeEEEeeeccc-cCCeeEEEEEcc-----CCC-------------ceeccCCCCCC
Confidence 456689999999754 233479999987654 457777766531 000 11122337899
Q ss_pred CceeEEEecCCC----CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe----cCCCCcceeeeecCC-CCce
Q 010997 141 GEVNRIRELPQN----TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT----GHQDNAEFALAMCPT-EPYV 211 (496)
Q Consensus 141 ~~V~~l~~~p~~----~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~----~h~~~~v~~l~~~p~-~~~l 211 (496)
-+++.+.|.|+. +++|||.+. .+++|.+....... .+...+. .+-..++++..|+.- -++|
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~--------~~~~~L~~~kns~~~aPlTSFDWne~dp~~i 166 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRV--------ELQSVLNNNKNSEFCAPLTSFDWNEVDPNLI 166 (364)
T ss_pred CCccceEecCCccccCcchhhcccC--eEEEEeccCcCCce--------ehhhhhccCcccccCCcccccccccCCccee
Confidence 999999999932 367887654 89999998542221 1122222 222337899999874 5588
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
.+++-|-+..|||++++.. ......+-.|..+|.+++|...+.
T Consensus 167 gtSSiDTTCTiWdie~~~~-------------------------------------~~vkTQLIAHDKEV~DIaf~~~s~ 209 (364)
T KOG0290|consen 167 GTSSIDTTCTIWDIETGVS-------------------------------------GTVKTQLIAHDKEVYDIAFLKGSR 209 (364)
T ss_pred EeecccCeEEEEEEeeccc-------------------------------------cceeeEEEecCcceeEEEeccCcc
Confidence 8999999999999987521 111255778999999999999888
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEec
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
++|+++|.||.|++||+|......+...... ..+...++|++++.+++|+-..| ..|.|.|+|.+ ..++..++
T Consensus 210 ~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-----~tpva~L~ 284 (364)
T KOG0290|consen 210 DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-----CTPVARLR 284 (364)
T ss_pred ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-----Ccceehhh
Confidence 8999999999999999998762222221222 57889999999899999997766 47999999986 48899999
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
+|.+.|+.++|.|.....++|+++|..+.|||+.....+.. ..+.+.+. -.+.|+.++|++..+.-++.|
T Consensus 285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~-------~dPilay~---a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG-------EDPILAYT---AGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred cCcccccceEecCCCCceeeecCCcceEEEEecccccccCC-------CCchhhhh---ccceeeeeeecccCCCEEEEE
Confidence 99999999999999888899999999999999988644111 11222222 345799999998766666555
Q ss_pred c
Q 010997 450 S 450 (496)
Q Consensus 450 s 450 (496)
.
T Consensus 355 ~ 355 (364)
T KOG0290|consen 355 F 355 (364)
T ss_pred e
Confidence 4
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4e-27 Score=223.26 Aligned_cols=232 Identities=20% Similarity=0.384 Sum_probs=205.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
+...|...|.|+..-. ..+.+++|+.|-.+-+|.+... .++..|.+|.. +|.+|.|++...+|++|
T Consensus 23 ~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp------------~~i~S~~~hes-pIeSl~f~~~E~Llaag 88 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKP------------NAITSLTGHES-PIESLTFDTSERLLAAG 88 (825)
T ss_pred hhhhhhhhhceeeeec-cceeeccCCCceeeccccccCC------------chhheeeccCC-cceeeecCcchhhhccc
Confidence 4567999999999844 7889999999999999998876 56667899998 79999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.+|+|++||++... .++.+.+|...+..+.|+|.+ .++
T Consensus 89 sasgtiK~wDleeAk----------------------------------------~vrtLtgh~~~~~sv~f~P~~-~~~ 127 (825)
T KOG0267|consen 89 SASGTIKVWDLEEAK----------------------------------------IVRTLTGHLLNITSVDFHPYG-EFF 127 (825)
T ss_pred ccCCceeeeehhhhh----------------------------------------hhhhhhccccCcceeeeccce-EEe
Confidence 999999999998543 236788999999999999999 788
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
++|+.|+.+++||++... +.+.+.+|...|.++.|+| +|.+++.|+.|.+++|||+.. +..+..|..|.+.
T Consensus 128 a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHEGK 198 (825)
T ss_pred ccccccccceehhhhccC--ceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccc------ccccccccccccc
Confidence 999999999999999766 6788888999999999999 999999999999999999998 8999999999999
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
|..+.|+|..- ++++|+.|++|++||+++. +++.........|.+.+|+|++..++
T Consensus 199 v~sle~hp~e~-Lla~Gs~d~tv~f~dletf---------------e~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 199 VQSLEFHPLEV-LLAPGSSDRTVRFWDLETF---------------EVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred ccccccCchhh-hhccCCCCceeeeecccee---------------EEeeccCCccCCceeeeecCCceeee
Confidence 99999999875 7899999999999999974 55665666677899999999886544
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.5e-26 Score=212.70 Aligned_cols=284 Identities=20% Similarity=0.284 Sum_probs=216.4
Q ss_pred CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~ 173 (496)
+|+.+..|.+|+...... +...| -..+...|.+.|+.+.... +++.|++++.|-+|++|+....
T Consensus 42 TgGRDg~i~~W~~~~d~~-------------~~s~~--~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSN-------------EPSTP--YIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred ecCCCceEEEeccccccC-------------Ccccc--hhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccC
Confidence 345788899998653221 00011 1334557999999999888 8889999999999999999876
Q ss_pred CCccccCCCCCCCCceEEecCCCCcceeeee-cCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAM-CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~-~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
. .-+..+++.|.+ -|.|+++ .++...+||||-|+.|.+||++++........
T Consensus 106 ~----------~~c~stir~H~D-YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~---------------- 158 (735)
T KOG0308|consen 106 N----------TFCMSTIRTHKD-YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF---------------- 158 (735)
T ss_pred c----------chhHhhhhcccc-hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc----------------
Confidence 1 245567889998 7999999 77888999999999999999997633111100
Q ss_pred CCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997 253 PKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331 (496)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 331 (496)
.......+. ++...|++++.++.+ .+|++|+..+.|++||.++.+ .+..+.+|...|.++..
T Consensus 159 --------------n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 159 --------------NNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLV 221 (735)
T ss_pred --------------cccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc--ceeeeeccccceEEEEE
Confidence 000112222 788999999999998 899999999999999999988 56667799999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411 (496)
Q Consensus 332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~ 411 (496)
++ +|..++++++||+|++||+.. .+++.++..|...|.++..+|+-..+ .+|+.||.|..=|++...+.
T Consensus 222 ~d-DGt~~ls~sSDgtIrlWdLgq------QrCl~T~~vH~e~VWaL~~~~sf~~v-YsG~rd~~i~~Tdl~n~~~~--- 290 (735)
T KOG0308|consen 222 ND-DGTRLLSASSDGTIRLWDLGQ------QRCLATYIVHKEGVWALQSSPSFTHV-YSGGRDGNIYRTDLRNPAKS--- 290 (735)
T ss_pred cC-CCCeEeecCCCceEEeeeccc------cceeeeEEeccCceEEEeeCCCcceE-EecCCCCcEEecccCCchhh---
Confidence 99 999999999999999999999 79999999999999999999998865 59999999999999885221
Q ss_pred CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.+++ ....+|..+..+.....+= ++..|+.|+-|...
T Consensus 291 ---------tlic---k~daPv~~l~~~~~~~~~W--------vtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 291 ---------TLIC---KEDAPVLKLHLHEHDNSVW--------VTTTDSSIKRWKLE 327 (735)
T ss_pred ---------eEee---cCCCchhhhhhccccCCce--------eeeccccceecCCc
Confidence 2222 2234566666654333322 22345777777665
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=9.3e-26 Score=192.55 Aligned_cols=234 Identities=24% Similarity=0.417 Sum_probs=179.7
Q ss_pred ecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 192 TGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 192 ~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
+.|.+ .|++|...+. |+|+++|+.||.|.+||+++......... + .+....-.
T Consensus 40 r~HgG-svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l------------i-------------~k~~c~v~ 93 (397)
T KOG4283|consen 40 RPHGG-SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL------------I-------------AKHKCIVA 93 (397)
T ss_pred ccCCC-ccceeeeccccceEEeecCCCccEEEEEeccccchhhccc------------e-------------eheeeecc
Confidence 34555 6899999885 88999999999999999986431110000 0 00000001
Q ss_pred eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--CCcEEEEEcCCCcE
Q 010997 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADNSV 348 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~dg~i 348 (496)
...-.+|.-.|.++.|-|.+..+|.+++.|.++++||..+.+ ....+ ..++.|++-+++|- ..-++|+|..|-.|
T Consensus 94 ~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ--~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 94 KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ--EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce--eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcE
Confidence 123357889999999999877899999999999999998877 34444 56788999999883 24578999999999
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCccc-CCCCCCCCCCCeeEEEec
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV-EQGPRTTNYPAGLFFQHA 427 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~ 427 (496)
++-|+.+ +..-+++.+|...|.+|.|+|...++||+|+.||.|++||++...... ..+.... ..+..+....
T Consensus 171 rLCDi~S------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~ 243 (397)
T KOG4283|consen 171 RLCDIAS------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNT 243 (397)
T ss_pred EEEeccC------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccc
Confidence 9999999 899999999999999999999999999999999999999999863322 2222221 2223333567
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.|.+.|+.++|..++.+++ +.|.|..+++|+...
T Consensus 244 ah~gkvngla~tSd~~~l~--------~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLA--------SCGTDDRIRVWNMES 277 (397)
T ss_pred cccceeeeeeecccchhhh--------hccCccceEEeeccc
Confidence 8999999999999999877 777789999999874
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.8e-26 Score=197.05 Aligned_cols=226 Identities=19% Similarity=0.344 Sum_probs=173.9
Q ss_pred ceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 188 ~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
...+..|.. ++.+.+|+|||.++++|+.|.+|+|.|++...... .+.... ..+...
T Consensus 105 t~ylt~HK~-~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~em~---------------------~~~~qa 160 (430)
T KOG0640|consen 105 TKYLTSHKS-PCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPKEMI---------------------SGDTQA 160 (430)
T ss_pred eEEEeeccc-ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chhhhc---------------------cCCccc
Confidence 346778887 78999999999999999999999999998432211 000000 000111
Q ss_pred c-CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997 268 V-GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 268 ~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg 346 (496)
. ..++++-.|.++|+++.|+|.. .+|++|+.|++|+++|+................+|.++.|+| .|.+|+.|..-.
T Consensus 161 ~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp 238 (430)
T KOG0640|consen 161 RHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHP 238 (430)
T ss_pred CCceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCC
Confidence 1 2357888999999999999998 899999999999999997654211112224567899999999 999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEe---ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997 347 SVRMFDRRNLTSNGVGSPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~---~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (496)
++++||+.+ .++...- .+|++.|+++.+++.+. |+++|+.||.|+|||--.. ++ +
T Consensus 239 ~~rlYdv~T------~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~-rC--------------v 296 (430)
T KOG0640|consen 239 TLRLYDVNT------YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSN-RC--------------V 296 (430)
T ss_pred ceeEEeccc------eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccH-HH--------------H
Confidence 999999998 4444332 56999999999999998 7899999999999997663 22 1
Q ss_pred EEe-cCCC-CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 424 FQH-AGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 424 ~~~-~~h~-~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
..+ ..|. ..|.+..|..++.+++ |.|.|..+++|.+..
T Consensus 297 ~t~~~AH~gsevcSa~Ftkn~kyiL--------sSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 297 RTIGNAHGGSEVCSAVFTKNGKYIL--------SSGKDSTVKLWEIST 336 (430)
T ss_pred HHHHhhcCCceeeeEEEccCCeEEe--------ecCCcceeeeeeecC
Confidence 111 2344 3688999999999988 888899999999983
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3e-26 Score=208.70 Aligned_cols=272 Identities=20% Similarity=0.360 Sum_probs=214.7
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-CCCcceeeeecCCCCc
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCPTEPY 210 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-~~~~v~~l~~~p~~~~ 210 (496)
+.+.++.|..-|.++..+. ..+.+.||+. |.|+|||+....++ .|+..|..- .++-|.++.+.|||+.
T Consensus 411 rq~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k---------~PvsqLdcl~rdnyiRSckL~pdgrt 479 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNK---------SPVSQLDCLNRDNYIRSCKLLPDGRT 479 (705)
T ss_pred HhhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCC---------CccccccccCcccceeeeEecCCCce
Confidence 4567789999999999888 6678889876 79999999876433 233333322 2346889999999999
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|++|+.-.++.|||+....... ...+..-.-.+.+++.+||.
T Consensus 480 LivGGeastlsiWDLAapTpri--------------------------------------kaeltssapaCyALa~spDa 521 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPRI--------------------------------------KAELTSSAPACYALAISPDA 521 (705)
T ss_pred EEeccccceeeeeeccCCCcch--------------------------------------hhhcCCcchhhhhhhcCCcc
Confidence 9999999999999997543211 12223333467889999998
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
++.++|+.||.|.|||+++.. .+..+.+|.+.+.||.+++ ++..|-||+.|.+||.||+|. +..+....
T Consensus 522 -kvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlre------grqlqqhd- 590 (705)
T KOG0639|consen 522 -KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLRE------GRQLQQHD- 590 (705)
T ss_pred -ceeeeeccCCcEEEEEcccce--eeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhh------hhhhhhhh-
Confidence 789999999999999999887 7889999999999999999 999999999999999999998 55555443
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
..+.|.++..+|++.++ |.|-+++.+-|-..... -.+.+.-|.+-|.++.|.+.|.|++
T Consensus 591 F~SQIfSLg~cP~~dWl-avGMens~vevlh~skp----------------~kyqlhlheScVLSlKFa~cGkwfv---- 649 (705)
T KOG0639|consen 591 FSSQIFSLGYCPTGDWL-AVGMENSNVEVLHTSKP----------------EKYQLHLHESCVLSLKFAYCGKWFV---- 649 (705)
T ss_pred hhhhheecccCCCccce-eeecccCcEEEEecCCc----------------cceeecccccEEEEEEecccCceee----
Confidence 46789999999999985 68988998888777663 2334567889999999999999988
Q ss_pred CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
|.|.|+.+..|... .|..+...+ -..+|++|+.|
T Consensus 650 ----StGkDnlLnawrtP------yGasiFqsk-E~SsVlsCDIS 683 (705)
T KOG0639|consen 650 ----STGKDNLLNAWRTP------YGASIFQSK-ESSSVLSCDIS 683 (705)
T ss_pred ----ecCchhhhhhccCc------cccceeecc-ccCcceeeeec
Confidence 78888999999987 455444444 24567776654
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-23 Score=181.90 Aligned_cols=240 Identities=20% Similarity=0.293 Sum_probs=188.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
+.-.|..++|..... .++.++. |.+|+.-++.+. +.+..+.||.. .|.+|+.+|-+..++|++.
T Consensus 55 kkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dN------------kylRYF~GH~~-~V~sL~~sP~~d~FlS~S~ 120 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDN------------KYLRYFPGHKK-RVNSLSVSPKDDTFLSSSL 120 (311)
T ss_pred ccccccEEEEecCCc-eEEEccCCCCCceEEEEeecC------------ceEEEcCCCCc-eEEEEEecCCCCeEEeccc
Confidence 344688888877444 4444444 789999999988 78899999998 7999999999999999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
|++|++||++...+. ..+ +...-..++|.|+| -+||+
T Consensus 121 D~tvrLWDlR~~~cq----------------------------------------g~l--~~~~~pi~AfDp~G-LifA~ 157 (311)
T KOG1446|consen 121 DKTVRLWDLRVKKCQ----------------------------------------GLL--NLSGRPIAAFDPEG-LIFAL 157 (311)
T ss_pred CCeEEeeEecCCCCc----------------------------------------eEE--ecCCCcceeECCCC-cEEEE
Confidence 999999999854332 111 11223456899999 78888
Q ss_pred EcCCCeEEEEEccCCCccceeeec---cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
+.....|++||+|.-......++. +.....+.|.|+| +|.+|+.++..+.+++.|.-. |....++..+..
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~------G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFD------GTVKSTFSGYPN 230 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccC------CcEeeeEeeccC
Confidence 888889999999987533333332 3467899999999 999999999999999999988 888888887654
Q ss_pred CE---EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEEEe
Q 010997 374 AV---LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 374 ~i---~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~s~ 449 (496)
.- ....|+|+++++| +|+.||+|++|+++++ ..+..+.+ +..++.++.|+|.. .++||+
T Consensus 231 ~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~tg---------------~~v~~~~~~~~~~~~~~~fnP~~-~mf~sa 293 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLETG---------------KKVAVLRGPNGGPVSCVRFNPRY-AMFVSA 293 (311)
T ss_pred CCCcceeEEECCCCcEEE-EecCCCcEEEEEcCCC---------------cEeeEecCCCCCCccccccCCce-eeeeec
Confidence 32 6889999999755 9999999999999875 34445556 78899999999954 455554
Q ss_pred cCCCCCCCCCCeEEEeecC
Q 010997 450 SDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~ 468 (496)
+ ..+-+|=+.
T Consensus 294 ~---------s~l~fw~p~ 303 (311)
T KOG1446|consen 294 S---------SNLVFWLPD 303 (311)
T ss_pred C---------ceEEEEecc
Confidence 4 578999776
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3e-25 Score=209.82 Aligned_cols=257 Identities=19% Similarity=0.347 Sum_probs=206.2
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCccee-eeecC-CCCceE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA-LAMCP-TEPYVL 212 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~-l~~~p-~~~~l~ 212 (496)
...+|...|..+++.+ +-.+++++.||++++|+-... +......+.+|.+- |.. +++-+ ++..|+
T Consensus 9 ~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~----------~~l~~~~~~~~~g~-i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGK----------QYLETHAFEGPKGF-IANSICYAESDKGRLV 75 (745)
T ss_pred EeccCccchheeEecC--CeEEeecCCCCceeeeeccCc----------ccccceecccCcce-eeccceeccccCcceE
Confidence 4568999999988765 347889999999999997655 22334567778773 444 77775 344799
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.|++|.+|...+ ..|+..+.+|...|.++....++ .
T Consensus 76 ~g~~D~~i~v~~~~~----------------------------------------~~P~~~LkgH~snVC~ls~~~~~-~ 114 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQ----------------------------------------AEPLYTLKGHKSNVCSLSIGEDG-T 114 (745)
T ss_pred eecccceEEEEecCC----------------------------------------CCchhhhhccccceeeeecCCcC-c
Confidence 999999999998763 34568899999999999987777 3
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
+++||.|.++++|-... +.....+|...|.+++.-| .+ .++||+.|.+|++|.-. +.+.+|.+|.
T Consensus 115 -~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~~--------~~l~tf~gHt 179 (745)
T KOG0301|consen 115 -LISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKGG--------TLLKTFSGHT 179 (745)
T ss_pred -eEecccccceEEecchh----hhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccCC--------chhhhhccch
Confidence 99999999999997644 3455789999999999998 44 89999999999999753 6889999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
..|..+++-|++. |+|++.||.|++|++.. +.+..+.||+.-|++++..+++ .+++||++|
T Consensus 180 D~VRgL~vl~~~~--flScsNDg~Ir~w~~~g----------------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gED 240 (745)
T KOG0301|consen 180 DCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG----------------EVLLEMHGHTNFVYSISMALSD-GLIVSTGED 240 (745)
T ss_pred hheeeeEEecCCC--eEeecCCceEEEEeccC----------------ceeeeeeccceEEEEEEecCCC-CeEEEecCC
Confidence 9999999999976 45999999999999955 5788899999999999966644 467766665
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~ 494 (496)
++++||+.. ++.+.+.-....|+++.+
T Consensus 241 -------rtlriW~~~--------e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 241 -------RTLRIWKKD--------ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred -------ceEEEeecC--------ceEEEEecCccceEEEEE
Confidence 999999886 455555555556666654
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=9e-25 Score=206.61 Aligned_cols=241 Identities=19% Similarity=0.306 Sum_probs=199.2
Q ss_pred ceEEEecCCCceeE-EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 132 KKHKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 132 ~~~~~~~h~~~V~~-l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
+.+...+|.+-|.+ ++|.+.++-.+++|+.|.+|.+|.+... .|..+|.||.. -|.+++...++.
T Consensus 49 ~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~------------~P~~~LkgH~s-nVC~ls~~~~~~- 114 (745)
T KOG0301|consen 49 ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA------------EPLYTLKGHKS-NVCSLSIGEDGT- 114 (745)
T ss_pred cceecccCcceeeccceeccccCcceEeecccceEEEEecCCC------------Cchhhhhcccc-ceeeeecCCcCc-
Confidence 34456678888888 8888756667999999999999999888 88899999998 588998877776
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
++|||.|.++++|-.... ...+.+|...|+++..-|++
T Consensus 115 ~iSgSWD~TakvW~~~~l------------------------------------------~~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGEL------------------------------------------VYSLQGHTASVWAVASLPEN 152 (745)
T ss_pred eEecccccceEEecchhh------------------------------------------hcccCCcchheeeeeecCCC
Confidence 999999999999987532 24478999999999999987
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
.++|||.|.+|++|.- ++ ...++.+|.+.|..+++-+ ...|++++.||.|++|++. +..+.++.+
T Consensus 153 --~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-------ge~l~~~~g 217 (745)
T KOG0301|consen 153 --TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-------GEVLLEMHG 217 (745)
T ss_pred --cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEec--CCCeEeecCCceEEEEecc-------Cceeeeeec
Confidence 7999999999999975 33 6778889999999999987 5678999999999999995 689999999
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
|+.-|+++...+++. +++|+++|++++||+.... .....-....|+++.+-++|. ++
T Consensus 218 htn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e~-----------------~q~I~lPttsiWsa~~L~NgD-Iv---- 274 (745)
T KOG0301|consen 218 HTNFVYSISMALSDG-LIVSTGEDRTLRIWKKDEC-----------------VQVITLPTTSIWSAKVLLNGD-IV---- 274 (745)
T ss_pred cceEEEEEEecCCCC-eEEEecCCceEEEeecCce-----------------EEEEecCccceEEEEEeeCCC-EE----
Confidence 999999999666666 5789999999999997632 222222234788888888665 45
Q ss_pred CCCCCCCCCCeEEEeecCCC
Q 010997 451 DDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~ 470 (496)
+||.||.||||.....
T Consensus 275 ----vg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 275 ----VGGSDGRVRVFTVDKD 290 (745)
T ss_pred ----EeccCceEEEEEeccc
Confidence 5666799999998754
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=9.4e-25 Score=204.55 Aligned_cols=278 Identities=19% Similarity=0.312 Sum_probs=202.8
Q ss_pred EEecC--CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEE
Q 010997 146 IRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 223 (496)
Q Consensus 146 l~~~p--~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iw 223 (496)
..|++ ....+||.+..||.|.++|........ ..+.......|.+ +|+.+.|-|....|++++.|.++++|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~------ee~~lk~~~aH~n-AifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL------EERQLKKPLAHKN-AIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcch------hhhhhcccccccc-eeEeeccCCCceeEEEccCCceeeee
Confidence 45554 456799999999999999988763220 1122345677887 79999999966689999999999999
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeE
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 303 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 303 (496)
|+.+..... ...+.+|.+.|.+++|+|.++..|++|+.||.|
T Consensus 128 dvk~s~l~G--------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 128 DVKTSRLVG--------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI 169 (720)
T ss_pred eeccceeec--------------------------------------ceeecccccccchhhhccCCCcceeeccCCCcE
Confidence 998654321 135789999999999999999999999999999
Q ss_pred EEEEccCCCc----------------------c---ceeeeccCCCCeEE---EEecCCCCcEEEEEcC-CCcEEEEeCC
Q 010997 304 ILWDARVGTS----------------------P---VIKVEKAHDADLHC---VDWNPLDDNLILTGSA-DNSVRMFDRR 354 (496)
Q Consensus 304 ~iwd~~~~~~----------------------~---~~~~~~~~~~~v~~---i~~sp~~~~~l~sgs~-dg~i~iwd~~ 354 (496)
.|||+|.... + .+....++...|.+ +.+.. |...||+++. |+.|++||+|
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeec
Confidence 9999985431 0 01111234444444 44445 7889999888 9999999999
Q ss_pred CCCCCCCCCCceE--eccC---CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997 355 NLTSNGVGSPINK--FEGH---SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (496)
Q Consensus 355 ~~~~~~~~~~~~~--~~~h---~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 429 (496)
.........+... +..| ...+.++.....|.++||+|. |+.|++|++...+. ..++.+.|+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~-------------sP~~~~sg~ 314 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSI-------------SPVAEFSGK 314 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCc-------------CchhhccCc
Confidence 8654332333322 3333 346788888888999998887 99999999988432 233334444
Q ss_pred CCC--cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 430 RDK--VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 430 ~~~--V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
... -..-..+|++.+++ ||+.|...++|.+.. .......+.+|.-.|++|+|.|
T Consensus 315 ~~~sf~vks~lSpd~~~l~--------SgSsd~~ayiw~vs~-----~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLL--------SGSSDEQAYIWVVSS-----PEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred ccceeeeeeecCCCCceEe--------ccCCCcceeeeeecC-----ccCChhhhhCcceEEEEEeecc
Confidence 321 11234678888877 888889999999995 3566788899999999999987
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2e-24 Score=184.43 Aligned_cols=303 Identities=17% Similarity=0.222 Sum_probs=214.5
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCC---ceEEecCCCCcceeeeecCC-CCceE
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP---DLILTGHQDNAEFALAMCPT-EPYVL 212 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~l~~h~~~~v~~l~~~p~-~~~l~ 212 (496)
..|.|.|+.+...+..++++++|+.||.|.|||++.........-.....+ ...-.+|.- .|..+.|-|- ...+.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky-~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKY-AISSAIWYPIDTGMFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCcccee-eeeeeEEeeecCceee
Confidence 369999999999999999999999999999999987642211000000011 111235555 6889999995 45888
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCC----CCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAG----SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
+++.|.++++||.++.+....+......... -...-.....+..+..+.+.++..+...+++.+|.+.|.++.|+|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999987654433332221111 111112233455667788899999999999999999999999999
Q ss_pred CCCceEEEEcCCCeEEEEEccCCC-------------ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGT-------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
..+.+|++|+.||.|++||+|... .|......+|.+.|+.++|.. ++.++++.+.|..+++|+..+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeeccc
Confidence 998899999999999999998642 233333457889999999999 999999999999999999887
Q ss_pred CCCCC--CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997 356 LTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 433 (496)
Q Consensus 356 ~~~~~--~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 433 (496)
..... .+..++.-+.| -.+. +. +.+.. +|+---.++.+.++++-.+ ..+..+.+|...|
T Consensus 278 G~ntl~~~g~~~~n~~~~-~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sg---------------s~ir~l~~h~k~i 338 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTS-FAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEG---------------SFVRRLSTHLKRI 338 (397)
T ss_pred Cccccccccccccccccc-ceEE-Ee-ecccc-eEEEEecCCeEEEEEccCc---------------eEEEeeeccccee
Confidence 43210 01111111111 1111 22 22333 3433444688888888764 5666778888889
Q ss_pred ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.+.++-|+-.... +|..|+.|..|-+.
T Consensus 339 ~c~~~~~~fq~~~--------tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 339 NCAAYRPDFEQCF--------TGDMNGNIYMWSPA 365 (397)
T ss_pred eEEeecCchhhhh--------ccccCCcccccccc
Confidence 9999999877777 88899999999884
No 120
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=200.66 Aligned_cols=308 Identities=19% Similarity=0.311 Sum_probs=204.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ce
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YV 211 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l 211 (496)
....+.|.++|..+.|.| ....|++++.|.++++||+..... .-...+.||+. .|.+++|.|.+. .|
T Consensus 93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l----------~G~~~~~GH~~-SvkS~cf~~~n~~vF 160 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRL----------VGGRLNLGHTG-SVKSECFMPTNPAVF 160 (720)
T ss_pred hcccccccceeEeeccCC-CceeEEEccCCceeeeeeecccee----------ecceeeccccc-ccchhhhccCCCcce
Confidence 345678999999999999 888999999999999999998721 11224889998 689999999865 78
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE---EEEcc
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED---VTFCP 288 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---l~~~~ 288 (496)
++|++||.|.|||++-.................... ... .....+.+.....+...|.+ +.+..
T Consensus 161 ~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~--ptp-----------skp~~kr~~k~kA~s~ti~ssvTvv~fk 227 (720)
T KOG0321|consen 161 CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA--PTP-----------SKPLKKRIRKWKAASNTIFSSVTVVLFK 227 (720)
T ss_pred eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC--CCC-----------CchhhccccccccccCceeeeeEEEEEe
Confidence 999999999999997543111000000000000000 000 00001111222234444443 44445
Q ss_pred CCCceEEEEcC-CCeEEEEEccCCCccc------eeeeccC---CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 289 SSAQEFCSVGD-DSCLILWDARVGTSPV------IKVEKAH---DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 289 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~------~~~~~~~---~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
|. ..|++++. |+.|++||+|...... ...+.-| ...+.++..+. .|.+|.+.+.|+.|.+||++...
T Consensus 228 De-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s- 304 (720)
T KOG0321|consen 228 DE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLS- 304 (720)
T ss_pred cc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccC-
Confidence 55 67888887 9999999999865211 1111122 34677888877 67777666679999999999876
Q ss_pred CCCCCCceEeccCCCC--EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997 359 NGVGSPINKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 436 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~--i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 436 (496)
..++..+.++... -..-..+|++.++ ++|+.|....+|.+.... .....+.||.-.|+.+
T Consensus 305 ---~sP~~~~sg~~~~sf~vks~lSpd~~~l-~SgSsd~~ayiw~vs~~e--------------~~~~~l~Ght~eVt~V 366 (720)
T KOG0321|consen 305 ---ISPVAEFSGKLNSSFYVKSELSPDDCSL-LSGSSDEQAYIWVVSSPE--------------APPALLLGHTREVTTV 366 (720)
T ss_pred ---cCchhhccCcccceeeeeeecCCCCceE-eccCCCcceeeeeecCcc--------------CChhhhhCcceEEEEE
Confidence 4566666655432 1233568999975 699999999999998742 2233467999999999
Q ss_pred EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC--------chHHHHHHHhccceEEEec
Q 010997 437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP--------QDEVLAELEKFKAHVISCT 493 (496)
Q Consensus 437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~--------~~~~~~~l~~h~~~v~~~~ 493 (496)
+|.|....-+++|++| .+++||++.+.+... ......++++|.-.+..+.
T Consensus 367 ~w~pS~~t~v~TcSdD-------~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ 424 (720)
T KOG0321|consen 367 RWLPSATTPVATCSDD-------FRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVN 424 (720)
T ss_pred eeccccCCCceeeccC-------cceEEEeccCchhhccccccchhhhhhhhhhhcccccccccc
Confidence 9999877778887776 999999997553321 2345566677765554443
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=8.8e-25 Score=192.62 Aligned_cols=230 Identities=18% Similarity=0.363 Sum_probs=178.8
Q ss_pred EEecCCCCcceeeeecCCCC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 190 ILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 190 ~l~~h~~~~v~~l~~~p~~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
...+|.+ .++-+.-.+-++ +.++=+..|.|.||++........... .......
T Consensus 146 ~~i~h~g-~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------------------------~~~~~s~ 200 (440)
T KOG0302|consen 146 KSIPHYG-GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPG------------------------LEVKDSE 200 (440)
T ss_pred ccccccc-ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcc------------------------ccccccc
Confidence 3445665 567777666544 666667899999999975432211110 0001145
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg 346 (496)
.+++.++.+|...=..++|+|.....+++|..-+.|++|...++.... ...+.+|+..|-.++|||....+||+||.||
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence 678899999999999999999654569999889999999998876321 2234579999999999998789999999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (496)
+|+|||+|... .+.....+.|.+.|+.|.|+.... +||+|+.||+++|||++.. ...+.+..+
T Consensus 281 sIrIWDiRs~~----~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~------------~~~~pVA~f 343 (440)
T KOG0302|consen 281 SIRIWDIRSGP----KKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQF------------KSGQPVATF 343 (440)
T ss_pred eEEEEEecCCC----ccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhc------------cCCCcceeE
Confidence 99999999842 233444588999999999999888 7899999999999999986 333567778
Q ss_pred cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.-|..+|+++.|+|....+++++ |.|+.|.|||++
T Consensus 344 k~Hk~pItsieW~p~e~s~iaas-------g~D~QitiWDls 378 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAAS-------GEDNQITIWDLS 378 (440)
T ss_pred EeccCCeeEEEeccccCceEEec-------cCCCcEEEEEee
Confidence 88999999999999988888754 445999999997
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-24 Score=185.28 Aligned_cols=280 Identities=13% Similarity=0.161 Sum_probs=206.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..++.|.. -+|+.|++ .|.+||.|+.||.|.|||+.+. .+-..+.+|.. +|.+++|+++|+.|+|
T Consensus 18 ~~tld~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~------------~iar~lsaH~~-pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 18 THTLDNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTF------------RIARMLSAHVR-PITSLCWSRDGRKLLT 82 (405)
T ss_pred ceeccCCc-cceEEecc-CcceeeeeccCCcEEEEEcccc------------chhhhhhcccc-ceeEEEecCCCCEeee
Confidence 34455555 89999999 9999999999999999999988 55668889998 8999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
+|.|..|.+||+..+.. ++.+ ....+|+.+.|+|...+.
T Consensus 83 sS~D~si~lwDl~~gs~----------------------------------------l~ri-rf~spv~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSP----------------------------------------LKRI-RFDSPVWGAQWHPRKRNK 121 (405)
T ss_pred ecCCceeEEEeccCCCc----------------------------------------eeEE-EccCccceeeeccccCCe
Confidence 99999999999986532 1222 246789999999988777
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
++++-.+..-.+-++..+...++-.-. .......+..|.+ .|.++++|...|.+.++|..+ .+++..++-.
T Consensus 122 ~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t------~e~vas~rit 194 (405)
T KOG1273|consen 122 CVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAET------LECVASFRIT 194 (405)
T ss_pred EEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecch------heeeeeeeec
Confidence 777666666666666543311111100 0111223446888 899999999999999999999 6788888766
Q ss_pred C-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC--CCCCcceEEecCCCCcEEEE
Q 010997 372 S-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 372 ~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~l~~s 448 (496)
. ..|.++.|+..|++ |+.-+.|+.|+.|+++....+-. ....++...+.. ....-.+++|+.+|.+++|+
T Consensus 195 s~~~IK~I~~s~~g~~-liiNtsDRvIR~ye~~di~~~~r------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRF-LIINTSDRVIRTYEISDIDDEGR------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred hheeeeEEEEeccCcE-EEEecCCceEEEEehhhhcccCc------cCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 5 78999999999996 56888899999999874311100 011111111110 11234578899999998876
Q ss_pred ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc-ceEEEeccCC
Q 010997 449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK-AHVISCTSKP 496 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~sP 496 (496)
.+. -..++||.-. .|.+++.|.|.+ ....+++|+|
T Consensus 268 s~~-------aHaLYIWE~~------~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 268 SAR-------AHALYIWEKS------IGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred ccc-------ceeEEEEecC------CcceeeeecCCchhheeeccccc
Confidence 543 4899999998 788999998888 4577888887
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=193.80 Aligned_cols=267 Identities=13% Similarity=0.245 Sum_probs=206.7
Q ss_pred cEEEEE-eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997 154 KIVATH-TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (496)
Q Consensus 154 ~~lat~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~ 232 (496)
.+++++ .....|.+|.+....... ....++ ++|.+++-+|+|.+|+.|+..|.|.+|.+.++..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~---------q~~v~P----g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-- 115 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV---------QYIVLP----GPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-- 115 (476)
T ss_pred hheeeecccCccccccccCchhhhh---------hhcccc----cceeeeecCCCceEEEeecccCcEEEEEeccccH--
Confidence 344444 345589999988762111 011122 2689999999999999998999999999987644
Q ss_pred cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC-
Q 010997 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG- 311 (496)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~- 311 (496)
+..+..|-..|+++.|+-++ .+|+|||.||.|++|++..-
T Consensus 116 --------------------------------------L~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 116 --------------------------------------LNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred --------------------------------------HHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeec
Confidence 35667899999999999998 79999999999999987431
Q ss_pred ------CccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997 312 ------TSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (496)
Q Consensus 312 ------~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~ 384 (496)
.......+..|.-+|+.+...+. ...+|+|+|.|.++++||+.. +..+.++. ....+.+++.+|-+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~-fp~si~av~lDpae 229 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTIT-FPSSIKAVALDPAE 229 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEe-cCCcceeEEEcccc
Confidence 22346677899999999998772 357899999999999999998 77777776 57789999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcccC-CCCCCCCCCCeeEEEecCCCC--CcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997 385 SSVFGSSAEDGLLNIWDYEKVGKKVE-QGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGT 461 (496)
Q Consensus 385 ~~llas~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~ 461 (496)
..+ ..|+.+|.|.+.++........ ............+..+.||.+ .|++++.+-+|..|+ ||+.||.
T Consensus 230 ~~~-yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl--------SGd~dg~ 300 (476)
T KOG0646|consen 230 RVV-YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL--------SGDEDGK 300 (476)
T ss_pred cEE-EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE--------eeCCCCC
Confidence 865 4899999999999876431110 001111122345666789998 999999999887666 7777899
Q ss_pred EEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 462 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 462 i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|+|||+. +.++++++....++|+-+.+.|
T Consensus 301 VcvWdi~------S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 301 VCVWDIY------SKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred EEEEecc------hHHHHHHHhhhccccceeEeec
Confidence 9999999 8999999998889999888744
No 124
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=181.72 Aligned_cols=296 Identities=17% Similarity=0.235 Sum_probs=202.1
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCc-eEEe-cCCCCcceeeeecCCCC-ce
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPD-LILT-GHQDNAEFALAMCPTEP-YV 211 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~l~-~h~~~~v~~l~~~p~~~-~l 211 (496)
.+.+|.++|++++|+. +|+.|||++.|++|+||++.....+.- +++ ..++ +| -+.+.|.||-+ .+
T Consensus 81 ~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eH-------r~~R~nve~dh----pT~V~FapDc~s~v 148 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEH-------RCIRQNVEYDH----PTRVVFAPDCKSVV 148 (420)
T ss_pred hhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhh-------hHhhccccCCC----ceEEEECCCcceEE
Confidence 4458999999999999 999999999999999999987532211 111 1111 23 26889999966 66
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
+++-...++++|.+........... .........-..|+-.|-++-....+
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~----------------------------~v~~D~~~f~~kh~v~~i~iGiA~~~- 199 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHH----------------------------FVHIDNLEFERKHQVDIINIGIAGNA- 199 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcc----------------------------cccccccccchhcccceEEEeecCCc-
Confidence 6777778999998764322000000 00000011223466667677666555
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC--CCCCceEec
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINKFE 369 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~~~~~~ 369 (496)
.++++++.|..|.||+++ ++ .+.........-+..+.+| +|+++|+++-.-.|++|.+--...+. ....+..++
T Consensus 200 k~imsas~dt~i~lw~lk-Gq--~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQ--LLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred eEEEEecCCCcEEEEecC-Cc--eeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 899999999999999998 55 4555545555667788999 99999999999999999865322211 134567889
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC-CCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
+|...|..++|+|+... +++.+.||.++|||+.-.-+. ..++.. ..++ .+.+..-..++ .+..+|++..|++|
T Consensus 276 GH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdVrY~~-~qDpk~Lk~g~---~pl~aag~~p~-RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDVRYEA-GQDPKILKEGS---APLHAAGSEPV-RLELSPSGDSLAVS 349 (420)
T ss_pred cchhheeeeeeCCCcce-eEEEecCCcEEEeeccceEec-CCCchHhhcCC---cchhhcCCCce-EEEeCCCCcEEEee
Confidence 99999999999999986 469999999999998753111 111100 0011 11111122233 89999999887776
Q ss_pred ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEeccCC
Q 010997 449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP 496 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~sP 496 (496)
.+ ..|+++..+ .++...++ ..|.+.|.+++|+|
T Consensus 350 ~g---------s~l~~~~se------~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 350 FG---------SDLKVFASE------DGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred cC---------CceEEEEcc------cCccchhHHHhhcCceeeEEecC
Confidence 55 469999888 45555555 46889999999986
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=205.01 Aligned_cols=261 Identities=18% Similarity=0.340 Sum_probs=204.5
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+|++.-+.|+|.| ++.+|.+++.||.|++|+...... .|.. +..+.. .|.+++- .+++|++|+.
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e----------~P~t-i~~~g~-~v~~ia~--~s~~f~~~s~ 74 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEE----------EPET-IDISGE-LVSSIAC--YSNHFLTGSE 74 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCccc----------CCch-hhccCc-eeEEEee--cccceEEeec
Confidence 58999999999999 888999999999999999876621 1111 111433 4666655 5669999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
+++|.++.+..+... ..+....-++++++|+.+| .+++.
T Consensus 75 ~~tv~~y~fps~~~~----------------------------------------~iL~Rftlp~r~~~v~g~g-~~iaa 113 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEED----------------------------------------TILARFTLPIRDLAVSGSG-KMIAA 113 (933)
T ss_pred cceEEEeeCCCCCcc----------------------------------------ceeeeeeccceEEEEecCC-cEEEe
Confidence 999999998754321 2445566789999999998 79999
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc------
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG------ 370 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~------ 370 (496)
||+|-.|++-++.... ....+.+|..+|.++.|+| .+++||+.+.||.|++||+.+ +....++.+
T Consensus 114 gsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~------~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 114 GSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQD------GILSKTLTGVDKDNE 184 (933)
T ss_pred ecCceeEEEEeccccc--hheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEccc------chhhhhcccCCcccc
Confidence 9999999999998877 6777889999999999999 999999999999999999998 555555432
Q ss_pred --CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe--cCCCCCcceEEecCCCCcEE
Q 010997 371 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 371 --h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~p~~~~l~ 446 (496)
....+..++|+|++..+ +..+.|+.|++|+...+ ...+.+ ..|...+.+++|+|+|.|++
T Consensus 185 ~~~s~i~~~~aW~Pk~g~l-a~~~~d~~Vkvy~r~~w---------------e~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTL-AVPPVDNTVKVYSRKGW---------------ELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred ccccceeeeeeecCCCCeE-EeeccCCeEEEEccCCc---------------eeheeecccccccceEEEEEcCCCcEEe
Confidence 14567889999998765 46667999999999885 233333 23445599999999999877
Q ss_pred EEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 447 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+++.||.|.|||.. + +.+ ......|.+++|.|
T Consensus 249 --------As~~~g~I~vWnv~------t---~~~-~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 249 --------ASTLDGQILVWNVD------T---HER-HEFKRAVCCEAWKP 280 (933)
T ss_pred --------eeccCCcEEEEecc------c---chh-ccccceeEEEecCC
Confidence 56678999999998 3 111 33456899999987
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4e-26 Score=216.52 Aligned_cols=243 Identities=21% Similarity=0.392 Sum_probs=204.4
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccC
Q 010997 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT 234 (496)
Q Consensus 155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~ 234 (496)
+++....+-.++|||.... ..|.. .|.++..-..++.+++|+.|-.+-+|.+....
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~------------------~~hsa-av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----- 61 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREF------------------VAHSA-AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----- 61 (825)
T ss_pred ccceeeeeeccccccchhh------------------hhhhh-hhceeeeeccceeeccCCCceeeccccccCCc-----
Confidence 3444445556778877543 35665 57777776667899999999999999886422
Q ss_pred CccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc
Q 010997 235 DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 314 (496)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 314 (496)
.+..|.+|..+|.++.|++.. .+|++|+.+|+|++||+...+
T Consensus 62 -----------------------------------~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk-- 103 (825)
T KOG0267|consen 62 -----------------------------------AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK-- 103 (825)
T ss_pred -----------------------------------hhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--
Confidence 224588999999999999987 789999999999999999887
Q ss_pred ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (496)
Q Consensus 315 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d 394 (496)
.++++.+|...+.++.|+| -+.++|+|+.|+.+++||++. ..+.+.+.+|...|..+.|+|+|++ ++++++|
T Consensus 104 ~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed 175 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRW-VASGGED 175 (825)
T ss_pred hhhhhhccccCcceeeecc-ceEEeccccccccceehhhhc------cCceeeecCCcceeEEEeecCCCce-eeccCCc
Confidence 6778889999999999999 789999999999999999998 6899999999999999999999996 6899999
Q ss_pred CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC
Q 010997 395 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP 474 (496)
Q Consensus 395 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~ 474 (496)
..++|||+..+ .++..+.+|...|..+.|+|. .++++ +||.|++|++||+.
T Consensus 176 ~tvki~d~~ag---------------k~~~ef~~~e~~v~sle~hp~-e~Lla-------~Gs~d~tv~f~dle------ 226 (825)
T KOG0267|consen 176 NTVKIWDLTAG---------------KLSKEFKSHEGKVQSLEFHPL-EVLLA-------PGSSDRTVRFWDLE------ 226 (825)
T ss_pred ceeeeeccccc---------------ccccccccccccccccccCch-hhhhc-------cCCCCceeeeeccc------
Confidence 99999999875 566678899999999999995 45665 77778999999999
Q ss_pred chHHHHHHHhccceEEEeccCC
Q 010997 475 QDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 475 ~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+-+.+...+.....|.+++|.|
T Consensus 227 tfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 227 TFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred eeEEeeccCCccCCceeeeecC
Confidence 5666777777788899999876
No 127
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.1e-25 Score=219.22 Aligned_cols=259 Identities=17% Similarity=0.377 Sum_probs=203.8
Q ss_pred CCCceeEEEecCCCCc---EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEe
Q 010997 139 HPGEVNRIRELPQNTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSG 214 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~---~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg 214 (496)
-...-++++|.+.... +||.|..||.|.+||....... .....+.....|++ .|.+|.|++... +||+|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~------~~~~~la~~~~h~G-~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN------ASEEVLATKSKHTG-PVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccC------cchHHHhhhcccCC-ceeeeeccccCCceeecc
Confidence 3445688999884443 6999999999999998774111 12245567788988 799999999854 99999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.||.|.|||+.+........ -....+.|.+++|+..-..+|
T Consensus 136 a~~geI~iWDlnn~~tP~~~~--------------------------------------~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFTPG--------------------------------------SQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred CCCCcEEEeccCCcCCCCCCC--------------------------------------CCCCcccceEeccchhhhHHh
Confidence 999999999998643321110 112356899999998877899
Q ss_pred EEEcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCCceEecc
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
++++.+|.+.|||+|..+ +.+.. .......+..++|+|.+...|++++.|. .|.+||+|... .+++.+++
T Consensus 178 AS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~ 251 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEG 251 (1049)
T ss_pred hccCCCCCceeccccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----Cchhhhcc
Confidence 999999999999999886 23322 2222345789999996667777777664 79999999864 78889999
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
|...|.++.|++.+..+++|++.|++|.+|+..+. +.+..+....+.+.++.|+|..+.+++.++
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---------------Evl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---------------EVLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCc---------------eEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 99999999999998778889999999999999985 567777777789999999999998888665
Q ss_pred CCCCCCCCCCeEEEeecCCC
Q 010997 451 DDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~ 470 (496)
-| |.|.|+.+...
T Consensus 317 fd-------gkI~I~sl~~~ 329 (1049)
T KOG0307|consen 317 FD-------GKISIYSLQGT 329 (1049)
T ss_pred ec-------cceeeeeeecC
Confidence 55 99999999754
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=5.5e-24 Score=192.17 Aligned_cols=263 Identities=16% Similarity=0.228 Sum_probs=192.3
Q ss_pred ecCCCceeEEEecCCCC-cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEe
Q 010997 137 IIHPGEVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSG 214 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~-~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg 214 (496)
..|.+.|++++|+|... +++|+|..-|+|-+||+.+... ...-+..+..|.. +|.+|.|+|.+. .+++.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~-~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSG-PVSGLKFSPANTSQIYSS 253 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------ccCceEEeccCCc-cccceEecCCChhheeee
Confidence 45889999999999655 8999999999999999964321 1234567788887 799999999754 89999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
|.||+|++-|+++...... ..+..-...+.++.|+.+. ..+
T Consensus 254 SyDGtiR~~D~~~~i~e~v--------------------------------------~s~~~d~~~fs~~d~~~e~-~~v 294 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEV--------------------------------------LSLDTDNIWFSSLDFSAES-RSV 294 (498)
T ss_pred ccCceeeeeeecchhhHHH--------------------------------------hhcCccceeeeeccccCCC-ccE
Confidence 9999999999987543221 1111234456788888877 456
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
+.+..=|...+||+|+.... ...+.-|...|+.|+++|....+|||++.|++++|||+|++.... .++.....|...
T Consensus 295 l~~~~~G~f~~iD~R~~~s~-~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~--sp~lst~~Hrrs 371 (498)
T KOG4328|consen 295 LFGDNVGNFNVIDLRTDGSE-YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA--SPFLSTLPHRRS 371 (498)
T ss_pred EEeecccceEEEEeecCCcc-chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC--Ccceecccccce
Confidence 66666679999999998743 334457888999999999889999999999999999999976422 134445569999
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC-C--CcceEEecCCCCcEEEEecC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-D--KVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~--~V~~~~~~p~~~~l~~s~s~ 451 (496)
|.+..|||.+.. |+|.+.|..|+|||..-.+.. .++.....|.... . ......|.|+.. +++.+
T Consensus 372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~---------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg-- 438 (498)
T KOG4328|consen 372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK---------DEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVG-- 438 (498)
T ss_pred eeeeEEcCCCCc-eEeeccCCceEEeeccccccc---------CCccceeeccCcccccccchhheeCCCcc-EEEEe--
Confidence 999999999988 568889999999998521111 1122222232211 2 234568999655 45433
Q ss_pred CCCCCCCCCeEEEeecC
Q 010997 452 DCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~ 468 (496)
..-..|-|+|-.
T Consensus 439 -----~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 439 -----RYPRPIDVFDGN 450 (498)
T ss_pred -----ccCcceeEEcCC
Confidence 334678888887
No 129
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1e-24 Score=216.66 Aligned_cols=251 Identities=22% Similarity=0.395 Sum_probs=196.7
Q ss_pred EEecCCCCcceeeeecCCCCceEEec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 190 ILTGHQDNAEFALAMCPTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 190 ~l~~h~~~~v~~l~~~p~~~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
.+-+|.+..|++++.+|++..++||+ .||.++||+.+.-.... ...+..-
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------------------------~~~~~~l 58 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------------------------EEKNENL 58 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------------------------hhhhccc
Confidence 45577777899999999999999999 99999999976321100 0011112
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccC------C----------CccceeeeccCCCCeEEEEe
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV------G----------TSPVIKVEKAHDADLHCVDW 331 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~------~----------~~~~~~~~~~~~~~v~~i~~ 331 (496)
...+.....|.+.|+|+.|+|+| .+||+|++|+.|.||.... . .......+.+|...|..++|
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred chhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 34556778899999999999999 7999999999999999873 0 01245667899999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411 (496)
Q Consensus 332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~ 411 (496)
+| ++.+||+++.|++|.|||.++ ...+..+++|.+.|-.+.|.|-|+| ||+-+.|++|+||++...+-+...
T Consensus 138 sp-~~~~lvS~s~DnsViiwn~~t------F~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 138 SP-DDSLLVSVSLDNSVIIWNAKT------FELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred CC-CccEEEEecccceEEEEcccc------ceeeeeeecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEee
Confidence 99 999999999999999999999 7889999999999999999999996 689999999999998775332211
Q ss_pred CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEE
Q 010997 412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS 491 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~ 491 (496)
. -.|...+-......+.|+|+|.++++.-+ .-+.-.++.|.+-. +...-..|-||.+++..
T Consensus 210 t---------~pf~~~~~~T~f~RlSWSPDG~~las~nA----~n~~~~~~~IieR~------tWk~~~~LvGH~~p~ev 270 (942)
T KOG0973|consen 210 T---------KPFEESPLTTFFLRLSWSPDGHHLASPNA----VNGGKSTIAIIERG------TWKVDKDLVGHSAPVEV 270 (942)
T ss_pred c---------cchhhCCCcceeeecccCCCcCeecchhh----ccCCcceeEEEecC------CceeeeeeecCCCceEE
Confidence 1 01111222345788999999988765444 44555678887765 56666788999999999
Q ss_pred eccCC
Q 010997 492 CTSKP 496 (496)
Q Consensus 492 ~~~sP 496 (496)
++|+|
T Consensus 271 vrFnP 275 (942)
T KOG0973|consen 271 VRFNP 275 (942)
T ss_pred EEeCh
Confidence 99998
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=8.8e-23 Score=192.28 Aligned_cols=263 Identities=10% Similarity=0.110 Sum_probs=182.3
Q ss_pred ecCCCceeEEEecCCCCcE-EEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-Ee
Q 010997 137 IIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SG 214 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~-lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg 214 (496)
+.+...+..++|+| ++.. +++++.++.|++||+.++ +....+..+.. +..++|+|+++.++ ++
T Consensus 27 ~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~~--~~~~~~~~~g~~l~~~~ 91 (300)
T TIGR03866 27 FPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATG------------EVIGTLPSGPD--PELFALHPNGKILYIAN 91 (300)
T ss_pred EECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCC------------cEEEeccCCCC--ccEEEECCCCCEEEEEc
Confidence 33344578899999 5554 477788999999999876 33334444443 46789999998665 45
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.|+.|++||+.+.... ..+. +...+.+++|+|++ .++
T Consensus 92 ~~~~~l~~~d~~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~dg-~~l 129 (300)
T TIGR03866 92 EDDNLVTVIDIETRKVL----------------------------------------AEIP-VGVEPEGMAVSPDG-KIV 129 (300)
T ss_pred CCCCeEEEEECCCCeEE----------------------------------------eEee-CCCCcceEEECCCC-CEE
Confidence 66899999999753211 1222 12346789999999 677
Q ss_pred EEEcCCC-eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 295 CSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 295 ~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
++++.++ .+.+||.++.. ..... .....+.+++|+| ++.+|+ ++..++.|++||+++ ++.+..+..+.
T Consensus 130 ~~~~~~~~~~~~~d~~~~~--~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~~~~~ 199 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYE--IVDNV-LVDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVAT------RKVIKKITFEI 199 (300)
T ss_pred EEEecCCCeEEEEeCCCCe--EEEEE-EcCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCc------ceeeeeeeecc
Confidence 7777664 57788987765 22222 2334567899999 777775 555699999999998 55555443221
Q ss_pred -------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997 373 -------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 445 (496)
Q Consensus 373 -------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l 445 (496)
.....++|+|++++++++.+.++.|.+||+.+. +..... .+...+.+++|+|++.++
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---------------~~~~~~-~~~~~~~~~~~~~~g~~l 263 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---------------EVLDYL-LVGQRVWQLAFTPDEKYL 263 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---------------cEEEEE-EeCCCcceEEECCCCCEE
Confidence 123578999999977666666778999999763 122222 233468999999999887
Q ss_pred EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+++.+ .+|.|+|||+. +++++.+++.. ...+.++|+|
T Consensus 264 ~~~~~-------~~~~i~v~d~~------~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 264 LTTNG-------VSNDVSVIDVA------ALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEcC-------CCCeEEEEECC------CCcEEEEEEcc-cccceeEeCC
Confidence 75433 35999999999 67777777755 4459999987
No 131
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.9e-25 Score=221.50 Aligned_cols=278 Identities=20% Similarity=0.369 Sum_probs=210.2
Q ss_pred eEEEecCCCCcEEEEEeC----------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc---
Q 010997 144 NRIRELPQNTKIVATHTD----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY--- 210 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~--- 210 (496)
..++|+|....++|+|.. +.++-||.+...... ...++...+.... ..+.|+|.+.+..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~------~dlk~~~s~~s~~--rF~kL~W~~~g~~~~G 81 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES------SDLKPVGSLQSSN--RFNKLAWGSYGSHSHG 81 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc------ccccccccccccc--cceeeeecccCCCccc
Confidence 346788855557776644 335555554433111 0113333444333 3689999988765
Q ss_pred -eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 211 -VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 211 -l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
|+.|..||.|.+||...-.. ......+..+..|.+.|..+.|++.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~----------------------------------~~~~~~la~~~~h~G~V~gLDfN~~ 127 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIA----------------------------------NASEEVLATKSKHTGPVLGLDFNPF 127 (1049)
T ss_pred eeeccccCCceEEecchhhcc----------------------------------CcchHHHhhhcccCCceeeeecccc
Confidence 88899999999999864210 1222334667789999999999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
.++++++|+.||.|.|||+...+.+.........+.|.+++|+......||+++.+|.+.|||+|. .+++..+.
T Consensus 128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~------~~pii~ls 201 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK------KKPIIKLS 201 (1049)
T ss_pred CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC------CCcccccc
Confidence 988999999999999999998775544333346789999999987788999999999999999998 66777776
Q ss_pred cCCC--CEEEEEEcCCCCCEEEEEeCCC---cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc
Q 010997 370 GHSA--AVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 444 (496)
Q Consensus 370 ~h~~--~i~~l~~sp~~~~llas~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~ 444 (496)
.+.. .+..|+|+|+...-+++++.|. .|.+||++... ..+..+.+|...|.++.|++.+..
T Consensus 202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--------------sP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------------SPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--------------CchhhhcccccceeeeccCCCCch
Confidence 6554 4789999999877666777653 59999998742 234445899999999999999977
Q ss_pred EEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 445 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 445 l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+++| +|.|+.|.+|+.. +++.+.++....+.+..+.|.|
T Consensus 268 lllS-------sgkD~~ii~wN~~------tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 268 LLLS-------SGKDNRIICWNPN------TGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred hhhc-------ccCCCCeeEecCC------CceEeeecCCCCcceeeeeecC
Confidence 7774 5556999999999 8999999998888899999987
No 132
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=181.17 Aligned_cols=278 Identities=15% Similarity=0.355 Sum_probs=202.5
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec-------CCCCceEEecCC
Q 010997 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-------PTEPYVLSGGKD 217 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~-------p~~~~l~sg~~D 217 (496)
.+.|+| +|..|.+-+.|..+.+|++....-.....+.........++-..+..|+..+|- |+..++++.++|
T Consensus 54 gckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 54 GCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred cceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 568999 888888899999999999875422211111112233334444455568888886 566799999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC---ceeEEEEccCCCceE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED---TVEDVTFCPSSAQEF 294 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l 294 (496)
.-|++||.-++........ -.|.+ ..-+++|+|+|. .|
T Consensus 133 ~PIh~wdaftG~lraSy~~--------------------------------------ydh~de~taAhsL~Fs~DGe-ql 173 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRA--------------------------------------YDHQDEYTAAHSLQFSPDGE-QL 173 (406)
T ss_pred Cceeeeeccccccccchhh--------------------------------------hhhHHhhhhheeEEecCCCC-eE
Confidence 9999999987755322211 12333 345899999994 45
Q ss_pred EEEcCCCeEEEEEc-cCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 295 CSVGDDSCLILWDA-RVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 295 ~s~~~dg~i~iwd~-~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
++ +...+|+++|+ |.+........ .+..+-|.|++|+|.+...+|.|+....+-||.-.. ..++..+
T Consensus 174 fa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~------~~pl~ll 246 (406)
T KOG2919|consen 174 FA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------RRPLQLL 246 (406)
T ss_pred ee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC------CCceeee
Confidence 44 56789999999 55542222221 233678899999998788999999999999988777 6889999
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC---CcceEEecCCCCcE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDPWT 445 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~p~~~~l 445 (496)
.+|.+.|+.++|.++|..+|.-+-.|-.|..||++..+. ++..+..|.+ .-.-+...|.+.+|
T Consensus 247 ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--------------pv~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 247 GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--------------PVYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--------------hhhhhhhhccCccceEEEecCCCCcee
Confidence 999999999999999998874444488999999998532 3444555544 22345667878776
Q ss_pred EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+ +|+.||.|++||+.+ .+..+..+..|+..|+.|+++|
T Consensus 313 a--------sG~tdG~V~vwdlk~-----~gn~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 313 A--------SGDTDGSVRVWDLKD-----LGNEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred e--------ccCCCccEEEEecCC-----CCCcccccccccccccceecCc
Confidence 6 788889999999995 3667788888999999999988
No 133
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.3e-23 Score=195.58 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=220.8
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-c
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-Y 210 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~ 210 (496)
..+-..+|++.|.+|...| .+..||+|+.||+|+||.+.++ +++.++.--. .|.|++|+|.+. -
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~Tg------------Rcvr~~~~d~--~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATG------------RCVRTVQFDS--EIRSVAWNPLSDLC 456 (733)
T ss_pred eeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecc------------eEEEEEeecc--eeEEEEecCCCCce
Confidence 4456679999999999999 9999999999999999999999 6666655443 699999999876 3
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC----cCCeeeeecCCCceeEEEE
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS----VGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~~ 286 (496)
++.++....+.|-+..-+................ ........+..|.... ...+.....|...|..|.|
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~-------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAP-------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW 529 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCC-------CccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence 3344444556666654331111100000000000 0011112233333331 1123455678899999999
Q ss_pred ccCCCceEEEEcC---CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997 287 CPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 287 ~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 363 (496)
|..| .+|++..- ...|.|+++..... ...+....+.|.++.|+| ...+|++++. ..|+|||+.. ..
T Consensus 530 HrkG-DYlatV~~~~~~~~VliHQLSK~~s--Q~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~k------qe 598 (733)
T KOG0650|consen 530 HRKG-DYLATVMPDSGNKSVLIHQLSKRKS--QSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSK------QE 598 (733)
T ss_pred ecCC-ceEEEeccCCCcceEEEEecccccc--cCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhH------HH
Confidence 9999 67887654 35799999987662 344555678899999999 6777777754 5699999998 67
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~ 443 (496)
.+.++......|.+++.+|.|..|+ .|+.|+.++.||+.... .....+.-|...|++|+|++.-+
T Consensus 599 lvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlss--------------kPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 599 LVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSS--------------KPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred HHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCc--------------chhHHhhhhhhhhhhhhhccccc
Confidence 7777777788899999999999875 88899999999998742 23344677899999999999766
Q ss_pred cEEEEecCCCCCCCCCCeEEEeec---CCCCcCCchHHHHHHHhccce----EEEeccCC
Q 010997 444 WTVVSVSDDCDSTGGGGTLQIWRM---SDLIYRPQDEVLAELEKFKAH----VISCTSKP 496 (496)
Q Consensus 444 ~l~~s~s~d~~sgg~Dg~i~iw~~---~~~~~~~~~~~~~~l~~h~~~----v~~~~~sP 496 (496)
|++|+++| |++.||.- ++++.++.--++..|.+|... |.++.|||
T Consensus 664 -Lfas~sdD-------gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 664 -LFASGSDD-------GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred -eeeeecCC-------CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence 56666665 99999973 444555666788999999876 99999998
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=4e-23 Score=195.44 Aligned_cols=326 Identities=18% Similarity=0.295 Sum_probs=214.9
Q ss_pred cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceE----------E-EecCCCceeEEEecCCCCcEEEEEeC
Q 010997 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKH----------K-TIIHPGEVNRIRELPQNTKIVATHTD 161 (496)
Q Consensus 93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~h~~~V~~l~~~p~~~~~lat~~~ 161 (496)
++++.+.+|+||++.+-........... .......|.+.+. . ..||.+.|+++.|+| .+..|.+++.
T Consensus 210 aS~SQD~yIRiW~i~~~~~~~~~~~e~~-~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASa 287 (764)
T KOG1063|consen 210 ASSSQDRYIRIWRIVLGDDEDSNEREDS-LTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASA 287 (764)
T ss_pred EecCCceEEEEEEEEecCCccccccccc-cccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheeccc
Confidence 3567889999999876442111100000 0000111222111 1 249999999999999 7777889999
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEE--ecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCcccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA 239 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l--~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~ 239 (496)
|.++.||......... .....+ .++.....++.-|+|+++.+++-+.-|-.++|...+...
T Consensus 288 DksmiiW~pd~~tGiW--------v~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~--------- 350 (764)
T KOG1063|consen 288 DKSMIIWKPDENTGIW--------VDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF--------- 350 (764)
T ss_pred CcceEEEecCCccceE--------EEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc---------
Confidence 9999999876652111 111111 223333578999999999999999999999998332110
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC----------------------------
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA---------------------------- 291 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---------------------------- 291 (496)
..+...+.+|.+.|.++.|+|.|.
T Consensus 351 ----------------------------w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 351 ----------------------------WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred ----------------------------eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence 111122334555555555555541
Q ss_pred -----------------ceEEEEcCCCeEEEEEccCC---------------C----------------c----------
Q 010997 292 -----------------QEFCSVGDDSCLILWDARVG---------------T----------------S---------- 313 (496)
Q Consensus 292 -----------------~~l~s~~~dg~i~iwd~~~~---------------~----------------~---------- 313 (496)
..|++|.+...+|+|+.... . +
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 33444444444444433200 0 0
Q ss_pred ---------------------------------cceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCC
Q 010997 314 ---------------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRN 355 (496)
Q Consensus 314 ---------------------------------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~ 355 (496)
|....+.+|...|.+++.+| +++++|++... ..|+||+..+
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc
Confidence 01222357889999999999 99999998865 4699999998
Q ss_pred CCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 435 (496)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 435 (496)
...+..+.+|.-.|+.++|||++++| ++.+.|+++.+|........ ...+.....|+.-|.+
T Consensus 562 ------W~~~~~L~~HsLTVT~l~FSpdg~~L-LsvsRDRt~sl~~~~~~~~~-----------e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 562 ------WLQVQELEGHSLTVTRLAFSPDGRYL-LSVSRDRTVSLYEVQEDIKD-----------EFRFACLKAHTRIIWD 623 (764)
T ss_pred ------hhhhheecccceEEEEEEECCCCcEE-EEeecCceEEeeeeecccch-----------hhhhccccccceEEEE
Confidence 77888899999999999999999975 58999999999998553111 1112336789999999
Q ss_pred EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH--HHHhccceEEEeccCC
Q 010997 436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA--ELEKFKAHVISCTSKP 496 (496)
Q Consensus 436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~sP 496 (496)
+.|+|++.+ +| |++.|.+|+||...+. ..+.+. ....+..+|+++++.|
T Consensus 624 csW~pde~~-Fa-------TaSRDK~VkVW~~~~~----~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 624 CSWSPDEKY-FA-------TASRDKKVKVWEEPDL----RDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred cccCcccce-eE-------EecCCceEEEEeccCc----hhhhhhhhchhccCCceeeEEeec
Confidence 999999887 55 4555599999999854 123333 3456888999999876
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7.2e-23 Score=175.70 Aligned_cols=261 Identities=14% Similarity=0.183 Sum_probs=196.3
Q ss_pred CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~ 173 (496)
.++.++.+++|+++-... +. | .....|.++|.+++|+. ++..+++|+.|+.+++||+.++
T Consensus 45 A~SWD~tVR~wevq~~g~----------~~-----~----ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQ----------LV-----P----KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred ecccCCceEEEEEecCCc----------cc-----c----hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC
Confidence 457899999998764211 10 1 13357999999999999 8889999999999999999988
Q ss_pred CCccccCCCCCCCCceEEecCCCCcceeeeecCCCC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceecc
Q 010997 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (496)
. ...+..|.+ +|.++.|-+... .|+|||.|++|++||.+.....
T Consensus 105 Q-------------~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv-------------------- 150 (347)
T KOG0647|consen 105 Q-------------VSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV-------------------- 150 (347)
T ss_pred C-------------eeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCCCee--------------------
Confidence 2 345677877 799999987755 7999999999999999853221
Q ss_pred CCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997 252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331 (496)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 331 (496)
..+. -.+.|.++..- . .+++.+..+..|.+|+++.+............-.+.||+.
T Consensus 151 --------------------~t~~-LPeRvYa~Dv~--~-pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~ 206 (347)
T KOG0647|consen 151 --------------------ATLQ-LPERVYAADVL--Y-PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC 206 (347)
T ss_pred --------------------eeee-ccceeeehhcc--C-ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence 1111 23456665543 2 4688888899999999987763333333344556889998
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC---------CCEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---------~~i~~l~~sp~~~~llas~~~dg~i~iwd~ 402 (496)
.+ +....|.|+-+|.+.|..+.... ...-.+|+.|. .+|++|+|+|... .|+|++.||+..+||-
T Consensus 207 f~-d~~~~alGsiEGrv~iq~id~~~----~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 207 FQ-DKDGFALGSIEGRVAIQYIDDPN----PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDK 280 (347)
T ss_pred Ee-cCCceEeeeecceEEEEecCCCC----ccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecc
Confidence 88 77777999999999999888732 13334455554 2588999999877 4789999999999998
Q ss_pred CCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
... ..+.....|..+|++++|+.+|..++.+.+.|.
T Consensus 281 dar---------------~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDW 316 (347)
T KOG0647|consen 281 DAR---------------TKLKTSETHPQPITCCSFNRNGSIFAYALGYDW 316 (347)
T ss_pred hhh---------------hhhhccCcCCCccceeEecCCCCEEEEEeeccc
Confidence 764 344555678899999999999999888888885
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=5.4e-23 Score=194.98 Aligned_cols=296 Identities=15% Similarity=0.203 Sum_probs=215.8
Q ss_pred ccceEEEecCCCceeEEEecCC----------CCcEEEEEeCCCcEEEEeCCCCCCcccc----C-----------CCCC
Q 010997 130 FVKKHKTIIHPGEVNRIRELPQ----------NTKIVATHTDSPDVLIWDVEAQPNRHAV----L-----------GATN 184 (496)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~----------~~~~lat~~~dg~i~iwd~~~~~~~~~~----~-----------~~~~ 184 (496)
.-+....+.|...|+.+.-.|- -..-++|++.|++|++||+....+...+ . +..+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 4456777889998988876661 1225889999999999999874322210 0 0000
Q ss_pred C----------CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997 185 S----------RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK 254 (496)
Q Consensus 185 ~----------~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (496)
. +.....-+.. ..+.+++.+|+|++|++|..-|.++|+++.....
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r-~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~------------------------ 493 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSR-FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY------------------------ 493 (1080)
T ss_pred hhhhccCCcccccchhhcCcc-cceEEEEECCCcceecccCccCceEEEEehhhhh------------------------
Confidence 0 0011111111 2489999999999999999999999999975322
Q ss_pred CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec
Q 010997 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332 (496)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 332 (496)
...+..|...|.|+.|+.. +..+|++++.|..|++||+...-. +..++.+|...|++|.|.
T Consensus 494 ----------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 494 ----------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred ----------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-hhhhhcccccceeEEEEe
Confidence 2556789999999999853 236899999999999999976543 567788999999999998
Q ss_pred CCCC--cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997 333 PLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 410 (496)
Q Consensus 333 p~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~ 410 (496)
- ++ ..+++++.|..|.+--.+.... +..-+.++-......++.++..|...+ +++++.|+.|+|||+..++.
T Consensus 557 ~-~gln~~MiscGADksimFr~~qk~~~-g~~f~r~t~t~~ktTlYDm~Vdp~~k~-v~t~cQDrnirif~i~sgKq--- 630 (1080)
T KOG1408|consen 557 C-NGLNRKMISCGADKSIMFRVNQKASS-GRLFPRHTQTLSKTTLYDMAVDPTSKL-VVTVCQDRNIRIFDIESGKQ--- 630 (1080)
T ss_pred e-cCCceEEEeccCchhhheehhccccC-ceeccccccccccceEEEeeeCCCcce-EEEEecccceEEEeccccce---
Confidence 7 44 6788999998776543332111 000111111122457899999999985 57999999999999998522
Q ss_pred CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEE
Q 010997 411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI 490 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~ 490 (496)
...+..-.+|.+....+...|.|-|++.||+ |.++.++|+. ++++++.+.||...|+
T Consensus 631 ---------~k~FKgs~~~eG~lIKv~lDPSgiY~atScs--------dktl~~~Df~------sgEcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 631 ---------VKSFKGSRDHEGDLIKVILDPSGIYLATSCS--------DKTLCFVDFV------SGECVAQMTGHSEAVT 687 (1080)
T ss_pred ---------eeeecccccCCCceEEEEECCCccEEEEeec--------CCceEEEEec------cchhhhhhcCcchhee
Confidence 1334444567788889999999999886666 5899999999 8999999999999999
Q ss_pred EeccCC
Q 010997 491 SCTSKP 496 (496)
Q Consensus 491 ~~~~sP 496 (496)
.+.|.|
T Consensus 688 G~kF~n 693 (1080)
T KOG1408|consen 688 GVKFLN 693 (1080)
T ss_pred eeeecc
Confidence 999975
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=8.9e-24 Score=192.66 Aligned_cols=241 Identities=19% Similarity=0.357 Sum_probs=196.9
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
...-|.++..+| +++.|++|+.-.++.|||+..... +....+..-. ...++|+.+||.+..++|..||
T Consensus 464 rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTp----------rikaeltssa-paCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 464 RDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTP----------RIKAELTSSA-PACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred cccceeeeEecC-CCceEEeccccceeeeeeccCCCc----------chhhhcCCcc-hhhhhhhcCCccceeeeeccCC
Confidence 445688889999 889999999999999999987621 1112222222 2578999999999999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|.|||+.+.. .++.|.+|.+.+.||..+++| ..|-||+
T Consensus 532 nI~vwDLhnq~----------------------------------------~VrqfqGhtDGascIdis~dG-tklWTGG 570 (705)
T KOG0639|consen 532 NIAVWDLHNQT----------------------------------------LVRQFQGHTDGASCIDISKDG-TKLWTGG 570 (705)
T ss_pred cEEEEEcccce----------------------------------------eeecccCCCCCceeEEecCCC-ceeecCC
Confidence 99999998543 247789999999999999999 7899999
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l 378 (496)
-|.+|+.||+|.+...... ...+.|.++..+| ++.+||.|-.++.+.+..... ...+.+..|.+.|.++
T Consensus 571 lDntvRcWDlregrqlqqh---dF~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-------p~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQH---DFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-------PEKYQLHLHESCVLSL 639 (705)
T ss_pred Cccceeehhhhhhhhhhhh---hhhhhheecccCC-CccceeeecccCcEEEEecCC-------ccceeecccccEEEEE
Confidence 9999999999998843222 3467899999999 999999999999999998875 4566777899999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG 458 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~ 458 (496)
.|.+.|++ |++.+.|+.+..|.+..+ ..+|... ..+.|.++..+.++.+++ ||+.
T Consensus 640 KFa~cGkw-fvStGkDnlLnawrtPyG---------------asiFqsk-E~SsVlsCDIS~ddkyIV--------TGSG 694 (705)
T KOG0639|consen 640 KFAYCGKW-FVSTGKDNLLNAWRTPYG---------------ASIFQSK-ESSSVLSCDISFDDKYIV--------TGSG 694 (705)
T ss_pred EecccCce-eeecCchhhhhhccCccc---------------cceeecc-ccCcceeeeeccCceEEE--------ecCC
Confidence 99999996 679999999999998875 3344443 356799999999888766 7777
Q ss_pred CCeEEEeecC
Q 010997 459 GGTLQIWRMS 468 (496)
Q Consensus 459 Dg~i~iw~~~ 468 (496)
|....||.+.
T Consensus 695 dkkATVYeV~ 704 (705)
T KOG0639|consen 695 DKKATVYEVI 704 (705)
T ss_pred CcceEEEEEe
Confidence 8888888763
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-22 Score=175.72 Aligned_cols=224 Identities=17% Similarity=0.350 Sum_probs=174.2
Q ss_pred cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCC-CcEEEEEeCCCcEEEEeCC
Q 010997 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQN-TKIVATHTDSPDVLIWDVE 171 (496)
Q Consensus 93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~~lat~~~dg~i~iwd~~ 171 (496)
++|+.+.+|.|+++.- ..+.-.+..|.|.|+++.|.+.- ...|++|+.||.|.+|+..
T Consensus 57 aSGssDetI~IYDm~k---------------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 57 ASGSSDETIHIYDMRK---------------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred eccCCCCcEEEEeccc---------------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 4677888888876532 12344567899999999998832 2378899999999999998
Q ss_pred CCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceecc
Q 010997 172 AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251 (496)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (496)
.- ..+..+++|.+. |+.++.+|.+++-++.+.|+.+++||+-+++......
T Consensus 116 ~W------------~~~~slK~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~---------------- 166 (362)
T KOG0294|consen 116 SW------------ELLKSLKAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN---------------- 166 (362)
T ss_pred Ce------------EEeeeecccccc-cceeEecCCCceEEEEcCCceeeeehhhcCccceeec----------------
Confidence 77 677899999994 9999999999999999999999999997654321111
Q ss_pred CCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997 252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331 (496)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 331 (496)
+ ....+.+.|+|.| ..|+.++. ..|-+|.+.+.. +... ......+.|+.|
T Consensus 167 ----------------------L---~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~--v~~~-i~~~~r~l~~~~ 216 (362)
T KOG0294|consen 167 ----------------------L---KNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNAS--VFRE-IENPKRILCATF 216 (362)
T ss_pred ----------------------c---CCcceeeEEcCCC-CEEEEEec-cEEEEEecccHh--Hhhh-hhccccceeeee
Confidence 1 1122348999999 55666655 468899887765 2222 233456778888
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc--CCCCCEEEEEeCCCcEEEEECCCC
Q 010997 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s--p~~~~llas~~~dg~i~iwd~~~~ 405 (496)
. ++..|++|+.|+.|++||... ..++..+.+|...|.++.+- |++. +|+|++.||.|+|||++..
T Consensus 217 l--~~~~L~vG~d~~~i~~~D~ds------~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 217 L--DGSELLVGGDNEWISLKDTDS------DTPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred c--CCceEEEecCCceEEEeccCC------CccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEcccc
Confidence 7 588999999999999999998 78999999999999999843 4444 6789999999999999874
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=187.44 Aligned_cols=291 Identities=12% Similarity=0.202 Sum_probs=206.7
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK 218 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg 218 (496)
.+.|+++.|+| ...+|.+|+.||.++||.+....+. .+..+.-- ..+|.+.+|.|+|. .+++++.-.
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~----------~lqS~~l~-~fPi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNP----------KLQSIHLE-KFPIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccCh----------hheeeeec-cCccceeeecCCCceEEEecccce
Confidence 47899999999 8889999999999999999876322 22233222 33789999999998 899999999
Q ss_pred cEEEEecCCccccccCCccccc-----cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 219 SVVLWSIQDHITSSATDPATAK-----SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
.+..||+.+.+......+.... ....+..--........+.+.+....+.+.+..+. -.+.|.+++|+.++ ..
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSds-k~ 358 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDS-KE 358 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCC-cE
Confidence 9999999987654433332211 00000000011122334555555555655555554 35679999999988 77
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
|++++.+|.|.+||++... ++..+.. ..-.-++++.++ ++.+||+|+..|.|.|||..+.......+|+..+..-.
T Consensus 359 l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred EEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 8888888999999999986 4554422 122345777778 89999999999999999987755555578898888888
Q ss_pred CCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 373 AAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
..|++++|+|+.+ |||.+|. +..+++--+.+..--. ++|. ..+-.+.|++++|+|.+.+++
T Consensus 436 t~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFs-------NfP~-----~n~~vg~vtc~aFSP~sG~lA---- 498 (514)
T KOG2055|consen 436 TAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFS-------NFPT-----SNTKVGHVTCMAFSPNSGYLA---- 498 (514)
T ss_pred eeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeec-------cCCC-----CCCcccceEEEEecCCCceEE----
Confidence 9999999999998 6777765 6678887776521000 0111 122345799999999888766
Q ss_pred CCCCCCCCCCeEEEeecC
Q 010997 451 DDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~ 468 (496)
.|..+|.|.+|.+.
T Consensus 499 ----vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 499 ----VGNEAGRVHLFKLH 512 (514)
T ss_pred ----eecCCCceeeEeec
Confidence 56667999999986
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.5e-22 Score=174.47 Aligned_cols=237 Identities=16% Similarity=0.231 Sum_probs=181.2
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
..+.|.+++.+++|.+ ...+++|+.||.|+.+|+.++. ...+..|.. +|.|+.+++....+++|
T Consensus 49 ~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~-------------~~~igth~~-~i~ci~~~~~~~~vIsg 112 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGN-------------EDQIGTHDE-GIRCIEYSYEVGCVISG 112 (323)
T ss_pred hheecCCceeeeeccC--CceEEEeccCceEEEEEecCCc-------------ceeeccCCC-ceEEEEeeccCCeEEEc
Confidence 4567999999999987 3468899999999999999872 234566766 79999999988899999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
|.|++|++||.+...... .+. ....|.++... + +.|
T Consensus 113 sWD~~ik~wD~R~~~~~~----------------------------------------~~d-~~kkVy~~~v~--g-~~L 148 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVG----------------------------------------TFD-QGKKVYCMDVS--G-NRL 148 (323)
T ss_pred ccCccEEEEecccccccc----------------------------------------ccc-cCceEEEEecc--C-CEE
Confidence 999999999998532211 111 12378888775 3 679
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC--
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-- 372 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-- 372 (496)
+.|+.|..|.+||+|+...+.......-.-.+.||++.| ++.-+++++-||.|.+=.+..... ....-..|+.|.
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~--~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEE--AQSKKYAFKCHRLS 225 (323)
T ss_pred EEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchH--HhhhceeEEeeecc
Confidence 999999999999999987555333445567889999999 888899999999988766554210 013344556564
Q ss_pred -------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997 373 -------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 445 (496)
Q Consensus 373 -------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l 445 (496)
.+|++|+|+|-.. .||||+.||.|.+||+... ..+..+......|..++|+.+|..|
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~r---------------Krl~q~~~~~~SI~slsfs~dG~~L 289 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNR---------------KRLKQLAKYETSISSLSFSMDGSLL 289 (323)
T ss_pred cCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcch---------------hhhhhccCCCCceEEEEeccCCCeE
Confidence 3799999999876 4789999999999999874 3344455666789999999999877
Q ss_pred EEEec
Q 010997 446 VVSVS 450 (496)
Q Consensus 446 ~~s~s 450 (496)
+++.|
T Consensus 290 Aia~s 294 (323)
T KOG1036|consen 290 AIASS 294 (323)
T ss_pred EEEec
Confidence 76554
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-23 Score=191.19 Aligned_cols=266 Identities=18% Similarity=0.271 Sum_probs=203.3
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i 222 (496)
|+.+.|...+.-.+|+.+.|..|++|.-.... . ....+..+.|.. -+|++......|+++|+..+.|+|
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~------~Vp~~~k~~gd~---~~Cv~~~s~S~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--P------EVPRVRKLTGDN---AFCVACASQSLYEISGGQSGCVKI 105 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCC--C------ccceeeccccch---HHHHhhhhcceeeeccCcCceeee
Confidence 89999988443344555667789999765441 0 011122333332 356666666689999999999999
Q ss_pred EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe
Q 010997 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 302 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (496)
||++...+ .+.+.+|++.|+++.++..+ .+|++++..|-
T Consensus 106 wdl~~kl~----------------------------------------hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGd 144 (673)
T KOG4378|consen 106 WDLRAKLI----------------------------------------HRFLKDHQSTVTYVDYNNTD-EYIASVSDGGD 144 (673)
T ss_pred hhhHHHHH----------------------------------------hhhccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence 99984322 25678899999999999887 68999999999
Q ss_pred EEEEEccCCCccceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc
Q 010997 303 LILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381 (496)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 381 (496)
|.|..+.++.. ...+.. ....|.-+.|+|....+|.+++.+|.|.+||...+. ...+-...|..+...|+|+
T Consensus 145 iiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-----p~~~~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 145 IIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-----PIFHASEAHSAPCRGICFS 217 (673)
T ss_pred EEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-----cccchhhhccCCcCcceec
Confidence 99999988773 333322 345567899999777889999999999999999842 2334456899999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT 461 (496)
Q Consensus 382 p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~ 461 (496)
|..+.||++.+.|..|.+||++.... ...+. ...+...++|.++|.+|+ .|...|.
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s-----------~~~l~-----y~~Plstvaf~~~G~~L~--------aG~s~G~ 273 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQAS-----------TDRLT-----YSHPLSTVAFSECGTYLC--------AGNSKGE 273 (673)
T ss_pred CCccceEEEecccceEEEeecccccc-----------cceee-----ecCCcceeeecCCceEEE--------eecCCce
Confidence 99999999999999999999986311 11122 245789999999888776 4555699
Q ss_pred EEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 462 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 462 i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|..||++. ...+++++..|...|++++|.|
T Consensus 274 ~i~YD~R~-----~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 274 LIAYDMRS-----TKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EEEEeccc-----CCCCceEeeecccceeEEEeee
Confidence 99999995 5788999999999999999976
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=192.10 Aligned_cols=267 Identities=16% Similarity=0.247 Sum_probs=208.0
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
-+.+|.++||+. ..+.||.+-.+|.|.||++.... -....+.|+.+..|.+|+|+ ++..|+|.+.+|
T Consensus 24 ~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w-----------~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg 90 (691)
T KOG2048|consen 24 KPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNW-----------FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG 90 (691)
T ss_pred eccceEEEEEec-cCCceeeeccCCcEEEEccCCCc-----------eeeEEEecCCCCceeeEEEc-cCCeEEeecCCc
Confidence 357899999999 66679999999999999998863 45567889999899999999 455788999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
+|.-||+.+.. ++..+....+.|++++.+|.+ ..++.|+
T Consensus 91 ~i~EwDl~~lk----------------------------------------~~~~~d~~gg~IWsiai~p~~-~~l~Igc 129 (691)
T KOG2048|consen 91 SITEWDLHTLK----------------------------------------QKYNIDSNGGAIWSIAINPEN-TILAIGC 129 (691)
T ss_pred eEEEEecccCc----------------------------------------eeEEecCCCcceeEEEeCCcc-ceEEeec
Confidence 99999997543 335556677899999999998 7899999
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-------ecc-
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-------FEG- 370 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-------~~~- 370 (496)
+||.+..++...+.-.....+....+.|.+++|+| ++..+++|+.||.|++||... +..++. +..
T Consensus 130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~------~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKS------GQTLHIITMQLDRLSKR 202 (691)
T ss_pred CCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCC------CceEEEeeecccccccC
Confidence 99987777777665333344445678999999999 899999999999999999998 444441 111
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
...-|++|.|-.++. +|+|..-|.|.+||...+ .++..+..|...|.+++-.+++.+++
T Consensus 203 ~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~g---------------TLiqS~~~h~adVl~Lav~~~~d~vf---- 261 (691)
T KOG2048|consen 203 EPTIVWSVLFLRDST--IASGDSAGTVTFWDSIFG---------------TLIQSHSCHDADVLALAVADNEDRVF---- 261 (691)
T ss_pred CceEEEEEEEeecCc--EEEecCCceEEEEcccCc---------------chhhhhhhhhcceeEEEEcCCCCeEE----
Confidence 234588888887764 679999999999999875 56677889999999999999988888
Q ss_pred CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEec
Q 010997 451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCT 493 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~ 493 (496)
++|.|+.|.-+......-. -........|..-|.++|
T Consensus 262 ----saGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~a 298 (691)
T KOG2048|consen 262 ----SAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMA 298 (691)
T ss_pred ----EccCCCceEEEEecCCccc--eeeeccccCCcccceeee
Confidence 7788899998888743110 111222345555555554
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=7e-23 Score=197.63 Aligned_cols=310 Identities=14% Similarity=0.253 Sum_probs=219.1
Q ss_pred ceEEEecCC-CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ecCCCCcceeeeecCCCC
Q 010997 132 KKHKTIIHP-GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPTEP 209 (496)
Q Consensus 132 ~~~~~~~h~-~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~h~~~~v~~l~~~p~~~ 209 (496)
+++..+.|. |.|+.++|..++..++|+|+..|.+.+||++.. +....+ ..|.+ .|..+.|.|...
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k------------kl~~v~~nah~~-sv~~~~fl~~ep 301 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK------------KLINVTRNAHYG-SVTGATFLPGEP 301 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC------------eeeeeeeccccC-CcccceecCCCc
Confidence 567778886 999999999867778999999999999999987 333333 35655 578888888888
Q ss_pred ceEEecCCCcEEEEecCCcccc--------ccCCcccc-ccCCCCCceecc-----------------------------
Q 010997 210 YVLSGGKDKSVVLWSIQDHITS--------SATDPATA-KSAGSSGSIIKQ----------------------------- 251 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~----------------------------- 251 (496)
.|++++.|+++++|=.+++... ....|... ...+.....+..
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 8888888888888865532110 00000000 000000000000
Q ss_pred --------------------CC--------------CCCCCCCCCCCCCCcCC-eeeee-----cCCCceeEEEEccCCC
Q 010997 252 --------------------SP--------------KPGDGNDKAADGPSVGP-RGIYN-----GHEDTVEDVTFCPSSA 291 (496)
Q Consensus 252 --------------------~~--------------~~~~~~~~~~~~~~~~~-~~~~~-----~h~~~v~~l~~~~~~~ 291 (496)
.. ..+......|+...... ...+. .-...+++++.++.|
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG- 460 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG- 460 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-
Confidence 00 00111112222222111 11111 123578899999998
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
++.+.|...|.|-+|++.++- ....+ ..|..+|+.++.+. .++.+++++.+|.+++||+.. ..++..+
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~------k~l~~~l 531 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK------KVLKKSL 531 (910)
T ss_pred ceEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC------cceeeee
Confidence 899999999999999999886 33333 58999999999988 788999999999999999998 5666666
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
+ -...+.++..+.... ++|.+..|-.|+++|+.+. ..+..+.||.+.|++++|||+|+|++
T Consensus 532 ~-l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~---------------kvvR~f~gh~nritd~~FS~DgrWli-- 592 (910)
T KOG1539|consen 532 R-LGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR---------------KVVREFWGHGNRITDMTFSPDGRWLI-- 592 (910)
T ss_pred c-cCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh---------------hhhHHhhccccceeeeEeCCCCcEEE--
Confidence 5 356677888887766 6789999999999999874 56677899999999999999999988
Q ss_pred ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+++.|++|++||+. ++.++..+- -..+..++.|||
T Consensus 593 ------sasmD~tIr~wDlp------t~~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 593 ------SASMDSTIRTWDLP------TGTLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred ------EeecCCcEEEEecc------CcceeeeEe-cCCcceeeEECC
Confidence 66677999999998 666655554 456778888887
No 144
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=7.8e-24 Score=185.75 Aligned_cols=224 Identities=20% Similarity=0.361 Sum_probs=182.2
Q ss_pred CceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997 187 PDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (496)
Q Consensus 187 ~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (496)
.+..|.||.+ .|.|++=+|.. ..++||+.||.|+|||+.+..+
T Consensus 58 Fv~~L~gHrd-GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----------------------------------- 101 (433)
T KOG0268|consen 58 FVGSLDGHRD-GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----------------------------------- 101 (433)
T ss_pred chhhcccccc-ccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------------------
Confidence 3456789998 59999999986 6899999999999999975433
Q ss_pred CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
+..+..|.+.|.+|++.. ..++++++|.+|+.|-+... ...++ ...+.+..|.-+. .++.+||++.+
T Consensus 102 -----~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~---p~~ti-lg~s~~~gIdh~~-~~~~FaTcGe~ 168 (433)
T KOG0268|consen 102 -----IRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP---PLHTI-LGKSVYLGIDHHR-KNSVFATCGEQ 168 (433)
T ss_pred -----hheeecccCceeeEEecc---cceEEecCCcceeeeeccCC---cceee-ecccccccccccc-ccccccccCce
Confidence 367889999999999987 35899999999999998763 34444 3456677777776 67889988764
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
|.|||.+. ..|+.++..-...|.++.|+|....||++|+.|+.|.+||++.. .|...+..
T Consensus 169 --i~IWD~~R------~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~------------~Pl~KVi~ 228 (433)
T KOG0268|consen 169 --IDIWDEQR------DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA------------SPLKKVIL 228 (433)
T ss_pred --eeeccccc------CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC------------Cccceeee
Confidence 99999987 68899999888999999999999999999999999999999985 22222211
Q ss_pred ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
...-+.++|+| ..+.++++++| ..++.||++.+ ..++....+|.+.|++|+|||
T Consensus 229 ----~mRTN~IswnP-eafnF~~a~ED-------~nlY~~DmR~l-----~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 229 ----TMRTNTICWNP-EAFNFVAANED-------HNLYTYDMRNL-----SRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred ----eccccceecCc-cccceeecccc-------ccceehhhhhh-----cccchhhcccceeEEEeccCC
Confidence 23467899999 55666655554 89999999964 678899999999999999998
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.7e-22 Score=173.90 Aligned_cols=249 Identities=14% Similarity=0.273 Sum_probs=184.3
Q ss_pred EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 191 l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
-.+|.+ .|.++.|.+.|+++|+|+.|++|+|||.+... .+...
T Consensus 9 ~s~h~D-lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s------------------------------------~~W~~ 51 (361)
T KOG2445|consen 9 DSGHKD-LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS------------------------------------GTWSC 51 (361)
T ss_pred ccCCcc-eeeeeeecccCceeeeccCCCcEEEEeccCCC------------------------------------CceEE
Confidence 346776 79999999999999999999999999976432 23344
Q ss_pred eeeeecCCCceeEEEE-ccCCCceEEEEcCCCeEEEEEccCC-------CccceeeeccCCCCeEEEEecCC-CCcEEEE
Q 010997 271 RGIYNGHEDTVEDVTF-CPSSAQEFCSVGDDSCLILWDARVG-------TSPVIKVEKAHDADLHCVDWNPL-DDNLILT 341 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~s 341 (496)
......|.+.|..|.| +|.-++.+++++.|+++.||.-... +.....++....+.|+.|.|.|. -|-.||+
T Consensus 52 Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 52 TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred eeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE
Confidence 4677889999999999 4555589999999999999976321 11234455667889999999994 3678999
Q ss_pred EcCCCcEEEEeCCCCCCCCCCCCceEec-------cCCCCEEEEEEcCCC--CCEEEEEeCC-----CcEEEEECCCCCc
Q 010997 342 GSADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDK--SSVFGSSAED-----GLLNIWDYEKVGK 407 (496)
Q Consensus 342 gs~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~i~~l~~sp~~--~~llas~~~d-----g~i~iwd~~~~~~ 407 (496)
++.||++|||+.-.+-.-......+++. .+..+-.||.|+|.. +.+||.|+.+ +.+.||.....++
T Consensus 132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 132 ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR 211 (361)
T ss_pred eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence 9999999999877643322244455554 467778999999853 2367788755 4899999877542
Q ss_pred ccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC---cEEEEecCCCCCCCCCCeEEEeecCCCC--------c----
Q 010997 408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLI--------Y---- 472 (496)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~---~l~~s~s~d~~sgg~Dg~i~iw~~~~~~--------~---- 472 (496)
. ...+..+.+|..+|++++|.|+-. .++|.++ .|| |+||++.... .
T Consensus 212 K-----------w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~-------kDg-v~I~~v~~~~s~i~~ee~~~~~~ 272 (361)
T KOG2445|consen 212 K-----------WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT-------KDG-VRIFKVKVARSAIEEEEVLAPDL 272 (361)
T ss_pred e-----------eeeehhcCCCCCcceeeeeccccCCceeeEEEee-------cCc-EEEEEEeeccchhhhhcccCCCC
Confidence 2 234556779999999999999743 3666544 458 9999997321 1
Q ss_pred --CCchHHHHHHHhccceEEEeccC
Q 010997 473 --RPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 473 --~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
.-.-+.+.++.+|++.|+.+.|.
T Consensus 273 ~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 273 MTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred ccccceEEeeeccCCCCceEEEEEe
Confidence 11123567789999999999884
No 146
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.6e-22 Score=163.35 Aligned_cols=227 Identities=23% Similarity=0.367 Sum_probs=173.2
Q ss_pred ccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccc------------------c------------
Q 010997 130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA------------------V------------ 179 (496)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~------------------~------------ 179 (496)
.+...+...|.|.|.|.+|+| .+.+||+|++|.+|++-.+....+... .
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eEEeeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 344445567999999999999 999999999999999987654432211 0
Q ss_pred ----------CCCCCCCCceEEecCCCCcceee-eecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCce
Q 010997 180 ----------LGATNSRPDLILTGHQDNAEFAL-AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 248 (496)
Q Consensus 180 ----------~~~~~~~~~~~l~~h~~~~v~~l-~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 248 (496)
..-...++...+.||++. |.++ .| ++-.+++|+.|.+|++||++-..+......
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtgh-ilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~------------ 222 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGH-ILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDN------------ 222 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCccc-EEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccC------------
Confidence 000123556677888874 4444 34 577899999999999999985433221111
Q ss_pred eccCCCCCCCCCCCCCCCCcCCeeeeec---CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCC
Q 010997 249 IKQSPKPGDGNDKAADGPSVGPRGIYNG---HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 325 (496)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 325 (496)
.+.+ ....|.+++..|.| .+|++|-.|....+||+|.++ .+..+..|...
T Consensus 223 ------------------------~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r--~iq~f~phsad 275 (350)
T KOG0641|consen 223 ------------------------DFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR--MIQRFHPHSAD 275 (350)
T ss_pred ------------------------cccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc--eeeeeCCCccc
Confidence 0111 23679999999999 899999999999999999988 78888899999
Q ss_pred eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997 326 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (496)
Q Consensus 326 v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~ 403 (496)
|.|+.|+| ...|+++++.|..|++-|+.-.-. ..-++.....|+..+..+.|+|..-. |++.+.|.++.+|-+.
T Consensus 276 ir~vrfsp-~a~yllt~syd~~ikltdlqgdla--~el~~~vv~ehkdk~i~~rwh~~d~s-fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 276 IRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLA--HELPIMVVAEHKDKAIQCRWHPQDFS-FISSSADKTATLWALN 349 (350)
T ss_pred eeEEEeCC-CceEEEEecccceEEEeecccchh--hcCceEEEEeccCceEEEEecCccce-eeeccCcceEEEeccC
Confidence 99999999 899999999999999999874110 02344555679999999999998865 5589999999999764
No 147
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1e-21 Score=179.53 Aligned_cols=296 Identities=19% Similarity=0.347 Sum_probs=206.1
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccc----------------------------cCCCCCCCCc
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----------------------------VLGATNSRPD 188 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~~~~ 188 (496)
..|.+.|.++.... ++.+| +|+.|..|..||-.-...... +.+..+....
T Consensus 284 ~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 39999999999988 88666 599999999999321111111 1112223444
Q ss_pred eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccccc---CCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997 189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA---TDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (496)
....+|.+ ..+.++.+|+.+.|+|++.|+.+++|+ ..+.... .++........+. ....+...+...+.+.
T Consensus 362 ~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 362 LTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLDT 435 (626)
T ss_pred EEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc---eEEEeeccceEEEEec
Confidence 56678888 679999999999999999999999999 2222111 1121111111221 1122233344445555
Q ss_pred CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
.+...+..-.. ..++++++|+|+| .+||.|+.|+.|.||-+..........-+.+..+|+.+.|++ ++++|.+-+.|
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d 512 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGD 512 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCc
Confidence 55444444444 8899999999999 899999999999999998766433444445669999999999 99999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCceEe---------------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKF---------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 410 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~---------------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~ 410 (496)
-.|..|........ ..++.+ ..+...|..++-+.+.. ++|+|.+.|.|++|...-.
T Consensus 513 ~eiLyW~~~~~~~~---ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~----- 583 (626)
T KOG2106|consen 513 YEILYWKPSECKQI---TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCS----- 583 (626)
T ss_pred eEEEEEccccCccc---ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccC-----
Confidence 99999954432111 111111 12444566666676666 7899999999999998763
Q ss_pred CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
.+........+|.+.|.+++|...+..++ +.|.|.+|..|++
T Consensus 584 -------s~rA~~he~~ghs~~vt~V~Fl~~d~~li--------~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 584 -------SPRAPSHEYGGHSSHVTNVAFLCKDSHLI--------STGKDTSIMQWRL 625 (626)
T ss_pred -------CCcccceeeccccceeEEEEEeeCCceEE--------ecCCCceEEEEEe
Confidence 44456667889999999999998777666 4447899999986
No 148
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.7e-22 Score=175.73 Aligned_cols=284 Identities=16% Similarity=0.255 Sum_probs=202.9
Q ss_pred cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
+......+|.|.|++|.|+. ++++||+|+.|..++||++...-.. ...+|+.....|+...|+||+|...+++
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~------k~~KPI~~~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVR------KTPKPIGVMEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhh------cCCCCceeccCccccceEEEEEccCCee
Confidence 33445679999999999999 7999999999999999998754211 1226666666665457999999999999
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|++|+.+++|.+.|+++.+..... .-....+.|+.+..+|..
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~--------------------------------------~~~~~~~~VY~m~~~P~D 161 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVA--------------------------------------NENNNRGDVYHMDQHPTD 161 (609)
T ss_pred EecCCCcceeEeeecccceeeeee--------------------------------------cccCcccceeecccCCCC
Confidence 999999999999999875432111 112234589999999997
Q ss_pred CceEEEEcCCCeEEEEEccCCCcccee-eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC---------
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--------- 360 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~--------- 360 (496)
+.|++.+.++.|.+||.|....+... ...........+-|+|....+|++.+..+-+.+||++......
T Consensus 162 -N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L 240 (609)
T KOG4227|consen 162 -NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL 240 (609)
T ss_pred -ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC
Confidence 89999999999999999987643322 2334556788999999888999999999999999998743210
Q ss_pred --------------CCC---------CceEecc-----------CC-------CCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 010997 361 --------------VGS---------PINKFEG-----------HS-------AAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (496)
Q Consensus 361 --------------~~~---------~~~~~~~-----------h~-------~~i~~l~~sp~~~~llas~~~dg~i~i 399 (496)
.+. +..-+.- |. ..+.+++|..+.. +++|+.+-.|++
T Consensus 241 ~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 241 PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHI 318 (609)
T ss_pred cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEE
Confidence 011 1001111 11 2355677765544 579999999999
Q ss_pred EECCCCCcccCCC--CC-CCC-----CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 400 WDYEKVGKKVEQG--PR-TTN-----YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 400 wd~~~~~~~~~~~--~~-~~~-----~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
|.+.......... .. +.. .....+..+.||...++.+.|+|.. ++++ +.|-.+.++||..-.+
T Consensus 319 WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~-~~l~-------SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 319 WKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN-NLLV-------SSGVENSFKLWSDHRL 389 (609)
T ss_pred EecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc-ceEe-------ccchhhheeccccccC
Confidence 9997643332211 11 111 1223456789999999999999954 5665 5556699999986543
No 149
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=1.3e-21 Score=190.42 Aligned_cols=281 Identities=18% Similarity=0.262 Sum_probs=202.2
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC--ceE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVL 212 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--~l~ 212 (496)
..+.-..+|.|+.|+|.+++++|.|+.+|.|.+||+..+.... ..........|.. +|+.+.|..+.. -|+
T Consensus 237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~------~s~ls~~~~sh~~-~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP------PSGLSALEVSHSE-PVTAVVWLQNEHNTEFF 309 (555)
T ss_pred EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC------CcccccccccCCc-CeEEEEEeccCCCCceE
Confidence 3455678899999999999999999999999999999874321 0111223345666 789999987643 499
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+++.||.|+.|+++.-........... ......-......+++++|.+..++
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~----------------------------~~~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLES----------------------------KKHKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred EEecCCcEeeeeccccccchhhccccc----------------------------ccccccccccccceeeEeeccCCCc
Confidence 999999999998764322111100000 0000000122346899999999999
Q ss_pred eEEEEcCCCeEEEEEccCCCccc------eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 293 EFCSVGDDSCLILWDARVGTSPV------IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
.|+.|+++|.|.--+-...+... ......|.++|+++.++|+....|++++ |.+|+||..... ..++.
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-----~~Pl~ 435 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-----ASPLL 435 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-----CCcch
Confidence 99999999999884433322111 2344578899999999998778888877 999999998721 57888
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
.+..+...|++++|||....+||++..||.|.|||+..... ..+....-+....+.+.|++.+..++
T Consensus 436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSPALTRVRWSPNGKLLA 502 (555)
T ss_pred hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-------------CCcccccccccccceeecCCCCcEEE
Confidence 88888889999999999999999999999999999987421 22222223355667888888776544
Q ss_pred EEecCCCCCCCCCCeEEEeecCCCCcCCchH
Q 010997 447 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE 477 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~ 477 (496)
.|...|++++|++.+.+..+.++
T Consensus 503 --------vGd~~G~~~~~~l~~~l~~~~~~ 525 (555)
T KOG1587|consen 503 --------VGDANGTTHILKLSESLAVPSPN 525 (555)
T ss_pred --------EecCCCcEEEEEcCchhhccCcc
Confidence 55567999999998776665553
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=7.3e-22 Score=168.45 Aligned_cols=217 Identities=21% Similarity=0.396 Sum_probs=170.0
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEec
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG 215 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~ 215 (496)
.|-|.|+|+.|.| ++.-+|+-. |..|.+|+++.......... ...-.+|.. ..++-+|+| +++.+++.+
T Consensus 121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~------ss~s~e~~~-~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVL------SSESAEMRH-SFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeec------ccccccccc-eecccccCCCCccceEEEeC
Confidence 4567999999999 777787766 77999999998754211110 001112333 357788998 577777766
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
|+++..||+++..... .+-..|...|.++.|+|+...+|+
T Consensus 192 -d~tl~~~D~RT~~~~~---------------------------------------sI~dAHgq~vrdlDfNpnkq~~lv 231 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKKNN---------------------------------------SIEDAHGQRVRDLDFNPNKQHILV 231 (370)
T ss_pred -CCcEEEEEccchhhhc---------------------------------------chhhhhcceeeeccCCCCceEEEE
Confidence 8999999998654322 223468889999999999988999
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC---------------
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--------------- 360 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~--------------- 360 (496)
+|++||.|+|||.|..+.| +..+.+|...|.++.|+|...+++++|+.|..|.+|...+..+..
T Consensus 232 t~gDdgyvriWD~R~tk~p-v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d 310 (370)
T KOG1007|consen 232 TCGDDGYVRIWDTRKTKFP-VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED 310 (370)
T ss_pred EcCCCccEEEEeccCCCcc-ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchh
Confidence 9999999999999998865 566789999999999999889999999999999999876533110
Q ss_pred --------CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 361 --------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 361 --------~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
....+.++..|...|++++||.-.+++||+-+.||++.|=.+..
T Consensus 311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 12345578889999999999999999999999999999877654
No 151
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=3.5e-21 Score=164.49 Aligned_cols=295 Identities=16% Similarity=0.187 Sum_probs=204.9
Q ss_pred EEEecCCCceeEEEecC--CCCcEEEEEeC----CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997 134 HKTIIHPGEVNRIRELP--QNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p--~~~~~lat~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~ 207 (496)
+-...-+-.+.++.|+. ..+..||.|+. ...|.|-.+....... ..... -.|.- +++.+.|.|+
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~--------~~~a~-fd~~Y-P~tK~~wiPd 107 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL--------VEDAN-FDHPY-PVTKLMWIPD 107 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce--------eccCC-CCCCC-CccceEecCC
Confidence 33444455678888873 45567888875 3456666555321110 11111 23444 6889999998
Q ss_pred CC-----ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCcee
Q 010997 208 EP-----YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 282 (496)
Q Consensus 208 ~~-----~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 282 (496)
.. +|||++ -.+|+|.+............ +. ...-..+..+++
T Consensus 108 ~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~---------------------------L~----~~kns~~~aPlT 154 (364)
T KOG0290|consen 108 SKGVYPDLLATSS--DFLRLWRIGDEESRVELQSV---------------------------LN----NNKNSEFCAPLT 154 (364)
T ss_pred ccccCcchhhccc--CeEEEEeccCcCCceehhhh---------------------------hc----cCcccccCCccc
Confidence 53 566654 48999998742111100000 00 011224567999
Q ss_pred EEEEccCCCceEEEEcCCCeEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 283 DVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 283 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
+..|+.-.++++.+++-|.+..|||+.++. ..+...+.+|...|..|+|....-++||+.+.||.||+||+|.+..
T Consensus 155 SFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--- 231 (364)
T KOG0290|consen 155 SFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--- 231 (364)
T ss_pred ccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---
Confidence 999999888999999999999999999873 2245566799999999999985678999999999999999998653
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
...+.+-.....+...++|++...+++|+-..| ..|.|-|++.. ...+..+.+|.+.|+.++|.|
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P--------------~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP--------------CTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC--------------CcceehhhcCcccccceEecC
Confidence 122332223356789999999988888877665 47999999874 356777899999999999999
Q ss_pred CCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 441 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.....++||++| ..+.|||+..........++-... -.+.|..+.|+|
T Consensus 298 hS~~hictaGDD-------~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 298 HSSSHICTAGDD-------CQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS 345 (364)
T ss_pred CCCceeeecCCc-------ceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence 998888866665 899999998543322333444444 456788888875
No 152
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=5.7e-21 Score=179.94 Aligned_cols=252 Identities=12% Similarity=0.137 Sum_probs=172.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecCCccccc
Q 010997 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSS 232 (496)
Q Consensus 154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~~ 232 (496)
+++++++.|+.|++||+.++ +....+.++.. +.+++|+|+++.+ ++++.++.|++||..++...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~------------~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL------------EVTRTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCC------------ceEEEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-
Confidence 57899999999999999877 45566666654 5789999999876 57788999999998754321
Q ss_pred cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (496)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (496)
..+..+. .+..++|+|++..++++++.++.|++||+++..
T Consensus 67 ---------------------------------------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 67 ---------------------------------------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred ---------------------------------------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 1222222 245788999985455666778999999998765
Q ss_pred ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC-cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEE
Q 010997 313 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 391 (496)
Q Consensus 313 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~ 391 (496)
.+..+ .+...+.+++|+| ++.++++++.++ .+.+||.++ +..+..+. ....+..++|+|++..+++++
T Consensus 107 --~~~~~-~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 107 --VLAEI-PVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT------YEIVDNVL-VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred --EEeEe-eCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC------CeEEEEEE-cCCCccEEEECCCCCEEEEEc
Confidence 33333 2334578899999 899999888775 567789876 44444433 233457899999999776676
Q ss_pred eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-cCCC--CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 392 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHR--DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 392 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~--~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
..++.|.+||+.+..... .+.+.. ..+. .....++|+|++..++++.+. ++.|.+||+.
T Consensus 176 ~~~~~v~i~d~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-------~~~i~v~d~~ 237 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIK-----------KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-------ANRVAVVDAK 237 (300)
T ss_pred CCCCEEEEEEcCcceeee-----------eeeecccccccccCCccceEECCCCCEEEEEcCC-------CCeEEEEECC
Confidence 679999999998742110 000000 0011 123568899999887665433 3789999997
Q ss_pred CCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 469 DLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 469 ~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+++.+..+ .+...+.+++|+|
T Consensus 238 ------~~~~~~~~-~~~~~~~~~~~~~ 258 (300)
T TIGR03866 238 ------TYEVLDYL-LVGQRVWQLAFTP 258 (300)
T ss_pred ------CCcEEEEE-EeCCCcceEEECC
Confidence 33333222 2344678888887
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=8.2e-22 Score=179.73 Aligned_cols=222 Identities=17% Similarity=0.274 Sum_probs=180.6
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i 222 (496)
-.|++... -..++++|+..+.|+|||+... .....+.+|+. .|+++.++....|||+++..|.|.|
T Consensus 82 ~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~k------------l~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 82 AFCVACAS-QSLYEISGGQSGCVKIWDLRAK------------LIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDIII 147 (673)
T ss_pred HHHHhhhh-cceeeeccCcCceeeehhhHHH------------HHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEEE
Confidence 34444444 3369999999999999999865 45567899997 7999999999999999999999999
Q ss_pred EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEEcCCC
Q 010997 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
..+.++... ..|.. ....|.-+.|+|....+|.+++++|
T Consensus 148 h~~~t~~~t----------------------------------------t~f~~~sgqsvRll~ys~skr~lL~~asd~G 187 (673)
T KOG4378|consen 148 HGTKTKQKT----------------------------------------TTFTIDSGQSVRLLRYSPSKRFLLSIASDKG 187 (673)
T ss_pred EecccCccc----------------------------------------cceecCCCCeEEEeecccccceeeEeeccCC
Confidence 998865432 12222 2345678999999878899999999
Q ss_pred eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc
Q 010997 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381 (496)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 381 (496)
.|.+||+.... |.......|..+...|+|+|.+..+|++.+.|..|.+||++. ......+. ...+...|+|+
T Consensus 188 ~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Plstvaf~ 259 (673)
T KOG4378|consen 188 AVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPLSTVAFS 259 (673)
T ss_pred eEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc------ccccceee-ecCCcceeeec
Confidence 99999997655 556667789999999999998889999999999999999997 44444444 46788999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 382 p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
++|.+ |+.|...|.|..||++.. ..++.....|...|++++|-|.
T Consensus 260 ~~G~~-L~aG~s~G~~i~YD~R~~--------------k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 260 ECGTY-LCAGNSKGELIAYDMRST--------------KAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCceE-EEeecCCceEEEEecccC--------------CCCceEeeecccceeEEEeeec
Confidence 99985 679999999999999974 2445567788999999999874
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=5.9e-22 Score=179.11 Aligned_cols=220 Identities=19% Similarity=0.247 Sum_probs=174.5
Q ss_pred CceEEecCCCCcceeeeecCCCC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997 187 PDLILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (496)
Q Consensus 187 ~~~~l~~h~~~~v~~l~~~p~~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (496)
.....+-+.. .|++++|+|..+ .+|+|+.-|.|-+||+.+..
T Consensus 178 ~~~v~kv~~~-Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----------------------------------- 221 (498)
T KOG4328|consen 178 ILNVAKVTDR-RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----------------------------------- 221 (498)
T ss_pred ecceeEeccc-ceEEEEecccCcceEEEEccCCCcEEEEecCCCC-----------------------------------
Confidence 3345566666 699999999754 78899999999999996321
Q ss_pred CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
.....+..+..|..+|.+|.|+|.+...+++.+.||+|++-|+.......+.........+..+.|+. ....++.|..
T Consensus 222 -~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~ 299 (498)
T KOG4328|consen 222 -KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDN 299 (498)
T ss_pred -CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeec
Confidence 12223467788999999999999998899999999999999998876444444434556778888888 6677777777
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
=|...+||+|+.. .....+.-|...|.+|+++|..+++|||+|.|++++|||++...... ..+.
T Consensus 300 ~G~f~~iD~R~~~-----s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----------sp~l 363 (498)
T KOG4328|consen 300 VGNFNVIDLRTDG-----SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----------SPFL 363 (498)
T ss_pred ccceEEEEeecCC-----ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----------Ccce
Confidence 7799999999843 33556677888999999999999999999999999999999853211 1245
Q ss_pred EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
....|...|.+..|+|.+..++ |.+.|+.|+|||.+
T Consensus 364 st~~HrrsV~sAyFSPs~gtl~--------TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 364 STLPHRRSVNSAYFSPSGGTLL--------TTCQDNEIRVFDSS 399 (498)
T ss_pred ecccccceeeeeEEcCCCCceE--------eeccCCceEEeecc
Confidence 5678999999999999998865 55556999999985
No 155
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.2e-20 Score=172.49 Aligned_cols=269 Identities=21% Similarity=0.364 Sum_probs=189.4
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
.-|.|++|.+ +++ ++||..+|.|.||+..+. +.......|.+ .|++|+...+|. |+||++|+.|
T Consensus 247 k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~------------~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki 310 (626)
T KOG2106|consen 247 KFVLCVTFLE-NGD-VITGDSGGNILIWSKGTN------------RISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKI 310 (626)
T ss_pred eEEEEEEEcC-CCC-EEeecCCceEEEEeCCCc------------eEEeEeeecCC-ceEEEEEecCcc-EeecCccceE
Confidence 6799999999 765 669999999999999766 33444448887 699999998886 5569999999
Q ss_pred EEEecCCccccccCCc------cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 221 VLWSIQDHITSSATDP------ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
..||-. ......... ......+... ++. +.. ...+ +.............+|.+....++.+|+. ..+
T Consensus 311 ~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~d-i~v-GTt--rN~i-L~Gt~~~~f~~~v~gh~delwgla~hps~-~q~ 383 (626)
T KOG2106|consen 311 ILWDDN-YRKLRETELPEQFGPIRTVAEGKGD-ILV-GTT--RNFI-LQGTLENGFTLTVQGHGDELWGLATHPSK-NQL 383 (626)
T ss_pred Eecccc-ccccccccCchhcCCeeEEecCCCc-EEE-eec--cceE-EEeeecCCceEEEEecccceeeEEcCCCh-hhe
Confidence 999932 111111110 0000111111 110 000 0000 00111122234556899999999999998 789
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
+|++.|+.+++|+ ..+ .... ..-..++.|++|+| .+ .+|.|+..|...+.|..+ ..+.++.....+
T Consensus 384 ~T~gqdk~v~lW~--~~k--~~wt-~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~-------~~lv~~~~d~~~ 449 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHK--LEWT-KIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET-------QDLVTIHTDNEQ 449 (626)
T ss_pred eeccCcceEEEcc--CCc--eeEE-EEecCceeEeeccC-cc-eEEEeeccceEEEEeccc-------ceeEEEEecCCc
Confidence 9999999999999 222 2222 34567899999999 67 999999999999999998 334444444899
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 454 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~ 454 (496)
++.++|+|+|. +||.|+.|+.|+||-+...+... .......| .+|+.+.|++++.++.
T Consensus 450 ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y-----------~r~~k~~g--s~ithLDwS~Ds~~~~-------- 507 (626)
T KOG2106|consen 450 LSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKY-----------SRVGKCSG--SPITHLDWSSDSQFLV-------- 507 (626)
T ss_pred eEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEE-----------EEeeeecC--ceeEEeeecCCCceEE--------
Confidence 99999999999 57999999999999998864432 22333344 8999999999888766
Q ss_pred CCCCCCeEEEeecC
Q 010997 455 STGGGGTLQIWRMS 468 (496)
Q Consensus 455 sgg~Dg~i~iw~~~ 468 (496)
+.+.|-.|-.|...
T Consensus 508 ~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 508 SNSGDYEILYWKPS 521 (626)
T ss_pred eccCceEEEEEccc
Confidence 55556899999655
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.6e-22 Score=169.93 Aligned_cols=219 Identities=18% Similarity=0.289 Sum_probs=163.8
Q ss_pred eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997 189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
..|.||.+ .|++++|+.||++|+|++.|++|++|++++-......
T Consensus 80 ~~LKgH~~-~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr---------------------------------- 124 (420)
T KOG2096|consen 80 SVLKGHKK-EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR---------------------------------- 124 (420)
T ss_pred hhhhccCC-ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh----------------------------------
Confidence 36789998 6999999999999999999999999999863211000
Q ss_pred CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc---c--c-----eeeeccCCCCeEEEEecCCCCcE
Q 010997 269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---P--V-----IKVEKAHDADLHCVDWNPLDDNL 338 (496)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~--~-----~~~~~~~~~~v~~i~~sp~~~~~ 338 (496)
.++ ..-..+..+.+.|.||...+++++-...++++|-+...+. + . ......|...+..+-... ++.+
T Consensus 125 -~~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~ 201 (420)
T KOG2096|consen 125 -CIR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKY 201 (420)
T ss_pred -Hhh-ccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceE
Confidence 000 0111234678899999988888888889999998764331 1 1 112234566777777776 7899
Q ss_pred EEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCC
Q 010997 339 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 418 (496)
Q Consensus 339 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 418 (496)
|++++.|..|.|||++ ++.+..+......-+..+.||+|++ +|+++----|++|.+--...-.- .
T Consensus 202 imsas~dt~i~lw~lk-------Gq~L~~idtnq~~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~f-------q 266 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-------GQLLQSIDTNQSSNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGTF-------Q 266 (420)
T ss_pred EEEecCCCcEEEEecC-------CceeeeeccccccccceeeCCCCcE-EEEecCCCCceEEEEEeccCcch-------h
Confidence 9999999999999999 5888888877777888999999995 56777767799999754221110 2
Q ss_pred CCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 419 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 419 ~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.....|.+.||...|..++|+++...++ |.+.||+++|||..
T Consensus 267 ev~rvf~LkGH~saV~~~aFsn~S~r~v--------tvSkDG~wriwdtd 308 (420)
T KOG2096|consen 267 EVKRVFSLKGHQSAVLAAAFSNSSTRAV--------TVSKDGKWRIWDTD 308 (420)
T ss_pred hhhhhheeccchhheeeeeeCCCcceeE--------EEecCCcEEEeecc
Confidence 2356788999999999999999877654 45556999999985
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=4.3e-21 Score=181.84 Aligned_cols=304 Identities=18% Similarity=0.303 Sum_probs=216.0
Q ss_pred cceEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCCCccc---------cCCCCC----------CCCce
Q 010997 131 VKKHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHA---------VLGATN----------SRPDL 189 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~---------~~~~~~----------~~~~~ 189 (496)
.......||.+.|..++|.... .-+||+++.|..|+||.+.-...... ...... .....
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 3456678999999999998743 35899999999999998765431110 000000 01112
Q ss_pred EEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcC
Q 010997 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269 (496)
Q Consensus 190 ~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (496)
.+.||.+ .|+++.|+|.+..|+|++.|+++.+|...+..-......
T Consensus 262 ll~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v--------------------------------- 307 (764)
T KOG1063|consen 262 LLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV--------------------------------- 307 (764)
T ss_pred hhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE---------------------------------
Confidence 3469998 799999999999999999999999998764321110000
Q ss_pred CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 348 (496)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i 348 (496)
.+....+......+..|+|++ +.+++-+..|..++|-..... ........+|...|..|+|+| .|.+|++.+.|-+-
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTT 385 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTT 385 (764)
T ss_pred EeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccce
Confidence 001122445668899999998 789999999999999833221 122334568999999999999 89999999999888
Q ss_pred EEEeCC--------------------CC---C-C----------------------------------------------
Q 010997 349 RMFDRR--------------------NL---T-S---------------------------------------------- 358 (496)
Q Consensus 349 ~iwd~~--------------------~~---~-~---------------------------------------------- 358 (496)
|+|-.- .. . .
T Consensus 386 RlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vp 465 (764)
T KOG1063|consen 386 RLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVP 465 (764)
T ss_pred eeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccc
Confidence 876322 00 0 0
Q ss_pred -----C---------C--------------------------------CCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997 359 -----N---------G--------------------------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 359 -----~---------~--------------------------------~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~ 392 (496)
+ . ....++++-+|...|++++.+|++. ++||++
T Consensus 466 aLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaC 544 (764)
T KOG1063|consen 466 ALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASAC 544 (764)
T ss_pred cccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehh
Confidence 0 0 0111223347899999999999998 788887
Q ss_pred CC-----CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 393 ED-----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 393 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
.. ..|++|+..... ....+.+|.-.|+.++|||++.+|+ +.+.|.++.+|..
T Consensus 545 KS~~~ehAvI~lw~t~~W~---------------~~~~L~~HsLTVT~l~FSpdg~~LL--------svsRDRt~sl~~~ 601 (764)
T KOG1063|consen 545 KSSLKEHAVIRLWNTANWL---------------QVQELEGHSLTVTRLAFSPDGRYLL--------SVSRDRTVSLYEV 601 (764)
T ss_pred hhCCccceEEEEEeccchh---------------hhheecccceEEEEEEECCCCcEEE--------EeecCceEEeeee
Confidence 53 459999998862 2335789999999999999998876 5555699999998
Q ss_pred CCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 468 SDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 468 ~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.+.+. ..-..+.++.|+..|++++|+|
T Consensus 602 ~~~~~--~e~~fa~~k~HtRIIWdcsW~p 628 (764)
T KOG1063|consen 602 QEDIK--DEFRFACLKAHTRIIWDCSWSP 628 (764)
T ss_pred ecccc--hhhhhccccccceEEEEcccCc
Confidence 75432 1222555899999999999998
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.6e-21 Score=167.39 Aligned_cols=251 Identities=19% Similarity=0.329 Sum_probs=180.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEEecCCCcEEEEecCCcccc
Q 010997 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
..+|++...|+|++||..++ +.+..+.+|.. .+..+.|..+ ...+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg------------~~l~~fk~~~~-~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG------------QLLEEFKGPPA-TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred eeEEEEecCCeEEEEeccch------------hhhheecCCCC-cccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 57889999999999999997 55667888887 6788888763 457889999999999999864332
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC-CceeEEEEccCCCceEEEEc----CCCeEEEE
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVTFCPSSAQEFCSVG----DDSCLILW 306 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~----~dg~i~iw 306 (496)
. ...+..+. .+..+++....+ +++++|. .+-.|.+|
T Consensus 108 a--------------------------------------~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lw 148 (376)
T KOG1188|consen 108 A--------------------------------------RISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLW 148 (376)
T ss_pred h--------------------------------------heeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEE
Confidence 1 12233333 345566665454 5677764 36789999
Q ss_pred EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC-C
Q 010997 307 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-S 385 (496)
Q Consensus 307 d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~-~ 385 (496)
|+|..+.+.......|.+.|+++.|+|.+.++|++||.||-|.|||+..... ...+...-.|...|.++.|+.++ .
T Consensus 149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E---eDaL~~viN~~sSI~~igw~~~~yk 225 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE---EDALLHVINHGSSIHLIGWLSKKYK 225 (376)
T ss_pred EeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc---hhhHHHhhcccceeeeeeeecCCcc
Confidence 9999886556666789999999999999999999999999999999987432 23344444578889999999887 2
Q ss_pred CEEEEEeCCCcEEEEECCCCCcccCCCCCC-------------------------------CCCCCeeE-----------
Q 010997 386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-------------------------------TNYPAGLF----------- 423 (496)
Q Consensus 386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~~~~~~~----------- 423 (496)
.|+ +-+......+|++....+....+... ...-...+
T Consensus 226 rI~-clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~ 304 (376)
T KOG1188|consen 226 RIM-CLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSL 304 (376)
T ss_pred eEE-EEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccc
Confidence 254 77778899999998855332222110 00000001
Q ss_pred ----EE-ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 424 ----FQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 424 ----~~-~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.. ..+|...|.++.|.-.+..++ |||.||.+++|...
T Consensus 305 ~~~~a~l~g~~~eiVR~i~~~~~~~~l~--------TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 305 LTEPAILQGGHEEIVRDILFDVKNDVLY--------TGGEDGLLQAWKVE 346 (376)
T ss_pred cCccccccCCcHHHHHHHhhhcccceee--------ccCCCceEEEEecC
Confidence 11 234667788888887666666 88888999999954
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=1.3e-21 Score=183.26 Aligned_cols=122 Identities=16% Similarity=0.413 Sum_probs=102.3
Q ss_pred CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC-CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS-NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (496)
Q Consensus 325 ~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~ 403 (496)
.|+.+.|+|++...||+++.||.|+||.+..... .....+-..+..|...|+++.|+|-...+||+++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 4678899999999999999999999999876432 112356677889999999999999877789999999999999999
Q ss_pred CCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 404 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.. .....+.||.+.|.+++|+|+|..+ | |.+.||+|+||+.+.
T Consensus 709 ~~---------------~~~~~l~gHtdqIf~~AWSpdGr~~-A-------tVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NA---------------KLYSRLVGHTDQIFGIAWSPDGRRI-A-------TVCKDGTLRVYEPRS 751 (1012)
T ss_pred hh---------------hhhheeccCcCceeEEEECCCCcce-e-------eeecCceEEEeCCCC
Confidence 85 3445678999999999999988764 5 555569999999984
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.7e-21 Score=180.73 Aligned_cols=278 Identities=15% Similarity=0.245 Sum_probs=197.8
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
....|.+.|..++|.| ....|++++.||.|.+|+++.... ......+++.+|++|.+ +|.|+++.+++.++++|
T Consensus 289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~----s~~~~~epi~tfraH~g-PVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKK----SAEKDVEPILTFRAHEG-PVLCVVVPSNGEHCYSG 362 (577)
T ss_pred eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCC----ccccceeeeEEEecccC-ceEEEEecCCceEEEee
Confidence 6678999999999999 556899999999999999954211 11234588999999998 79999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.||+|+.|++.......... ........+.||.+.|+.+++|+.. ..|
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~------------------------------dp~vl~~~l~Ghtdavw~l~~s~~~-~~L 411 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSY------------------------------DPSVLSGTLLGHTDAVWLLALSSTK-DRL 411 (577)
T ss_pred ccCceeeeeccCCCCCccccc------------------------------Ccchhccceeccccceeeeeecccc-cce
Confidence 999999999875221100000 0111235688999999999999987 679
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc----
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---- 370 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---- 370 (496)
++|+.||++++|+...... +............++++-.......++...-+.-.++|+.. ...+..+..
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev------~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV------VSDLLIFESSASP 484 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh------hhheeeccccCCC
Confidence 9999999999999877662 22222222234455666441222333333333333444443 222333321
Q ss_pred ---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 371 ---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 371 ---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
....+..+.++|.... ..++..|+.|+++|..+. .+++....|...|+++++.|+|.+++
T Consensus 485 ~~~~~~~in~vVs~~~~~~-~~~~hed~~Ir~~dn~~~---------------~~l~s~~a~~~svtslai~~ng~~l~- 547 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTADI-TFTAHEDRSIRFFDNKTG---------------KILHSMVAHKDSVTSLAIDPNGPYLM- 547 (577)
T ss_pred cccccCccceEEecCCCCe-eEecccCCceeccccccc---------------ccchheeeccceecceeecCCCceEE-
Confidence 1245788999999984 559999999999999885 56777788999999999999999987
Q ss_pred EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK 486 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~ 486 (496)
+|+.|+.+++|.+. ...++.+...|.
T Consensus 548 -------s~s~d~sv~l~kld------~k~~~~es~~~r 573 (577)
T KOG0642|consen 548 -------SGSHDGSVRLWKLD------VKTCVLESTAHR 573 (577)
T ss_pred -------eecCCceeehhhcc------chheeecccccc
Confidence 78888999999997 344444444443
No 161
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-19 Score=175.04 Aligned_cols=312 Identities=15% Similarity=0.176 Sum_probs=221.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ce
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YV 211 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l 211 (496)
+....++...|+++.-+| --+++|.|..+|+|.|+++..+ +.+.+++...+ .|+.++|.-||+ .|
T Consensus 195 v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~d------------kil~sFk~d~g-~VtslSFrtDG~p~l 260 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFD------------KILMSFKQDWG-RVTSLSFRTDGNPLL 260 (910)
T ss_pred EEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccC------------cEEEEEEcccc-ceeEEEeccCCCeeE
Confidence 455667889999999999 7789999999999999999988 66677776544 799999999987 67
Q ss_pred EEecCCCcEEEEecCCccccccCCcccccc-----CCCCCceeccCCCCCCCCCCCCCCCCc--CCeeeeecCCCceeEE
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKS-----AGSSGSIIKQSPKPGDGNDKAADGPSV--GPRGIYNGHEDTVEDV 284 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~l 284 (496)
++|+..|.+.+||++............... .-....+.............+.+...+ ..++.-.||..+..++
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i 340 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI 340 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence 788888999999999875543332211000 000000111111111122222233333 4455667899999999
Q ss_pred EEccCCCceEEEEcCCCeEEEEEccCCCc--------------------------cc-----------------------
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDARVGTS--------------------------PV----------------------- 315 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------~~----------------------- 315 (496)
.|.-.....+.+++.|++++.+++..... +.
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~ 420 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG 420 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence 99855558888999998888887642110 00
Q ss_pred ---------------eeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe---ccCC
Q 010997 316 ---------------IKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF---EGHS 372 (496)
Q Consensus 316 ---------------~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~ 372 (496)
...+ +.....+++++.++ .|++.+.|+..|.|-+|++++ +....++ ..|.
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS------Gi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS------GIHRKSFGDSPAHK 493 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc------CeeecccccCcccc
Confidence 0000 01125678889999 999999999999999999999 7777777 4899
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
.+|+.++...-++ ++++++.+|.+++||..+. .++..+. -...+..+..+.... ++|.+.+
T Consensus 494 ~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k---------------~l~~~l~-l~~~~~~iv~hr~s~-l~a~~~d- 554 (910)
T KOG1539|consen 494 GEVTGLAVDGTNR-LLVSAGADGILKFWDFKKK---------------VLKKSLR-LGSSITGIVYHRVSD-LLAIALD- 554 (910)
T ss_pred CceeEEEecCCCc-eEEEccCcceEEEEecCCc---------------ceeeeec-cCCCcceeeeeehhh-hhhhhcC-
Confidence 9999999988877 5679999999999999874 1222221 233566677776544 4443333
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|-.|+++|+. +...++++.+|.+.|++++|||
T Consensus 555 ------df~I~vvD~~------t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 555 ------DFSIRVVDVV------TRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred ------ceeEEEEEch------hhhhhHHhhccccceeeeEeCC
Confidence 4899999999 8899999999999999999998
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=6.1e-20 Score=159.22 Aligned_cols=246 Identities=16% Similarity=0.282 Sum_probs=178.9
Q ss_pred cCCCceeEEEecC------CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC--cceeeeecCCCC
Q 010997 138 IHPGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEP 209 (496)
Q Consensus 138 ~h~~~V~~l~~~p------~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~--~v~~l~~~p~~~ 209 (496)
...+.|....|-| .+.+++|+.+.+.-|.+||.-++..+... ..-.|.+. +-.+|+|+|||.
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy----------~~ydh~de~taAhsL~Fs~DGe 171 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY----------RAYDHQDEYTAAHSLQFSPDGE 171 (406)
T ss_pred ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch----------hhhhhHHhhhhheeEEecCCCC
Confidence 3455677666642 26789999999999999999998443322 11223221 236899999999
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+|++|. .+.|+++|+...-......+ + ..+.-.+..+-|.+++|+|.
T Consensus 172 qlfaGy-krcirvFdt~RpGr~c~vy~------------------------------t--~~~~k~gq~giisc~a~sP~ 218 (406)
T KOG2919|consen 172 QLFAGY-KRCIRVFDTSRPGRDCPVYT------------------------------T--VTKGKFGQKGIISCFAFSPM 218 (406)
T ss_pred eEeecc-cceEEEeeccCCCCCCcchh------------------------------h--hhcccccccceeeeeeccCC
Confidence 998776 68999999953221110000 0 00112245678899999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCceEe
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
....++.|+....+-||.-.... .+..+.+|.+.|+.+.|.+ +++.|.+|+. |-.|..||+|.. ..++..+
T Consensus 219 ~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~-----~~pv~~L 290 (406)
T KOG2919|consen 219 DSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYS-----RDPVYAL 290 (406)
T ss_pred CCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhc-----cchhhhh
Confidence 87899999999999999876666 5666779999999999999 8888888876 678999999985 4778888
Q ss_pred ccCCC-CEEEEEE--cCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997 369 EGHSA-AVLCVQW--SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 445 (496)
Q Consensus 369 ~~h~~-~i~~l~~--sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l 445 (496)
..|.. .=..|.| .|+++ +||+|+.||.|++||+...+.+ ...+..|..-|+.++++|.-+ +
T Consensus 291 ~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~--------------~sv~~~~sd~vNgvslnP~mp-i 354 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNE--------------VSVTGNYSDTVNGVSLNPIMP-I 354 (406)
T ss_pred hhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCc--------------ccccccccccccceecCcccc-e
Confidence 87766 3334444 57888 6789999999999999986432 233566788999999999754 5
Q ss_pred EEEec
Q 010997 446 VVSVS 450 (496)
Q Consensus 446 ~~s~s 450 (496)
+|+++
T Consensus 355 latss 359 (406)
T KOG2919|consen 355 LATSS 359 (406)
T ss_pred eeecc
Confidence 55554
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.6e-20 Score=163.21 Aligned_cols=257 Identities=21% Similarity=0.340 Sum_probs=187.2
Q ss_pred cCCCceeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEE
Q 010997 138 IHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS 213 (496)
Q Consensus 138 ~h~~~V~~l~~~p~---~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~s 213 (496)
.|...-..++|+-+ ..-++|.|+.-|.|+|.|+.++ +....+.+|.. +|+.+.++|+. +++++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~------------~~~~~~~ghG~-sINeik~~p~~~qlvls 153 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG------------QCSKNYRGHGG-SINEIKFHPDRPQLVLS 153 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh------------hhccceeccCc-cchhhhcCCCCCcEEEE
Confidence 35555566666541 2348888889999999999988 66778999988 79999999985 58999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
||.|.+|++|++++..+...+ .-+.+|.+.|.++.|++++ .+
T Consensus 154 ~SkD~svRlwnI~~~~Cv~Vf-------------------------------------GG~egHrdeVLSvD~~~~g-d~ 195 (385)
T KOG1034|consen 154 ASKDHSVRLWNIQTDVCVAVF-------------------------------------GGVEGHRDEVLSVDFSLDG-DR 195 (385)
T ss_pred ecCCceEEEEeccCCeEEEEe-------------------------------------cccccccCcEEEEEEcCCC-Ce
Confidence 999999999999987664332 2356899999999999999 69
Q ss_pred EEEEcCCCeEEEEEccCCCc--------------------------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997 294 FCSVGDDSCLILWDARVGTS--------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~ 347 (496)
|++|+.|.+|++|++...+. |...+...|...|-|+.|- ++++++-+.++.
T Consensus 196 i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscena 272 (385)
T KOG1034|consen 196 IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENA 272 (385)
T ss_pred eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCce
Confidence 99999999999999984320 1111234577788888884 689999999999
Q ss_pred EEEEeCCCCCCC--------CCCCCceEeccCCCCEEEEE--EcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCC
Q 010997 348 VRMFDRRNLTSN--------GVGSPINKFEGHSAAVLCVQ--WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417 (496)
Q Consensus 348 i~iwd~~~~~~~--------~~~~~~~~~~~h~~~i~~l~--~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~ 417 (496)
|..|-.-.+... .....+.++......|.-+. |.|-++ +||.|...|.|.+||++.....
T Consensus 273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~--------- 342 (385)
T KOG1034|consen 273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPP--------- 342 (385)
T ss_pred EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCc---------
Confidence 999987433211 11233455555556666555 456666 5789999999999999984211
Q ss_pred CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 418 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 418 ~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
......+.-....|.+.+|+.++..+++.+ + |++|.-||.-
T Consensus 343 --~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc-d-------d~~Vwrwdrv 383 (385)
T KOG1034|consen 343 --KCTTLTHSKSGSTVRQTSFSRDGSILVLVC-D-------DGTVWRWDRV 383 (385)
T ss_pred --cCceEEeccccceeeeeeecccCcEEEEEe-C-------CCcEEEEEee
Confidence 122222333456799999999887666544 3 3888888753
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.1e-19 Score=161.65 Aligned_cols=215 Identities=22% Similarity=0.351 Sum_probs=169.5
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEe
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG 214 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg 214 (496)
.-+|+++|..++|+|.+.+.||+|+.|.+|.||++....... ....++..|.||+. .|..++|+|. .+.|+|+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~ltepvv~L~gH~r-rVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLTEPVVELYGHQR-RVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----CcccceEEEeecce-eEEEEeecccchhhHhhc
Confidence 358999999999999999999999999999999998764332 23478899999998 6899999998 5689999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.|.+|.+||+.++... ..+. |.+.|.++.|+.+| .+|
T Consensus 151 g~Dn~v~iWnv~tgeal----------------------------------------i~l~-hpd~i~S~sfn~dG-s~l 188 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEAL----------------------------------------ITLD-HPDMVYSMSFNRDG-SLL 188 (472)
T ss_pred cCCceEEEEeccCCcee----------------------------------------eecC-CCCeEEEEEeccCC-cee
Confidence 99999999999876431 2333 99999999999999 799
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCC-CeEEEEecCCCCcEEEEEc---CCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGS---ADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
++.+.|..|+|||.|+++ .+....+|.+ .-..+.|-. ++.++-||- .+..+.|||..++.. ...+.++..
T Consensus 189 ~TtckDKkvRv~dpr~~~--~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~e---P~~~~elDt 262 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGT--VVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEE---PIALQELDT 262 (472)
T ss_pred eeecccceeEEEcCCCCc--EeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccC---cceeEEecc
Confidence 999999999999999998 4444446654 334455555 677555554 467899999988653 233445543
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.+.|.---|.|+...++++|-.|+.|+-|.+...
T Consensus 263 -SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 263 -SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 4556666788888877778878999999999873
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.2e-19 Score=161.27 Aligned_cols=217 Identities=18% Similarity=0.364 Sum_probs=169.6
Q ss_pred eEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 189 LILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
-.+.||++ +|..++|+|. ...|||||.|.+|.||.+-..... ...
T Consensus 75 P~v~GHt~-~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~---------------------------------~~l 120 (472)
T KOG0303|consen 75 PLVCGHTA-PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT---------------------------------RDL 120 (472)
T ss_pred CCccCccc-cccccccCccCCceeecCCCCceEEEEECCCcccc---------------------------------cCc
Confidence 35789998 7999999996 458999999999999998654321 122
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~ 347 (496)
.+++..+.+|...|.-++|||...++|++++.|.+|.+||+.++. ....+. |..-|.++.|+. +|.+|++.+.|..
T Consensus 121 tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~-dGs~l~TtckDKk 196 (472)
T KOG0303|consen 121 TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKK 196 (472)
T ss_pred ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEecc-CCceeeeecccce
Confidence 366788999999999999999998999999999999999999998 455554 999999999999 9999999999999
Q ss_pred EEEEeCCCCCCCCCCCCceEeccCCCC-EEEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997 348 VRMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (496)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~~h~~~-i~~l~~sp~~~~llas~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (496)
|||||.|. ++.+..-.+|.+. -..+.|-.++. ++.||- .++.+-+||-....+ +..+
T Consensus 197 vRv~dpr~------~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e------------P~~~ 257 (472)
T KOG0303|consen 197 VRVIDPRR------GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE------------PIAL 257 (472)
T ss_pred eEEEcCCC------CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC------------ccee
Confidence 99999999 8888888788763 45677888887 665553 378999999877522 2233
Q ss_pred EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
..+.. .+.|.-=-|.++...+.+ +|-.|+.|+-|.+.+.
T Consensus 258 ~elDt-SnGvl~PFyD~dt~ivYl-------~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 258 QELDT-SNGVLLPFYDPDTSIVYL-------CGKGDSSIRYFEITNE 296 (472)
T ss_pred EEecc-CCceEEeeecCCCCEEEE-------EecCCcceEEEEecCC
Confidence 33333 334444446775555444 4455799999999753
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=6.1e-20 Score=154.90 Aligned_cols=289 Identities=13% Similarity=0.190 Sum_probs=191.1
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
+.+|.+.|+++.|.. ++ +|.+|..-|.|.+|++++. +....+++|....|+.+.--|+ ..|.+-+
T Consensus 10 LRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~------------r~~~~~r~~g~~~it~lq~~p~-d~l~tqg 74 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTE------------RDLPLIRLFGRLFITNLQSIPN-DSLDTQG 74 (323)
T ss_pred eccccchheehhhcc-ch-hhhcccccceEEEEEeecC------------ccchhhhhhccceeeceeecCC-cchhhcC
Confidence 349999999999977 44 4889999999999999998 6666778666657888888887 5688999
Q ss_pred CCCcEEEEecCCccccccCCccc-----c--c-cCCCCCc--eeccCCCCCCCCCCCCCCCCcCCeeee----ecCCCce
Q 010997 216 KDKSVVLWSIQDHITSSATDPAT-----A--K-SAGSSGS--IIKQSPKPGDGNDKAADGPSVGPRGIY----NGHEDTV 281 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~-----~--~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v 281 (496)
+|+.+.+|++............. . . ....... ........ ......-+......+... .+..+.+
T Consensus 75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg-sde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG-SDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcc-cchhhhhccCccceeEccCchhccccCce
Confidence 99999999998632211110000 0 0 0000000 00000000 000111111111111111 1234566
Q ss_pred eEEEEccC-CC-ceEEEEcCCCeEEEEEccCCCc--------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997 282 EDVTFCPS-SA-QEFCSVGDDSCLILWDARVGTS--------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (496)
Q Consensus 282 ~~l~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw 351 (496)
.+..+... +. -++++|-++|.+.+||+.++.. +.......|..+|.++.+.+ .-..=++|+.+..+..|
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceee
Confidence 66665332 22 3567788999999999998631 12334457899999999988 55555778888889999
Q ss_pred eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC
Q 010997 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 431 (496)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 431 (496)
.+...... ...-.++.-..-.|..+..-||++ ||||++.|++||||..++. ..+..+.-|.+
T Consensus 233 Sl~~s~gs--lq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl---------------~pLAVLkyHsa 294 (323)
T KOG0322|consen 233 SLNHSTGS--LQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSA 294 (323)
T ss_pred eeccccCc--ccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC---------------Cchhhhhhhhc
Confidence 88763211 112222333455688999999998 8999999999999999986 45666778999
Q ss_pred CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
.|++++|+|+.+ ++| .+|.|++|.+|++
T Consensus 295 gvn~vAfspd~~-lmA-------aaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPDCE-LMA-------AASKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCCCc-hhh-------hccCCceEEeeec
Confidence 999999999755 455 5566699999986
No 167
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.8e-19 Score=174.93 Aligned_cols=224 Identities=19% Similarity=0.302 Sum_probs=176.2
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
|...|.+++. ..+.|++|+.+++|.+|.+..+ .....+...+- ++.+++++.+|+++|.||.|-
T Consensus 55 ~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~------------~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~ 118 (933)
T KOG1274|consen 55 SGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG------------EEDTILARFTL-PIRDLAVSGSGKMIAAGSDDT 118 (933)
T ss_pred cCceeEEEee---cccceEEeeccceEEEeeCCCC------------Cccceeeeeec-cceEEEEecCCcEEEeecCce
Confidence 7778888886 4458999999999999999887 22323333444 688999999999999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|++-+..+... ...+.+|.++|.++.|+|.+ .+||+.+
T Consensus 119 ~vK~~~~~D~s~----------------------------------------~~~lrgh~apVl~l~~~p~~-~fLAvss 157 (933)
T KOG1274|consen 119 AVKLLNLDDSSQ----------------------------------------EKVLRGHDAPVLQLSYDPKG-NFLAVSS 157 (933)
T ss_pred eEEEEeccccch----------------------------------------heeecccCCceeeeeEcCCC-CEEEEEe
Confidence 999999875322 37788999999999999999 8999999
Q ss_pred CCCeEEEEEccCCCccceeeec--------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997 299 DDSCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 369 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~--------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~- 369 (496)
.||.|++||+.++. +..++. .....+..++|+| ++..||....|+.|++|+... +.....+.
T Consensus 158 ~dG~v~iw~~~~~~--~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~------we~~f~Lr~ 228 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGI--LSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKG------WELQFKLRD 228 (933)
T ss_pred cCceEEEEEcccch--hhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCC------ceeheeecc
Confidence 99999999999876 222221 1245678899999 777778888999999999998 66666654
Q ss_pred -cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 370 -GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 370 -~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
.+...+..++|+|+|.| ||+++.||.|.|||..+... ......|.+++|.|+.+.+-+.
T Consensus 229 ~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t~~~-------------------~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDTHER-------------------HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred cccccceEEEEEcCCCcE-EeeeccCCcEEEEecccchh-------------------ccccceeEEEecCCCCCeeEEE
Confidence 34455999999999997 58999999999999987310 1123478899999987754433
No 168
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.1e-19 Score=167.82 Aligned_cols=284 Identities=19% Similarity=0.269 Sum_probs=201.8
Q ss_pred cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCc-EEEEEeCCCcEEEEeCC
Q 010997 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVE 171 (496)
Q Consensus 93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-~lat~~~dg~i~iwd~~ 171 (496)
++|+.+.++.||.+.. ...+......+.|.||+|+|.... +||++ ....+.|-+..
T Consensus 416 asGsdDGtvriWEi~T----------------------gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~ 472 (733)
T KOG0650|consen 416 ASGSDDGTVRIWEIAT----------------------GRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPI 472 (733)
T ss_pred eecCCCCcEEEEEeec----------------------ceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCcc
Confidence 3567788888887642 234556666779999999994333 44444 44456666654
Q ss_pred CCCCccc-----cCC-----CC---------------CCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEE
Q 010997 172 AQPNRHA-----VLG-----AT---------------NSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLW 223 (496)
Q Consensus 172 ~~~~~~~-----~~~-----~~---------------~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iw 223 (496)
-+..... .+. .. ...-+...-.|.. .|..+.|+..|.||++... ...|.|.
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCceEEEeccCCCcceEEEE
Confidence 4311100 000 00 0111223334544 6899999999999998765 3578999
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeE
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 303 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 303 (496)
++...... ..|.-..+.|.++.|+|..+.+|+ ++ -..|
T Consensus 552 QLSK~~sQ----------------------------------------~PF~kskG~vq~v~FHPs~p~lfV-aT-q~~v 589 (733)
T KOG0650|consen 552 QLSKRKSQ----------------------------------------SPFRKSKGLVQRVKFHPSKPYLFV-AT-QRSV 589 (733)
T ss_pred eccccccc----------------------------------------CchhhcCCceeEEEecCCCceEEE-Ee-ccce
Confidence 88754321 223334567899999999855444 43 3679
Q ss_pred EEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC
Q 010997 304 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383 (496)
Q Consensus 304 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 383 (496)
+|||+.... ++..+......|..++.+| .|.-|+.|+.|+.+..||+.-. .++..++..|...+++|+|++.
T Consensus 590 RiYdL~kqe--lvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls-----skPyk~lr~H~~avr~Va~H~r 661 (733)
T KOG0650|consen 590 RIYDLSKQE--LVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS-----SKPYKTLRLHEKAVRSVAFHKR 661 (733)
T ss_pred EEEehhHHH--HHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC-----cchhHHhhhhhhhhhhhhhccc
Confidence 999998755 5566666778899999999 8999999999999999999863 3788999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC----cceEEecCCCCcEEEEecCCCCCCCCC
Q 010997 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK----VVDFHWNASDPWTVVSVSDDCDSTGGG 459 (496)
Q Consensus 384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----V~~~~~~p~~~~l~~s~s~d~~sgg~D 459 (496)
-+ |||+|+.||.+.||--.-...... +.....+..+.||... |.++.|+|..+||+ |+|.|
T Consensus 662 yP-Lfas~sdDgtv~Vfhg~VY~Dl~q------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLf--------sAGAd 726 (733)
T KOG0650|consen 662 YP-LFASGSDDGTVIVFHGMVYNDLLQ------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLF--------SAGAD 726 (733)
T ss_pred cc-eeeeecCCCcEEEEeeeeehhhhc------CCceEeeeeccCceeecccceEeecccCCCceEE--------ecCCC
Confidence 88 899999999999986543222111 1223456678888765 89999999999999 78888
Q ss_pred CeEEEe
Q 010997 460 GTLQIW 465 (496)
Q Consensus 460 g~i~iw 465 (496)
|+|++|
T Consensus 727 ~tirlf 732 (733)
T KOG0650|consen 727 GTIRLF 732 (733)
T ss_pred ceEEee
Confidence 999998
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.1e-19 Score=162.15 Aligned_cols=184 Identities=21% Similarity=0.334 Sum_probs=140.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
...+|..+.|.+...+.||||+.|..|+||-+......... ........|..|+. +|+++.|+|+|..|+||+.+|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~-aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTR-AVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcc-eeEEEEEcCCcCeeeecCCCc
Confidence 34579999999966669999999999999999877433210 12234456778887 799999999999999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|.+|-...-... ... . ....+.........+.+|...|.+++|+|++ +++++++
T Consensus 88 ~v~lWk~~~~~~~---~~d--------------------~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s 142 (434)
T KOG1009|consen 88 EVFLWKQGDVRIF---DAD--------------------T-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGS 142 (434)
T ss_pred eEEEEEecCcCCc---ccc--------------------c-hhhhCccceEEEEEecccccchhhhhccCCC-ceeeeee
Confidence 9999987631000 000 0 0000112233346778899999999999999 8999999
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~ 354 (496)
.|..+++||++.+. ....+..|...+..++|.| -.+++++-+.|...+.+.+.
T Consensus 143 ~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ccceEEEEEeccce--eEeeccccccccceeecch-hhhhhhhhccCcccceeeee
Confidence 99999999999998 6777889999999999999 78888888888755555543
No 170
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.8e-19 Score=166.07 Aligned_cols=247 Identities=17% Similarity=0.213 Sum_probs=189.5
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
+-.+.|-.++|++ ++ .|.+.+.+|.|.-||+.+. ++...+....+ +|++++.+|.+..++.|+.|
T Consensus 67 ~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwDl~~l------------k~~~~~d~~gg-~IWsiai~p~~~~l~Igcdd 131 (691)
T KOG2048|consen 67 PEDRSIESLAWAE-GG-RLFSSGLSGSITEWDLHTL------------KQKYNIDSNGG-AIWSIAINPENTILAIGCDD 131 (691)
T ss_pred CCCCceeeEEEcc-CC-eEEeecCCceEEEEecccC------------ceeEEecCCCc-ceeEEEeCCccceEEeecCC
Confidence 3457899999996 44 5668888999999999998 55555555554 79999999999999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|.+..++...+... ....|...++.|.++.|+|++ ..+++|
T Consensus 132 Gvl~~~s~~p~~I~--------------------------------------~~r~l~rq~sRvLslsw~~~~-~~i~~G 172 (691)
T KOG2048|consen 132 GVLYDFSIGPDKIT--------------------------------------YKRSLMRQKSRVLSLSWNPTG-TKIAGG 172 (691)
T ss_pred ceEEEEecCCceEE--------------------------------------EEeecccccceEEEEEecCCc-cEEEec
Confidence 97777776644321 113455567899999999999 779999
Q ss_pred cCCCeEEEEEccCCCccceeee------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 298 GDDSCLILWDARVGTSPVIKVE------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
+.||.|++||..++....+.+. +....-|.++.|-. ...|++|...|+|.+||... +..+..+..|
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~------gTLiqS~~~h 244 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIF------GTLIQSHSCH 244 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccC------cchhhhhhhh
Confidence 9999999999998873221111 11233466777764 67899999999999999998 8999999999
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
.+.|.+++..+++.+++ +++.|+.|.-|.....+.+ .........|...|.+++..++ .++
T Consensus 245 ~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~~~~-----------wv~~~~r~~h~hdvrs~av~~~---~l~---- 305 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVF-SAGVDPKIIQYSLTTNKSE-----------WVINSRRDLHAHDVRSMAVIEN---ALI---- 305 (691)
T ss_pred hcceeEEEEcCCCCeEE-EccCCCceEEEEecCCccc-----------eeeeccccCCcccceeeeeecc---eEE----
Confidence 99999999999988765 8888999999888774331 1223334678888999998875 344
Q ss_pred CCCCCCCCCeEEEeecC
Q 010997 452 DCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~ 468 (496)
+||.|.++.+-...
T Consensus 306 ---sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 306 ---SGGRDFTLAICSSR 319 (691)
T ss_pred ---ecceeeEEEEcccc
Confidence 66677888776655
No 171
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.9e-19 Score=161.62 Aligned_cols=294 Identities=23% Similarity=0.355 Sum_probs=213.5
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ecCCCCcceeeeecCC--CCc
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPT--EPY 210 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~h~~~~v~~l~~~p~--~~~ 210 (496)
.++-.|.|.|+.|.|.. .+..|++|+.|..|.+||.... .+...+ .||.. .|+.-.|-|. ..-
T Consensus 136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~------------~~~l~f~SGH~~-NvfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSG------------SPKLSFESGHCN-NVFQAKFIPFSGDRT 201 (559)
T ss_pred hcccCCCCccceeeecc-cCceeeccCccceEEeehhhcc------------Cccccccccccc-chhhhhccCCCCCcC
Confidence 35568999999999998 8999999999999999999887 333333 46776 4778888886 347
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|++++.||.|++=.+..... .+-...+..|.++|.-++.-|+.
T Consensus 202 i~~~s~dgqvr~s~i~~t~~-------------------------------------~e~t~rl~~h~g~vhklav~p~s 244 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGY-------------------------------------VENTKRLAPHEGPVHKLAVEPDS 244 (559)
T ss_pred ceeccccCceeeeeeccccc-------------------------------------eecceecccccCccceeeecCCC
Confidence 99999999999977643211 11124566799999999999999
Q ss_pred CceEEEEcCCCeEEEEEccCCCccce-eeeccCCC---CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVI-KVEKAHDA---DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~---~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
+..|.+++.|+.+.-+|++....... .....+.. ..+.|+.+|.+.+.+++|+.|-.+++||.+..........+.
T Consensus 245 p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~ 324 (559)
T KOG1334|consen 245 PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLD 324 (559)
T ss_pred CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhh
Confidence 99999999999999999998762211 22233444 678999999777899999999999999999876544344455
Q ss_pred EeccC------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE-EecCCCC--CcceEE
Q 010997 367 KFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF-QHAGHRD--KVVDFH 437 (496)
Q Consensus 367 ~~~~h------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~--~V~~~~ 437 (496)
++..| .-.|++++|+.++.-+||+-. |-.|++|.-.. +.-....... .....+. ...||.. .|..+-
T Consensus 325 ~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~~~~-~~G~~p~~~s--~~~~~~k~vYKGHrN~~TVKgVN 400 (559)
T KOG1334|consen 325 KFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFNKSM-GDGSEPDPSS--PREQYVKRVYKGHRNSRTVKGVN 400 (559)
T ss_pred hcCCccccccCcccceeEEecCCccceeeeec-ccceEEecccc-ccCCCCCCCc--chhhccchhhcccccccccceee
Confidence 55433 346999999988877885554 77899984332 2111110000 0011222 2678875 356666
Q ss_pred e-cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 438 W-NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 438 ~-~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
| -|...+ ++|+|+ =|.|.||+-. +++.+.-+++-..-|++|-.||
T Consensus 401 FfGPrsEy-VvSGSD-------CGhIFiW~K~------t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 401 FFGPRSEY-VVSGSD-------CGHIFIWDKK------TGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred eccCccce-EEecCc-------cceEEEEecc------hhHHHHHhhcccceEeccCCCC
Confidence 5 454444 554443 4999999999 8999999999988999998887
No 172
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.6e-19 Score=160.16 Aligned_cols=230 Identities=12% Similarity=0.240 Sum_probs=181.6
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
.|+++.|+|..+.|++|+.||+++||.++.... ..++.+.-.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------~~lqS~~l~ 256 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------PKLQSIHLE 256 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------------------hhheeeeec
Confidence 589999999999999999999999999874322 223445555
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCC-CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
..+|.+.+|+|+|...+++++.-..++.||+.+.+...+....++. ..+..+..+| ++++||..+..|.|.|....+
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT- 334 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT- 334 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh-
Confidence 6799999999999658999999999999999988744444444444 4677888999 899999999999999999888
Q ss_pred CCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 436 (496)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 436 (496)
+..+.+++ -.+.|..++|+.++..|++ ++.+|.|.+||++... . ...+.-.|.. .=+.+
T Consensus 335 -----~eli~s~K-ieG~v~~~~fsSdsk~l~~-~~~~GeV~v~nl~~~~-~------------~~rf~D~G~v-~gts~ 393 (514)
T KOG2055|consen 335 -----KELITSFK-IEGVVSDFTFSSDSKELLA-SGGTGEVYVWNLRQNS-C------------LHRFVDDGSV-HGTSL 393 (514)
T ss_pred -----hhhhheee-eccEEeeEEEecCCcEEEE-EcCCceEEEEecCCcc-e------------EEEEeecCcc-ceeee
Confidence 77888887 5788999999999987764 4558999999999841 1 1122222211 12567
Q ss_pred EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.++++.+++ +|+..|.|.|||..........+++..+..-...|++++|+|
T Consensus 394 ~~S~ng~ylA--------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 394 CISLNGSYLA--------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred eecCCCceEE--------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 7778887654 566669999999987777777789999999999999999987
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1.9e-19 Score=156.47 Aligned_cols=268 Identities=15% Similarity=0.251 Sum_probs=186.3
Q ss_pred ecCCCceeEEEecC----CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCC---
Q 010997 137 IIHPGEVNRIRELP----QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT--- 207 (496)
Q Consensus 137 ~~h~~~V~~l~~~p----~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~--- 207 (496)
..|..+|..++|.+ +....+|+.+.+ .+.+|........ +.+.... .|.. .-+.++|+-+
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i---------r~lq~y~D~d~~E-sfytcsw~yd~~~ 103 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI---------RLLQSYADEDHDE-SFYTCSWSYDSNT 103 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce---------eeeeeccCCCCCc-ceEEEEEEecCCC
Confidence 46888999999985 456688888765 7889987765211 1112221 2333 4677888754
Q ss_pred -CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 208 -EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 208 -~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
+.+||.|+.-|.|+|.|+.+++. ...+.+|...|+.+.+
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~----------------------------------------~~~~~ghG~sINeik~ 143 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQC----------------------------------------SKNYRGHGGSINEIKF 143 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhh----------------------------------------ccceeccCccchhhhc
Confidence 34899999999999999986544 2667899999999999
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC------
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT------ 357 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~------ 357 (496)
+|..+++++++|.|.+|++|++++.. ++..+ .+|.+.|.++.|++ ++.+|++++.|.+|++|++....
T Consensus 144 ~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 144 HPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred CCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 99999999999999999999999988 44443 57999999999999 89999999999999999998321
Q ss_pred ------CCCCC-------CCce---EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe
Q 010997 358 ------SNGVG-------SPIN---KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 421 (496)
Q Consensus 358 ------~~~~~-------~~~~---~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 421 (496)
+++.. .++- +-.-|...|-|+.|-- .+ +.+-|.++.|..|..-..++........ .....
T Consensus 221 ~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~-ilSkscenaI~~w~pgkl~e~~~~vkp~-es~~T 296 (385)
T KOG1034|consen 221 LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DF-ILSKSCENAIVCWKPGKLEESIHNVKPP-ESATT 296 (385)
T ss_pred hhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hh-eeecccCceEEEEecchhhhhhhccCCC-cccee
Confidence 00000 1111 2245788888888864 44 4588889999999884433322111000 01112
Q ss_pred eEEEecCCCCCcce--EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 422 LFFQHAGHRDKVVD--FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 422 ~~~~~~~h~~~V~~--~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
.+..+.-....|.- ++|.|-+..++ .|+..|.|.+||+++.
T Consensus 297 i~~~~~~~~c~iWfirf~~d~~~~~la--------~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 297 ILGEFDYPMCDIWFIRFAFDPWQKMLA--------LGNQSGKVYVWDLDNN 339 (385)
T ss_pred eeeEeccCccceEEEEEeecHHHHHHh--------hccCCCcEEEEECCCC
Confidence 22222222334444 45666566655 6777899999999854
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=168.73 Aligned_cols=256 Identities=16% Similarity=0.300 Sum_probs=189.8
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~ 221 (496)
.|+.++|-| +|..|+.+..+ .+.|||...+ ....++++|.+ .|++++|+.+|++++||+.|+.|.
T Consensus 14 ci~d~afkP-DGsqL~lAAg~-rlliyD~ndG------------~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKP-DGTQLILAAGS-RLLVYDTSDG------------TLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred chheeEECC-CCceEEEecCC-EEEEEeCCCc------------ccccccccccc-eEEEEEEccCCceeccCCCceeEE
Confidence 799999999 55555444433 7999999988 66778999999 799999999999999999999999
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
+|+..-.. ..--.|.+.|.|+.|+|-. ..+++|+-.
T Consensus 79 ~W~~klEG------------------------------------------~LkYSH~D~IQCMsFNP~~-h~LasCsLs- 114 (1081)
T KOG1538|consen 79 IWTSKLEG------------------------------------------ILKYSHNDAIQCMSFNPIT-HQLASCSLS- 114 (1081)
T ss_pred Eecccccc------------------------------------------eeeeccCCeeeEeecCchH-HHhhhcchh-
Confidence 99864210 1123699999999999988 778888753
Q ss_pred eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc
Q 010997 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381 (496)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 381 (496)
..-+|...... .. . ......+.+.+|.. +|++|+.|-.+|+|.|-+-.... ...+..-.+..++|.+++|+
T Consensus 115 dFglWS~~qK~--V~-K-~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 115 DFGLWSPEQKS--VS-K-HKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred hccccChhhhh--HH-h-hhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEec
Confidence 46678765443 11 1 23456789999999 99999999999999987544211 11222234577899999999
Q ss_pred CCCC----CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 382 PDKS----SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 382 p~~~----~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
|... -+++......++.+|.++.. .+..-..-.-.-.++++.++|.+++ .||
T Consensus 186 p~sg~G~~di~aV~DW~qTLSFy~LsG~----------------~Igk~r~L~FdP~CisYf~NGEy~L--------iGG 241 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVADWGQTLSFYQLSGK----------------QIGKDRALNFDPCCISYFTNGEYIL--------LGG 241 (1081)
T ss_pred CCCCCCccceEEEEeccceeEEEEecce----------------eecccccCCCCchhheeccCCcEEE--------Ecc
Confidence 9642 26778888888888888652 1111111122346788999999999 677
Q ss_pred CCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 458 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 458 ~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.|+.+++|.-. |-.+.++-.....|++|+.+|
T Consensus 242 sdk~L~~fTR~-------GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 242 SDKQLSLFTRD-------GVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred CCCceEEEeec-------CeEEeeccccceeEEEEEEcc
Confidence 78999999765 556666666778899998877
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=1.8e-20 Score=180.96 Aligned_cols=261 Identities=23% Similarity=0.345 Sum_probs=200.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
.++.+|-.+|.|+.|.. .+.++++|++|..|+||..++. .++..++||.+ .|+.++.+.++.++++
T Consensus 184 krLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~------------~~lAs~rGhs~-ditdlavs~~n~~iaa 249 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETA------------RCLASCRGHSG-DITDLAVSSNNTMIAA 249 (1113)
T ss_pred HHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccch------------hhhccCCCCcc-ccchhccchhhhhhhh
Confidence 35679999999999988 8999999999999999998887 77889999998 6899999998889999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
++.|..|++|.+.++ .++..+.+|++.|++++|+|..
T Consensus 250 aS~D~vIrvWrl~~~----------------------------------------~pvsvLrghtgavtaiafsP~~--- 286 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDG----------------------------------------APVSVLRGHTGAVTAIAFSPRA--- 286 (1113)
T ss_pred cccCceEEEEecCCC----------------------------------------chHHHHhccccceeeeccCccc---
Confidence 999999999998643 4457889999999999999854
Q ss_pred EEEEcCCCeEEEEEccCCCccceee---ec-cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKV---EK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~---~~-~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
+.+.||++++||.+-.- .+.. .. ....-+.++.|.. ++.-++||+.|+.-..|.+....
T Consensus 287 --sss~dgt~~~wd~r~~~--~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~------------ 349 (1113)
T KOG0644|consen 287 --SSSDDGTCRIWDARLEP--RIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA------------ 349 (1113)
T ss_pred --cCCCCCceEeccccccc--cccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhh------------
Confidence 78899999999998211 1111 11 2235566777777 78899999999999888776522
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
.+...+.-+.++.+-..+.+++-.+-.+++|++..+ .+...+.+|...+..+.++|-++.+..+
T Consensus 350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------------~l~H~l~ghsd~~yvLd~Hpfn~ri~ms- 413 (1113)
T KOG0644|consen 350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------------QLLHNLMGHSDEVYVLDVHPFNPRIAMS- 413 (1113)
T ss_pred hhccceEEEeccccccccceeeeeeeEeeeeecccc---------------hhhhhhcccccceeeeeecCCCcHhhhh-
Confidence 222223333333333335567777889999999885 4566678999999999999999988875
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|.||...|||+. .+.+++......+.+.+.+||+
T Consensus 414 ------ag~dgst~iwdi~------eg~pik~y~~gh~kl~d~kFSq 448 (1113)
T KOG0644|consen 414 ------AGYDGSTIIWDIW------EGIPIKHYFIGHGKLVDGKFSQ 448 (1113)
T ss_pred ------ccCCCceEeeecc------cCCcceeeecccceeeccccCC
Confidence 4555999999998 3444433333345567777775
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.5e-18 Score=142.67 Aligned_cols=254 Identities=17% Similarity=0.217 Sum_probs=174.9
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~ 221 (496)
.|.+-+++| .+++|++|+.+|.|.++.+......... .....++...++|.+ +|+.++|. ..+|++|+ ||.|+
T Consensus 12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~--~~gk~~iv~eqahdg-piy~~~f~--d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAE--PPGKLKIVPEQAHDG-PIYYLAFH--DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccC--CCCCcceeeccccCC-Ceeeeeee--hhheeecc-CceEE
Confidence 366778899 8899999999999999998765433221 112245556688987 79999997 55788887 69999
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
-|..+.........+ +|.... |.++-...--.|+++...|.. +-++.++.|+
T Consensus 85 gw~W~E~~es~~~K~-------------------------lwe~~~--P~~~~~~evPeINam~ldP~e-nSi~~AgGD~ 136 (325)
T KOG0649|consen 85 GWEWNEEEESLATKR-------------------------LWEVKI--PMQVDAVEVPEINAMWLDPSE-NSILFAGGDG 136 (325)
T ss_pred Eeeehhhhhhccchh-------------------------hhhhcC--ccccCcccCCccceeEeccCC-CcEEEecCCe
Confidence 998875432211111 111110 011101122468899999887 4556666899
Q ss_pred eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---------C-
Q 010997 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---------H- 371 (496)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---------h- 371 (496)
.++-||+++++ ....+++|++.|.++.--. ....+++|+.||++|+||.++ .+.+..+.. |
T Consensus 137 ~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt------~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 137 VIYQVDLEDGR--IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKT------QKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEEEEEecCCE--EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccc------cceeEEeccccChhhcCccc
Confidence 99999999999 7788999999999999854 566789999999999999999 666666542 2
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
...|.+++-+. .++ ++|+ .-.+.+|.++.. ....++.+.+| |..+.|.. ..++
T Consensus 208 g~wigala~~e--dWl-vCGg-Gp~lslwhLrss-------------e~t~vfpipa~---v~~v~F~~--d~vl----- 260 (325)
T KOG0649|consen 208 GKWIGALAVNE--DWL-VCGG-GPKLSLWHLRSS-------------ESTCVFPIPAR---VHLVDFVD--DCVL----- 260 (325)
T ss_pred CceeEEEeccC--ceE-EecC-CCceeEEeccCC-------------CceEEEecccc---eeEeeeec--ceEE-----
Confidence 23466666654 444 3444 668999999983 33566666654 56667764 3344
Q ss_pred CCCCCCCCCeEEEeecCC
Q 010997 452 DCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~ 469 (496)
++|..+.|.-|.+..
T Consensus 261 ---~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 261 ---IGGEGNHVQSYTLNG 275 (325)
T ss_pred ---Eeccccceeeeeecc
Confidence 444458899998874
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=3.8e-18 Score=166.45 Aligned_cols=241 Identities=22% Similarity=0.400 Sum_probs=176.0
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCcccccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKS 241 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~ 241 (496)
+.+.||++.... .|...+.... .|+++.|+|.. .+|+.|..+|.|.+||++.+.....
T Consensus 222 ~~~~vW~~~~p~-----------~Pe~~~~~~s--~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------- 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-----------TPELVLESPS--EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------- 280 (555)
T ss_pred ceEEEEecCCCC-----------CceEEEecCC--ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--------
Confidence 479999998761 4555555544 58999999974 5788888999999999986543210
Q ss_pred CCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC-ceEEEEcCCCeEEEEEccCCCccceeee-
Q 010997 242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPVIKVE- 319 (496)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 319 (496)
.........|..+|..+.|..+-. .-|++++.||.|..|+++.-..|.....
T Consensus 281 --------------------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~ 334 (555)
T KOG1587|consen 281 --------------------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL 334 (555)
T ss_pred --------------------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence 001123456899999999965431 4589999999999999887553321111
Q ss_pred ---------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC--CCCCceEeccCCCCEEEEEEcCCCCCEE
Q 010997 320 ---------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVF 388 (496)
Q Consensus 320 ---------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~~~~~~~h~~~i~~l~~sp~~~~ll 388 (496)
......+++++|.+.+.+.|+.|+.+|.|.--+........ ..+.+..+..|.++|+++.++|-+..+|
T Consensus 335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 12235789999999888999999999998874444332211 1133456677899999999999998888
Q ss_pred EEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 389 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.+++ |.+|+||..... ..+++.+..+...|++++|||..+.+++++..| |.|.|||+.
T Consensus 415 ls~g-DW~vriWs~~~~--------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~-------G~l~iWDLl 472 (555)
T KOG1587|consen 415 LSVG-DWTVRIWSEDVI--------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD-------GNLDIWDLL 472 (555)
T ss_pred eeec-cceeEeccccCC--------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCC-------Cceehhhhh
Confidence 7777 999999998732 134555666777899999999999999876665 999999998
Q ss_pred CCCc
Q 010997 469 DLIY 472 (496)
Q Consensus 469 ~~~~ 472 (496)
....
T Consensus 473 ~~~~ 476 (555)
T KOG1587|consen 473 QDDE 476 (555)
T ss_pred cccc
Confidence 5433
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=4.4e-17 Score=160.76 Aligned_cols=269 Identities=24% Similarity=0.466 Sum_probs=201.3
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeee-cCCCC-ceE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM-CPTEP-YVL 212 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~-~p~~~-~l~ 212 (496)
....|...|.++.+.+ .+..++.++.|+.+.+|+..... .....+.++....+..+.+ ++++. +++
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGE-----------KLIKSLEGLHDSSVSKLALSSPDGNSILL 127 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCc-----------eeEEEEeccCCCceeeEEEECCCcceEEe
Confidence 4568999999999999 77888888899999999998872 1344455533223556666 77777 555
Q ss_pred EecC-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 213 SGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 213 sg~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
..+. |+.+.+|+... .......+..|...|.+++|+|++
T Consensus 128 ~~~~~d~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~- 167 (466)
T COG2319 128 ASSSLDGTVKLWDLST---------------------------------------PGKLIRTLEGHSESVTSLAFSPDG- 167 (466)
T ss_pred ccCCCCccEEEEEecC---------------------------------------CCeEEEEEecCcccEEEEEECCCC-
Confidence 5444 99999999874 012236678899999999999999
Q ss_pred ceEEEEcC-CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCce-Ee
Q 010997 292 QEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN-KF 368 (496)
Q Consensus 292 ~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~ 368 (496)
..+++++. |+.+++|++.... ....+..|...|.+++|+| ++. ++++++.|+.|++||.+. +..+. .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~ 238 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST------GKLLRSTL 238 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC------CcEEeeec
Confidence 57777775 9999999999855 5666677999999999998 776 666669999999998885 56666 68
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
.+|...+ -..|+|++. ++++++.|+.+++|++..... .+....+|...|.++.|+|++..+++
T Consensus 239 ~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~- 301 (466)
T COG2319 239 SGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSS--------------LLRTLSGHSSSVLSVAFSPDGKLLAS- 301 (466)
T ss_pred CCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCc--------------EEEEEecCCccEEEEEECCCCCEEEE-
Confidence 8888875 448999995 566999999999999987421 12222688899999999997766663
Q ss_pred ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH--HHhccceEEEecc
Q 010997 449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE--LEKFKAHVISCTS 494 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~--l~~h~~~v~~~~~ 494 (496)
++ .|+.+++|+..... .... ...|...+..++|
T Consensus 302 ~~-------~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 302 GS-------SDGTVRLWDLETGK------LLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred ee-------CCCcEEEEEcCCCc------eEEEeeecccCCceEEEEE
Confidence 43 44889999887432 1122 3466666766665
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=160.77 Aligned_cols=226 Identities=21% Similarity=0.354 Sum_probs=168.3
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCce-EEecCCCCcceeeeecCC--CCce
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPT--EPYV 211 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~l~~h~~~~v~~l~~~p~--~~~l 211 (496)
.+.||+|.|+|+.|+. +|.+||+|++|-.+.|||.... ++++ .-.||.. -|+++.|-|. +..+
T Consensus 45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~------------KllhsI~TgHta-NIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEY------------KLLHSISTGHTA-NIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhccccceecceeecC-CCCEEeecCCcceEEeecchhc------------ceeeeeeccccc-ceeEEeeeccCCCeEE
Confidence 4579999999999999 9999999999999999998865 4444 3468988 5899999996 4589
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
+||+.|..|+++|+....... .+-....+...+..|...|..++-.|.++
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~------------------------------~d~~~~~~~~~~~cht~rVKria~~p~~P 160 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGG------------------------------MDHGMEETTRCWSCHTDRVKRIATAPNGP 160 (758)
T ss_pred EeccCcceEEEEecccccccc------------------------------cccCccchhhhhhhhhhhhhheecCCCCC
Confidence 999999999999997532211 01122334466788999999999999999
Q ss_pred ceEEEEcCCCeEEEEEccCCCc--cc------eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC---
Q 010997 292 QEFCSVGDDSCLILWDARVGTS--PV------IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--- 360 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~--~~------~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~--- 360 (496)
+.|.++++||+|+-||+|.... +. .......--...|+..+|.+..+||+|+.|-..++||.|...+..
T Consensus 161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~ 240 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD 240 (758)
T ss_pred ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC
Confidence 9999999999999999998541 00 000111223567999999889999999999999999965432110
Q ss_pred ---------CCCCceEec-cCC-----------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 361 ---------VGSPINKFE-GHS-----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 361 ---------~~~~~~~~~-~h~-----------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
...++..|. +|- ..++-+.|+|+|..||++-+.+ .|+++|+...
T Consensus 241 ~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~ 305 (758)
T KOG1310|consen 241 GTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNED 305 (758)
T ss_pred ccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCC
Confidence 011233331 221 1256789999999888777644 7999999874
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.3e-18 Score=149.69 Aligned_cols=197 Identities=21% Similarity=0.327 Sum_probs=151.6
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
..+|++-..|+|++||..++. .+..+.++...++.+.|..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~----------------------------------------~l~~fk~~~~~~N~vrf~~ 80 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ----------------------------------------LLEEFKGPPATTNGVRFIS 80 (376)
T ss_pred eeEEEEecCCeEEEEeccchh----------------------------------------hhheecCCCCcccceEEec
Confidence 468888889999999987643 2367788888899999976
Q ss_pred C-CCceEEEEcCCCeEEEEEccCCCccceeeeccCC-CCeEEEEecCCCCcEEEEEcC----CCcEEEEeCCCCCCCCCC
Q 010997 289 S-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVG 362 (496)
Q Consensus 289 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~ 362 (496)
. ++..+.+|+.||+|++||+|............+. .+..|++.+- .++++++|+. +-.|.+||+|+..
T Consensus 81 ~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q----- 154 (376)
T KOG1188|consen 81 CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ----- 154 (376)
T ss_pred CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc-----
Confidence 4 6678999999999999999997754555555555 6788888876 6888888864 6789999999843
Q ss_pred CCceE-eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 363 SPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 363 ~~~~~-~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
+++.. +..|...|++|.|+|..+.+|+|||.||.|.|||+....++ ..+.....|...|..+.|...
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee------------DaL~~viN~~sSI~~igw~~~ 222 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE------------DALLHVINHGSSIHLIGWLSK 222 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch------------hhHHHhhcccceeeeeeeecC
Confidence 32444 46799999999999999999999999999999999875322 122233457778999999987
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
+-.-+...+. ..+..+|++.+.
T Consensus 223 ~ykrI~clTH-------~Etf~~~ele~~ 244 (376)
T KOG1188|consen 223 KYKRIMCLTH-------METFAIYELEDG 244 (376)
T ss_pred CcceEEEEEc-------cCceeEEEccCC
Confidence 6222333333 388999999853
No 181
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.3e-18 Score=147.99 Aligned_cols=202 Identities=12% Similarity=0.208 Sum_probs=151.1
Q ss_pred eeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (496)
Q Consensus 200 ~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (496)
.|+.|++.|.+||+|..||.|.|||+.+.. +-+.+.+|..
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------iar~lsaH~~ 66 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------IARMLSAHVR 66 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------hhhhhhcccc
Confidence 699999999999999999999999997532 2367889999
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 359 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~ 359 (496)
+|++++|+++| ..|+|++.|..|.+||+..+. +.+.+ ...++|....|+|.+.+.+++.-.+..-.+.++..+.
T Consensus 67 pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs--~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-- 140 (405)
T KOG1273|consen 67 PITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGS--PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-- 140 (405)
T ss_pred ceeEEEecCCC-CEeeeecCCceeEEEeccCCC--ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--
Confidence 99999999999 799999999999999999998 44444 5688999999999777776666666656666665411
Q ss_pred CCCCCceEec--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC-CCcceE
Q 010997 360 GVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDF 436 (496)
Q Consensus 360 ~~~~~~~~~~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~ 436 (496)
...+..-. .-...-.+..|.+.|.+++ +|..-|.+.++|..+. +++..+.--. ..|..+
T Consensus 141 --h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGtsKGkllv~~a~t~---------------e~vas~rits~~~IK~I 202 (405)
T KOG1273|consen 141 --HSVLPKDDDGDLNSSASHGVFDRRGKYII-TGTSKGKLLVYDAETL---------------ECVASFRITSVQAIKQI 202 (405)
T ss_pred --eeeccCCCccccccccccccccCCCCEEE-EecCcceEEEEecchh---------------eeeeeeeechheeeeEE
Confidence 01111000 0111223346889999765 9999999999999885 3333333323 578889
Q ss_pred EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997 437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 473 (496)
Q Consensus 437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~ 473 (496)
-++..+..+++ ...|..||.|++++....
T Consensus 203 ~~s~~g~~lii--------NtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 203 IVSRKGRFLII--------NTSDRVIRTYEISDIDDE 231 (405)
T ss_pred EEeccCcEEEE--------ecCCceEEEEehhhhccc
Confidence 99998988884 444699999999866543
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.9e-18 Score=159.47 Aligned_cols=223 Identities=19% Similarity=0.236 Sum_probs=158.7
Q ss_pred cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
..+..+.+|.++|.|+++.+ ++..+.+|+.||+|+.|++... ...............+.||++ .|+.+++++....
T Consensus 335 epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n--~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~ 410 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPN--QDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDR 410 (577)
T ss_pred eeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCC--CCcccccCcchhccceecccc-ceeeeeecccccc
Confidence 34678889999999999988 9999999999999999988733 222222333355568999999 7999999999999
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|++|+.||+|++|+...........+ ..| +--..+.+-...
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~f~~~--------------------------------------~e~-g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCTFGEP--------------------------------------KEH-GYPLSVDRTSSR 451 (577)
T ss_pred eeeecCCceEEeeccCCcCccccCCc--------------------------------------ccc-CCcceEeeccch
Confidence 99999999999999864322000000 001 112233332222
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 365 (496)
..+.++...-+.--++++.......+... ......++.+.++| ...+.+++..|+.|+++|..+ +.++
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~------~~~l 524 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT------GKIL 524 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc------cccc
Confidence 12222222333333444443331111111 11235678899999 889999999999999999999 8999
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
+....|...++++++.|+|.+ |++++.||.+++|.+..
T Consensus 525 ~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDV 562 (577)
T ss_pred hheeeccceecceeecCCCce-EEeecCCceeehhhccc
Confidence 999999999999999999997 56999999999999965
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=3.7e-18 Score=160.42 Aligned_cols=217 Identities=19% Similarity=0.318 Sum_probs=166.3
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEe
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG 214 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg 214 (496)
.+-....|+.+.|.|.+...||.+++||.|++|.+..+.... ....+...+.+|.. .|++|.|+|- ...|+++
T Consensus 623 ~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-----~~~tPe~~lt~h~e-KI~slRfHPLAadvLa~a 696 (1012)
T KOG1445|consen 623 GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-----NEMTPEKILTIHGE-KITSLRFHPLAADVLAVA 696 (1012)
T ss_pred ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-----ccCCcceeeecccc-eEEEEEecchhhhHhhhh
Confidence 344567899999999999999999999999999998763222 23467788999998 6999999996 5689999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.|-+|++||+.+... ...+.+|++.|.+++|+|+| ..+
T Consensus 697 syd~Ti~lWDl~~~~~----------------------------------------~~~l~gHtdqIf~~AWSpdG-r~~ 735 (1012)
T KOG1445|consen 697 SYDSTIELWDLANAKL----------------------------------------YSRLVGHTDQIFGIAWSPDG-RRI 735 (1012)
T ss_pred hccceeeeeehhhhhh----------------------------------------hheeccCcCceeEEEECCCC-cce
Confidence 9999999999986543 25688999999999999999 789
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC----CcEEEEeCCCCCCCCCCCCceEecc
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
++.+.||+|++|..+++..+...-...-...--.|.|.- ++.++++.+.| ..|.+||..+.. +.++.+..-
T Consensus 736 AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~----~~pl~t~~l 810 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLD----LRPLYTQVL 810 (1012)
T ss_pred eeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhcc----CCcceeeee
Confidence 999999999999999887554322212223345667766 78888877766 468899988765 455544321
Q ss_pred CCC-CEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 371 HSA-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 371 h~~-~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
... .+.--.+.+|...+|++|-.|..|.+|.+-.
T Consensus 811 Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 811 DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 111 1222235567777899999999999999865
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=6.6e-18 Score=155.88 Aligned_cols=229 Identities=17% Similarity=0.295 Sum_probs=156.1
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
.|...|.|+.|+. +..++.+++++-.+.-||+.+.......... ..-|. .-|..+ .+..=-.....|+.++.|
T Consensus 12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt---~~h~~~--rs~~~g~~~d~~~i~s~D 84 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPT---DMHLGG--RSSGGGKGSDTLLICSND 84 (737)
T ss_pred ccceeEEeecccc-cceEEEeccCceEEEeecccchhhhhhhCCc-ccCCc---cccccc--cccCCCCCcceEEEEcCC
Confidence 5666778999988 6666666665545555555544211110000 00000 011110 000001122368888899
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|.+.+.+-.... ......|.+.+.+-.|+|+| .-|+++
T Consensus 85 Gkf~il~k~~rV-----------------------------------------E~sv~AH~~A~~~gRW~~dG-tgLlt~ 122 (737)
T KOG1524|consen 85 GRFVILNKSARV-----------------------------------------ERSISAHAAAISSGRWSPDG-AGLLTA 122 (737)
T ss_pred ceEEEecccchh-----------------------------------------hhhhhhhhhhhhhcccCCCC-ceeeee
Confidence 999998754211 14567899999999999999 679999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
++||.|++|.- ++- ...+......+|.|++|.|.+...+.+.+ +.+.|=-+.. ...+...+.|.+-|.+
T Consensus 123 GEDG~iKiWSr-sGM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~------n~k~i~WkAHDGiiL~ 191 (737)
T KOG1524|consen 123 GEDGVIKIWSR-SGM--LRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAA------NSKIIRWRAHDGLVLS 191 (737)
T ss_pred cCCceEEEEec-cch--HHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccc------ccceeEEeccCcEEEE
Confidence 99999999974 333 33344456789999999995555555544 4455555555 4567788999999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~ 443 (496)
+.|++... ++++|++|...+|||-.. ..+|....|.-+|++++|+|+..
T Consensus 192 ~~W~~~s~-lI~sgGED~kfKvWD~~G----------------~~Lf~S~~~ey~ITSva~npd~~ 240 (737)
T KOG1524|consen 192 LSWSTQSN-IIASGGEDFRFKIWDAQG----------------ANLFTSAAEEYAITSVAFNPEKD 240 (737)
T ss_pred eecCcccc-ceeecCCceeEEeecccC----------------cccccCChhccceeeeeeccccc
Confidence 99999988 678999999999999765 45677788889999999999743
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=3.2e-18 Score=153.01 Aligned_cols=260 Identities=20% Similarity=0.313 Sum_probs=181.2
Q ss_pred EecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcC
Q 010997 191 LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269 (496)
Q Consensus 191 l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (496)
+.-|...+|+.+.|.++.. .|+||+.|..|++|-++....... ....+
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------------------------~~~V~ 56 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------------------------DMKVE 56 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------------------------ceeEE
Confidence 3445555799999998865 999999999999999875432100 02334
Q ss_pred CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEcc--------C------CCccceeeeccCCCCeEEEEecCCC
Q 010997 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--------V------GTSPVIKVEKAHDADLHCVDWNPLD 335 (496)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--------~------~~~~~~~~~~~~~~~v~~i~~sp~~ 335 (496)
....+..|...|+++.|+|+| .++++|+++|.|.+|-.. + ..........+|...|..++|+| +
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d 134 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-D 134 (434)
T ss_pred EeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-C
Confidence 456788999999999999999 799999999999999766 2 11223455678999999999999 9
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC----
Q 010997 336 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ---- 411 (496)
Q Consensus 336 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~---- 411 (496)
++++++|+.|..+++||++. +..+..+..|...|..++|.|.++++ ++-+.|...+++.+.........
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~------G~l~~~~~dh~~yvqgvawDpl~qyv-~s~s~dr~~~~~~~~~~~~~~~~~~~~ 207 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHA------GQLLAILDDHEHYVQGVAWDPLNQYV-ASKSSDRHPEGFSAKLKQVIKRHGLDI 207 (434)
T ss_pred CceeeeeeccceEEEEEecc------ceeEeeccccccccceeecchhhhhh-hhhccCcccceeeeeeeeeeeeeeeeE
Confidence 99999999999999999999 89999999999999999999999974 68888887777776543211110
Q ss_pred ----CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC--CCeEEEeecCCCCcCCchHHHHHHHhc
Q 010997 412 ----GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG--GGTLQIWRMSDLIYRPQDEVLAELEKF 485 (496)
Q Consensus 412 ----~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~--Dg~i~iw~~~~~~~~~~~~~~~~l~~h 485 (496)
...+.......++.-..-..-...++|+|+|..++. -+.-..+|+. =++.++|+-.+ -..+...+...
T Consensus 208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt-Pag~~~~g~~~~~n~tYvfsrk~-----l~rP~~~lp~~ 281 (434)
T KOG1009|consen 208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT-PAGLFKVGGGVFRNTSYVFSRKD-----LKRPAARLPSP 281 (434)
T ss_pred eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc-ccceeeeCCceeeceeEeecccc-----ccCceeecCCC
Confidence 001111111222221111224567899998876553 2210002221 13344554442 24566777788
Q ss_pred cceEEEeccCC
Q 010997 486 KAHVISCTSKP 496 (496)
Q Consensus 486 ~~~v~~~~~sP 496 (496)
..++..+.|+|
T Consensus 282 ~k~~lavr~~p 292 (434)
T KOG1009|consen 282 KKPALAVRFSP 292 (434)
T ss_pred CcceEEEEeee
Confidence 88888888887
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.2e-15 Score=145.50 Aligned_cols=266 Identities=9% Similarity=0.144 Sum_probs=166.9
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEE-eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATH-TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
+.++.+.+.+....++++| ++++|+++ ..++.|.+|++...... ....... ... ....++++|++++
T Consensus 26 ~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l---------~~~~~~~-~~~-~p~~i~~~~~g~~ 93 (330)
T PRK11028 26 TLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL---------TFAAESP-LPG-SPTHISTDHQGRF 93 (330)
T ss_pred eeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce---------EEeeeec-CCC-CceEEEECCCCCE
Confidence 3445566667788999999 77776554 45889999999732100 0111111 112 2468999999998
Q ss_pred eEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 211 VLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 211 l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
|++++ .++.|.+|++++..... ..+..+. +...+..++++|+
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~------------------------------------~~~~~~~-~~~~~~~~~~~p~ 136 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPV------------------------------------APIQIIE-GLEGCHSANIDPD 136 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCC------------------------------------Cceeecc-CCCcccEeEeCCC
Confidence 88776 48999999986321100 0011111 2234567889999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccc----eeeeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCC
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPV----IKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP 364 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~ 364 (496)
+..++++...++.|.+||+.+..... .............++|+| ++.+++++.. ++.|.+||+..... ....
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~--~~~~ 213 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHG--EIEC 213 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCC--CEEE
Confidence 95556777788999999997633110 000111234567899999 8888877765 89999999974210 0122
Q ss_pred ceEeccC------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997 365 INKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 365 ~~~~~~h------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
+..+..+ ......+.|+|++++++++...++.|.+|++...+... .++..... ......+++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----------~~~~~~~~-~~~p~~~~~ 281 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----------SFEGHQPT-ETQPRGFNI 281 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----------EEeEEEec-cccCCceEE
Confidence 3333221 12234689999999877665568899999997532111 11111111 124568999
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+|++++++++... +++|.+|++.
T Consensus 282 ~~dg~~l~va~~~-------~~~v~v~~~~ 304 (330)
T PRK11028 282 DHSGKYLIAAGQK-------SHHISVYEID 304 (330)
T ss_pred CCCCCEEEEEEcc-------CCcEEEEEEc
Confidence 9999999886544 4999999986
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1e-16 Score=159.10 Aligned_cols=285 Identities=18% Similarity=0.225 Sum_probs=181.1
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC--CCCcceeeeecCC--CCceEEec
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QDNAEFALAMCPT--EPYVLSGG 215 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h--~~~~v~~l~~~p~--~~~l~sg~ 215 (496)
.+.-..+.|+|..+ .++++...-.|+|||.+.+.... .+..+ ....|+.+.+-.. ..+|++|+
T Consensus 1064 ~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~------------~F~n~~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLN------------GFDNGAFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred CCCCceeeecCCCc-eeEEcCCcceEEEEecccCceec------------cccCCCCCCCccceeeeecccchhheeeec
Confidence 34566788888554 56666656699999999884322 11111 1124777777543 44899999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.||.|+||+--.... .....+ ..|.... ....+-.+.=.-+.|.... ..|+
T Consensus 1131 ~dGvIRIwk~y~~~~----~~~eLV--------------------Taw~~Ls----~~~~~~r~~~~v~dWqQ~~-G~Ll 1181 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKW----KKPELV--------------------TAWSSLS----DQLPGARGTGLVVDWQQQS-GHLL 1181 (1387)
T ss_pred cCceEEEeccccccc----CCceeE--------------------Eeecccc----ccCccCCCCCeeeehhhhC-CeEE
Confidence 999999997432110 000000 0000000 0000111111345777766 4566
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC-
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA- 374 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~- 374 (496)
++|+-..|+|||...... +.-...+....|+++.-+-..++++++|..||.|++||.|.... ...+...+.|+..
T Consensus 1182 ~tGd~r~IRIWDa~~E~~-~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAHKEQV-VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVE 1257 (1387)
T ss_pred ecCCeeEEEEEeccccee-EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---cccceeecccCCcc
Confidence 666689999999987662 22222345677888877665789999999999999999998542 2467778888887
Q ss_pred -EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 375 -VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 375 -i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
|..+.+-+.|-.-|++|+.||.|++||++....+. . ..+..+....+.++++..+++.+. +|
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---------~-~~iv~~~~yGs~lTal~VH~hapi-iA------ 1320 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---------F-LTIVAHWEYGSALTALTVHEHAPI-IA------ 1320 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccc---------c-ceeeeccccCccceeeeeccCCCe-ee------
Confidence 99999998775436799999999999999831110 0 111112222235899999997764 44
Q ss_pred CCCCCCCeEEEeecCCCCcCCchHHHHHHHh-------ccceEEEeccCC
Q 010997 454 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-------FKAHVISCTSKP 496 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~-------h~~~v~~~~~sP 496 (496)
||+. +.|+||++. |+.+..+.. ..+++.+++|||
T Consensus 1321 -sGs~-q~ikIy~~~-------G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1321 -SGSA-QLIKIYSLS-------GEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred -ecCc-ceEEEEecC-------hhhhcccccCcccccCcCCCcceeeecc
Confidence 5555 899999998 333333332 245689999998
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.9e-18 Score=155.18 Aligned_cols=234 Identities=17% Similarity=0.278 Sum_probs=167.3
Q ss_pred ceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 188 ~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
...|.||++ .|+||+|+.+|.+|+||+.|-.+.|||.-..+..
T Consensus 43 E~eL~GH~G-CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll------------------------------------ 85 (758)
T KOG1310|consen 43 EAELTGHTG-CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL------------------------------------ 85 (758)
T ss_pred hhhhccccc-eecceeecCCCCEEeecCCcceEEeecchhccee------------------------------------
Confidence 346899998 8999999999999999999999999998632211
Q ss_pred cCCeeeeecCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCC--------ccceeeeccCCCCeEEEEecCCCCcE
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGT--------SPVIKVEKAHDADLHCVDWNPLDDNL 338 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~i~~sp~~~~~ 338 (496)
..+-.+|...|.++.|-|.. ..++++|..|..|+++|+...+ .........|...|..|+-.|...+.
T Consensus 86 ---hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Pht 162 (758)
T KOG1310|consen 86 ---HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHT 162 (758)
T ss_pred ---eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCce
Confidence 12346899999999999854 3578999999999999998522 11234456789999999999955699
Q ss_pred EEEEcCCCcEEEEeCCCCCCCCC----CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC
Q 010997 339 ILTGSADNSVRMFDRRNLTSNGV----GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (496)
Q Consensus 339 l~sgs~dg~i~iwd~~~~~~~~~----~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~ 414 (496)
|.+++.||+|+-+|+|.+..-.. ...+..+...--...++..+|..++.||.|+.|-..++||.+...+.......
T Consensus 163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~ 242 (758)
T KOG1310|consen 163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT 242 (758)
T ss_pred EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence 99999999999999998542111 11111122222356799999999999999999999999996653332222111
Q ss_pred CCCCCC----eeEEEecCCC-----------CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 415 TTNYPA----GLFFQHAGHR-----------DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 415 ~~~~~~----~~~~~~~~h~-----------~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
-...|+ ..-+-..+|. ..++-+.|+|+|.-++++-+.+ .|+++++.+
T Consensus 243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE--------hVYlfdvn~ 304 (758)
T KOG1310|consen 243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE--------HVYLFDVNE 304 (758)
T ss_pred ccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe--------EEEEEeecC
Confidence 111111 0111122232 1256688999999999987765 799999974
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.1e-17 Score=145.17 Aligned_cols=176 Identities=18% Similarity=0.261 Sum_probs=138.5
Q ss_pred eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997 189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
..+.+|.+ .|.+|.|+.++++|++|+.|..+++|+++..... ...
T Consensus 50 KD~~~H~G-CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------------------------------k~~ 94 (609)
T KOG4227|consen 50 KDVREHTG-CINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------------------------------KTP 94 (609)
T ss_pred hhhhhhcc-ccceeeeccCCeEEeecCCcceeeeechHHHHhh----------------------------------cCC
Confidence 45778998 7999999999999999999999999999754322 122
Q ss_pred CCeeeee-cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCC---CCeEEEEecCCCCcEEEEEcC
Q 010997 269 GPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 269 ~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~i~~sp~~~~~l~sgs~ 344 (496)
+|+.... .|...|.|++|...+ .++++|+.+++|.+.|+.+.+ .+..+ .|. +.|+.+..+| ..+.|++.+.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~q--si~V~-~~~~~~~~VY~m~~~P-~DN~~~~~t~ 169 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQ--SIYVA-NENNNRGDVYHMDQHP-TDNTLIVVTR 169 (609)
T ss_pred CCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccce--eeeee-cccCcccceeecccCC-CCceEEEEec
Confidence 3344433 456899999998877 789999999999999999987 34443 444 5999999999 6899999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~ 407 (496)
+|.|.+||.+..... +.+ ...........++.|+|..+.||++++.-+-+.+||.+....
T Consensus 170 ~~~V~~~D~Rd~~~~--~~~-~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 170 AKLVSFIDNRDRQNP--ISL-VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred CceEEEEeccCCCCC--Cce-eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence 999999999973210 111 122234556789999999999999999999999999987543
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=1.2e-15 Score=150.56 Aligned_cols=250 Identities=27% Similarity=0.527 Sum_probs=186.5
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP- 209 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~- 209 (496)
.......|...|..++|+| ++.++++++. |+.+++|++... .....+.+|.. .|.+++|+|++.
T Consensus 147 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTG------------KPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCC------------ceEEeeccCCC-ceEEEEEcCCcce
Confidence 4456778999999999999 6668888875 999999999875 55667777887 689999999998
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCee-eeecCCCceeEEEEcc
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG-IYNGHEDTVEDVTFCP 288 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~ 288 (496)
.+++++.|+.|++||...+.. .. .+.+|...+ ...|+|
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~----------------------------------------~~~~~~~~~~~~-~~~~~~ 251 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKL----------------------------------------LRSTLSGHSDSV-VSSFSP 251 (466)
T ss_pred EEEEecCCCcEEEEECCCCcE----------------------------------------EeeecCCCCcce-eEeECC
Confidence 566669999999997663221 12 456676664 338999
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
++ .++++++.|+.+++||++.... .......|...+.++.|+| ++..+++++.|+.+.+||+.. .......
T Consensus 252 ~~-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~------~~~~~~~ 322 (466)
T COG2319 252 DG-SLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLET------GKLLSSL 322 (466)
T ss_pred CC-CEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCC------CceEEEe
Confidence 98 7888999999999999997764 1233357899999999999 788888899999999999887 4444444
Q ss_pred c--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 369 E--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 369 ~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
. .|...+..+.|.+++..++.++..|+.+.+|++.... ......... .+..+.+.+ . ..+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~-~-~~~ 384 (466)
T COG2319 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---------------PLKTLEGHS-NVLSVSFSP-D-GRV 384 (466)
T ss_pred eecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---------------eeEEecCCc-eEEEEEECC-C-CCE
Confidence 4 7888899999943324454444678999999998841 111222222 288999999 6 545
Q ss_pred EEecCCCCCCCCCCeEEEeecCC
Q 010997 447 VSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.+ .++.++.+.+|+...
T Consensus 385 ~~------~~~~~~~~~~~~~~~ 401 (466)
T COG2319 385 VS------SGSTDGTVRLWDLST 401 (466)
T ss_pred EE------EecCCCceEEEeccc
Confidence 43 134459999999984
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=3.3e-17 Score=161.00 Aligned_cols=237 Identities=14% Similarity=0.139 Sum_probs=154.1
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC---CcEEEEecCCccccccCCccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPAT 238 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D---g~i~iwd~~~~~~~~~~~~~~ 238 (496)
+..|.+||.... . ...+..|.. .+...+|+|+|++|+.++.+ ..|.+||+.++....
T Consensus 183 ~~~i~i~d~dg~------------~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------ 242 (429)
T PRK01742 183 PYEVRVADYDGF------------N-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------ 242 (429)
T ss_pred eEEEEEECCCCC------------C-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------
Confidence 468999998765 2 234556655 58899999999999887643 469999987543210
Q ss_pred cccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEE--EccCCCccce
Q 010997 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW--DARVGTSPVI 316 (496)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~ 316 (496)
+..+.+ ....++|+|++..++++.+.+|.+.|| |+.++. .
T Consensus 243 --------------------------------l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~ 284 (429)
T PRK01742 243 --------------------------------VASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---P 284 (429)
T ss_pred --------------------------------EecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---e
Confidence 111222 234679999994444445578876666 554444 3
Q ss_pred eeeccCCCCeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997 317 KVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (496)
Q Consensus 317 ~~~~~~~~~v~~i~~sp~~~~~l~s-gs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg 395 (496)
..+..+...+...+|+| ++..|+. +..+|...||++.... .....+ .+.. ....|+|+|..|+ .++.++
T Consensus 285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~-----~~~~~l-~~~~--~~~~~SpDG~~ia-~~~~~~ 354 (429)
T PRK01742 285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASG-----GGASLV-GGRG--YSAQISADGKTLV-MINGDN 354 (429)
T ss_pred EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCC-----CCeEEe-cCCC--CCccCCCCCCEEE-EEcCCC
Confidence 34445667788999999 7876665 4467889999876522 222223 3333 4678999999754 555454
Q ss_pred cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCc
Q 010997 396 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 475 (496)
Q Consensus 396 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~ 475 (496)
+.+||+..... ..+. ..+ ....++|+|++..++.+.. ++.+.+|.+... .
T Consensus 355 -i~~~Dl~~g~~-------------~~lt--~~~--~~~~~~~sPdG~~i~~~s~--------~g~~~~l~~~~~----~ 404 (429)
T PRK01742 355 -VVKQDLTSGST-------------EVLS--STF--LDESPSISPNGIMIIYSST--------QGLGKVLQLVSA----D 404 (429)
T ss_pred -EEEEECCCCCe-------------EEec--CCC--CCCCceECCCCCEEEEEEc--------CCCceEEEEEEC----C
Confidence 66699877411 1111 111 2356789999887664432 366777776421 4
Q ss_pred hHHHHHHHhccceEEEeccCC
Q 010997 476 DEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 476 ~~~~~~l~~h~~~v~~~~~sP 496 (496)
+..++++.+|.+.+...+|||
T Consensus 405 G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 405 GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCceEEccCCCCCCCCcccCC
Confidence 677888888999899999998
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=3.3e-17 Score=155.03 Aligned_cols=241 Identities=13% Similarity=0.194 Sum_probs=180.6
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~s 213 (496)
.+.+|.+.|+|++|+. +|+.+|+|+.|..|.||+-.-. ..++ .|.+ .|.|+.|+|-...|+|
T Consensus 48 tLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE---------------G~LkYSH~D-~IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE---------------GILKYSHND-AIQCMSFNPITHQLAS 110 (1081)
T ss_pred ccccccceEEEEEEcc-CCceeccCCCceeEEEeccccc---------------ceeeeccCC-eeeEeecCchHHHhhh
Confidence 4568999999999999 9999999999999999986433 2333 4666 7999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+-. ..-+|..+..... . ......|.+.+|..+| .+
T Consensus 111 CsLs-dFglWS~~qK~V~-----------------------------------------K-~kss~R~~~CsWtnDG-qy 146 (1081)
T KOG1538|consen 111 CSLS-DFGLWSPEQKSVS-----------------------------------------K-HKSSSRIICCSWTNDG-QY 146 (1081)
T ss_pred cchh-hccccChhhhhHH-----------------------------------------h-hhhheeEEEeeecCCC-cE
Confidence 9853 5678877642211 0 0123578899999999 89
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC----cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~----~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
|+.|-.+|+|.|-+-.......+....+.+++|.+|+|+|..+ ..+++.....++.++.+. ++.+..-+
T Consensus 147 lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~r 219 (1081)
T KOG1538|consen 147 LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKDR 219 (1081)
T ss_pred EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeecccc
Confidence 9999999999998654444333333345788999999999432 467777777777777766 34444333
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
.-.-...|+++.|+|.++| .|+.|+.+++|.-.. ..+.+.......|+.++..|++.++.
T Consensus 220 ~L~FdP~CisYf~NGEy~L-iGGsdk~L~~fTR~G----------------vrLGTvg~~D~WIWtV~~~PNsQ~v~--- 279 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNGEYIL-LGGSDKQLSLFTRDG----------------VRLGTVGEQDSWIWTVQAKPNSQYVV--- 279 (1081)
T ss_pred cCCCCchhheeccCCcEEE-EccCCCceEEEeecC----------------eEEeeccccceeEEEEEEccCCceEE---
Confidence 3344567999999999876 777899999997554 34555556677999999999998877
Q ss_pred cCCCCCCCCCCeEEEeecC
Q 010997 450 SDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~ 468 (496)
.|..||+|-.|++.
T Consensus 280 -----~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 280 -----VGCQDGTIACYNLI 293 (1081)
T ss_pred -----EEEccCeeehhhhH
Confidence 45567999999985
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=9.1e-17 Score=159.45 Aligned_cols=258 Identities=12% Similarity=0.206 Sum_probs=172.6
Q ss_pred CCceeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCC-CccccCCCCCCCCceE---EecC----CCCcceeeeecCCCCc
Q 010997 140 PGEVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQP-NRHAVLGATNSRPDLI---LTGH----QDNAEFALAMCPTEPY 210 (496)
Q Consensus 140 ~~~V~~l~~~p-~~~~~lat~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~---l~~h----~~~~v~~l~~~p~~~~ 210 (496)
...|+.+.+.. ++..++.+|+.||.|+||+--... .+. +.+.. +.++ .+ .-.-++|.....+
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~--------eLVTaw~~Ls~~~~~~r~-~~~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP--------ELVTAWSSLSDQLPGARG-TGLVVDWQQQSGH 1179 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCc--------eeEEeeccccccCccCCC-CCeeeehhhhCCe
Confidence 34688888765 466789999999999999754332 111 11111 1111 11 1235678877677
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|+++|.-..|+|||........... .+....|+++.-+..+
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~~~diP---------------------------------------~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIP---------------------------------------YGSSTLVTALSADLVH 1220 (1387)
T ss_pred EEecCCeeEEEEEecccceeEeecc---------------------------------------cCCCccceeecccccC
Confidence 7777778999999998654322111 1233456666665555
Q ss_pred CceEEEEcCCCeEEEEEccCCCc-cceeeeccCCCC--eEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 291 AQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDAD--LHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~--v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
++++++|..||.|++||.|.... ..+...+.|... |..+.+.+ .|. .|++|+.||.|++||+|... .....
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~~----~e~~~ 1295 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRMSS----KETFL 1295 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec-CCCcceeeeccCCeEEEEecccCc----ccccc
Confidence 58999999999999999997652 134556788877 99999998 444 59999999999999999842 12233
Q ss_pred EeccCC--C-CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997 367 KFEGHS--A-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 367 ~~~~h~--~-~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~ 443 (496)
++..|- + ..+++..+++.+ ++|+|+. +.|+||++... .+..... -+..+ ....+.+.+++|+|...
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~--~l~~~k~----n~~F~---~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGE--QLNIIKY----NPGFM---GQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred eeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChh--hhccccc----Ccccc---cCcCCCcceeeecchhH
Confidence 333333 3 599999999988 7889987 99999999752 1111000 00111 11234679999999654
Q ss_pred cEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 444 WTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 444 ~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
++| .|..|++|.||...+
T Consensus 1365 -llA-------aG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1365 -LLA-------AGSADSTVSIYSCEK 1382 (1387)
T ss_pred -hhh-------hccCCceEEEeecCC
Confidence 444 455579999998874
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=3.2e-16 Score=136.27 Aligned_cols=215 Identities=14% Similarity=0.222 Sum_probs=173.4
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
..+|+|.+|++ +...+|.+.....|.||...... ..++..++..|.. .|++++|+|..+.|++|+.|..
T Consensus 10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~---------~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGAD---------LWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred cCceeeeeecC-CCceEEeccCCceEEEEEecCCC---------CceeceehhhhCc-ceeEEeecCCCCceeEccCCCC
Confidence 46799999999 88899999999999999987761 2567789999988 7999999999999999999999
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
-.+|....+ ...++...+..+...++++.|+|.. +.|++|+.
T Consensus 79 ayVw~~~~~-------------------------------------~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSg 120 (361)
T KOG1523|consen 79 AYVWTQPSG-------------------------------------GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSG 120 (361)
T ss_pred ccccccCCC-------------------------------------CeeccceeEEEeccceeeEeecCcC-ceEEeccC
Confidence 999987421 3445567788899999999999998 89999999
Q ss_pred CCeEEEEEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC-----CC-CC------CCCCCCc
Q 010997 300 DSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR-----NL-TS------NGVGSPI 365 (496)
Q Consensus 300 dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~-----~~-~~------~~~~~~~ 365 (496)
...|.||-++.... ....+.+.+.+.|++++|+| ++-+|++|+.|+..++|..- .. .. .+-+..+
T Consensus 121 ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 121 ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred ccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 99999998876541 11233457788999999999 89999999999999998632 11 00 0113344
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.++....+.|..+.|+|+|.. ||=.+.|..+.+-|....
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~~-lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGNR-LAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred HhhccCCCceeeeEeCCCCCE-eeEecCCCceEEeecCCC
Confidence 555556788999999999995 678888999999998764
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=3.5e-16 Score=157.74 Aligned_cols=281 Identities=15% Similarity=0.195 Sum_probs=179.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
-++..|.+.|+.++.++.++.+++||+.||+|++||........ ...+...++.- .+..+.++...+.+..+|.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSP-EGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEec-cCCceEEEEeccCCCeEEE
Confidence 34557999999999999787999999999999999998753221 11122333332 3346889999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeE-EEEccCCC
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVED-VTFCPSSA 291 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~-l~~~~~~~ 291 (496)
++.||.|++.+++........ ....+....+ .+.+.+ -+|.....
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~---------------------------------~~~~ri~n~~~~g~vv~m~a~~~~~~ 1162 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRV---------------------------------ATQVRIPNLKKDGVVVSMHAFTAIVQ 1162 (1431)
T ss_pred EcCCCeEEEEEccccccccce---------------------------------eeeeecccccCCCceEEeeccccccc
Confidence 999999999999753110000 0000111111 122222 23332222
Q ss_pred -ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997 292 -QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 369 (496)
Q Consensus 292 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~- 369 (496)
..++.+..-+.|..||+++....-........+.|++++.+| .++++++|+..|.+.+||+|- +.++..+.
T Consensus 1163 S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF------~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1163 SHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF------RVPILSWEH 1235 (1431)
T ss_pred ceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec------CceeecccC
Confidence 378888899999999999876322222334567899999999 899999999999999999997 66776664
Q ss_pred cCCCCEEEEEEcCCCC---CEEEEEe-CCCcEEEEECCCCCcccCCCCCCC------CCCCeeEEEecCCCCCcceEEec
Q 010997 370 GHSAAVLCVQWSPDKS---SVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTT------NYPAGLFFQHAGHRDKVVDFHWN 439 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~---~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~V~~~~~~ 439 (496)
++..+|..+..+|-.+ ..+++++ ..+.|.+|++.++........... ..|.. .....+.-....+++.
T Consensus 1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~--~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN--DARKPDSLAGISCGVC 1313 (1431)
T ss_pred cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc--cCCCCCcccceeeecc
Confidence 3557888888887544 3343444 478899999998533221111100 00110 0000122223333444
Q ss_pred CCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 440 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 440 p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
.-++.++ +||.|..|+.||....
T Consensus 1314 ~~~~~~l--------tggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1314 EKNGFLL--------TGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cCCceee--------ecCCccceeeccCCCc
Confidence 3344555 7888899999998743
No 196
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.74 E-value=4.7e-19 Score=125.27 Aligned_cols=69 Identities=38% Similarity=0.672 Sum_probs=53.2
Q ss_pred hhhhhccccCChhHhHhhhhCcCCCCcceEeccCCccc-CC--CcceEEEEEEeecCCCCCCeEEEEEEecc
Q 010997 41 DDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQ-AT--YKNRQRLYLSEQTDGSVPNTLVIANCEVV 109 (496)
Q Consensus 41 ~~~~~~w~~~~~~ly~~~~~~~~~wps~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 109 (496)
+|+|++||+|+|++|++++.+.++||||||||+|+... .. +..++++++||||+++.+|+|+|++++++
T Consensus 1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p 72 (74)
T PF12265_consen 1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP 72 (74)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence 58999999999999999999999999999999998763 32 36789999999999999999999998874
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=146.78 Aligned_cols=201 Identities=16% Similarity=0.297 Sum_probs=154.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~ 232 (496)
.+.|+.++.||.+.|-+-.. +.......|.+ ++.+-.|+|+|.-|+|++.||.|++|.-.....
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-------------rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR-- 138 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-------------RVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR-- 138 (737)
T ss_pred cceEEEEcCCceEEEecccc-------------hhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccchHH--
Confidence 35688889999998877543 33346678887 789999999999999999999999998643211
Q ss_pred cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (496)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (496)
.++.....+|.|++|.|+....+++.+ +.+.|=-+....
T Consensus 139 ---------------------------------------Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~ 177 (737)
T KOG1524|consen 139 ---------------------------------------STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS 177 (737)
T ss_pred ---------------------------------------HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc
Confidence 233345678999999999976666654 456665555544
Q ss_pred ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997 313 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 313 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~ 392 (496)
.+...++|.+-|.++.|+| ..+++++|+.|-..++||-. +.++..-..|..+|++++|.|+. +++.++
T Consensus 178 --k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~ITSva~npd~--~~~v~S 245 (737)
T KOG1524|consen 178 --KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEYAITSVAFNPEK--DYLLWS 245 (737)
T ss_pred --ceeEEeccCcEEEEeecCc-cccceeecCCceeEEeeccc-------CcccccCChhccceeeeeecccc--ceeeee
Confidence 3445679999999999999 89999999999999999987 58888888999999999999993 566776
Q ss_pred CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
. .+.+ +.+ ...+.|..++|++||..+.+.+
T Consensus 246 ~-nt~R---~~~-----------------------p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 246 Y-NTAR---FSS-----------------------PRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred e-eeee---ecC-----------------------CCccceEEEEEcCCCceeeccc
Confidence 3 3444 222 2246799999999998866433
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=148.67 Aligned_cols=266 Identities=17% Similarity=0.244 Sum_probs=180.9
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
..|.-.++|.+++| +++++|+|..||.|.+|.--... ........+.-|.+ .|.+++|+++|.+|+||+.
T Consensus 202 ~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~--------~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 202 VHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSS--------DDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred hhhcccceeEEecc-ccceEEEeccCCcEEEEeccccc--------cccccceEEEeccc-ccceeEEecCCceEeeccc
Confidence 45777899999999 99999999999999999754411 01133456778888 6999999999999999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
.|.+.+|.+.++.. +-+..-.++|..+.++|++ .+.+.
T Consensus 272 E~VLv~Wq~~T~~k-----------------------------------------qfLPRLgs~I~~i~vS~ds-~~~sl 309 (792)
T KOG1963|consen 272 EGVLVLWQLETGKK-----------------------------------------QFLPRLGSPILHIVVSPDS-DLYSL 309 (792)
T ss_pred ceEEEEEeecCCCc-----------------------------------------ccccccCCeeEEEEEcCCC-CeEEE
Confidence 99999999987642 2233456789999999999 67888
Q ss_pred EcCCCeEEEEEccCCCcc-ceee--------eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC--------
Q 010997 297 VGDDSCLILWDARVGTSP-VIKV--------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN-------- 359 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~-~~~~--------~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~-------- 359 (496)
...|..|.+..+.+.... .+.. .....+-.+.++++| ..+.++-.+..|.|.+||+.+.+..
T Consensus 310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~ 388 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE 388 (792)
T ss_pred EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence 888999999877543210 0000 111234456778888 6677777778888888887652210
Q ss_pred ----CC---------------C------------------CCce-----------------EeccCCCCEEEEEEcCCCC
Q 010997 360 ----GV---------------G------------------SPIN-----------------KFEGHSAAVLCVQWSPDKS 385 (496)
Q Consensus 360 ----~~---------------~------------------~~~~-----------------~~~~h~~~i~~l~~sp~~~ 385 (496)
+. + .... ....|...+...+|.+..+
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 00 0 0000 0114555555555554333
Q ss_pred C-EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEE
Q 010997 386 S-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 464 (496)
Q Consensus 386 ~-llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~i 464 (496)
. .+++++.||.++||-+......... .....+.....-|..++++++|+.+|..+.+ |.|++|.|
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~-----~s~W~c~~i~sy~k~~i~a~~fs~dGslla~---------s~~~~Iti 534 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKK-----SSNWTCKAIGSYHKTPITALCFSQDGSLLAV---------SFDDTITI 534 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcC-----ccceEEeeeeccccCcccchhhcCCCcEEEE---------ecCCEEEE
Confidence 2 5679999999999999653221111 1222344444458889999999998864333 23489999
Q ss_pred eecCC
Q 010997 465 WRMSD 469 (496)
Q Consensus 465 w~~~~ 469 (496)
||...
T Consensus 535 wd~~~ 539 (792)
T KOG1963|consen 535 WDYDT 539 (792)
T ss_pred ecCCC
Confidence 99985
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=2.8e-16 Score=136.62 Aligned_cols=220 Identities=15% Similarity=0.230 Sum_probs=166.1
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
+|+|.+|++|...+|.+-....|.|+...... ..++.+++..|
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------------------~w~~~htls~H 54 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------------------LWEPAHTLSEH 54 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------------------Cceeceehhhh
Confidence 79999999999999999999999999876432 24455888999
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccC-CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
...|+.|+|+|.. +.|++|+.|..-++|.... ++......+..++...++|.|+| .++.||+|+....|.+|-+...
T Consensus 55 d~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 55 DKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred CcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecc
Confidence 9999999999998 7899999999999999844 33333445567899999999999 9999999999999999987762
Q ss_pred CCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC----CCCCC-eeEEEecCCCC
Q 010997 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----TNYPA-GLFFQHAGHRD 431 (496)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~h~~ 431 (496)
.. -....+.-+.+.+.|+++.|+|++- +||+|+.|+..+||..--. .....+.. ...|. +++.......+
T Consensus 133 Nd--WWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK--~Vdekpap~pWgsk~PFG~lm~E~~~~gg 207 (361)
T KOG1523|consen 133 ND--WWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIK--GVDEKPAPTPWGSKMPFGQLMSEASSSGG 207 (361)
T ss_pred cc--eehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeee--ccccCCCCCCCccCCcHHHHHHhhccCCC
Confidence 21 0111223345778899999999987 7899999999999986432 11111111 11222 23444445677
Q ss_pred CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.|..+.|+|+|..| +-++. |.++.+=|...
T Consensus 208 wvh~v~fs~sG~~l-awv~H-------ds~v~~~da~~ 237 (361)
T KOG1523|consen 208 WVHGVLFSPSGNRL-AWVGH-------DSTVSFVDAAG 237 (361)
T ss_pred ceeeeEeCCCCCEe-eEecC-------CCceEEeecCC
Confidence 89999999988765 44444 48999988874
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.7e-15 Score=148.96 Aligned_cols=222 Identities=12% Similarity=0.101 Sum_probs=148.3
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
+..|.+.|...+|+| +++.||..+.+ ..|++||+.++.. +.+..+.+| ...++|+|+|++|+
T Consensus 199 lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~----------~~l~~~~g~----~~~~~wSPDG~~La 263 (429)
T PRK01742 199 VNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGAR----------KVVASFRGH----NGAPAFSPDGSRLA 263 (429)
T ss_pred eccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCce----------EEEecCCCc----cCceeECCCCCEEE
Confidence 456788899999999 77778776643 3799999987621 112223333 24689999999888
Q ss_pred Ee-cCCCcEEEEecC--CccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 213 SG-GKDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 213 sg-~~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
.+ +.+|.+.||.++ ++. ...+..+...+....|+|+
T Consensus 264 ~~~~~~g~~~Iy~~d~~~~~-----------------------------------------~~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 264 FASSKDGVLNIYVMGANGGT-----------------------------------------PSQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred EEEecCCcEEEEEEECCCCC-----------------------------------------eEeeccCCCCcCCEEECCC
Confidence 76 468887777543 211 1334456667788999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
+..+++++..+|...||++....... ... .+.. .+.+|+| ++.+|+.++.++ +.+||+.+ +... .+.
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~------g~~~-~lt 369 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTS------GSTE-VLS 369 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCC------CCeE-Eec
Confidence 95555566678889999876543212 222 3333 4678999 899988887765 55699887 3332 222
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
.. .....+.|+|+|+. |+.++.++.+.+|++.... ......+.+|.+.+...+|+|-
T Consensus 370 ~~-~~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~-------------G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 370 ST-FLDESPSISPNGIM-IIYSSTQGLGKVLQLVSAD-------------GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-------------CCceEEccCCCCCCCCcccCCC
Confidence 11 12356889999996 4577778888888764310 1234556678888999999984
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.8e-14 Score=119.59 Aligned_cols=207 Identities=15% Similarity=0.210 Sum_probs=146.6
Q ss_pred cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceE--EecCC----CCcceeeee
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQ----DNAEFALAM 204 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--l~~h~----~~~v~~l~~ 204 (496)
.+++...+|.++|+.++|.. .+|.+|+. |.|+=|........... ++... ...|. -..|+++-.
T Consensus 53 ~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~------K~lwe~~~P~~~~~~evPeINam~l 122 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLAT------KRLWEVKIPMQVDAVEVPEINAMWL 122 (325)
T ss_pred cceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccc------hhhhhhcCccccCcccCCccceeEe
Confidence 34556689999999999963 56777765 99999987665321110 11111 11111 125899999
Q ss_pred cCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEE
Q 010997 205 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (496)
Q Consensus 205 ~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (496)
.|..+-++.++.|+.+.-||+++++. ...+.+|++-|.++
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i----------------------------------------~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRI----------------------------------------QREYRGHTDYVHSV 162 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEE----------------------------------------EEEEcCCcceeeee
Confidence 99888777777899999999987654 37899999999999
Q ss_pred EEccCCCceEEEEcCCCeEEEEEccCCCccceeee---------ccC-CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---------KAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~-~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~ 354 (496)
.--... ..+++|++||++++||.++.+. ...+ ..| ...|.+++- +...|++|+ ...+.+|.++
T Consensus 163 v~R~~~-~qilsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslwhLr 235 (325)
T KOG0649|consen 163 VGRNAN-GQILSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLR 235 (325)
T ss_pred eecccC-cceeecCCCccEEEEeccccce--eEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEEecc
Confidence 884444 4699999999999999999872 2222 122 345677776 456777765 4579999999
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
+ .++...|. -...+..+.|..+ .+++++..+.|.-|.+..
T Consensus 236 s------se~t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 236 S------SESTCVFP-IPARVHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred C------CCceEEEe-cccceeEeeeecc---eEEEeccccceeeeeecc
Confidence 9 44555443 3556788888765 345788888999999876
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=2.2e-15 Score=139.58 Aligned_cols=140 Identities=22% Similarity=0.428 Sum_probs=114.5
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC---cc-----------------------ceeeeccCCCCeEEEEe
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT---SP-----------------------VIKVEKAHDADLHCVDW 331 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~-----------------------~~~~~~~~~~~v~~i~~ 331 (496)
+..|+++.|-|.++..|+.+-.+|.+.+||..-.. .+ .+.........|+.++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 36899999999888899999999999999864211 00 01111123458899999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411 (496)
Q Consensus 332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~ 411 (496)
+| ++.+||+.+.||.+||||..+ ...+..++..-+...||+|||||++ +++|++|..|.||.+...
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt------~eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGEDDLVtVwSf~er------ 364 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDT------QELLGVMKSYFGGLLCVCWSPDGKY-IVTGGEDDLVTVWSFEER------ 364 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccH------HHHHHHHHhhccceEEEEEcCCccE-EEecCCcceEEEEEeccc------
Confidence 99 999999999999999999998 4566666666788999999999997 579999999999999874
Q ss_pred CCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
.++..-.||.+.|+.|+|.|
T Consensus 365 ---------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 365 ---------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---------eEEEeccccccceeeEeecc
Confidence 67777889999999999985
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.6e-16 Score=139.78 Aligned_cols=202 Identities=16% Similarity=0.260 Sum_probs=146.3
Q ss_pred eeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (496)
Q Consensus 200 ~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (496)
.+++|+++|..|++|+.||++|+|+..+.. .+.....|..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~----------------------------------------t~l~e~~~~~ 187 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML----------------------------------------TILEEIAHHA 187 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch----------------------------------------hhhhhHhhcC
Confidence 578999999999999999999999965332 2244557889
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC-----cEEEEEcCCCcEEEEeCC
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-----NLILTGSADNSVRMFDRR 354 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-----~~l~sgs~dg~i~iwd~~ 354 (496)
.|.++.|+|++ .+|++.+.| ..+||+.+++..............+..+.|+. ++ .+++....-+.|+.||+.
T Consensus 188 eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~ 264 (398)
T KOG0771|consen 188 EVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDIS 264 (398)
T ss_pred ccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEee
Confidence 99999999999 799999999 99999999985222222123344556677776 44 233334445678887776
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 434 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 434 (496)
...... .-+..+.......|++++.+++|+ ++|.|+.||.|.|++..+.. .+.+....|...|+
T Consensus 265 ~w~~~~-~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq--------------~~~~vk~aH~~~VT 328 (398)
T KOG0771|consen 265 LWSGSN-FLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQ--------------RLQYVKEAHLGFVT 328 (398)
T ss_pred eecccc-ccchhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceee--------------eeEeehhhheeeee
Confidence 533211 112223333345799999999999 57899999999999998751 34445677999999
Q ss_pred eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.+.|+|+.+++. +.+.|....|..+.
T Consensus 329 ~ltF~Pdsr~~~--------svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 329 GLTFSPDSRYLA--------SVSSDNEAAVTKLA 354 (398)
T ss_pred eEEEcCCcCccc--------ccccCCceeEEEEe
Confidence 999999887765 44445888888776
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=5.4e-16 Score=131.28 Aligned_cols=241 Identities=16% Similarity=0.208 Sum_probs=162.6
Q ss_pred CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (496)
.|...+++|.. .|+++.|..++ +|++|..-|.|.+|++++....
T Consensus 5 dP~fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~---------------------------------- 48 (323)
T KOG0322|consen 5 DPFFVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDL---------------------------------- 48 (323)
T ss_pred CCeeEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccc----------------------------------
Confidence 67788999988 69999998766 4999999999999999865322
Q ss_pred CCcCCeeeee-cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc-----------------------cc------
Q 010997 266 PSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----------------------PV------ 315 (496)
Q Consensus 266 ~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~------ 315 (496)
..+. .|...|+.+.--|++ .+.+-+.|+.+.+|++.-... +.
T Consensus 49 ------~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 49 ------PLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ------hhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence 2222 345566666666654 366666777777776653110 00
Q ss_pred ------------------eee----eccCCCCeEEEEecCCC--CcEEEEEcCCCcEEEEeCCCCCCC----CCCCCceE
Q 010997 316 ------------------IKV----EKAHDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSN----GVGSPINK 367 (496)
Q Consensus 316 ------------------~~~----~~~~~~~v~~i~~sp~~--~~~l~sgs~dg~i~iwd~~~~~~~----~~~~~~~~ 367 (496)
+.. ..+..+.+.|..+.-.. .-++++|..+|.+.+||+...... ...+....
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 000 01123456666643322 346778889999999999982110 01133444
Q ss_pred eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
...|..+|.++.+.+.-..= ++|+.+..+..|.+........ .+.+. .--...|..+..-||++. +|
T Consensus 201 ~ash~qpvlsldyas~~~rG-isgga~dkl~~~Sl~~s~gslq-------~~~e~----~lknpGv~gvrIRpD~KI-lA 267 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDRG-ISGGADDKLVMYSLNHSTGSLQ-------IRKEI----TLKNPGVSGVRIRPDGKI-LA 267 (323)
T ss_pred hhhccCcceeeeechhhcCC-cCCCccccceeeeeccccCccc-------ccceE----EecCCCccceEEccCCcE-Ee
Confidence 56799999999998754432 4788888899999976311110 11111 112345888999997764 44
Q ss_pred EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|+|+|+.||||..+ +..+++.|+-|++.|++|||||
T Consensus 268 -------TAGWD~RiRVyswr------tl~pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 268 -------TAGWDHRIRVYSWR------TLNPLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred -------ecccCCcEEEEEec------cCCchhhhhhhhcceeEEEeCC
Confidence 88899999999999 7899999999999999999998
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.3e-16 Score=139.94 Aligned_cols=201 Identities=16% Similarity=0.212 Sum_probs=145.0
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEE
Q 010997 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 223 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iw 223 (496)
.+++|+. ++..||+|+.||.+|||+.... ........|.. .|.+|.|+|||++|++-+.| ..+||
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~------------~t~l~e~~~~~-eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSM------------LTILEEIAHHA-EVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcc------------hhhhhhHhhcC-ccccceeCCCCcEEEEecCC-ceEEE
Confidence 7888998 8889999999999999998776 44556667776 69999999999999999999 99999
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC--Cc-e-EEEEcC
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS--AQ-E-FCSVGD 299 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~-~-l~s~~~ 299 (496)
+.+++.......+ .........+.|+.++ +. + ++.-..
T Consensus 213 ~~~~g~~~a~~t~--------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 213 SVNTGAALARKTP--------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFP 254 (398)
T ss_pred EeccCchhhhcCC--------------------------------------cccchhhhhceecccCCCceEEEEEecCC
Confidence 9998743222211 0112223344554433 11 2 222334
Q ss_pred CCeEEEEEccCCCcc---ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997 300 DSCLILWDARVGTSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (496)
Q Consensus 300 dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~ 376 (496)
-+.|+.||+...... ...........|.+++.++ ++.++|.|+.||.|.|++..++. .....-+.|...|+
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq-----~~~~vk~aH~~~VT 328 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQ-----RLQYVKEAHLGFVT 328 (398)
T ss_pred CCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceee-----eeEeehhhheeeee
Confidence 456666666543320 1111123345799999999 99999999999999999999843 23334467999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.+.|+|+.+++ ++-+.|..+.|..+..
T Consensus 329 ~ltF~Pdsr~~-~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 329 GLTFSPDSRYL-ASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEEEcCCcCcc-cccccCCceeEEEEee
Confidence 99999999974 6888899999988866
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=3.7e-16 Score=142.17 Aligned_cols=259 Identities=13% Similarity=0.154 Sum_probs=190.3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~ 221 (496)
.-..+.|+. +|..|+.|+..|.|-.+|..+. +....+.- ...|..+.|..+.++||.+- ...+.
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~------------~L~~Ei~v--~Etv~Dv~~LHneq~~AVAQ-K~y~y 194 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTK------------KLHFEINV--METVRDVTFLHNEQFFAVAQ-KKYVY 194 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccc------------eeeeeeeh--hhhhhhhhhhcchHHHHhhh-hceEE
Confidence 356788888 9999999999999999999988 33333332 33588999998888777664 67899
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
|||-.... ++.+..| ..|..+.|-|.. .+|++++..|
T Consensus 195 vYD~~GtE-----------------------------------------lHClk~~-~~v~rLeFLPyH-fLL~~~~~~G 231 (545)
T KOG1272|consen 195 VYDNNGTE-----------------------------------------LHCLKRH-IRVARLEFLPYH-FLLVAASEAG 231 (545)
T ss_pred EecCCCcE-----------------------------------------Eeehhhc-Cchhhhcccchh-heeeecccCC
Confidence 99864311 2333333 468999999998 8999999999
Q ss_pred eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc
Q 010997 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381 (496)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 381 (496)
.++--|+..++ .+..+....+.+..++-+| -...+-+|...|+|.+|...+ ..++..+-.|.++|.+|++.
T Consensus 232 ~L~Y~DVS~Gk--lVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 232 FLKYQDVSTGK--LVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVSSIAVD 302 (545)
T ss_pred ceEEEeechhh--hhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcceEEEC
Confidence 99999999998 5555666778889999999 788999999999999999988 78899999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT 461 (496)
Q Consensus 382 p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~ 461 (496)
++|.+ +||++.|..|+|||++...+ +..... ..+...+++|..| .|+++.+ ..
T Consensus 303 ~~G~Y-MaTtG~Dr~~kIWDlR~~~q--------------l~t~~t--p~~a~~ls~Sqkg-lLA~~~G---------~~ 355 (545)
T KOG1272|consen 303 RGGRY-MATTGLDRKVKIWDLRNFYQ--------------LHTYRT--PHPASNLSLSQKG-LLALSYG---------DH 355 (545)
T ss_pred CCCcE-EeecccccceeEeeeccccc--------------cceeec--CCCcccccccccc-ceeeecC---------Ce
Confidence 99997 57999999999999998521 111111 2356778888643 3443333 57
Q ss_pred EEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 462 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 462 i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|.||.=.-.. .+..+....-....++|..|.|.|
T Consensus 356 v~iw~d~~~~-s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 356 VQIWKDALKG-SGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred eeeehhhhcC-CCCCCcchhhhccCcccccceecc
Confidence 9999633110 001111111111234788888776
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-14 Score=127.81 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=173.9
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCc
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS 219 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~ 219 (496)
-.+.-++|++ .-.-+|++..|-.|++||-... ....++......|+|++|-|.+. .|+.|. -+-
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~ksst-------------~pt~Lks~sQrnvtclawRPlsaselavgC-r~g 163 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSST-------------CPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAG 163 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCCC-------------CCceecchhhcceeEEEeccCCcceeeeee-cce
Confidence 4577889988 5567888999999999997653 11234433334589999999754 566666 456
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC--eeeeecCCCceeEEEEccCCCceEEEE
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP--RGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|++|........... ..+....+ +....+| .+|++++|.++| ..++++
T Consensus 164 IciW~~s~tln~~r~----------------------------~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tA 213 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRN----------------------------IRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTA 213 (445)
T ss_pred eEEEEcCcccccccc----------------------------cccccccchhheeCCCC-ceeeEEEEcCCC-CEEeec
Confidence 999987642211000 00011111 1233455 689999999999 567776
Q ss_pred c-CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997 298 G-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (496)
Q Consensus 298 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~ 376 (496)
+ .|..|.|||..++....+. ....+.+.-+.||| ++.+|..++.|+..++|...+. .....-.- -.+.|.
T Consensus 214 S~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~-----wt~erw~l-gsgrvq 284 (445)
T KOG2139|consen 214 SFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS-----WTKERWIL-GSGRVQ 284 (445)
T ss_pred ccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehhccc-----ceecceec-cCCcee
Confidence 6 5778999999998743333 24557788999999 9999999999999999965542 23333232 345899
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe------cC---CCCCcceEEecCCCCcEEE
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH------AG---HRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~---h~~~V~~~~~~p~~~~l~~ 447 (496)
..+|+|+|++||.+++. .-++|.+...++..............++..+ .+ -.+.+.+++|.|.|.++++
T Consensus 285 tacWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred eeeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence 99999999998877764 4556776654433322211100111111111 11 2467899999999999988
Q ss_pred EecCCCCCCCCCCeEEEeecCCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
+.-...-.--.-..|.+||....
T Consensus 363 ~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 363 IFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEcCCchhhhhhhhhhhhccccc
Confidence 76432000111245666776543
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.2e-14 Score=139.59 Aligned_cols=239 Identities=11% Similarity=0.094 Sum_probs=152.6
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec---CCCcEEEEecCCccccccCCcccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG---KDKSVVLWSIQDHITSSATDPATA 239 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~---~Dg~i~iwd~~~~~~~~~~~~~~~ 239 (496)
..|.+||.... .+ ..+..+.. .+.+.+|+|||+.|+..+ .+..|.+|++.++..
T Consensus 179 ~~l~~~d~dg~------------~~-~~lt~~~~-~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------- 235 (429)
T PRK03629 179 YELRVSDYDGY------------NQ-FVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------- 235 (429)
T ss_pred eeEEEEcCCCC------------CC-EEeecCCC-ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe---------
Confidence 37899998765 22 22333433 578999999999887653 245789999875432
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCcccee
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK 317 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 317 (496)
..+....+.+..+.|+|+|..++++.+.+| .|.+||+.++. . .
T Consensus 236 --------------------------------~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~-~ 280 (429)
T PRK03629 236 --------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--I-R 280 (429)
T ss_pred --------------------------------EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--E-E
Confidence 111112233446799999955555555555 58889998776 2 2
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEE--eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997 318 VEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMF--DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (496)
Q Consensus 318 ~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iw--d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d 394 (496)
.+..+...+....|+| ++..|+..+. ++...|| |+.. + ....+..+........|+|+|.+|+.++..+
T Consensus 281 ~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~------g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 281 QVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING------G-APQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred EccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC------C-CeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 3334455678899999 8887776655 4555555 5544 2 3344444445567899999999765555444
Q ss_pred --CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCc
Q 010997 395 --GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 472 (496)
Q Consensus 395 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~ 472 (496)
..|.+||+..... ..+. .. .......|+|+|..++.++.+. ....+.++++.
T Consensus 353 g~~~I~~~dl~~g~~-------------~~Lt--~~--~~~~~p~~SpDG~~i~~~s~~~-----~~~~l~~~~~~---- 406 (429)
T PRK03629 353 GQQHIAKQDLATGGV-------------QVLT--DT--FLDETPSIAPNGTMVIYSSSQG-----MGSVLNLVSTD---- 406 (429)
T ss_pred CCceEEEEECCCCCe-------------EEeC--CC--CCCCCceECCCCCEEEEEEcCC-----CceEEEEEECC----
Confidence 3588889876311 1111 11 1234678999998877655422 12457778776
Q ss_pred CCchHHHHHHHhccceEEEeccCC
Q 010997 473 RPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 473 ~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.....+.+|.+.+...+|+|
T Consensus 407 ---G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 407 ---GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---CCCeEECccCCCCcCCcccCC
Confidence 445566778888999999998
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.1e-14 Score=142.67 Aligned_cols=279 Identities=13% Similarity=0.187 Sum_probs=180.8
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC---CceEEecCCCcEEE
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE---PYVLSGGKDKSVVL 222 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~---~~l~sg~~Dg~i~i 222 (496)
-.|++ +.+.++....+ .|.||...++ .++..+.+|.. ++..+.+.|.. .++++++.||.|++
T Consensus 22 avfSn-D~k~l~~~~~~-~V~VyS~~Tg------------~~i~~l~~~~a-~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 22 AVFSN-DAKFLFLCTGN-FVKVYSTATG------------ECITSLEDHTA-PLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred ccccc-CCcEEEEeeCC-EEEEEecchH------------hhhhhcccccC-ccceeeecCCCccceEEEEEecCccEEE
Confidence 34677 66666665554 9999999999 66678999998 68899888864 37889999999999
Q ss_pred EecCCccccccCCccccc----c----CCCCCceeccCCC---------CCCCCC--CCCCCCCcCCeeeeecCCCceeE
Q 010997 223 WSIQDHITSSATDPATAK----S----AGSSGSIIKQSPK---------PGDGND--KAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
||...+............ . ...+......... ...... .............+..|.. -..
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~ 165 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKS 165 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-Ccc
Confidence 999887543322221100 0 0000000000000 000000 0000000011111222322 356
Q ss_pred EEEccCCCceEEEEcCCCeEEEEEccCCCcc--ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
+.+++.+ .+.....+..+.+|+....... .......|...++|.+++| +++++|+|..||.|.+|.--.. ...
T Consensus 166 I~~~~~g--e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~--~~~ 240 (792)
T KOG1963|consen 166 IVDNNSG--EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGS--SDD 240 (792)
T ss_pred EEEcCCc--eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEecccc--ccc
Confidence 7777777 3555556778999998774411 1112235777799999999 9999999999999999953321 011
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
....+.+..|...|++++|+++|.+|+ ||+..|.+.+|.+.+.++ +.+ ..-.++|..+.++|+
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~k-------------qfL---PRLgs~I~~i~vS~d 303 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKK-------------QFL---PRLGSPILHIVVSPD 303 (792)
T ss_pred cccceEEEecccccceeEEecCCceEe-ecccceEEEEEeecCCCc-------------ccc---cccCCeeEEEEEcCC
Confidence 345667888999999999999999865 999999999999998532 222 223468999999998
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
+....+.++ |+.|.+-...++
T Consensus 304 s~~~sl~~~--------DNqI~li~~~dl 324 (792)
T KOG1963|consen 304 SDLYSLVLE--------DNQIHLIKASDL 324 (792)
T ss_pred CCeEEEEec--------CceEEEEeccch
Confidence 887664443 489999998743
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=1.7e-16 Score=153.82 Aligned_cols=225 Identities=19% Similarity=0.358 Sum_probs=168.5
Q ss_pred CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (496)
+.+..+.||-. +|+|..|...|.++++|+.|..|+||..++..+
T Consensus 181 k~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~----------------------------------- 224 (1113)
T KOG0644|consen 181 KNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARC----------------------------------- 224 (1113)
T ss_pred HHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhh-----------------------------------
Confidence 34456789987 799999999999999999999999999876544
Q ss_pred CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
+..+.||.+.|++++.+..+ .++++++.|..|++|-+..+. .+..+.+|++.|++|+|+| +++.+.|
T Consensus 225 -----lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP-----~~sss~d 291 (1113)
T KOG0644|consen 225 -----LASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSP-----RASSSDD 291 (1113)
T ss_pred -----hccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCc-----cccCCCC
Confidence 35678999999999998877 789999999999999999988 6777889999999999999 2378899
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
|++++||.+-........+. .+. ...-+.++.|..++.. ++|++.|+.-..|.+...
T Consensus 292 gt~~~wd~r~~~~~y~prp~-~~~-~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l-------------------- 348 (1113)
T KOG0644|consen 292 GTCRIWDARLEPRIYVPRPL-KFT-EKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQL-------------------- 348 (1113)
T ss_pred CceEeccccccccccCCCCC-Ccc-cccceeeeeccccccc-cccccCCcccccchhhHh--------------------
Confidence 99999999821100001111 122 2356778888888875 579999999988887652
Q ss_pred ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
..|...+.-+..+.+-....+++ -.+-.+++|++. +++++..+.+|...+..+.+||
T Consensus 349 -~~~~~~lif~t~ssd~~~~~~~a-------r~~~~~~vwnl~------~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 349 -AWRSNLLIFVTRSSDLSSIVVTA-------RNDHRLCVWNLY------TGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred -hhhccceEEEeccccccccceee-------eeeeEeeeeecc------cchhhhhhcccccceeeeeecC
Confidence 11111121122221222223322 234789999999 8999999999999999999988
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5e-15 Score=138.28 Aligned_cols=302 Identities=17% Similarity=0.249 Sum_probs=194.7
Q ss_pred CCCeEEEEEEeccCcchhhhcc--ccccC-cccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997 97 VPNTLVIANCEVVKPRVAAAEH--ISQFN-EEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 97 ~~~~l~i~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~ 173 (496)
..|.+.|++++.-+........ ..... .......+..++-+.|+..-+.|..+|+...++|||..-..|++||+...
T Consensus 5 s~NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL 84 (703)
T KOG2321|consen 5 SVNDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL 84 (703)
T ss_pred ccCceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccc
Confidence 4677788887754432111100 00000 00112345667888999999999999955566788999999999999876
Q ss_pred CCccccCCCCCCCCceEEecCCCCcceeee-ecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997 174 PNRHAVLGATNSRPDLILTGHQDNAEFALA-MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~-~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
...+..|.+..+..+. ++.|-..++.--.|.+|-+..--....
T Consensus 85 --------------SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy---------------------- 128 (703)
T KOG2321|consen 85 --------------SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY---------------------- 128 (703)
T ss_pred --------------eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee----------------------
Confidence 2456677665443333 333333444444577776653221000
Q ss_pred CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec
Q 010997 253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332 (496)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 332 (496)
.+ .-.....+++++..... |+.++....|.-+++..+. .+..+....+.++++..+
T Consensus 129 --------------------~~-RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 129 --------------------RT-RIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSIN 184 (703)
T ss_pred --------------------ee-ecCcCCccccccCCCcc-EEEeecCcceEEEEccccc--cccccccccccceeeeec
Confidence 00 00123356677655433 4445555678888998888 566666677899999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe------ccCCC-----CEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF------EGHSA-----AVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 333 p~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~------~~h~~-----~i~~l~~sp~~~~llas~~~dg~i~iwd 401 (496)
+ ...+|++|+.+|.|..||.|. ...+.++ ..|.+ .|+++.|+.+|-. +++|..+|.|.|||
T Consensus 185 ~-~hgLla~Gt~~g~VEfwDpR~------ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 185 E-EHGLLACGTEDGVVEFWDPRD------KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYD 256 (703)
T ss_pred C-ccceEEecccCceEEEecchh------hhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEE
Confidence 9 889999999999999999998 3333333 23333 4999999998875 68999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCC-CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH
Q 010997 402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD-PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA 480 (496)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~-~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~ 480 (496)
++... .++..-.+...+|..+.|.+.+ ...++|+.. ..++|||-. +++.+.
T Consensus 257 LRa~~--------------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk--------~~~kiWd~~------~Gk~~a 308 (703)
T KOG2321|consen 257 LRASK--------------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK--------RILKIWDEC------TGKPMA 308 (703)
T ss_pred cccCC--------------ceeecccCCccceeeecccccCCCceEEecch--------HHhhhcccc------cCCcee
Confidence 99841 2232233445689999998763 334555443 789999998 566666
Q ss_pred HHHhccceEEEeccC
Q 010997 481 ELEKFKAHVISCTSK 495 (496)
Q Consensus 481 ~l~~h~~~v~~~~~s 495 (496)
.++.-. .+..+++-
T Consensus 309 siEpt~-~lND~C~~ 322 (703)
T KOG2321|consen 309 SIEPTS-DLNDFCFV 322 (703)
T ss_pred eccccC-CcCceeee
Confidence 665333 25555543
No 212
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.65 E-value=4.5e-14 Score=121.68 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=185.0
Q ss_pred cceEEEecCCCceeEEEecC--CCCc-EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997 131 VKKHKTIIHPGEVNRIRELP--QNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p--~~~~-~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~ 207 (496)
...++...|. .++.+.|.- .++. .++-+-.+|.|.++..........+.+ +....-... .-.++.|++.
T Consensus 61 l~~~q~~dts-~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~------ls~~ki~~~-~~lslD~~~~ 132 (339)
T KOG0280|consen 61 LDTLQCTDTS-TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG------LSSKKISVV-EALSLDISTS 132 (339)
T ss_pred cceeeeeccc-ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc------cchhhhhhe-eeeEEEeecc
Confidence 3344444444 466666653 3444 567777889999998776532221111 100000001 1247789998
Q ss_pred CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
+..++++..+|.+.+-+.... ..+..+.++.|.-++....|+
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~--------------------------------------~le~vq~wk~He~E~Wta~f~ 174 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEM--------------------------------------VLEKVQTWKVHEFEAWTAKFS 174 (339)
T ss_pred CceEEEEcCCCcEEEEeccee--------------------------------------eeeecccccccceeeeeeecc
Confidence 989999999999985554321 122235778899999999999
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
...++++.+|++|+.+..||+|.+..-.....+.|...|.+|.-+|..+.+++||+.|-.|++||.|++. +++..
T Consensus 175 ~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-----kPl~~ 249 (339)
T KOG0280|consen 175 DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-----KPLFK 249 (339)
T ss_pred cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-----Ccccc
Confidence 8888999999999999999999655333333568999999999999789999999999999999999864 56554
Q ss_pred eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
-. -.+.|..+.++|.-...+..++.-+-.+|-+++....+. ...+..+..|.+-++.-.|... ..++|
T Consensus 250 ~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~----------~~~~~s~~~hdSl~YG~DWd~~-~~~lA 317 (339)
T KOG0280|consen 250 AK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEF----------QIVLPSDKIHDSLCYGGDWDSK-DSFLA 317 (339)
T ss_pred Cc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccch----------heeeeccccccceeeccccccc-cceee
Confidence 43 348899999999754333345555557888887642221 1245567788888888888554 45688
Q ss_pred EecCCCCCCCCCCeEE-EeecC
Q 010997 448 SVSDDCDSTGGGGTLQ-IWRMS 468 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~-iw~~~ 468 (496)
+|+- .|+.++ +|-.-
T Consensus 318 TCsF------YDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 318 TCSF------YDKKIRQLWLHI 333 (339)
T ss_pred eeec------cccceeeeeeec
Confidence 8664 378855 88544
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3.8e-14 Score=139.73 Aligned_cols=239 Identities=12% Similarity=0.098 Sum_probs=152.4
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEEecCCccccccCCcccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATA 239 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~ 239 (496)
..|.+||.... .+ ..+..+.. .+.+.+|+|+|+.|+.++. +..|.+||+.++..
T Consensus 184 ~~l~i~D~~g~------------~~-~~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------- 240 (433)
T PRK04922 184 YALQVADSDGY------------NP-QTILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------- 240 (433)
T ss_pred EEEEEECCCCC------------Cc-eEeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---------
Confidence 36899998654 11 23444544 5789999999998887763 34699999875432
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCcccee
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK 317 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 317 (496)
..+....+...++.|+|++..++++.+.+| .|.+||+.++. ..
T Consensus 241 --------------------------------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~ 285 (433)
T PRK04922 241 --------------------------------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LT 285 (433)
T ss_pred --------------------------------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eE
Confidence 122223334457899999965556666665 59999998776 23
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEc-CCCc--EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997 318 VEKAHDADLHCVDWNPLDDNLILTGS-ADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (496)
Q Consensus 318 ~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d 394 (496)
.+..+.......+|+| ++..|+.++ .+|. |.++|+.. +. ...+..+......++|+|+|++|+++...+
T Consensus 286 ~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~ 357 (433)
T PRK04922 286 RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSG 357 (433)
T ss_pred ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CC-eEEeecCCCCccCEEECCCCCEEEEEECCC
Confidence 3344555567889999 888777665 4555 55556654 22 333333334455789999999765554433
Q ss_pred C--cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCc
Q 010997 395 G--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 472 (496)
Q Consensus 395 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~ 472 (496)
+ .|.+||+..... .. +. +........|+|++..++.+.... ..+.|.++++.
T Consensus 358 ~~~~I~v~d~~~g~~-------------~~---Lt-~~~~~~~p~~spdG~~i~~~s~~~-----g~~~L~~~~~~---- 411 (433)
T PRK04922 358 GQYRIAVMDLSTGSV-------------RT---LT-PGSLDESPSFAPNGSMVLYATREG-----GRGVLAAVSTD---- 411 (433)
T ss_pred CceeEEEEECCCCCe-------------EE---CC-CCCCCCCceECCCCCEEEEEEecC-----CceEEEEEECC----
Confidence 3 589999876311 11 11 222345679999998877654421 23567777775
Q ss_pred CCchHHHHHHHhccceEEEeccCC
Q 010997 473 RPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 473 ~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.....+..+.+.+...+|||
T Consensus 412 ---g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 ---GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---CCceEEcccCCCCCCCCccCC
Confidence 334455555667788899998
No 214
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=1.3e-13 Score=131.45 Aligned_cols=243 Identities=9% Similarity=0.144 Sum_probs=147.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe-cCCCcEEEEecCC-ccccc
Q 010997 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG-GKDKSVVLWSIQD-HITSS 232 (496)
Q Consensus 155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg-~~Dg~i~iwd~~~-~~~~~ 232 (496)
++++...++.|.+||+.+.. ..+....+... + ....++++|++++|+++ ..++.|.+|+++. +...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g---------~l~~~~~~~~~-~-~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~- 71 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEG---------ALTLLQVVDVP-G-QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT- 71 (330)
T ss_pred EEEEcCCCCCEEEEEECCCC---------ceeeeeEEecC-C-CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-
Confidence 34455778999999996431 11223344322 2 35689999999987665 4588999999862 1110
Q ss_pred cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (496)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (496)
..... ...+....++|+|++..++++...++.|.+|++....
T Consensus 72 -------------------------------------~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 72 -------------------------------------FAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred -------------------------------------Eeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 00111 1122456899999995444455568999999997432
Q ss_pred cc--ceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCC-CCCceEeccCCCCEEEEEEcCCCCCEE
Q 010997 313 SP--VIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGV-GSPINKFEGHSAAVLCVQWSPDKSSVF 388 (496)
Q Consensus 313 ~~--~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~-~~~~~~~~~h~~~i~~l~~sp~~~~ll 388 (496)
.. ..... .+.....+++++| +++++ ++...++.|.+||+.+...... ........ .......++|+|++++++
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 114 IPVAPIQII-EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCCCceeec-cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEE
Confidence 11 11222 2334567889999 77766 4555679999999976210000 00011111 123467899999999877
Q ss_pred EEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC------CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeE
Q 010997 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL 462 (496)
Q Consensus 389 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i 462 (496)
++...++.|.+|++....... ..+..... +......+.++|++++++++... ++.|
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~-----------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I 252 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEI-----------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-------ASLI 252 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCE-----------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-------CCeE
Confidence 665558999999997421110 11111111 11123468899999988875433 4899
Q ss_pred EEeecC
Q 010997 463 QIWRMS 468 (496)
Q Consensus 463 ~iw~~~ 468 (496)
.+|++.
T Consensus 253 ~v~~i~ 258 (330)
T PRK11028 253 SVFSVS 258 (330)
T ss_pred EEEEEe
Confidence 999996
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.5e-13 Score=135.65 Aligned_cols=239 Identities=13% Similarity=0.130 Sum_probs=153.9
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEEecCCccccccCCcccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATA 239 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~ 239 (496)
..|.++|.... . ...+..|.. .+.+.+|+|||+.|+..+. +..|.+||+.++..
T Consensus 182 ~~l~~~d~dg~------------~-~~~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------- 238 (435)
T PRK05137 182 KRLAIMDQDGA------------N-VRYLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------- 238 (435)
T ss_pred eEEEEECCCCC------------C-cEEEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------
Confidence 47888887654 1 234555655 6889999999998887653 46899999975432
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe--EEEEEccCCCcccee
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIK 317 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~ 317 (496)
..+..+.+.+....|+|+|..++++.+.++. |.+||+.++. ..
T Consensus 239 --------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~ 283 (435)
T PRK05137 239 --------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TT 283 (435)
T ss_pred --------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eE
Confidence 2334455567788999999655667776665 6677887765 23
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEcC-CC--cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997 318 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (496)
Q Consensus 318 ~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d 394 (496)
.+..+........|+| ++..|+..+. +| .|.++|+.. .....+..+...+....|+|+|+.|+.+....
T Consensus 284 ~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g-------~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 284 RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG-------SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC-------CCeEEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence 3444555667899999 8888776653 33 577778764 33444544455677889999999765444333
Q ss_pred --CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCC--CeEEEeecCCC
Q 010997 395 --GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG--GTLQIWRMSDL 470 (496)
Q Consensus 395 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~D--g~i~iw~~~~~ 470 (496)
..|.+||+.... ...+ . .+ ..+....|+|++..++.+.... +.. ..|.++++..
T Consensus 356 ~~~~i~~~d~~~~~-------------~~~l-t-~~--~~~~~p~~spDG~~i~~~~~~~----~~~~~~~L~~~dl~g- 413 (435)
T PRK05137 356 GQFSIGVMKPDGSG-------------ERIL-T-SG--FLVEGPTWAPNGRVIMFFRQTP----GSGGAPKLYTVDLTG- 413 (435)
T ss_pred CceEEEEEECCCCc-------------eEec-c-CC--CCCCCCeECCCCCEEEEEEccC----CCCCcceEEEEECCC-
Confidence 357788875421 1111 1 12 2467889999998877665432 222 3677777762
Q ss_pred CcCCchHHHHHHHhccceEEEeccCC
Q 010997 471 IYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 471 ~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+. ...+. ..+.+...+|+|
T Consensus 414 -----~~-~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 414 -----RN-EREVP-TPGDASDPAWSP 432 (435)
T ss_pred -----Cc-eEEcc-CCCCccCcccCC
Confidence 22 23333 234467778887
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2e-13 Score=122.16 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=176.4
Q ss_pred CCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 140 PGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 140 ~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
...|..++|.-+ ...++...+.+-.+..+.++........ .......+... .|.++... ...|++|-.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~------~~~~~~~l~~~-~I~gl~~~--dg~Litc~~sG 125 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL------DDAKTVSLGTK-SIKGLKLA--DGTLITCVSSG 125 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcccccc------ccccccccccc-cccchhhc--CCEEEEEecCC
Confidence 345667777652 3345555556667777777665322111 00112222333 45555543 34688899999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.+.+|....+... ..++..+..+ ..+..|.-++..+.++++|+
T Consensus 126 ~l~~~~~k~~d~h------------------------------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GG 168 (412)
T KOG3881|consen 126 NLQVRHDKSGDLH------------------------------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGG 168 (412)
T ss_pred cEEEEeccCCccc------------------------------------cccceeeecC-CceeeeccCCCCCceEecCc
Confidence 9999998743211 1112233333 45677777888888889999
Q ss_pred CC--CeEEEEEccCCCccceeeecc---------CCCCeEEEEecCCC--CcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997 299 DD--SCLILWDARVGTSPVIKVEKA---------HDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 299 ~d--g~i~iwd~~~~~~~~~~~~~~---------~~~~v~~i~~sp~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 365 (496)
.. ..+.|||+...+ .+...+. -.-.++.+.|-+ . .+.||+++.-+.|++||.+.. .+|+
T Consensus 169 ke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q-----RRPV 240 (412)
T KOG3881|consen 169 KENINELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ-----RRPV 240 (412)
T ss_pred hhcccceeeeecccce--eeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc-----Ccce
Confidence 99 899999998874 2222111 123467888887 5 789999999999999999964 4889
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCCcceEEecCCCCc
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPW 444 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~p~~~~ 444 (496)
..|..-..+|+++...|.+.+| .+|..-+.+..||++.. .++.. +.|..+.|+++..+|..++
T Consensus 241 ~~fd~~E~~is~~~l~p~gn~I-y~gn~~g~l~~FD~r~~---------------kl~g~~~kg~tGsirsih~hp~~~~ 304 (412)
T KOG3881|consen 241 AQFDFLENPISSTGLTPSGNFI-YTGNTKGQLAKFDLRGG---------------KLLGCGLKGITGSIRSIHCHPTHPV 304 (412)
T ss_pred eEeccccCcceeeeecCCCcEE-EEecccchhheecccCc---------------eeeccccCCccCCcceEEEcCCCce
Confidence 9999889999999999999965 58988999999999985 33333 6788899999999997776
Q ss_pred EEEEecCCCCCCCCCCeEEEeecC
Q 010997 445 TVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 445 l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
++ ++|-|..|||+|+.
T Consensus 305 la--------s~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 305 LA--------SCGLDRYVRIHDIK 320 (412)
T ss_pred EE--------eeccceeEEEeecc
Confidence 54 66677999999998
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=3.7e-13 Score=119.66 Aligned_cols=235 Identities=11% Similarity=0.186 Sum_probs=157.4
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC--Cc
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD--KS 219 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D--g~ 219 (496)
.++.+.|.. +...|..|+.|| -++|..+.... .... .-.+..|--+-|+ ..++|..+.+ +.
T Consensus 7 ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k-----------~~~~--~~~~~~IvEmLFS--SSLvaiV~~~qpr~ 69 (391)
T KOG2110|consen 7 TINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEK-----------CFSK--DTEGVSIVEMLFS--SSLVAIVSIKQPRK 69 (391)
T ss_pred ceeeeeecc-ceeEEEccCCCc-eeEEecCchHH-----------hhcc--cCCCeEEEEeecc--cceeEEEecCCCce
Confidence 455666665 778898999886 57887765521 0000 0111123233343 3445544433 35
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
+++.++...... ..+ ....+|.+|.++.+ .|+.+-.
T Consensus 70 Lkv~~~Kk~~~I----------------------------------------Ce~-~fpt~IL~VrmNr~---RLvV~Le 105 (391)
T KOG2110|consen 70 LKVVHFKKKTTI----------------------------------------CEI-FFPTSILAVRMNRK---RLVVCLE 105 (391)
T ss_pred EEEEEcccCceE----------------------------------------EEE-ecCCceEEEEEccc---eEEEEEc
Confidence 788877643221 111 13457889999764 4666655
Q ss_pred CCeEEEEEccCCCccceeeec---cCCCCeEEEEecCCCCcEEEEEc--CCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 300 DSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~i~~sp~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
+. |.|||++..+ .+.+.. .+...+.++++++ .+.++|--+ ..|.|.|||..+ .+++..+..|.++
T Consensus 106 e~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n------l~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 106 ES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN------LQPVNTINAHKGP 175 (391)
T ss_pred cc-EEEEecccce--eehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc------ceeeeEEEecCCc
Confidence 44 9999999887 444332 4556677777776 566777643 358999999999 6889999999999
Q ss_pred EEEEEEcCCCCCEEEEEeCCCc-EEEEECCCCCcccCCCCCCCCCCCeeEEEecC--CCCCcceEEecCCCCcEEEEecC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
+.+++|+++|. +|||+++.|+ ||||.+..+ +.++.++. -.-.|.+++|+|+..+|.++.+
T Consensus 176 lAalafs~~G~-llATASeKGTVIRVf~v~~G---------------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~- 238 (391)
T KOG2110|consen 176 LAALAFSPDGT-LLATASEKGTVIRVFSVPEG---------------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN- 238 (391)
T ss_pred eeEEEECCCCC-EEEEeccCceEEEEEEcCCc---------------cEeeeeeCCceeeEEEEEEECCCCCeEEEecC-
Confidence 99999999998 6899999875 799999885 34444432 1236889999999887664433
Q ss_pred CCCCCCCCCeEEEeecCCCC
Q 010997 452 DCDSTGGGGTLQIWRMSDLI 471 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~~~ 471 (496)
-++|+||.+....
T Consensus 239 -------TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 -------TETVHIFKLEKVS 251 (391)
T ss_pred -------CCeEEEEEecccc
Confidence 3799999998553
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.1e-13 Score=134.03 Aligned_cols=243 Identities=11% Similarity=0.067 Sum_probs=147.9
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC---CcEEEEecCCccccccCCcccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA 239 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D---g~i~iwd~~~~~~~~~~~~~~~ 239 (496)
..|.++|.... . ...+..+.. .+.+.+|+|+|+.|+..+.+ ..|.+||+.++..
T Consensus 176 ~~L~~~D~dG~------------~-~~~l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--------- 232 (427)
T PRK02889 176 YQLQISDADGQ------------N-AQSALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--------- 232 (427)
T ss_pred cEEEEECCCCC------------C-ceEeccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---------
Confidence 46777776443 1 123334544 57899999999988876642 3599999976532
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE 319 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 319 (496)
..+....+.+....|+|++..++++.+.+|...||.+..... ....+
T Consensus 233 --------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~l 279 (427)
T PRK02889 233 --------------------------------RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-GLRRL 279 (427)
T ss_pred --------------------------------EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC-CcEEC
Confidence 122223344567899999965556778888877776543221 12333
Q ss_pred ccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--c
Q 010997 320 KAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--L 396 (496)
Q Consensus 320 ~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~ 396 (496)
..+........|+| ++..|+..+ .+|...||.+.... + ....+..+.......+|+|+|++|+.++..++ .
T Consensus 280 t~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~----g-~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 280 TQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASG----G-AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred CCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCC----C-ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEE
Confidence 34555567789999 888777554 35677777654311 2 22222222333456889999997654443333 6
Q ss_pred EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCch
Q 010997 397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 476 (496)
Q Consensus 397 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~ 476 (496)
|.+||+..... ..+ .. ........|+|++..++.+..+. | ...+.+-++. +
T Consensus 354 I~v~d~~~g~~-------------~~l---t~-~~~~~~p~~spdg~~l~~~~~~~----g-~~~l~~~~~~-------g 404 (427)
T PRK02889 354 LYVQDLATGQV-------------TAL---TD-TTRDESPSFAPNGRYILYATQQG----G-RSVLAAVSSD-------G 404 (427)
T ss_pred EEEEECCCCCe-------------EEc---cC-CCCccCceECCCCCEEEEEEecC----C-CEEEEEEECC-------C
Confidence 99999876311 111 11 12346789999998877765432 1 1234444443 4
Q ss_pred HHHHHHHhccceEEEeccCC
Q 010997 477 EVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 477 ~~~~~l~~h~~~v~~~~~sP 496 (496)
.....+..+.+.+...+|+|
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CceEEeecCCCCCCCCccCC
Confidence 44455566777788889988
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=3.5e-14 Score=131.72 Aligned_cols=221 Identities=19% Similarity=0.265 Sum_probs=151.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHIT 230 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~ 230 (496)
.+--|..|-..|.|++.|....+... +.. .-..-....|+|+.|-|.+. .++.+-.+|.+.++|......
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sk-lfn--------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~ 254 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSK-LFN--------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG 254 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHH-hhh--------hcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence 45556677788899998876531110 000 00011112589999999754 666777899999998742110
Q ss_pred cccCCccccccCCCCCceeccCCCCCCCCCCCCC-CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEcc
Q 010997 231 SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD-GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 309 (496)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 309 (496)
...+.......+.. -.+..+. .....|+..+.--.+.|+..+|+||| .+||+.+.||.++|+|..
T Consensus 255 --~t~p~~~~~k~~~~-----------f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fd 320 (636)
T KOG2394|consen 255 --ATAPSYQALKDGDQ-----------FAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFD 320 (636)
T ss_pred --CCCCcccccCCCCe-----------eEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeecc
Confidence 01110000000000 0000000 11124555555556789999999998 899999999999999998
Q ss_pred CCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC------
Q 010997 310 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD------ 383 (496)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~------ 383 (496)
+.. +.-..+.--+...|++|+| |+.||++|+.|--|.||.+.. .+.+..-.+|++.|..|+|.|-
T Consensus 321 t~e--Llg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e------rRVVARGqGHkSWVs~VaFDpytt~~ee 391 (636)
T KOG2394|consen 321 TQE--LLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE------RRVVARGQGHKSWVSVVAFDPYTTSTEE 391 (636)
T ss_pred HHH--HHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEecc------ceEEEeccccccceeeEeeccccccccc
Confidence 876 4444445567899999999 999999999999999999998 7888888999999999999831
Q ss_pred -----------------------------------------CCCEEEEEeCCCcEEEEECCC
Q 010997 384 -----------------------------------------KSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 384 -----------------------------------------~~~llas~~~dg~i~iwd~~~ 404 (496)
-.|-|.+.+.|-.+++||+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 392 WNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred ccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 124578889999999999975
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=1.8e-13 Score=118.44 Aligned_cols=159 Identities=20% Similarity=0.379 Sum_probs=110.5
Q ss_pred eEEEEccCCCceEEEEcC---------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEE--EcCCCcEEE
Q 010997 282 EDVTFCPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT--GSADNSVRM 350 (496)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s--gs~dg~i~i 350 (496)
..+.|+|.|..+++.... -+...||.++....+..........+|.+++|+| ++..||+ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 467899999655555541 2456677775554333333333456799999999 7777654 446789999
Q ss_pred EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997 351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (496)
||++. ..+..+. ...+..+.|+|+|++++ +++. .|.|.+||++.. ..+...
T Consensus 88 yd~~~-------~~i~~~~--~~~~n~i~wsP~G~~l~-~~g~~n~~G~l~~wd~~~~---------------~~i~~~- 141 (194)
T PF08662_consen 88 YDVKG-------KKIFSFG--TQPRNTISWSPDGRFLV-LAGFGNLNGDLEFWDVRKK---------------KKISTF- 141 (194)
T ss_pred EcCcc-------cEeEeec--CCCceEEEECCCCCEEE-EEEccCCCcEEEEEECCCC---------------EEeecc-
Confidence 99973 6777774 56788999999999754 5543 467999999864 333322
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
.|. .++.++|+|+|++++.+++.- .-..|+.++||++...
T Consensus 142 ~~~-~~t~~~WsPdGr~~~ta~t~~--r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 142 EHS-DATDVEWSPDGRYLATATTSP--RLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccC-cEEEEEEcCCCCEEEEEEecc--ceeccccEEEEEecCe
Confidence 233 478999999999988765531 2345799999999843
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2.4e-13 Score=121.68 Aligned_cols=213 Identities=17% Similarity=0.305 Sum_probs=156.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc-eEEecCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKD 217 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~-l~sg~~D 217 (496)
-.+.|-.++.. + ..|++|-.+|.+.+|....+... ..+...+..+.+ +..+.-++..++ +++|+..
T Consensus 104 ~~~~I~gl~~~--d-g~Litc~~sG~l~~~~~k~~d~h--------ss~l~~la~g~g--~~~~r~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 104 GTKSIKGLKLA--D-GTLITCVSSGNLQVRHDKSGDLH--------SSKLIKLATGPG--LYDVRQTDTDPYIVATGGKE 170 (412)
T ss_pred ccccccchhhc--C-CEEEEEecCCcEEEEeccCCccc--------cccceeeecCCc--eeeeccCCCCCceEecCchh
Confidence 34455555543 3 36778889999999999865211 234445555543 677887777665 4558888
Q ss_pred --CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--CCce
Q 010997 218 --KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQE 293 (496)
Q Consensus 218 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~ 293 (496)
..+.+||+++....+...... ...+.. .-.-.++++.|-+. . +.
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvp-----------------------------nD~L~L--rVPvW~tdi~Fl~g~~~-~~ 218 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVP-----------------------------NDRLGL--RVPVWITDIRFLEGSPN-YK 218 (412)
T ss_pred cccceeeeecccceeeeeccCCC-----------------------------Cccccc--eeeeeeccceecCCCCC-ce
Confidence 899999998764332211100 000000 01125678888776 4 68
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-eccCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHS 372 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~ 372 (496)
|++++.-+.+++||.+.++.|+. .+.-.+.+|+++...| +++++++|..-|.+..||+|. +..+.. +.+-.
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~-~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~t 290 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVA-QFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGIT 290 (412)
T ss_pred EEEEecceeEEEecCcccCccee-EeccccCcceeeeecC-CCcEEEEecccchhheecccC------ceeeccccCCcc
Confidence 99999999999999998886654 4456688999999999 999999999999999999998 555444 88899
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+.|.+|..+|.++ ++|++|-|+.|||+|+.+.
T Consensus 291 Gsirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 291 GSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred CCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 9999999999998 6789999999999999883
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5e-12 Score=124.15 Aligned_cols=219 Identities=13% Similarity=0.117 Sum_probs=137.3
Q ss_pred ecCCCceeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHT---DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..+.+.+...+|+| +++.||..+ .+..|++|++.++.. +.+..+.++ +..+.|+|||+.|+.
T Consensus 195 t~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~----------~~l~~~~~~----~~~~~~SPDG~~La~ 259 (429)
T PRK03629 195 HRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----------RQVASFPRH----NGAPAFSPDGSKLAF 259 (429)
T ss_pred ecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe----------EEccCCCCC----cCCeEECCCCCEEEE
Confidence 45667899999999 777776543 245799999977621 111222333 346899999997775
Q ss_pred e-cCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 214 G-GKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 214 g-~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
. +.+| .|.+||++++.. ..+..+...+....|+|++
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~-----------------------------------------~~lt~~~~~~~~~~wSPDG 298 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQI-----------------------------------------RQVTDGRSNNTEPTWFPDS 298 (429)
T ss_pred EEcCCCCcEEEEEECCCCCE-----------------------------------------EEccCCCCCcCceEECCCC
Confidence 4 4455 588888875422 2222333456788999999
Q ss_pred CceEEEEcCCCeEEEE--EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCCCCCCCCCc
Q 010997 291 AQEFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~ 365 (496)
..++++...++...|| |+..+. . ..+...........|+| ++.+|+..+.+ ..|.+||+.+ +. .
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~--~-~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~------g~-~ 367 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGA--P-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT------GG-V 367 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCC--e-EEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCC------CC-e
Confidence 4444444444555555 555544 2 22223344556789999 88888776543 3588899876 32 3
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCc---EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL---LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
..+.. ........|+|||..|+ .++.++. +.++++... ....+.+|.+.+...+|+|
T Consensus 368 ~~Lt~-~~~~~~p~~SpDG~~i~-~~s~~~~~~~l~~~~~~G~----------------~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 368 QVLTD-TFLDETPSIAPNGTMVI-YSSSQGMGSVLNLVSTDGR----------------FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEeCC-CCCCCCceECCCCCEEE-EEEcCCCceEEEEEECCCC----------------CeEECccCCCCcCCcccCC
Confidence 33432 12334678999999765 5555543 667777542 2334556778899999998
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=6.2e-12 Score=111.59 Aligned_cols=216 Identities=13% Similarity=0.198 Sum_probs=137.3
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCC--CceEEecCCCCcceeeeecCCCCceEEecC-
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR--PDLILTGHQDNAEFALAMCPTEPYVLSGGK- 216 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~- 216 (496)
+..|.|++|-|-....||.|+.. -|.||..+...+........... .+....|| .+|++|.|++||..|++++.
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC--ceeeEEEEcCCCCEEeecccC
Confidence 45799999999888888888875 69999887654332211111111 22334455 47999999999999998875
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
|..|.|||.+++..... . ....+.++-+.|+|++ .+|++
T Consensus 217 sssi~iWdpdtg~~~pL--------------------------------------~--~~glgg~slLkwSPdg-d~lfa 255 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPL--------------------------------------I--PKGLGGFSLLKWSPDG-DVLFA 255 (445)
T ss_pred cceEEEEcCCCCCcccc--------------------------------------c--ccCCCceeeEEEcCCC-CEEEE
Confidence 67999999987644211 1 1224568889999999 78888
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC---------CceE
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS---------PINK 367 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~---------~~~~ 367 (496)
+.-|+..++|....... ...- .-..+.|...+|+| .|..|+.+.. |.-++|.+.-........ ++..
T Consensus 256 At~davfrlw~e~q~wt-~erw-~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWT-KERW-ILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred ecccceeeeehhcccce-ecce-eccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 99999999996544331 1111 12345899999999 7766554432 334455443322111011 0111
Q ss_pred e-----cc----CCCCEEEEEEcCCCCCEEEEEeCC--------CcEEEEECCC
Q 010997 368 F-----EG----HSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEK 404 (496)
Q Consensus 368 ~-----~~----h~~~i~~l~~sp~~~~llas~~~d--------g~i~iwd~~~ 404 (496)
+ .. -.+.+.+++|.|.|.++ |+.-.. ..|.+||.+.
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyL-av~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYL-AVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEE-EEEEcCCchhhhhhhhhhhhcccc
Confidence 1 01 14678999999999985 444322 3466788776
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=5.9e-13 Score=117.22 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=178.4
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-----------CcceeeeecCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCPT 207 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-----------~~v~~l~~~p~ 207 (496)
-.+-|.+|.|.. .|.+||||..+|.|.+|.-+..... ..+....++.|.. ..|..+.|.++
T Consensus 24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~-------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKG-------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD 95 (433)
T ss_pred hhcceeeEEeec-ccceEeecCCCCeEEEeeccccccc-------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence 345688999988 8999999999999999987654320 1122334444432 24788999988
Q ss_pred CC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC------CCCcCCeeee-ecCC
Q 010997 208 EP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD------GPSVGPRGIY-NGHE 278 (496)
Q Consensus 208 ~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~h~ 278 (496)
++ .++....|++|++|.+................ +.......++.. .....+.+.+ ..|.
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~-----------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEG-----------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccC-----------CCCccceeeceeeccccceeeeeeeeeccccce
Confidence 65 56666779999999987543322100000000 000000000000 0112233343 4688
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-ceeeeccC-----CCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~-----~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd 352 (496)
--|+++.++.+. ..+++ .+|=.|.+|++.-.... .+...+.+ ..-|++..|+|...++|+-.++.|+|+|-|
T Consensus 165 yhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 165 YHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eEeeeeeecCcc-ceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 899999999988 44554 47889999998754421 11122222 356889999998889999999999999999
Q ss_pred CCCCCCC----------CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997 353 RRNLTSN----------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (496)
Q Consensus 353 ~~~~~~~----------~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 422 (496)
+|...-- ..+....-|..--..|..+.|+++|+++| +-+ --+|++||+....++. ..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv-----------~t 309 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPV-----------ET 309 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcc-----------eE
Confidence 9952100 00111111223345789999999999765 443 4689999997643221 11
Q ss_pred EEEecC---------CCCCc---ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 423 FFQHAG---------HRDKV---VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 423 ~~~~~~---------h~~~V---~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
...|.- -.+.| ..++|+.++.+++ |||..+.++++++..
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~--------TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVM--------TGSYNNVFRVFNLAR 360 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEe--------cccccceEEEecCCC
Confidence 111110 01223 3488998877766 888889999999654
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=6.7e-15 Score=134.09 Aligned_cols=193 Identities=16% Similarity=0.264 Sum_probs=158.9
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
-+.+.++.+|++|+.|+.-|.|..+|..+....... .-.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-----------------------------------------~v~ 170 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-----------------------------------------NVM 170 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeee-----------------------------------------ehh
Confidence 378999999999999999999999999875432111 123
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
..|.++.|-... ++||+ .....+.|||-...+ +..+.. ...|..+.|-| ...+|++++..|.++.-|+..
T Consensus 171 Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~GtE---lHClk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~--- 240 (545)
T KOG1272|consen 171 ETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNGTE---LHCLKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVST--- 240 (545)
T ss_pred hhhhhhhhhcch-HHHHh-hhhceEEEecCCCcE---Eeehhh-cCchhhhcccc-hhheeeecccCCceEEEeech---
Confidence 568899997766 55554 567899999965443 444433 36799999999 788999999999999999999
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
+..+..+..-.+.+..++-+|-+. ++-+|...|+|.+|.-... +.+..+-.|.++|.++++
T Consensus 241 ---GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~sk---------------ePLvKiLcH~g~V~siAv 301 (545)
T KOG1272|consen 241 ---GKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSK---------------EPLVKILCHRGPVSSIAV 301 (545)
T ss_pred ---hhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCc---------------chHHHHHhcCCCcceEEE
Confidence 899999998899999999999887 7789999999999998774 445556789999999999
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.++|.+++ |.|.|..++|||++.
T Consensus 302 ~~~G~YMa--------TtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 302 DRGGRYMA--------TTGLDRKVKIWDLRN 324 (545)
T ss_pred CCCCcEEe--------ecccccceeEeeecc
Confidence 99999887 888889999999995
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.7e-12 Score=126.58 Aligned_cols=221 Identities=12% Similarity=0.125 Sum_probs=137.5
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
+..|...+...+|+| +++.||..+.+ ..|++||+.++. . ..+..+.. ...+..|+|+|+.|+
T Consensus 199 lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~------------~-~~l~~~~g-~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 199 ILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQ------------R-ELVASFRG-INGAPSFSPDGRRLA 263 (433)
T ss_pred eecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCC------------E-EEeccCCC-CccCceECCCCCEEE
Confidence 446777899999999 77777776643 469999997762 1 12222322 345789999998765
Q ss_pred -EecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 213 -SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 213 -sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+.+.+| .|.+||+.++.. ..+..+.......+|+|+
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~-----------------------------------------~~lt~~~~~~~~~~~spD 302 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQL-----------------------------------------TRLTNHFGIDTEPTWAPD 302 (433)
T ss_pred EEEeCCCCceEEEEECCCCCe-----------------------------------------EECccCCCCccceEECCC
Confidence 555555 588888875432 223334444567899999
Q ss_pred CCceEEEEcCCCe--EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCC
Q 010997 290 SAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSP 364 (496)
Q Consensus 290 ~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~ 364 (496)
+..++++...+|. |.++|+.++. .. .+..+.......+|+| ++.+|+..+.++ .|.+||+.+ +.
T Consensus 303 G~~l~f~sd~~g~~~iy~~dl~~g~--~~-~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~------g~- 371 (433)
T PRK04922 303 GKSIYFTSDRGGRPQIYRVAASGGS--AE-RLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST------GS- 371 (433)
T ss_pred CCEEEEEECCCCCceEEEEECCCCC--eE-EeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC------CC-
Confidence 9444444445555 5556665554 22 2212333455789999 888887765443 699999876 33
Q ss_pred ceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
...+. +........|+|+|+.++.+....+ .|.++++... ....+..+.+.+...+|+|
T Consensus 372 ~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----------------~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 372 VRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----------------VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEEcccCCCCCCCCccCC
Confidence 23343 2234456799999997665554433 4666776542 1222334455677888887
No 227
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=9.3e-14 Score=133.47 Aligned_cols=279 Identities=20% Similarity=0.375 Sum_probs=194.9
Q ss_pred ccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997 130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (496)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~ 209 (496)
.+-..-.+.-.+.++++..+| .++-+|.++.-| +.+-|+...- .+..-+..-+...|-.+.|+|...
T Consensus 14 tf~kslsl~v~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~-----------~ppr~l~h~tpw~vad~qws~h~a 80 (1081)
T KOG0309|consen 14 TFGKSLSLKVDGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPF-----------TPPRWLHHITPWQVADVQWSPHPA 80 (1081)
T ss_pred ccCceeEEEecCcccceeecc-ccchhhhhhhcC-eEEEeccCCC-----------CCceeeeccCcchhcceecccCCC
Confidence 333334455677899999999 677777877765 5666776552 233333333333456778887633
Q ss_pred ---ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 210 ---YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 210 ---~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
.+++-+ ...-.+|++.... ....-..+.+|...|+++-|
T Consensus 81 ~~~wiVsts-~qkaiiwnlA~ss-------------------------------------~~aIef~lhghsraitd~n~ 122 (1081)
T KOG0309|consen 81 KPYWIVSTS-NQKAIIWNLAKSS-------------------------------------SNAIEFVLHGHSRAITDINF 122 (1081)
T ss_pred CceeEEecC-cchhhhhhhhcCC-------------------------------------ccceEEEEecCccceecccc
Confidence 455544 4455688876321 11122567899999999999
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
+|+.+.++++++.|..++.||+|+...+... ..........|+|+-.+++.+|+ +....|++||++.. +.++.
T Consensus 123 ~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys-~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~g-----s~pl~ 195 (1081)
T KOG0309|consen 123 NPQHPDVLATCSVDTYVHAWDMRSPHRPFYS-TSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKG-----STPLC 195 (1081)
T ss_pred CCCCCcceeeccccccceeeeccCCCcceee-eecccccCceeeecccCcchhhh-ccCCceEEEeccCC-----CcceE
Confidence 9999999999999999999999998865443 34556677889999866666665 45667999999984 47899
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC--------------------------------
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-------------------------------- 414 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------- 414 (496)
.+++|...|+.++|..-....+.+++.||+|++||..+...+......
T Consensus 196 s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~ 275 (1081)
T KOG0309|consen 196 SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLR 275 (1081)
T ss_pred EecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecc
Confidence 999999999999998754445569999999999998764332111100
Q ss_pred ---C-----CCCCCeeEEEecCCCCCcceEEecCCCC---------cEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997 415 ---T-----TNYPAGLFFQHAGHRDKVVDFHWNASDP---------WTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 473 (496)
Q Consensus 415 ---~-----~~~~~~~~~~~~~h~~~V~~~~~~p~~~---------~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~ 473 (496)
. .......+..+.||.+.|..+.|-..+. +-++ |-+.|.++++|-+.+.+++
T Consensus 276 c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLV-------TWSkD~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 276 CENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLV-------TWSKDQTLRLWPIDSQIQR 344 (1081)
T ss_pred ccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEE-------EeecCCceEeeeccHHHHH
Confidence 0 0113446778899999999999865433 4455 5556699999999865543
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.4e-11 Score=121.66 Aligned_cols=202 Identities=15% Similarity=0.141 Sum_probs=130.4
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
....|.+.|.+.+|+| +++.||..+. +..|++||+.++. . ..+..+.+ .+.+.+|+|+|+.|
T Consensus 196 ~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~------------~-~~l~~~~g-~~~~~~~SPDG~~l 260 (435)
T PRK05137 196 YLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQ------------R-ELVGNFPG-MTFAPRFSPDGRKV 260 (435)
T ss_pred EEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCc------------E-EEeecCCC-cccCcEECCCCCEE
Confidence 3456788999999999 7777776653 4689999998762 1 22334444 46788999999876
Q ss_pred E-EecCCCc--EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 212 L-SGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 212 ~-sg~~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
+ +.+.++. |.+||+.++.. ..+..+........|+|
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-----------------------------------------TRLTDSPAIDTSPSYSP 299 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-----------------------------------------EEccCCCCccCceeEcC
Confidence 5 6666665 66667654321 22334444566789999
Q ss_pred CCCceEEEEcCCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCCCCCCCC
Q 010997 289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~ 363 (496)
++..++++...+| .|.++|+..+. ...+..+...+....|+| ++..|+..+.+ ..|.+||+.. .
T Consensus 300 DG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~-------~ 368 (435)
T PRK05137 300 DGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG-------S 368 (435)
T ss_pred CCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCC-------C
Confidence 9944444433444 57788876655 222223345567789999 88888776543 3678888754 2
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCC-----cEEEEECCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK 404 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg-----~i~iwd~~~ 404 (496)
....+. ....+..+.|+|+|+.|+.++...+ .+.++|+..
T Consensus 369 ~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 369 GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 233333 2335678899999997665554332 577777755
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=126.29 Aligned_cols=229 Identities=16% Similarity=0.211 Sum_probs=167.9
Q ss_pred CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (496)
.....|.+|.+ .|..+.|+..|..|+||+.|..|.+||.........
T Consensus 133 ~l~~kL~~H~G-cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~-------------------------------- 179 (559)
T KOG1334|consen 133 RLQKKLNKHKG-CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS-------------------------------- 179 (559)
T ss_pred hhhhcccCCCC-ccceeeecccCceeeccCccceEEeehhhccCcccc--------------------------------
Confidence 34456888988 799999999999999999999999999976543221
Q ss_pred CCcCCeeeeecCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEc
Q 010997 266 PSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS 343 (496)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs 343 (496)
-..+|...|....|-|.. ...+++++.||.+++=.+..... .....+..|.++|+-++..|.+..-|.+++
T Consensus 180 -------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g 252 (559)
T KOG1334|consen 180 -------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG 252 (559)
T ss_pred -------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccc
Confidence 224677778777888753 35799999999999877654432 223455689999999999998889999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCceEeccCCC---CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCC
Q 010997 344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSA---AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (496)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~---~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 420 (496)
.|+.+.-+|+++.... ..+..-..+.. ....++..|...+.||+++.|-.+++||.+...+...........|.
T Consensus 253 eD~~v~~~Dlr~~~pa---~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~ 329 (559)
T KOG1334|consen 253 EDAVVFHIDLRQDVPA---EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH 329 (559)
T ss_pred cccceeeeeeccCCcc---ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc
Confidence 9999999999983211 11112223333 57889999999989999999999999999886443222111222233
Q ss_pred eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.++. ...-.|++++++.++.-++||.++. .|+++...
T Consensus 330 hl~~---d~~v~ITgl~Ysh~~sElLaSYnDe--------~IYLF~~~ 366 (559)
T KOG1334|consen 330 HLVE---DDPVNITGLVYSHDGSELLASYNDE--------DIYLFNKS 366 (559)
T ss_pred cccc---cCcccceeEEecCCccceeeeeccc--------ceEEeccc
Confidence 3332 2233689999998888899988865 78888554
No 230
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=2.4e-11 Score=108.33 Aligned_cols=196 Identities=15% Similarity=0.210 Sum_probs=139.5
Q ss_pred eeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 143 VNRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
|--+-|+. .++|..+.+. .+++.++... ..+..+.-.+ .|.++.++ .++|+.+-.+ .|
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~------------~~ICe~~fpt--~IL~VrmN--r~RLvV~Lee-~I 108 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK------------TTICEIFFPT--SILAVRMN--RKRLVVCLEE-SI 108 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEcccC------------ceEEEEecCC--ceEEEEEc--cceEEEEEcc-cE
Confidence 44445654 4666555543 4888888766 2333333333 47888885 3567777655 49
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE--c
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV--G 298 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~--~ 298 (496)
.|+|+++.+..... .....+...+.++.+++.+ .+++-- .
T Consensus 109 yIydI~~MklLhTI-------------------------------------~t~~~n~~gl~AlS~n~~n-~ylAyp~s~ 150 (391)
T KOG2110|consen 109 YIYDIKDMKLLHTI-------------------------------------ETTPPNPKGLCALSPNNAN-CYLAYPGST 150 (391)
T ss_pred EEEecccceeehhh-------------------------------------hccCCCccceEeeccCCCC-ceEEecCCC
Confidence 99999865432111 1122344556666666665 455542 3
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc-EEEEeCCCCCCCCCCCCceEeccC--CCCE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGH--SAAV 375 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~i 375 (496)
..|.|.|||..+-+ ....+.+|.+.+-|++|++ +|.+|||+|..|+ ||+|.+.+ +..+.+|+-- ...|
T Consensus 151 t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~~~~I 221 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTYPVSI 221 (391)
T ss_pred CCceEEEEEcccce--eeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCceeeEE
Confidence 46899999998877 5666779999999999999 9999999999995 78999988 8888888643 3468
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~ 406 (496)
.+++|+|++++ |++.+..++|+||.+....
T Consensus 222 ySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSPDSQF-LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence 99999999995 6777788999999998743
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.9e-12 Score=125.02 Aligned_cols=228 Identities=10% Similarity=0.115 Sum_probs=139.3
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
...+.+.+.+.+|+| +++.||..+.+ ..|++||+.++. .. .+....+ .+.+.+|+|||+.|+
T Consensus 191 l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~------------~~-~l~~~~g-~~~~~~~SPDG~~la 255 (427)
T PRK02889 191 ALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGR------------RR-VVANFKG-SNSAPAWSPDGRTLA 255 (427)
T ss_pred eccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCC------------EE-EeecCCC-CccceEECCCCCEEE
Confidence 346778899999999 77777766542 369999998772 11 2222222 346889999998776
Q ss_pred -EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 213 -SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 213 -sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
+.+.+|...||.++... .....+..+........|+|+|.
T Consensus 256 ~~~~~~g~~~Iy~~d~~~---------------------------------------~~~~~lt~~~~~~~~~~wSpDG~ 296 (427)
T PRK02889 256 VALSRDGNSQIYTVNADG---------------------------------------SGLRRLTQSSGIDTEPFFSPDGR 296 (427)
T ss_pred EEEccCCCceEEEEECCC---------------------------------------CCcEECCCCCCCCcCeEEcCCCC
Confidence 56788888888764210 00123333444556778999995
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCCceEe
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
.+++++..+|...||.+......... ...........+|+| ++++|+..+.++ .|.+||+.. +. ...+
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~------g~-~~~l 367 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLAT------GQ-VTAL 367 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCC------CC-eEEc
Confidence 44445445567777766432211111 112223344678999 899888776654 699999986 33 3333
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
... .......|+|+++.|+.+....|.-.++-+...+ .....+..+.+.+...+|+|-
T Consensus 368 t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g--------------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 368 TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG--------------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC--------------CceEEeecCCCCCCCCccCCC
Confidence 322 3346789999999877666555553344332211 112223345567788889873
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=1.3e-12 Score=112.98 Aligned_cols=114 Identities=22% Similarity=0.465 Sum_probs=85.8
Q ss_pred CCCceeEEEEccCCCceEEE-EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---CCcEEEEe
Q 010997 277 HEDTVEDVTFCPSSAQEFCS-VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFD 352 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---dg~i~iwd 352 (496)
..++|.+++|+|++..++++ |..++.|.+||++ .+ .+..+ +...++.|.|+| +|++|++|+. .|.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~--~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GK--KIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-cc--EeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEE
Confidence 34579999999999443333 4467899999997 22 34443 457889999999 8999999874 46799999
Q ss_pred CCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC-----CCcEEEEECCC
Q 010997 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEK 404 (496)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~-----dg~i~iwd~~~ 404 (496)
.++ ...+.++. | ..++.++|+|+|++++.+.+. |+.++||++..
T Consensus 132 ~~~------~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 132 VRK------KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCC------CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 997 56666654 3 347899999999986644443 88899999864
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=9.1e-11 Score=102.69 Aligned_cols=176 Identities=20% Similarity=0.364 Sum_probs=123.7
Q ss_pred cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCC
Q 010997 164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG 243 (496)
Q Consensus 164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 243 (496)
.|.|||=... +++.++.--. +|.++.+.++ .|+..- .+.|.||...+...
T Consensus 76 kviIWDD~k~------------~~i~el~f~~--~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k------------- 125 (346)
T KOG2111|consen 76 KVIIWDDLKE------------RCIIELSFNS--EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK------------- 125 (346)
T ss_pred eEEEEecccC------------cEEEEEEecc--ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-------------
Confidence 7999994333 5555665544 5889999765 455554 67999999864211
Q ss_pred CCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC--CceeEEEEccCCC-ceEEE-EcCCCeEEEEEccCCCccceeee
Q 010997 244 SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE--DTVEDVTFCPSSA-QEFCS-VGDDSCLILWDARVGTSPVIKVE 319 (496)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~-~~l~s-~~~dg~i~iwd~~~~~~~~~~~~ 319 (496)
.++.+.... .... +.+|... .+|+. |-.-|.|+|-|+...........
T Consensus 126 --------------------------~l~~~et~~NPkGlC--~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I 177 (346)
T KOG2111|consen 126 --------------------------LLHVIETRSNPKGLC--SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII 177 (346)
T ss_pred --------------------------heeeeecccCCCceE--eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE
Confidence 111111111 1122 2222221 23332 34568999999988763223556
Q ss_pred ccCCCCeEEEEecCCCCcEEEEEcCCCc-EEEEeCCCCCCCCCCCCceEecc--CCCCEEEEEEcCCCCCEEEEEeCCCc
Q 010997 320 KAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGL 396 (496)
Q Consensus 320 ~~~~~~v~~i~~sp~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~--h~~~i~~l~~sp~~~~llas~~~dg~ 396 (496)
.+|.+.|.|++++- +|.++||+|..|+ |||||..+ +.++.+++- ....|.+++|||+..+ ||++|+-|+
T Consensus 178 ~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~------g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgT 249 (346)
T KOG2111|consen 178 NAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTED------GTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGT 249 (346)
T ss_pred EcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC------CcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCe
Confidence 79999999999999 9999999999996 79999999 888888863 3457999999999995 689999999
Q ss_pred EEEEECCCC
Q 010997 397 LNIWDYEKV 405 (496)
Q Consensus 397 i~iwd~~~~ 405 (496)
|+||.++..
T Consensus 250 lHiF~l~~~ 258 (346)
T KOG2111|consen 250 LHIFSLRDT 258 (346)
T ss_pred EEEEEeecC
Confidence 999999874
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=2e-11 Score=120.67 Aligned_cols=237 Identities=12% Similarity=0.136 Sum_probs=146.7
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC---CcEEEEecCCccccccCCcccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA 239 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D---g~i~iwd~~~~~~~~~~~~~~~ 239 (496)
..|.++|.... . ...+..+.. .+...+|+|+|++|+.++.+ ..|.+||+.++..
T Consensus 170 ~~l~~~d~~g~------------~-~~~l~~~~~-~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--------- 226 (417)
T TIGR02800 170 YELQVADYDGA------------N-PQTITRSRE-PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--------- 226 (417)
T ss_pred ceEEEEcCCCC------------C-CEEeecCCC-ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------
Confidence 36788887543 1 123444444 47889999999988876643 4799999875422
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCcccee
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK 317 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 317 (496)
..+..+...+.+++|+|++..++++.+.++ .|.+||+.++. ..
T Consensus 227 --------------------------------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~ 271 (417)
T TIGR02800 227 --------------------------------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LT 271 (417)
T ss_pred --------------------------------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EE
Confidence 222334455667899999955556666555 58888887765 22
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEcC-CC--cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997 318 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (496)
Q Consensus 318 ~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d 394 (496)
.+..+........|+| ++..|+..+. ++ .|.++|+.. + ....+..+...+..+.|+|++..++ .++.+
T Consensus 272 ~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~------~-~~~~l~~~~~~~~~~~~spdg~~i~-~~~~~ 342 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG------G-EVRRLTFRGGYNASPSWSPDGDLIA-FVHRE 342 (417)
T ss_pred ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC------C-CEEEeecCCCCccCeEECCCCCEEE-EEEcc
Confidence 3334444455779999 8887766544 34 577777765 2 2344554566678899999999765 44444
Q ss_pred C---cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCC
Q 010997 395 G---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 471 (496)
Q Consensus 395 g---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~ 471 (496)
+ .|.+||+... .. ..+ ... .......|+|++..++++...+ ....+.+.+..
T Consensus 343 ~~~~~i~~~d~~~~-~~------------~~l---~~~-~~~~~p~~spdg~~l~~~~~~~-----~~~~l~~~~~~--- 397 (417)
T TIGR02800 343 GGGFNIAVMDLDGG-GE------------RVL---TDT-GLDESPSFAPNGRMILYATTRG-----GRGVLGLVSTD--- 397 (417)
T ss_pred CCceEEEEEeCCCC-Ce------------EEc---cCC-CCCCCceECCCCCEEEEEEeCC-----CcEEEEEEECC---
Confidence 4 6888888762 11 111 111 1234568999998877665543 11356666654
Q ss_pred cCCchHHHHHHHhccceEEEeccC
Q 010997 472 YRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 472 ~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
+.....+..+.+.+...+|+
T Consensus 398 ----g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 398 ----GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ----CceeeECCCCCCCcCCCCCC
Confidence 33334455455667777764
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.7e-11 Score=120.91 Aligned_cols=238 Identities=14% Similarity=0.149 Sum_probs=141.4
Q ss_pred cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CC--cEEEEecCCccccccCCccccc
Q 010997 164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK--SVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg--~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
.|.++|.... .. ..+..+.. .+.+..|+|||++|+..+. ++ .|.+||+.++..
T Consensus 199 ~l~i~d~dG~------------~~-~~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---------- 254 (448)
T PRK04792 199 QLMIADYDGY------------NE-QMLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---------- 254 (448)
T ss_pred EEEEEeCCCC------------Cc-eEeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe----------
Confidence 6677776554 11 12333333 5788999999998876543 33 578888765422
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe--EEEEEccCCCccceee
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKV 318 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~ 318 (496)
..+....+......|+|++..++++.+.+|. |.++|+.++. ...
T Consensus 255 -------------------------------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~ 300 (448)
T PRK04792 255 -------------------------------EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTR 300 (448)
T ss_pred -------------------------------EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEE
Confidence 1111112233467999999655566667775 7777887665 233
Q ss_pred eccCCCCeEEEEecCCCCcEEEEEc-CCCc--EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997 319 EKAHDADLHCVDWNPLDDNLILTGS-ADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (496)
Q Consensus 319 ~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg 395 (496)
+..+.......+|+| ++..|+..+ .++. |.++|+.. +. ...+..........+|+|+|++++.+...++
T Consensus 301 lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~------g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 301 ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLAS------GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 334555667889999 777666544 3444 55666665 33 2333222233446799999998766655555
Q ss_pred cEEE--EECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997 396 LLNI--WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 473 (496)
Q Consensus 396 ~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~ 473 (496)
...| +|+..... ..+ ... .......|+|++..++.+...+ ....+.+++..
T Consensus 373 ~~~I~~~dl~~g~~-------------~~l---t~~-~~d~~ps~spdG~~I~~~~~~~-----g~~~l~~~~~~----- 425 (448)
T PRK04792 373 KFNIARQDLETGAM-------------QVL---TST-RLDESPSVAPNGTMVIYSTTYQ-----GKQVLAAVSID----- 425 (448)
T ss_pred ceEEEEEECCCCCe-------------EEc---cCC-CCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-----
Confidence 4444 56655211 111 111 1123457999999887766543 12346666664
Q ss_pred CchHHHHHHHhccceEEEeccCC
Q 010997 474 PQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 474 ~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.....+..+.+.+...+|+|
T Consensus 426 --G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 --GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --CCceEECcCCCCCcCCCccCC
Confidence 445555666667788889988
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.47 E-value=5e-12 Score=128.34 Aligned_cols=225 Identities=16% Similarity=0.212 Sum_probs=150.6
Q ss_pred CCceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997 186 RPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (496)
..+..+..|.. .|..++.++.. .+|+|||.||+|++|+...-...
T Consensus 1039 ~lVAhL~Ehs~-~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------------------------------- 1084 (1431)
T KOG1240|consen 1039 ILVAHLHEHSS-AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------------------------------- 1084 (1431)
T ss_pred eEeehhhhccc-cccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------------------
Confidence 34455666776 46677777664 89999999999999998753221
Q ss_pred CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-----eeeecc--CCCCeEEEEecCCCCc
Q 010997 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKA--HDADLHCVDWNPLDDN 337 (496)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~--~~~~v~~i~~sp~~~~ 337 (496)
........++......+.++.+.+.+ +.+|.++.||.|++.++....... ...... ...-|..-+|....+.
T Consensus 1085 ~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1085 GGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred cceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc
Confidence 01122234455456788999999888 789999999999999987632111 111111 1223333445443444
Q ss_pred -EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC
Q 010997 338 -LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 416 (496)
Q Consensus 338 -~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~ 416 (496)
.++.+..-+.|..||+++.. ..-..+.....+.|++++.+|.+.+ ++.|...|.+.+||++-. .
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~----~~w~lk~~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~-~--------- 1228 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRH----DAWRLKNQLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFR-V--------- 1228 (1431)
T ss_pred eeEEEEEeccceEEecchhhh----hHHhhhcCccccceeEEEecCCceE-EEEecCCceEEEEEeecC-c---------
Confidence 78889999999999999843 1122233445688999999999996 579999999999999984 1
Q ss_pred CCCCeeEEEecCCCCCcceEEecCCCC--cEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 417 NYPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~--~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+..-. ..++..+|+.+..+|..+ ...++++. +..+.|.+|++..
T Consensus 1229 ---~i~sw-~~P~~~~i~~v~~~~~~~~~S~~vs~~~-----~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1229 ---PILSW-EHPARAPIRHVWLCPTYPQESVSVSAGS-----SSNNEVSTWNMET 1274 (1431)
T ss_pred ---eeecc-cCcccCCcceEEeeccCCCCceEEEecc-----cCCCceeeeeccc
Confidence 11112 234456788888887655 44444322 1458999999984
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=6.5e-12 Score=110.09 Aligned_cols=277 Identities=14% Similarity=0.253 Sum_probs=163.5
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCc
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS 219 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~ 219 (496)
+.|.-+.|..+.-.+|.....++.|.+|++... .-...+..... .+.+++|+|+|+ .|.+...|-.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp------------ew~ckIdeg~a-gls~~~WSPdgrhiL~tseF~lr 115 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP------------EWYCKIDEGQA-GLSSISWSPDGRHILLTSEFDLR 115 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecc------------eeEEEeccCCC-cceeeeECCCcceEeeeecceeE
Confidence 446667787745556667778999999999876 22233433344 478999999997 5557778999
Q ss_pred EEEEecCCccccccCCccccc---cCCCCCceeccCCCCCC-CCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 220 VVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGD-GNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
|.+|.+.+........++... ....+............ ..+.+........+..+.-.+-..+++.|+|+| +.
T Consensus 116 iTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~-- 192 (447)
T KOG4497|consen 116 ITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NW-- 192 (447)
T ss_pred EEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cE--
Confidence 999999886554433332211 00000000000000000 001111112223334444455667889999998 44
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC----------------
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN---------------- 359 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~---------------- 359 (496)
+.+||.--.- .+. .....-.+..++|+| .+++|++|+.|+.+|+.+--+-+..
T Consensus 193 -------laVwd~~Ley--kv~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~ 261 (447)
T KOG4497|consen 193 -------LAVWDNVLEY--KVY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL 261 (447)
T ss_pred -------EEEecchhhh--eee-eeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence 4456643222 111 123346788999999 9999999999999988652210000
Q ss_pred -------------------------C-------------CCCCceEec------cCCCCEEEEEEcCCCCCEEEEEeC--
Q 010997 360 -------------------------G-------------VGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAE-- 393 (496)
Q Consensus 360 -------------------------~-------------~~~~~~~~~------~h~~~i~~l~~sp~~~~llas~~~-- 393 (496)
. ....++.++ .....+..++|++|..+ +|+-.+
T Consensus 262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y-~aTrnd~~ 340 (447)
T KOG4497|consen 262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY-AATRNDKY 340 (447)
T ss_pred hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE-EeeecCCC
Confidence 0 000111111 12345778999999875 455543
Q ss_pred CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 394 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
-+.+-+||++.. .++..--...+|..+.|+|..+.+++..+. ..+++|.++.
T Consensus 341 PnalW~Wdlq~l----------------~l~avLiQk~piraf~WdP~~prL~vctg~--------srLY~W~psg 392 (447)
T KOG4497|consen 341 PNALWLWDLQNL----------------KLHAVLIQKHPIRAFEWDPGRPRLVVCTGK--------SRLYFWAPSG 392 (447)
T ss_pred CceEEEEechhh----------------hhhhhhhhccceeEEEeCCCCceEEEEcCC--------ceEEEEcCCC
Confidence 256899999874 122222345689999999998888765332 5699999873
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=7.2e-11 Score=103.30 Aligned_cols=167 Identities=12% Similarity=0.256 Sum_probs=117.5
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-CcceeeeecCCCCce
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYV 211 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-~~v~~l~~~p~~~~l 211 (496)
.+..+...++|.++.+.+ +.|++.- .+.|+||...... +.+..+..-.. ....+++-+.+..+|
T Consensus 87 ~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~-----------k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNP-----------KLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred EEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCCh-----------hheeeeecccCCCceEeecCCCCceEE
Confidence 345566778999999976 3455554 4589999998663 22222322221 012222222223344
Q ss_pred EE-ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 212 LS-GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 212 ~s-g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
|. |-.-|.|.|-|+..... .+...+..|...|.|++.+.+|
T Consensus 152 afPg~k~GqvQi~dL~~~~~--------------------------------------~~p~~I~AH~s~Iacv~Ln~~G 193 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKP--------------------------------------NAPSIINAHDSDIACVALNLQG 193 (346)
T ss_pred EcCCCccceEEEEEhhhcCc--------------------------------------CCceEEEcccCceeEEEEcCCc
Confidence 43 44568999999874321 1226788999999999999999
Q ss_pred CceEEEEcCCCe-EEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 291 AQEFCSVGDDSC-LILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 291 ~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
.++||+|..|+ |+|||.+++. .+..+. .....|.||+||| +..+||++|..|+|+||.++..
T Consensus 194 -t~vATaStkGTLIRIFdt~~g~--~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 194 -TLVATASTKGTLIRIFDTEDGT--LLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -cEEEEeccCcEEEEEEEcCCCc--EeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence 89999999997 7899999998 343333 2456899999999 9999999999999999998863
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=4.9e-12 Score=111.56 Aligned_cols=216 Identities=16% Similarity=0.300 Sum_probs=147.6
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
.+..||.+.|+.....| ...-+.+.+.|.+++||--.... +.-+...... ..+++++.+.++...|+.
T Consensus 18 ~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~---------q~wpsI~~~m--P~~~~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSG---------QYWPSIYHYM--PSPCSAMEYVSESRRLYV 85 (404)
T ss_pred hhhcCchhhhhhheecc-CCCCeEEccccceeeeEEecccc---------ccCchhhhhC--CCCceEeeeeccceEEEE
Confidence 45568999999998888 44568899999999999654331 1111111112 225789999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|-..|++.-+.+...-. .....+.+..|...|..+-|+-.. ..
T Consensus 86 g~~ngtvtefs~sedfn------------------------------------km~~~r~~~~h~~~v~~~if~~~~-e~ 128 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDFN------------------------------------KMTFLKDYLAHQARVSAIVFSLTH-EW 128 (404)
T ss_pred EEecceEEEEEhhhhhh------------------------------------hcchhhhhhhhhcceeeEEecCCc-ee
Confidence 99999999887753211 111112222333333333333222 12
Q ss_pred EE---------------------------------------EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC
Q 010997 294 FC---------------------------------------SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334 (496)
Q Consensus 294 l~---------------------------------------s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~ 334 (496)
++ .|...|.|.+-.+.....+.+..+.+|...+.+++|.|
T Consensus 129 V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~- 207 (404)
T KOG1409|consen 129 VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP- 207 (404)
T ss_pred EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-
Confidence 22 23333444444443334456777889999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
...+|.+|..|..|.+||+--.. .....+.+|...|..++.-+.-..+ .+++.||.|.+||++..
T Consensus 208 ~~~~LfSg~~d~~vi~wdigg~~-----g~~~el~gh~~kV~~l~~~~~t~~l-~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 208 GQRLLFSGASDHSVIMWDIGGRK-----GTAYELQGHNDKVQALSYAQHTRQL-ISCGEDGGIVVWNMNVK 272 (404)
T ss_pred CCcEEEeccccCceEEEeccCCc-----ceeeeeccchhhhhhhhhhhhheee-eeccCCCeEEEEeccce
Confidence 89999999999999999998632 4466778899999999888877754 59999999999999763
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.46 E-value=5.9e-12 Score=108.76 Aligned_cols=236 Identities=15% Similarity=0.123 Sum_probs=156.8
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC---CCC-ceEEecCCCcEEEEecCCccccccCCcc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEP-YVLSGGKDKSVVLWSIQDHITSSATDPA 237 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p---~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~ 237 (496)
.|.+.+|++...... +.-+++.-....++.+.|.. +|. .|+-+..+|.|.++............+
T Consensus 45 ~Gkl~Lys~~d~~~~----------~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~- 113 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLS----------PLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG- 113 (339)
T ss_pred ccceEEEeecccccC----------ccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc-
Confidence 467888888776322 12222222222467888864 244 566677789999987654322111111
Q ss_pred ccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee
Q 010997 238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK 317 (496)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 317 (496)
+....-......++.|++.+ ..++++-.+|.+.+-+..........
T Consensus 114 ---------------------------------ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq 159 (339)
T KOG0280|consen 114 ---------------------------------LSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQ 159 (339)
T ss_pred ---------------------------------cchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecc
Confidence 00000011135678888888 66888888899986665554422334
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 010997 318 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGL 396 (496)
Q Consensus 318 ~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~~l~~sp~~~~llas~~~dg~ 396 (496)
..++|.-.+....|+..+.+++.+|+.|+.+..||+|.+. ..+. ..+.|...|.++.-+|..++.+++|+.|-.
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-----~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-----TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-----ceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 6789999999999998788999999999999999999532 3333 356799999999999987778899999999
Q ss_pred EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC-cEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 397 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
|++||.+..+++... ..-.+.|+.+.++|... .++++|-. +-.+|-+.++.
T Consensus 235 i~~~DtRnm~kPl~~---------------~~v~GGVWRi~~~p~~~~~lL~~CMh--------~G~ki~~~~~~ 286 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFK---------------AKVGGGVWRIKHHPEIFHRLLAACMH--------NGAKILDSSDK 286 (339)
T ss_pred eeeeehhcccCcccc---------------CccccceEEEEecchhhhHHHHHHHh--------cCceEEEeccc
Confidence 999999987654421 11236899999998654 23443333 34666666643
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.9e-11 Score=119.68 Aligned_cols=238 Identities=11% Similarity=0.093 Sum_probs=143.3
Q ss_pred cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC---CcEEEEecCCccccccCCccccc
Q 010997 164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D---g~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
.|.++|.... .+ ..+..+.. .+....|+|+|++|+..+.+ ..|.+||+.++..
T Consensus 180 ~l~~~d~~g~------------~~-~~l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---------- 235 (430)
T PRK00178 180 TLQRSDYDGA------------RA-VTLLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---------- 235 (430)
T ss_pred EEEEECCCCC------------Cc-eEEecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE----------
Confidence 4777787654 22 23334444 57889999999988766533 3688889875432
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCccceee
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKV 318 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~ 318 (496)
..+....+.+....|+|+|..++++.+.+| .|.+||+.++. ...
T Consensus 236 -------------------------------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~ 281 (430)
T PRK00178 236 -------------------------------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSR 281 (430)
T ss_pred -------------------------------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEE
Confidence 111122233456899999955555665555 58888988766 223
Q ss_pred eccCCCCeEEEEecCCCCcEEEEEc-CCC--cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997 319 EKAHDADLHCVDWNPLDDNLILTGS-ADN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (496)
Q Consensus 319 ~~~~~~~v~~i~~sp~~~~~l~sgs-~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg 395 (496)
+..+........|+| ++..|+..+ .+| .|.++|+.. +. ...+...........|+|++..++.+...++
T Consensus 282 lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~------g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 282 VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNG------GR-AERVTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence 334555566789999 777665544 344 466677765 33 2222222233446789999998765554444
Q ss_pred --cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997 396 --LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 473 (496)
Q Consensus 396 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~ 473 (496)
.|.+||+..... ..+. . ........|+|+|..++.+..++ ....|.++++.
T Consensus 354 ~~~l~~~dl~tg~~-------------~~lt-~---~~~~~~p~~spdg~~i~~~~~~~-----g~~~l~~~~~~----- 406 (430)
T PRK00178 354 NFHVAAQDLQRGSV-------------RILT-D---TSLDESPSVAPNGTMLIYATRQQ-----GRGVLMLVSIN----- 406 (430)
T ss_pred ceEEEEEECCCCCE-------------EEcc-C---CCCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-----
Confidence 477888876311 1111 1 11223568999998877765432 12456666665
Q ss_pred CchHHHHHHHhccceEEEeccCC
Q 010997 474 PQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 474 ~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.....+..+.+.+...+|+|
T Consensus 407 --g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 --GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred --CCceEECcCCCCCcCCCccCC
Confidence 233334555566778888887
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=9.3e-10 Score=105.13 Aligned_cols=306 Identities=12% Similarity=0.173 Sum_probs=182.0
Q ss_pred EEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeC----
Q 010997 86 RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD---- 161 (496)
Q Consensus 86 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~---- 161 (496)
.+|+|+.+. .....|++++++.. ...+.......-......++++| ++++|.+...
T Consensus 1 ~~~vgsy~~-~~~~gI~~~~~d~~------------------~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~ 60 (345)
T PF10282_consen 1 TLYVGSYTN-GKGGGIYVFRFDEE------------------TGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGD 60 (345)
T ss_dssp EEEEEECCS-SSSTEEEEEEEETT------------------TTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSST
T ss_pred CEEEEcCCC-CCCCcEEEEEEcCC------------------CCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccC
Confidence 478888877 35577877765321 11233334344555677788999 6667766655
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CCCcEEEEecCCc-cccccCCcccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDH-ITSSATDPATA 239 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~Dg~i~iwd~~~~-~~~~~~~~~~~ 239 (496)
+|.|..|.+...... ...+........ ....++++|++++|+++. .+|+|.++++... ...........
T Consensus 61 ~g~v~~~~i~~~~g~--------L~~~~~~~~~g~-~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 61 SGGVSSYRIDPDTGT--------LTLLNSVPSGGS-SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp TTEEEEEEEETTTTE--------EEEEEEEEESSS-CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred CCCEEEEEECCCcce--------eEEeeeeccCCC-CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 579999998765111 011222221122 235799999999888775 5899999999753 11100000000
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccce---
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--- 316 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--- 316 (496)
...+ . ..-........++.|+|++..++++.-....|.+|++......+.
T Consensus 132 ~g~g------------------------~---~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 132 EGSG------------------------P---NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp EEEE------------------------S---STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred CCCC------------------------C---cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 0000 0 000011234678899999955566655667899999977652111
Q ss_pred eeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCCCceEecc----C--CCCEEEEEEcCCCCCEEE
Q 010997 317 KVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEG----H--SAAVLCVQWSPDKSSVFG 389 (496)
Q Consensus 317 ~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----h--~~~i~~l~~sp~~~~lla 389 (496)
............++|+| ++.++ ++.-.++.|.++++..... ....+..+.. . ......|+++|+|++|++
T Consensus 185 ~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred ccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 11224567789999999 76655 5566688999999883210 0112222211 1 226789999999999998
Q ss_pred EEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 390 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 390 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+....+.|.+|++..... ....+............++++|++.+++++...+ +.|.+|++.
T Consensus 262 snr~~~sI~vf~~d~~~g-----------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-------~~v~vf~~d 322 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATG-----------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-------NTVSVFDID 322 (345)
T ss_dssp EECTTTEEEEEEECTTTT-----------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-------TEEEEEEEE
T ss_pred EeccCCEEEEEEEecCCC-----------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-------CeEEEEEEe
Confidence 888899999999954211 1123333332234478999999999998876655 899999985
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.42 E-value=4.9e-11 Score=113.71 Aligned_cols=266 Identities=14% Similarity=0.175 Sum_probs=157.8
Q ss_pred ceEEEecCCCceeE-EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 132 KKHKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 132 ~~~~~~~h~~~V~~-l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
+.+..+...+.+.. +.|+| +++++++++.||.|.++|+.+. +.+..+..-.. ..+++++++|++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~------------~~v~~i~~G~~--~~~i~~s~DG~~ 91 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATG------------KVVATIKVGGN--PRGIAVSPDGKY 91 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSS------------SEEEEEE-SSE--EEEEEE--TTTE
T ss_pred eEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcc------------cEEEEEecCCC--cceEEEcCCCCE
Confidence 44555655555543 56788 8888888899999999999988 55556655443 479999999998
Q ss_pred eEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 211 VLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 211 l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
++++. ..+.+.++|.++.+......... .........+..+..+|.
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~---------------------------------~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGG---------------------------------MPVDGPESRVAAIVASPG 138 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--E---------------------------------E-TTTS---EEEEEE-SS
T ss_pred EEEEecCCCceeEeccccccceeeccccc---------------------------------ccccccCCCceeEEecCC
Confidence 88664 68999999987643321111000 000013456778888888
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCCCC---------
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSN--------- 359 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~dg~i~iwd~~~~~~~--------- 359 (496)
.+.++++.-+.+.|-+.|...... ................|+| +++++++ ...+..|.++|..+....
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p 216 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPKN-LKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP 216 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSSC-EEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred CCEEEEEEccCCeEEEEEeccccc-cceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence 855666666678999989877653 2323334556778899999 7877655 455667878876652100
Q ss_pred ----------------------------------------CCCCCceEeccCCCCEEEEEEcCCCCCEEEE---EeCCCc
Q 010997 360 ----------------------------------------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGL 396 (496)
Q Consensus 360 ----------------------------------------~~~~~~~~~~~h~~~i~~l~~sp~~~~llas---~~~dg~ 396 (496)
...+.+.++.....+ .-+..+|+++++.+. +...+.
T Consensus 217 ~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 217 HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADT 295 (369)
T ss_dssp EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-
T ss_pred cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCce
Confidence 001222223333333 567789999988765 455689
Q ss_pred EEEEECCCCCcccCCCCCCCCCCCeeEEEec-CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 397 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|.++|..+. +....+. +-...+..+.|+++|..+.+|.-+. ++.|.|||...
T Consensus 296 v~viD~~tl---------------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~------~~~i~v~D~~T 348 (369)
T PF02239_consen 296 VQVIDKKTL---------------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG------NGAIVVYDAKT 348 (369)
T ss_dssp EEEEECCGT---------------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--------TTEEEEEETTT
T ss_pred EEEEECcCc---------------ceeEEEeccCCCcEeccEECCCCCEEEEEEecC------CCEEEEEECCC
Confidence 999999884 3333332 1123488999999999999987665 45999999983
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.9e-09 Score=96.70 Aligned_cols=296 Identities=13% Similarity=0.194 Sum_probs=186.8
Q ss_pred eEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeC--
Q 010997 84 RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD-- 161 (496)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~-- 161 (496)
.+.+|+||.|.+. ..-|++|+++-.. ..+...++..+.+.++-|+++| +.+.|.++..
T Consensus 2 ~~~~YiGtyT~~~-s~gI~v~~ld~~~------------------g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~ 61 (346)
T COG2706 2 KQTVYIGTYTKRE-SQGIYVFNLDTKT------------------GELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPG 61 (346)
T ss_pred ceEEEEeeecccC-CCceEEEEEeCcc------------------cccchhhhccccCCCceEEECC-CCCEEEEEEecC
Confidence 3689999988664 4456777664211 1233445667888899999999 7777777655
Q ss_pred -CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CCcEEEEecCCccccccCCcccc
Q 010997 162 -SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSIQDHITSSATDPATA 239 (496)
Q Consensus 162 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg~i~iwd~~~~~~~~~~~~~~~ 239 (496)
+|.|-.|.++......... -...+.++ +-.-+++++++++|+++.. -|.|.++-++..-....
T Consensus 62 ~~ggvaay~iD~~~G~Lt~l------n~~~~~g~---~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~------ 126 (346)
T COG2706 62 EEGGVAAYRIDPDDGRLTFL------NRQTLPGS---PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP------ 126 (346)
T ss_pred CcCcEEEEEEcCCCCeEEEe------eccccCCC---CCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc------
Confidence 4678777776531111100 00112222 2267899999999888764 58999998865211100
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC----------ceeEEEEccCCCceEEEEc-CCCeEEEEEc
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED----------TVEDVTFCPSSAQEFCSVG-DDSCLILWDA 308 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~ 308 (496)
......|.+ .+-...+.|++ ++++++. .--.|.+|++
T Consensus 127 -------------------------------~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 127 -------------------------------VVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred -------------------------------ceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEc
Confidence 000111111 26677899999 5555553 3457999999
Q ss_pred cCCCcccee-eeccCCCCeEEEEecCCCCcEEEEE-cCCCcEEEEeCCCCCCCCCCCCceEecc---------CCCCEEE
Q 010997 309 RVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEG---------HSAAVLC 377 (496)
Q Consensus 309 ~~~~~~~~~-~~~~~~~~v~~i~~sp~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~~~~~~~---------h~~~i~~ 377 (496)
..+...... ....-......|.|+| ++.+.... -.+++|.+|...... ..+..++. -......
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~-----g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAV-----GKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCC-----ceEEEeeeeccCccccCCCCceeE
Confidence 876522111 1113456788999999 88776554 458999999988732 22222221 1345678
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
|..+|+|++|.|+--....|.+|.+...+.. ..++.....+...-.++.+++.+.+|+|+.-+.
T Consensus 249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~-----------L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s----- 312 (346)
T COG2706 249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----------LELVGITPTEGQFPRDFNINPSGRFLIAANQKS----- 312 (346)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------EEEEEEeccCCcCCccceeCCCCCEEEEEccCC-----
Confidence 9999999987766555668999988764221 133444444555578999999888777655443
Q ss_pred CCCeEEEeecCCC
Q 010997 458 GGGTLQIWRMSDL 470 (496)
Q Consensus 458 ~Dg~i~iw~~~~~ 470 (496)
..|.+|.+...
T Consensus 313 --d~i~vf~~d~~ 323 (346)
T COG2706 313 --DNITVFERDKE 323 (346)
T ss_pred --CcEEEEEEcCC
Confidence 67999999853
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.6e-11 Score=113.63 Aligned_cols=196 Identities=19% Similarity=0.274 Sum_probs=150.7
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec--------------------CCCC
Q 010997 150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--------------------PTEP 209 (496)
Q Consensus 150 p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~--------------------p~~~ 209 (496)
|....++|....||.++|||..++.....+ .|...+.+ ..++..|. .+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~------~p~~~~s~----t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEF------APIASLSG----TCTYTKWGLSADYSPMKWLSLEKAKKASLDTS 71 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeee------ccchhccC----cceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence 336779999999999999999987433221 22222222 12233331 1223
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
.|+-|...|.|.++++..+..... ..-..|.+.|+++.++.+
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~--------------------------------------~st~~h~~~v~~~~~~~~ 113 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAK--------------------------------------LSTDKHYGNVNEILDAQR 113 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEE--------------------------------------EecCCCCCcceeeecccc
Confidence 567777888888888875543211 111368999999999887
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
- ..|.+++.|+.+..|+..... .+.........+.+++.+| ++..+++|+ +.|++||+.+ .+.+.+|.
T Consensus 114 ~-~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~------kevv~~ft 181 (541)
T KOG4547|consen 114 L-GCIYSVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIET------KEVVITFT 181 (541)
T ss_pred c-CceEecCCceeEEEEecccce--eeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccC------ceEEEEec
Confidence 7 689999999999999998887 6777778888999999999 899999886 6799999999 88999999
Q ss_pred cCCCCEEEEEEcCC-----CCCEEEEEeCCCcEEEEECCCC
Q 010997 370 GHSAAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 370 ~h~~~i~~l~~sp~-----~~~llas~~~dg~i~iwd~~~~ 405 (496)
+|.++|.+++|--+ |.++|.++..+..+.+|-+...
T Consensus 182 gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 182 GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99999999999887 7888888888888999988764
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=3e-10 Score=112.21 Aligned_cols=201 Identities=12% Similarity=0.156 Sum_probs=126.7
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
....+.+.+...+|+| +++.||.++.. ..|++||+.++. . ..+..+.. .+.+++|+|+++.|
T Consensus 184 ~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~------------~-~~~~~~~~-~~~~~~~spDg~~l 248 (417)
T TIGR02800 184 TITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQ------------R-EKVASFPG-MNGAPAFSPDGSKL 248 (417)
T ss_pred EeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCC------------E-EEeecCCC-CccceEECCCCCEE
Confidence 3445677789999999 77777776543 479999998762 1 12233333 45678999999866
Q ss_pred E-EecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 212 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 212 ~-sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
+ +.+.++ .|.+||+.++.. ..+..+........|+|
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~s~ 287 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQL-----------------------------------------TRLTNGPGIDTEPSWSP 287 (417)
T ss_pred EEEECCCCCccEEEEECCCCCE-----------------------------------------EECCCCCCCCCCEEECC
Confidence 5 455554 588888765322 12222333345668999
Q ss_pred CCCceEEEEcCCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCC
Q 010997 289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~ 363 (496)
++..++++...++ .|.++|+.++. ...+..+...+..+.|+| ++.+++.++.++ .|.+||+.+ +.
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~------~~ 357 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDG------GG 357 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCC------CC
Confidence 9844444444444 57777776655 223334556677889999 888888887775 788999876 22
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE 403 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~ 403 (496)
...+... .......|+|++..|+++...++. +.+.+..
T Consensus 358 -~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 358 -ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred -eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 2333222 233456899999977655554443 4444443
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=6.2e-12 Score=110.88 Aligned_cols=236 Identities=17% Similarity=0.274 Sum_probs=155.4
Q ss_pred ccceEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccc-------------------cCCC----CCC
Q 010997 130 FVKKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHA-------------------VLGA----TNS 185 (496)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~-------------------~~~~----~~~ 185 (496)
.+..++.+.-...|+.++|.++ +...+...+.|.+|++|.+........ +.+. ...
T Consensus 74 EFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea 153 (433)
T KOG1354|consen 74 EFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA 153 (433)
T ss_pred ccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee
Confidence 3344445556677999999884 445666778899999999876533321 0000 001
Q ss_pred CCceEE-ecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997 186 RPDLIL-TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (496)
Q Consensus 186 ~~~~~l-~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (496)
.|...+ .+|+- -|.++.++.|...++|+. |=.|.+|+++-...... +.+
T Consensus 154 ~prRv~aNaHty-hiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFn----------------------------IVD 203 (433)
T KOG1354|consen 154 SPRRVYANAHTY-HINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFN----------------------------IVD 203 (433)
T ss_pred eeeeecccccee-EeeeeeecCccceEeecc-ceeeeeccccccCCcee----------------------------EEE
Confidence 122222 24554 588999999998888876 88999999873211000 000
Q ss_pred CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc-------------cc-eeeeccCCCCeEEEE
Q 010997 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-------------PV-IKVEKAHDADLHCVD 330 (496)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~-~~~~~~~~~~v~~i~ 330 (496)
. +| ..+..-..-|++..|||...++|+-.+..|+|++-|+|.... |. ...+..--..|..+.
T Consensus 204 I---KP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvK 279 (433)
T KOG1354|consen 204 I---KP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVK 279 (433)
T ss_pred c---cc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceE
Confidence 0 00 112223456889999999888999999999999999995431 00 001112235688999
Q ss_pred ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC------------CC---EEEEEEcCCCCCEEEEEeCCC
Q 010997 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS------------AA---VLCVQWSPDKSSVFGSSAEDG 395 (496)
Q Consensus 331 ~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------------~~---i~~l~~sp~~~~llas~~~dg 395 (496)
|++ +|+|+++-+. -+|++||+... .+++.++..|. .. -..++|+.++.++ +||+...
T Consensus 280 Fs~-sGryilsRDy-ltvk~wD~nme-----~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v-~TGsy~n 351 (433)
T KOG1354|consen 280 FSH-SGRYILSRDY-LTVKLWDLNME-----AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV-MTGSYNN 351 (433)
T ss_pred Ecc-CCcEEEEecc-ceeEEEecccc-----CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE-ecccccc
Confidence 999 8999987643 58999999653 46777776663 22 2568999998865 5999999
Q ss_pred cEEEEECCCCCc
Q 010997 396 LLNIWDYEKVGK 407 (496)
Q Consensus 396 ~i~iwd~~~~~~ 407 (496)
..++|++..+..
T Consensus 352 ~frvf~~~~gsk 363 (433)
T KOG1354|consen 352 VFRVFNLARGSK 363 (433)
T ss_pred eEEEecCCCCcc
Confidence 999999766443
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.5e-11 Score=114.72 Aligned_cols=211 Identities=11% Similarity=0.138 Sum_probs=150.0
Q ss_pred CCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997 206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (496)
Q Consensus 206 p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (496)
|-..|+|....||.+|+|+...++....+.+.... .+..... .|. ...........++.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~--s~t~~~~------------~w~-------L~~~~s~~k~~~~~ 61 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL--SGTCTYT------------KWG-------LSADYSPMKWLSLE 61 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhc--cCcceeE------------EEE-------EEeccchHHHHhHH
Confidence 34568999999999999999887665444331100 0000000 000 00000000111111
Q ss_pred Ec---cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC
Q 010997 286 FC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 362 (496)
Q Consensus 286 ~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 362 (496)
+- ..+..+++-|...|.|.+|++..++......-..|.+.|+++.++. +-..|.+++.|+.+..|+... .
T Consensus 62 ~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~------~ 134 (541)
T KOG4547|consen 62 KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE------K 134 (541)
T ss_pred HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc------c
Confidence 10 1122578889999999999999888332333357999999999998 788999999999999999998 7
Q ss_pred CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC-
Q 010997 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS- 441 (496)
Q Consensus 363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~- 441 (496)
..++.+..-...+.+++.+||+. ++++++ +.|++||+.+. +.+..+.||.++|..++|-..
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k---------------evv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK---------------EVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc---------------eEEEEecCCCcceEEEEEEEec
Confidence 78888888889999999999988 566775 68999999985 788889999999999999876
Q ss_pred ----CCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 442 ----DPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 442 ----~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|.+++.+... +.-+.+|-+..
T Consensus 197 ~g~~G~~vLssa~~-------~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAA-------ERGITVWVVEK 221 (541)
T ss_pred cccccceeeecccc-------ccceeEEEEEc
Confidence 6777765443 37788888763
No 249
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.39 E-value=1.9e-12 Score=113.38 Aligned_cols=224 Identities=12% Similarity=0.172 Sum_probs=148.9
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-EecCCCcEEEEe
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWS 224 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~~Dg~i~iwd 224 (496)
..|+| +++++|+++.- .+.|-|..+.+ ....+.-- + .|.-+.|..+.-+++ ....|+.|.+|+
T Consensus 14 c~fSp-~g~yiAs~~~y-rlviRd~~tlq------------~~qlf~cl-d-ki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 14 CSFSP-CGNYIASLSRY-RLVIRDSETLQ------------LHQLFLCL-D-KIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred eeECC-CCCeeeeeeee-EEEEeccchhh------------HHHHHHHH-H-HhhheeeeccceeeeeeeeccceEEEEE
Confidence 46899 99999999876 88888887762 22222221 2 366788988877655 456788999999
Q ss_pred cCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEE
Q 010997 225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI 304 (496)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 304 (496)
+....- ...+.....++..++|+|+|..++.+..-+-.|.
T Consensus 78 l~Qpew----------------------------------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriT 117 (447)
T KOG4497|consen 78 LVQPEW----------------------------------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT 117 (447)
T ss_pred eeccee----------------------------------------EEEeccCCCcceeeeECCCcceEeeeecceeEEE
Confidence 975432 1345556678999999999988888999999999
Q ss_pred EEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997 305 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (496)
Q Consensus 305 iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~ 384 (496)
+|.+.+.. .. ...--...+..++|+| ++++.+..+.-...-.+.+..-. ....+..+...+-..+.+.|+|||
T Consensus 118 VWSL~t~~--~~-~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~---~W~ll~~f~~dT~DltgieWsPdg 190 (447)
T KOG4497|consen 118 VWSLNTQK--GY-LLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCK---AWILLKEFKLDTIDLTGIEWSPDG 190 (447)
T ss_pred EEEeccce--eE-EecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhH---HHHHHHhcCCCcccccCceECCCC
Confidence 99998876 22 2222334568899999 99999888765332222222100 034555666666678899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEE
Q 010997 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 464 (496)
Q Consensus 385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~i 464 (496)
.. || |||.--.- .... ..-.-.+..++|+|.+.++ + .|+.|+.+||
T Consensus 191 ~~-la---------Vwd~~Ley--------------kv~a--Ye~~lG~k~v~wsP~~qfl-a-------vGsyD~~lrv 236 (447)
T KOG4497|consen 191 NW-LA---------VWDNVLEY--------------KVYA--YERGLGLKFVEWSPCNQFL-A-------VGSYDQMLRV 236 (447)
T ss_pred cE-EE---------Eecchhhh--------------eeee--eeeccceeEEEeccccceE-E-------eeccchhhhh
Confidence 85 33 45432210 0010 1112368889999977654 4 5566688887
Q ss_pred ee
Q 010997 465 WR 466 (496)
Q Consensus 465 w~ 466 (496)
-+
T Consensus 237 ln 238 (447)
T KOG4497|consen 237 LN 238 (447)
T ss_pred hc
Confidence 43
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.2e-10 Score=112.16 Aligned_cols=187 Identities=11% Similarity=0.082 Sum_probs=108.2
Q ss_pred CCceeEEEEccCCCceEEEEcCCC----eEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEE
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMF 351 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iw 351 (496)
.+.....+|+|+|..++++...+| .+.+|++..+. .................+|+| ++..|+..+ .+|...||
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEE
Confidence 344456799999955444443333 45557776532 112222222223446789999 888776654 56766666
Q ss_pred eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (496)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 429 (496)
.+..... +.....+..+...+....|||+|+.|+.++..+ ..|.+||+..... .. +...
T Consensus 309 ~~~~~~~---g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-------------~~---Lt~~ 369 (428)
T PRK01029 309 IMQIDPE---GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-------------YQ---LTTS 369 (428)
T ss_pred EEECccc---ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-------------EE---ccCC
Confidence 4432100 123444555556678899999999765555443 3689999877411 11 1222
Q ss_pred CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 430 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 430 ~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
...+....|+|++..++.+.... ....|.+|++.. ++. ..+....+.+...+|+|
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~-----g~~~L~~vdl~~------g~~-~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNS-----NESELYLISLIT------KKT-RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred CCCccceEECCCCCEEEEEECCC-----CCceEEEEECCC------CCE-EEeecCCCcccCceecC
Confidence 23467789999998887665432 246788889873 221 22222344566677776
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=4.2e-12 Score=133.15 Aligned_cols=193 Identities=16% Similarity=0.298 Sum_probs=150.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
..|-..|.|+.-+|.+ .+.+||+.||.|++|....+ ..+..++.-....|+.+.|+.+|+.+..+..
T Consensus 2205 k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~------------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHG------------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred ecccCceeeecCCCCC-ceEEecCCCceEEEEeccCC------------CeEEEeeccCcchhhhhhhcccCCceeeecc
Confidence 3455678888888844 46679999999999999877 4444554333346899999999999999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
||.+.+|.+.. .+......|.....++.|-. ..+++
T Consensus 2272 dg~l~l~q~~p-----------------------------------------k~~~s~qchnk~~~Df~Fi~---s~~~t 2307 (2439)
T KOG1064|consen 2272 DGDLSLWQASP-----------------------------------------KPYTSWQCHNKALSDFRFIG---SLLAT 2307 (2439)
T ss_pred CCceeecccCC-----------------------------------------cceeccccCCccccceeeee---hhhhc
Confidence 99999998762 22345567888888888875 34666
Q ss_pred E---cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 297 V---GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 297 ~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
+ ++++.+.+||.-...... .....|...++++++-| ..++|++|+.+|.|++||++. .+.++.+..
T Consensus 2308 ag~s~d~~n~~lwDtl~~~~~s-~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq------rql~h~~~~--- 2376 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMNS-LVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA--- 2376 (2439)
T ss_pred cccCCCCCcccchhcccCcccc-eeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHH------HHHHHHhhh---
Confidence 5 467899999976544222 22268999999999999 899999999999999999998 677777764
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+. ... .|++|+..|.|+||++...
T Consensus 2377 ------~~-~~~-~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 ------LD-TRE-YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ------hh-hhh-eeeccCcccceEEEEcccc
Confidence 44 334 5679999999999999885
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.3e-11 Score=114.27 Aligned_cols=210 Identities=12% Similarity=0.226 Sum_probs=149.0
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEE
Q 010997 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 223 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iw 223 (496)
..++++..+-.++..|+. ..|+-++++.+ +.+..+....+ +++++..++...+|++|+.||.|..|
T Consensus 137 RDm~y~~~scDly~~gsg-~evYRlNLEqG------------rfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSG-SEVYRLNLEQG------------RFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred ccccccCCCccEEEeecC-cceEEEEcccc------------ccccccccccc-cceeeeecCccceEEecccCceEEEe
Confidence 455666545555555544 48999999988 44555555544 68999999999999999999999999
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeE
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 303 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 303 (496)
|.+............. -...........|+++.|+.+| -.+++|..+|.|
T Consensus 203 DpR~ksrv~~l~~~~~-----------------------------v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v 252 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASS-----------------------------VNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSV 252 (703)
T ss_pred cchhhhhheeeecccc-----------------------------cCCCccccccCcceEEEecCCc-eeEEeeccCCcE
Confidence 9986533221111000 0001111223459999999887 789999999999
Q ss_pred EEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC
Q 010997 304 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383 (496)
Q Consensus 304 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 383 (496)
.|||+|+.+ |....-....-+|..+.|.+.+++--+.......++|||-.+ +++...+.. ...+..+++-|+
T Consensus 253 ~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~------Gk~~asiEp-t~~lND~C~~p~ 324 (703)
T KOG2321|consen 253 LIYDLRASK-PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT------GKPMASIEP-TSDLNDFCFVPG 324 (703)
T ss_pred EEEEcccCC-ceeecccCCccceeeecccccCCCceEEecchHHhhhccccc------CCceeeccc-cCCcCceeeecC
Confidence 999999987 344444455678999999884333333334567899999998 788887774 455999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC
Q 010997 384 KSSVFGSSAEDGLLNIWDYEKVG 406 (496)
Q Consensus 384 ~~~llas~~~dg~i~iwd~~~~~ 406 (496)
+.. |.++-.++.+..|=+...+
T Consensus 325 sGm-~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 325 SGM-FFTANESSKMHTYYIPSLG 346 (703)
T ss_pred Cce-EEEecCCCcceeEEccccC
Confidence 884 5589888888888877653
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.9e-10 Score=106.90 Aligned_cols=121 Identities=16% Similarity=0.375 Sum_probs=85.8
Q ss_pred cCCCCeEEEEecCCCCcEEE--EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCc
Q 010997 321 AHDADLHCVDWNPLDDNLIL--TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGL 396 (496)
Q Consensus 321 ~~~~~v~~i~~sp~~~~~l~--sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~ 396 (496)
...++|.++.|+| ++.-|+ -|-.=..+.|||++. .++..+. .++=+++-|+|.|..|+++|-. -|.
T Consensus 268 ~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~-------~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 268 LKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG-------KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred CCCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC-------CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc
Confidence 4578999999999 775444 456678999999994 7777764 6777899999999966544433 488
Q ss_pred EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 397 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
|-|||+... .++..+.. ..-+-+.|+|+|.+++.++..- =---|+.++||++...
T Consensus 338 mEvwDv~n~---------------K~i~~~~a--~~tt~~eW~PdGe~flTATTaP--RlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 338 MEVWDVPNR---------------KLIAKFKA--ANTTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHYTGS 392 (566)
T ss_pred eEEEeccch---------------hhcccccc--CCceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEecCc
Confidence 999999884 22322222 2345689999999887653210 0114799999999854
No 254
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=4.1e-10 Score=107.43 Aligned_cols=270 Identities=9% Similarity=0.067 Sum_probs=155.4
Q ss_pred cEE-EEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997 154 KIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (496)
Q Consensus 154 ~~l-at~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~ 232 (496)
+++ ++-..+|.|.|.|..+. +.+..+..... .-..+.++|||+++++++.||.|.++|+.+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~------------~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-- 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN------------KVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-- 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-------------SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE--
T ss_pred cEEEEEecCCCEEEEEECCCC------------eEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccE--
Confidence 444 45667899999999887 56667766543 334578999999999999999999999986543
Q ss_pred cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (496)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (496)
+..+.. .....+++++++|..+++++...+.+.++|.++.+
T Consensus 71 --------------------------------------v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 71 --------------------------------------VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp --------------------------------------EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred --------------------------------------EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 233332 23467899999996555666789999999998877
Q ss_pred ccceeeecc-------CCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997 313 SPVIKVEKA-------HDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (496)
Q Consensus 313 ~~~~~~~~~-------~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~ 384 (496)
.+..... ....+..|..+| ... ++++--..+.|.+.|..... ....+............|+|++
T Consensus 112 --~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~-----~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 112 --PVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPK-----NLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSS-----CEEEEEEE--TTEEEEEE-TTS
T ss_pred --ceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEecccc-----ccceeeecccccccccccCccc
Confidence 3433322 245678888888 455 55555666899999988732 1222222345567889999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcccCCCCCC----------------------------------------CCCCCeeEE
Q 010997 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----------------------------------------TNYPAGLFF 424 (496)
Q Consensus 385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~ 424 (496)
++++++...++.|-++|..+.......+... +....+.+.
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 9988777777889999987642211100000 000111222
Q ss_pred EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc-ceEEEeccCC
Q 010997 425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK-AHVISCTSKP 496 (496)
Q Consensus 425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~sP 496 (496)
.......+ ..+..+|+++++.+... .+...++|.|+|..+ .+.+.++.... ..+..+.|+|
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~----~~~~~~~v~viD~~t------l~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTF----LNPDADTVQVIDKKT------LKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-T----T-SSHT-EEEEECCG------TEEEE-HHHHHT--EEEEEE-T
T ss_pred EEECCCCc-ceeecCCCCccEEeecc----CCCCCceEEEEECcC------cceeEEEeccCCCcEeccEECC
Confidence 22222333 56788999999887622 223358999999994 34444443222 2356666654
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3e-10 Score=112.14 Aligned_cols=220 Identities=11% Similarity=0.103 Sum_probs=128.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeC-CC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL- 212 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~- 212 (496)
..+...+...+|+| +++.||..+. ++ .|++||+.++.. +.+..+.+ .....+|+|+|+.|+
T Consensus 214 ~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~----------~~lt~~~g----~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 214 LRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVR----------EKVTSFPG----INGAPRFSPDGKKLAL 278 (448)
T ss_pred ecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCe----------EEecCCCC----CcCCeeECCCCCEEEE
Confidence 34566788999999 7776665543 33 588889877621 11111222 234789999999776
Q ss_pred EecCCCc--EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 213 SGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 213 sg~~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+.+.+|. |.++|+.++.. ..+..+.......+|+|++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~-----------------------------------------~~lt~~~~~~~~p~wSpDG 317 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKAL-----------------------------------------TRITRHRAIDTEPSWHPDG 317 (448)
T ss_pred EEeCCCCeEEEEEECCCCCe-----------------------------------------EECccCCCCccceEECCCC
Confidence 4566775 66667654321 2233334455678999999
Q ss_pred CceEEEEcCCCe--EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CC--cEEEEeCCCCCCCCCCCCc
Q 010997 291 AQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 291 ~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg--~i~iwd~~~~~~~~~~~~~ 365 (496)
..++++...++. |.++|+.+++. .. +..........+|+| ++.+|+..+. ++ .|.++|+.+ +. .
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~--~~-Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~------g~-~ 386 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKV--SR-LTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET------GA-M 386 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCE--EE-EecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC------CC-e
Confidence 555555544554 55566666552 22 111222334578999 7877766554 44 355567765 32 2
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
..+... .......|+|+|+.|+.+...++. +.+++.... ....+..+.+.+...+|+|
T Consensus 387 ~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~----------------~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 387 QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR----------------FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEECcCCCCCcCCCccCC
Confidence 333322 122345799999987766666665 556665431 1222334455677888887
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=5.3e-11 Score=119.37 Aligned_cols=201 Identities=15% Similarity=0.170 Sum_probs=144.3
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
|+.-.+.-+...++.+..+..+.+||............ .+ ... .
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------------------------------~e-r~~----l 133 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------------------------------DE-RCT----L 133 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCC-------------------------------Cc-eEE----E
Confidence 34444555677888888899999999875432111100 00 000 0
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
....-+.++++. -++++|+.-+.|.+|+......+. .+.+|.+.|.++.|+- ++.++++.|.|.++|+|++.+.
T Consensus 134 ~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~-- 207 (967)
T KOG0974|consen 134 YSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSR-- 207 (967)
T ss_pred EeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc--eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccc--
Confidence 112223344544 689999999999999998544332 4679999999999999 9999999999999999999983
Q ss_pred CCCCCCce-EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC-CcceE
Q 010997 359 NGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDF 436 (496)
Q Consensus 359 ~~~~~~~~-~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~ 436 (496)
+... ..-+|...|..+.|+|+ . ++|++.|.+.++|+.... .+....+|.. .|..+
T Consensus 208 ----~~~~~~~fgHsaRvw~~~~~~n--~-i~t~gedctcrvW~~~~~----------------~l~~y~~h~g~~iw~~ 264 (967)
T KOG0974|consen 208 ----EVLGCTGFGHSARVWACCFLPN--R-IITVGEDCTCRVWGVNGT----------------QLEVYDEHSGKGIWKI 264 (967)
T ss_pred ----cccCcccccccceeEEEEeccc--e-eEEeccceEEEEEecccc----------------eehhhhhhhhcceeEE
Confidence 3333 55679999999999999 3 579999999999976552 2234556654 68889
Q ss_pred EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCc
Q 010997 437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 472 (496)
Q Consensus 437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~ 472 (496)
+..+.....+ |+|.|+.+++|++.....
T Consensus 265 ~~~~~~~~~v--------T~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 265 AVPIGVIIKV--------TGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred EEcCCceEEE--------eeccCcchhhhhhhcccc
Confidence 9888655544 677779999999975443
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=4.9e-11 Score=119.66 Aligned_cols=194 Identities=19% Similarity=0.306 Sum_probs=146.0
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
....++.++.+..+.+||............. ....+. ....+.++++.-++++|+.-+.|.+|+.....
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~----er~~l~-----~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-- 166 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSD----ERCTLY-----SSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-- 166 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCC----ceEEEE-----eEEEEeccCcEEEEEeccccccEEEEeccccC--
Confidence 5567788888889999998776322211100 000100 11123345556689999999999999986110
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (496)
.+ ..+.+|.+.|.++.|+-+| .+++++|+|.++++|++.+.
T Consensus 167 -------------------------------------~p-~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 167 -------------------------------------KP-IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR 207 (967)
T ss_pred -------------------------------------Cc-ceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc
Confidence 01 2578999999999999999 79999999999999999998
Q ss_pred CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-CEEEEEEcCCCCCEEEE
Q 010997 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLCVQWSPDKSSVFGS 390 (496)
Q Consensus 312 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~i~~l~~sp~~~~llas 390 (496)
+.... ..-+|...|..+.|.| + .++|++.|-+.++|+.. +..+..+.+|.. .|..++..+... +.+|
T Consensus 208 ~~~~~-~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT 275 (967)
T KOG0974|consen 208 EVLGC-TGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVT 275 (967)
T ss_pred cccCc-ccccccceeEEEEecc-c--eeEEeccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCce-EEEe
Confidence 85432 3448999999999998 4 99999999999999766 366668888864 689999988776 6789
Q ss_pred EeCCCcEEEEECCCCCc
Q 010997 391 SAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 391 ~~~dg~i~iwd~~~~~~ 407 (496)
++.|+.+++||+...+.
T Consensus 276 ~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 276 GGNDSTLKLWDLNGRGL 292 (967)
T ss_pred eccCcchhhhhhhcccc
Confidence 99999999999976543
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.8e-10 Score=109.48 Aligned_cols=222 Identities=11% Similarity=0.108 Sum_probs=132.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
....+...+...+|+| +++.||..+.+ ..|.+||+.++.. + .+....+ .+....|+|+|++|
T Consensus 193 ~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~----------~---~l~~~~g-~~~~~~~SpDG~~l 257 (430)
T PRK00178 193 TLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR----------E---QITNFEG-LNGAPAWSPDGSKL 257 (430)
T ss_pred EEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE----------E---EccCCCC-CcCCeEECCCCCEE
Confidence 3446777889999999 77777665533 3699999987621 1 1111222 24578999999977
Q ss_pred E-EecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 212 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 212 ~-sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
+ +.+.+| .|.+||+.++.. ..+..+........|+|
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQL-----------------------------------------SRVTNHPAIDTEPFWGK 296 (430)
T ss_pred EEEEccCCCceEEEEECCCCCe-----------------------------------------EEcccCCCCcCCeEECC
Confidence 6 555555 577778765422 22223334455678999
Q ss_pred CCCceEEEEcCCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-C--cEEEEeCCCCCCCCCCC
Q 010997 289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-N--SVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-g--~i~iwd~~~~~~~~~~~ 363 (496)
++..++++...+| .|.++|+.+++. .... ..........|+| ++..|+..+.+ + .|.++|+.+ +.
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt-~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t------g~ 366 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVT-FVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR------GS 366 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCE--EEee-cCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCC------CC
Confidence 9955555554444 466677766652 2111 1122334578999 88888766543 3 578889876 32
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
...+.. ........|+|+|+.++.+...++. |.++++... ....+..+.+.+...+|+|
T Consensus 367 -~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----------------~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 367 -VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----------------VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEECcCCCCCcCCCccCC
Confidence 233322 2222356899999987766655544 555555431 1112223445677778887
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=1.3e-10 Score=102.68 Aligned_cols=203 Identities=14% Similarity=0.174 Sum_probs=141.5
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
.+.+++++.|.+ ....|+.|-..|++.-+.+...-++. ........|.. .|..+-|+-...++++.+.|.
T Consensus 67 mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm--------~~~r~~~~h~~-~v~~~if~~~~e~V~s~~~dk 136 (404)
T KOG1409|consen 67 MPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKM--------TFLKDYLAHQA-RVSAIVFSLTHEWVLSTGKDK 136 (404)
T ss_pred CCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhc--------chhhhhhhhhc-ceeeEEecCCceeEEEecccc
Confidence 456789999998 78899999999999999876552221 33445667877 689999988888999999998
Q ss_pred cEEEEecCCccccccCCccccccCCCCCc--eeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGS--IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
.+.---.+.+........ .......... ....+.................++..+.+|.+.+.+++|.+.. .++.+
T Consensus 137 ~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfS 214 (404)
T KOG1409|consen 137 QFAWHCTESGNRLGGYNF-ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFS 214 (404)
T ss_pred ceEEEeeccCCcccceEe-eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEe
Confidence 875443333321111000 0000001111 1112222222222222334556778899999999999999987 79999
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
|..|..+.+||+-..+. ......+|...|..+..-+ .-..+.+++.||.|.+||+..
T Consensus 215 g~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence 99999999999976653 3556678999999999888 678889999999999999875
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1e-10 Score=112.64 Aligned_cols=287 Identities=14% Similarity=0.215 Sum_probs=188.4
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCC---CCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLG---ATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
+......|+.|.. +..++|+|+.||.++|-.+.+........+ ........++.||.. .|..+.|+.+.+.|-|.
T Consensus 12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEecccccccccc
Confidence 4455689999999 777999999999999999887643222111 223344568899998 68999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
..+|.|.+|-+-.+.-... -+-....+.|.+++|+.+| ..+
T Consensus 90 Dt~GlIiVWmlykgsW~EE--------------------------------------MiNnRnKSvV~SmsWn~dG-~kI 130 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEE--------------------------------------MINNRNKSVVVSMSWNLDG-TKI 130 (1189)
T ss_pred CCCceEEEEeeecccHHHH--------------------------------------HhhCcCccEEEEEEEcCCC-cEE
Confidence 9999999998865421100 0112345678999999999 788
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC-CCCCceE----ec
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-VGSPINK----FE 369 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~~~~~~----~~ 369 (496)
+..-.||.|.+=.+...+ +.-..-.......+.|++ +...++.+-.+|.++++|....-... ...+... +.
T Consensus 131 cIvYeDGavIVGsvdGNR---IwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s 206 (1189)
T KOG2041|consen 131 CIVYEDGAVIVGSVDGNR---IWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS 206 (1189)
T ss_pred EEEEccCCEEEEeeccce---ecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec
Confidence 889999999887775543 111111122345789999 88888888899999999976411000 0011011 11
Q ss_pred cCCCCEEEEEEc--------CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 370 GHSAAVLCVQWS--------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 370 ~h~~~i~~l~~s--------p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
.....|-.+.|. |+.+ .||.+-..|.+.|-.-... +...++. .| ..|.+..|+++
T Consensus 207 ~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND-------------~~Pvv~d-tg--m~~vgakWnh~ 269 (1189)
T KOG2041|consen 207 NFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSEND-------------PEPVVVD-TG--MKIVGAKWNHN 269 (1189)
T ss_pred CCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCC-------------CCCeEEe-cc--cEeecceecCC
Confidence 122235555553 4666 5788888998887654431 2222332 22 56889999998
Q ss_pred CCcEEEEecCCCC--CCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997 442 DPWTVVSVSDDCD--STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 442 ~~~l~~s~s~d~~--sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~ 494 (496)
|.. +|.|+.|.+ .--.-+.|+++.+- |..+.+|+....-|++++|
T Consensus 270 G~v-LAvcG~~~da~~~~d~n~v~Fysp~-------G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 270 GAV-LAVCGNDSDADEPTDSNKVHFYSPY-------GHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred CcE-EEEccCcccccCccccceEEEeccc-------hhheEEEecCCceeeeeEE
Confidence 865 555554421 11112467776654 7788888888888888877
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4.5e-09 Score=102.98 Aligned_cols=205 Identities=12% Similarity=0.147 Sum_probs=119.5
Q ss_pred CCCceeEEEecCCCCc---EEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 139 HPGEVNRIRELPQNTK---IVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~---~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..+.+..-+|+| +++ ++++...+| .|++.++.++.. +.+..+.+ .....+|+|||+.|+.
T Consensus 183 ~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~----------~~lt~~~g----~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 183 EHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG----------KKILALQG----NQLMPTFSPRKKLLAF 247 (428)
T ss_pred CCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc----------eEeecCCC----CccceEECCCCCEEEE
Confidence 445566779999 654 323444443 577778876621 22222222 2356899999998775
Q ss_pred ec-CCC----cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 214 GG-KDK----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 214 g~-~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
.+ .+| .+.+|++..+.. ..+......+.......+|+|
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~~-------------------------------------g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGAI-------------------------------------GKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred EECCCCCcceeEEEeecccCCC-------------------------------------CcceEeecCCCCCcCCeEECC
Confidence 44 223 344455543210 011122222223345679999
Q ss_pred CCCceEEEEcCCCeEEEEEccC--CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCCCCCCCC
Q 010997 289 SSAQEFCSVGDDSCLILWDARV--GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~ 363 (496)
+|..++++...+|...||.+.. ... ....+..+...+....|+| ++..|+..+.+ ..|.+||+.. +.
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~------g~ 362 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT------GR 362 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC------CC
Confidence 9954455555567666665432 111 1223334445677899999 88888765543 3689999986 33
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEK 404 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~ 404 (496)
...+......+....|+|+|+.|+.++.. ...|.++|+..
T Consensus 363 -~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 363 -DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred -eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34444334456789999999987656554 34677888866
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.6e-09 Score=99.37 Aligned_cols=302 Identities=16% Similarity=0.208 Sum_probs=175.2
Q ss_pred ccceEEEecCCCceeEEEecCCCCcEEEEEeCC-----------CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCc
Q 010997 130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDS-----------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198 (496)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~ 198 (496)
.+...+.+.|++ |.-+.||| +.+||+|-+.. ..++|||+.++...... ..+.+... .
T Consensus 240 ~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF---------~~~~~~~~-~ 307 (698)
T KOG2314|consen 240 SFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF---------PVIKSPYL-K 307 (698)
T ss_pred cHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcce---------eccCCCcc-c
Confidence 455567788987 88899999 88999987652 37899999999433221 11111111 1
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCCcccccc--CCccc---cccCCCCCceeccCCCCCC--CCCCCCCCCCcCCe
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA--TDPAT---AKSAGSSGSIIKQSPKPGD--GNDKAADGPSVGPR 271 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 271 (496)
-.-..||.|++|+|.-.. .+|.|++...-..... ..... ......+..+....+.... ..+.+...++...+
T Consensus 308 WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred cceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 124689999999987665 5788888664211100 00000 1111112222222222221 22333344444444
Q ss_pred eeeecCCCceeEEEEccCCCceEEE----------EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEE
Q 010997 272 GIYNGHEDTVEDVTFCPSSAQEFCS----------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (496)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s 341 (496)
++-.-|.-.=..+-|-.+| .+|+. .+.-..+-|+.++....|+... .....|...+|.| .|+.+++
T Consensus 387 Rt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP-~gdkF~v 462 (698)
T KOG2314|consen 387 RTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEP-HGDKFAV 462 (698)
T ss_pred eeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--ecchheeeeeecc-CCCeEEE
Confidence 3333222111233444455 34432 2223357788888777443332 4567899999999 6776665
Q ss_pred EcC---CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEE--eCCCcEEEEECCCCCcccCCCCCCC
Q 010997 342 GSA---DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTT 416 (496)
Q Consensus 342 gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~--~~dg~i~iwd~~~~~~~~~~~~~~~ 416 (496)
-+. ..++.+|-+.+.. .....+..+. ....+.+.|+|.|+++++.+ |..|.+.++|+.....
T Consensus 463 i~g~~~k~tvsfY~~e~~~--~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~--------- 529 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNI--KKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL--------- 529 (698)
T ss_pred EEccccccceeEEEeecCC--Cchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhh---------
Confidence 443 3578999888521 1134445554 35668999999999765443 3478899999985211
Q ss_pred CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 417 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.......|. ..+.+-|.|.|+|++.+.+.= ....|+--+||++..
T Consensus 530 -----k~~~~~eh~-~at~veWDPtGRYvvT~ss~w--rhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 530 -----KDTASPEHF-AATEVEWDPTGRYVVTSSSSW--RHKVDNGYRIFTFQG 574 (698)
T ss_pred -----hhccCcccc-ccccceECCCCCEEEEeeehh--hhccccceEEEEeec
Confidence 111122333 357899999999987766544 566788899999984
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=2.3e-10 Score=99.85 Aligned_cols=254 Identities=15% Similarity=0.197 Sum_probs=154.0
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-----------CcceeeeecCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCPT 207 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-----------~~v~~l~~~p~ 207 (496)
....|+++.|.. .|.+||+|...|.|.+|.-+... ....+....+++|.. ..|..+.|..+
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~-------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSY-------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeeccccc-------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence 345689999987 88999999999999999876652 112234445566642 24778888876
Q ss_pred CC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC------CCcCCeeee-ecCC
Q 010997 208 EP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG------PSVGPRGIY-NGHE 278 (496)
Q Consensus 208 ~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~h~ 278 (496)
+. .++..+.|++|++|.+............-.... .....++..+...+.+... ....+.+.+ ..|.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhcccccccc----ccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 43 456666799999999875422211111000000 0000000000000001000 112233444 5788
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-ceeeeccC-----CCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~-----~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd 352 (496)
-.|+++.|+.+. ..++ .++|-.|.+|++.-.... .+...+.| ..-|++..|+|...+.+.-.+..|.|++-|
T Consensus 173 yhiNSiS~NsD~-et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 173 YHINSISFNSDK-ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred eEeeeeeecCch-heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 889999999887 4444 457889999998765421 12222333 346889999998788999999999999999
Q ss_pred CCCCCCCCCCC----------CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997 353 RRNLTSNGVGS----------PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (496)
Q Consensus 353 ~~~~~~~~~~~----------~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~ 408 (496)
+|+..--.... ...-+.+-...|..+.|+++|++++ +-+ --+|+|||++....+
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~p 314 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNP 314 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCC
Confidence 99522100001 1111233456789999999999754 444 568999999875443
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=9.4e-11 Score=113.24 Aligned_cols=267 Identities=19% Similarity=0.331 Sum_probs=180.9
Q ss_pred hhhhCcCCCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEE
Q 010997 57 WLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKT 136 (496)
Q Consensus 57 ~~~~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (496)
..++|...|-.-.++|.|.-... .++-. + +.+.. .||++..+.. .-...-+
T Consensus 60 r~l~h~tpw~vad~qws~h~a~~-------~wiVs-t--s~qka-iiwnlA~ss~------------------~aIef~l 110 (1081)
T KOG0309|consen 60 RWLHHITPWQVADVQWSPHPAKP-------YWIVS-T--SNQKA-IIWNLAKSSS------------------NAIEFVL 110 (1081)
T ss_pred eeeeccCcchhcceecccCCCCc-------eeEEe-c--Ccchh-hhhhhhcCCc------------------cceEEEE
Confidence 45678889999999998863322 11111 1 11222 2454432111 1122345
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
-+|..+|+.+.|.|+.+.++|+++.|-.+..||+.... .++.....-.. .-..++|+-....+++.+.
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-----------~p~ys~~~w~s-~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-----------RPFYSTSSWRS-AASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCC-----------cceeeeecccc-cCceeeecccCcchhhhcc
Confidence 68999999999999999999999999999999998762 44444443333 2478999987776777777
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
.+.|.+||.+.+. .++..+++|...|+.+.|...-...+.+
T Consensus 179 g~~i~vwd~r~gs---------------------------------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s 219 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGS---------------------------------------TPLCSLKGHVSSVNSIDFNRFKYSEIMS 219 (1081)
T ss_pred CCceEEEeccCCC---------------------------------------cceEEecccceeeehHHHhhhhhhhhcc
Confidence 8899999998542 3457778899999999998765567999
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCC----CCCCCceEeccC
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSN----GVGSPINKFEGH 371 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~----~~~~~~~~~~~h 371 (496)
++.|++|+.||........... .....+|..-.+-|+... ++.-.-.+..+.+++.++.... ...+++++|.||
T Consensus 220 ~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH 298 (1081)
T KOG0309|consen 220 SSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH 298 (1081)
T ss_pred cCCCCceeeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence 9999999999998765322222 234556666677774332 2322222335555555443221 125789999999
Q ss_pred CCCEEEEEEcCCC---------CCEEEEEeCCCcEEEEECCC
Q 010997 372 SAAVLCVQWSPDK---------SSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 372 ~~~i~~l~~sp~~---------~~llas~~~dg~i~iwd~~~ 404 (496)
...|....|-..+ .+-|+|-+.|..+++|-+..
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 9999888876432 34578999999999998864
No 265
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.21 E-value=4.8e-10 Score=95.50 Aligned_cols=212 Identities=18% Similarity=0.228 Sum_probs=126.3
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i 222 (496)
|..+.++. ...|+++..++.+..+..................+...+..|++ +-.+-+.+--++.++++..||.+.+
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~se-p~p~~~~s~~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSE-IDPNDACTMTDNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCC-CCCcccccccCCceEecCCCceEEE
Confidence 45555543 34677777777666665544322111111112244556665554 2233333445678999999999999
Q ss_pred EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc----
Q 010997 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG---- 298 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---- 298 (496)
.+.+.........+ ..|.+ -.+.+....+ +++.++.
T Consensus 116 ~s~~~~~~~~~~i~--------------------------------------~~~~~-~as~~~~~~~-~~i~s~~~g~~ 155 (319)
T KOG4714|consen 116 FSTDKDLALMSRIP--------------------------------------SIHSG-SASRKICRHG-NSILSGGCGNW 155 (319)
T ss_pred EechHHHhhhhhcc--------------------------------------ccccc-ccccceeecc-cEEecCCcceE
Confidence 99875211000000 00111 1111222222 2222221
Q ss_pred -CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 299 -DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 299 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
.-+..+.|+++..+. .... ......|.+++-+|...+++++|+.||.+-+||.|+.. .++..+..|+.+|..
T Consensus 156 n~~d~~~a~~~~p~~t-~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKT-LIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWE 228 (319)
T ss_pred eeccceeeeccccccc-cccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhh
Confidence 223456677665442 1111 12234499999999777889999999999999999852 567778899999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
+-|+|..+.-|.++++||.+--||...
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCC
Confidence 999996544345999999999999874
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=2.6e-10 Score=99.48 Aligned_cols=223 Identities=16% Similarity=0.256 Sum_probs=143.2
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
.|+++.|...|.||++|...|.|.++.-+...... .+....|.+|
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce-----------------------------------ykf~teFQsh 72 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE-----------------------------------YKFFTEFQSH 72 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccc-----------------------------------hhhhhhhccc
Confidence 68999999999999999999999999765432000 0000112222
Q ss_pred ------------CCceeEEEEccC-CCceEEEEcCCCeEEEEEccCCC------------------c-------------
Q 010997 278 ------------EDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGT------------------S------------- 313 (496)
Q Consensus 278 ------------~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~------------------~------------- 313 (496)
...|..+.|..+ +...|+..+.|.+|++|-++... .
T Consensus 73 e~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl 152 (460)
T COG5170 73 ELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL 152 (460)
T ss_pred ccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc
Confidence 245788888654 44578888899999999887541 0
Q ss_pred ----------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC-----CCEEEE
Q 010997 314 ----------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCV 378 (496)
Q Consensus 314 ----------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-----~~i~~l 378 (496)
|+.....+|...|+++.|+. +...++++ .|-.|.+|++.-.... -.+..++.|. .-|++.
T Consensus 153 s~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~s---FnIVDiKP~nmeeLteVItSa 227 (460)
T COG5170 153 SEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGS---FNIVDIKPHNMEELTEVITSA 227 (460)
T ss_pred cccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCc---eEEEeccCccHHHHHHHHhhc
Confidence 11111246778899999998 67777665 6788999998875421 1122334443 468999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC-CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
.|+|..-.+|.-.+..|.|++-|++....+........ ...+.-..-+.+-...|.++.|+++|++++ +-+.
T Consensus 228 eFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRdy------ 300 (460)
T COG5170 228 EFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRDY------ 300 (460)
T ss_pred ccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eecc------
Confidence 99998777777788899999999985322211100000 000000111223345789999999887755 3222
Q ss_pred CCCeEEEeecCC
Q 010997 458 GGGTLQIWRMSD 469 (496)
Q Consensus 458 ~Dg~i~iw~~~~ 469 (496)
.+|+|||++.
T Consensus 301 --ltvkiwDvnm 310 (460)
T COG5170 301 --LTVKIWDVNM 310 (460)
T ss_pred --ceEEEEeccc
Confidence 6999999974
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.5e-10 Score=108.37 Aligned_cols=219 Identities=15% Similarity=0.201 Sum_probs=151.5
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
..-...+|+..|..++... +.+-+++++.|.+|++|.+...... .....+..+++.|+. +|..+.|-.+.+++
T Consensus 727 rL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk-~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKK-PIHDIGFLADLRSI 799 (1034)
T ss_pred eeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccC-cccceeeeecccee
Confidence 3445679999999998777 7788999999999999999765322 123356778899998 79999999988888
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
+++ ||-|.+||.--+........ ..-.+-.+.|.++.- -+..
T Consensus 800 ~Sc--D~giHlWDPFigr~Laq~~d-----------------------------------apk~~a~~~ikcl~n-v~~~ 841 (1034)
T KOG4190|consen 800 ASC--DGGIHLWDPFIGRLLAQMED-----------------------------------APKEGAGGNIKCLEN-VDRH 841 (1034)
T ss_pred eec--cCcceeecccccchhHhhhc-----------------------------------CcccCCCceeEeccc-Ccch
Confidence 876 79999999754322110000 000111122333321 1222
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
-+++.|+...+|+++|.|.....+.... .+-...+.+++..+ .|+.+|.|-.+|+|.+.|.|+ +..+..+
T Consensus 842 iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~------G~vINsw 914 (1034)
T KOG4190|consen 842 ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN------GKVINSW 914 (1034)
T ss_pred heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC------CceeccC
Confidence 3444457889999999998874333222 23446789999999 899999999999999999999 7878877
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEE-EECCC
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI-WDYEK 404 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~i-wd~~~ 404 (496)
+........++- |..+ .++....|..+.+ |-...
T Consensus 915 rpmecdllqlaa-psdq-~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 915 RPMECDLLQLAA-PSDQ-ALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CcccchhhhhcC-chhH-HHHhhcccceeEeeehhcC
Confidence 766665555553 4444 3566667888888 76544
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=1.6e-10 Score=121.72 Aligned_cols=187 Identities=20% Similarity=0.342 Sum_probs=139.6
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
.|.++.-+|...+.+||+.||.|++|....+....... ..-
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r---------------------------------------t~g 2250 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR---------------------------------------TAG 2250 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee---------------------------------------ccC
Confidence 57888888989999999999999999876543221110 112
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc---CCCcEEEEeCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR 354 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~dg~i~iwd~~ 354 (496)
...|+.+.|+.+| +.+..+..||.+.+|... .+ .....+.|....+.+.|-. ..+++++ .++.+.+||..
T Consensus 2251 ~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk--~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2251 NSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK--PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred cchhhhhhhcccC-CceeeeccCCceeecccC-Cc--ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcc
Confidence 2778999999999 789999999999999987 22 4556678999999998863 6677765 46899999987
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 434 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 434 (496)
.+.. ...++ ..|.+.++++++.|..+ +|.+||.+|.|++||++.. ++. |.-..
T Consensus 2324 ~~~~---~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqr---------------ql~-----h~~~~- 2376 (2439)
T KOG1064|consen 2324 LPPM---NSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQR---------------QLR-----HTFQA- 2376 (2439)
T ss_pred cCcc---cceee--eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHH---------------HHH-----HHhhh-
Confidence 6431 23344 78999999999999988 6779999999999999874 121 11111
Q ss_pred eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
++ ...+++ +|+..|.++||+++.
T Consensus 2377 ---~~-~~~~f~--------~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2377 ---LD-TREYFV--------TGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ---hh-hhheee--------ccCcccceEEEEccc
Confidence 44 344555 677779999999984
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=5.3e-08 Score=105.22 Aligned_cols=286 Identities=12% Similarity=0.151 Sum_probs=154.8
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCC-CCCCceEE-ecCCCCcceeeeecCCCCceEEec-CCCcE
Q 010997 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGAT-NSRPDLIL-TGHQDNAEFALAMCPTEPYVLSGG-KDKSV 220 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~l-~~h~~~~v~~l~~~p~~~~l~sg~-~Dg~i 220 (496)
..+++.+.++.++++-+.++.|++||....... ...+.. .....-.+ ..+-. .-.+++++++++.|+.+. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~-~ig~~g~~G~~dG~~~~a~f~-~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV-QIGSTGEEGLRDGSFEDATFN-RPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE-EEccCCCcCCCCCchhccccC-CCcEEEEeCCCCEEEEEeCCCceE
Confidence 356777767778888888899999998654110 000000 00000000 00111 136889999887655544 45789
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (496)
+++|+.++........ +.. + ............. -....+++++|++..++++.+.+
T Consensus 649 r~id~~~~~V~tlag~-------G~~-----------g--~~~~gg~~~~~~~----ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 649 REIDFVNETVRTLAGN-------GTK-----------G--SDYQGGKKGTSQV----LNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred EEEecCCCEEEEEecc-------Ccc-----------c--CCCCCChhhhHhh----cCCCeEEEEecCCCeEEEEECCC
Confidence 9999876432110000 000 0 0000000000000 11235889999655788888899
Q ss_pred CeEEEEEccCCCccceeeecc---------------CCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCC----
Q 010997 301 SCLILWDARVGTSPVIKVEKA---------------HDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNG---- 360 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~---------------~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~---- 360 (496)
+.|++||...+.. ..+.+ .-.....|+++| ++. ++++-+.++.|++||+.+.....
T Consensus 705 ~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 705 HQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CeEEEEECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 9999999876641 11111 112456799999 665 66667778999999988621000
Q ss_pred ---CCCCceEeccC--------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997 361 ---VGSPINKFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (496)
Q Consensus 361 ---~~~~~~~~~~h--------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 429 (496)
....+..+..+ -.....++++++|. ++++-..++.|++||..................... ...+.
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~--~~~a~ 857 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK--ALKAQ 857 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc--ccccc
Confidence 00000111101 11346899999997 777888899999999876311100000000000000 01122
Q ss_pred CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 430 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 430 ~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
-.....++++++|. ++++-+. +++|++||+...
T Consensus 858 l~~P~GIavd~dG~-lyVaDt~-------Nn~Irvid~~~~ 890 (1057)
T PLN02919 858 LSEPAGLALGENGR-LFVADTN-------NSLIRYLDLNKG 890 (1057)
T ss_pred cCCceEEEEeCCCC-EEEEECC-------CCEEEEEECCCC
Confidence 23567899999886 5554443 489999999743
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.11 E-value=2.3e-08 Score=85.86 Aligned_cols=226 Identities=11% Similarity=0.067 Sum_probs=146.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCcccc
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
-.+||.|+..|...+|...+.+ ........|.. .|+-+.=.-+ .-.+..++.|.++++.+++.+...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~-----------~h~~~cd~snn-~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTND-----------GHLYQCDVSNN-DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred ccEEEeccccceeeeecccCcc-----------cceeeeccccc-chhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 3589999999999999998762 11122222222 1221111112 224677888999999988743211
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC--ceeEEEEccCCCceEEEEcCCCeEEEEEcc
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTFCPSSAQEFCSVGDDSCLILWDAR 309 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 309 (496)
+..|.. .+.++.+++++ .++++.++...|..|.+.
T Consensus 152 ------------------------------------------~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id 188 (344)
T KOG4532|consen 152 ------------------------------------------FAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAID 188 (344)
T ss_pred ------------------------------------------ceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeC
Confidence 112222 37889999998 789999999999999987
Q ss_pred CCCcccee-eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe----ccCCCCEEEEEEcCCC
Q 010997 310 VGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF----EGHSAAVLCVQWSPDK 384 (496)
Q Consensus 310 ~~~~~~~~-~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~i~~l~~sp~~ 384 (496)
....-... .....++.-.+..|+. ....+|+++.||++.|||+|.+. .+.... ..|.+++..+.|++.|
T Consensus 189 ~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~-----tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 189 DESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMA-----TPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred CccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccc-----cchhhhcccCCCCCCceEEEEecCCC
Confidence 65532333 2334456667889998 88999999999999999999864 333322 3589999999999866
Q ss_pred CC-EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC-CcceEEecCCCCcEEE
Q 010997 385 SS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHWNASDPWTVV 447 (496)
Q Consensus 385 ~~-llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~p~~~~l~~ 447 (496)
.. ||.-.-.-+.+.+.|++.....+.....+ .. ...|.. .|..-.|+.++....+
T Consensus 263 ~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~-----d~---~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 263 LLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD-----DV---ERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred cceEEEEecCcceEEEEEcccCceeeEEecCc-----cc---cccccccccccccccCCCccccc
Confidence 43 23233336789999999864433221111 11 122333 3777778777665554
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=7.8e-08 Score=89.81 Aligned_cols=289 Identities=17% Similarity=0.215 Sum_probs=163.7
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCC---------------cEEEEeCCCCCCccccCCCCCCCCceEEecCCCC-c
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSP---------------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-A 198 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~-~ 198 (496)
..+.|+ .|.-+.|+| ++++|.+-+..+ .+.|||+.++ ..+..+.+.... .
T Consensus 67 ~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg------------~iv~sf~~~~q~~~ 132 (561)
T COG5354 67 VRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG------------MIVFSFNGISQPYL 132 (561)
T ss_pred eeeecC-CceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCc------------eeEeeccccCCccc
Confidence 444555 488888999 888998877654 4899999988 334444443331 1
Q ss_pred ce-eeeecCCCCceEEecCCCcEEEEecCCcccccc---CCcccc----ccCCCCCc-eeccCCC--CCCCCCCCCCCCC
Q 010997 199 EF-ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA---TDPATA----KSAGSSGS-IIKQSPK--PGDGNDKAADGPS 267 (496)
Q Consensus 199 v~-~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~---~~~~~~----~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~ 267 (496)
.+ -+.|+-+.+|+|-- ....+.|+++........ ..+... ....+... +..+.+. ...+.+.++....
T Consensus 133 ~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~ 211 (561)
T COG5354 133 GWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK 211 (561)
T ss_pred ccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence 33 67888888776644 245788998722211000 000000 01111111 1222221 1222333333333
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEc----------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN 337 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 337 (496)
...+..-.-....=..+.|++.|..+++-.- ....+.|++++.... .......++|..++|+| .+.
T Consensus 212 ~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~~~~~~pVhdf~W~p-~S~ 287 (561)
T COG5354 212 NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVEKDLKDPVHDFTWEP-LSS 287 (561)
T ss_pred CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---ceeccccccceeeeecc-cCC
Confidence 3222221111112235678888744333221 125688888885552 22225678999999999 555
Q ss_pred EEEE--EcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCC
Q 010997 338 LILT--GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGP 413 (496)
Q Consensus 338 ~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~ 413 (496)
.|++ |-.+..+.++|++. ..... .....=..+.|+|.++++|..|-. .|.|-+||....
T Consensus 288 ~F~vi~g~~pa~~s~~~lr~-------Nl~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-------- 350 (561)
T COG5354 288 RFAVISGYMPASVSVFDLRG-------NLRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-------- 350 (561)
T ss_pred ceeEEecccccceeeccccc-------ceEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCc--------
Confidence 4443 45788999999996 43333 334555688899999987744432 477999998763
Q ss_pred CCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 414 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
..+...+.+- ...-+.|+|++.++....... ---.|+.|+|||+..
T Consensus 351 ------f~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~--k~~~Dn~i~l~~v~g 396 (561)
T COG5354 351 ------FKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSE--KLRVDNSIKLWDVYG 396 (561)
T ss_pred ------eEEEEEeecC--CceEeeccCCceEEEecCCCc--ccccCcceEEEEecC
Confidence 1222233332 345578999998877654322 223589999999984
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=8.6e-08 Score=82.37 Aligned_cols=200 Identities=9% Similarity=0.019 Sum_probs=129.8
Q ss_pred CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
-.+|+.|+.-|...+|...+..... .....|...|+-+.=.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~---------------------------------------~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHL---------------------------------------YQCDVSNNDVTLVKRY 124 (344)
T ss_pred ccEEEeccccceeeeecccCcccce---------------------------------------eeecccccchhhhhhh
Confidence 3489999999999999987543211 1122222222211111
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN- 366 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~- 366 (496)
.+....+..++.|.++++.++..+........ ..-.++++++++ ++.++++.+....|.+|.+.... ...+.
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~--~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s----ey~~~~ 197 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN--QNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES----EYIENI 197 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeec--cccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc----ceeeee
Confidence 12223466778888888888876552222111 113388999999 99999999999999999988743 22233
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
........=.+..|+.... .||++..||.+.|||++..+-+.. ....+...|.+.+..+.|++.|..=+
T Consensus 198 ~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~lDL 266 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGLLDL 266 (344)
T ss_pred EecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchh----------hhcccCCCCCCceEEEEecCCCcceE
Confidence 2233445557889998877 689999999999999998643221 11222345889999999998765433
Q ss_pred EEecCCCCCCCCCCeEEEeecCCC
Q 010997 447 VSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
.-.++. -+.+.+-|+++.
T Consensus 267 Lf~sEh------fs~~hv~D~R~~ 284 (344)
T KOG4532|consen 267 LFISEH------FSRVHVVDTRNY 284 (344)
T ss_pred EEEecC------cceEEEEEcccC
Confidence 333333 278899998854
No 273
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.02 E-value=5.8e-07 Score=85.98 Aligned_cols=240 Identities=10% Similarity=0.150 Sum_probs=145.1
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC----CCcEEEEecCCccccccCCccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK----DKSVVLWSIQDHITSSATDPAT 238 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~----Dg~i~iwd~~~~~~~~~~~~~~ 238 (496)
+.|++|++...... .........-. ....|+++|++++|.++.. ++.|..|++.....
T Consensus 13 ~gI~~~~~d~~~g~--------l~~~~~~~~~~--~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------- 74 (345)
T PF10282_consen 13 GGIYVFRFDEETGT--------LTLVQTVAEGE--NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------- 74 (345)
T ss_dssp TEEEEEEEETTTTE--------EEEEEEEEESS--SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT--------
T ss_pred CcEEEEEEcCCCCC--------ceEeeeecCCC--CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc--------
Confidence 68999988443111 11122222222 2367899999998888765 57999998874210
Q ss_pred cccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee-
Q 010997 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK- 317 (496)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 317 (496)
....+............++++|++..++++.-.+|.|.++++.........
T Consensus 75 ----------------------------~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~ 126 (345)
T PF10282_consen 75 ----------------------------TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV 126 (345)
T ss_dssp ----------------------------EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred ----------------------------eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence 111122222233455678999999555555567999999999874311111
Q ss_pred -ee----------ccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCC--ceEec-cCCCCEEEEEEcC
Q 010997 318 -VE----------KAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSP--INKFE-GHSAAVLCVQWSP 382 (496)
Q Consensus 318 -~~----------~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~--~~~~~-~h~~~i~~l~~sp 382 (496)
.. ........++.|+| +++++++.. ....|.+|++.... +.. ...+. ........++|+|
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~----~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDT----GKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-----TEEEEEEEECSTTSSEEEEEE-T
T ss_pred eecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCC----ceEEEeeccccccCCCCcEEEEcC
Confidence 11 01235678999999 887766653 34589999998732 111 12222 3455688999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec-CC--CCCcceEEecCCCCcEEEEecCCCCCCCCC
Q 010997 383 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGG 459 (496)
Q Consensus 383 ~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h--~~~V~~~~~~p~~~~l~~s~s~d~~sgg~D 459 (496)
++++++++.-.++.|.++++........ ..+.+..+. +. ......++++|++++++++....
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~------- 266 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLT--------EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS------- 266 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEE--------EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-------
T ss_pred CcCEEEEecCCCCcEEEEeecccCCcee--------EEEEeeeccccccccCCceeEEEecCCCEEEEEeccC-------
Confidence 9999888888899999999983111110 001111111 11 12567899999999999876554
Q ss_pred CeEEEeecC
Q 010997 460 GTLQIWRMS 468 (496)
Q Consensus 460 g~i~iw~~~ 468 (496)
++|.+|++.
T Consensus 267 ~sI~vf~~d 275 (345)
T PF10282_consen 267 NSISVFDLD 275 (345)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEEe
Confidence 899999995
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=2.7e-07 Score=98.01 Aligned_cols=245 Identities=14% Similarity=0.258 Sum_probs=139.2
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
..+.|..+.|.+ +...++.+..+|.|.+........ ......-|.-+..|.+++||||+..|+....++
T Consensus 74 ~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~----------~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~ 142 (928)
T PF04762_consen 74 PNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPD----------EDEIEIVGSVDSGILAASWSPDEELLALVTGEG 142 (928)
T ss_pred CCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCC----------CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCC
Confidence 457899999999 777788888999999993322100 112234444445799999999999999888899
Q ss_pred cEEEEecCCc----cccccCCcc---ccccCCCCCceeccCCCCCCCCCCCCCCCCc-CCeeeeecCCCceeEEEEccCC
Q 010997 219 SVVLWSIQDH----ITSSATDPA---TAKSAGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 219 ~i~iwd~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+|.+-+-.=. ......... .....-|.....+.+.......-...+.... .....+. +.+.-..|+|-.||
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG 221 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC
Confidence 9888653210 000000000 0000000000000000000000000000000 0012233 45566789999999
Q ss_pred CceEEEEcC---C---CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---CCcEEEEeCCCCCCCCC
Q 010997 291 AQEFCSVGD---D---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 291 ~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---dg~i~iwd~~~~~~~~~ 361 (496)
.+||+.+. . ..|+||+-. +. ...+...-.+--.+++|-| +|++||+... ...|.+|.-+-+..
T Consensus 222 -~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrh--- 293 (928)
T PF04762_consen 222 -EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRH--- 293 (928)
T ss_pred -cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEe---
Confidence 67777664 3 579999854 44 3333333333345789999 9999998765 34577776553221
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+.....+......|..++|++++. +||..-.|. |.+|-....
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCC
Confidence 111112223466899999999998 677766554 999998763
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=1.3e-06 Score=81.74 Aligned_cols=247 Identities=10% Similarity=0.053 Sum_probs=137.2
Q ss_pred ecCCCCcEEEEEe---------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC------CcceeeeecCCCCceE
Q 010997 148 ELPQNTKIVATHT---------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD------NAEFALAMCPTEPYVL 212 (496)
Q Consensus 148 ~~p~~~~~lat~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~------~~v~~l~~~p~~~~l~ 212 (496)
++|+...+.++.+ .+..|.+||..+.. ....+.-..+ .....++++|+|++|+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~ 120 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL------------PIADIELPEGPRFLVGTYPWMTSLTPDNKTLL 120 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc------------EEeEEccCCCchhhccCccceEEECCCCCEEE
Confidence 7894444444455 57899999999983 3333322111 1124789999999888
Q ss_pred Eec-C-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 213 SGG-K-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 213 sg~-~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
... . +..|.+.|+.+++....... ..+...+.. ..-..+..+.|+
T Consensus 121 V~n~~p~~~V~VvD~~~~kvv~ei~v-------------------------------p~~~~vy~t--~e~~~~~~~~Dg 167 (352)
T TIGR02658 121 FYQFSPSPAVGVVDLEGKAFVRMMDV-------------------------------PDCYHIFPT--ANDTFFMHCRDG 167 (352)
T ss_pred EecCCCCCEEEEEECCCCcEEEEEeC-------------------------------CCCcEEEEe--cCCccEEEeecC
Confidence 665 3 78999999987654322111 000111111 111222333444
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeecc-----CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKA-----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 365 (496)
....++-..+|....=.. ..+.. ...+ .|.+.++.++.+... |.|.+.|+....... ...+
T Consensus 168 ~~~~v~~d~~g~~~~~~~--------~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~~ 233 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPT--------EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPAI 233 (352)
T ss_pred ceEEEEecCCCceEEeee--------eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCccee-ccee
Confidence 333344444444321110 01101 0111 334436666666655 999999975422100 1222
Q ss_pred eEec-------cCCCCEEEEEEcCCCCCEEEEEe---------CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997 366 NKFE-------GHSAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (496)
Q Consensus 366 ~~~~-------~h~~~i~~l~~sp~~~~llas~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 429 (496)
..+. ...+.+.-++++|++..+++... ..+.|.++|..+. +.+....-
T Consensus 234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------------kvi~~i~v- 297 (352)
T TIGR02658 234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------------KRLRKIEL- 297 (352)
T ss_pred eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------------eEEEEEeC-
Confidence 2221 12344556999999998886442 1257999998874 33333221
Q ss_pred CCCcceEEecCCCC-cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997 430 RDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 482 (496)
Q Consensus 430 ~~~V~~~~~~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l 482 (496)
...+..++++|++. .++++.. .++.|.+.|.. +++.++++
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~-------~s~~VsViD~~------t~k~i~~i 338 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALST-------GDKTLYIFDAE------TGKELSSV 338 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCC-------CCCcEEEEECc------CCeEEeee
Confidence 23688999999998 6665432 35889999998 56666555
No 276
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=2.7e-09 Score=94.60 Aligned_cols=123 Identities=13% Similarity=0.225 Sum_probs=95.3
Q ss_pred CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc---cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~ 353 (496)
.++.|.+++|+..+ ++++.|+.+|.|..+|+|.+.. -+...+ -|.+.|+++..-..++++|++.+.+|.|++||+
T Consensus 251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 45778999998877 7999999999999999998721 122333 589999999887768899999999999999999
Q ss_pred CCCCCCCCCCCceEeccCCCCEEEEEE--cCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 354 RNLTSNGVGSPINKFEGHSAAVLCVQW--SPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~--sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
|..+. +.-+.++.+|...-.-+-+ .+... +++++++|...+||.+..+
T Consensus 329 R~~K~---~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 329 RATKC---KKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhhc---ccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccC
Confidence 98331 2338889998765444333 44555 4557999999999999974
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.1e-07 Score=93.22 Aligned_cols=251 Identities=16% Similarity=0.146 Sum_probs=170.4
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC----------
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE---------- 208 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~---------- 208 (496)
|...-+++.|+| .| +||-|+.. .|.|-|..+. +.+..+.-|.. .|+.+.|.|-.
T Consensus 14 ~~sN~~A~Dw~~-~G-LiAygshs-lV~VVDs~s~------------q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~ 77 (1062)
T KOG1912|consen 14 SRSNRNAADWSP-SG-LIAYGSHS-LVSVVDSRSL------------QLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS 77 (1062)
T ss_pred CcccccccccCc-cc-eEEEecCc-eEEEEehhhh------------hhhhccccCcc-ceeEEEeccCCCchhccCccc
Confidence 334467788888 54 77777765 7888888776 66677888886 79999998732
Q ss_pred --CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 209 --PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 209 --~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
-+|+++...|.|.+||...+.. +..+..|.+++.+++|
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~----------------------------------------~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASV----------------------------------------INWLSHSNDSVQDLCW 117 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhh----------------------------------------hhhhcCCCcchhheee
Confidence 2577888899999999875432 1345668889999999
Q ss_pred ccC---CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC-CC
Q 010997 287 CPS---SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-VG 362 (496)
Q Consensus 287 ~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~ 362 (496)
-+. ...+|++-....+|.+|+..+++ .............|+.+.|++...+..-+..|.+.+-+.-..+.+. .+
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCCc--eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 763 33578888888999999999988 4444445556778899999999888888888988887765433322 12
Q ss_pred CCceEeccCCC------------C-------------EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCC
Q 010997 363 SPINKFEGHSA------------A-------------VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417 (496)
Q Consensus 363 ~~~~~~~~h~~------------~-------------i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~ 417 (496)
+.++.-..|.. . ...++|+|.-++++ -....+.+.|+|+.-.
T Consensus 196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~------------ 262 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYE------------ 262 (1062)
T ss_pred eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhh------------
Confidence 22222122221 0 12467888877655 3334778999999874
Q ss_pred CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 418 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 418 ~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
..+....-..+.+.-+.|-|+...=+.- ++-.||.+.||--..
T Consensus 263 ---~~l~vvpier~~akfv~vlP~~~rd~Lf------clH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 263 ---CCLAVVPIERGGAKFVDVLPDPRRDALF------CLHSNGRLTIRVRKE 305 (1062)
T ss_pred ---ceeEEEEeccCCcceeEeccCCCcceEE------EEecCCeEEEEEeec
Confidence 3444444445566677787775432222 334469999997663
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.6e-07 Score=88.65 Aligned_cols=279 Identities=14% Similarity=0.210 Sum_probs=162.2
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-------
Q 010997 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK------- 216 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~------- 216 (496)
+-++||| .|.||+|--..| |.+|--.+-. ....+ .|.+ |.-+.|||..+||+|=+.
T Consensus 214 tyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~------------r~~RF-~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQG-IALWGGESFD------------RIQRF-YHPG--VQFIDFSPNEKYLVTYSPEPIIVEE 276 (698)
T ss_pred eeEEecC-CceEEEEEeccc-eeeecCccHH------------HHHhc-cCCC--ceeeecCCccceEEEecCCccccCc
Confidence 5789999 899999987664 8889755441 11222 3554 789999999999998653
Q ss_pred ----CCcEEEEecCCccccccCCccccccCCCCCceeccCC------CCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 217 ----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP------KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 217 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
...++|||+.++.....+... ........+...+. .....++.++..+...++..-.-.-..|.+..|
T Consensus 277 ~d~e~~~l~IWDI~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 277 DDNEGQQLIIWDIATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSW 354 (698)
T ss_pred ccCCCceEEEEEccccchhcceecc--CCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCccc
Confidence 258999999998654333221 01111111111111 112233444444443333222223467888999
Q ss_pred ccCCCceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE----------cCCCcEEEE
Q 010997 287 CPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG----------SADNSVRMF 351 (496)
Q Consensus 287 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg----------s~dg~i~iw 351 (496)
+|.+ ++||--... ..+.|-.+.+++ .+++..-+.-.=..+-|-. +|.+|+.- +.-..+-|+
T Consensus 355 sP~~-~llAYwtpe~~~~parvtL~evPs~~--~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIf 430 (698)
T KOG2314|consen 355 SPTS-NLLAYWTPETNNIPARVTLMEVPSKR--EIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIF 430 (698)
T ss_pred CCCc-ceEEEEcccccCCcceEEEEecCccc--eeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEE
Confidence 9987 666654321 234454444443 2333222222223345555 56666542 222346677
Q ss_pred eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (496)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 429 (496)
.++... -++.... -...|...+|-|.|..+.+..+. -.++.+|-+.... ..+.++..+..
T Consensus 431 rireKd-----Ipve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-----------~~~~lVk~~dk- 492 (698)
T KOG2314|consen 431 RIREKD-----IPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-----------KKPSLVKELDK- 492 (698)
T ss_pred EeeccC-----CCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------Cchhhhhhhcc-
Confidence 777621 3444443 56789999999999864333333 3568888887421 22234433332
Q ss_pred CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 430 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 430 ~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
...+.+.|+|.|+++++.+ -+|..|.+.++|+..
T Consensus 493 -~~~N~vfwsPkG~fvvva~-----l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 493 -KFANTVFWSPKGRFVVVAA-----LVSRRGDLEFYDTDY 526 (698)
T ss_pred -cccceEEEcCCCcEEEEEE-----ecccccceEEEecch
Confidence 3467899999999877655 345679999999983
No 279
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.9e-07 Score=88.26 Aligned_cols=207 Identities=19% Similarity=0.285 Sum_probs=131.0
Q ss_pred ceEEEecCCCceeEEEecCC-CCcEEEE-----EeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec
Q 010997 132 KKHKTIIHPGEVNRIRELPQ-NTKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 205 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~-~~~~lat-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~ 205 (496)
+.....-|...|+.+.++|. ....+|+ ++.-+.|+||.+.... ... .....++-- ... -.+.|+
T Consensus 157 ~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~------~~a~ksFFk--adk-vqm~WN 226 (566)
T KOG2315|consen 157 KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQ------PVANKSFFK--ADK-VQMKWN 226 (566)
T ss_pred cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccc------hhhhccccc--cce-eEEEec
Confidence 33334456788999999994 3445553 3455689999987321 110 011111111 112 368898
Q ss_pred CCCC-ce--EEecCCC---------cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997 206 PTEP-YV--LSGGKDK---------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (496)
Q Consensus 206 p~~~-~l--~sg~~Dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (496)
+-|+ +| ++...|+ ++.+.+++...+ ..
T Consensus 227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~-----------------------------------------~V 265 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV-----------------------------------------SV 265 (566)
T ss_pred cCCceEEEEEEEeecCCCccccccceEEEEEecCceE-----------------------------------------EE
Confidence 8776 22 2333333 344444431111 11
Q ss_pred eecCCCceeEEEEccCCCceEEE--EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcE
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCS--VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSV 348 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i 348 (496)
--...++|.++.|+|.+ ..|+. |-.=-.+.|||++..- +.. -.+++=+++-|+| .+++++.++-+ |.|
T Consensus 266 ~L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~---v~d--f~egpRN~~~fnp-~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP---VFD--FPEGPRNTAFFNP-HGNIILLAGFGNLPGDM 338 (566)
T ss_pred ecCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE---eEe--CCCCCccceEECC-CCCEEEEeecCCCCCce
Confidence 11246899999999999 44444 3455689999987533 333 3467779999999 88888887754 899
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC-----CCcEEEEECCC
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEK 404 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~-----dg~i~iwd~~~ 404 (496)
-+||..+ .+.+..+.... -+-+.|+|+|++++.+... |+.++||+...
T Consensus 339 EvwDv~n------~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 339 EVWDVPN------RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEeccc------hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999998 57777776533 4568999999987633333 88899999976
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=2.9e-08 Score=90.07 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=114.1
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe---cCCC
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG---GKDK 218 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg---~~Dg 218 (496)
.+..+.++| .+.+||.+..+....++++..... ..++......... -+++.|..+......+ +...
T Consensus 64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~--------~~kl~~~~~v~~~--~~ai~~~~~~~sv~v~dkagD~~ 132 (390)
T KOG3914|consen 64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPK--------GAKLLDVSCVPKR--PTAISFIREDTSVLVADKAGDVY 132 (390)
T ss_pred cccccccCC-CceEEEEEeCCCceEEEEEecCCC--------cceeeeEeecccC--cceeeeeeccceEEEEeecCCce
Confidence 344555666 889999999988888888876632 1123333333332 2455555444433333 3344
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.+.+|....+ ....+.+|-..+++|+|+||+ .+++++.
T Consensus 133 ~~di~s~~~~-----------------------------------------~~~~~lGhvSml~dVavS~D~-~~IitaD 170 (390)
T KOG3914|consen 133 SFDILSADSG-----------------------------------------RCEPILGHVSMLLDVAVSPDD-QFIITAD 170 (390)
T ss_pred eeeeeccccc-----------------------------------------CcchhhhhhhhhheeeecCCC-CEEEEec
Confidence 4445544321 114456899999999999999 8999999
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
.|..|++-....... ......+|..-|..++.-+ ++.|++||.|++|++||+++ ++.++++.
T Consensus 171 RDEkIRvs~ypa~f~-IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s------gk~L~t~d 232 (390)
T KOG3914|consen 171 RDEKIRVSRYPATFV-IESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS------GKLLDTCD 232 (390)
T ss_pred CCceEEEEecCcccc-hhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc------CCcccccc
Confidence 999999987765441 2223458999999999986 56799999999999999999 77777664
No 281
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.92 E-value=1.2e-09 Score=104.51 Aligned_cols=247 Identities=15% Similarity=0.268 Sum_probs=156.2
Q ss_pred CCCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEec-
Q 010997 139 HPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG- 215 (496)
Q Consensus 139 h~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~- 215 (496)
-...+.|+++.-. +..+++.|..+|.|.+-.+...... .-....+|.. ..++++|++- .+.||.|-
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar-~Ct~lAwneLDtn~LAagld 123 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----------SAEVTPGYAR-PCTSLAWNELDTNHLAAGLD 123 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc----------cceecccccc-cccccccccccHHHHHhhhh
Confidence 3445777776553 3468999999999999887655211 1123345554 6899999985 45677663
Q ss_pred ---CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCC
Q 010997 216 ---KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSA 291 (496)
Q Consensus 216 ---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~ 291 (496)
.|..+.|||+.+.... |... ..+. +......+++|-.+.
T Consensus 124 khrnds~~~Iwdi~s~ltv----Pke~--------------------------------~~fs~~~l~gqns~cwlrd~- 166 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLTV----PKES--------------------------------PLFSSSTLDGQNSVCWLRDT- 166 (783)
T ss_pred hhcccCCccceecccccCC----Cccc--------------------------------cccccccccCccccccccCc-
Confidence 4678999999865321 1000 0111 123445588898766
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe-CCCCCCCCCCCCceEecc
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd-~~~~~~~~~~~~~~~~~~ 370 (496)
.++++|.....++++|+|... .......+..+..+..+|..++++++-. ||.|.+|| .++.+ .++..+..
T Consensus 167 klvlaGm~sr~~~ifdlRqs~---~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-----npl~~i~~ 237 (783)
T KOG1008|consen 167 KLVLAGMTSRSVHIFDLRQSL---DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-----NPLQIILR 237 (783)
T ss_pred chhhcccccchhhhhhhhhhh---hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc-----cHHHHHhh
Confidence 788999999999999999543 1122234456677888998889988876 99999999 55532 34444432
Q ss_pred CC----CCEEEEEEcCCCCCEEEEEeCC-CcEEEEECCCCCcccCCCCCCC-CCCCeeEEEecCCCCCcceEEecCCC
Q 010997 371 HS----AAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNASD 442 (496)
Q Consensus 371 h~----~~i~~l~~sp~~~~llas~~~d-g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~ 442 (496)
.. ..+..++|+|....++++...| ++|+++|+...+.+........ ......-+++.+..+.|..+.||+..
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCC
Confidence 22 2489999999877777777664 7899999977533222111100 00001112334445678888888765
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.91 E-value=9.9e-09 Score=87.64 Aligned_cols=220 Identities=14% Similarity=0.223 Sum_probs=127.2
Q ss_pred EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 191 l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
..+|.+-.+..+.+..+ ..|+++..++.+......++.+...... .....+
T Consensus 31 i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~r----------------------------t~~i~~ 81 (319)
T KOG4714|consen 31 IMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWER----------------------------DDGIDP 81 (319)
T ss_pred cccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhc----------------------------ccCcCc
Confidence 34444433555555433 3567777777777766554433211111 011223
Q ss_pred eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-----C
Q 010997 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-----D 345 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-----d 345 (496)
...+..|+++-.+-..+-.+ +.++++..||.+.+++.+.... ...........--+.+... .++.+.++.. -
T Consensus 82 ~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLA-LMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQ 158 (319)
T ss_pred eeeeeccCCCCCcccccccC-CceEecCCCceEEEEechHHHh-hhhhcccccccccccceee-cccEEecCCcceEeec
Confidence 34444444433222222233 5699999999999999876321 1111111111111222222 3444444332 2
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
+..+.|+++..+ ..+.... ....|++++-+|..++++++|+.||.+.+||.+... .+...
T Consensus 159 d~~~a~~~~p~~-----t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------------~p~S~ 218 (319)
T KOG4714|consen 159 DNFYANTLDPIK-----TLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--------------MPVSL 218 (319)
T ss_pred cceeeecccccc-----ccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc--------------chHHH
Confidence 345566666422 1111111 223499999999999999999999999999998851 22334
Q ss_pred ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+..|..+|+.+.|+|..+--+.++++| |.+.-||-+.
T Consensus 219 l~ahk~~i~eV~FHpk~p~~Lft~sed-------Gslw~wdas~ 255 (319)
T KOG4714|consen 219 LKAHKAEIWEVHFHPKNPEHLFTCSED-------GSLWHWDAST 255 (319)
T ss_pred HHHhhhhhhheeccCCCchheeEecCC-------CcEEEEcCCC
Confidence 578999999999999987777777766 9999999873
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=4.2e-07 Score=98.34 Aligned_cols=224 Identities=12% Similarity=0.179 Sum_probs=133.3
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec------C-CCCcceeeeecC-CCCceEEe
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG------H-QDNAEFALAMCP-TEPYVLSG 214 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~------h-~~~~v~~l~~~p-~~~~l~sg 214 (496)
...+++.++++.++++-.....|+++|+.++... .+.+.. .....+.+ . -. .-+.++++| ++..+++.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G--~~g~~~~gg~~~~~~~ln-~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNG--TKGSDYQGGKKGTSQVLN-SPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccC--cccCCCCCChhhhHhhcC-CCeEEEEecCCCeEEEEE
Confidence 4678888843334455555678999998765211 000000 00000000 0 01 125789999 46667777
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.++.|++||..++....... . +.....+... .....-.....|+++|++..++
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G---------~------------G~~~~~~g~~-----~~~~~~~~P~GIavspdG~~LY 755 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSG---------D------------GYERNLNGSS-----GTSTSFAQPSGISLSPDLKELY 755 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEec---------C------------CccccCCCCc-----cccccccCccEEEEeCCCCEEE
Confidence 888999999987653211000 0 0000000000 0001113467899999986678
Q ss_pred EEEcCCCeEEEEEccCCCcccee-----------eec--------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIK-----------VEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~-----------~~~--------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
++-+.++.|++||+.++...... .+. ..-.....+++++ ++.++++-+.++.|++||..+
T Consensus 756 VADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 756 IADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCC
Confidence 88888999999999875411100 000 0011346889999 888999999999999999876
Q ss_pred CCCCCCCCCceEecc--------------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 356 LTSNGVGSPINKFEG--------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 356 ~~~~~~~~~~~~~~~--------------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+. +.++.+ .-.....|+++++|. ++++-+.++.|++||+.+.
T Consensus 835 ------g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 835 ------KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ------Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCC
Confidence 22 222221 123567899999997 7888888999999999874
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=3e-06 Score=76.49 Aligned_cols=244 Identities=9% Similarity=0.149 Sum_probs=148.3
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEEecCC--ccccccCCc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQD--HITSSATDP 236 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iwd~~~--~~~~~~~~~ 236 (496)
+.-|++|++.+..... ... .+-.+.. ..+-|+|+|++++|.++.. +|.|..+.++. +.....
T Consensus 15 s~gI~v~~ld~~~g~l--------~~~-~~v~~~~-nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l--- 81 (346)
T COG2706 15 SQGIYVFNLDTKTGEL--------SLL-QLVAELG-NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL--- 81 (346)
T ss_pred CCceEEEEEeCccccc--------chh-hhccccC-CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe---
Confidence 5679999998652211 111 1222333 3578999999999988865 47788877763 221110
Q ss_pred cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC-Cccc
Q 010997 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPV 315 (496)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 315 (496)
........+-.-+++++++..+|.+--..|.|.++-++.. ....
T Consensus 82 -----------------------------------n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~ 126 (346)
T COG2706 82 -----------------------------------NRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP 126 (346)
T ss_pred -----------------------------------eccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence 0011112233788999999544445556789999998763 2111
Q ss_pred eeeeccCCCC----------eEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997 316 IKVEKAHDAD----------LHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (496)
Q Consensus 316 ~~~~~~~~~~----------v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~ 384 (496)
......|... +.+..+.| ++++|++.+. --.|.+|++...... ......+ ........|.|+|++
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~--~~~~~~v-~~G~GPRHi~FHpn~ 202 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLT--PADPAEV-KPGAGPRHIVFHPNG 202 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccc--ccccccc-CCCCCcceEEEcCCC
Confidence 1122245444 88999999 8888888754 246999999852100 0111122 234567899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEE
Q 010997 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 464 (496)
Q Consensus 385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~i 464 (496)
++..+..--+++|.+|............+.-...|. .+.| .....++..+++|++|.||--.. ..|-+
T Consensus 203 k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~----dF~g-~~~~aaIhis~dGrFLYasNRg~-------dsI~~ 270 (346)
T COG2706 203 KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE----DFTG-TNWAAAIHISPDGRFLYASNRGH-------DSIAV 270 (346)
T ss_pred cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc----ccCC-CCceeEEEECCCCCEEEEecCCC-------CeEEE
Confidence 987767777999999999874222211111000110 1112 23567889999999888764333 58888
Q ss_pred eecCC
Q 010997 465 WRMSD 469 (496)
Q Consensus 465 w~~~~ 469 (496)
|.+..
T Consensus 271 f~V~~ 275 (346)
T COG2706 271 FSVDP 275 (346)
T ss_pred EEEcC
Confidence 88764
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=8.7e-09 Score=96.77 Aligned_cols=173 Identities=22% Similarity=0.311 Sum_probs=118.7
Q ss_pred eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997 189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
..+.||+. .|..++--.+.+-+++++.|++|++|.++..... ..+.
T Consensus 729 ~nf~GH~~-~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------------------------------~~ts 774 (1034)
T KOG4190|consen 729 CNFTGHQE-KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------------------------------IGTS 774 (1034)
T ss_pred ecccCcHH-HhHHHHhcccccceeeccCCceEEEEEeccccCc---------------------------------cccc
Confidence 46789988 5788877777888999999999999998743211 1122
Q ss_pred CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-CCcEE-EEEcCCC
Q 010997 269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLI-LTGSADN 346 (496)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l-~sgs~dg 346 (496)
....++..|+.+|.++.|-.+. ..+++ .||.|++||.--++...........+.+..+.--|. +..++ |.++...
T Consensus 775 aCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeS 851 (1034)
T KOG4190|consen 775 ACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAES 851 (1034)
T ss_pred eeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchh
Confidence 2346788999999999998776 45555 489999999766552110111112223333333231 33444 4447889
Q ss_pred cEEEEeCCCCCCCCCCCCceEec-----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+|+++|.|. +.-...++ +....+.+++..|.|.. +|.+-..|.|.+.|.+++
T Consensus 852 TVKl~DaRs------ce~~~E~kVcna~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 852 TVKLFDARS------CEWTCELKVCNAPGPNALTRAIAVADKGNK-LAAALSNGCIAILDARNG 908 (1034)
T ss_pred hheeeeccc------ccceeeEEeccCCCCchheeEEEeccCcch-hhHHhcCCcEEEEecCCC
Confidence 999999998 55444443 33456889999999997 578888999999999884
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.86 E-value=7.4e-07 Score=94.70 Aligned_cols=270 Identities=16% Similarity=0.234 Sum_probs=158.0
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-------------cc----------ccCCCCC-------CCCc
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN-------------RH----------AVLGATN-------SRPD 188 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~-------------~~----------~~~~~~~-------~~~~ 188 (496)
-.+.|.+++||| |..+||..+.+|+|.+-+..-... ++ .+.|... ..+.
T Consensus 119 vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 457899999999 888999999888887764321110 00 0111100 0011
Q ss_pred ------eEEecCCCCcceeeeecCCCCceEEecC------CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCC
Q 010997 189 ------LILTGHQDNAEFALAMCPTEPYVLSGGK------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG 256 (496)
Q Consensus 189 ------~~l~~h~~~~v~~l~~~p~~~~l~sg~~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (496)
..+. +.+. -..++|..||.|+|+.+. -+.||||+-+ +.......
T Consensus 198 ~~~~d~~~~s-~dd~-~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--------------------- 253 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDG-RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--------------------- 253 (928)
T ss_pred CCccccCccc-cCCC-ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc---------------------
Confidence 1122 2232 358999999999997764 2589999876 22111100
Q ss_pred CCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC---CCeEEEEEccCCCccceeee--ccCCCCeEEEEe
Q 010997 257 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVE--KAHDADLHCVDW 331 (496)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~ 331 (496)
.-.+--.+++|.|.| +++|+... ...|.+|.- +|-..-...+ ......|..+.|
T Consensus 254 -------------------~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 254 -------------------PVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred -------------------cCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEE
Confidence 111122467999999 77777653 345666653 3321111222 245678999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC-CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC---Cc
Q 010997 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV---GK 407 (496)
Q Consensus 332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~---~~ 407 (496)
++ ++..||..-.|. |.+|-..+.. +..-+.+... ...+..+.|+|....-|...+.+|.+..+++.-. +.
T Consensus 313 n~-ds~iLAv~~~~~-vqLWt~~NYH----WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 313 NS-DSEILAVWLEDR-VQLWTRSNYH----WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred CC-CCCEEEEEecCC-ceEEEeeCCE----EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence 99 999999977665 9999988733 3333344322 3345569999988776667776677766554321 00
Q ss_pred cc----------------CCCC-CCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 408 KV----------------EQGP-RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 408 ~~----------------~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.. ...+ .....||......-.....|.+++|++++..+++- .. ||.|.+|...
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl-~~-------d~~l~~~~~~ 456 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL-TS-------DGSLSIYEWD 456 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE-EC-------CCCEEEEEec
Confidence 00 0000 11123333333333345789999999987654433 32 4899999865
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=2.1e-06 Score=83.75 Aligned_cols=195 Identities=11% Similarity=-0.005 Sum_probs=114.1
Q ss_pred cceeeeecCCCCc-eEEecC---CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997 198 AEFALAMCPTEPY-VLSGGK---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (496)
Q Consensus 198 ~v~~l~~~p~~~~-l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (496)
......|+|+|+. ++..+. +..|.++|+.++.. ..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------------------------------------~~ 227 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----------------------------------------EK 227 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----------------------------------------EE
Confidence 4568899999984 554333 35688888865432 22
Q ss_pred eecCCCceeEEEEccCCCceEEEEcCC--CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-CCC--cE
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADN--SV 348 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg--~i 348 (496)
+....+......|+|+|..++++.+.+ ..|.++|+..+. ...+..+........|+| ++..|+..+ ..| .|
T Consensus 228 lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 228 IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNI 303 (419)
T ss_pred EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECC-CCCEEEEEECCCCCceE
Confidence 323344556678999996666666544 457777877665 222223333334568999 787665554 334 57
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC--------CcEEEEECCCCCcccCCCCCCCCCCC
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPA 420 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~ 420 (496)
.+.|+.. +.. ..+...... ...|+|+|+.|+.++... ..|.+.|+.... .
T Consensus 304 y~~dl~~------g~~-~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-------------~ 361 (419)
T PRK04043 304 FMKKLNS------GSV-EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-------------I 361 (419)
T ss_pred EEEECCC------CCe-EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-------------e
Confidence 7777765 332 222211111 248999999876666543 357777876631 1
Q ss_pred eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
..+. .. .......|+|+|..++.+... +....|.+.++.
T Consensus 362 ~~LT---~~-~~~~~p~~SPDG~~I~f~~~~-----~~~~~L~~~~l~ 400 (419)
T PRK04043 362 RRLT---AN-GVNQFPRFSSDGGSIMFIKYL-----GNQSALGIIRLN 400 (419)
T ss_pred EECC---CC-CCcCCeEECCCCCEEEEEEcc-----CCcEEEEEEecC
Confidence 1111 11 123358899999887766432 223456666766
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.83 E-value=5.3e-06 Score=75.44 Aligned_cols=227 Identities=10% Similarity=0.089 Sum_probs=139.1
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec-CCCCceEEecCCCcEEEE
Q 010997 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-PTEPYVLSGGKDKSVVLW 223 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~-p~~~~l~sg~~Dg~i~iw 223 (496)
...|.+.++.++++-...+.|..|+..+.. . ..+... ...++++. +++. |+.+..+ .+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~------------~-~~~~~~---~~~G~~~~~~~g~-l~v~~~~-~~~~~ 65 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE------------V-EVIDLP---GPNGMAFDRPDGR-LYVADSG-GIAVV 65 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE------------E-EEEESS---SEEEEEEECTTSE-EEEEETT-CEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe------------E-EEEecC---CCceEEEEccCCE-EEEEEcC-ceEEE
Confidence 467787778888888889999999998772 1 111111 14577777 5654 4445544 44555
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--c-CCCceeEEEEccCCCceEEEEcCC
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--G-HEDTVEDVTFCPSSAQEFCSVGDD 300 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~l~~~~~~~~~l~s~~~d 300 (496)
|..++.... +.... . .....+++++.|+| ++.++....
T Consensus 66 d~~~g~~~~--------------------------------------~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~ 106 (246)
T PF08450_consen 66 DPDTGKVTV--------------------------------------LADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGG 106 (246)
T ss_dssp ETTTTEEEE--------------------------------------EEEEETTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred ecCCCcEEE--------------------------------------EeeccCCCcccCCCceEEEcCCC-CEEEEecCC
Confidence 877643211 11111 1 34578999999999 566665543
Q ss_pred --------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCC-CCCCCceEecc
Q 010997 301 --------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSN-GVGSPINKFEG 370 (496)
Q Consensus 301 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~-~~~~~~~~~~~ 370 (496)
|.|..++.. ++ .......-...+.|+|+| ++..| ++-+..+.|..+|+...... .....+..+..
T Consensus 107 ~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 181 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG 181 (246)
T ss_dssp BCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred CccccccccceEEECCC-Ce---EEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence 557777766 33 222223456679999999 77655 57778889999999753210 00011222333
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe-cCCCCcEEEEe
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW-NASDPWTVVSV 449 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~p~~~~l~~s~ 449 (496)
..+..-.+++..+|. |+++....+.|.++|... .++....--...+++++| -++...|+++.
T Consensus 182 ~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G----------------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 182 GPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG----------------KLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS----------------CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc----------------cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 233478999999997 676766788999999773 233333322447899999 46667777765
Q ss_pred c
Q 010997 450 S 450 (496)
Q Consensus 450 s 450 (496)
+
T Consensus 245 a 245 (246)
T PF08450_consen 245 A 245 (246)
T ss_dssp B
T ss_pred C
Confidence 4
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=6.3e-06 Score=80.45 Aligned_cols=194 Identities=9% Similarity=0.043 Sum_probs=111.6
Q ss_pred CceeEEEecCCCCc-EEEEEeC---CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-Eec
Q 010997 141 GEVNRIRELPQNTK-IVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGG 215 (496)
Q Consensus 141 ~~V~~l~~~p~~~~-~lat~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~ 215 (496)
+.+..-+|+| +++ +++..+. +..|+++|+.++. ... +....+ ......|+|||+.|+ +.+
T Consensus 188 ~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~------------~~~-lt~~~g-~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 188 GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGK------------KEK-IASSQG-MLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCc------------EEE-EecCCC-cEEeeEECCCCCEEEEEEc
Confidence 4677889999 665 3554333 3579999998772 111 222222 345678999998655 444
Q ss_pred CC--CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 216 KD--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 216 ~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
.+ ..|.++|+.++.. ..+..+........|+|+|..+
T Consensus 253 ~~g~~~Iy~~dl~~g~~-----------------------------------------~~LT~~~~~d~~p~~SPDG~~I 291 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTL-----------------------------------------TQITNYPGIDVNGNFVEDDKRI 291 (419)
T ss_pred cCCCcEEEEEECCCCcE-----------------------------------------EEcccCCCccCccEECCCCCEE
Confidence 44 4566667654321 1222222223345799999666
Q ss_pred EEEEcCCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---------CcEEEEeCCCCCCCCCC
Q 010997 294 FCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVG 362 (496)
Q Consensus 294 l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~ 362 (496)
+++....+ .|.++|+.++.. ...... .. ....|+| ++..|+..+.. ..|.+.|+.. +
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~-g~--~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~------g 359 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGSV--EQVVFH-GK--NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNS------D 359 (419)
T ss_pred EEEECCCCCceEEEEECCCCCe--EeCccC-CC--cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCC------C
Confidence 66654444 577777776652 122111 11 1248999 88877665543 2678888776 3
Q ss_pred CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCC
Q 010997 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEK 404 (496)
Q Consensus 363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~ 404 (496)
....+... .......|+|||+.|+.+....+. +.+.++..
T Consensus 360 -~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 360 -YIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred -CeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 23444432 233368899999977655544444 44555543
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=5.1e-08 Score=88.51 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=98.7
Q ss_pred eeEEEEccCCCceEEEEcCCCeEEEEEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
...+..++.+ .+++.+..+....+++++.... ...... .-...-+++.|.. .......+..-|.++-+|+-+..+
T Consensus 65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeee-ccceEEEEeecCCceeeeeecccc
Confidence 3445566666 7788887777777777766542 111111 1222334444444 334444444444444444433211
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
.+...+-+|-.-++.|+|+||+++| +++..|..|+|-.+.... ..-.-.-||..-|..++.
T Consensus 142 ----~~~~~~lGhvSml~dVavS~D~~~I-itaDRDEkIRvs~ypa~f--------------~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 142 ----GRCEPILGHVSMLLDVAVSPDDQFI-ITADRDEKIRVSRYPATF--------------VIESFCLGHKEFVSTISL 202 (390)
T ss_pred ----cCcchhhhhhhhhheeeecCCCCEE-EEecCCceEEEEecCccc--------------chhhhccccHhheeeeee
Confidence 2344456899999999999999865 599999999997776531 011113589999999999
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
-++.. |+ |||.|++|++||+.
T Consensus 203 ~~~~~-Ll--------S~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 203 TDNYL-LL--------SGSGDKTLRLWDIT 223 (390)
T ss_pred ccCce-ee--------ecCCCCcEEEEecc
Confidence 87543 44 77778999999998
No 291
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.81 E-value=2.5e-06 Score=80.07 Aligned_cols=236 Identities=13% Similarity=0.170 Sum_probs=138.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
-.-++..+++|| .|.+|++.... .|.+|+-.... ...-.-|.+ |.-+.|+|.++||.+=+..+
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~~-------------~l~~~~~~~--V~~~~fSP~~kYL~tw~~~p 93 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSKA-------------KLVRFRHPD--VKYLDFSPNEKYLVTWSREP 93 (561)
T ss_pred cCcchhheeecC-cchheehhhcc-ceEEccccchh-------------heeeeecCC--ceecccCcccceeeeeccCC
Confidence 345788999999 89999887665 69999887662 112223444 89999999999999865433
Q ss_pred ---------------cEEEEecCCccccccCCccccccCCCCCceeccCC------CCCCCCCCCCC---CCCcCCeeee
Q 010997 219 ---------------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP------KPGDGNDKAAD---GPSVGPRGIY 274 (496)
Q Consensus 219 ---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~ 274 (496)
.+.+||+.++.............. ...+..+.. ......+.+.+ .....+...+
T Consensus 94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~--~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL--GWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred ccChhhccCCccccCceeEEeccCceeEeeccccCCccc--ccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc
Confidence 499999998755433322111100 000000000 00111111111 1111122222
Q ss_pred ecCCCceeEEEEccCCC-ceEEE-----EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-----
Q 010997 275 NGHEDTVEDVTFCPSSA-QEFCS-----VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS----- 343 (496)
Q Consensus 275 ~~h~~~v~~l~~~~~~~-~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs----- 343 (496)
. ...|.+..|+|.+. ..|+. .+.++.+++|.+.... .+.+..-....=..+.|++ .+.+|+.--
T Consensus 172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~k 246 (561)
T COG5354 172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTK 246 (561)
T ss_pred c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEeecccEEEEec-CCceEEEEEEEeee
Confidence 2 35688889999742 23443 4567899999998655 2222112223335678888 666554321
Q ss_pred ------CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEE-EEEeCCCcEEEEECCCC
Q 010997 344 ------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF-GSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 344 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~ll-as~~~dg~i~iwd~~~~ 405 (496)
....+.|++++. ..+.....-.++|...+|.|.+..+. ++|-.+-.+.++|++..
T Consensus 247 snKsyfgesnLyl~~~~e-------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 247 SNKSYFGESNLYLLRITE-------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred cccceeccceEEEEeecc-------cccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 124678888885 23333335688999999999887632 34456889999999873
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=1.8e-06 Score=75.61 Aligned_cols=202 Identities=12% Similarity=0.142 Sum_probs=110.2
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC------CceEEecC
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE------PYVLSGGK 216 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~------~~l~sg~~ 216 (496)
=..++|+| ++.+||.+...|+|++||+...... .+ .+...+.+--..+|-+|.|.+.. ..|+.-..
T Consensus 46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I------~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI------PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred heEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec------CcccccCCccccceeeeEeeccccccccceeEEEEec
Confidence 46789999 8899999999999999999864211 11 11111222222356677665432 14666666
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~ 295 (496)
+|.++-+-+..+...... ......+.. +...|+++.++|.. ++|+
T Consensus 118 ~G~L~Sy~vs~gt~q~y~---------------------------------e~hsfsf~~~yp~Gi~~~vy~p~h-~LLl 163 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQGYQ---------------------------------ENHSFSFSSHYPHGINSAVYHPKH-RLLL 163 (282)
T ss_pred cceeeeEEEEcccCCcce---------------------------------eeEEEEecccCCCceeEEEEcCCC-CEEE
Confidence 777777765322110000 000122222 46789999999998 5666
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCc------EEEEeCCCCCCCCCCCCceEe
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNS------VRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~------i~iwd~~~~~~~~~~~~~~~~ 368 (496)
.||.... ..+. ..+....+++-..-.....+. ++...|+. -.+|.+-+ .......
T Consensus 164 VgG~~~~------~~~~------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~------~~~fs~~ 225 (282)
T PF15492_consen 164 VGGCEQN------QDGM------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS------FKFFSRQ 225 (282)
T ss_pred EeccCCC------CCcc------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc------eeeeecc
Confidence 5554322 0000 012223333332221112222 22222221 12232222 1111111
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
......|..|..||+|. +||+...+|.|.+|++...
T Consensus 226 ~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcc
Confidence 23467899999999999 6789999999999999874
No 293
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.75 E-value=3.7e-06 Score=86.96 Aligned_cols=236 Identities=16% Similarity=0.289 Sum_probs=135.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
+.|.++.|.- +++-++.+..+|.|.+-|.++. ...+.|..+..|.+++|+||+..++-.+.++++
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~--------------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETL--------------ELEIVGNVDNGISAASWSPDEELLALITGRQTL 133 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEccccc--------------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEE
Confidence 5799999988 7777888888999999888776 234555555679999999999998888877887
Q ss_pred EEEecC----Ccccc-ccCCccccccCCCCCc--eeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCC
Q 010997 221 VLWSIQ----DHITS-SATDPATAKSAGSSGS--IIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSA 291 (496)
Q Consensus 221 ~iwd~~----~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~ 291 (496)
.+-+-. ..+.. ............+.+. .... .+.+..... ........+. .-.+.=+.|.|--+|
T Consensus 134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr---gs~gr~~~~--~~~~~ek~~~~~~~~~~~~~IsWRgDg- 207 (1265)
T KOG1920|consen 134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR---GSEGRQAAR--QKIEKEKALEQIEQDDHKTSISWRGDG- 207 (1265)
T ss_pred EEEeccccchhccccccccccccccceecccccceeee---cchhhhccc--ccccccccccchhhccCCceEEEccCC-
Confidence 775431 00000 0000000000000000 0000 000000000 0000000000 011222468999888
Q ss_pred ceEEEE-----cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc---CCCcEEEEeCCCCCCCCCCC
Q 010997 292 QEFCSV-----GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 292 ~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~ 363 (496)
.+|++. .....|++||-. +. .-.........-.+++|-| .|.++|+-. .|+.|.+|..+-+.. +.
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~h---g~ 280 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRH---GE 280 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccc---cc
Confidence 677762 233799999976 43 2222223334456899999 899988753 456799998665432 22
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEE---EeCCCcEEEEECCCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLLNIWDYEKV 405 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas---~~~dg~i~iwd~~~~ 405 (496)
....+......|..++|+.++. +||. ......|++|-+...
T Consensus 281 f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 2222333344599999999988 6666 455556999998763
No 294
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.73 E-value=3e-06 Score=78.82 Aligned_cols=173 Identities=15% Similarity=0.173 Sum_probs=130.2
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC-cEEEEecC
Q 010997 148 ELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK-SVVLWSIQ 226 (496)
Q Consensus 148 ~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg-~i~iwd~~ 226 (496)
|++.+++++|..|. |.+.|.+...+. ..--+|.. .|.-..+..+++-++.|..|| .+-|+|.+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~--------------~iqv~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~ 390 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGY--------------SIQVGKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKD 390 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCe--------------eEEcCCCC-ceEEEEEccCCcceEEeccCCceEEEEecC
Confidence 55668889988876 678887766551 11224444 477777777777899999999 99999998
Q ss_pred CccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEE
Q 010997 227 DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 306 (496)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 306 (496)
++.. ..+...-+.|.++..+++| ..++.+.+...|-++
T Consensus 391 ~~e~-----------------------------------------kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vi 428 (668)
T COG4946 391 GGEV-----------------------------------------KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVI 428 (668)
T ss_pred CceE-----------------------------------------EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEE
Confidence 6543 4556667889999999999 778888888999999
Q ss_pred EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC----cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC
Q 010997 307 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382 (496)
Q Consensus 307 d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 382 (496)
|+.++. ....-+...+-|+.++|+| ++.++|-+--+| .|+++|+.. ..+.......+.=.+-+|.|
T Consensus 429 didngn--v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~-------~Kiy~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 429 DIDNGN--VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG-------GKIYDVTTPTAYDFSPAFDP 498 (668)
T ss_pred EecCCC--eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC-------CeEEEecCCcccccCcccCC
Confidence 999998 3444445667899999999 999999988776 589999986 33444444444445667888
Q ss_pred CCCCEE
Q 010997 383 DKSSVF 388 (496)
Q Consensus 383 ~~~~ll 388 (496)
++++|.
T Consensus 499 d~ryLY 504 (668)
T COG4946 499 DGRYLY 504 (668)
T ss_pred CCcEEE
Confidence 888754
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=4.8e-08 Score=86.86 Aligned_cols=155 Identities=21% Similarity=0.335 Sum_probs=111.8
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
++.+.+..|-+-|+.++. ...+ ...+.|.++.|.. .++++..|..+|.|..+|+|.... +.+.+.+.+. |.+.
T Consensus 228 fs~G~sqqv~L~nvetg~---~qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnq-G~~~~a~rly-h~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH---QQSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQ-GNGWCAQRLY-HDSS 300 (425)
T ss_pred ecccccceeEEEEeeccc---cccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeeccc-CCCcceEEEE-cCcc
Confidence 566677889999998876 2333 3678899999998 799999999999999999998432 2245555554 8999
Q ss_pred EEEEEEcC-CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc--eEEecCCCCcEEEEecC
Q 010997 375 VLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWNASDPWTVVSVSD 451 (496)
Q Consensus 375 i~~l~~sp-~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~~~~~p~~~~l~~s~s~ 451 (496)
|+++..-. ++++| .+.+.+|.|++||++..... .-+.+..||...-. -+..++.. .+++++++
T Consensus 301 vtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~------------~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~Gd 366 (425)
T KOG2695|consen 301 VTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCK------------KSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGD 366 (425)
T ss_pred hhhhhhhccccceE-eeccCcCceeEeeehhhhcc------------cceeeeeccccccccccccccccc-ceEEEccC
Confidence 99998877 56655 57778999999999985221 23566778865332 33445544 45555555
Q ss_pred CCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997 452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 483 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~ 483 (496)
| -..+||.+. .+.++.+++
T Consensus 367 D-------cytRiWsl~------~ghLl~tip 385 (425)
T KOG2695|consen 367 D-------CYTRIWSLD------SGHLLCTIP 385 (425)
T ss_pred e-------eEEEEEecc------cCceeeccC
Confidence 4 799999999 566666665
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=1e-07 Score=92.50 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=125.9
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
...|++|+....|++.|+.||.+++-.+.+........+ +....+...-+++.+|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------------------laa~snLsmNQtLeGH 70 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------------------LAAASNLSMNQTLEGH 70 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------------------------cccccccchhhhhccC
Confidence 368999999999999999999999999876533221111 1111223334788999
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
...|.-+.|+... +.|.|...+|.|.+|-+-.+.......-....+-|.+++|+. +|..++....||.|.+=.+.-
T Consensus 71 ~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdG-- 146 (1189)
T KOG2041|consen 71 NASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDG-- 146 (1189)
T ss_pred cceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecc--
Confidence 9999999999887 789999999999999998877422223334567889999999 999999999999888766553
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
..+.--.-.......+.|++|.+.+| .+-..|.+++||...
T Consensus 147 -----NRIwgKeLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnqg 187 (1189)
T KOG2041|consen 147 -----NRIWGKELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQG 187 (1189)
T ss_pred -----ceecchhcchheccceeecccHHHHH-hhhcCCcEEEecccc
Confidence 22221111122345789999998654 666789999999875
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.2e-06 Score=86.68 Aligned_cols=187 Identities=17% Similarity=0.225 Sum_probs=129.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
..+.+.|++++ +++||-|+.+|.|++++..... .+...|... .-+|.+++||+.||
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--------------~~~~~~s~~-------~~~Gey~asCS~DG 93 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--------------KTNFDHSSS-------ILEGEYVASCSDDG 93 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc--------------ccccccccc-------ccCCceEEEecCCC
Confidence 45678888874 5789999999999999987652 222334331 45799999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC----CCceE
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS----SAQEF 294 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l 294 (496)
+|.|-.+-+.... . -.....++.+++++|+ ....|
T Consensus 94 kv~I~sl~~~~~~----------------------------------------~-~~df~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 94 KVVIGSLFTDDEI----------------------------------------T-QYDFKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred cEEEeeccCCccc----------------------------------------e-eEecCCcceeEEeccchhhhhhhhe
Confidence 9999887654321 1 1123568899999997 23579
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA- 373 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~- 373 (496)
++||.-| +.++.-+--............++|.++.| .++++|=++.+| |++||+.. ...+..+.....
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~------~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPT------RQRLTNIPPPSQS 201 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccc------cceeeccCCCCCC
Confidence 9999988 77775432211112234567899999999 579999998888 99999987 444444432222
Q ss_pred -----CEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 374 -----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 374 -----~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
--..+.|.++.. |+.| ...+|+|..++.
T Consensus 202 ~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence 234688888765 3344 455799999883
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.69 E-value=1.6e-05 Score=74.06 Aligned_cols=265 Identities=13% Similarity=0.109 Sum_probs=154.4
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSP-DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
-.++|.+.|.-.++.. +++-++.|..|| .+-|+|..+++. ..+...-+ .|.++..+++|++++.
T Consensus 354 iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-------------kr~e~~lg-~I~av~vs~dGK~~vv 418 (668)
T COG4946 354 IQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-------------KRIEKDLG-NIEAVKVSPDGKKVVV 418 (668)
T ss_pred EEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-------------EEeeCCcc-ceEEEEEcCCCcEEEE
Confidence 3468899998888887 666888999999 899999998831 23334444 4899999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
+.....|.+.|++++... ..-....+-|+++.|||++ ..
T Consensus 419 aNdr~el~vididngnv~----------------------------------------~idkS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 419 ANDRFELWVIDIDNGNVR----------------------------------------LIDKSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred EcCceEEEEEEecCCCee----------------------------------------EecccccceeEEEEEcCCc-ee
Confidence 988889999999876432 1122345679999999998 67
Q ss_pred EEEEcCC----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-------CCCcEEEEeCCCCCC----
Q 010997 294 FCSVGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-------ADNSVRMFDRRNLTS---- 358 (496)
Q Consensus 294 l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-------~dg~i~iwd~~~~~~---- 358 (496)
+|-+--+ ..|+++|+..++.-.+.+..++ =.+-+|.| ++++|.--+ .|..+.=+.......
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~---DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv 533 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY---DFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLV 533 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEEEecCCccc---ccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEeeeccceEE
Confidence 7776555 4699999988772222222222 23457777 776654432 233332222221100
Q ss_pred -------CCCCCCceEeccCCCC---------EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997 359 -------NGVGSPINKFEGHSAA---------VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (496)
Q Consensus 359 -------~~~~~~~~~~~~h~~~---------i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 422 (496)
++...+........+. +.-+-.. .+.+.-+++-.+|.|.++...-.++...--......-...
T Consensus 534 ~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~ 612 (668)
T COG4946 534 VLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLE 612 (668)
T ss_pred EecCCCCChhhcCchhcCccccceehhhhcccccccccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEE
Confidence 0000011111111110 0000011 2333444666677777776654333221100000000111
Q ss_pred EEEec-----CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 423 FFQHA-----GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 423 ~~~~~-----~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.+.+. .-...|.++..|+++..+++ -+ ||.++++++..
T Consensus 613 ~ydletkk~~e~k~nvss~rlS~D~s~ilv--k~-------d~kl~~f~vek 655 (668)
T COG4946 613 KYDLETKKVEEYKDNVSSFRLSSDGSKILV--KL-------DGKLRLFDVEK 655 (668)
T ss_pred EEecchhhHHHHhcccceEEEcCCCCEEEE--Ee-------CCeEEEEeccc
Confidence 12111 12357899999999999886 33 49999999984
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.66 E-value=5e-05 Score=66.75 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=85.9
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--CcceeeeecCCCCceEEecCCCcEEEE
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGKDKSVVLW 223 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--~~v~~l~~~p~~~~l~sg~~Dg~i~iw 223 (496)
++.++ +|++||.-- |..|.|-.....-. ..+...+-+.+ ..-.-++|+||+..||.+...|+|+++
T Consensus 3 ~~~~~-~Gk~lAi~q-d~~iEiRsa~Ddf~----------si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSS-DGKLLAILQ-DQCIEIRSAKDDFS----------SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred eeecC-CCcEEEEEe-ccEEEEEeccCCch----------heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 34445 788877654 45666655443310 11112222211 123679999999999999999999999
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-----CceEEEEc
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-----AQEFCSVG 298 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~ 298 (496)
|+...... ...+... . ...-...|.+|.|.+.. ...|+...
T Consensus 71 dl~g~~lf-~I~p~~~--~-------------------------------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 71 DLMGSELF-VIPPAMS--F-------------------------------PGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred ecccceeE-EcCcccc--c-------------------------------CCccccceeeeEeeccccccccceeEEEEe
Confidence 98753221 1111000 0 00112345555554322 24677777
Q ss_pred CCCeEEEEEccCCC---cccee--eec-cCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 299 DDSCLILWDARVGT---SPVIK--VEK-AHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 299 ~dg~i~iwd~~~~~---~~~~~--~~~-~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
..|.++-|-+..+. ..... .+. .+...|+++.++| ..++|++|+..
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~ 168 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCE 168 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccC
Confidence 88888877764321 11111 122 2467999999999 67777777654
No 300
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.66 E-value=1.3e-08 Score=97.53 Aligned_cols=208 Identities=18% Similarity=0.275 Sum_probs=138.8
Q ss_pred ceeeeecCCC--CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997 199 EFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (496)
Q Consensus 199 v~~l~~~p~~--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (496)
+.|+++.-+. ..++.|..+|.|.+-.++..... .-....+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------------------------------------s~E~tp~ 100 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------------------------------------SAEVTPG 100 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccc--------------------------------------cceeccc
Confidence 5677776553 37888999999999887643221 0123446
Q ss_pred CCCceeEEEEccCCCceEEEEc----CCCeEEEEEccCCCc-cc--eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEE
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVG----DDSCLILWDARVGTS-PV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 349 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~-~~--~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~ 349 (496)
|...+++++|++-+.+.||+|- .|..+.|||+.+.-. |. .....+-....++++|.. +..++.+|.....++
T Consensus 101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVH 179 (783)
T ss_pred ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhh
Confidence 7889999999987656777773 467899999987621 11 111112445677999997 889999999999999
Q ss_pred EEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEE-CCCCCcccCCCCCCCCCCCeeEEEec
Q 010997 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWD-YEKVGKKVEQGPRTTNYPAGLFFQHA 427 (496)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (496)
++|+|. .........+..+..+...| .+.+ + +...||.|.+|| .+........ .+....
T Consensus 180 ifdlRq-------s~~~~~svnTk~vqG~tVdp~~~nY-~-cs~~dg~iAiwD~~rnienpl~~----------i~~~~N 240 (783)
T KOG1008|consen 180 IFDLRQ-------SLDSVSSVNTKYVQGITVDPFSPNY-F-CSNSDGDIAIWDTYRNIENPLQI----------ILRNEN 240 (783)
T ss_pred hhhhhh-------hhhhhhhhhhhhcccceecCCCCCc-e-eccccCceeeccchhhhccHHHH----------HhhCCC
Confidence 999995 22222222345667788888 4444 5 444599999999 4332211110 000001
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
.-...+..++|+|....++++++.| .++|+++++...
T Consensus 241 ~~~~~l~~~aycPtrtglla~l~Rd------S~tIrlydi~~v 277 (783)
T KOG1008|consen 241 KKPKQLFALAYCPTRTGLLAVLSRD------SITIRLYDICVV 277 (783)
T ss_pred CcccceeeEEeccCCcchhhhhccC------cceEEEeccccc
Confidence 1112488999999999999999888 589999998643
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.3e-06 Score=79.61 Aligned_cols=161 Identities=9% Similarity=0.114 Sum_probs=105.0
Q ss_pred CCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997 186 RPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (496)
++...+.+|.. .|..++|+|..+ +|..++.+..|+|.|+++....
T Consensus 184 kssq~lp~~g~-~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--------------------------------- 229 (463)
T KOG1645|consen 184 KSSQILPGEGS-FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--------------------------------- 229 (463)
T ss_pred chhhcccccch-hhhhhccCccccceeeeeccCceEEEEecccceee---------------------------------
Confidence 33445667766 799999999876 7889999999999999875432
Q ss_pred CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-cCCCCeEEEEecCC-----CCcE
Q 010997 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL-----DDNL 338 (496)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~-----~~~~ 338 (496)
..+..+ ..+++++|.-+..+++..|-..|.|.+||+|..+.+...... ....+|..++.-+- .+.+
T Consensus 230 -------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl 301 (463)
T KOG1645|consen 230 -------SSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL 301 (463)
T ss_pred -------eheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence 334445 689999999988889999999999999999988754332211 22344544443220 2444
Q ss_pred EEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC
Q 010997 339 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 393 (496)
Q Consensus 339 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~ 393 (496)
|+....+ +..|.+..... ...++..+. ..+...+++.++...++|+|.-.
T Consensus 302 Lv~~lt~--l~f~ei~~s~~--~~p~vlele-~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 302 LVFALTV--LQFYEIVFSAE--CLPCVLELE-PPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred EEeeehh--hhhhhhhcccc--CCCcccccC-CCcceeeeeecCccceEEEEecC
Confidence 4443332 45666554221 022223332 35566777888777777777654
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=8.4e-06 Score=81.40 Aligned_cols=204 Identities=10% Similarity=0.151 Sum_probs=132.3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC---
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--- 218 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg--- 218 (496)
.|.|+ ++ ++..+|.|+.+|.|.+.+-.-. .+..++.+..+.|..+....+..+|++.+.|+
T Consensus 27 ~isc~--~s-~~~~vvigt~~G~V~~Ln~s~~-------------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~n 90 (933)
T KOG2114|consen 27 AISCC--SS-STGSVVIGTADGRVVILNSSFQ-------------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGN 90 (933)
T ss_pred ceeEE--cC-CCceEEEeeccccEEEecccce-------------eeehheecchhhhhHhhcccCceEEEEEeecCCCC
Confidence 45554 56 6778999999999988875432 23456666664354444444446888877765
Q ss_pred --cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe---ee----eecCCCceeEEEEccC
Q 010997 219 --SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR---GI----YNGHEDTVEDVTFCPS 289 (496)
Q Consensus 219 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~h~~~v~~l~~~~~ 289 (496)
.|+||+++....... ...+ +. +.....++.+++.+.+
T Consensus 91 p~llkiw~lek~~~n~s----------------------------------P~c~~~~ri~~~~np~~~~p~s~l~Vs~~ 136 (933)
T KOG2114|consen 91 PVLLKIWDLEKVDKNNS----------------------------------PQCLYEHRIFTIKNPTNPSPASSLAVSED 136 (933)
T ss_pred ceEEEEecccccCCCCC----------------------------------cceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence 499999985321000 0001 11 1123567888999888
Q ss_pred CCceEEEEcCCCeEEEEEcc--CCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC-ce
Q 010997 290 SAQEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-IN 366 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~ 366 (496)
- ..+|+|-.+|.|..+.-. ..+............+|+.+++.. ++..++-+..-..|.+|.+.. ..+ +.
T Consensus 137 l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~g------r~p~~~ 208 (933)
T KOG2114|consen 137 L-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSG------RTPSLK 208 (933)
T ss_pred c-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecC------CCccee
Confidence 6 789999999999998421 111112223334568999999987 666533333455799999885 233 44
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.+..|...+.|..|++....++ +++ +..+.+||....
T Consensus 209 ~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 209 VLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGR 245 (933)
T ss_pred eeccCCccceeeecCCCCccEE-Eec-CceEEEEcCCCc
Confidence 5788889999999998766555 444 456999998864
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=9.7e-08 Score=58.84 Aligned_cols=38 Identities=34% Similarity=0.860 Sum_probs=34.8
Q ss_pred CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd 401 (496)
+++.++.+|...|++|+|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788999999999999999987 578999999999997
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.60 E-value=1.3e-06 Score=87.46 Aligned_cols=186 Identities=10% Similarity=0.185 Sum_probs=131.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
++..++-|+-...+..+|+.+. +......-... .|+-++. ++++|.+|...|+|.+-|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~------------~e~r~~~v~a~-~v~imR~--Nnr~lf~G~t~G~V~LrD~~s---- 206 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE------------KETRTTNVSAS-GVTIMRY--NNRNLFCGDTRGTVFLRDPNS---- 206 (1118)
T ss_pred CCcceeecchhhheeeeecccc------------eeeeeeeccCC-ceEEEEe--cCcEEEeecccceEEeecCCc----
Confidence 4456667777778888888876 22222222222 3555554 578899999999999998864
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC---------CCe
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---------DSC 302 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------dg~ 302 (496)
.+.++.+..|++.|.++... | ++|++||. |..
T Consensus 207 ------------------------------------~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~F 247 (1118)
T KOG1275|consen 207 ------------------------------------FETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPF 247 (1118)
T ss_pred ------------------------------------Cceeeeeeccccceeeeecc--C-CeEEEeecccccccccccch
Confidence 34458899999999988765 4 78888875 567
Q ss_pred EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC
Q 010997 303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382 (496)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 382 (496)
|+|||+|..+ .+....-+. ...-+.|.|.-...+++.+..|...+-|....... ...+..+......+..+.+|+
T Consensus 248 vkVYDLRmmr--al~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 248 VKVYDLRMMR--ALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred hhhhhhhhhh--ccCCccccc-CchhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecC
Confidence 8999999877 233332222 23567888866788999999999999995443310 122333344456699999999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 010997 383 DKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 383 ~~~~llas~~~dg~i~iwd 401 (496)
++. .+|-|..+|.|.+|-
T Consensus 323 n~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 NGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCc-eEEEecccCcEeeec
Confidence 999 578999999999998
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=5.7e-07 Score=82.89 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=151.4
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
..-|.+.|+.+... -.+++.+++.||.++.|--.... -...+..+..|.. .|.+++.+-++.++.|++
T Consensus 5 symhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~is---------GvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~ 72 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRIS---------GVEFVKHFRAHLG-VILSLAVSYDGWLFRSVE 72 (558)
T ss_pred hhcccceeeeEeee--hhheEEeeecchhhhhcCCCCcc---------ceeehhhhHHHHH-HHHhhhccccceeEeecc
Confidence 35688888888654 45799999999999999865421 1244556677877 788999999999999977
Q ss_pred C-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC--c
Q 010997 216 K-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA--Q 292 (496)
Q Consensus 216 ~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~ 292 (496)
. |..++++|+++-...... .+..-.+.+. ...++... .
T Consensus 73 d~Dhs~KvfDvEn~Dminmi--------------------------------------KL~~lPg~a~-wv~skGd~~s~ 113 (558)
T KOG0882|consen 73 DPDHSVKVFDVENFDMINMI--------------------------------------KLVDLPGFAE-WVTSKGDKISL 113 (558)
T ss_pred CcccceeEEEeeccchhhhc--------------------------------------ccccCCCceE-EecCCCCeeee
Confidence 7 999999999853221100 0000011111 11122211 1
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC----CCCCC-----CCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN----LTSNG-----VGS 363 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~----~~~~~-----~~~ 363 (496)
+-++.-.++.+.++|-+...++......-|..+|.++.++| .+..+++....|.|..|.... +.... ...
T Consensus 114 IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 114 IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred EEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccc
Confidence 23334467999999998877666666678999999999999 899999999999999998773 11000 011
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~ 408 (496)
-+..+........++.|+|++.. +++-+.|..|+++++.++.-.
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred hhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhh
Confidence 12223334567889999999996 578889999999999885433
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.58 E-value=9.9e-06 Score=73.66 Aligned_cols=216 Identities=14% Similarity=0.166 Sum_probs=131.5
Q ss_pred eeeecC-CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997 201 ALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (496)
Q Consensus 201 ~l~~~p-~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (496)
+..|.+ ++.++++-...+.|..|+..++.. ..+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----------------------------------------~~~~~~-- 40 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----------------------------------------EVIDLP-- 40 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------------------------------------EEEESS--
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----------------------------------------EEEecC--
Confidence 678888 666777777889999999876432 112211
Q ss_pred ceeEEEEc-cCCCceEEEEcCCCeEEEEEccCCCccceeeec--c-CCCCeEEEEecCCCCcEEEEEcCC--------Cc
Q 010997 280 TVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--A-HDADLHCVDWNPLDDNLILTGSAD--------NS 347 (496)
Q Consensus 280 ~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~~v~~i~~sp~~~~~l~sgs~d--------g~ 347 (496)
....+.+. +++ . |+.+.. +.+.++|..+++...+.... . .....+.++++| ++++.++.... |.
T Consensus 41 ~~~G~~~~~~~g-~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 41 GPNGMAFDRPDG-R-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp SEEEEEEECTTS-E-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEE
T ss_pred CCceEEEEccCC-E-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccc
Confidence 26677777 554 4 444444 44555698887632222221 1 346789999999 88877776544 44
Q ss_pred EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997 348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (496)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (496)
|..++... . +..+...-...+.|+|+|+++.|+++-+..+.|..+++...+... .....+....
T Consensus 117 v~~~~~~~-------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--------~~~~~~~~~~ 180 (246)
T PF08450_consen 117 VYRIDPDG-------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--------SNRRVFIDFP 180 (246)
T ss_dssp EEEEETTS-------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--------EEEEEEEE-S
T ss_pred eEEECCCC-------e-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccce--------eeeeeEEEcC
Confidence 66666552 2 222222345678999999999888788888999999987532211 0112233333
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~ 494 (496)
+-.+..-.+++..+|...++..+ .+.|.+++.. ++.+..+......+++|+|
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~~--------~~~I~~~~p~-------G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADWG--------GGRIVVFDPD-------GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEET--------TTEEEEEETT-------SCEEEEEE-SSSSEEEEEE
T ss_pred CCCcCCCcceEcCCCCEEEEEcC--------CCEEEEECCC-------ccEEEEEcCCCCCEEEEEE
Confidence 33334678999998764443322 2789999887 4455555544446777777
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.6e-06 Score=80.08 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=146.6
Q ss_pred CCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997 194 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (496)
Q Consensus 194 h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (496)
|.+ .|+.+.- ...+++++++.||.++.|.-..- .-.+.+..
T Consensus 8 hrd-~i~hv~~-tka~fiiqASlDGh~KFWkKs~i-------------------------------------sGvEfVKh 48 (558)
T KOG0882|consen 8 HRD-VITHVFP-TKAKFIIQASLDGHKKFWKKSRI-------------------------------------SGVEFVKH 48 (558)
T ss_pred ccc-eeeeEee-ehhheEEeeecchhhhhcCCCCc-------------------------------------cceeehhh
Confidence 444 4444433 34679999999999999975420 11122355
Q ss_pred eecCCCceeEEEEccCCCceEEEEcC-CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC-cEEEE-EcCCCcEEE
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-NLILT-GSADNSVRM 350 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~~l~s-gs~dg~i~i 350 (496)
+..|...|.+++.+-++ .++.|++. |..++++|+.+-.......+.--...+. ...+|.+. ..+|+ .-.+|.|.+
T Consensus 49 FraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred hHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEE
Confidence 67788999999999998 88999888 9999999998866322222212222222 22233111 23443 345789999
Q ss_pred EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC--CCCCeeEEEecC
Q 010997 351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT--NYPAGLFFQHAG 428 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 428 (496)
+|-+... .+....-.-|..+|..+.++|.+.. +++....|-|.-|..... .+....... .....-++.+..
T Consensus 127 vD~~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~--~qfPr~~l~~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 127 VDGFGDF----CQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGP--FQFPRTNLNFELKHETDLYGFPK 199 (558)
T ss_pred ECCcCCc----CccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCc--ccCccccccccccccchhhcccc
Confidence 9988632 3445555679999999999999985 458888899999998731 110000000 011122333344
Q ss_pred CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997 429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 483 (496)
Q Consensus 429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~ 483 (496)
......++.|+|++..+. +-+.|..|+++.+. ++.++++++
T Consensus 200 ~Kt~pts~Efsp~g~qis--------tl~~DrkVR~F~~K------tGklvqeiD 240 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQIS--------TLNPDRKVRGFVFK------TGKLVQEID 240 (558)
T ss_pred cccCccceEEccccCccc--------ccCcccEEEEEEec------cchhhhhhh
Confidence 456788999999887644 33456999999998 677777765
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=7.2e-06 Score=74.82 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=65.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEec
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGG 215 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~ 215 (496)
.+|...|..++|+|.+.-++..++.+..|.|.|+++. ..+..+..|. .+++++|.-+. .+|..|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~------------~~vssy~a~~--~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS------------CVVSSYIAYN--QIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccc------------eeeeheeccC--CceeeeeccCCcceeEEec
Confidence 4577899999999976668999999999999999988 4455566663 58999998875 4788999
Q ss_pred CCCcEEEEecCCc
Q 010997 216 KDKSVVLWSIQDH 228 (496)
Q Consensus 216 ~Dg~i~iwd~~~~ 228 (496)
..|.|.|+|++..
T Consensus 256 ~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 256 QNGMVLVYDMRQP 268 (463)
T ss_pred cCceEEEEEccCC
Confidence 9999999999864
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.53 E-value=2.4e-06 Score=85.57 Aligned_cols=155 Identities=14% Similarity=0.217 Sum_probs=113.5
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---------CCcEEE
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRM 350 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---------dg~i~i 350 (496)
.|.-++.+ + .++.+|...|+|.+-|.++.+ .+..+.+|.+.|..+.. .|++|++++. |..|++
T Consensus 179 ~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 179 GVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred ceEEEEec--C-cEEEeecccceEEeecCCcCc--eeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhh
Confidence 35444443 3 689999999999999999888 78889999999988776 5788888874 556899
Q ss_pred EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC
Q 010997 351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 430 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 430 (496)
||+|+++ .+..+.-+.++ .-+.|+|.-...+|.++..|...+-|....+. |+.-++....-.
T Consensus 251 YDLRmmr------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN-----------P~~~~~~v~p~~ 312 (1118)
T KOG1275|consen 251 YDLRMMR------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN-----------PPAGVKMVNPNG 312 (1118)
T ss_pred hhhhhhh------ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC-----------CccceeEEccCC
Confidence 9999954 44444444444 56889998777788899999999999554322 222233333334
Q ss_pred CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 431 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 431 ~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
..+..+++++++..++ -|..+|.|.+|.-.
T Consensus 313 s~i~~fDiSsn~~ala--------fgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 313 SGISAFDISSNGDALA--------FGDHEGHVNLWADR 342 (1118)
T ss_pred CcceeEEecCCCceEE--------EecccCcEeeecCC
Confidence 5599999999888665 45567999999854
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.53 E-value=2.4e-07 Score=57.02 Aligned_cols=38 Identities=18% Similarity=0.506 Sum_probs=35.1
Q ss_pred CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEE
Q 010997 269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 307 (496)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 307 (496)
+++..+.+|.+.|++|+|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 3467899999999999999997 8999999999999997
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.45 E-value=6.1e-05 Score=72.81 Aligned_cols=151 Identities=16% Similarity=0.299 Sum_probs=98.7
Q ss_pred ceeEEEEccCCCceEEEE----cCCCe----EEEEEccCCCcc-ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997 280 TVEDVTFCPSSAQEFCSV----GDDSC----LILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 350 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~----~~dg~----i~iwd~~~~~~~-~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i 350 (496)
...++.|+...++.+.|. +.+|. -.+|++...+.. ...+.....+.|.|.+++| +...|+.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 346777877555666654 23443 345666544311 1222336788999999999 9999999999999999
Q ss_pred EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe--eEEEecC
Q 010997 351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG--LFFQHAG 428 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 428 (496)
||... + +..+....-.++.++|+|+|. +|++|+..|.+.+||+.-..-.... -.++..|.. -+..+..
T Consensus 286 yD~~~------~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qL-lsEd~~P~~~L~Ls~yf~ 355 (545)
T PF11768_consen 286 YDTTR------G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQL-LSEDATPKSTLQLSKYFR 355 (545)
T ss_pred EEcCC------C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceee-ccccCCCccEEeeehhcc
Confidence 99886 2 333334556789999999999 6779999999999999763221111 111112222 1223344
Q ss_pred CCCCcceEEecCC
Q 010997 429 HRDKVVDFHWNAS 441 (496)
Q Consensus 429 h~~~V~~~~~~p~ 441 (496)
+...+..+.|.+.
T Consensus 356 ~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 356 VSSSLVHIQWAPA 368 (545)
T ss_pred CcchhheeEeccC
Confidence 5667888999853
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.9e-05 Score=78.35 Aligned_cols=189 Identities=13% Similarity=0.208 Sum_probs=122.7
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
.++|++++ +++|+-|..+|.|++.+.+... .....|
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~------------------------------------------~~~~~~ 76 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP------------------------------------------KTNFDH 76 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc------------------------------------------cccccc
Confidence 45667764 5789999999999999876321 111223
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC----CCcEEEEEcCCCcEEEEeC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDR 353 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~----~~~~l~sgs~dg~i~iwd~ 353 (496)
+.. ..+| .+++||+.||+|.|-.+-+.+. .... ....++.+|+++|+ ....+++|+.-| +.++.-
T Consensus 77 s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~--~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er 145 (846)
T KOG2066|consen 77 SSS------ILEG-EYVASCSDDGKVVIGSLFTDDE--ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER 145 (846)
T ss_pred ccc------ccCC-ceEEEecCCCcEEEeeccCCcc--ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence 322 4456 7899999999999999888772 3322 45678999999993 257899999999 888765
Q ss_pred CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 433 (496)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 433 (496)
+-+. ...-..+..-.++|.++.|..+ ++|=++.+ -|+|||+.............. .+. -...-
T Consensus 146 ~wlg----nk~~v~l~~~eG~I~~i~W~g~---lIAWand~-Gv~vyd~~~~~~l~~i~~p~~-~~R--------~e~fp 208 (846)
T KOG2066|consen 146 NWLG----NKDSVVLSEGEGPIHSIKWRGN---LIAWANDD-GVKVYDTPTRQRLTNIPPPSQ-SVR--------PELFP 208 (846)
T ss_pred hhhc----CccceeeecCccceEEEEecCc---EEEEecCC-CcEEEeccccceeeccCCCCC-CCC--------cccCC
Confidence 5432 1112245556789999999744 67677655 499999988422221111110 000 01123
Q ss_pred ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
..+.|.++...++ |+.-+|+|..++
T Consensus 209 phl~W~~~~~LVI----------GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQDEDRLVI----------GWGDSVKICSIK 233 (846)
T ss_pred CceEecCCCeEEE----------ecCCeEEEEEEe
Confidence 4578888655433 444689999888
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.42 E-value=0.00034 Score=63.51 Aligned_cols=205 Identities=13% Similarity=0.178 Sum_probs=125.6
Q ss_pred CceeEEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec----
Q 010997 141 GEVNRIRELPQNTKIVATHTDSP-DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG---- 215 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~---- 215 (496)
.....++.+|..+..+|.+-.-| ...+||..++.....+. ...-..|.||. .|++||++|++.-
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~----a~~gRHFyGHg-------~fs~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW----APPGRHFYGHG-------VFSPDGRLLYTTENDYE 73 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc----CCCCCEEecCE-------EEcCCCCEEEEeccccC
Confidence 34456777887777888887766 47889998884332221 12334555552 5899999998863
Q ss_pred -CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 216 -KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 216 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
..|.|-|||....- ..+..+..|.-.--.+.+.|++.. |
T Consensus 74 ~g~G~IgVyd~~~~~---------------------------------------~ri~E~~s~GIGPHel~l~pDG~t-L 113 (305)
T PF07433_consen 74 TGRGVIGVYDAARGY---------------------------------------RRIGEFPSHGIGPHELLLMPDGET-L 113 (305)
T ss_pred CCcEEEEEEECcCCc---------------------------------------EEEeEecCCCcChhhEEEcCCCCE-E
Confidence 46899999997321 112334444444556677777733 3
Q ss_pred EEE------------------cCCCeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcCCCc-------
Q 010997 295 CSV------------------GDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNS------- 347 (496)
Q Consensus 295 ~s~------------------~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~dg~------- 347 (496)
+.+ ..+-.+...|.++++..-...+ ..|.-.|..+++++ ++..++..-..|.
T Consensus 114 vVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PL 192 (305)
T PF07433_consen 114 VVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPL 192 (305)
T ss_pred EEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCe
Confidence 332 1223455556666652111123 33667889999988 6665555433332
Q ss_pred EEEEeCCCCCCCCCCCCceEe-------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 348 VRMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~-------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
|.+++... .+..+ ..-.+.|-+|++++++..+.+|+=..+.+.+||..+.
T Consensus 193 va~~~~g~--------~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 193 VALHRRGG--------ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred EEEEcCCC--------cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 33333322 12222 2345789999999999977777777899999999884
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=1.6e-07 Score=93.24 Aligned_cols=205 Identities=15% Similarity=0.222 Sum_probs=138.6
Q ss_pred CCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997 185 SRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (496)
Q Consensus 185 ~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (496)
.++..+++.|.. ..+|++|+.+.++|+.|+..|.|+++++.++...
T Consensus 1091 Fr~w~~frd~~~-~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--------------------------------- 1136 (1516)
T KOG1832|consen 1091 FRSWRSFRDETA-LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--------------------------------- 1136 (1516)
T ss_pred cccchhhhcccc-ceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------------
Confidence 356667778876 5799999999999999999999999999876432
Q ss_pred CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC-eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc
Q 010997 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 343 (496)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs 343 (496)
....+|..+|+-+.-+.+|..+|.+++... -..+|++.+.-. ..+.+ ..-.++.|+. .-+.-+.|+
T Consensus 1137 -------~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~-~~Hsf----~ed~~vkFsn-~~q~r~~gt 1203 (1516)
T KOG1832|consen 1137 -------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG-PRHSF----DEDKAVKFSN-SLQFRALGT 1203 (1516)
T ss_pred -------ccccccccccccccccCCcceeeeeccccCchHHHhccccccC-ccccc----cccceeehhh-hHHHHHhcc
Confidence 456789999999999999965555555554 577999876332 23333 2346788987 444445566
Q ss_pred CCCcEEEEeCCCCCCCCCCCCceEe-c---cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCC
Q 010997 344 ADNSVRMFDRRNLTSNGVGSPINKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 419 (496)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~-~---~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 419 (496)
.-....+||+.+ +.++.++ . +....-+...|+|+...+| .||. +||++.. +
T Consensus 1204 ~~d~a~~YDvqT------~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndGv--LWDvR~~-~------------ 1258 (1516)
T KOG1832|consen 1204 EADDALLYDVQT------CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDGV--LWDVRIP-E------------ 1258 (1516)
T ss_pred cccceEEEeccc------CcHHHHhcCcchhhhhhccccccCCCcceEe----eCce--eeeeccH-H------------
Confidence 667799999999 5666553 2 1222337889999998554 4664 7999874 1
Q ss_pred CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997 420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 483 (496)
Q Consensus 420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~ 483 (496)
.+..+..... -..-.|+|+|..+++ .--|||++ +-..+..++
T Consensus 1259 --aIh~FD~ft~-~~~G~FHP~g~eVII-------------NSEIwD~R------TF~lLh~VP 1300 (1516)
T KOG1832|consen 1259 --AIHRFDQFTD-YGGGGFHPSGNEVII-------------NSEIWDMR------TFKLLHSVP 1300 (1516)
T ss_pred --HHhhhhhhee-cccccccCCCceEEe-------------echhhhhH------HHHHHhcCc
Confidence 1111111111 112358999888775 23689988 555554443
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=2.9e-05 Score=77.71 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=128.2
Q ss_pred eeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce
Q 010997 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 281 (496)
Q Consensus 202 l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 281 (496)
-+|++.+..++.|+.+|.|.+.+-.- ..++.+..+...+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-----------------------------------------~~~~~fqa~~~si 67 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-----------------------------------------QLIRGFQAYEQSI 67 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-----------------------------------------eeeehheecchhh
Confidence 35677888999999999998887431 1123344555552
Q ss_pred eEEEEccCCCceEEEEcCCC-----eEEEEEccCCC--c-ccee---eec-----cCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 282 EDVTFCPSSAQEFCSVGDDS-----CLILWDARVGT--S-PVIK---VEK-----AHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~--~-~~~~---~~~-----~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
-..-+.-++..+|++.+.|+ .|+|||+...+ . |... ... ....++.+++.+. +-..+|+|-.+
T Consensus 68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~n 146 (933)
T KOG2114|consen 68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTN 146 (933)
T ss_pred hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecC
Confidence 22333333436777776664 59999997642 1 2221 111 2356788999998 78999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCC-EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~-llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
|.|.++.-.-.+.. +....-...-..+|+.+++..++.. +||+. -..|.+|.+... . ....
T Consensus 147 G~V~~~~GDi~RDr--gsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr------------~--p~~~ 208 (933)
T KOG2114|consen 147 GLVICYKGDILRDR--GSRQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGR------------T--PSLK 208 (933)
T ss_pred cEEEEEcCcchhcc--ccceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCC------------C--ccee
Confidence 99999853321111 1222222234679999999999887 34333 347999999853 1 2234
Q ss_pred EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.+..|...+.+..+++....++++.+ ..|.+|+..+
T Consensus 209 ~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~ 244 (933)
T KOG2114|consen 209 VLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDG 244 (933)
T ss_pred eeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCC
Confidence 46677778899999985554665444 5799999873
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.39 E-value=4.2e-05 Score=74.46 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=114.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~ 232 (496)
+..+++++.+|.|..+|..++.. .....-... ...... .++..++.++.+|.|..+|..++....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~-~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W 129 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR------------LWRVDLDER-LSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELW 129 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE------------eeeecCCCC-cccceE--EcCCEEEEEcCCCEEEEEECCCCcEee
Confidence 44677888889999999888732 222111111 111122 246678888889999999998886654
Q ss_pred cCCccccccCCC--CCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce-----eEEEEccCCCceEEEEcCCCeEEE
Q 010997 233 ATDPATAKSAGS--SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSVGDDSCLIL 305 (496)
Q Consensus 233 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~i 305 (496)
............ ....+.. ....+.+..++..+++.+-.+......+ .+.... + ..++.+..++.+..
T Consensus 130 ~~~~~~~~~~~p~v~~~~v~v--~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~a 204 (377)
T TIGR03300 130 RAKLSSEVLSPPLVANGLVVV--RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVA 204 (377)
T ss_pred eeccCceeecCCEEECCEEEE--ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEE
Confidence 433221110000 0001111 1122334444444444333332211111 011111 2 35777888899999
Q ss_pred EEccCCCccceeeecc-CC---CC---eEEEEecC-CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 306 WDARVGTSPVIKVEKA-HD---AD---LHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 306 wd~~~~~~~~~~~~~~-~~---~~---v~~i~~sp-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
+|.++++ ....... .. .. +..+.-+| ..+..+.+++.+|.+..||..+ ++.+..... . ....
T Consensus 205 ld~~tG~--~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G~~~W~~~~-~-~~~~ 274 (377)
T TIGR03300 205 LDLQTGQ--PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------GRVLWKRDA-S-SYQG 274 (377)
T ss_pred EEccCCC--EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------CcEEEeecc-C-CccC
Confidence 9998887 2221110 00 00 00111111 0245677788899999999987 665554431 1 1122
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
... .+..++ .++.||.|..+|..++
T Consensus 275 p~~--~~~~vy-v~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 275 PAV--DDNRLY-VTDADGVVVALDRRSG 299 (377)
T ss_pred ceE--eCCEEE-EECCCCeEEEEECCCC
Confidence 222 344454 6677999999999774
No 317
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.37 E-value=0.00098 Score=62.73 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=74.1
Q ss_pred EEcc-CCCceEEEEcCCCeEEEEEccCCCcc---ceeeec-------cCCCCeEEEEecCCCCcEEEEEc----------
Q 010997 285 TFCP-SSAQEFCSVGDDSCLILWDARVGTSP---VIKVEK-------AHDADLHCVDWNPLDDNLILTGS---------- 343 (496)
Q Consensus 285 ~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~-------~~~~~v~~i~~sp~~~~~l~sgs---------- 343 (496)
.|.+ ++ ..+....+ |+|.+.|+...... ...... -....+.-++++| ++..+.+..
T Consensus 200 ~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 200 AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccC
Confidence 3455 66 44544444 99999997554311 111111 0233444599999 666665532
Q ss_pred CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC-CEEEEEeCCCcEEEEECCCC
Q 010997 344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~llas~~~dg~i~iwd~~~~ 405 (496)
..+.|.++|..+ ++.+..+.. ...+..++++|+++ .++++...++.|.++|..+.
T Consensus 277 ~~~~V~ViD~~t------~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 277 ASRFLFVVDAKT------GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCEEEEEECCC------CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 225799999998 677777763 55789999999999 77666667889999999874
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=1.3e-05 Score=77.29 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=65.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.+..+.++..|.|++++| +...|+.|+.||+|.+||...+. ..+....- ..+.++|+|+|..++
T Consensus 252 svtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~--------------t~~~ka~~-~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGV--------------TLLAKAEF-IPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCe--------------eeeeeecc-cceEEEEcCCCcEEE
Confidence 456788999999999999 77889999999999999987762 11222222 457899999999999
Q ss_pred EecCCCcEEEEecCC
Q 010997 213 SGGKDKSVVLWSIQD 227 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~ 227 (496)
+|+.-|.+.+||+.-
T Consensus 316 V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 316 VGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCceEEEEEeec
Confidence 999999999999864
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=1.7e-05 Score=78.35 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=93.4
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-----------CCcEEEEEcCCCcE
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----------DDNLILTGSADNSV 348 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-----------~~~~l~sgs~dg~i 348 (496)
.-.++.|+|.| +|+-|+. ..|.+-|.++-+ .+.....|...|+.+.|.|. ..-+||++...|.|
T Consensus 17 N~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q--~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQ--LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccCccc--eEEEecC-ceEEEEehhhhh--hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 35678999988 5666654 678899998877 67778889999999999872 23467888889999
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEECCCC
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd~~~~ 405 (496)
.+||... +..+..+..|..++..++|-|. .+.+|++-.....|.+|+..++
T Consensus 92 il~d~~~------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 92 ILVDFVL------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred EEEEehh------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence 9999998 7788889999999999999873 4356666666789999999886
No 320
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.27 E-value=0.00023 Score=69.25 Aligned_cols=220 Identities=16% Similarity=0.089 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
++..++.++.+|.++.+|..++.... .... ...+.+.... .+..++.++.+|.|..||.+++...
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W------------~~~~--~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELW------------RAKL--SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEee------------eecc--CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence 34567778889999999998873221 1111 1111111111 2446777778999999999887664
Q ss_pred ccCCcccccc---CCCCC----ceeccCCCCCCCCCCCCCCCCcCCeeeeecC-----C--CceeEEEEcc--CCCceEE
Q 010997 232 SATDPATAKS---AGSSG----SIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-----E--DTVEDVTFCP--SSAQEFC 295 (496)
Q Consensus 232 ~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~--~~v~~l~~~~--~~~~~l~ 295 (496)
.......... ..... ..+... ...+.+...+..+++.+...... . .....+.-+| .+ ..++
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~~~~v~~~--~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy 245 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIADGGVLVG--FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVY 245 (377)
T ss_pred eEEccCCCceeecCCCCCEEECCEEEEE--CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEE
Confidence 4332211100 00000 001110 11112222222222211111000 0 0000000011 12 4677
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-C
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-A 374 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~ 374 (496)
.++.+|.+..||..+++ ...... .. ....... .+..+++++.+|.|..+|..+ +..+........ .
T Consensus 246 ~~~~~g~l~a~d~~tG~--~~W~~~-~~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~t------G~~~W~~~~~~~~~ 312 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGR--VLWKRD-AS-SYQGPAV---DDNRLYVTDADGVVVALDRRS------GSELWKNDELKYRQ 312 (377)
T ss_pred EEEcCCEEEEEECCCCc--EEEeec-cC-CccCceE---eCCEEEEECCCCeEEEEECCC------CcEEEccccccCCc
Confidence 78889999999998887 333222 11 1122222 456777888999999999987 655544422111 1
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
..+... .+.. +++++.+|.|+++|..++
T Consensus 313 ~ssp~i--~g~~-l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 313 LTAPAV--VGGY-LVVGDFEGYLHWLSREDG 340 (377)
T ss_pred cccCEE--ECCE-EEEEeCCCEEEEEECCCC
Confidence 222222 2443 457888999999998774
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=2.2e-06 Score=85.45 Aligned_cols=175 Identities=12% Similarity=0.195 Sum_probs=125.2
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC-
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN- 346 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg- 346 (496)
..+...|..|....+|++|+-.. +.|+.|+..|.|++|++.++. .......|.++|+.+.-+. ++.++++.+.-.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--ccccccccccccccccccC-CcceeeeeccccC
Confidence 34556778889999999999887 799999999999999999988 4455678999999999888 777766655443
Q ss_pred -cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 347 -SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 347 -~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
-..+|++.+. +.+.++|.. -.++.|+..-..- +.|..-....|||+.+....++. +..
T Consensus 1167 PlsaLW~~~s~-----~~~~Hsf~e----d~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~ty-----------lt~ 1225 (1516)
T KOG1832|consen 1167 PLSALWDASST-----GGPRHSFDE----DKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTY-----------LTD 1225 (1516)
T ss_pred chHHHhccccc-----cCccccccc----cceeehhhhHHHH-HhcccccceEEEecccCcHHHHh-----------cCc
Confidence 4789999873 577787764 2477888764432 23444456899999996544331 111
Q ss_pred ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997 426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK 486 (496)
Q Consensus 426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~ 486 (496)
..+..-.=+...|+|++..++ +.=-+||++ ..+.+..+...+
T Consensus 1226 ~~~~~y~~n~a~FsP~D~LIl-------------ndGvLWDvR------~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDTLIL-------------NDGVLWDVR------IPEAIHRFDQFT 1267 (1516)
T ss_pred chhhhhhccccccCCCcceEe-------------eCceeeeec------cHHHHhhhhhhe
Confidence 111112236788999888766 344679999 567788877665
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.24 E-value=0.00034 Score=62.45 Aligned_cols=209 Identities=16% Similarity=0.271 Sum_probs=117.5
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
+-..++..|+|.|+++.++|+....+.|...+.+... .....+.+..+ .-+|++..++.++++--++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v-----------lr~i~l~g~~D--~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV-----------LRRIPLDGFGD--YEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E-----------EEEEE-SS-SS--EEEEEE-STTEEEEEETTT
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE-----------EEEEeCCCCCC--ceeEEEECCCEEEEEEcCC
Confidence 4455799999999778888888888999888875321 11123455444 4689998888888877789
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe--eeeecCCCceeEEEEccCCCceEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR--GIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
+.+.+.++........... ...+ .....+...+..++|.|.+ +.|+
T Consensus 86 ~~L~~~~~~~~~~~~~~~~-------------------------------~~~~~l~~~~~~N~G~EGla~D~~~-~~L~ 133 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRAD-------------------------------VQKISLGFPNKGNKGFEGLAYDPKT-NRLF 133 (248)
T ss_dssp TEEEEEEE----TT--EEE-------------------------------EEEEE---S---SS--EEEEEETTT-TEEE
T ss_pred CcEEEEEEeccccccchhh-------------------------------ceEEecccccCCCcceEEEEEcCCC-CEEE
Confidence 9999999854321110000 0000 0112355678999999988 4555
Q ss_pred EEcCCCeEEEEEccC--CCccc-eee------eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 296 SVGDDSCLILWDARV--GTSPV-IKV------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 296 s~~~dg~i~iwd~~~--~~~~~-~~~------~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
.+-+..-..||.++. ..... ... .......+.+++++|..+.+++.+..+..|..+|.. +.++.
T Consensus 134 v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-------G~~~~ 206 (248)
T PF06977_consen 134 VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-------GRVVS 206 (248)
T ss_dssp EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---------EEE
T ss_pred EEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-------CCEEE
Confidence 566666677777764 11111 111 112445688999999888999999999999999944 56555
Q ss_pred EeccCC---------CCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997 367 KFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIW 400 (496)
Q Consensus 367 ~~~~h~---------~~i~~l~~sp~~~~llas~~~dg~i~iw 400 (496)
.+.-.. ...-.|+|.++|. |+ ..++-+..++|
T Consensus 207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 207 SLSLDRGFHGLSKDIPQPEGIAFDPDGN-LY-IVSEPNLFYRF 247 (248)
T ss_dssp EEE-STTGGG-SS---SEEEEEE-TT---EE-EEETTTEEEEE
T ss_pred EEEeCCcccCcccccCCccEEEECCCCC-EE-EEcCCceEEEe
Confidence 443222 3567899999986 66 44455555444
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.10 E-value=0.0012 Score=69.02 Aligned_cols=205 Identities=11% Similarity=0.221 Sum_probs=123.9
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
.|.++.|..+.+.++.+..+|.|.+-|.++... .....-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------------------eivg~v 108 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------------------EIVGNV 108 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------------------eeeeec
Confidence 588999999988888888899999998775432 122234
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEcc----CCCc----------c-------ceeeecc---------------
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VGTS----------P-------VIKVEKA--------------- 321 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~----------~-------~~~~~~~--------------- 321 (496)
...|.+++|+|+. ..++..+..+++.+-+-. ..+. . ....+.+
T Consensus 109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 109 DNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred cCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 5689999999998 677777777777665431 0000 0 0001110
Q ss_pred ------CCCCeEEEEecCCCCcEEEEE-----cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEE
Q 010997 322 ------HDADLHCVDWNPLDDNLILTG-----SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 390 (496)
Q Consensus 322 ------~~~~v~~i~~sp~~~~~l~sg-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas 390 (496)
-.+.=+.|.|-- +|.++|+. .....|++||..- ..-..-..-.+.=.+++|-|.|. ++|+
T Consensus 188 ~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg-------~Lns~se~~~~l~~~LsWkPsgs-~iA~ 258 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDREG-------ALNSTSEPVEGLQHSLSWKPSGS-LIAA 258 (1265)
T ss_pred cccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEecccc-------hhhcccCcccccccceeecCCCC-eEee
Confidence 011123588887 89999983 3337899999762 11111111223335899999988 4555
Q ss_pred Ee---CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 391 SA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 391 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
-. .|+.|.+|.-+.... .............|..++|+.++..|++-.+ ......|++|-+
T Consensus 259 iq~~~sd~~IvffErNGL~h------------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~-----~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 259 IQCKTSDSDIVFFERNGLRH------------GEFVLPFPLDEKEVEELAWNSNSDILAVVTS-----NLENSLVQLWTT 321 (1265)
T ss_pred eeecCCCCcEEEEecCCccc------------cccccCCcccccchheeeecCCCCceeeeec-----ccccceEEEEEe
Confidence 43 366788888654211 0111111222334899999998776554221 222345999998
Q ss_pred CCC
Q 010997 468 SDL 470 (496)
Q Consensus 468 ~~~ 470 (496)
.+-
T Consensus 322 ~Ny 324 (1265)
T KOG1920|consen 322 GNY 324 (1265)
T ss_pred cCe
Confidence 753
No 324
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.08 E-value=0.0016 Score=58.75 Aligned_cols=212 Identities=13% Similarity=0.093 Sum_probs=116.1
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCC-CCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~-~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
+|+|..||..++. .+....--. .....+ ...+++.++++++.++.|..||..+++.......
T Consensus 2 ~g~l~~~d~~tG~------------~~W~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---- 64 (238)
T PF13360_consen 2 DGTLSALDPRTGK------------ELWSYDLGPGIGGPVA-TAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---- 64 (238)
T ss_dssp TSEEEEEETTTTE------------EEEEEECSSSCSSEEE-TEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC----
T ss_pred CCEEEEEECCCCC------------EEEEEECCCCCCCccc-eEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec----
Confidence 6788889987772 222222100 111111 1333566788888899999999987755332211
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceee-e
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-E 319 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~ 319 (496)
...+....... + ..++.++.++.|..+|..+++ .... .
T Consensus 65 -------------------------------------~~~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~--~~W~~~ 103 (238)
T PF13360_consen 65 -------------------------------------PGPISGAPVVD-G-GRVYVGTSDGSLYALDAKTGK--VLWSIY 103 (238)
T ss_dssp -------------------------------------SSCGGSGEEEE-T-TEEEEEETTSEEEEEETTTSC--EEEEEE
T ss_pred -------------------------------------cccccceeeec-c-cccccccceeeeEecccCCcc--eeeeec
Confidence 11111111222 2 346666678899999999988 3333 2
Q ss_pred ccCC---CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC----------E-EEEEEcCCCC
Q 010997 320 KAHD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA----------V-LCVQWSPDKS 385 (496)
Q Consensus 320 ~~~~---~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~----------i-~~l~~sp~~~ 385 (496)
.... .......... .+..++++..++.|..+|+++ +..+......... + ..+.+. ++
T Consensus 104 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 174 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKT------GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG- 174 (238)
T ss_dssp E-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTT------TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred cccccccccccccCceE-ecCEEEEEeccCcEEEEecCC------CcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence 2211 1111222222 367788888899999999998 7777766553322 1 233333 34
Q ss_pred CEEEEEeCCCc-EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEE
Q 010997 386 SVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 464 (496)
Q Consensus 386 ~llas~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~i 464 (496)
.++ .++.++. +.+ |+.+. ..+.... ...+..+ ....+..+++.. . ++.|..
T Consensus 175 ~v~-~~~~~g~~~~~-d~~tg---------------~~~w~~~--~~~~~~~-~~~~~~~l~~~~-~-------~~~l~~ 226 (238)
T PF13360_consen 175 RVY-VSSGDGRVVAV-DLATG---------------EKLWSKP--ISGIYSL-PSVDGGTLYVTS-S-------DGRLYA 226 (238)
T ss_dssp EEE-EECCTSSEEEE-ETTTT---------------EEEEEEC--SS-ECEC-EECCCTEEEEEE-T-------TTEEEE
T ss_pred EEE-EEcCCCeEEEE-ECCCC---------------CEEEEec--CCCccCC-ceeeCCEEEEEe-C-------CCEEEE
Confidence 455 4555665 555 98885 2223222 1223321 234466666433 3 499999
Q ss_pred eecC
Q 010997 465 WRMS 468 (496)
Q Consensus 465 w~~~ 468 (496)
||+.
T Consensus 227 ~d~~ 230 (238)
T PF13360_consen 227 LDLK 230 (238)
T ss_dssp EETT
T ss_pred EECC
Confidence 9998
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.07 E-value=0.00055 Score=62.17 Aligned_cols=203 Identities=15% Similarity=0.210 Sum_probs=120.5
Q ss_pred eeeeecCC-CCceEEecCCC-cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 200 FALAMCPT-EPYVLSGGKDK-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 200 ~~l~~~p~-~~~l~sg~~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
.+++.+|. ...++.+-+-| ...+||..++........ ..-+.|.+|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a--------------------------------~~gRHFyGH 55 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA--------------------------------PPGRHFYGH 55 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC--------------------------------CCCCEEecC
Confidence 45677784 44555665555 467788887654322211 112567777
Q ss_pred CCceeEEEEccCCCceEEEEc-----CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC--------
Q 010997 278 EDTVEDVTFCPSSAQEFCSVG-----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-------- 344 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-------- 344 (496)
. .|+++| .+|++.- ..|.|-|||....- ..+-.+..|.-....+.+.| ++..|+++-.
T Consensus 56 g------~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~-~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~ 126 (305)
T PF07433_consen 56 G------VFSPDG-RLLYTTENDYETGRGVIGVYDAARGY-RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDS 126 (305)
T ss_pred E------EEcCCC-CEEEEeccccCCCcEEEEEEECcCCc-EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCccc
Confidence 4 699999 5566543 35899999998332 24555666766778889999 8866666531
Q ss_pred ----------CCcEEEEeCCCCCCCCCCCCceE--e--ccCCCCEEEEEEcCCCCCEEEEEeC-CCc-------EEEEEC
Q 010997 345 ----------DNSVRMFDRRNLTSNGVGSPINK--F--EGHSAAVLCVQWSPDKSSVFGSSAE-DGL-------LNIWDY 402 (496)
Q Consensus 345 ----------dg~i~iwd~~~~~~~~~~~~~~~--~--~~h~~~i~~l~~sp~~~~llas~~~-dg~-------i~iwd~ 402 (496)
+..+.+.|.++ +..+.. + .-|..+|..+++.++|. ++ .+.. .|. |-+++.
T Consensus 127 GR~kLNl~tM~psL~~ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~-~a~Q~qg~~~~~~PLva~~~~ 198 (305)
T PF07433_consen 127 GRAKLNLDTMQPSLVYLDARS------GALLEQVELPPDLHQLSIRHLAVDGDGT-VA-FAMQYQGDPGDAPPLVALHRR 198 (305)
T ss_pred CceecChhhcCCceEEEecCC------CceeeeeecCccccccceeeEEecCCCc-EE-EEEecCCCCCccCCeEEEEcC
Confidence 12333444444 555555 3 33778899999999986 33 3432 211 222222
Q ss_pred CCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
... ..... .+... ...-.+.|-+|++++++..+++|+=.- |.+.+||..
T Consensus 199 g~~---~~~~~----~p~~~---~~~l~~Y~gSIa~~~~g~~ia~tsPrG-------g~~~~~d~~ 247 (305)
T PF07433_consen 199 GGA---LRLLP----APEEQ---WRRLNGYIGSIAADRDGRLIAVTSPRG-------GRVAVWDAA 247 (305)
T ss_pred CCc---ceecc----CChHH---HHhhCCceEEEEEeCCCCEEEEECCCC-------CEEEEEECC
Confidence 210 00000 00011 122345788999999988888766554 999999988
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.98 E-value=0.00036 Score=71.88 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=93.3
Q ss_pred CCCCCCCCCCcCCeeeeecCCCc-eeEEEEccC----CCceEEEEcCCCeEEEEEccCCCccceee---eccCCCCeEEE
Q 010997 258 GNDKAADGPSVGPRGIYNGHEDT-VEDVTFCPS----SAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADLHCV 329 (496)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~i 329 (496)
..+...+...++.+..+..|... |.+++-... .+.-.+.|-.+..+..||.|-....++.. .........|+
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 34555667777777777777644 554432210 11235667778899999999754222211 11345567888
Q ss_pred EecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (496)
Q Consensus 330 ~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~ 403 (496)
+-+. ..+||+|+.+|.|||||--. ...-..+.+-..+|..|..+.||++||||| +..+.+++..
T Consensus 584 aTt~--~G~iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 584 ATTE--DGYIAVGSNKGDIRLYDRLG------KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred EecC--CceEEEEeCCCcEEeecccc------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 8775 67899999999999999432 233445567789999999999999998777 5678888874
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.00036 Score=67.20 Aligned_cols=148 Identities=13% Similarity=0.144 Sum_probs=82.9
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccc-cCCccccccCCCCCceeccCCC-CCCCCCCCCCC------CCcC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATDPATAKSAGSSGSIIKQSPK-PGDGNDKAADG------PSVG 269 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~ 269 (496)
.|+.+.|.++...|+.|...|.|.||.....+... ...+...... ....... .......+.+. ....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYN-----FRRFSLNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcc-----cccccccCCCcceEEehhhCCcccccccC
Confidence 47889999998899999999999999887643322 0000000000 0000000 00000000000 1134
Q ss_pred CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceee--ec------cCCCCeEEEEecC-------C
Q 010997 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--EK------AHDADLHCVDWNP-------L 334 (496)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~------~~~~~v~~i~~sp-------~ 334 (496)
|...+....++|++++.+.-| +++.|..+|.+.|.|+|... .+.. .. .....|+++.|.- .
T Consensus 78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 555666678999999998776 89999999999999998776 3332 11 1345688888852 1
Q ss_pred CCcEEEEEcCCCcEEEEeCC
Q 010997 335 DDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 335 ~~~~l~sgs~dg~i~iwd~~ 354 (496)
..-++++|+..|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 23578999999999999875
No 328
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0022 Score=61.41 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=83.0
Q ss_pred cCCeeeeecCCCceeEEEEccCCC------ceEEEEcCCCeEEEEEccCCCccceeeeccC----CCCeEEEEecCCCCc
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDN 337 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~i~~sp~~~~ 337 (496)
++.+....-+.. |+-+.+.|+.. .--+.|-.|..|.-||+|-.....+...+.| .....|++-. ...
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG 442 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESG 442 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCc
Confidence 333344444444 55555655431 1134566788899999996553222222222 2345666655 467
Q ss_pred EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
++|+||.+|.|||||.-. ...-.-+.+-..+|..|..+.+|.+||+|+ +..+.+-++.-
T Consensus 443 ~IvvgS~~GdIRLYdri~------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDRIG------RRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred eEEEeecCCcEEeehhhh------hhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence 899999999999999743 344455678889999999999999988666 66777777654
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00071 Score=67.95 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=77.9
Q ss_pred EEecCCCCcEEEEEeC----CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997 146 IRELPQNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (496)
Q Consensus 146 l~~~p~~~~~lat~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~ 221 (496)
..|+| ...++|.++. .|+|-||--...+ ....+..-| +++++|+|..-.|+.|-.-|.+.
T Consensus 21 ~SWHP-sePlfAVA~fS~er~GSVtIfadtGEP-----------qr~Vt~P~h----atSLCWHpe~~vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 21 SSWHP-SEPLFAVASFSPERGGSVTIFADTGEP-----------QRDVTYPVH----ATSLCWHPEEFVLAQGWEMGVSD 84 (1416)
T ss_pred cccCC-CCceeEEEEecCCCCceEEEEecCCCC-----------Cccccccee----hhhhccChHHHHHhhccccceeE
Confidence 45788 4457776654 5788888533321 112233333 45799999988899999999999
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
+|...+... -.....|..+|..+.|+++| ..++|+..-|
T Consensus 85 v~~~~~~e~----------------------------------------htv~~th~a~i~~l~wS~~G-~~l~t~d~~g 123 (1416)
T KOG3617|consen 85 VQKTNTTET----------------------------------------HTVVETHPAPIQGLDWSHDG-TVLMTLDNPG 123 (1416)
T ss_pred EEecCCcee----------------------------------------eeeccCCCCCceeEEecCCC-CeEEEcCCCc
Confidence 998765322 13345689999999999999 7999999999
Q ss_pred eEEEEEcc
Q 010997 302 CLILWDAR 309 (496)
Q Consensus 302 ~i~iwd~~ 309 (496)
.|.+|...
T Consensus 124 ~v~lwr~d 131 (1416)
T KOG3617|consen 124 SVHLWRYD 131 (1416)
T ss_pred eeEEEEee
Confidence 99999775
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.0018 Score=63.13 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=90.1
Q ss_pred cceeeeecCCCCceEEe---cCC-CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997 198 AEFALAMCPTEPYVLSG---GKD-KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg---~~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (496)
.+..-+|+|++..++-. ... ..+.++|++++..... ..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------------------------------------~~ 235 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------------------------------------LN 235 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------------------------------------ec
Confidence 45667899998755433 222 4688888886543211 11
Q ss_pred eecCCCceeEEEEccCCCceEEEEcCCCeEE--EEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE-cCCCc--E
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI--LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNS--V 348 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~dg~--i 348 (496)
+. +.-..-+|+|+|..++++...||... ++|+.....+. +....+.-..=.|+| +|..++-. +..|. |
T Consensus 236 ~~---g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 236 FN---GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQI 308 (425)
T ss_pred cC---CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCC-CCCEEEEEeCCCCCcce
Confidence 22 23335589999988888888888755 55666655222 222222223567899 77766554 44555 4
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCC
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEK 404 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~ 404 (496)
.++|+.. .....+......-..-.|+|+|.+|+.....+|. |.+.|+..
T Consensus 309 ~~~~~~g-------~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 309 YLYDLEG-------SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred EEECCCC-------CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 4555553 3334443333333377899999987655544555 55666555
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.67 E-value=0.0031 Score=61.65 Aligned_cols=140 Identities=17% Similarity=0.227 Sum_probs=79.0
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
....+.++|+|++++.++ ||...|+...... . ..
T Consensus 34 ~p~~ls~npngr~v~V~g-~geY~iyt~~~~r------------------------------------------~---k~ 67 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR------------------------------------------N---KA 67 (443)
T ss_dssp --SEEEE-TTSSEEEEEE-TTEEEEEETTTTE------------------------------------------E---EE
T ss_pred CCeeEEECCCCCEEEEEc-CCEEEEEEccCCc------------------------------------------c---cc
Confidence 458999999999888865 7888887732110 1 12
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEE-EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILW-DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
.+....+.|.+.+ .+|+-...+.|.|+ ++.... ...+. ....+..|-. |.+|+..+.+ .|.+||+.+
T Consensus 68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~---~k~i~-~~~~~~~If~----G~LL~~~~~~-~i~~yDw~~- 135 (443)
T PF04053_consen 68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV---VKSIK-LPFSVEKIFG----GNLLGVKSSD-FICFYDWET- 135 (443)
T ss_dssp EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T---T------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT-
T ss_pred cCceeEEEEecCc--cEEEEECCCeEEEEEcCcccc---ceEEc-CCcccceEEc----CcEEEEECCC-CEEEEEhhH-
Confidence 3456678898844 58888778999996 332221 11111 1122333332 6666666544 899999999
Q ss_pred CCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
+..++++... +|..|.|++++.+ +|-.+ +..+.|++...
T Consensus 136 -----~~~i~~i~v~--~vk~V~Ws~~g~~-val~t-~~~i~il~~~~ 174 (443)
T PF04053_consen 136 -----GKLIRRIDVS--AVKYVIWSDDGEL-VALVT-KDSIYILKYNL 174 (443)
T ss_dssp -------EEEEESS---E-EEEEE-TTSSE-EEEE--S-SEEEEEE-H
T ss_pred -----cceeeEEecC--CCcEEEEECCCCE-EEEEe-CCeEEEEEecc
Confidence 7888888743 4899999999985 45555 44678877654
No 332
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.65 E-value=0.0071 Score=54.50 Aligned_cols=184 Identities=11% Similarity=0.068 Sum_probs=103.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
++..+++++.++.|+.||..++ +........ . .+.... ...+..++.++.++.|..+|..++...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG------------~~~W~~~~~-~-~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG------------KVLWRFDLP-G-PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS------------EEEEEEECS-S-CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCC------------CEEEEeecc-c-ccccee-eecccccccccceeeeEecccCCccee
Confidence 3445666688999999999888 333333331 1 121211 224555666667889999998877654
Q ss_pred ccC-CccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceEEEEcCCCeEEEEEcc
Q 010997 232 SAT-DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 309 (496)
Q Consensus 232 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 309 (496)
... ... .... ........+. + ..++.+..++.|..+|++
T Consensus 100 W~~~~~~------------------------------------~~~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 100 WSIYLTS------------------------------------SPPAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp EEEEE-S------------------------------------SCTCSTB--SEEEEE--T-TEEEEEETCSEEEEEETT
T ss_pred eeecccc------------------------------------ccccccccccCceEe--c-CEEEEEeccCcEEEEecC
Confidence 331 110 0000 0011122222 4 567777779999999999
Q ss_pred CCCccceeeeccCCCC----------e-EEEEecCCCCcEEEEEcCCCc-EEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 310 VGTSPVIKVEKAHDAD----------L-HCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 310 ~~~~~~~~~~~~~~~~----------v-~~i~~sp~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
+++ .+......... + ..+.+. ++ .+..++.++. +.+ |+.+ +..+.... ...+..
T Consensus 141 tG~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~t------g~~~w~~~--~~~~~~ 206 (238)
T PF13360_consen 141 TGK--LLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLAT------GEKLWSKP--ISGIYS 206 (238)
T ss_dssp TTE--EEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTT------TEEEEEEC--SS-ECE
T ss_pred CCc--EEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCC------CCEEEEec--CCCccC
Confidence 987 33333222211 1 233333 34 6666777775 555 9998 55443322 222333
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+ ..+.+..++ .++.++.|..||+.++
T Consensus 207 ~-~~~~~~~l~-~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 207 L-PSVDGGTLY-VTSSDGRLYALDLKTG 232 (238)
T ss_dssp C-EECCCTEEE-EEETTTEEEEEETTTT
T ss_pred C-ceeeCCEEE-EEeCCCEEEEEECCCC
Confidence 2 345666555 5558999999999985
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.60 E-value=0.0078 Score=58.08 Aligned_cols=250 Identities=11% Similarity=0.096 Sum_probs=124.8
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCcc-c-----cC-----------------------C--CCCCCCceE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH-A-----VL-----------------------G--ATNSRPDLI 190 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~-~-----~~-----------------------~--~~~~~~~~~ 190 (496)
.|+.+.|.+ ...-||.|...|.|.||......... . .. . .....|...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 488999999 55578889999999999876553221 0 00 0 001123334
Q ss_pred EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 191 l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
+....+ .|++++.+ +=.+++.|..+|++.|.|++............
T Consensus 82 ~~~~~g-~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------------------- 127 (395)
T PF08596_consen 82 LDAKQG-PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------------------- 127 (395)
T ss_dssp E---S--SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------------
T ss_pred eeccCC-cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------------------
Confidence 444444 79999997 44489999999999999998654432211100
Q ss_pred eeeeecCCCceeEEEEcc---CC----CceEEEEcCCCeEEEEEccC-CCcc----ceeeeccCCCCeEEEE-ecCC---
Q 010997 271 RGIYNGHEDTVEDVTFCP---SS----AQEFCSVGDDSCLILWDARV-GTSP----VIKVEKAHDADLHCVD-WNPL--- 334 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~---~~----~~~l~s~~~dg~i~iwd~~~-~~~~----~~~~~~~~~~~v~~i~-~sp~--- 334 (496)
...-......|+++.|.- .+ .-.+++|...|.+.+|.+.- .... .......+.+.|..|. ++..
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~ 207 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE 207 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC
Confidence 000112334577777752 11 13688889999999998752 1110 1111123555555554 3210
Q ss_pred -----------------CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC----CCCCEEEEEeC
Q 010997 335 -----------------DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----DKSSVFGSSAE 393 (496)
Q Consensus 335 -----------------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp----~~~~llas~~~ 393 (496)
-..++++ ..+..++++..-+ .+..++..........+.+-+ .+...|++-..
T Consensus 208 ~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~ 280 (395)
T PF08596_consen 208 SALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPK------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN 280 (395)
T ss_dssp B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred cccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCC------CcccceeeccccccceEEEEeecccCCceEEEEEEC
Confidence 1124444 4467799998887 444444442222333445532 23346778888
Q ss_pred CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC----CCCCcceEEecCCCCcEEEE
Q 010997 394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 394 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~~p~~~~l~~s 448 (496)
+|.|++|.+....+ +....- ....+....++++|..++.+
T Consensus 281 ~G~i~i~SLP~Lke---------------i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 281 NGSIRIYSLPSLKE---------------IKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp TSEEEEEETTT--E---------------EEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred CCcEEEEECCCchH---------------hhcccCCCccccccccccEECCCCCEEEEe
Confidence 99999999988522 221111 22345667788888755443
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.60 E-value=0.0083 Score=58.70 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=58.4
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
..++.++.+|.+..+|..+++ ...... . .....+.. .+..+..++.+|.+..+|..+ +..+-....-
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~--~~W~~~-~-~~~~~~~~---~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~~ 323 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQ--IVWKRE-Y-GSVNDFAV---DGGRIYLVDQNDRVYALDTRG------GVELWSQSDL 323 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCC--EEEeec-C-CCccCcEE---ECCEEEEEcCCCeEEEEECCC------CcEEEccccc
Confidence 356667788999999999887 222211 1 11112222 356677778899999999987 5444332211
Q ss_pred C-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 372 S-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 372 ~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
. ....+.... +..+ ..++.||.|.+.|..++
T Consensus 324 ~~~~~~sp~v~--~g~l-~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 324 LHRLLTAPVLY--NGYL-VVGDSEGYLHWINREDG 355 (394)
T ss_pred CCCcccCCEEE--CCEE-EEEeCCCEEEEEECCCC
Confidence 1 111222221 3334 47788999999998874
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.0068 Score=59.10 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=108.5
Q ss_pred CceeEEEecCCCCcEEEEE---eCC-CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-Eec
Q 010997 141 GEVNRIRELPQNTKIVATH---TDS-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGG 215 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~---~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~ 215 (496)
..+..-+|+| ++..++-. ... ..++++|+.++.. ..+..+.++.. .-+|+|||++|+ +..
T Consensus 193 ~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~----------~~i~~~~g~~~----~P~fspDG~~l~f~~~ 257 (425)
T COG0823 193 SLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKR----------PVILNFNGNNG----APAFSPDGSKLAFSSS 257 (425)
T ss_pred cceeccccCc-CCCceEEEEEecCCCceEEEEeccCCcc----------ceeeccCCccC----CccCCCCCCEEEEEEC
Confidence 3455567788 44433322 222 4699999988832 22334455543 568999998655 666
Q ss_pred CCCcEEEEe--cCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 216 KDKSVVLWS--IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 216 ~Dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
.||...||- +..... ..+..-.+.-..=.|+|+|..+
T Consensus 258 rdg~~~iy~~dl~~~~~-----------------------------------------~~Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 258 RDGSPDIYLMDLDGKNL-----------------------------------------PRLTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred CCCCccEEEEcCCCCcc-----------------------------------------eecccCCccccCccCCCCCCEE
Confidence 788766664 443221 1122212222245799999777
Q ss_pred EEEEcCCCeEEEE--EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CCc--EEEEeCCCCCCCCCCCCceEe
Q 010997 294 FCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNS--VRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 294 l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~--i~iwd~~~~~~~~~~~~~~~~ 368 (496)
+++.+..|.-.|| |..... .. ........-..-.|+| ++.+|+..+. +|. |.+.|+.+ +..++.+
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~--~~-riT~~~~~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~------~~~~~~l 366 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQ--VT-RLTFSGGGNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLAS------GGKIRIL 366 (425)
T ss_pred EEEeCCCCCcceEEECCCCCc--ee-EeeccCCCCcCccCCC-CCCEEEEEeccCCceeeEEeccCC------CCcEEEc
Confidence 7777777765555 444443 21 1212222222778999 8888877664 344 56666655 2223333
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~ 403 (496)
. +......-.|.|++..++-+++.-+.=.++.+.
T Consensus 367 t-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s 400 (425)
T COG0823 367 T-STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVS 400 (425)
T ss_pred c-ccccCCCCCcCCCCceEEEeccCCCCceEEEee
Confidence 2 344455667888888665444433233333333
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.48 E-value=0.0063 Score=60.80 Aligned_cols=111 Identities=11% Similarity=0.120 Sum_probs=64.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
++.|.++|.++..... ...+..+. -......+.++|||+++++++..+..|.|.|+.+......... .+...+.
T Consensus 295 gn~V~VID~~t~~~~~-~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~----~~~~~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAG-SALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI----KPRDAVV 368 (635)
T ss_pred CCEEEEEECCccccCC-cceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----CccceEE
Confidence 3457777766510000 12233332 3455678999999999998998899999999988543221110 1111111
Q ss_pred EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
....-...-...+|.++|. .+.|.-- |..|-.|++..
T Consensus 369 aevevGlGPLHTaFDg~G~-aytslf~-------dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELGLGPLHTAFDGRGN-AYTTLFL-------DSQIVKWNIEA 405 (635)
T ss_pred EeeccCCCcceEEECCCCC-EEEeEee-------cceeEEEehHH
Confidence 1111122345678888764 5554444 58999999984
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.00079 Score=66.40 Aligned_cols=118 Identities=15% Similarity=0.249 Sum_probs=85.4
Q ss_pred CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 325 ~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.|.--+++. .+.+++.|+.-|.+.+|+..... .......+..+.+..+..|++.. ++|.|+..|.|.++-+..
T Consensus 35 ~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~-----~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 35 RVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGE-----MRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNK 107 (726)
T ss_pred eEEEEEeec-CCceEEEecccceEEEEecCchh-----hhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhc
Confidence 333334444 78999999999999999977511 12233334556677777888776 678999999999999887
Q ss_pred CCcccCCCCCCCCCCCeeEEEe---cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 405 VGKKVEQGPRTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
. .|+..+... ..|...|++++|++++..++ +|...|.|..-.+..
T Consensus 108 ~------------~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y--------sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 E------------LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY--------SGDSQGKVVLTELDS 155 (726)
T ss_pred c------------CCCcceeeccccccCCceEEEEEecccccEEe--------ecCCCceEEEEEech
Confidence 4 333333332 23667999999999999888 777789999988873
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.46 E-value=0.027 Score=49.19 Aligned_cols=67 Identities=7% Similarity=-0.083 Sum_probs=46.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~ 232 (496)
+++++.|+..|.+++-+..++. ....+..-.. .-......+++..+..|+.|+.....|..+..+..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs------------~~w~f~~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGS------------QIWNFVILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecchh------------heeeeeehhh-hccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 4579999999999999999883 2222222221 11123345678899999999999999998765543
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.45 E-value=0.0077 Score=45.70 Aligned_cols=102 Identities=11% Similarity=0.134 Sum_probs=68.6
Q ss_pred eeEEEEc---cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 281 VEDVTFC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 281 v~~l~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
|++|++. .+|.+.|+.|++|..|++|+-.. .+... .-.+.|++++-.. ...|+.|-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei-~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEI-TETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEE-ecccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence 5566654 45567899999999999997432 33333 3456788887775 57899999999999998653
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcC---CCCCEEEEEeCCCcEE
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLN 398 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp---~~~~llas~~~dg~i~ 398 (496)
.+...+. +..++++++.. +|..-|++|-.+|.|-
T Consensus 73 ------RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ------RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ------eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3344443 23356665543 3333356888888774
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.0038 Score=64.62 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=94.3
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCC-eEEEEecC----CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc----e
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNP----LDDNLILTGSADNSVRMFDRRNLTSNGVGSPI----N 366 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~i~~sp----~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~----~ 366 (496)
.......|+-.|+..++ ++.....+... |..++-.. -.......|-.+..+..||.|-.. .+.+ +
T Consensus 499 ~~~~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----~k~v~~~~k 572 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGK--VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----NKLVDSQSK 572 (794)
T ss_pred cCCCCCceEEEecCCCc--EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC----Cceeecccc
Confidence 33456788889999888 66666665543 55554321 123445667778899999999632 1122 1
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
.+ ......+|++-+.+|. ||.|+.+|.||+||--. . .-...+.|-..+|..|..+.+|.|+|
T Consensus 573 ~Y-~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g--~-------------~AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 573 QY-SSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLG--K-------------RAKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred cc-ccCCCceEEEecCCce--EEEEeCCCcEEeecccc--h-------------hhhhcCCCCCCCeeEEEecCCCcEEE
Confidence 12 2345678888888885 57999999999999322 1 11122456678999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEeec
Q 010997 447 VSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
|+|. ..|.|++.
T Consensus 635 aTc~---------tyLlLi~t 646 (794)
T PF08553_consen 635 ATCK---------TYLLLIDT 646 (794)
T ss_pred Eeec---------ceEEEEEE
Confidence 9986 56777765
No 341
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.40 E-value=0.08 Score=50.90 Aligned_cols=276 Identities=15% Similarity=0.176 Sum_probs=135.3
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccc-cCCCCCCCCceEEecCCC--------CcceeeeecCCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA-VLGATNSRPDLILTGHQD--------NAEFALAMCPTEPY 210 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~l~~h~~--------~~v~~l~~~p~~~~ 210 (496)
...+....|+| +++.+|-.. ++.|.+++..++....- ..+ ....+.|-.+ ..-.++-|+||+++
T Consensus 42 ~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-----~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~ 114 (353)
T PF00930_consen 42 PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDG-----EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY 114 (353)
T ss_dssp ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES-------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE
T ss_pred ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEecccc-----ceeEEcCccceeccccccccccceEECCCCCE
Confidence 56788999999 788887765 46899998876622111 111 0011111110 11357889999998
Q ss_pred eEEecC-CCcEEEEecCCccccccCCccc--c--ccCCCCCceeccCCCCCCCCCCCCCCCCcCC--ee---eeecCCCc
Q 010997 211 VLSGGK-DKSVVLWSIQDHITSSATDPAT--A--KSAGSSGSIIKQSPKPGDGNDKAADGPSVGP--RG---IYNGHEDT 280 (496)
Q Consensus 211 l~sg~~-Dg~i~iwd~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~h~~~ 280 (496)
|+.... +..|..+.+-.........+.. . +..+... ....+.+++....+. +. .+..-..-
T Consensus 115 la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n---------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~y 185 (353)
T PF00930_consen 115 LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN---------PRVSLFVVDLASGKTTELDPPNSLNPQDYY 185 (353)
T ss_dssp EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS------------EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC---------CceEEEEEECCCCcEEEeeeccccCCCccC
Confidence 887654 4555555443211110000000 0 0000000 000111111112111 11 11233556
Q ss_pred eeEEEEccCCCceEEE-EcCC---CeEEEEEccCCCccceeeeccCCCCe---EEEEec-CCCCcEEEEEcCCCcEEEEe
Q 010997 281 VEDVTFCPSSAQEFCS-VGDD---SCLILWDARVGTSPVIKVEKAHDADL---HCVDWN-PLDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v---~~i~~s-p~~~~~l~sgs~dg~i~iwd 352 (496)
+..+.|.+++..+++. ...+ ..+.++|..++....+.. ......| ..+.|. +.+..+|.....+|.-+|+-
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 8899999998423333 2332 246777887766332222 1222222 345554 53566666666888666554
Q ss_pred CCCCCCCCCCCCceEeccCCCCEEE-EEEcCCCCCEEEEEeCCC--cEEEEECCCC-CcccCCCCCCCCCCCeeEEEecC
Q 010997 353 RRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG--LLNIWDYEKV-GKKVEQGPRTTNYPAGLFFQHAG 428 (496)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~~~~llas~~~dg--~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 428 (496)
+... +.....+....-.|.. +.|++++..|+.++..++ .-.||-+... + ..+..+..
T Consensus 265 ~~~~-----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~--------------~~~~~LT~ 325 (353)
T PF00930_consen 265 YDLD-----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG--------------GEPKCLTC 325 (353)
T ss_dssp EETT-----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--------------TEEEESST
T ss_pred Eccc-----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--------------CCeEeccC
Confidence 4432 2335566656667755 778898887777777633 4444444332 1 11222332
Q ss_pred CCCCcceEEecCCCCcEEEEecC
Q 010997 429 HRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 429 h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
....-..+.|+|++.+++.+++.
T Consensus 326 ~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 326 EDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp TSSTTEEEEE-TTSSEEEEEEES
T ss_pred CCCCceEEEECCCCCEEEEEEcC
Confidence 22222589999999999988764
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0069 Score=60.03 Aligned_cols=156 Identities=10% Similarity=0.143 Sum_probs=100.2
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecC
Q 010997 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ 226 (496)
Q Consensus 147 ~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~ 226 (496)
++.. ..++++.|+..|.+++|+-..+.... ....+-. ..+..+..+++..++|.|+..|.|.++-++
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~-----------~~~~~~~-~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK-----------LKNEGAT-GITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhc-----------ccccCcc-ceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 3344 77899999999999999988773221 1222222 256677888888899999999999999887
Q ss_pred CccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee-eecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997 227 DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (496)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (496)
...... ...+.. -..|...|++++|++++ ..+++|...|.|.+
T Consensus 107 ~~~p~~-----------------------------------~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 107 KELPRD-----------------------------------LDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVL 150 (726)
T ss_pred ccCCCc-----------------------------------ceeeccccccCCceEEEEEecccc-cEEeecCCCceEEE
Confidence 522100 000011 12378899999999999 78999999999999
Q ss_pred EEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 306 WDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 306 wd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
-.+..... -....+..-.+.|..+... ..+|++++.-.. .++++..
T Consensus 151 ~~L~s~~~~~~~~q~il~~ds~IVQlD~~---q~~LLVStl~r~-~Lc~tE~ 198 (726)
T KOG3621|consen 151 TELDSRQAFLSKSQEILSEDSEIVQLDYL---QSYLLVSTLTRC-ILCQTEA 198 (726)
T ss_pred EEechhhhhccccceeeccCcceEEeecc---cceehHhhhhhh-heeecch
Confidence 88776210 0111222345677777765 344444444333 3445443
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0014 Score=63.92 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=66.5
Q ss_pred CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE-EEEEcCCCCCEEEEEeCCCcEEEE
Q 010997 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIW 400 (496)
Q Consensus 322 ~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~-~l~~sp~~~~llas~~~dg~i~iw 400 (496)
-...|..+.|+| .-.++|++..+|.|.+..+. ...+.++..|...++ +++|.|||. ++|.|-.||+|++.
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLH 89 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEec-------cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEE
Confidence 345678899999 89999999999999999887 377888887777777 999999998 78999999999999
Q ss_pred ECCCCC
Q 010997 401 DYEKVG 406 (496)
Q Consensus 401 d~~~~~ 406 (496)
|+.+++
T Consensus 90 Dve~~~ 95 (665)
T KOG4640|consen 90 DVEKGG 95 (665)
T ss_pred EccCCC
Confidence 999863
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.00066 Score=57.93 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=69.3
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
..++.|+.+|.|.+|....... ...........|-++--.-.++.+..++..||.|+.|++.- .+.+.....|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p------~k~~g~~g~h 143 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP------NKVLGYVGQH 143 (238)
T ss_pred ceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeecccc------Cceeeeeccc
Confidence 5699999999999998763321 11111122233333333332566899999999999999886 5556666666
Q ss_pred C-CCEEEEEEcCCCCCEEEEE--eCCCcEEEEECCCC
Q 010997 372 S-AAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKV 405 (496)
Q Consensus 372 ~-~~i~~l~~sp~~~~llas~--~~dg~i~iwd~~~~ 405 (496)
. .++..+..+..++ +++.+ |.|..++.|++...
T Consensus 144 ~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 144 NFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cCCCcceeEEecCCc-eEEeeccccchhhhhcchhhh
Confidence 6 5555665665565 35566 77888888888764
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.28 E-value=0.0006 Score=40.72 Aligned_cols=38 Identities=32% Similarity=0.754 Sum_probs=32.9
Q ss_pred CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd 401 (496)
.++..+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 45677788999999999999886 567999999999996
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.26 E-value=0.062 Score=52.78 Aligned_cols=226 Identities=11% Similarity=0.147 Sum_probs=108.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
..-....+.++| ++++++. +.||.-.|+...... ....| ......|.+.++ +|+-...+
T Consensus 31 ~~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r--------------~k~~G----~g~~~vw~~~n~-yAv~~~~~ 89 (443)
T PF04053_consen 31 CEIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWR--------------NKAFG----SGLSFVWSSRNR-YAVLESSS 89 (443)
T ss_dssp -SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTE--------------EEEEE----E-SEEEE-TSSE-EEEE-TTS
T ss_pred CCcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCc--------------ccccC----ceeEEEEecCcc-EEEEECCC
Confidence 444588999999 8888877 556788888843331 11122 235778988554 66666688
Q ss_pred cEEEE-ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 219 SVVLW-SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 219 ~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
+|.|+ +++.... ..+.. ...+..|-. | .+|+..
T Consensus 90 ~I~I~kn~~~~~~-----------------------------------------k~i~~-~~~~~~If~---G-~LL~~~ 123 (443)
T PF04053_consen 90 TIKIYKNFKNEVV-----------------------------------------KSIKL-PFSVEKIFG---G-NLLGVK 123 (443)
T ss_dssp -EEEEETTEE-TT-----------------------------------------------SS-EEEEE----S-SSEEEE
T ss_pred eEEEEEcCccccc-----------------------------------------eEEcC-CcccceEEc---C-cEEEEE
Confidence 99996 4432110 01111 112333322 5 556655
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-----CCCCCCCCceEeccCC
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL-----TSNGVGSPINKFEGHS 372 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~-----~~~~~~~~~~~~~~h~ 372 (496)
+. +.|.+||..+++ .+.... -.+|..+.|++ ++.++|..+.+ .+.|++.... ...+....+..+..-.
T Consensus 124 ~~-~~i~~yDw~~~~--~i~~i~--v~~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~ 196 (443)
T PF04053_consen 124 SS-DFICFYDWETGK--LIRRID--VSAVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS 196 (443)
T ss_dssp ET-TEEEEE-TTT----EEEEES--S-E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-
T ss_pred CC-CCEEEEEhhHcc--eeeEEe--cCCCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec
Confidence 54 489999999887 555543 23489999999 89999998765 5777775541 0000001334443335
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
..|.+.+|..+ .++.|.. . .++. +-.+ + ...+..+ ..++.=+...+....++ .
T Consensus 197 ~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~G-e------------~~~i~~l---d~~~yllgy~~~~~~ly-~---- 249 (443)
T PF04053_consen 197 ERIKSGCWVED--CFIYTTS-N-HLKY--LVNG-E------------TGIIAHL---DKPLYLLGYLPKENRLY-L---- 249 (443)
T ss_dssp S--SEEEEETT--EEEEE-T-T-EEEE--EETT-E------------EEEEEE----SS--EEEEEETTTTEEE-E----
T ss_pred ceeEEEEEEcC--EEEEEcC-C-eEEE--EEcC-C------------cceEEEc---CCceEEEEEEccCCEEE-E----
Confidence 67889999876 2333333 3 6665 3221 1 1222222 23455566666444444 2
Q ss_pred CCCCCCCCeEEEeecC
Q 010997 453 CDSTGGGGTLQIWRMS 468 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~ 468 (496)
...|+.|..+.+.
T Consensus 250 ---~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 250 ---IDRDGNVISYELD 262 (443)
T ss_dssp ---E-TT--EEEEE--
T ss_pred ---EECCCCEEEEEEC
Confidence 2234778877776
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0017 Score=63.37 Aligned_cols=94 Identities=14% Similarity=0.292 Sum_probs=75.1
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeE-EEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
...+.-+.|+|.- .++|++..+|.|.++.+.-. .+.++.-+...++ +++|.| +|.+||.|-.||+|++.|..+
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~q---Rlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~- 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLNWQ---RLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK- 93 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEeccc---eeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC-
Confidence 3467889999988 79999999999999988733 3556655677777 999999 899999999999999999998
Q ss_pred CCCCCCCCceEe-ccCCCCEEEEEEcC
Q 010997 357 TSNGVGSPINKF-EGHSAAVLCVQWSP 382 (496)
Q Consensus 357 ~~~~~~~~~~~~-~~h~~~i~~l~~sp 382 (496)
+..+..+ ..-...|.++-|+|
T Consensus 94 -----~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 -----GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred -----CCceeccccccccchheeeccc
Confidence 5555552 22456788888864
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.22 E-value=0.019 Score=57.55 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=71.9
Q ss_pred ccCCCceEEEEcCCCeEEEEEccC----CCccceeeeccCCCCeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARV----GTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~dg~i~iwd~~~~~~~~~ 361 (496)
.++|. +... .++.|.+.|.++ +. ..... -.-......++++| ++.++++ +..+.+|.++|+.+......
T Consensus 285 vkdGK-~~~V--~gn~V~VID~~t~~~~~~-~v~~y-IPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 285 VKAGK-FKTI--GGSKVPVVDGRKAANAGS-ALTRY-VPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred hhCCC-EEEE--CCCEEEEEECCccccCCc-ceEEE-EECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 45663 3333 367899999987 22 12322 24556778899999 7776655 55689999999998431000
Q ss_pred ------CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 362 ------GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 362 ------~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
...+.+..- .......+|.++|. .+.|-..|..|..||+..
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 011222222 23345788999986 677888899999999986
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.00085 Score=40.00 Aligned_cols=36 Identities=33% Similarity=0.648 Sum_probs=32.0
Q ss_pred eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEE
Q 010997 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 307 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 307 (496)
...+..|...|.++.|++.+ .++++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 46677889999999999988 7899999999999996
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.24 Score=48.06 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=122.2
Q ss_pred eeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 200 FALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 200 ~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
.+++.++.++ .+++...++.|.+.|........ ....+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~---------------------------------------~~~vG-- 115 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG---------------------------------------SIPVG-- 115 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceee---------------------------------------Eeeec--
Confidence 5678888877 45555557899999955432210 00111
Q ss_pred CceeEEEEccCCCceEEEEc--CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCC
Q 010997 279 DTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRN 355 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~ 355 (496)
.....++++|++..+.++-. .++++.+.|..+.. ..........+ ..++++| ++..+ ++-..++.|.++|...
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--VTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--EEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCC
Confidence 14568899999966666655 47889999887776 33333333334 8999999 77744 4455789999999776
Q ss_pred CCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEEECCCCCcccCCCCCCCCCCCeeEEE--ecCCCC
Q 010997 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGHRD 431 (496)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~ 431 (496)
..... ........ -......+.++|++.+++++...+ +.+.+.|.... ..... ..+-.
T Consensus 192 ~~v~~-~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~---------------~v~~~~~~~~~~- 253 (381)
T COG3391 192 NSVVR-GSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG---------------NVTATDLPVGSG- 253 (381)
T ss_pred cceec-cccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc---------------eEEEeccccccC-
Confidence 22100 00000122 223346889999999777666554 58888887763 11111 11111
Q ss_pred CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
....+..+|++.++.+.-+. .+.+.+-|..
T Consensus 254 ~~~~v~~~p~g~~~yv~~~~-------~~~V~vid~~ 283 (381)
T COG3391 254 APRGVAVDPAGKAAYVANSQ-------GGTVSVIDGA 283 (381)
T ss_pred CCCceeECCCCCEEEEEecC-------CCeEEEEeCC
Confidence 35668889988887765443 2778887776
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.17 E-value=0.19 Score=46.33 Aligned_cols=246 Identities=12% Similarity=0.120 Sum_probs=126.8
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
.++.|+.|+.+| ++++++.... .+...... . .|..+...|+-+.|+.-+ |+.+.++++..-...
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~-----------~~~~i~~~--~-~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS-----------KPTRILKL--S-SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc-----------cceeEeec--c-eEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence 566888899998 9999993221 11122211 1 378888888877666554 699999999754322
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE--EccCCCceEEEEcCCCeEEEEEcc
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT--FCPSSAQEFCSVGDDSCLILWDAR 309 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s~~~dg~i~iwd~~ 309 (496)
....+... ...............+...+ -...+ ...+.+.....|.+|...
T Consensus 70 ~~~~~~~~--------------------------~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~ 122 (275)
T PF00780_consen 70 STSAPLAF--------------------------PKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWN 122 (275)
T ss_pred cccccccc--------------------------cccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEE
Confidence 11100000 00000000011122333333 11233 334444455699999887
Q ss_pred CCCc---cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc----------CCCCEE
Q 010997 310 VGTS---PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----------HSAAVL 376 (496)
Q Consensus 310 ~~~~---~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----------h~~~i~ 376 (496)
.... .....+ .-...+.+++|. ++.++.|..++ ..+.|+.+.. ...+..... ...++.
T Consensus 123 ~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~v~~~~~-f~~idl~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 123 DPRNSFSKLLKEI-SLPDPPSSIAFL---GNKICVGTSKG-FYLIDLNTGS----PSELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred CCcccccceeEEE-EcCCCcEEEEEe---CCEEEEEeCCc-eEEEecCCCC----ceEEeCccCCcchhhhcccCCCceE
Confidence 6421 122222 445888999997 46777776554 7888988622 111111111 122344
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe-eEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG-LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 455 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s 455 (496)
.+... ++.+ |++. |..-.+.|.... +.. ..... .....++++. .+++++...
T Consensus 194 ~~~~~-~~e~-Ll~~--~~~g~fv~~~G~-------------~~r~~~i~W---~~~p~~~~~~--~pyli~~~~----- 246 (275)
T PF00780_consen 194 IFQLS-DNEF-LLCY--DNIGVFVNKNGE-------------PSRKSTIQW---SSAPQSVAYS--SPYLIAFSS----- 246 (275)
T ss_pred EEEeC-CceE-EEEe--cceEEEEcCCCC-------------cCcccEEEc---CCchhEEEEE--CCEEEEECC-----
Confidence 44443 3453 3332 444444554431 111 11111 2245666664 467775433
Q ss_pred CCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997 456 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFK 486 (496)
Q Consensus 456 gg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~ 486 (496)
+.|.||++. ++++++++....
T Consensus 247 ----~~iEV~~~~------~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 247 ----NSIEVRSLE------TGELVQTIPLPN 267 (275)
T ss_pred ----CEEEEEECc------CCcEEEEEECCC
Confidence 679999999 566666665443
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.09 E-value=0.35 Score=47.72 Aligned_cols=247 Identities=13% Similarity=0.068 Sum_probs=125.1
Q ss_pred eeEEEecCCCCcEEEEE-eCCC----cEEEEeCCCCCCccccCCCCCCCCce-EEecCCCCcceeeeecCCCCceEEecC
Q 010997 143 VNRIRELPQNTKIVATH-TDSP----DVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~-~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
+...+++| ++++||-+ +..| .|+|+|+.++. .+. .+... ....+.|.++++.|+-...
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~------------~l~d~i~~~---~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGK------------FLPDGIENP---KFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTE------------EEEEEEEEE---ESEEEEECTTSSEEEEEEC
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCc------------CcCCccccc---ccceEEEeCCCCEEEEEEe
Confidence 44667889 66766644 4445 59999999882 111 12221 1123999999886554432
Q ss_pred C-----------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCc--eeE
Q 010997 217 D-----------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT--VED 283 (496)
Q Consensus 217 D-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~ 283 (496)
+ ..|..|.+.+.... -...+...... ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~--------------------------------------d~lvfe~~~~~~~~~~ 231 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSE--------------------------------------DELVFEEPDEPFWFVS 231 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG---------------------------------------EEEEC-TTCTTSEEE
T ss_pred CcccccccCCCCcEEEEEECCCChHh--------------------------------------CeeEEeecCCCcEEEE
Confidence 2 23777777654221 01233333322 567
Q ss_pred EEEccCCCceEEEEcCC---CeEEEEEccCC--CccceeeeccCCCCeE-EEEecCCCCcEEEEEc---CCCcEEEEeCC
Q 010997 284 VTFCPSSAQEFCSVGDD---SCLILWDARVG--TSPVIKVEKAHDADLH-CVDWNPLDDNLILTGS---ADNSVRMFDRR 354 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~d---g~i~iwd~~~~--~~~~~~~~~~~~~~v~-~i~~sp~~~~~l~sgs---~dg~i~iwd~~ 354 (496)
+..++++..+++..... ..+.+.|+... .......+......+. .+... ++.+++... .++.|.-.++.
T Consensus 232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETT
T ss_pred EEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccc
Confidence 88899985555544433 34778888764 1112233333333443 34433 344443332 24677777877
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECC-CCCcccCCCCCCCCCCCeeEEEe-cCCC
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYE-KVGKKVEQGPRTTNYPAGLFFQH-AGHR 430 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~h~ 430 (496)
.... ......+-.+...+.-..+...+.+|++....++ .|+++++. .. ..... ..-.
T Consensus 310 ~~~~---~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~----------------~~~~~~~p~~ 370 (414)
T PF02897_consen 310 DPSP---AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK----------------ESREIPLPEA 370 (414)
T ss_dssp STSG---GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE----------------EEEEEESSSS
T ss_pred cccc---ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc----------------EEeeecCCcc
Confidence 7321 0112245556664443444445666777776665 57888887 31 11111 1112
Q ss_pred CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 431 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 431 ~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+.|..+...++.+.+.++.+.- -.-+++..||+.
T Consensus 371 g~v~~~~~~~~~~~~~~~~ss~----~~P~~~y~~d~~ 404 (414)
T PF02897_consen 371 GSVSGVSGDFDSDELRFSYSSF----TTPPTVYRYDLA 404 (414)
T ss_dssp SEEEEEES-TT-SEEEEEEEET----TEEEEEEEEETT
T ss_pred eEEeccCCCCCCCEEEEEEeCC----CCCCEEEEEECC
Confidence 3455666666666666665522 223567777776
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.27 Score=47.78 Aligned_cols=198 Identities=17% Similarity=0.201 Sum_probs=125.2
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceE-EecCCCCcceeeeecCCCCceEEecC---CC
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGK---DK 218 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg 218 (496)
-..++.++...+..++...+..|.+.|..+.. .... ..+. . ...++++|+++.+..+.. ++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~------------~~~~~~vG~-~--P~~~~~~~~~~~vYV~n~~~~~~ 140 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT------------VLGSIPVGL-G--PVGLAVDPDGKYVYVANAGNGNN 140 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccc------------eeeEeeecc-C--CceEEECCCCCEEEEEecccCCc
Confidence 34667777566677777778899999966552 2222 2233 2 368999999976665544 67
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
++.+.|..+..... ....-..+ ..+++.|++...+++-.
T Consensus 141 ~vsvid~~t~~~~~----------------------------------------~~~vG~~P-~~~a~~p~g~~vyv~~~ 179 (381)
T COG3391 141 TVSVIDAATNKVTA----------------------------------------TIPVGNTP-TGVAVDPDGNKVYVTNS 179 (381)
T ss_pred eEEEEeCCCCeEEE----------------------------------------EEecCCCc-ceEEECCCCCeEEEEec
Confidence 88888876543321 11111123 78999999965666667
Q ss_pred CCCeEEEEEccCCCcccee-e---eccCCCCeEEEEecCCCCcEEEEEc-CC--CcEEEEeCCCCCCCCCCCCceE-ecc
Q 010997 299 DDSCLILWDARVGTSPVIK-V---EKAHDADLHCVDWNPLDDNLILTGS-AD--NSVRMFDRRNLTSNGVGSPINK-FEG 370 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~-~---~~~~~~~v~~i~~sp~~~~~l~sgs-~d--g~i~iwd~~~~~~~~~~~~~~~-~~~ 370 (496)
.++.|.+.|..... ... . ...-......+.++| ++..+.+.. .+ +.+...|... +..... +..
T Consensus 180 ~~~~v~vi~~~~~~--v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~ 250 (381)
T COG3391 180 DDNTVSVIDTSGNS--VVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPV 250 (381)
T ss_pred CCCeEEEEeCCCcc--eeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCC------ceEEEecccc
Confidence 89999999976654 221 0 112233456788899 776544433 33 5888888887 333332 111
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
-......+..+|+|..+.+.-+..+.+.+-|....
T Consensus 251 ~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 251 GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred ccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 11145678999999977655565688888888763
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.28 Score=48.12 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
+....+....++.+.+.+-.. . ..+. ..+++..++.||++++ +|.-..+|.+.|....-
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~------~---~~i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENS------F---KQID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDF 247 (410)
T ss_pred CcceEEEEecCCEEEEEEccc------c---cccc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECcc
Confidence 344444445556666555333 1 1122 2468999999999995 67788889998887544
No 355
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.016 Score=60.77 Aligned_cols=162 Identities=9% Similarity=0.091 Sum_probs=102.1
Q ss_pred ceEEecCCCCcceeeeecCCCCceE--EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997 188 DLILTGHQDNAEFALAMCPTEPYVL--SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (496)
Q Consensus 188 ~~~l~~h~~~~v~~l~~~p~~~~l~--sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (496)
...+.-|..-++..+...+|+...+ ..+.+-.|..+|++.-.........
T Consensus 92 ~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~---------------------------- 143 (1405)
T KOG3630|consen 92 NLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV---------------------------- 143 (1405)
T ss_pred ccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc----------------------------
Confidence 3556666666677777778876433 3344557889998753221110000
Q ss_pred CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
.............-..++.|+|.-+..++.+..|+.|++..+..... .... .......+|++|+| .+..++.|...
T Consensus 144 -pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~-~v~s-~p~t~~~Tav~WSp-rGKQl~iG~nn 219 (1405)
T KOG3630|consen 144 -PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ-NVTS-FPVTNSQTAVLWSP-RGKQLFIGRNN 219 (1405)
T ss_pred -ccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh-hhcc-cCcccceeeEEecc-ccceeeEecCC
Confidence 00000111122344568899998777788899999999987765442 2222 24567789999999 99999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCceEecc----CCCCEEEEEEcCCCCCEE
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEG----HSAAVLCVQWSPDKSSVF 388 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~ll 388 (496)
|++.-|-..- .....+.. ....|.+|+|-....+++
T Consensus 220 Gt~vQy~P~l-------eik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 220 GTEVQYEPSL-------EIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred CeEEEeeccc-------ceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 9999887553 21122111 146799999988877544
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0016 Score=65.65 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=62.1
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
.+++++|+|.. -+|+.|-.-|.+.+|...+.+ .......|..+|..+.||+ +|..++++..-|.|.+|....
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e--~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE--THTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCCce--eeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 35679999987 788899899999999987766 4455568999999999999 999999999999999998763
No 357
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.14 Score=48.90 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=63.7
Q ss_pred CCeEEEEEccCCCccceeeeccCCC--CeEEEEe--cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-------
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDA--DLHCVDW--NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF------- 368 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~i~~--sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~------- 368 (496)
..++++||+.+.+ .++++.-... ....|.| +|....-++.+...++|..|--..... -..+.+..+
T Consensus 221 G~~l~vWD~~~r~--~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWSTRK--LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETTTTE--EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--S
T ss_pred cCeEEEEECCCCc--EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCc
Confidence 4689999999887 4444432222 2334544 553333455444555555553321000 000111111
Q ss_pred ----------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec--C--------
Q 010997 369 ----------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA--G-------- 428 (496)
Q Consensus 369 ----------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 428 (496)
..-..-|+.|..|.|.++|++++-.+|.|+.||++.... +.+..+.. |
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~------------Pkl~gqv~lGG~~~~~~~~ 365 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN------------PKLVGQVFLGGSIRKGDHP 365 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-------------EEEEEEE-BTTTT-B--T
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC------------CcEEeEEEECcEeccCCCc
Confidence 112356899999999999998998999999999988522 23333211 1
Q ss_pred ------CCCCcceEEecCCCCcEEEEec
Q 010997 429 ------HRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 429 ------h~~~V~~~~~~p~~~~l~~s~s 450 (496)
-.+...-+..|.+|+.+.+|.|
T Consensus 366 ~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 366 VVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TS------S----EEE-TTSSEEEEE--
T ss_pred cccccccCCCCCeEEEccCCeEEEEEee
Confidence 0122355778888888888765
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.06 E-value=0.026 Score=42.92 Aligned_cols=68 Identities=18% Similarity=0.306 Sum_probs=50.8
Q ss_pred eEEEEecCCC---CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997 326 LHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 326 v~~i~~sp~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~ 402 (496)
|+++++...+ .+.|++|+.|..||+|+-. ..+.++.. ...|++++-...+. |+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--------e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--------EIVAEITE-TDKVTSLCSLGGGR--FAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--------cEEEEEec-ccceEEEEEcCCCE--EEEEecCCEEEEEeC
Confidence 5666665433 3789999999999999855 45666663 56677887776654 678889999999986
Q ss_pred CC
Q 010997 403 EK 404 (496)
Q Consensus 403 ~~ 404 (496)
..
T Consensus 71 ~~ 72 (111)
T PF14783_consen 71 SQ 72 (111)
T ss_pred cc
Confidence 54
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.11 Score=49.22 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=72.1
Q ss_pred cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
...++|++++-. .+ . |+.+ .++.|.+|++...+.-...........+.++... +++++.|.....|.++..+.
T Consensus 86 ~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 86 EVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEET
T ss_pred eecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEc
Confidence 346789988876 33 4 3333 3489999999887711111122233456666654 56999999988898885554
Q ss_pred CCCCCCCCCceEec--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 356 LTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 356 ~~~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
. ...+..+. .....++++.|-+++. .++.+..+|.+.++....
T Consensus 159 ~-----~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 159 E-----NNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp T-----TE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred c-----CCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 1 12233332 2345688999987776 566899999999999864
No 360
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.03 E-value=0.04 Score=52.94 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=35.5
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~ 228 (496)
.+.+.|||+.++... ++ ... . ..+....|+|+|+.++-.. ++.|.+++..++
T Consensus 22 ~~~y~i~d~~~~~~~----------~l--~~~-~-~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT----------PL--TPP-P-PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp EEEEEEEETTTTEEE----------ES--S-E-E-TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred ceeEEEEecCCCceE----------EC--cCC-c-cccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 457999999987211 11 111 2 2467899999999888775 788999988665
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.98 E-value=0.079 Score=50.22 Aligned_cols=195 Identities=12% Similarity=0.172 Sum_probs=102.4
Q ss_pred CcEEEEEeC----------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997 153 TKIVATHTD----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (496)
Q Consensus 153 ~~~lat~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i 222 (496)
..+|+.|+. .|.|.++++...+.. ..+..........++|++++-- ++ +|+.|. .+.|.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~-------~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN-------NFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS------------EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEccccc-------ceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEE
Confidence 567777654 288999999874110 0011122222223478888765 34 444444 589999
Q ss_pred EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe
Q 010997 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 302 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (496)
|++..... ......+ .....+.++... + ++++.|.....
T Consensus 112 ~~l~~~~~-------------------------------------l~~~~~~-~~~~~i~sl~~~--~-~~I~vgD~~~s 150 (321)
T PF03178_consen 112 YDLDNSKT-------------------------------------LLKKAFY-DSPFYITSLSVF--K-NYILVGDAMKS 150 (321)
T ss_dssp EEEETTSS-------------------------------------EEEEEEE--BSSSEEEEEEE--T-TEEEEEESSSS
T ss_pred EEccCccc-------------------------------------chhhhee-cceEEEEEEecc--c-cEEEEEEcccC
Confidence 99975430 0011111 122356666655 3 57888888888
Q ss_pred EEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC-CC-CceE-ecc-CCCCEEE
Q 010997 303 LILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GS-PINK-FEG-HSAAVLC 377 (496)
Q Consensus 303 i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~-~~~~-~~~-h~~~i~~ 377 (496)
+.++..+......... .......++++.|-+ +++.++.+..+|.+.++.......... +. .+.. ..- ....|++
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~ 229 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS 229 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence 8888665432112221 123455688888886 456999999999999998864221111 12 1221 111 3456777
Q ss_pred E---EEcCC--CCC-----EEEEEeCCCcEEE
Q 010997 378 V---QWSPD--KSS-----VFGSSAEDGLLNI 399 (496)
Q Consensus 378 l---~~sp~--~~~-----llas~~~dg~i~i 399 (496)
+ ++.|. +.. .++-++.+|.|-+
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 7 55552 221 2446677888873
No 362
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.95 E-value=0.092 Score=53.64 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=83.4
Q ss_pred ceEEEEcCCC-----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC------cEEEEeCCCCCCCC
Q 010997 292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRNLTSNG 360 (496)
Q Consensus 292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg------~i~iwd~~~~~~~~ 360 (496)
.+.+.||.|| +|-.||.++.+................+.+ ++.+.++|+.++ ++..||..+..
T Consensus 382 ~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~--- 455 (571)
T KOG4441|consen 382 KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT--- 455 (571)
T ss_pred EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc---
Confidence 6888888886 478888888764332222111222222233 688888888664 56788887743
Q ss_pred CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 435 (496)
Q Consensus 361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 435 (496)
+..+..+..-..... ++.- ++ .|++.||.|+. |..||..+. ....+.........+..
T Consensus 456 -W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~-------------~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 456 -WTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETN-------------QWTMVAPMTSPRSAVGV 518 (571)
T ss_pred -eeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCC-------------ceeEcccCccccccccE
Confidence 444444433222222 2222 23 38889998763 666776652 11111111111222222
Q ss_pred EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997 436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 473 (496)
Q Consensus 436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~ 473 (496)
+. .+..+.+.++.| -...-++|..||+....+.
T Consensus 519 ~~---~~~~ly~vGG~~--~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 519 VV---LGGKLYAVGGFD--GNNNLNTVECYDPETDTWT 551 (571)
T ss_pred EE---ECCEEEEEeccc--CccccceeEEcCCCCCcee
Confidence 22 255667766665 4455578888988755443
No 363
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.86 E-value=0.14 Score=50.14 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=59.9
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
..++.++.+|.+..+|..+++ ..-....- .....+... .+..|+.++.+|.|.++|..+ ++.+...+.
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~t------G~~~~~~~~ 363 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGV--ELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINRED------GRFVAQQKV 363 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCc--EEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCC------CCEEEEEEc
Confidence 457777889999999998876 22211111 111122222 256778889999999999988 777766654
Q ss_pred CCCCEEE-EEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997 371 HSAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 371 h~~~i~~-l~~sp~~~~llas~~~dg~i~iwd~ 402 (496)
....+.+ ..+. ++ .|+ .++.||.|..+++
T Consensus 364 ~~~~~~s~P~~~-~~-~l~-v~t~~G~l~~~~~ 393 (394)
T PRK11138 364 DSSGFLSEPVVA-DD-KLL-IQARDGTVYAITR 393 (394)
T ss_pred CCCcceeCCEEE-CC-EEE-EEeCCceEEEEeC
Confidence 3333322 2222 33 354 7788999888764
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.085 Score=49.08 Aligned_cols=199 Identities=10% Similarity=0.096 Sum_probs=103.5
Q ss_pred eeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997 201 ALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (496)
Q Consensus 201 ~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (496)
+-.|.++.. ++.+--..+.|.-|+..++.. ..+....
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-----------------------------------------~~~~~p~- 66 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-----------------------------------------RVFPSPG- 66 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce-----------------------------------------EEEECCC-
Confidence 445777766 455556678888888865432 2222222
Q ss_pred ceeEE-EEccCCCceEEEEcCCCeEEEEEccCCCc-cceeee-cc-CCCCeEEEEecCCCCcEEEEEcC-----------
Q 010997 280 TVEDV-TFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE-KA-HDADLHCVDWNPLDDNLILTGSA----------- 344 (496)
Q Consensus 280 ~v~~l-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~-~~~~v~~i~~sp~~~~~l~sgs~----------- 344 (496)
.+.++ .....+ .|+++.. -+.+++...+.. ...... .+ -....+.+...| ++.+.++...
T Consensus 67 ~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~ 141 (307)
T COG3386 67 GFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERP 141 (307)
T ss_pred CcccceeecCCC--eEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCC
Confidence 22333 333333 4555543 356666644442 111111 11 124567778888 6665554333
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
-|.|..+|. . +..+..+..+-..-+.|+|||+++.++++=+..+.|.-|++....-... .+ ....
T Consensus 142 ~G~lyr~~p-~------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~-------~~-~~~~ 206 (307)
T COG3386 142 TGSLYRVDP-D------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG-------GR-RGFV 206 (307)
T ss_pred cceEEEEcC-C------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC-------Cc-ceEE
Confidence 133333333 2 3444444554555678999999998877777678899888863110000 11 2222
Q ss_pred EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
......+..-.++...+|...++... .-+.|.+|++.
T Consensus 207 ~~~~~~G~PDG~~vDadG~lw~~a~~-------~g~~v~~~~pd 243 (307)
T COG3386 207 DFDEEPGLPDGMAVDADGNLWVAAVW-------GGGRVVRFNPD 243 (307)
T ss_pred EccCCCCCCCceEEeCCCCEEEeccc-------CCceEEEECCC
Confidence 22233445556667666654432211 11378888776
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.78 E-value=0.16 Score=45.56 Aligned_cols=175 Identities=10% Similarity=0.131 Sum_probs=97.5
Q ss_pred eeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-cCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRM 350 (496)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i 350 (496)
..+.+-...+.+++|+|+...++++....+.|..++.. ++ .+.... ......-.|++.. ++.++++.-.++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--VLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--EEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEE
Confidence 34455566799999999876788888889999888864 44 333332 2346788888876 6777777667899999
Q ss_pred EeCCCCCCCCCCCCceEec-----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 351 FDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~-----~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
+++...........+..+. .+...+-.++|+|.+..+| .+-+..-..||.+...... .......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~----------~~~~~~~ 159 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGG----------FDLFVSD 159 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-S----------S--EEEE
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCc----------cceeecc
Confidence 9985422110011111121 3456689999999888777 4555666777777652100 0000110
Q ss_pred ------ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 426 ------HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 426 ------~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.......+.+++++|....+++-..+. ..|.++|..
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es-------~~l~~~d~~ 201 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES-------RLLLELDRQ 201 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTT-------TEEEEE-TT
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCC-------CeEEEECCC
Confidence 112344678899999877766654443 677777754
No 366
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.71 E-value=0.29 Score=45.44 Aligned_cols=165 Identities=13% Similarity=0.142 Sum_probs=82.5
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccceee---eccCCCCe-EEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 362 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v-~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 362 (496)
-|.++.-|.+-|.||.+.-..+....++.... +..-..++ ..-++.. .+..++--+.+|.|+-.|+.... .
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~----~ 217 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDS----A 217 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSS----E
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCc----c
Confidence 35555568888899999999888543222111 11111222 2333333 34455556788999998888622 1
Q ss_pred CCceEecc----------CCCCEEEEEEcCCCCCEEEEEeC-------CC--cEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997 363 SPINKFEG----------HSAAVLCVQWSPDKSSVFGSSAE-------DG--LLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (496)
Q Consensus 363 ~~~~~~~~----------h~~~i~~l~~sp~~~~llas~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (496)
.....+.. ..+.-.-+++++....|++.--. |+ .|-++|+.+. +.+
T Consensus 218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------------krv 282 (342)
T PF06433_consen 218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------------KRV 282 (342)
T ss_dssp EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------------EEE
T ss_pred cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------------eEE
Confidence 11122211 01223345666544444432211 11 2555555553 333
Q ss_pred EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh
Q 010997 424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK 484 (496)
Q Consensus 424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~ 484 (496)
..... ...+.+++.+.+..=++.+.+. .++.|.+||.. +++.++++++
T Consensus 283 ~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~------~~~~l~v~D~~------tGk~~~~~~~ 330 (342)
T PF06433_consen 283 ARIPL-EHPIDSIAVSQDDKPLLYALSA------GDGTLDVYDAA------TGKLVRSIEQ 330 (342)
T ss_dssp EEEEE-EEEESEEEEESSSS-EEEEEET------TTTEEEEEETT------T--EEEEE--
T ss_pred EEEeC-CCccceEEEccCCCcEEEEEcC------CCCeEEEEeCc------CCcEEeehhc
Confidence 33321 2357789998877545543322 24899999999 6666655543
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.0086 Score=62.27 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
-...++.|++.|.|-..|++.. -.+.+.-..-.++|++++|+.+|. +++.|-.+|.|.+||+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC
Confidence 4567899999999999998862 122333344578999999999998 4668888999999999984
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.41 Score=43.12 Aligned_cols=175 Identities=13% Similarity=0.243 Sum_probs=106.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+-.+.|.++.|+|++..++++ .+.+.-.||=...+... ....+.+-++ --++.+..+|.+.++--+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~Gdli----------rtiPL~g~~D--pE~Ieyig~n~fvi~dER 148 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLI----------RTIPLTGFSD--PETIEYIGGNQFVIVDER 148 (316)
T ss_pred ccccccccceeeCCCcceEEEe-cCCCceEEEEecCCceE----------EEecccccCC--hhHeEEecCCEEEEEehh
Confidence 3455669999999955555544 45555555543333111 1123445555 257889888888888889
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
++.+.++.+............ .-++............++|.|.. ..|..
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~------------------------------~i~L~~~~k~N~GfEGlA~d~~~-~~l~~ 197 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQ------------------------------KIPLGTTNKKNKGFEGLAWDPVD-HRLFV 197 (316)
T ss_pred cceEEEEEEcCCccEEeccce------------------------------EEeccccCCCCcCceeeecCCCC-ceEEE
Confidence 999999988754221111110 00011111225567899999988 56666
Q ss_pred EcCCCeEEEEEccCCCccc-eeeeccC-------CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 297 VGDDSCLILWDARVGTSPV-IKVEKAH-------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~-~~~~~~~-------~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
+-+-.-+.||.+....... ......+ -..|..+.|++..+.+|+-+..++.+.-.|..-
T Consensus 198 aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 198 AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 7666777777665332111 1111111 245778899987888999999999988888774
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.59 Score=43.56 Aligned_cols=151 Identities=12% Similarity=0.113 Sum_probs=84.1
Q ss_pred ceeEEEEccCCCceEEEEc-----C-----CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE-cCCCcE
Q 010997 280 TVEDVTFCPSSAQEFCSVG-----D-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSV 348 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~-----~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~dg~i 348 (496)
..+++...|+|.-++-+.+ . -|.|..+|. .+. .......+-..-+.|+||| ++..|..+ +..+.|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~--~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i 187 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG--VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRI 187 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC--EEEeecCcEEecCceEECC-CCCEEEEEeCCCCeE
Confidence 4567777888732222222 1 133444443 333 3444445556678999999 77655555 445888
Q ss_pred EEEeCCCCCCCCCC-CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC-cEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997 349 RMFDRRNLTSNGVG-SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (496)
Q Consensus 349 ~iwd~~~~~~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (496)
.-|++......... .....+....+..-.++...+|. +.+++..+| .|.+|+... .++...
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG----------------~l~~~i 250 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDG----------------KLLGEI 250 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCC----------------cEEEEE
Confidence 88887631100001 11222333456666777777887 554444443 899998873 344444
Q ss_pred cCCCCCcceEEecC-CCCcEEEEecC
Q 010997 427 AGHRDKVVDFHWNA-SDPWTVVSVSD 451 (496)
Q Consensus 427 ~~h~~~V~~~~~~p-~~~~l~~s~s~ 451 (496)
.-....+++++|-- +...|+++.+.
T Consensus 251 ~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 251 KLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ECCCCCCccceEeCCCcCEEEEEecC
Confidence 44446678888853 34566665543
No 370
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.59 E-value=0.00085 Score=67.96 Aligned_cols=185 Identities=14% Similarity=0.220 Sum_probs=104.0
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC---CCCceEEe
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLSG 214 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p---~~~~l~sg 214 (496)
+.+|.|-.++|-.-+-..++ -.-|.+.|||+.--. |.-......+.....+..+.-+.|.| +.-++..+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~------G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~ 201 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQ------GEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG 201 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhc------cccccceEEeecCcCCCCcceeeecccccccceeeec
Confidence 67788888888552222222 344789999987531 11122333333333333445566665 34467777
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
-.+++|++..+++... ..+.+|...+.+++|-..| ...
T Consensus 202 ~~~~~i~lL~~~ra~~-----------------------------------------~l~rsHs~~~~d~a~~~~g-~~~ 239 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRALR-----------------------------------------SLFRSHSQRVTDMAFFAEG-VLK 239 (1283)
T ss_pred cCCCceeEeeechHHH-----------------------------------------HHHHhcCCCcccHHHHhhc-hhh
Confidence 7888998887764321 3455688888888876665 211
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA- 373 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~- 373 (496)
+.+ .+| ||..||.+..||.+++|-+.-... ....+++..+.|.+
T Consensus 240 l~~---------------------------------lSp-DGtv~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 240 LAS---------------------------------LSP-DGTVFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKH 284 (1283)
T ss_pred hee---------------------------------eCC-CCcEEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCC
Confidence 111 577 788888888888777775543211 01356666666663
Q ss_pred CEEEEEEcCCC---------CCEEEEEeCCCcEEEEECCCCCc
Q 010997 374 AVLCVQWSPDK---------SSVFGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 374 ~i~~l~~sp~~---------~~llas~~~dg~i~iwd~~~~~~ 407 (496)
+-.|.-++.+. .+++-+...+..+++|....+.+
T Consensus 285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 32222233221 11333333466788998776533
No 371
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.55 E-value=0.19 Score=44.11 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=78.0
Q ss_pred EEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 364 (496)
...++...+++.|+..+.+.--|..+++ ... ...-...|.+-+.- -+++++.|...|.+.+.+..+ +..
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~--~~W-e~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~t------Gs~ 85 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGN--LIW-EAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKT------GSQ 85 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCc--EEe-ehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecc------hhh
Confidence 3445556789999999999999999887 222 22334455554443 367799999999999999998 766
Q ss_pred ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
...+..-..-=.+....+++. ++..|+.|+..+.-|..+.
T Consensus 86 ~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 86 IWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred eeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEeccccc
Confidence 766654333223445566777 6679999999999998875
No 372
>PHA02713 hypothetical protein; Provisional
Probab=96.48 E-value=0.069 Score=54.60 Aligned_cols=93 Identities=10% Similarity=0.078 Sum_probs=51.1
Q ss_pred eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC------cEEEEeCCC-CCCCCCCCCceEeccCCCC
Q 010997 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRN-LTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg------~i~iwd~~~-~~~~~~~~~~~~~~~h~~~ 374 (496)
.+..||..+.+................+++ ++.+.+.|+.++ .+..||..+ .. +..+..+......
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~ 505 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA 505 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc
Confidence 577888887663222222111111112222 567777777642 467888876 33 4444455443333
Q ss_pred EEEEEEcCCCCCEEEEEeCCC--cEEEEECCC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDG--LLNIWDYEK 404 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg--~i~iwd~~~ 404 (496)
...+.+ ++ .|++.|+.|+ .+..||..+
T Consensus 506 ~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 506 LHTILH--DN-TIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence 333333 33 4889999888 666777665
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.47 E-value=0.01 Score=37.52 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=28.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE 171 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~ 171 (496)
....|.+++|+| ..++||.|+.+|.|.||.+.
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 445699999999 88899999999999999984
No 374
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.38 E-value=1.3 Score=44.81 Aligned_cols=74 Identities=9% Similarity=-0.098 Sum_probs=40.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcc-eeeeecCCCCceEEecCCCcEEEEecCCcccccc
Q 010997 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA 233 (496)
Q Consensus 155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v-~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~ 233 (496)
.+..++.++.|+-.|..++........... ........+ ..+... ++..++.++.+|.|.-+|.++++....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLP------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCC------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee
Confidence 455677788999999888743322110000 000000000 011111 225777888899999999998876655
Q ss_pred CC
Q 010997 234 TD 235 (496)
Q Consensus 234 ~~ 235 (496)
..
T Consensus 136 ~~ 137 (488)
T cd00216 136 FG 137 (488)
T ss_pred ec
Confidence 43
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.32 E-value=1.1 Score=44.21 Aligned_cols=205 Identities=11% Similarity=0.126 Sum_probs=107.1
Q ss_pred ceeeeecCCCCceEEe-cCCC----cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997 199 EFALAMCPTEPYVLSG-GKDK----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg-~~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (496)
+....++|+|++||-+ +..| .|++.|++++.... ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------------------------------------d~ 166 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------------------------------------DG 166 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------------------------------------EE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------------------------------------Cc
Confidence 3467889999987743 3333 59999998763210 11
Q ss_pred eecCCCceeEEEEccCCCceEEEEcCC----------CeEEEEEccCCCccceeeeccCCCC--eEEEEecCCCCcEEEE
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARVGTSPVIKVEKAHDAD--LHCVDWNPLDDNLILT 341 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~--v~~i~~sp~~~~~l~s 341 (496)
+.. .....+.|.+++..++.+...+ ..|..|.+.+........+...... ...+..++ ++.+|+.
T Consensus 167 i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i 243 (414)
T PF02897_consen 167 IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFI 243 (414)
T ss_dssp EEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEE
T ss_pred ccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEE
Confidence 111 1112389999985555665333 2377888776653323344333332 56888898 7777665
Q ss_pred EcCC----CcEEEEeCCCCCCCCCCCCceEeccCCCCEE-EEEEcCCCCCEEEEEeC---CCcEEEEECCCCCcccCCCC
Q 010997 342 GSAD----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGP 413 (496)
Q Consensus 342 gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~-~l~~sp~~~~llas~~~---dg~i~iwd~~~~~~~~~~~~ 413 (496)
.+.. ..+.+.|+.... .. ......+......+. .+... .+. +++.... .+.|.-.++.....
T Consensus 244 ~~~~~~~~s~v~~~d~~~~~-~~-~~~~~~l~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~------ 313 (414)
T PF02897_consen 244 SSSSGTSESEVYLLDLDDGG-SP-DAKPKLLSPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSP------ 313 (414)
T ss_dssp EEESSSSEEEEEEEECCCTT-TS-S-SEEEEEESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSG------
T ss_pred EEEccccCCeEEEEeccccC-CC-cCCcEEEeCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEeccccccc------
Confidence 3332 347888887620 00 123344443444443 34443 443 4433322 46677777776421
Q ss_pred CCCCCCCeeEEEecCCCC--CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 414 RTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
......+..|.. .+..+.. .+.+|++...++ ....|+++++.
T Consensus 314 ------~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~-----~~~~l~v~~~~ 357 (414)
T PF02897_consen 314 ------AEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYREN-----GSSRLRVYDLD 357 (414)
T ss_dssp ------GGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEET-----TEEEEEEEETT
T ss_pred ------ccceeEEcCCCCceeEEEEEE--ECCEEEEEEEEC-----CccEEEEEECC
Confidence 011113334444 3445544 466788877665 23578888887
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.08 Score=51.14 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=95.5
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC------CcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD------DNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 365 (496)
.+|.++..-..|+-.|+..++ ++....-+.. |+-+.+.|.. ...-+.|=.|..|.-||+|-.. ...+
T Consensus 347 lil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----~~kl 419 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----KNKL 419 (644)
T ss_pred eEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccC----ccee
Confidence 455666666778888999988 5665554544 7777787731 1223446678889999999532 1122
Q ss_pred eEeccC----CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 366 NKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 366 ~~~~~h----~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
..-++| .....|.+-..+|. +|.||.+|.|++||--.. . -...+.|-..+|..+..+.+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~--IvvgS~~GdIRLYdri~~-~--------------AKTAlPgLG~~I~hVdvtad 482 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGY--IVVGSLKGDIRLYDRIGR-R--------------AKTALPGLGDAIKHVDVTAD 482 (644)
T ss_pred eeeeccccccccccceeeecCCce--EEEeecCCcEEeehhhhh-h--------------hhhcccccCCceeeEEeecc
Confidence 222333 23456666666764 579999999999997321 1 11224667789999999999
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 442 DPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
|.+++++|- ..+.+-++.
T Consensus 483 GKwil~Tc~---------tyLlLi~t~ 500 (644)
T KOG2395|consen 483 GKWILATCK---------TYLLLIDTL 500 (644)
T ss_pred CcEEEEecc---------cEEEEEEEe
Confidence 999998875 566666654
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.26 E-value=0.011 Score=50.66 Aligned_cols=145 Identities=14% Similarity=0.177 Sum_probs=80.5
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
.+..-+.||.|+-++++..+..+ ....-+.....-+. -..-+++|+.+|.|.+|..... +.....+..-.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~-rse~~~~e~~~v~~----~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESC-RSERFIDEGQRVVT----ASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGE 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhh-hhhhhhhcceeecc----cCceEEeecccceEEEecCCcc-----chHHHhhhccc
Confidence 34555678888888887655211 11112222222222 3567899999999999988742 12222222222
Q ss_pred CCEEEEEEcCCCCC--EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC-CCcceEEecCCCCcEEEEe
Q 010997 373 AAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 373 ~~i~~l~~sp~~~~--llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~p~~~~l~~s~ 449 (496)
..|.++- |.++. +..+++.||.|+.|++... ..+.....|. .++..+..+..+..+. ++
T Consensus 102 e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~---------------k~~g~~g~h~~~~~e~~ivv~sd~~i~-~a 163 (238)
T KOG2444|consen 102 ESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPN---------------KVLGYVGQHNFESGEELIVVGSDEFLK-IA 163 (238)
T ss_pred ccceecc--ccccccceeEEeccCCceeeeccccC---------------ceeeeeccccCCCcceeEEecCCceEE-ee
Confidence 3333322 33332 6778999999999998764 3333344455 3444444444444333 22
Q ss_pred cCCCCCCCCCCeEEEeecCCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
-.|.|..++.|++...
T Consensus 164 -----~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 164 -----DTSHDRVLKKWNVEKI 179 (238)
T ss_pred -----ccccchhhhhcchhhh
Confidence 1145578888888743
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.02 Score=59.76 Aligned_cols=101 Identities=20% Similarity=0.321 Sum_probs=74.8
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
..++.|+..|.+...|++..-.+ ...-..-..+|++++|+. ++..++.|-.+|.|.+||+.. +..++.+..|
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~------~k~l~~i~e~ 171 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR------AKILKVITEH 171 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC------Ccceeeeeec
Confidence 46888999999999998764332 222334568999999999 999999999999999999998 7788888777
Q ss_pred CCCEEEEEE---cCCCCCEEEEEeCCCcEEEEECC
Q 010997 372 SAAVLCVQW---SPDKSSVFGSSAEDGLLNIWDYE 403 (496)
Q Consensus 372 ~~~i~~l~~---sp~~~~llas~~~dg~i~iwd~~ 403 (496)
..+.+.+-+ ..++. .+.++...|. +|.+.
T Consensus 172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 766555443 33444 4447766665 67654
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.19 E-value=0.23 Score=50.82 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=74.8
Q ss_pred CceeEEEEccCCCceEEEEc-----CCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC------
Q 010997 279 DTVEDVTFCPSSAQEFCSVG-----DDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------ 345 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d------ 345 (496)
..+.+.+++|++....++.. .|. .|.+++..... .....+ ....+-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA---VQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc---eeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence 45778899999954444441 244 45555542211 112222 2478889999 77777666432
Q ss_pred ------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC--CCcccCCCCCCCC
Q 010997 346 ------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTTN 417 (496)
Q Consensus 346 ------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~--~~~~~~~~~~~~~ 417 (496)
+.+.+.++.. +.... ...+.|..+.|||||.++++.. ++.|.+=-+.. .+. ...
T Consensus 424 ~~~~~~gql~~~~vd~------ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l------ 485 (591)
T PRK13616 424 IRDPATGQLARTPVDA------SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YAL------ 485 (591)
T ss_pred eccCCCceEEEEeccC------chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eee------
Confidence 2233333332 12111 2356799999999999865544 57777733322 111 000
Q ss_pred CCCeeEEEecCCCCCcceEEecCCCCc
Q 010997 418 YPAGLFFQHAGHRDKVVDFHWNASDPW 444 (496)
Q Consensus 418 ~~~~~~~~~~~h~~~V~~~~~~p~~~~ 444 (496)
..+..+ ..+-...+.++.|..++..
T Consensus 486 ~~~~~l--~~~l~~~~~~l~W~~~~~L 510 (591)
T PRK13616 486 TNPREV--GPGLGDTAVSLDWRTGDSL 510 (591)
T ss_pred cccEEe--ecccCCccccceEecCCEE
Confidence 000111 1223334688999997763
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.06 E-value=0.23 Score=50.81 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=54.2
Q ss_pred ceEEEEcCCC------eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc-----EEEEeCCCCCCCC
Q 010997 292 QEFCSVGDDS------CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-----VRMFDRRNLTSNG 360 (496)
Q Consensus 292 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~-----i~iwd~~~~~~~~ 360 (496)
.+.++||.++ ++..||..+...........-........+ ++.+.+.|+.|+. |..||..+..
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~--- 502 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ--- 502 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc---
Confidence 6778887554 578899888764322222211222222232 6788899988873 7778888743
Q ss_pred CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 010997 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL 396 (496)
Q Consensus 361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~ 396 (496)
+..+..+......+..+.+ +..+++.|+.||.
T Consensus 503 -W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 503 -WTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred -eeEcccCccccccccEEEE---CCEEEEEecccCc
Confidence 4444333333333333333 3447888987754
No 381
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.92 E-value=1.2 Score=40.44 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=67.4
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEE-ccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEc---CCCcEEEEeCC
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWD-ARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR 354 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs---~dg~i~iwd~~ 354 (496)
.+..-.|.+++ .+.+....+...+++. ...+........... ...|..+.++| ++..+|.-. .++.|.+=-+.
T Consensus 67 ~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 67 SLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence 56777899987 5566655566666663 333331112111111 12899999999 887766654 35677776554
Q ss_pred CCCCC---CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 010997 355 NLTSN---GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (496)
Q Consensus 355 ~~~~~---~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~i 399 (496)
..... ....++.........+..+.|.+++..++++...++.+..
T Consensus 145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 32221 0112233333345689999999999854444444554444
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.91 E-value=0.028 Score=35.60 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=28.8
Q ss_pred CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 322 ~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~ 354 (496)
....|.+++|+| ...+||.|+.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 446799999999 89999999999999999984
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.62 E-value=3.7 Score=43.39 Aligned_cols=164 Identities=9% Similarity=0.156 Sum_probs=85.0
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC--------------CcEEEEeCCCCCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD--------------NSVRMFDRRNLTS 358 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d--------------g~i~iwd~~~~~~ 358 (496)
.++++. .+.+++.-+..-+....++. .-......+++.+ ...++++.+.- ..++++|-.+.+
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~- 761 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE- 761 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeee-cCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCcee-
Confidence 355443 45677766654433233343 3345566777776 44444443321 136666666522
Q ss_pred CCCCCCceEeccC--CCCEEEEEEcCCCCCEEEEEeC----------CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997 359 NGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (496)
Q Consensus 359 ~~~~~~~~~~~~h--~~~i~~l~~sp~~~~llas~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (496)
-...+.+... ...|.++.|..+....++.|.. .|+|.||.+...++ .+++..+
T Consensus 762 ---vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------------L~~v~e~ 826 (1096)
T KOG1897|consen 762 ---VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------------LELVAET 826 (1096)
T ss_pred ---EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------------eeeeeee
Confidence 1111222211 1246666788874434555542 47788887766211 1222222
Q ss_pred cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEec
Q 010997 427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCT 493 (496)
Q Consensus 427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~ 493 (496)
. -.+.|.++.-- ...++|+-+ ..|++|+.. .+..++.-..|..++..+.
T Consensus 827 ~-v~Gav~aL~~f--ngkllA~In---------~~vrLye~t------~~~eLr~e~~~~~~~~aL~ 875 (1096)
T KOG1897|consen 827 V-VKGAVYALVEF--NGKLLAGIN---------QSVRLYEWT------TERELRIECNISNPIIALD 875 (1096)
T ss_pred e-eccceeehhhh--CCeEEEecC---------cEEEEEEcc------ccceehhhhcccCCeEEEE
Confidence 1 13445554432 334565544 689999998 4556666677777776654
No 384
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.55 E-value=0.3 Score=48.20 Aligned_cols=122 Identities=13% Similarity=0.253 Sum_probs=76.0
Q ss_pred cCCCceeEEEEccCC---CceEEEEcCCCeEEEEEccCCCc---cceeee-ccCCC----CeEEEEecCCCCcEEEEEcC
Q 010997 276 GHEDTVEDVTFCPSS---AQEFCSVGDDSCLILWDARVGTS---PVIKVE-KAHDA----DLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~~----~v~~i~~sp~~~~~l~sgs~ 344 (496)
+.-..|..+.|.|-+ .--+++......|.+|.+-.... ...... ..... --....|+| ....|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 334568999999863 12466667788999999863221 011111 11111 123568999 7777777666
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~ 403 (496)
...-.+++.+... .+....+ ...+-|.|.+|.+||.+|+++.+..=.-+|||-.
T Consensus 133 ~dvSV~~sV~~d~----srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDS----SRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCC----ceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 6555667777532 2223334 3567899999999999887766665567788754
No 385
>PHA02713 hypothetical protein; Provisional
Probab=95.38 E-value=0.39 Score=49.20 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=27.4
Q ss_pred ceEEEEcCCC-----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
.+++.||.++ .+..||..+..................++. ++.+.+.|+.+
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~ 408 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRT 408 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCC
Confidence 6777777654 488899887653221111111111222232 57777888765
No 386
>PHA03098 kelch-like protein; Provisional
Probab=95.38 E-value=1.4 Score=45.24 Aligned_cols=103 Identities=6% Similarity=0.085 Sum_probs=50.6
Q ss_pred ceEEEEcCC------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC--------cEEEEeCCCCC
Q 010997 292 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--------SVRMFDRRNLT 357 (496)
Q Consensus 292 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg--------~i~iwd~~~~~ 357 (496)
.+++.||.+ ..+..||..+.+.............. +++.. ++.+++.|+.++ .+.+||..+..
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 567777632 45889998876532221111111111 22222 466777776532 38888887632
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
+..+..+.........+.+ ++. |++.|+.+ +.|.+||..+
T Consensus 468 ----W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 468 ----WTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ----eeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence 2222222111111122222 444 67777754 3577787765
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.37 E-value=2 Score=41.39 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=73.9
Q ss_pred EEEccCCCceEEEEc------CCCeEEEEEccCCCccceeeecc---CCCCeEEEEecCCCCcEEEEEcC----------
Q 010997 284 VTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKVEKA---HDADLHCVDWNPLDDNLILTGSA---------- 344 (496)
Q Consensus 284 l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~i~~sp~~~~~l~sgs~---------- 344 (496)
+..-|+| .+++|+- .-|-+.++|-.+.+ +...... ...--..+-|.| ..+.++|...
T Consensus 135 ~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf 210 (461)
T PF05694_consen 135 VHCLPDG-RIMISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGF 210 (461)
T ss_dssp EEE-SS---EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT--
T ss_pred eeecCCc-cEEEEeccCCCCCCCCcEEEEcCcccc--ccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCC
Confidence 3444666 5666642 12457777766544 2222211 123346677788 6777777652
Q ss_pred ----------CCcEEEEeCCCCCCCCCCCCceEeccCC--CCEEEEEEc--CCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997 345 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKVGKKVE 410 (496)
Q Consensus 345 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~--~~i~~l~~s--p~~~~llas~~~dg~i~iwd~~~~~~~~~ 410 (496)
..++.+||+.+ .+.++++.--. ..+..|.|. |+..+=|+.+.-...|..|--...+.-..
T Consensus 211 ~~~d~~~~~yG~~l~vWD~~~------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a 284 (461)
T PF05694_consen 211 NPEDLEAGKYGHSLHVWDWST------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA 284 (461)
T ss_dssp -TTTHHHH-S--EEEEEETTT------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE
T ss_pred ChhHhhcccccCeEEEEECCC------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee
Confidence 35799999998 77787776432 235566665 44554454554454554443322122110
Q ss_pred CCCCCCCCCCe---------eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 411 QGPRTTNYPAG---------LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 411 ~~~~~~~~~~~---------~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
..... .|.. ++..+..-..-|+++..|.++++|.+|+=-+ |.|+.||+++.
T Consensus 285 ~kVi~--ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-------GdvrqYDISDP 344 (461)
T PF05694_consen 285 EKVID--IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-------GDVRQYDISDP 344 (461)
T ss_dssp EEEEE--E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-------TEEEEEE-SST
T ss_pred eEEEE--CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-------CcEEEEecCCC
Confidence 00000 0000 0000000123579999999999999976554 99999999975
No 388
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.34 E-value=0.059 Score=33.00 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.8
Q ss_pred CceeEEEecCCCC--cEEEEEeCCCcEEEEeCCCC
Q 010997 141 GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 141 ~~V~~l~~~p~~~--~~lat~~~dg~i~iwd~~~~ 173 (496)
|+|.+++|+|..+ ++||..-..|.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 5799999998666 79999989999999999854
No 389
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.34 E-value=3.2 Score=40.78 Aligned_cols=87 Identities=7% Similarity=0.121 Sum_probs=56.2
Q ss_pred EEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 364 (496)
.++.+. ...+....++.+.+.+-.... . . ...+++..|+.|| +++++|.-..+|.+.+....- .+.
T Consensus 185 ~l~~~~-~~~i~~~~g~~i~~i~~~~~~--~---i-~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf------~~~ 250 (410)
T PF04841_consen 185 LLSSDR-VVEILLANGETIYIIDENSFK--Q---I-DSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF------SEK 250 (410)
T ss_pred EeecCc-ceEEEEecCCEEEEEEccccc--c---c-cCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcc------cce
Confidence 344444 345555566677755533322 1 1 2346899999999 999999999999999987654 344
Q ss_pred ceEeccC-CCCEEEEEEcCCCC
Q 010997 365 INKFEGH-SAAVLCVQWSPDKS 385 (496)
Q Consensus 365 ~~~~~~h-~~~i~~l~~sp~~~ 385 (496)
+..+... ......+.|.-++.
T Consensus 251 ~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 251 LCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred eEEeecCcCCCCcEEEEECCCc
Confidence 5555433 34567888877654
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.32 E-value=1.5 Score=39.80 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=86.2
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe-CCCCCC
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNLTS 358 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd-~~~~~~ 358 (496)
.+.+.++++++..+.+....++.-.||-.+.+.. ..... ....+..-.|++ ++.+.+....+...+++. .....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~--~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~- 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVL--TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT- 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeec--cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc-
Confidence 6788999999954444442333333443333331 12222 233788889999 677777777677777764 22211
Q ss_pred CCCCCCceEeccC--CCCEEEEEEcCCCCCEEEEE--eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997 359 NGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 434 (496)
Q Consensus 359 ~~~~~~~~~~~~h--~~~i~~l~~sp~~~~llas~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 434 (496)
... ...... ...|..+.+||||..+.+.. ..++.|.|=-+....... .. .....+.........+.
T Consensus 100 ---~~~-~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~---~~---~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 100 ---GEP-VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV---PR---RLTGPRRVAPPLLSDVT 169 (253)
T ss_pred ---cee-EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCC---cc---eeccceEecccccCcce
Confidence 111 112211 12899999999999865444 235777777665432210 00 00011122223345789
Q ss_pred eEEecCCCCcEEEEec
Q 010997 435 DFHWNASDPWTVVSVS 450 (496)
Q Consensus 435 ~~~~~p~~~~l~~s~s 450 (496)
+++|.+++..+++...
T Consensus 170 ~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRS 185 (253)
T ss_pred eeeecCCCEEEEEeCC
Confidence 9999998775555433
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=2.1 Score=38.72 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=100.4
Q ss_pred ecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe
Q 010997 192 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 271 (496)
Q Consensus 192 ~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (496)
.|-+.+ +.++.|+|+.+.|++......-.||=-..+......
T Consensus 82 ~g~~~n-vS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti------------------------------------- 123 (316)
T COG3204 82 LGETAN-VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI------------------------------------- 123 (316)
T ss_pred cccccc-ccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-------------------------------------
Confidence 344443 889999999998888776666666644333221111
Q ss_pred eeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-----eeee--ccC-CCCeEEEEecCCCCcEEEEEc
Q 010997 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVE--KAH-DADLHCVDWNPLDDNLILTGS 343 (496)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~--~~~-~~~v~~i~~sp~~~~~l~sgs 343 (496)
.+.+ -.....+.+...+ .+.++--.++.+.++.+....... ...+ ..+ +...-.++|+| ....|..+-
T Consensus 124 -PL~g-~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aK 199 (316)
T COG3204 124 -PLTG-FSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAK 199 (316)
T ss_pred -cccc-cCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEE
Confidence 0111 1234456666665 566666677777777666543100 0011 122 66788999999 566666666
Q ss_pred CCCcEEEEeCCCCCCCCCCCCceEeccC-------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 344 ADNSVRMFDRRNLTSNGVGSPINKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.-.=+.||-.....+. -.++....+ -..|.++.|++....+|+-+.+++.+.-.|...
T Consensus 200 Er~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 200 ERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccCCcEEEEEecCCcc---cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 6666777766542110 111111111 235788999988777888888898888888775
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.28 E-value=0.77 Score=46.82 Aligned_cols=112 Identities=13% Similarity=0.214 Sum_probs=65.5
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEc--CCCCCEEEEEeCCCcEEEEECCCCCcccCCC
Q 010997 336 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412 (496)
Q Consensus 336 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~s--p~~~~llas~~~dg~i~iwd~~~~~~~~~~~ 412 (496)
+..-++-+....+.|||.+. +....+-. ...+.|..+.|. |+++.+||.| ....|.+|--.......
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~------~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy~~--- 110 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRS------GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDYTN--- 110 (631)
T ss_pred CcEEEEECCCCEEEEEEcCC------cEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhhhc---
Confidence 33333444455899999997 33222211 347789999986 6788777555 57788888653311110
Q ss_pred CCCCCCCCeeEEEecCCC-CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 413 PRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~h~-~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
......+........|+ .+|.+..|.++|..++++ + +.+.|++-.
T Consensus 111 -~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-G---------Nqlfv~dk~ 156 (631)
T PF12234_consen 111 -KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-G---------NQLFVFDKW 156 (631)
T ss_pred -CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-C---------CEEEEECCC
Confidence 00011112222234455 589999999987654433 2 789998754
No 393
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.27 E-value=2.8 Score=39.90 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=33.6
Q ss_pred EecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEe
Q 010997 147 RELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS 224 (496)
Q Consensus 147 ~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd 224 (496)
+|.++..++|.++..|| .+++-|+.++. ...|.........+..++|+++.|+-......|+--|
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~-------------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vd 108 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE-------------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVD 108 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE-------------EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEE
Confidence 34553345566665566 45666777662 1222222222345677788888766554456788888
Q ss_pred cCCcc
Q 010997 225 IQDHI 229 (496)
Q Consensus 225 ~~~~~ 229 (496)
+++.+
T Consensus 109 L~T~e 113 (386)
T PF14583_consen 109 LDTLE 113 (386)
T ss_dssp TTT--
T ss_pred CCcCc
Confidence 87654
No 394
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.04 E-value=3.5 Score=42.43 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=55.9
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEE---EEccCCCccc---eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLIL---WDARVGTSPV---IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~i---wd~~~~~~~~---~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw 351 (496)
.+.|..+.|+|+|..+.+.. +|.|.+ -....+...+ ......-...+..+.|.+ ++.+ +++..++...+|
T Consensus 447 ~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~ 522 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSL-VVGRSDPEHPVW 522 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec-CCEE-EEEecCCCCceE
Confidence 45799999999995444433 467776 3322232111 011112333468899998 6664 455555555555
Q ss_pred eCCCCCCCCCCCCceEecc--CCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997 352 DRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDG 395 (496)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~--h~~~i~~l~~sp~~~~llas~~~dg 395 (496)
-+.-- +.....+.. ...++..|+-++. . ++ ....++
T Consensus 523 ~v~vD-----G~~~~~~~~~n~~~~v~~vaa~~~-~-iy-v~~~~g 560 (591)
T PRK13616 523 YVNLD-----GSNSDALPSRNLSAPVVAVAASPS-T-VY-VTDARA 560 (591)
T ss_pred EEecC-----CccccccCCCCccCceEEEecCCc-e-EE-EEcCCc
Confidence 54431 111111122 3567778887763 3 55 344455
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.86 E-value=0.11 Score=31.91 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=27.8
Q ss_pred CceeEEEEccCCC--ceEEEEcCCCeEEEEEccCC
Q 010997 279 DTVEDVTFCPSSA--QEFCSVGDDSCLILWDARVG 311 (496)
Q Consensus 279 ~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~ 311 (496)
+.|.++.|+|... .+|+..-.-|.|.|+|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3688999998764 68888889999999999953
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.73 E-value=3.1 Score=37.50 Aligned_cols=213 Identities=13% Similarity=0.184 Sum_probs=114.6
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCc-EEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPD-VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
....-+..-..++|+|..+.-++.+-.-|+ ..++|............ .....+-||. .|+|||.+|..
T Consensus 62 ~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s----~~~RHfyGHG-------vfs~dG~~LYA 130 (366)
T COG3490 62 FATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS----QEGRHFYGHG-------VFSPDGRLLYA 130 (366)
T ss_pred eeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec----ccCceeeccc-------ccCCCCcEEEe
Confidence 334445555678888877777777766664 67889887632211110 1122344442 48999998887
Q ss_pred ecC-----CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 214 GGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 214 g~~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
.-. -|.|-|||.+.+- ..+..+..|.-..-.+.|.+
T Consensus 131 TEndfd~~rGViGvYd~r~~f---------------------------------------qrvgE~~t~GiGpHev~lm~ 171 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREGF---------------------------------------QRVGEFSTHGIGPHEVTLMA 171 (366)
T ss_pred ecCCCCCCCceEEEEeccccc---------------------------------------ceecccccCCcCcceeEEec
Confidence 543 3788999987432 11234555666667788999
Q ss_pred CCCceEEEEcC------------------CCeEEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997 289 SSAQEFCSVGD------------------DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSV 348 (496)
Q Consensus 289 ~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~dg~i 348 (496)
||. .++.+.. .-++.+.|..++......++. .+.-.|..++..+ ++..++.+-..|--
T Consensus 172 DGr-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~ 249 (366)
T COG3490 172 DGR-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPR 249 (366)
T ss_pred CCc-EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCC
Confidence 984 4444321 112233333333311111111 2334566666666 55544433222210
Q ss_pred ----EEE-eCCCCCCCCCCCCceEec-------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 349 ----RMF-DRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 349 ----~iw-d~~~~~~~~~~~~~~~~~-------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
-+. -.+. ++++.-+. .....|-+|+.+-+...+.+|+=..+...+||..++
T Consensus 250 ~d~ppLvg~~~~------g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 250 NDLPPLVGHFRK------GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred ccCCcceeeccC------CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 000 0011 23333222 123567788888777766666666778889999985
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.64 E-value=3.1 Score=38.63 Aligned_cols=115 Identities=14% Similarity=0.287 Sum_probs=59.3
Q ss_pred ecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 275 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~ 354 (496)
..-.+.+.++.-++++ .+++++.....+.-||--... -..........|.+|.|+| ++.+.+++ ..|.|++=+..
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-T
T ss_pred cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCC
Confidence 3445678888889998 677777776666788754433 1222234568899999999 77776655 88888887722
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLL 397 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i 397 (496)
..... -.+++..+..-...+..++|.+++. ++|+|+ .|.+
T Consensus 216 ~~~~~-w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l 255 (302)
T PF14870_consen 216 DDGET-WSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL 255 (302)
T ss_dssp TEEEE-E---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E
T ss_pred CCccc-cccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE
Confidence 10000 0011111222334589999999877 776666 5544
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.56 E-value=0.067 Score=54.93 Aligned_cols=125 Identities=22% Similarity=0.317 Sum_probs=80.4
Q ss_pred eeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc-----cceeeeccCCCCeEEEEecCC--CCcEEEEEcCC
Q 010997 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPL--DDNLILTGSAD 345 (496)
Q Consensus 273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~d 345 (496)
.+++..+.|-+++|.....-.+. -.-|.+.+||+..-+. ..++....-...+.-|.|.|. +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 45677788888888432211122 3447789998864321 112223334456677777764 45677788888
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEE-----------EcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ-----------WSPDKSSVFGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~-----------~sp~~~~llas~~~dg~i~iwd~~~~~~ 407 (496)
+.|++..+.. .....+.+|...++.++ .||||. +||.++.||.+++|.+.-.++
T Consensus 205 ~~i~lL~~~r-------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 205 GEIRLLNINR-------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred CceeEeeech-------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence 9999888775 22344556766555543 589998 678999999999998866544
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.53 E-value=2.2 Score=39.68 Aligned_cols=157 Identities=12% Similarity=0.146 Sum_probs=74.9
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
.-.+.++.+..++ ++.++|+++.-....-||-... .-..........|..|.|.|++.+.+.+ +.
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~-------------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQT-------------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-S-------------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCc-------------cceEEccCccceehhceecCCCCEEEEe-CC
Confidence 3447788888888 8888888766545567775432 0111122223368999999998765544 78
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|.|+.=+.......... ++..+....-.+.+++|.+++ ..+++|
T Consensus 207 g~~~~s~~~~~~~~w~~-----------------------------------~~~~~~~~~~~~ld~a~~~~~-~~wa~g 250 (302)
T PF14870_consen 207 GQIQFSDDPDDGETWSE-----------------------------------PIIPIKTNGYGILDLAYRPPN-EIWAVG 250 (302)
T ss_dssp TEEEEEE-TTEEEEE--------------------------------------B-TTSS--S-EEEEEESSSS--EEEEE
T ss_pred cEEEEccCCCCcccccc-----------------------------------ccCCcccCceeeEEEEecCCC-CEEEEe
Confidence 88888772211110000 000011122357899999886 566655
Q ss_pred cCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw 351 (496)
+. |.+. .....++ .-... ..-...++.|.|.+ ...-++.| .+|.|.-|
T Consensus 251 g~-G~l~-~S~DgGk--tW~~~~~~~~~~~n~~~i~f~~-~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 251 GS-GTLL-VSTDGGK--TWQKDRVGENVPSNLYRIVFVN-PDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp ST-T-EE-EESSTTS--S-EE-GGGTTSSS---EEEEEE-TTEEEEE--STTEEEEE
T ss_pred CC-ccEE-EeCCCCc--cceECccccCCCCceEEEEEcC-CCceEEEC-CCcEEEEe
Confidence 54 4333 3444444 12211 12345688899976 55666665 67766544
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=0.51 Score=50.16 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=90.4
Q ss_pred ceeEEEEccCCCc-eEEEEcCCCeEEEEEccCCCccc---eeee------ccCCCCeEEEEecCCCCcEEEEEcCCCcEE
Q 010997 280 TVEDVTFCPSSAQ-EFCSVGDDSCLILWDARVGTSPV---IKVE------KAHDADLHCVDWNPLDDNLILTGSADNSVR 349 (496)
Q Consensus 280 ~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~---~~~~------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~ 349 (496)
++..+...+++.. .++..+.+-.|..||++.-.... ...+ .....-..++.|+|.=....|....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555556666421 23334455578999998643111 1111 112334568899995556678888899999
Q ss_pred EEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (496)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 429 (496)
+.-+.... ..+.++. .....++++|+|.|..+ +.|-..|.+.-|...-.-+... ..|+ .. -
T Consensus 182 V~~~~~~~-----~~v~s~p-~t~~~Tav~WSprGKQl-~iG~nnGt~vQy~P~leik~~i------p~Pp--~~----e 242 (1405)
T KOG3630|consen 182 VKSTKQLA-----QNVTSFP-VTNSQTAVLWSPRGKQL-FIGRNNGTEVQYEPSLEIKSEI------PEPP--VE----E 242 (1405)
T ss_pred hhhhhhhh-----hhhcccC-cccceeeEEecccccee-eEecCCCeEEEeecccceeecc------cCCC--cC----C
Confidence 98777532 2233332 45678999999999975 5888899998887554211000 0111 10 1
Q ss_pred CCCcceEEecCCCCcEEEE
Q 010997 430 RDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 430 ~~~V~~~~~~p~~~~l~~s 448 (496)
...|.+|+|-....++++-
T Consensus 243 ~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 243 NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred CcceeEEEEecceeEEEEe
Confidence 3578999998776665543
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.47 E-value=0.95 Score=46.19 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=74.7
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCC-
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNL- 356 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~- 356 (496)
..+.-+.-+.-+ ...+.-+....+.|||.+.+.......+ ...+.|..+.|... +++.+++.+-...|.+|--...
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344445555544 3444444556899999988762222222 45788999999531 6777777778888888854211
Q ss_pred --CCCCCCCCceEe--ccCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 357 --TSNGVGSPINKF--EGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 357 --~~~~~~~~~~~~--~~h~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
...+...++..+ ..|+ .+|.+..|.++|. ++ .|+ ++.+.|+|-.-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKWL 157 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCCc
Confidence 112223444444 3444 6899999999997 33 443 45788887543
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.14 E-value=3.6 Score=35.92 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=80.8
Q ss_pred CCCeEEEEecCCCCcEEEEEcCC---------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC
Q 010997 323 DADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 393 (496)
Q Consensus 323 ~~~v~~i~~sp~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~ 393 (496)
....+.-..+| ++++++---.| |.++.|-.. ..+..+...-.--+.++|+.+...+...-+.
T Consensus 108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~--------h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG--------HQVELIWNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC--------CCceeeehhccCCccccccccCcEEEEEccC
Confidence 34566677789 88884432222 223333221 1222222222334678999888877777788
Q ss_pred CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC---CC-CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH---RD-KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 394 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~-~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+-.|.-||..-..-.. ..+..++.+... .. .--.++...+|...+++-+ .++|...|+.
T Consensus 179 n~~V~a~dyd~~tG~~--------snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n--------g~~V~~~dp~- 241 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDL--------SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN--------GGTVQKVDPT- 241 (310)
T ss_pred ceEEeeeecCCCcccc--------cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec--------CcEEEEECCC-
Confidence 8888888844321111 112333333321 11 1223444555554444333 2789999998
Q ss_pred CCcCCchHHHHHHHhccceEEEecc
Q 010997 470 LIYRPQDEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 470 ~~~~~~~~~~~~l~~h~~~v~~~~~ 494 (496)
+++.+.++.-....|++++|
T Consensus 242 -----tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 242 -----TGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred -----CCcEEEEEEcCCCceEEEEe
Confidence 89999999988999999998
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.11 E-value=5.3 Score=42.05 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=57.2
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC--CCccccCCCCCCCCce------EEecCCCCcceeee
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ--PNRHAVLGATNSRPDL------ILTGHQDNAEFALA 203 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~------~l~~h~~~~v~~l~ 203 (496)
+......-.-+|..|..+| ++.+||..|..| |.|-.+... .......+.....+.. .+..+....|..+.
T Consensus 76 ~L~~~~~~~f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~ 153 (717)
T PF10168_consen 76 KLLPSNPPLFEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR 153 (717)
T ss_pred eeecCCCCceeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE
Confidence 3333344456899999999 889999888865 444444321 1110001111111110 12223333688999
Q ss_pred ecCC---CCceEEecCCCcEEEEecCCc
Q 010997 204 MCPT---EPYVLSGGKDKSVVLWSIQDH 228 (496)
Q Consensus 204 ~~p~---~~~l~sg~~Dg~i~iwd~~~~ 228 (496)
|+|. +..|+.=..|+++|+||+...
T Consensus 154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 154 WHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 9997 468888888999999999754
No 404
>PRK10115 protease 2; Provisional
Probab=93.99 E-value=9.7 Score=40.27 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=40.0
Q ss_pred eEEEEccCCCceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---CCcEEEEeC
Q 010997 282 EDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDR 353 (496)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---dg~i~iwd~ 353 (496)
..++|.+++..++++...+ ..|..+++.++.......+........-..+.+.++.+++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 4589999985555554432 36777888777322233333333333322232325555544433 357889986
Q ss_pred CC
Q 010997 354 RN 355 (496)
Q Consensus 354 ~~ 355 (496)
..
T Consensus 255 ~~ 256 (686)
T PRK10115 255 EL 256 (686)
T ss_pred cC
Confidence 44
No 405
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.89 E-value=2.2 Score=44.19 Aligned_cols=175 Identities=11% Similarity=0.096 Sum_probs=96.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccc------cCCC--CCCCCceEE----ecCCCCcceeeeecC--CCCceEEecCCC
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHA------VLGA--TNSRPDLIL----TGHQDNAEFALAMCP--TEPYVLSGGKDK 218 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~------~~~~--~~~~~~~~l----~~h~~~~v~~l~~~p--~~~~l~sg~~Dg 218 (496)
.++++.+. .+.|.||++........ .... ......... ..|+ |+-|.... ....|+.|..||
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHt---IN~i~v~~lg~~EVLl~c~DdG 124 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHT---INFIKVGDLGGEEVLLLCTDDG 124 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCce---eeEEEecccCCeeEEEEEecCC
Confidence 45666655 56999999876543211 0000 000000000 1222 44444332 344788999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc--cCCCceEEE
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC--PSSAQEFCS 296 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~~l~s 296 (496)
.|.+|.+++-........... ... .......|...+. -...+++++++ ... +++|+
T Consensus 125 ~V~~Yyt~~I~~~i~~~~~~~----------------~~~----~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlIAV 182 (717)
T PF08728_consen 125 DVLAYYTETIIEAIERFSEDN----------------DSG----FSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLIAV 182 (717)
T ss_pred eEEEEEHHHHHHHHHhhcccc----------------ccc----cccccCCCCeEee-cCCceeEEEEEecCcc-eEEEE
Confidence 999998764211100000000 000 0001223333333 23478999998 665 78888
Q ss_pred EcCCCeEEEEEccCCCcc-ceeeeccCCCCeEEEEecCCC--Cc---EEEEEcCCCcEEEEeC
Q 010997 297 VGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLD--DN---LILTGSADNSVRMFDR 353 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~i~~sp~~--~~---~l~sgs~dg~i~iwd~ 353 (496)
++....|.||-....... .......+..-|.+|+|-+.+ +. .|++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888866553211 111122466789999997732 22 7888999999999888
No 406
>PHA02790 Kelch-like protein; Provisional
Probab=93.83 E-value=2.4 Score=42.68 Aligned_cols=100 Identities=7% Similarity=-0.038 Sum_probs=50.0
Q ss_pred ceEEEEcCCC---eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 292 QEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 292 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
.+.+.||.++ .+..||.++..................+++ ++.+.+.|+ .+.+||..+.. +..+..+
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~----W~~~~~m 433 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNT----WTLIDDP 433 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCc----EeEcCCC
Confidence 6777777553 477888877653221111111111122232 566777774 57788887632 3333333
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
.........+.+ ++. |++.||.+ ..|..||..+
T Consensus 434 ~~~r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 434 IYPRDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCC
Confidence 222222222222 344 78888754 3466666654
No 407
>PHA03098 kelch-like protein; Provisional
Probab=93.52 E-value=2.9 Score=42.79 Aligned_cols=103 Identities=10% Similarity=0.050 Sum_probs=50.4
Q ss_pred ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC------CcEEEEeCCCCCCCC
Q 010997 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTSNG 360 (496)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d------g~i~iwd~~~~~~~~ 360 (496)
.+++.||.+ ..+..||..+.+........ +...-.+++.. ++.+++.|+.+ ..+..||+.+..
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--- 417 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK--- 417 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe---
Confidence 677777765 35778888776532211111 11111122222 56777777742 357888987632
Q ss_pred CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--------cEEEEECCC
Q 010997 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------LLNIWDYEK 404 (496)
Q Consensus 361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--------~i~iwd~~~ 404 (496)
+..+..+....... +++. -++ .|++.||.++ .+.+||..+
T Consensus 418 -W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 418 -WSKGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred -eeecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCC
Confidence 22222221111111 1222 233 3677776532 277888765
No 408
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.40 E-value=6.3 Score=36.19 Aligned_cols=117 Identities=5% Similarity=0.061 Sum_probs=68.6
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee------------eeccCCCCeEEEE-ecCCCCcEEEEEcCCC
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK------------VEKAHDADLHCVD-WNPLDDNLILTGSADN 346 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~~v~~i~-~sp~~~~~l~sgs~dg 346 (496)
.|..+...++- +.+++-+ |+.+.++++..-...... ........+..++ -....+...+......
T Consensus 37 ~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 37 SITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred eEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 49999998877 4454444 499999999765422110 0112234455555 1122344444444555
Q ss_pred cEEEEeCCCCCCCCCC-CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 347 SVRMFDRRNLTSNGVG-SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.|.+|........ . ..+.++. -...+.+++|.++ .++.|. .+...+.|+.+.
T Consensus 115 ~i~i~~~~~~~~~--f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~ 167 (275)
T PF00780_consen 115 KILIYEWNDPRNS--FSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTG 167 (275)
T ss_pred EEEEEEEECCccc--ccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCC
Confidence 8999988763110 2 3455554 3577899999844 344565 445888999863
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=1.1 Score=40.26 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=68.6
Q ss_pred eeEEEEccCCCceEEEEcCCCe-EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCC
Q 010997 281 VEDVTFCPSSAQEFCSVGDDSC-LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRR 354 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~ 354 (496)
.-+|.|+|..+.-++.+-.-|+ ..++|....+.+..........-.-.=.||| ++.+|...-.| |.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 3456777776555555555554 5678888777544333222222222346899 88888765443 789999999
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEE
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~ll 388 (496)
.. ...+-++..|.-....+.|.+||+.++
T Consensus 149 ~~-----fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 149 EG-----FQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred cc-----cceecccccCCcCcceeEEecCCcEEE
Confidence 62 366778888888889999999999644
No 410
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.91 E-value=0.017 Score=55.13 Aligned_cols=143 Identities=8% Similarity=0.096 Sum_probs=98.9
Q ss_pred eeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCc
Q 010997 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 280 (496)
Q Consensus 201 ~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (496)
...|.|.+.-++.++.+..|..||-...... -....+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~l------------------------------------------e~n~tg~ 76 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVIL------------------------------------------ELNPTGK 76 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceec------------------------------------------ccCCchh
Confidence 5678887776888888888888885432110 0012345
Q ss_pred eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
..+++|..+++..++.+-..+.+.+||+.+.....+.. +....-.-+.|++ ....++.|...|.+.|++.+.
T Consensus 77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~--gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgt----- 148 (615)
T KOG2247|consen 77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES--GGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGT----- 148 (615)
T ss_pred HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc--cCcchHHHHhhcc-CCccccccccccceEEEeccc-----
Confidence 66788888887777888889999999998765221211 2222222278998 788889999999999999887
Q ss_pred CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 010997 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL 396 (496)
Q Consensus 361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~ 396 (496)
.+.+.....|...+++++|.+.+.. +.++.|..
T Consensus 149 -sR~iiv~Gkh~RRgtq~av~lEd~v--il~dcd~~ 181 (615)
T KOG2247|consen 149 -SRRIIVMGKHQRRGTQIAVTLEDYV--ILCDCDNT 181 (615)
T ss_pred -hhhhhhhcccccceeEEEeccccee--eecCcHHH
Confidence 4455555558899999999998763 34554433
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.88 E-value=14 Score=38.93 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=30.8
Q ss_pred cCCCceeEEEEccCC--CceEEEEcCCCeEEEEEccCCCc
Q 010997 276 GHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDARVGTS 313 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 313 (496)
.+...|..+.|||.+ +..|+.-..|+++++||+.....
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 345689999999974 36788888999999999986553
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.87 E-value=2 Score=42.72 Aligned_cols=129 Identities=12% Similarity=0.127 Sum_probs=74.5
Q ss_pred EEecCCCceeEEEecCC----CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC----cceeeeecC
Q 010997 135 KTIIHPGEVNRIRELPQ----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN----AEFALAMCP 206 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~----~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~----~v~~l~~~p 206 (496)
+.++.-..|..+.|.|. .+.+||.-. ...|.||.+....... .+....-..+-.. --.++.|+|
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~-------~K~l~sQtcEi~e~~pvLpQGCVWHP 122 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTER-------NKLLMSQTCEIREPFPVLPQGCVWHP 122 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEec-cceEEEEEeccCcccc-------ccceeeeeeeccCCcccCCCcccccC
Confidence 34555666999999983 345666654 5699999987442111 1222211111111 113567999
Q ss_pred CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
....|+.-.....-.+.++...... +..--...+.|.|.+|
T Consensus 123 k~~iL~VLT~~dvSV~~sV~~d~sr---------------------------------------VkaDi~~~G~IhCACW 163 (671)
T PF15390_consen 123 KKAILTVLTARDVSVLPSVHCDSSR---------------------------------------VKADIKTSGLIHCACW 163 (671)
T ss_pred CCceEEEEecCceeEeeeeeeCCce---------------------------------------EEEeccCCceEEEEEe
Confidence 9887665544433345555432111 1111134578999999
Q ss_pred ccCCCceEEEEcCCCeEEEEEccC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARV 310 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~ 310 (496)
.+||.+++++.+..=.-++||-..
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCch
Confidence 999976666666655667888543
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.54 E-value=5.4 Score=38.56 Aligned_cols=109 Identities=11% Similarity=0.157 Sum_probs=57.4
Q ss_pred CceeEEEEccCCCceEEEEc-----------CCC-eEEEEEccCCC--ccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997 279 DTVEDVTFCPSSAQEFCSVG-----------DDS-CLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~~--~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
.....|+|.++| +++++-. ..+ .|.+++-..+. ......+.......+.+++.+ ++ +++ ++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCC
Confidence 456788999998 5655542 223 77777654332 112233333344568899988 66 444 444
Q ss_pred CCcEEEEeCCCCCCCC-CCCCc-eEecc----CCCCEEEEEEcCCCCCEEEEEe
Q 010997 345 DNSVRMFDRRNLTSNG-VGSPI-NKFEG----HSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~-~~~~~-~~~~~----h~~~i~~l~~sp~~~~llas~~ 392 (496)
....++.|........ ..+.+ ..+.. +......++|.|+|. |+++-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 4433444543211000 01111 22322 234577999999997 555444
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.38 E-value=6.6 Score=37.94 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=52.9
Q ss_pred eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC-----Cccce-eeecc----CCCCeEEEEecCCCCcEEEEEc
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVI-KVEKA----HDADLHCVDWNPLDDNLILTGS 343 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~-~~~~~----~~~~v~~i~~sp~~~~~l~sgs 343 (496)
+.........+++.+++ ++++ +.....++.|.... +...+ ..+.. +....+.++|.| ++.+.++-+
T Consensus 67 fa~~l~~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G 142 (367)
T TIGR02604 67 FAEELSMVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG 142 (367)
T ss_pred eecCCCCccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence 33334456788888876 4444 34433334454321 11111 11211 234578899999 777655544
Q ss_pred CC-------------------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997 344 AD-------------------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 344 ~d-------------------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~ 392 (496)
.. |.|.-+|... ..+..+...-.....++|+|+|. ++++-.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg-------~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDG-------GKLRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred cCCCceeccCCCccCcccccCceEEEEecCC-------CeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence 21 2333344332 12222221122346899999987 564443
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.35 E-value=2.9 Score=43.31 Aligned_cols=128 Identities=12% Similarity=0.131 Sum_probs=80.7
Q ss_pred ceeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCc--------cccCCCCCCCCceEEecCCCCcceeeeec--CCCCc
Q 010997 142 EVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQPNR--------HAVLGATNSRPDLILTGHQDNAEFALAMC--PTEPY 210 (496)
Q Consensus 142 ~V~~l~~~p-~~~~~lat~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~l~~h~~~~v~~l~~~--p~~~~ 210 (496)
.|+.|.... .+..+|+.|.+||.|.+|.++.-... .........+|...+.-.. ..++|+++ ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~--SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA--SAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCC--ceeEEEEEecCcceE
Confidence 466666544 36679999999999999976432100 0000001234555555444 46999998 77788
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
||.++....|.||-.......... ..-..|...|.+|+|.++.
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~-------------------------------------~~s~~~~hNIP~VSFl~~~ 222 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYH-------------------------------------VPSHQHSHNIPNVSFLDDD 222 (717)
T ss_pred EEEecCCceEEEEEEecccccccc-------------------------------------ccccccccCCCeeEeecCC
Confidence 998888888999876532100000 0001256678899997654
Q ss_pred --Cc---eEEEEcCCCeEEEEEc
Q 010997 291 --AQ---EFCSVGDDSCLILWDA 308 (496)
Q Consensus 291 --~~---~l~s~~~dg~i~iwd~ 308 (496)
+. .+++++-.|.+.+|++
T Consensus 223 ~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 223 LDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CCCccceEEEEEeccCcEEEEEE
Confidence 22 6778889999999888
No 416
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=9.7 Score=34.65 Aligned_cols=141 Identities=16% Similarity=0.057 Sum_probs=90.9
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
.+-+.++.++. .+...+..+.-++|.|+.+...|....+..-.+--.++.. .+++...+..|.-+.+.|+..++
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC
Confidence 45577888874 4566666778899999999987766554444444555555 57888888877778899999865
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 437 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 437 (496)
+ ......+......-..++.|-+- -+ .+..|+-+.|-|+... ..+.++. +......+.++.
T Consensus 160 s---P~lagrya~~~~d~~~v~ISGn~--AY-vA~~d~GL~ivDVSnp------------~sPvli~-~~n~g~g~~sv~ 220 (370)
T COG5276 160 S---PQLAGRYALPGGDTHDVAISGNY--AY-VAWRDGGLTIVDVSNP------------HSPVLIG-SYNTGPGTYSVS 220 (370)
T ss_pred C---ceeeeeeccCCCCceeEEEecCe--EE-EEEeCCCeEEEEccCC------------CCCeEEE-EEecCCceEEEE
Confidence 3 23333444444445677777553 33 4556888999999885 2223332 222333677777
Q ss_pred ecCCCC
Q 010997 438 WNASDP 443 (496)
Q Consensus 438 ~~p~~~ 443 (496)
.+++.-
T Consensus 221 vsdnr~ 226 (370)
T COG5276 221 VSDNRA 226 (370)
T ss_pred ecCCee
Confidence 776443
No 417
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.53 E-value=12 Score=35.08 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=60.2
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeecc----------CCCCeEEEEecCCCCcEEEEEc--CC-----C--cEEEEeC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGS--AD-----N--SVRMFDR 353 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~i~~sp~~~~~l~sgs--~d-----g--~i~iwd~ 353 (496)
.++-.+.+|.|+--|+............. ..+.-.-+++++..+.+++... .+ + .|-++|+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 34445666777777766554111111110 0123345677763444443322 12 1 4777788
Q ss_pred CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEE-EEeCCCcEEEEECCCC
Q 010997 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG-SSAEDGLLNIWDYEKV 405 (496)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~lla-s~~~dg~i~iwd~~~~ 405 (496)
.+ ++.+..+.. ..++.+|+.+.+..-+|. ....++.+.+||..++
T Consensus 277 ~t------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 277 KT------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp TT------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred CC------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 87 778887763 346779999988765554 4456899999999985
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.28 E-value=3.9 Score=39.97 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=78.4
Q ss_pred CCCCCcCCeeeeecCCCceeEEEEccCCC------ceEEEEcCCCeEEEEEccCCCccceee-e--ccCCCCeEEEEecC
Q 010997 263 ADGPSVGPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIKV-E--KAHDADLHCVDWNP 333 (496)
Q Consensus 263 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~-~--~~~~~~v~~i~~sp 333 (496)
.+...++.+..+.-|... -+.|.|... ..-+.|-.+..|.-.|.|......... . ........|..-.
T Consensus 495 mDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT- 571 (776)
T COG5167 495 MDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT- 571 (776)
T ss_pred eecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccc-
Confidence 344445555555555543 466766531 112344455566666777544211111 0 0111223333322
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 334 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
...++|+|+..|-|++||.-. ...-..+.+....|..+..+.+|.++|||| ...+.+-|++-
T Consensus 572 -esGyIa~as~kGDirLyDRig------~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 572 -ESGYIAAASRKGDIRLYDRIG------KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred -cCceEEEecCCCceeeehhhc------chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 467999999999999999664 233344566778899999999999998777 46788888864
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.10 E-value=5.1 Score=35.03 Aligned_cols=107 Identities=9% Similarity=0.119 Sum_probs=70.7
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEE--ccCCCc---cceeeecc----CCCCeEEEEecCCCCcEEEEEcCCCcEE
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWD--ARVGTS---PVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVR 349 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~---~~~~~~~~----~~~~v~~i~~sp~~~~~l~sgs~dg~i~ 349 (496)
+--+.++|+.+...+.++-+.+-+|.-|| ..++.. ..+..++. ..-..-.++... ++++.++.-..|+|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEE
Confidence 33467889877766777778888887787 444331 01111111 011122344455 788888888889999
Q ss_pred EEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC-CCEEEEEe
Q 010997 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-SSVFGSSA 392 (496)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~llas~~ 392 (496)
.+|..+ ++.+.++.-....|++++|--.+ ..+++|+.
T Consensus 237 ~~dp~t------GK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 237 KVDPTT------GKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred EECCCC------CcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 999999 89999999889999999997542 32444444
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.85 E-value=17 Score=35.54 Aligned_cols=163 Identities=12% Similarity=0.115 Sum_probs=91.3
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC---C-CCceEEecCCCcEEEEec
Q 010997 150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---T-EPYVLSGGKDKSVVLWSI 225 (496)
Q Consensus 150 p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p---~-~~~l~sg~~Dg~i~iwd~ 225 (496)
+++...|+.|+..|.++||+....... .....++.....+|..+..-. . ....++.-.-+.+.||.+
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~---------~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v 104 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQ---------PEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSV 104 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCC---------CccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEE
Confidence 345678999999999999998554211 112344444455777776532 1 222223344566777776
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC--CceeEEEEccCC----CceEEEEcC
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE--DTVEDVTFCPSS----AQEFCSVGD 299 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~----~~~l~s~~~ 299 (496)
........ ....-.+..+..|. .....+++-|.| ..+++.=+.
T Consensus 105 ~~~~g~~~-------------------------------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~ 153 (418)
T PF14727_consen 105 SLVDGTVE-------------------------------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSM 153 (418)
T ss_pred EecCCCcc-------------------------------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEec
Confidence 32110000 00000112222222 233344444433 367888899
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
||.+.+|+-+... ....+ ..---.-.+++.+ .-+.|++++.+..|.-|....+
T Consensus 154 DG~L~~feqe~~~--f~~~l-p~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 154 DGSLSFFEQESFA--FSRFL-PDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDL 206 (418)
T ss_pred CceEEEEeCCcEE--EEEEc-CCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHh
Confidence 9999999976543 12222 2233334567888 7788999999999999976543
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=90.77 E-value=16 Score=36.77 Aligned_cols=100 Identities=4% Similarity=-0.068 Sum_probs=49.2
Q ss_pred ceEEEEcCC--CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCCce
Q 010997 292 QEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 292 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~ 366 (496)
.+.+.||.+ ..+..||..+.+......+.........++. ++.+.+.|+.++ .+..||.++.. +..+.
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~----W~~~~ 392 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ----WQFGP 392 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE----EEeCC
Confidence 677777754 3578888766542111111111111222222 577888887654 46778877522 22222
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.+.........+.+ ++. |++.|+ .+.+||..+
T Consensus 393 ~m~~~r~~~~~~~~--~~~-IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 393 STYYPHYKSCALVF--GRR-LFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCccccceEEEE--CCE-EEEECC---ceEEecCCC
Confidence 22111111122222 343 776764 467788765
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.27 E-value=7.3 Score=38.16 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=83.6
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-------CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-------DDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 365 (496)
++..|+.-..++-.|+.-++ ++.....|..- -+.|.|. ..+. ++|-++..|.-.|.|-. +..+
T Consensus 482 i~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqt-lvGlS~~svFrIDPR~~-----gNKi 551 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQT-LVGLSDYSVFRIDPRAR-----GNKI 551 (776)
T ss_pred EEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccce-EEeecccceEEeccccc-----CCce
Confidence 34455666677777777777 55555555443 5777773 1233 34555666666777752 2122
Q ss_pred eEeccCCCCE-----EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 366 NKFEGHSAAV-----LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 366 ~~~~~h~~~i-----~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
.... ....+ .+..-..+| .+|.|+.-|-|++||--... ....+.+-...|..+..+.
T Consensus 552 ~v~e-sKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~idvta 613 (776)
T COG5167 552 KVVE-SKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred eeee-ehhccccccccccccccCc--eEEEecCCCceeeehhhcch---------------hhhcCcccccceeeeEeec
Confidence 2111 12222 233333344 36799999999999954321 1112345567888999999
Q ss_pred CCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 441 SDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+|.+++|+|- +.|.+-|+.
T Consensus 614 ~Gk~ilaTCk---------~yllL~d~~ 632 (776)
T COG5167 614 NGKHILATCK---------NYLLLTDVP 632 (776)
T ss_pred CCcEEEEeec---------ceEEEEecc
Confidence 9999999886 567777765
No 423
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.59 E-value=4.2 Score=34.40 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=26.0
Q ss_pred CceeEEEEccCC-----CceEEEEcCCCeEEEEEccC
Q 010997 279 DTVEDVTFCPSS-----AQEFCSVGDDSCLILWDARV 310 (496)
Q Consensus 279 ~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 310 (496)
..|..++|+|.| ..+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 45789999999999997653
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=89.33 E-value=20 Score=34.07 Aligned_cols=156 Identities=10% Similarity=0.047 Sum_probs=80.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
.+.++++.+.| ++.+++++ ..|.+..= ...+. +.-..........++++.+.++++.++.| ..|.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s-~~~gg-----------~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~ 236 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYST-WEPGQ-----------TAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ 236 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEE-cCCCC-----------CeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE
Confidence 56788999988 66666555 44554431 11110 11112222333467899999988866655 4676
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
+++=..+.+..-.... .....-...+.++.+.+++ . ++.++.
T Consensus 237 ~~~~s~d~G~sW~~~~------------------------------------~~~~~~~~~l~~v~~~~~~-~-~~~~G~ 278 (334)
T PRK13684 237 IRFNDPDDLESWSKPI------------------------------------IPEITNGYGYLDLAYRTPG-E-IWAGGG 278 (334)
T ss_pred EEEccCCCCCcccccc------------------------------------CCccccccceeeEEEcCCC-C-EEEEcC
Confidence 6542222221100000 0000012346788888876 4 455556
Q ss_pred CCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997 300 DSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~ 353 (496)
+|.|.. ....++ ..... ..-....+.+.|.. ++..++ .+..|.|.-|+-
T Consensus 279 ~G~v~~-S~d~G~--tW~~~~~~~~~~~~~~~~~~~~-~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 279 NGTLLV-SKDGGK--TWEKDPVGEEVPSNFYKIVFLD-PEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCeEEE-eCCCCC--CCeECCcCCCCCcceEEEEEeC-CCceEE-ECCCceEEEecC
Confidence 776654 333333 11111 12224577788775 455555 557788877753
No 425
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.30 E-value=9.5 Score=36.83 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=91.1
Q ss_pred eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC----CeE-EEEecCCCCcEEEEEcCCCcE
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLH-CVDWNPLDDNLILTGSADNSV 348 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~-~i~~sp~~~~~l~sgs~dg~i 348 (496)
+..--..|..+-..|++ +.+..-+. ..+.++++.+......+......+ .|+ .+..-. .+.-+++++.||.|
T Consensus 216 L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLV 292 (733)
T ss_pred cCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCce
Confidence 44445677788889999 44444433 678888887655222211111111 121 111122 56778889999988
Q ss_pred EEE-eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997 349 RMF-DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (496)
Q Consensus 349 ~iw-d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (496)
.-| |.+...+ .....++.++-...++.-+.-. +.+..|++-+..|.+.++..... ..+++...
T Consensus 293 sQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~--------------~~lL~~~~ 356 (733)
T COG4590 293 SQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSE--------------KLLLFERA 356 (733)
T ss_pred eeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccC--------------cceehhhh
Confidence 766 6665321 1112222233222334333222 22335667777888877765441 12222221
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
...+.-++++|.+.+++. +| .|.++++.+++.
T Consensus 357 --~~~~~~~~~Sp~~~~Ll~---e~------~gki~~~~l~Nr 388 (733)
T COG4590 357 --YQAPQLVAMSPNQAYLLS---ED------QGKIRLAQLENR 388 (733)
T ss_pred --hcCcceeeeCcccchhee---ec------CCceEEEEecCC
Confidence 225667889999988774 22 388999999854
No 426
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.19 E-value=7.3 Score=38.30 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC---CCCCceEe----------c-cCCCCEEEEEEcCCC--CCE
Q 010997 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---VGSPINKF----------E-GHSAAVLCVQWSPDK--SSV 387 (496)
Q Consensus 324 ~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~---~~~~~~~~----------~-~h~~~i~~l~~sp~~--~~l 387 (496)
-.|..+..++ .|..++..+.+|.+.++=.+.....+ .++++... . ...-.+..++|+|+. ..-
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 3577888899 89999999999976665433211110 02111111 1 112246688999986 223
Q ss_pred EEEEeCCCcEEEEECCCCCc
Q 010997 388 FGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 388 las~~~dg~i~iwd~~~~~~ 407 (496)
|..-+.|..|+|||+....+
T Consensus 183 L~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEEecCcEEEEEecCCcch
Confidence 44666799999999988543
No 427
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.13 E-value=10 Score=36.63 Aligned_cols=108 Identities=9% Similarity=0.172 Sum_probs=75.2
Q ss_pred cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc--eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~ 353 (496)
...++|.++.|++|. ..++.--.+.+|.+++....+... ....+..+..|....|+. ..-+|.-+..| +-+|-.
T Consensus 64 ~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQV 139 (657)
T ss_pred cCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEE
Confidence 345799999999998 789999999999999885443111 122233455688999986 35566665555 666655
Q ss_pred CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~ 392 (496)
..+ ...++..+.|...|.--.|.++-..+|.+.+
T Consensus 140 ~pe-----krslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 140 LPE-----KRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred chh-----hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 443 2556677788889999999998775554444
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.48 E-value=2.8 Score=37.07 Aligned_cols=68 Identities=6% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-ec-------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~-------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.+.+|++-+.+|.+++||+.+.+.......+.. +. .....|..+.++.+|.- +++-+ +|....|+..-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEEe-CCCEEEecccc
Confidence 678899999999999999998542211111111 11 35677899999988874 44554 67889998765
No 429
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.21 E-value=2.5 Score=25.21 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=23.0
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIW 400 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~d--g~i~iw 400 (496)
......-....|||||++|+.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455678899999999888777777 766666
No 430
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.84 E-value=21 Score=32.93 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=46.8
Q ss_pred CCCceeEEEEccCCCceEEEEc------CCCeEEEEEccCCCccceee-e-ccCCCCeEEEEecCCCC-cEEEEEc-CC-
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKV-E-KAHDADLHCVDWNPLDD-NLILTGS-AD- 345 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~-~-~~~~~~v~~i~~sp~~~-~~l~sgs-~d- 345 (496)
-.+.|++|.|..+. .+++.|. ....+..||..+........ . ..-.++|+.+.+...+. ++.+.|. .+
T Consensus 35 i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g 113 (281)
T PF12768_consen 35 ISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG 113 (281)
T ss_pred ceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence 45789999998554 6677664 45678899988776211111 0 12247888888854344 4444444 33
Q ss_pred -CcEEEEeCCC
Q 010997 346 -NSVRMFDRRN 355 (496)
Q Consensus 346 -g~i~iwd~~~ 355 (496)
..|.-||=.+
T Consensus 114 ~~~l~~~dGs~ 124 (281)
T PF12768_consen 114 STFLMKYDGSS 124 (281)
T ss_pred CceEEEEcCCc
Confidence 3566776554
No 431
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.47 E-value=35 Score=34.53 Aligned_cols=96 Identities=13% Similarity=0.200 Sum_probs=54.6
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE------------------cCCCcEEEEeCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG------------------SADNSVRMFDRR 354 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg------------------s~dg~i~iwd~~ 354 (496)
.++.++.+|.+...|.++++ .+...... ...++.+| ..+..+ ..+|.|.-+|+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~--~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGK--LISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCc--EeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 57788889999999999988 33222111 11223333 222221 235778888887
Q ss_pred CCCCCCCCCCceEeccCC--------CCE--EEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 355 NLTSNGVGSPINKFEGHS--------AAV--LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~--------~~i--~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+ ++.+-+..... .+. ..+.. .+.. +..++.||.|+.+|..++
T Consensus 375 t------G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~-v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 375 T------GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNL-VFAGAADGYFRAFDATTG 426 (488)
T ss_pred C------CcEeeEeeCCccccccccCCcccCcceEe--cCCe-EEEECCCCeEEEEECCCC
Confidence 7 55554443220 111 11222 3343 447778999999999885
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.42 E-value=14 Score=32.03 Aligned_cols=107 Identities=13% Similarity=0.266 Sum_probs=66.2
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---C---cEEEE-eCCCCCCCCCCCCc
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---N---SVRMF-DRRNLTSNGVGSPI 365 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g---~i~iw-d~~~~~~~~~~~~~ 365 (496)
.|+.+.....|.+|++.....+....+. --+.|..+.++. .|++|+|-=.+ . .+|+| +.+..... ..++
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~--~~~v 105 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE--NSPV 105 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc--CCcE
Confidence 3433356678999999966655666663 448899999999 89999985332 2 56665 33332110 1111
Q ss_pred e-Eecc---------------------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 366 N-KFEG---------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 366 ~-~~~~---------------------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
. .+-| -..++.+++-.|....|+ .|+ ++.+.+|.+...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 1 1111 234667888888665565 555 668999998763
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=11 Score=36.50 Aligned_cols=99 Identities=8% Similarity=0.215 Sum_probs=63.3
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
...++|.++.||+|.+ ++|.--.|+.|.+++.......+ +....+..-...|..+.|+.+...-+++
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l-----------~~~~~ck~k~~~IlGF~W~~s~e~A~i~- 130 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQL-----------EYTQECKTKNANILGFCWTSSTEIAFIT- 130 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhh-----------HHHHHhccCcceeEEEEEecCeeEEEEe-
Confidence 3467999999999998 68888889999999985421111 1122223334468899998764433332
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
+ .-+-+|.... ....++..+.|+-.|.-.+|.
T Consensus 131 -~--------~G~e~y~v~p-----ekrslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 131 -D--------QGIEFYQVLP-----EKRSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred -c--------CCeEEEEEch-----hhhhhhhhhhcccCccEEEEc
Confidence 2 3477777663 455667777777666544443
No 434
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.19 E-value=5.4 Score=33.76 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCC-----CCEEEEEeCCCcEEEEECCC
Q 010997 373 AAVLCVQWSPDK-----SSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 373 ~~i~~l~~sp~~-----~~llas~~~dg~i~iwd~~~ 404 (496)
..|.+++|||.| +.+||+...++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999943 56889999999999998765
No 435
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.81 E-value=30 Score=33.19 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=56.3
Q ss_pred EEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec-CCCCcEEEEEcC-----------------
Q 010997 283 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN-PLDDNLILTGSA----------------- 344 (496)
Q Consensus 283 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s-p~~~~~l~sgs~----------------- 344 (496)
...++|++ ..++-...+..|+-.|+++.+.. ..+......+-...|. ..++..++-.-.
T Consensus 85 g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~--~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 85 GGFLSPDD-RALYYVKNGRSLRRVDLDTLEER--VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp T-EE-TTS-SEEEEEETTTEEEEEETTT--EE--EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred ceEEecCC-CeEEEEECCCeEEEEECCcCcEE--EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 45667777 44544545568888899988733 3333344444445553 214444432211
Q ss_pred -----CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCc-EEEEECCCCC
Q 010997 345 -----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGL-LNIWDYEKVG 406 (496)
Q Consensus 345 -----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~-i~iwd~~~~~ 406 (496)
...|.-.|+.+ +. ...+-.-...+..+.|+|..+.+|+-|-+ |.. -+||-++..+
T Consensus 162 ~~a~p~~~i~~idl~t------G~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKT------GE-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp HHC---EEEEEEETTT---------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred HhhCCCceEEEEECCC------Cc-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 12234445554 33 23333345667889999998887765543 322 3677776543
No 436
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.64 E-value=0.14 Score=49.22 Aligned_cols=137 Identities=12% Similarity=0.248 Sum_probs=89.3
Q ss_pred CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 322 ~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd 401 (496)
+-.......|-| .+.-++.++.+..+..||-.. +...... ..+....++|.-++..+++.+-..+.+.+||
T Consensus 33 alv~pi~~~w~~-e~~nlavaca~tiv~~YD~ag-------q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 33 ALVGPIIHRWRP-EGHNLAVACANTIVIYYDKAG-------QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred hccccceeeEec-CCCceehhhhhhHHHhhhhhc-------ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeech
Confidence 333444567888 555588888999999999764 4444443 3445568889888887766777789999999
Q ss_pred CCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH
Q 010997 402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE 481 (496)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~ 481 (496)
+.+.. .+. +..-..|.... +.|++..+.++ .|-..|.+.|++.. ....+..
T Consensus 104 ~n~ey-tqq------------LE~gg~~s~sl--l~wsKg~~el~--------ig~~~gn~viynhg------tsR~iiv 154 (615)
T KOG2247|consen 104 VNSEY-TQQ------------LESGGTSSKSL--LAWSKGTPELV--------IGNNAGNIVIYNHG------TSRRIIV 154 (615)
T ss_pred hhhhh-HHH------------HhccCcchHHH--HhhccCCcccc--------ccccccceEEEecc------chhhhhh
Confidence 98732 111 11111222233 67888666655 34445889999887 4555555
Q ss_pred HHhccceEEEeccCC
Q 010997 482 LEKFKAHVISCTSKP 496 (496)
Q Consensus 482 l~~h~~~v~~~~~sP 496 (496)
+-.|..+++.+++.|
T Consensus 155 ~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 155 MGKHQRRGTQIAVTL 169 (615)
T ss_pred hcccccceeEEEecc
Confidence 555888888887754
No 437
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.62 E-value=10 Score=37.36 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=50.3
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEcc---------CCCccce-eee--------ccCCCCeEEEEecCCC--CcE
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDAR---------VGTSPVI-KVE--------KAHDADLHCVDWNPLD--DNL 338 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~-~~~--------~~~~~~v~~i~~sp~~--~~~ 338 (496)
-.|..+..++.| ..++-.|.+|.+.++=.+ .++.... +++ ....-.+..++|+|++ +..
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 467888899999 567777777876665422 1211110 110 1112345678999965 677
Q ss_pred EEEEcCCCcEEEEeCCCCC
Q 010997 339 ILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 339 l~sgs~dg~i~iwd~~~~~ 357 (496)
|..-+.|..||+||+...+
T Consensus 183 L~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEEecCcEEEEEecCCcc
Confidence 8888899999999998744
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.12 E-value=46 Score=34.62 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=42.6
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
|.+-++..+|..-.-++ +.-..|+||++..... -..+-.|. .+-++.|+.+. .|+....||++
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL------------~~~~w~~~--~lI~mgWs~~e-eLI~v~k~g~v 106 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLL------------GRILWKHG--ELIGMGWSDDE-ELICVQKDGTV 106 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEeccccch------------HHHHhcCC--CeeeecccCCc-eEEEEeccceE
Confidence 34445555552222222 4445799999876521 11222333 35699999665 57777889999
Q ss_pred EEEecCC
Q 010997 221 VLWSIQD 227 (496)
Q Consensus 221 ~iwd~~~ 227 (496)
.++++-.
T Consensus 107 ~Vy~~~g 113 (829)
T KOG2280|consen 107 HVYGLLG 113 (829)
T ss_pred EEeecch
Confidence 9999864
No 439
>PLN02153 epithiospecifier protein
Probab=86.09 E-value=32 Score=32.78 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=14.2
Q ss_pred CCcEEEEEeCC-------CcEEEEeCCCC
Q 010997 152 NTKIVATHTDS-------PDVLIWDVEAQ 173 (496)
Q Consensus 152 ~~~~lat~~~d-------g~i~iwd~~~~ 173 (496)
++.+++.|+.+ ..+.+||+.+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 60 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH 60 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCC
Confidence 45677777653 25788887765
No 440
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.95 E-value=44 Score=34.17 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=18.5
Q ss_pred ceEEEEcCCCeEEEEEccCCC
Q 010997 292 QEFCSVGDDSCLILWDARVGT 312 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~ 312 (496)
..++.+..+|.+.+.|.++++
T Consensus 316 ~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 316 KLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEEEeCCCceEEEEECCCCc
Confidence 378889999999999999887
No 441
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.79 E-value=13 Score=38.18 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.2
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQD 227 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~ 227 (496)
-++++.-+|.++-++++..||+|++++...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 467788889999999999999999999864
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.61 E-value=23 Score=30.77 Aligned_cols=117 Identities=10% Similarity=0.149 Sum_probs=67.8
Q ss_pred cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC---C---cEEEE---ECCCCC-
Q 010997 337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---G---LLNIW---DYEKVG- 406 (496)
Q Consensus 337 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d---g---~i~iw---d~~~~~- 406 (496)
..|..+.....|.+|++.... ..++.+|.. -+.|..+.++..|.+++ |--.+ . .+|+| ......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~----~~~~~~F~T-v~~V~~l~y~~~GDYlv-TlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE----CPLLCTFST-VGRVLQLVYSEAGDYLV-TLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC----CceeEEEcc-hhheeEEEeccccceEE-EEEeecCCccceEEEEEEEhhhhcccC
Confidence 444444666789999998432 567777765 48899999999999865 54322 2 45554 322110
Q ss_pred cccC----C---CC--CCCCC-CCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 407 KKVE----Q---GP--RTTNY-PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 407 ~~~~----~---~~--~~~~~-~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
.... . .. .+... ..+ +..+. -..++.+++..|..+.+++++. +++.||.+...
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qle-iiElP-l~~~p~ciaCC~~tG~LlVg~~---------~~l~lf~l~~~ 165 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLE-IIELP-LSEPPLCIACCPVTGNLLVGCG---------NKLVLFTLKYQ 165 (215)
T ss_pred CcEEEEEcccccccCCCCccccceE-EEEec-CCCCCCEEEecCCCCCEEEEcC---------CEEEEEEEEEE
Confidence 0000 0 00 00000 011 11122 2457788999998778877654 78999998754
No 443
>PRK10115 protease 2; Provisional
Probab=85.26 E-value=55 Score=34.74 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=41.7
Q ss_pred ceeEEEecCCCCcEEEEEeC-CC----cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 142 EVNRIRELPQNTKIVATHTD-SP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+..+.++| ++++||-+.+ +| .|++-|+.++.... ..+.+ .-..++|.++++.|+-...
T Consensus 128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----------~~i~~----~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----------ELLDN----VEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----------ccccC----cceEEEEeeCCCEEEEEEe
Confidence 466778888 7777765543 33 68899987662110 11111 1146899999875554432
Q ss_pred C------CcEEEEecCCc
Q 010997 217 D------KSVVLWSIQDH 228 (496)
Q Consensus 217 D------g~i~iwd~~~~ 228 (496)
+ ..|..+++.++
T Consensus 192 ~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred cCCCCCCCEEEEEECCCC
Confidence 2 35666666654
No 444
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.97 E-value=8.9 Score=36.99 Aligned_cols=167 Identities=12% Similarity=0.116 Sum_probs=93.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcce-eeeecCCCCceEEecCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF-ALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~-~l~~~p~~~~l~sg~~D 217 (496)
-...|..+-..| +++.+..-+. .++.|+++.+...... +..-...+.....|+ .+..-..|.-|+.++.|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~r-------kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIR-------KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchh-------hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 456778888888 8887776555 5899999887632211 000011121111232 33333455668888899
Q ss_pred CcEEEE-ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 218 KSVVLW-SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 218 g~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
|-|.-| |++.... +....++.++-...++.-+.-- ...+-|++
T Consensus 290 G~vsQWFdvr~~~~-----------------------------------p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~ 333 (733)
T COG4590 290 GLVSQWFDVRRDGQ-----------------------------------PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYS 333 (733)
T ss_pred CceeeeeeeecCCC-----------------------------------CcceeeeccccCcccceeeccc-cccceEEE
Confidence 999888 4442211 1111112222222233222211 12246888
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
-+..|++.++.....+ ... +..--..+.-+++|| .+.++++- ..|.|+++.+.+
T Consensus 334 l~~~G~L~~f~st~~~--~lL-~~~~~~~~~~~~~Sp-~~~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 334 LYRNGTLQSFYSTSEK--LLL-FERAYQAPQLVAMSP-NQAYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred EcCCCceeeeecccCc--cee-hhhhhcCcceeeeCc-ccchheee-cCCceEEEEecC
Confidence 8888998888655444 222 222334677889999 88888775 456799998887
No 445
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.54 E-value=14 Score=36.04 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=57.5
Q ss_pred CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEE-E---Ee-------------c
Q 010997 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC-V---DW-------------N 332 (496)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-i---~~-------------s 332 (496)
....+......+.+++.+|.+ .+.++...=|.|.++|+..+. .++..++-.+.=.. + .- .
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~--vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGI--VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred eEEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCCh--hhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 344556666789999999997 777777777999999998876 44444332221100 0 00 0
Q ss_pred CCCC-cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 333 PLDD-NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 333 p~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
+... .+++-+-.-|.|.||.++. +..+..+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~------g~Rv~a~~ 407 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQ------GPRVAAFN 407 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCC------CCEEEEEE
Confidence 0001 1334466789999999998 66666654
No 446
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.07 E-value=32 Score=31.11 Aligned_cols=191 Identities=9% Similarity=0.023 Sum_probs=96.9
Q ss_pred cceeeeecCCCCceEEecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee
Q 010997 198 AEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 275 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (496)
-..++.|..++.++-|.+.-| .|+.+|+.+++.......
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--------------------------------------- 86 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--------------------------------------- 86 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE----------------------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC---------------------------------------
Confidence 345788877888888888766 789999987643211110
Q ss_pred cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
...---..++...+ .++.-.=.++...+||..+-+ .+..+ .....-..++. ++..|+.+.....|.++|..+
T Consensus 87 ~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~--~~~~~-~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 87 PPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK--KIGTF-PYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE--EEEEE-E-SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT
T ss_pred CccccceeEEEECC--EEEEEEecCCeEEEEccccce--EEEEE-ecCCcceEEEc---CCCEEEEECCccceEEECCcc
Confidence 01111223333322 344444567889999998765 33333 23345566663 455666666677899999887
Q ss_pred CCCCCCCCCceEeccC-----CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-----
Q 010997 356 LTSNGVGSPINKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ----- 425 (496)
Q Consensus 356 ~~~~~~~~~~~~~~~h-----~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----- 425 (496)
+ ....++... -..++-+.|- +|. |+|=.-....|..-|..++.- ....+.. .+...
T Consensus 159 f------~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V-~~~iDls-----~L~~~~~~~~ 224 (264)
T PF05096_consen 159 F------KEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGKV-VGWIDLS-----GLRPEVGRDK 224 (264)
T ss_dssp -------SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BE-EEEEE-H-----HHHHHHTSTT
T ss_pred c------ceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeE-EEEEEhh-----Hhhhcccccc
Confidence 3 334433321 1234555554 332 454444444455555554210 0000000 00000
Q ss_pred -ecCCCCCcceEEecCCCCcEEEEe
Q 010997 426 -HAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 426 -~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
...-.+..+.+||.|....+++++
T Consensus 225 ~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 225 SRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccCCeeEeEeEeCCCCEEEEEe
Confidence 001135678999999998888865
No 447
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=83.56 E-value=15 Score=35.96 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=38.1
Q ss_pred cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 321 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 321 ~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
.....+.+|+.+| ++.+.|+...=|.|.|+|+.+ +..++.+++-.+.
T Consensus 305 D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~------~~vvrmWKGYRdA 351 (415)
T PF14655_consen 305 DSKREGESICLSP-SGRLAAVTDSLGRVLLIDVAR------GIVVRMWKGYRDA 351 (415)
T ss_pred cCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCC------ChhhhhhccCccc
Confidence 3445688999999 799999888889999999998 7778877776553
No 448
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=83.09 E-value=72 Score=34.32 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC----CCce---Eec------cCCCCEEEEEEcCCCCCEEEE
Q 010997 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG----SPIN---KFE------GHSAAVLCVQWSPDKSSVFGS 390 (496)
Q Consensus 324 ~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~----~~~~---~~~------~h~~~i~~l~~sp~~~~llas 390 (496)
..|.+|+... -+.+++..-.||+|.++|..++...... .... .+. ..-..+..++|||.+.. ++.
T Consensus 260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~-~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS-LVQ 337 (753)
T ss_pred CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccce-EEE
Confidence 5577777766 6789999999999999999886421111 1111 110 11124456889999884 567
Q ss_pred EeCCCcEE
Q 010997 391 SAEDGLLN 398 (496)
Q Consensus 391 ~~~dg~i~ 398 (496)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 77788866
No 449
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.07 E-value=73 Score=34.39 Aligned_cols=127 Identities=12% Similarity=0.169 Sum_probs=73.8
Q ss_pred cCCCceeEEEEc---c--CCCceEEEEcCCCeEEEEEc------cCCCc-------cceeeec---cCCCCeEEEEecCC
Q 010997 276 GHEDTVEDVTFC---P--SSAQEFCSVGDDSCLILWDA------RVGTS-------PVIKVEK---AHDADLHCVDWNPL 334 (496)
Q Consensus 276 ~h~~~v~~l~~~---~--~~~~~l~s~~~dg~i~iwd~------~~~~~-------~~~~~~~---~~~~~v~~i~~sp~ 334 (496)
.-..+|..|+|. . +....++..-....+.|+.. ..... ..+..+. ....+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 11112344445566777661 11110 0111111 13456789999998
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC----------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~----------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
+...||+-...|...|||+....... ...+.....+. ..-..+.|.++...|| .++ ...+.++|+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~-~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRK-SSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccC-CcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 88899999999999999992211100 01111111111 3345889988877665 443 56799999987
Q ss_pred C
Q 010997 405 V 405 (496)
Q Consensus 405 ~ 405 (496)
.
T Consensus 234 ~ 234 (765)
T PF10214_consen 234 N 234 (765)
T ss_pred C
Confidence 4
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=82.73 E-value=45 Score=31.73 Aligned_cols=108 Identities=14% Similarity=0.195 Sum_probs=58.7
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
...+.++.+.|++ .+++ .+..|.+..- .+.+...-......-...++++.+.+ ++..+++| ..|.+++=....
T Consensus 172 ~g~~~~i~~~~~g-~~v~-~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~-- 244 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVA-VSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDD-- 244 (334)
T ss_pred cceEEEEEECCCC-eEEE-EeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCC--
Confidence 4568889999887 4444 4455655432 11221111112223456789999999 77777665 567665322222
Q ss_pred CCCCCCCceEecc----CCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 358 SNGVGSPINKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 358 ~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
+..-..... -...+..+.+.|++. +++ ++.+|.|.
T Consensus 245 ----G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~ 283 (334)
T PRK13684 245 ----LESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLL 283 (334)
T ss_pred ----CCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEE
Confidence 111111111 124578899999876 554 44577554
No 451
>PLN02193 nitrile-specifier protein
Probab=81.88 E-value=60 Score=32.63 Aligned_cols=62 Identities=6% Similarity=-0.083 Sum_probs=32.1
Q ss_pred ceEEEEcCCC-----eEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCC----CcEEEEeCCCC
Q 010997 292 QEFCSVGDDS-----CLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNL 356 (496)
Q Consensus 292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~d----g~i~iwd~~~~ 356 (496)
.+++.|+.++ .+..||+.+.+...+... .........+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCCccCceEEEECCCC
Confidence 5666776543 467788776552111110 001111122222 45677777655 45889998873
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.28 E-value=11 Score=33.28 Aligned_cols=65 Identities=9% Similarity=0.188 Sum_probs=42.2
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCcccee-----eec-------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIK-----VEK-------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~-------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
..+ .++++.+.+|.+++||+.+.+..... .+. .....|..+.++. +|.-+++-+ +|....||...
T Consensus 20 ~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecccc
Confidence 344 67889999999999999987621110 011 2445677777776 666655543 56777777664
No 453
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.08 E-value=33 Score=37.98 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCCceeEEEEccCCCceEEEEcCCCeEEEEEcc----CC---C-c--------------cceeeec-cCCCCeEEEEecC
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VG---T-S--------------PVIKVEK-AHDADLHCVDWNP 333 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~~---~-~--------------~~~~~~~-~~~~~v~~i~~sp 333 (496)
....|+|+....+| ++|++|- || .+|.+. .+ + + |.+.... .+.++|..++...
T Consensus 177 dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 177 DGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 34578899866666 6666654 45 444331 11 0 0 1111122 5677999999998
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCC
Q 010997 334 LDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 334 ~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
..+.+.+-+..|+|.+||+...
T Consensus 253 -SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 253 -SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred -ccceeeeeccCceEEEEEccCC
Confidence 7889999999999999999873
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.98 E-value=14 Score=35.08 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=20.9
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEec
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSI 225 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~ 225 (496)
-++|+|.|+|+.|++ ...|.|++++.
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~ 29 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDK 29 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEET
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeC
Confidence 368999999876654 56999999993
No 455
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=38 Score=37.52 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=29.7
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~ 173 (496)
...+-+.....++|.| ...++|.|+.+|.|+++-...-
T Consensus 30 ~~~G~~~~~~~~afD~-~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 30 NRHGFPSTPSALAFDP-TQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred eecCCCCCCcceeecc-ccceEEEEEecccEEEecccce
Confidence 3344555677888999 7789999999999999976543
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.74 E-value=8.4 Score=36.59 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=58.7
Q ss_pred CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe----ccCCCCEEEEEEcCC---CCCEEEEEeCC---
Q 010997 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF----EGHSAAVLCVQWSPD---KSSVFGSSAED--- 394 (496)
Q Consensus 325 ~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~i~~l~~sp~---~~~llas~~~d--- 394 (496)
....|+|.| ++.+|++ ...|.|++++..... ...+..+ .........++++|+ ..+|+++.+..
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~~~g~~----~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVDKDGSL----KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEETTTEE----CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEeCCCcC----cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 357899999 7877765 459999999932210 0122222 233457899999994 34466555532
Q ss_pred -----CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC---CCCCcceEEecCCCCcEEEEecCC
Q 010997 395 -----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 395 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
..|.-|.+........ .+..++..... ....-..|+|.|++ .|+++.++.
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~-------~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~ 134 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLS-------SEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDG 134 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEE-------EEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-T
T ss_pred CCCcceeeEEEeccCCccccc-------cceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCC
Confidence 2333344433100000 01122222222 23345679999988 777777764
No 457
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.33 E-value=82 Score=33.18 Aligned_cols=72 Identities=26% Similarity=0.440 Sum_probs=43.1
Q ss_pred eEEEEecCCCCcEEEEEcCCC-----cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997 326 LHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 400 (496)
Q Consensus 326 v~~i~~sp~~~~~l~sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iw 400 (496)
-..+.|-| .|..+++-..|| .|.++...-+.. |..-. -.+-...+..++|+-... ++|. +..+.|.+|
T Consensus 249 e~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrH---Gef~l-r~~~dEk~~~~~wn~~s~-vlav-~~~n~~~lw 321 (1243)
T COG5290 249 EHQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRH---GEFDL-RVGCDEKAFLENWNLLST-VLAV-AEGNLLKLW 321 (1243)
T ss_pred hhcccccc-CCceeeeeccCCCCCcceEEEEccCCccc---CCccc-cCCchhhhhhhhhhHHHH-HHHH-hhcceEEEE
Confidence 34589999 899999877555 355665443221 11111 112344567788876665 4533 346789999
Q ss_pred ECCC
Q 010997 401 DYEK 404 (496)
Q Consensus 401 d~~~ 404 (496)
-...
T Consensus 322 ttkN 325 (1243)
T COG5290 322 TTKN 325 (1243)
T ss_pred Eccc
Confidence 8765
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.68 E-value=64 Score=31.53 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=39.8
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw 351 (496)
..+.++.|.+++ . ++.++..|.+.... ..++. ........-...++.+.|.+ ++..+++| .+|.|.-|
T Consensus 328 ~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 328 FGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCceEEEe-CCcEEEEe
Confidence 358889998776 4 55556677766653 23331 11111122345688999976 55555555 67776544
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.66 E-value=29 Score=27.64 Aligned_cols=110 Identities=13% Similarity=0.143 Sum_probs=65.5
Q ss_pred EEEccCCCceEEEEcCCCeEEEEEccCCCc------cceeeeccCCCCeEEEEecCC----CCcEEEEEcCCCcEEEEeC
Q 010997 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTS------PVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDR 353 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~i~~sp~----~~~~l~sgs~dg~i~iwd~ 353 (496)
-.|....+ -|++++..|.|.|++...... ..+.. ..-...|++|+-.+. ....|+.|+.. .|..||.
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~-LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISF-LNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeE-EECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 35555553 577788889999998765431 11222 245677888865442 35677777654 6999999
Q ss_pred CCCCCCCCCCCceEeccCCCCEEEEEEcC---CCCCEEEEEeCCCcEEEEECCC
Q 010997 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp---~~~~llas~~~dg~i~iwd~~~ 404 (496)
.+. .-+. ++.-...|.++.+-. ....+++.|+ +..|.-||...
T Consensus 81 ~~N------~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 81 ENN------SDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred ccC------chhh-hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 983 2222 222346677776632 1222444554 66777777654
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.96 E-value=29 Score=38.42 Aligned_cols=158 Identities=14% Similarity=0.201 Sum_probs=82.2
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe--------cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC---c
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW--------NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP---I 365 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~--------sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---~ 365 (496)
.+.|+.+.+|+..++. -...+.+-...|..|.. .|.=..+|+.+ .--.|.|+-+........... .
T Consensus 95 iTiDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred EEeCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCcccccccc
Confidence 3457899999999855 23334455555655543 23112334443 344465554432111000000 1
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCccc--CC-------CC-CCCCCCCeeEEEecCCCCCcce
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV--EQ-------GP-RTTNYPAGLFFQHAGHRDKVVD 435 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~--~~-------~~-~~~~~~~~~~~~~~~h~~~V~~ 435 (496)
.++......|.++....+|+ +|.+| .|| .||.+.-....- .. .. ......+.++....++.++|..
T Consensus 172 ~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred eeeecCCceEEEEEeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 22333356788999777887 67444 566 566654311110 00 00 0000111122222477889999
Q ss_pred EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+..... ..++.+-++. |+|++|++..
T Consensus 248 i~ID~S-R~IlY~lsek-------~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNS-RNILYVLSEK-------GTVSAYDIGG 273 (1311)
T ss_pred eEeccc-cceeeeeccC-------ceEEEEEccC
Confidence 999874 4455555544 9999999985
No 461
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.67 E-value=56 Score=30.26 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=75.1
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCC-----Cccceeeecc-----CCCCeEEEEecCC-----------CCc
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVIKVEKA-----HDADLHCVDWNPL-----------DDN 337 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~v~~i~~sp~-----------~~~ 337 (496)
..-+.|+++|.+ .+-++....+...+||.... ..++...... .....+.+.|+.. ...
T Consensus 23 ~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 345789999988 67777778899999998721 1222333221 2346778888752 113
Q ss_pred EEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-cCCCCE-EEEEEcCC--CCCEEEEEeCCCcEEEEECCC
Q 010997 338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAV-LCVQWSPD--KSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i-~~l~~sp~--~~~llas~~~dg~i~iwd~~~ 404 (496)
.++.+++||+|.-|...-....- ......+. ...+.| ..+++... +.+|+|+--..++|.|||-.-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~-~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRM-TRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccc-cccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 36778899999999854311000 01112232 112333 35666543 566777777789999999765
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.34 E-value=80 Score=31.39 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe----c-cCCCCEEEEEEcCCC
Q 010997 323 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF----E-GHSAAVLCVQWSPDK 384 (496)
Q Consensus 323 ~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~----~-~h~~~i~~l~~sp~~ 384 (496)
-.....|+|.| ++.+|++--..|.|++++..... ...+..+ . .-......|+++|+-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~----~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGE----VKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCc----eeeeecCCceeccCCCCceeeEEECCCc
Confidence 34568899999 88888776557999999865421 1111111 1 135678999999884
No 463
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.93 E-value=79 Score=31.08 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=77.9
Q ss_pred HhhhhCcCCCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEE
Q 010997 56 DWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHK 135 (496)
Q Consensus 56 ~~~~~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (496)
+.++...+.-|.|.++.++.+..... ..|.+ =.|+.|.|+.+.......... . ..+...
T Consensus 63 ~lllE~~l~~PILqv~~G~F~s~~~~---~~LaV------LhP~kl~vY~v~~~~g~~~~g----------~--~~~L~~ 121 (418)
T PF14727_consen 63 DLLLETQLKDPILQVECGKFVSGSED---LQLAV------LHPRKLSVYSVSLVDGTVEHG----------N--QYQLEL 121 (418)
T ss_pred cEEEEEecCCcEEEEEeccccCCCCc---ceEEE------ecCCEEEEEEEEecCCCcccC----------c--EEEEEE
Confidence 67777788889998887765332211 12211 156677777764432211100 0 122222
Q ss_pred EecCCC--ceeEEEecCC----CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997 136 TIIHPG--EVNRIRELPQ----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (496)
Q Consensus 136 ~~~h~~--~V~~l~~~p~----~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~ 209 (496)
...|.- ....+.+-|. +..+|..-+.||.+.+|+-+... ....+.+.-- --.+.+.+...
T Consensus 122 ~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~------------f~~~lp~~ll--PgPl~Y~~~tD 187 (418)
T PF14727_consen 122 IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA------------FSRFLPDFLL--PGPLCYCPRTD 187 (418)
T ss_pred EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE------------EEEEcCCCCC--CcCeEEeecCC
Confidence 333322 2222222231 24789999999999999977651 1222222211 23578888888
Q ss_pred ceEEecCCCcEEEEecCC
Q 010997 210 YVLSGGKDKSVVLWSIQD 227 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~ 227 (496)
.|++++.+..|.-|....
T Consensus 188 sfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQD 205 (418)
T ss_pred EEEEecCceeEEEecHHH
Confidence 899999999999988653
No 464
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=76.80 E-value=36 Score=27.14 Aligned_cols=116 Identities=9% Similarity=0.122 Sum_probs=66.8
Q ss_pred eeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce
Q 010997 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 281 (496)
Q Consensus 202 l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 281 (496)
-.|......|+.++.-|+|.|++.......... ....+..+ .-...|
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------------------------------~~~~i~~L-Nin~~i 50 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------------------------------QDSDISFL-NINQEI 50 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc--------------------------------ccCceeEE-ECCCce
Confidence 356555667888888999999987643221100 11112222 234567
Q ss_pred eEEEEcc---C-CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC---CCcEEEEEcCCCcEEEEeCC
Q 010997 282 EDVTFCP---S-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL---DDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 282 ~~l~~~~---~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~~l~sgs~dg~i~iwd~~ 354 (496)
++|+-.+ + +...|+.|+ ...|..||+..... ..++.-.+.|+++.+-.. ...++++| .+..|.-||..
T Consensus 51 talaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d---~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 51 TALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSD---LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred EEEEEEecCCCCCcCEEEEec-cceEEEEEcccCch---hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 7776544 2 234566655 56899999987762 223345578888877321 23444444 45567777655
Q ss_pred C
Q 010997 355 N 355 (496)
Q Consensus 355 ~ 355 (496)
-
T Consensus 126 G 126 (136)
T PF14781_consen 126 G 126 (136)
T ss_pred C
Confidence 3
No 465
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.35 E-value=80 Score=30.87 Aligned_cols=107 Identities=13% Similarity=0.228 Sum_probs=56.1
Q ss_pred eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
...+..++++ .+++.+.....++-||--.... ..........+..+.|.+ ++.+++++ ..|.+..= ...
T Consensus 241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W--~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~S-~d~----- 309 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYW--QPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYVS-KGT----- 309 (398)
T ss_pred eeeEEEcCCC-CEEEEECCccEEEecCCCCcce--EEecCCCccceeeeeEcC-CCCEEEEe-CCceEEEe-cCC-----
Confidence 3445566666 4455544333333344321110 111223456788999988 77777666 55655432 222
Q ss_pred CCC-----CceEecc--CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997 361 VGS-----PINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 361 ~~~-----~~~~~~~--h~~~i~~l~~sp~~~~llas~~~dg~i~iwd 401 (496)
+. .+..... -...+..+.|.+++. ++ .++..|.+....
T Consensus 310 -G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s~ 354 (398)
T PLN00033 310 -GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRST 354 (398)
T ss_pred -CCcccccceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEeC
Confidence 11 2222221 123589999998877 55 455578766543
No 466
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.23 E-value=14 Score=22.11 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=19.5
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC
Q 010997 382 PDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 382 p~~~~llas~~~dg~i~iwd~~~~ 405 (496)
|++++++++...++.|.++|..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 577778887877899999998663
No 467
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=75.87 E-value=62 Score=29.36 Aligned_cols=194 Identities=8% Similarity=0.064 Sum_probs=100.2
Q ss_pred cceEEEecCCCce--eEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC
Q 010997 131 VKKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206 (496)
Q Consensus 131 ~~~~~~~~h~~~V--~~l~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p 206 (496)
.++++...|.... -.+.|.. ++.++-+.+.-| .|+.+|+.++... ....-...----+++..
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~------------~~~~l~~~~FgEGit~~- 98 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVL------------QSVPLPPRYFGEGITIL- 98 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEE------------EEEE-TTT--EEEEEEE-
T ss_pred eEEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEE------------EEEECCccccceeEEEE-
Confidence 3566777776543 4456655 677877877766 7999999988321 11111110001123332
Q ss_pred CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
+++...-.=.++...+||.++-+. +..+.- .+.=..++
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl~~----------------------------------------~~~~~y-~~EGWGLt- 136 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTLKK----------------------------------------IGTFPY-PGEGWGLT- 136 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEE----------------------------------------EEEEE--SSS--EEE-
T ss_pred CCEEEEEEecCCeEEEEccccceE----------------------------------------EEEEec-CCcceEEE-
Confidence 222333344678888898864322 222221 23445565
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccceeeec--cC---CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AH---DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~---~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
.++ ..|+.......|.++|..+.+ ...... .. -..++-+.|- ++.+.|=.=....|...|..+
T Consensus 137 -~dg-~~Li~SDGS~~L~~~dP~~f~--~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t------ 204 (264)
T PF05096_consen 137 -SDG-KRLIMSDGSSRLYFLDPETFK--EVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET------ 204 (264)
T ss_dssp -ECS-SCEEEE-SSSEEEEE-TTT-S--EEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT------
T ss_pred -cCC-CEEEEECCccceEEECCcccc--eEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC------
Confidence 445 445555556789999987655 222211 11 1245556664 455555555555666666666
Q ss_pred CCCceEec---------------cCCCCEEEEEEcCCCCCEEEEEe
Q 010997 362 GSPINKFE---------------GHSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 362 ~~~~~~~~---------------~h~~~i~~l~~sp~~~~llas~~ 392 (496)
+..+..+. ....-.+.+|+.|....+++||=
T Consensus 205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 44444331 01345789999999888888874
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=75.69 E-value=12 Score=22.23 Aligned_cols=31 Identities=3% Similarity=0.169 Sum_probs=20.9
Q ss_pred cCCCceeEEEEccCCCceEEEEcCC--CeEEEE
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGDD--SCLILW 306 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~iw 306 (496)
.....-....|+|+|..++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999997777777666 666665
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.38 E-value=14 Score=22.06 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=18.9
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCC
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGT 312 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (496)
|++..++++...+++|.++|..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 4564567777788999999997665
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.29 E-value=85 Score=29.73 Aligned_cols=170 Identities=13% Similarity=0.142 Sum_probs=87.5
Q ss_pred ceeEEEEccCCCceEEEEcCC------CeEEEEEccCCCc------ccee-------eeccCCCCeEEEEecCCCCcEEE
Q 010997 280 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTS------PVIK-------VEKAHDADLHCVDWNPLDDNLIL 340 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~------~~~~-------~~~~~~~~v~~i~~sp~~~~~l~ 340 (496)
...+|++.+++ .++++.-.+ ..|..++.. +.. |... .....+..+-+|+++| ++..|.
T Consensus 86 D~Egi~~~~~g-~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDG-SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF 162 (326)
T ss_pred ChhHeEEecCC-CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence 45678886666 677777667 788888865 331 1101 1123456788999999 888555
Q ss_pred EEcC-----CC--c-------EEEEeCCCCCCC-CCCCCceEecc-----CCCCEEEEEEcCCCCCEEEEEe----CCCc
Q 010997 341 TGSA-----DN--S-------VRMFDRRNLTSN-GVGSPINKFEG-----HSAAVLCVQWSPDKSSVFGSSA----EDGL 396 (496)
Q Consensus 341 sgs~-----dg--~-------i~iwd~~~~~~~-~~~~~~~~~~~-----h~~~i~~l~~sp~~~~llas~~----~dg~ 396 (496)
++.. |+ . ++|+........ ........+.. ....|..+.+-++++.++.==+ ....
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~ 242 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY 242 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce
Confidence 5433 22 1 555544431100 00112222332 4567899999999984332222 2345
Q ss_pred EEEEECCCCCc--ccCCCCC----CCCCCCeeEEEecC---CCCCcceEEecC--CCCcEEEEecCC
Q 010997 397 LNIWDYEKVGK--KVEQGPR----TTNYPAGLFFQHAG---HRDKVVDFHWNA--SDPWTVVSVSDD 452 (496)
Q Consensus 397 i~iwd~~~~~~--~~~~~~~----~~~~~~~~~~~~~~---h~~~V~~~~~~p--~~~~l~~s~s~d 452 (496)
++|+-+..... ....... .......+++.+.. ....+-.|+|-| ++...++-+++|
T Consensus 243 ~ri~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDn 309 (326)
T PF13449_consen 243 KRIYRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDN 309 (326)
T ss_pred EEEEEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECC
Confidence 66665543211 1100000 00112223332222 145678899976 566666666665
No 471
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=73.19 E-value=15 Score=26.82 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=26.6
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
..+.|.++|++++|+++....+.|++|....
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4578999999999998888899999998754
No 472
>PLN02193 nitrile-specifier protein
Probab=72.19 E-value=1.1e+02 Score=30.69 Aligned_cols=62 Identities=8% Similarity=0.130 Sum_probs=33.4
Q ss_pred ceEEEEcCC----CeEEEEEccCCCccceeeec--cCC-CCeEEEEecCCCCcEEEEEcCC--------------CcEEE
Q 010997 292 QEFCSVGDD----SCLILWDARVGTSPVIKVEK--AHD-ADLHCVDWNPLDDNLILTGSAD--------------NSVRM 350 (496)
Q Consensus 292 ~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~--~~~-~~v~~i~~sp~~~~~l~sgs~d--------------g~i~i 350 (496)
.+++.++.+ ..+.+||+.+.+...+.... ... ....++.+ ++.+++.|+.+ ..+.+
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV---GKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---CCEEEEECCccCCccccccCccceeccEEE
Confidence 456666544 45889999876632221110 011 11122232 56777888753 24778
Q ss_pred EeCCCC
Q 010997 351 FDRRNL 356 (496)
Q Consensus 351 wd~~~~ 356 (496)
||+.+.
T Consensus 407 ~D~~t~ 412 (470)
T PLN02193 407 LDTETL 412 (470)
T ss_pred EEcCcC
Confidence 888763
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=71.79 E-value=92 Score=29.49 Aligned_cols=169 Identities=18% Similarity=0.269 Sum_probs=94.4
Q ss_pred CceeEEEEccCCCceEEEEcCCCe------EEEEEccCCCc--ccee-----eeccCC--------CCeEEEEecCCCCc
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSC------LILWDARVGTS--PVIK-----VEKAHD--------ADLHCVDWNPLDDN 337 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~------i~iwd~~~~~~--~~~~-----~~~~~~--------~~v~~i~~sp~~~~ 337 (496)
+.+..|.+.+.+ ..+++.+++|. +..+++..... ..+. .+..-. ...-+|++.+ ++.
T Consensus 20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 567888998765 56788888888 66666554110 0000 111111 1444788855 777
Q ss_pred EEEEEcCC------CcEEEEeCCCCCCCCCCCCceEe---------------ccCCCCEEEEEEcCCCCCEEEEEeC---
Q 010997 338 LILTGSAD------NSVRMFDRRNLTSNGVGSPINKF---------------EGHSAAVLCVQWSPDKSSVFGSSAE--- 393 (496)
Q Consensus 338 ~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~~~---------------~~h~~~i~~l~~sp~~~~llas~~~--- 393 (496)
++++.=.+ ..|.-+|..- ..+..+ .......-+|+++|+|..|+ ++.+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G-------~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~-~~~E~~l 169 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDG-------RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLF-AAMESPL 169 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCC-------cccceEccccccccccCccccccCCCCeEEEEECCCCCEEE-EEECccc
Confidence 77776666 6788887551 222211 12355688999999999655 3332
Q ss_pred --CCc---------EEEEECCCCCcccCCCCCCCCCCCeeEEEecC-----CCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 394 --DGL---------LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-----HRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 394 --dg~---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
|+. ++|+.+....... ...+..+.+.. ....|.++.+-+++..+++-=+. ..+
T Consensus 170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~--------~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~---~~~ 238 (326)
T PF13449_consen 170 KQDGPRANPDNGSPLRILRYDPKTPGE--------PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDF---SPG 238 (326)
T ss_pred cCCCcccccccCceEEEEEecCCCCCc--------cceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccC---CCC
Confidence 221 4555444321000 12233444432 45679999999988755543221 333
Q ss_pred CCCeEEEeecC
Q 010997 458 GGGTLQIWRMS 468 (496)
Q Consensus 458 ~Dg~i~iw~~~ 468 (496)
....++|+.+.
T Consensus 239 ~~~~~ri~~v~ 249 (326)
T PF13449_consen 239 TGNYKRIYRVD 249 (326)
T ss_pred ccceEEEEEEE
Confidence 45667777664
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.73 E-value=79 Score=29.15 Aligned_cols=95 Identities=15% Similarity=0.292 Sum_probs=58.7
Q ss_pred CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc------CCCcEEEEeCCCCCCCCCCCCceEecc----
Q 010997 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS------ADNSVRMFDRRNLTSNGVGSPINKFEG---- 370 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs------~dg~i~iwd~~~~~~~~~~~~~~~~~~---- 370 (496)
..|++||....+.. ..-.+-.+.|+.+.|.. +.++++.|. ....+..||+.+ .....+.+
T Consensus 16 ~~lC~yd~~~~qW~--~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~-------~~w~~~~~~~s~ 85 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS--SPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKN-------QTWSSLGGGSSN 85 (281)
T ss_pred CEEEEEECCCCEee--cCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCC-------CeeeecCCcccc
Confidence 46999998877632 22223567899999986 667777765 456788999887 23333333
Q ss_pred -CCCCEEEEEEcC-CCCCEEEEEe-C--CCcEEEEECCCC
Q 010997 371 -HSAAVLCVQWSP-DKSSVFGSSA-E--DGLLNIWDYEKV 405 (496)
Q Consensus 371 -h~~~i~~l~~sp-~~~~llas~~-~--dg~i~iwd~~~~ 405 (496)
-.++|..+.+.. ++..++++|. . +..|..||=...
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 246788887753 3333554444 2 334666765543
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=71.70 E-value=10 Score=38.94 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997 323 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 323 ~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~ 402 (496)
...++++.-+| .++-++.++.||.|++|+..... . ..+-....+-..+.|...| + +++..|+++.-|.-
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~------q-ski~~~~~p~~nlv~tnhg--l-~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRR------Q-SKICEEAKPKENLVFTNHG--L-VTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeecccc------h-hhhhhhcCCccceeeeccc--e-EEEeccchhheeec
Confidence 34567888889 89999999999999999987522 1 1121223344456676665 3 46666888888865
Q ss_pred CC
Q 010997 403 EK 404 (496)
Q Consensus 403 ~~ 404 (496)
..
T Consensus 83 dg 84 (1636)
T KOG3616|consen 83 DG 84 (1636)
T ss_pred cC
Confidence 43
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=71.08 E-value=6.3 Score=40.53 Aligned_cols=79 Identities=8% Similarity=0.185 Sum_probs=41.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCC---Cccc--cCCCC----CCCCceE--E--ecCCCCcceeeeecC----CCCceEEe
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQP---NRHA--VLGAT----NSRPDLI--L--TGHQDNAEFALAMCP----TEPYVLSG 214 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~---~~~~--~~~~~----~~~~~~~--l--~~h~~~~v~~l~~~p----~~~~l~sg 214 (496)
++..++.+..||.+......... .... ..... ....... . ..-....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 55678888899999888877622 1100 00000 0000000 0 011112344556665 56789999
Q ss_pred cCCCcEEEEecCCccc
Q 010997 215 GKDKSVVLWSIQDHIT 230 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~ 230 (496)
+.|+++|+||+.++.+
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999998876
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=71.00 E-value=1.2e+02 Score=30.31 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=40.2
Q ss_pred eeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceee----e-ccCCCCeEEEEecC
Q 010997 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV----E-KAHDADLHCVDWNP 333 (496)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~-~~~~~~v~~i~~sp 333 (496)
..+...-...+.|+|.|++ .+|++--..|.|++++........... . .........|+++|
T Consensus 23 ~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred EEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 3444555678899999998 667666556999999865543211111 1 11357789999998
No 478
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.79 E-value=16 Score=37.58 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=36.7
Q ss_pred ceEEEEcCCCeEEEEEccC---CCccceee-e--------------------ccCCCCeEEEEecC---CCCcEEEEEcC
Q 010997 292 QEFCSVGDDSCLILWDARV---GTSPVIKV-E--------------------KAHDADLHCVDWNP---LDDNLILTGSA 344 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~---~~~~~~~~-~--------------------~~~~~~v~~i~~sp---~~~~~l~sgs~ 344 (496)
..|+.+..||.+....... ........ + ......+..+++++ .+..++++-+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 5677788888888887764 11000000 0 00123344455544 25688999999
Q ss_pred CCcEEEEeCCC
Q 010997 345 DNSVRMFDRRN 355 (496)
Q Consensus 345 dg~i~iwd~~~ 355 (496)
|+.+|+||+.+
T Consensus 239 D~~LRiW~l~t 249 (547)
T PF11715_consen 239 DHTLRIWSLET 249 (547)
T ss_dssp TSEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 99999999998
No 479
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=69.14 E-value=17 Score=37.99 Aligned_cols=135 Identities=11% Similarity=0.167 Sum_probs=80.3
Q ss_pred eEEEEcCCCeEEEEEccCCCccc--eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 293 EFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
.+..|+.++.|.|+.-..+..+. ..........+.++.+++ .-+..|.-||++-.+-.. +.....+.+-..+..
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~ra-p~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRA-PSGSWDGEPNISIPT 624 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc---cccccCccCCccccccCC-CCCCCCCCCcccccc
Confidence 47788899999999766332111 112223345667777765 335556667776665322 111111223333344
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
-..+|.+.++..+ ++ -++.+|.|.|+...+... ..-...+..|...|+.+....++-++..
T Consensus 625 g~lPvrsla~~ed---~~-was~gG~V~vi~~tt~~~------------~~~leahqee~~~Vthm~~~~~gVwvaf 685 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FV-WASEGGCVHVIPSTTFIR------------SWDLEAHQEEAHSVTHMLYLDNGVWVAF 685 (925)
T ss_pred CCccccchhhhhc---ee-eeecCCceEEEechhccc------------cchhHHHHhhcceEEEEEeeCCceEEEE
Confidence 4567888888766 33 566799999999987522 2333445667778999988876655443
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=68.44 E-value=1e+02 Score=28.77 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=41.3
Q ss_pred cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 337 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.+|+.|+.+| +.+.|+.... ....+.+ +...|+++...+....+++-++....++++++...
T Consensus 14 ~~lL~GTe~G-ly~~~~~~~~----~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 14 KWLLVGTEEG-LYVLNISDQP----GTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred cEEEEEeCCc-eEEEEcccCC----CCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 5899999999 5555555311 1222222 46689999999988755555554555999999654
No 481
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=67.49 E-value=1.9e+02 Score=31.46 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=63.7
Q ss_pred CCceeEEEEccC--CCc---eEEEEcCCCeEEEEEccCCCccceeeeccC---CCCeEEEEecCCCCcEEEEEcCCCcEE
Q 010997 278 EDTVEDVTFCPS--SAQ---EFCSVGDDSCLILWDARVGTSPVIKVEKAH---DADLHCVDWNPLDDNLILTGSADNSVR 349 (496)
Q Consensus 278 ~~~v~~l~~~~~--~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~i~~sp~~~~~l~sgs~dg~i~ 349 (496)
...|.|+.++|- +++ +++.|..+..+.+.-.-............- ...|.-..+-- +..+|.++..||.+.
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALL 608 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEE
Confidence 467889999875 444 788887776655543322221111111111 22333444444 578999999999988
Q ss_pred EEeCCCCCCCCCCCCceE--eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 350 MFDRRNLTSNGVGSPINK--FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 350 iwd~~~~~~~~~~~~~~~--~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.|-+.... +..-.. ..--..++.--.|+..++.-+ -+..|+-..+|.-+.
T Consensus 609 ~fv~d~~t----g~lsd~Kk~~lGt~P~~Lr~f~sk~~t~v-fa~sdrP~viY~~n~ 660 (1096)
T KOG1897|consen 609 YFVLDINT----GQLSDRKKVTLGTQPISLRTFSSKSRTAV-FALSDRPTVIYSSNG 660 (1096)
T ss_pred EEEEEccc----ceEccccccccCCCCcEEEEEeeCCceEE-EEeCCCCEEEEecCC
Confidence 77665422 111111 111234555555655544322 233366666776554
No 482
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=67.39 E-value=1e+02 Score=28.36 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=102.8
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.+..+.-.+-+..++++. +++..+..+.-++|.|+.+..+. ...-.-..+ -++-.|.-.|++..
T Consensus 79 l~~~i~~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP-----------~~~~~lnt~--gyaygv~vsGn~aY 142 (370)
T COG5276 79 LLSVINARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSP-----------TLIGFLNTD--GYAYGVYVSGNYAY 142 (370)
T ss_pred eEEEEehhhhhheeEecc---cEEEEEcCCCceEEEeccCCCCc-----------ceeccccCC--ceEEEEEecCCEEE
Confidence 344555667788888854 46666667778999999987422 111111121 13444555688888
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
.+..|.-+.+.|+.+..... ....+.........++.+ | +
T Consensus 143 VadlddgfLivdvsdpssP~-------------------------------------lagrya~~~~d~~~v~IS--G-n 182 (370)
T COG5276 143 VADLDDGFLIVDVSDPSSPQ-------------------------------------LAGRYALPGGDTHDVAIS--G-N 182 (370)
T ss_pred EeeccCcEEEEECCCCCCce-------------------------------------eeeeeccCCCCceeEEEe--c-C
Confidence 88867777788987543211 112222233333566665 3 4
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
+-..+..|+-+.|-|+.....|...........+.++..++ +..+++.. +--+.+-|...++
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-nr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-NRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-CeeEEEEc--ccceEEEecCCCC
Confidence 56666688899999999988776655444555888888887 55555544 3347777877643
No 483
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.12 E-value=18 Score=19.79 Aligned_cols=26 Identities=8% Similarity=0.325 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997 324 ADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 324 ~~v~~i~~sp~~~~~l~sgs~dg~i~iwd 352 (496)
..|.+|+..+ .+++.+.+-+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3577888754 6899999999999973
No 484
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=66.25 E-value=1.3e+02 Score=29.18 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=14.2
Q ss_pred CceEEecCCCcEEEEecCCc
Q 010997 209 PYVLSGGKDKSVVLWSIQDH 228 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~ 228 (496)
+.+..-+.-+.|-+|+..+.
T Consensus 236 ~~l~~~s~~~~Igvw~~~t~ 255 (465)
T KOG2714|consen 236 TQLVALSSVGKIGVWHAVTQ 255 (465)
T ss_pred hhhhhccccccccccchhhh
Confidence 34555566788999998765
No 485
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=64.64 E-value=2.1e+02 Score=30.94 Aligned_cols=237 Identities=12% Similarity=0.102 Sum_probs=119.3
Q ss_pred EEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEec---C---CCCcEEEEEeCC
Q 010997 89 LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIREL---P---QNTKIVATHTDS 162 (496)
Q Consensus 89 ~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---p---~~~~~lat~~~d 162 (496)
+...++|+..+.|.+..+....-......... .....-.+.....-.+.-..+|..|+|. . ....+|++-..
T Consensus 29 i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~- 106 (765)
T PF10214_consen 29 ILAFASGESGSVLRLSRLDEEEWSWGNNDDAS-LRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTE- 106 (765)
T ss_pred EEEEecCCCCCeeEEEEecccccccccccccc-cccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEEEEcC-
Confidence 33446788888888877654221000000000 0000000111112223567789999988 2 12346666544
Q ss_pred CcEEEEeCCCCCC---ccccCCCCCCCCceEEecCC--CCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCc
Q 010997 163 PDVLIWDVEAQPN---RHAVLGATNSRPDLILTGHQ--DNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDP 236 (496)
Q Consensus 163 g~i~iwd~~~~~~---~~~~~~~~~~~~~~~l~~h~--~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 236 (496)
..+.|+...-... .......-...++..+..+. +.+.-.++|+|. ...||.....|.-.||++...........
T Consensus 107 ~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~ 186 (765)
T PF10214_consen 107 TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNL 186 (765)
T ss_pred CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcce
Confidence 4778887333221 00000111224444554322 224568899986 45899999999999999932111100000
Q ss_pred cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccce
Q 010997 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 316 (496)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 316 (496)
.. . ....+.+ ..+. ...+.-..+.|.++. ..|+.++. ..+.++|+.+......
T Consensus 187 ~~--~------------~~~~gsi-~~d~----------~e~s~w~rI~W~~~~-~~lLv~~r-~~l~~~d~~~~~~~~~ 239 (765)
T PF10214_consen 187 RL--S------------RNISGSI-IFDP----------EELSNWKRILWVSDS-NRLLVCNR-SKLMLIDFESNWQTEY 239 (765)
T ss_pred ee--c------------cCCCccc-cCCC----------cccCcceeeEecCCC-CEEEEEcC-CceEEEECCCCCccch
Confidence 00 0 0000000 0000 011455678898776 45555543 6789999998763221
Q ss_pred eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 317 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
.........|..+.-+|.+..+++.-+ ...|...|+..
T Consensus 240 l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 240 LVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred hccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 222345578888888884333333332 25788888876
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=64.35 E-value=53 Score=32.43 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 324 ~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
..|.+++..+ ..+.+++.+.+|.|.+||+..
T Consensus 190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999 779999999999999999985
No 487
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=62.09 E-value=53 Score=24.14 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=25.7
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 342 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg 342 (496)
..+|.+..||..+++ ...+...-.-.+.|++++ ++..++.+
T Consensus 34 ~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~-d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSP-DESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTE---EEEEEEEESSEEEEEE-T-TSSEEEEE
T ss_pred CCCcCEEEEECCCCe---EEEehhCCCccCeEEEcC-CCCEEEEE
Confidence 446889999998877 222223345678999999 77765554
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=60.70 E-value=1.2e+02 Score=28.47 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=14.4
Q ss_pred CCcEEEEEeCC-----CcEEEEeCCCC
Q 010997 152 NTKIVATHTDS-----PDVLIWDVEAQ 173 (496)
Q Consensus 152 ~~~~lat~~~d-----g~i~iwd~~~~ 173 (496)
++++.+.|+.. ..+..||+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55677777642 35778887765
No 489
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=59.47 E-value=1.5e+02 Score=27.56 Aligned_cols=213 Identities=11% Similarity=0.140 Sum_probs=109.2
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec----CCCCcceeeeecCCCC---------
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG----HQDNAEFALAMCPTEP--------- 209 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~----h~~~~v~~l~~~p~~~--------- 209 (496)
-+-|+++| .+.+-++....+...+||......... ......++.. +.....+.+.|+....
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~-----~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLV-----QDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCC-----ccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 46789999 566777777788999999873311100 0012223321 1112356777764332
Q ss_pred ---ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCce-eEE
Q 010997 210 ---YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTV-EDV 284 (496)
Q Consensus 210 ---~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v-~~l 284 (496)
.++.++.||+|.-|...-....... ....+. +..+.| ..+
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~-----------------------------------~~~~~d~s~~gavYkGL 143 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTR-----------------------------------AEIVVDASQQGNVYKGL 143 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccc-----------------------------------cEEEEccCCCcceeeee
Confidence 3677888999999985322110000 001111 011222 234
Q ss_pred EEcc--CCCceEEEEcCCCeEEEEEccCCCccceeee-----ccCCCC-----------eEEEEecCCCCcEEEEEcCCC
Q 010997 285 TFCP--SSAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDAD-----------LHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 285 ~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~-----------v~~i~~sp~~~~~l~sgs~dg 346 (496)
++.. .+..+.++=-..++|-+||-.-......-.+ ...-.+ |+-..-.+ +...=+.|..-|
T Consensus 144 Ai~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G 222 (336)
T TIGR03118 144 AVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLG 222 (336)
T ss_pred EEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcc
Confidence 4432 2333445545678899998643321000000 000011 11111122 222223344557
Q ss_pred cEEEEeCCCCCCCCCCCCceEec--cCCCCEEEEEEcC------CCCCEEEEEeCCCcEEEEECCCC
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSP------DKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~--~h~~~i~~l~~sp------~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.|-+||+. +..++.+. +.-...+.|+..| .+. ||+---.||+|..||..+.
T Consensus 223 ~VdvFd~~-------G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 223 YVNVFTLN-------GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred eEEEEcCC-------CcEEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCC
Confidence 89999988 57777773 2334556777766 234 6655555999999998864
No 490
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=58.99 E-value=1.8e+02 Score=28.14 Aligned_cols=109 Identities=11% Similarity=0.053 Sum_probs=64.6
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeec--cCCCCeEEEEec--CC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce--
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWN--PL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-- 366 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~s--p~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-- 366 (496)
+.-+.....+.+|...+++ ...++. .....+.+|.|- |. +..+.-++-.++.++++-... .... ...+.
T Consensus 222 v~d~lyg~~lhvy~w~~~~--~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~-~tws-~~~visv 297 (476)
T KOG0918|consen 222 VEDGLYGSHLHVYQWSPGE--LKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSD-DTWS-AEVVISV 297 (476)
T ss_pred hhccceeeeeEEEecCCcc--ceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccc-cccc-eeEEEec
Confidence 4444445678888888776 333332 223445566663 31 233444555566777765544 1100 01111
Q ss_pred --------EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010997 367 --------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (496)
Q Consensus 367 --------~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~ 406 (496)
......+-|+.+-.|-|.++|.+++---|-|+-||+....
T Consensus 298 p~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 298 PPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred CccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCC
Confidence 1122345689999999999988888889999999998753
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=55.87 E-value=1.8e+02 Score=27.34 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=33.1
Q ss_pred ceEEEEcC-----CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC----cEEEEeCCC
Q 010997 292 QEFCSVGD-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRN 355 (496)
Q Consensus 292 ~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg----~i~iwd~~~ 355 (496)
.+++.|+. ...+..||+.+.+...+..+.. .......+..- ++.+.+.|+.++ .+..||+.+
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCC
Confidence 56666664 2468889988766322221111 11111111122 567788887764 356788876
No 492
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=53.96 E-value=2.8e+02 Score=29.03 Aligned_cols=30 Identities=3% Similarity=0.141 Sum_probs=26.7
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQD 227 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~ 227 (496)
.|-++.+.++++.++..-.+|.|.+||...
T Consensus 131 kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~ 160 (670)
T PF10395_consen 131 KVVGIKFSSDGKIIYVVLENGSIQIYDFSE 160 (670)
T ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence 577999999999999999999999999943
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=53.08 E-value=42 Score=35.12 Aligned_cols=95 Identities=15% Similarity=0.378 Sum_probs=52.2
Q ss_pred EEEEccCCCceEEEEcCCC-----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 283 DVTFCPSSAQEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 283 ~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
.++|-|+| ..++|-+.|| .|+.+....-+..-.....+-...+..++|+- ....++.+ ..+.|.+|-..+.
T Consensus 251 ~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav~-~~n~~~lwttkNy- 326 (1243)
T COG5290 251 QLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAVA-EGNLLKLWTTKNY- 326 (1243)
T ss_pred ccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHHh-hcceEEEEEccce-
Confidence 47899999 6788876554 34444322111000101123344566778876 44455444 4567999987762
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcCCCCC
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSS 386 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~ 386 (496)
.-.....-.-..+.-+.|+|...+
T Consensus 327 -----hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -----HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -----EEEEEEeecCCCcceeeeccccCc
Confidence 222222223445677888886554
No 494
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=51.93 E-value=2.3e+02 Score=27.40 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=9.6
Q ss_pred CeEEEEEccCCCc
Q 010997 301 SCLILWDARVGTS 313 (496)
Q Consensus 301 g~i~iwd~~~~~~ 313 (496)
..+.+||..+...
T Consensus 189 ~~v~~YD~~t~~W 201 (376)
T PRK14131 189 KEVLSYDPSTNQW 201 (376)
T ss_pred ceEEEEECCCCee
Confidence 3588999887663
No 495
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=51.33 E-value=2.9e+02 Score=28.32 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=19.8
Q ss_pred CCceEEecCCCcEEEEecCCcccccc
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSA 233 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~ 233 (496)
+..++.++.|+.|.-.|..+++....
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 34577788899999999988876543
No 496
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.23 E-value=3.6e+02 Score=29.13 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEEecC----------CCc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGK----------DKS 219 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~sg~~----------Dg~ 219 (496)
.+..|+.++.|+.+.-.|..++.................+..... .-+.+.-.|- +..++.|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~-g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPP-GYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCC-cccccccCCEEECCEEEEEecccccccccCCCcE
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
|+-+|.++++................. ....-..+....|......+..-+.--...-.+..+.... ..-.....
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~----~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~-r~~~~n~y 412 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPA----PGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGD-RTPADEKY 412 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCC----CCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCc-cccCcccc
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEE---------EEecCCCCc---EEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHC---------VDWNPLDDN---LILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---------i~~sp~~~~---~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
.+.|.-.|.++++ ..-.++.....+.. +.+...++. .++.++.+|.+.++|.++ ++++..
T Consensus 413 ~~slvALD~~TGk--~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~t------G~~l~~ 484 (764)
T TIGR03074 413 SSSLVALDATTGK--ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRT------GEPIVP 484 (764)
T ss_pred cceEEEEeCCCCc--eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCC------CCEEee
Q ss_pred ec
Q 010997 368 FE 369 (496)
Q Consensus 368 ~~ 369 (496)
.+
T Consensus 485 ~~ 486 (764)
T TIGR03074 485 VE 486 (764)
T ss_pred ce
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=48.33 E-value=1.7e+02 Score=31.15 Aligned_cols=120 Identities=8% Similarity=0.059 Sum_probs=66.5
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC---ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~ 354 (496)
...+.++.+++.. +..|.-||++-.|--.... .+..........+|...++.. -++-|+.+|.|.++...
T Consensus 581 ~~~v~~l~~ss~S---lgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~e----d~~was~gG~V~vi~~t 653 (925)
T KOG3522|consen 581 HESVKLLLFSSGS---LGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQE----DFVWASEGGCVHVIPST 653 (925)
T ss_pred hhhhhhhhccccc---cccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhh----ceeeeecCCceEEEech
Confidence 3456666666543 5666666766655221111 001111223445677777653 25567789999999988
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCccc
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 409 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~ 409 (496)
+.... ........|...|+++....++- +++-.....++.++..+....+
T Consensus 654 t~~~~---~~leahqee~~~Vthm~~~~~gV--wvafasG~~~rlfhtetl~hlq 703 (925)
T KOG3522|consen 654 TFIRS---WDLEAHQEEAHSVTHMLYLDNGV--WVAFASGDEERLFHTETLWHLQ 703 (925)
T ss_pred hcccc---chhHHHHhhcceEEEEEeeCCce--EEEEcCCCEEEEecccccCCcc
Confidence 73211 11222234667899999987774 4444434467777666544333
No 498
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=48.25 E-value=2.7e+02 Score=27.04 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=74.2
Q ss_pred CceeEEEEc--c-CCCceEEEEcCCCeEEEEEccCCCc-----cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997 279 DTVEDVTFC--P-SSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 350 (496)
Q Consensus 279 ~~v~~l~~~--~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i 350 (496)
..+..+|+. + ++..+++....+|.+..|-+..... ..++.+ .-.+.+-.+.... ....|..|-.+.-|.-
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPEGCVVDD-ETGRLYVGEEDVGIWR 233 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EEEEEEET-TTTEEEEEETTTEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcceEEEEec-ccCCEEEecCccEEEE
Confidence 346777774 3 3444667778889998888863221 123444 2345788888887 6778888888877777
Q ss_pred EeCCCCCCCCCCCCceEecc--CCCCEEEEEEcC--CC-CCEEEEEeCCCcEEEEECCCC
Q 010997 351 FDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSP--DK-SSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~--h~~~i~~l~~sp--~~-~~llas~~~dg~i~iwd~~~~ 405 (496)
|+..-... ..+..+....+ ....|-.|++-. ++ .+||||.-.++...||+....
T Consensus 234 y~Aep~~~-~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 234 YDAEPEGG-NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EESSCCC--S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCCCCC-CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 77663221 11222333322 345677777753 33 468877777889999998753
No 499
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=48.19 E-value=45 Score=18.11 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=14.2
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIW 400 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iw 400 (496)
...++++++|. ++++-+...+|.+|
T Consensus 4 P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 45666766665 55555555555543
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=48.14 E-value=1.1e+02 Score=22.53 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=30.4
Q ss_pred EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 341 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 341 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
.+..+|.+.-||..+ +....+-.--.-.+.|++++++.++|++=..-.+|.
T Consensus 32 e~~~~GRll~ydp~t-------~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ 82 (89)
T PF03088_consen 32 EGRPTGRLLRYDPST-------KETTVLLDGLYFPNGVALSPDESFVLVAETGRYRIL 82 (89)
T ss_dssp HT---EEEEEEETTT-------TEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cCCCCcCEEEEECCC-------CeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEE
Confidence 345678888899887 333333323345789999999998776555444443
Done!