Query 010997
Match_columns 496
No_of_seqs 698 out of 3888
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xyi_A Probable histone-bindin 100.0 2E-57 6.7E-62 449.4 32.5 390 34-475 15-416 (430)
2 1vyh_C Platelet-activating fac 100.0 5.5E-44 1.9E-48 350.6 31.5 270 134-496 102-390 (410)
3 2ynn_A Coatomer subunit beta'; 100.0 1.6E-43 5.4E-48 333.1 31.1 270 135-496 8-280 (304)
4 3ow8_A WD repeat-containing pr 100.0 2E-43 6.9E-48 334.8 27.5 270 136-496 28-300 (321)
5 4gqb_B Methylosome protein 50; 100.0 1.6E-42 5.6E-47 331.1 33.8 256 134-469 76-331 (344)
6 1got_B GT-beta; complex (GTP-b 100.0 3.1E-42 1E-46 329.7 32.4 275 133-496 48-322 (340)
7 3ow8_A WD repeat-containing pr 100.0 1.7E-40 5.9E-45 314.6 37.2 287 66-468 34-320 (321)
8 2pbi_B Guanine nucleotide-bind 100.0 3.7E-41 1.3E-45 323.8 32.7 278 134-496 58-336 (354)
9 1vyh_C Platelet-activating fac 100.0 1.4E-41 4.8E-46 333.5 30.0 247 135-468 145-410 (410)
10 4gqb_B Methylosome protein 50; 100.0 5.7E-42 2E-46 327.3 26.4 280 138-496 28-309 (344)
11 3iz6_a 40S ribosomal protein R 100.0 1.1E-41 3.8E-46 330.9 27.8 279 134-496 60-354 (380)
12 4g56_B MGC81050 protein; prote 100.0 1.9E-41 6.4E-46 326.2 28.0 275 137-496 39-321 (357)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.7E-41 1.3E-45 322.8 29.9 299 134-496 9-313 (345)
14 4g56_B MGC81050 protein; prote 100.0 6.4E-40 2.2E-44 315.5 34.4 256 134-469 88-343 (357)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.5E-40 1.5E-44 315.3 31.2 290 95-469 34-335 (345)
16 2pm7_B Protein transport prote 100.0 1.3E-39 4.5E-44 305.2 33.7 263 135-468 4-284 (297)
17 4ery_A WD repeat-containing pr 100.0 1.9E-39 6.4E-44 306.6 34.2 271 133-496 16-289 (312)
18 1erj_A Transcriptional repress 100.0 7.9E-40 2.7E-44 319.3 29.9 283 132-496 56-362 (393)
19 3frx_A Guanine nucleotide-bind 100.0 2.6E-39 8.8E-44 306.5 31.3 279 134-496 11-296 (319)
20 1got_B GT-beta; complex (GTP-b 100.0 7E-39 2.4E-43 306.4 34.2 248 134-466 91-340 (340)
21 2ynn_A Coatomer subunit beta'; 100.0 6.2E-38 2.1E-42 294.9 37.1 285 66-468 15-301 (304)
22 2hes_X YDR267CP; beta-propelle 100.0 6.2E-39 2.1E-43 305.4 30.2 290 134-496 8-305 (330)
23 2pbi_B Guanine nucleotide-bind 100.0 1.3E-37 4.5E-42 299.1 38.1 270 95-466 82-354 (354)
24 1nr0_A Actin interacting prote 100.0 4.8E-39 1.6E-43 331.8 29.0 314 135-496 185-591 (611)
25 1nr0_A Actin interacting prote 100.0 8.4E-39 2.9E-43 330.0 30.3 284 135-496 54-377 (611)
26 2xzm_R RACK1; ribosome, transl 100.0 1.4E-38 4.7E-43 304.7 29.0 283 134-496 15-319 (343)
27 3iz6_a 40S ribosomal protein R 100.0 1.2E-38 4E-43 309.7 28.8 280 95-469 84-375 (380)
28 2hes_X YDR267CP; beta-propelle 100.0 4E-38 1.4E-42 299.8 28.9 264 138-468 56-327 (330)
29 3frx_A Guanine nucleotide-bind 100.0 3.2E-37 1.1E-41 292.0 32.2 268 95-468 36-316 (319)
30 2pm9_A Protein WEB1, protein t 100.0 5.8E-38 2E-42 308.4 27.9 286 96-471 42-339 (416)
31 3bg1_A Protein SEC13 homolog; 100.0 1.4E-38 4.9E-43 300.9 22.5 260 136-468 9-292 (316)
32 2ymu_A WD-40 repeat protein; u 100.0 4.3E-37 1.5E-41 315.5 34.5 262 135-496 298-559 (577)
33 2xzm_R RACK1; ribosome, transl 100.0 1.5E-36 5E-41 290.7 34.9 284 95-468 45-339 (343)
34 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-37 1.8E-41 307.7 32.6 329 63-468 132-516 (524)
35 4aow_A Guanine nucleotide-bind 100.0 3.6E-37 1.2E-41 294.1 29.0 298 135-468 33-336 (340)
36 4e54_B DNA damage-binding prot 100.0 2.1E-37 7.3E-42 306.4 26.2 284 135-496 114-410 (435)
37 4ery_A WD repeat-containing pr 100.0 7.8E-36 2.7E-40 281.7 35.7 250 135-468 60-311 (312)
38 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-37 4E-42 312.4 23.7 291 134-496 127-493 (524)
39 1r5m_A SIR4-interacting protei 100.0 2.9E-36 1E-40 296.6 30.6 277 138-496 106-404 (425)
40 1erj_A Transcriptional repress 100.0 5E-36 1.7E-40 292.5 31.5 250 138-468 121-388 (393)
41 3i2n_A WD repeat-containing pr 100.0 1.6E-35 5.6E-40 284.5 34.5 307 66-469 20-353 (357)
42 1gxr_A ESG1, transducin-like e 100.0 1.6E-35 5.4E-40 282.1 32.3 272 132-496 43-316 (337)
43 3dm0_A Maltose-binding peripla 100.0 6.6E-36 2.2E-40 313.3 31.8 253 135-469 377-632 (694)
44 1sq9_A Antiviral protein SKI8; 100.0 1.4E-36 4.9E-41 296.6 24.4 277 136-496 12-364 (397)
45 3zwl_B Eukaryotic translation 100.0 2.4E-35 8.1E-40 284.5 31.7 283 129-496 21-325 (369)
46 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-35 4E-40 280.1 28.2 265 133-496 11-276 (313)
47 4gga_A P55CDC, cell division c 100.0 7.5E-35 2.6E-39 286.8 35.2 251 133-469 140-395 (420)
48 4aez_A CDC20, WD repeat-contai 100.0 1E-34 3.6E-39 284.0 35.2 266 136-493 130-399 (401)
49 1k8k_C P40, ARP2/3 complex 41 100.0 7.2E-36 2.5E-40 288.8 26.6 255 138-469 6-274 (372)
50 2ymu_A WD-40 repeat protein; u 100.0 2.4E-35 8.1E-40 302.6 31.3 263 134-496 256-518 (577)
51 3jrp_A Fusion protein of prote 100.0 2.8E-35 9.5E-40 285.2 29.9 262 135-468 6-286 (379)
52 3k26_A Polycomb protein EED; W 100.0 4.8E-36 1.6E-40 289.1 24.1 280 137-496 15-345 (366)
53 1sq9_A Antiviral protein SKI8; 100.0 1.4E-34 4.8E-39 282.5 33.7 296 66-468 18-394 (397)
54 4h5i_A Guanine nucleotide-exch 100.0 5.9E-35 2E-39 281.6 30.3 329 60-485 10-361 (365)
55 3dm0_A Maltose-binding peripla 100.0 7.6E-35 2.6E-39 305.2 33.5 265 133-468 423-692 (694)
56 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-35 1.7E-39 279.5 29.4 280 136-469 7-337 (351)
57 3k26_A Polycomb protein EED; W 100.0 1.8E-35 6.3E-40 285.0 26.4 301 66-468 20-365 (366)
58 3ei3_B DNA damage-binding prot 100.0 1.3E-34 4.4E-39 281.6 31.9 285 133-496 66-362 (383)
59 3i2n_A WD repeat-containing pr 100.0 2.5E-35 8.5E-40 283.2 25.7 284 133-496 11-331 (357)
60 3dw8_B Serine/threonine-protei 100.0 1.4E-35 4.6E-40 294.4 24.3 286 137-469 25-373 (447)
61 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-35 9.1E-40 314.6 28.3 271 134-496 7-280 (814)
62 2pm9_A Protein WEB1, protein t 100.0 5.5E-36 1.9E-40 294.3 20.6 278 139-496 11-315 (416)
63 1gxr_A ESG1, transducin-like e 100.0 2E-33 6.7E-38 267.6 36.5 246 134-468 91-336 (337)
64 2pm7_B Protein transport prote 100.0 2E-34 6.9E-39 270.0 28.3 245 189-496 3-264 (297)
65 4e54_B DNA damage-binding prot 100.0 5.8E-35 2E-39 288.9 25.7 253 133-469 157-430 (435)
66 1r5m_A SIR4-interacting protei 100.0 9.2E-35 3.1E-39 285.9 27.0 275 131-496 36-340 (425)
67 2aq5_A Coronin-1A; WD40 repeat 100.0 4.7E-35 1.6E-39 286.6 24.7 279 140-496 34-323 (402)
68 1k8k_C P40, ARP2/3 complex 41 100.0 6.9E-34 2.4E-38 274.9 32.5 306 66-468 10-360 (372)
69 3dwl_C Actin-related protein 2 100.0 1.3E-34 4.4E-39 280.8 26.9 248 66-404 13-281 (377)
70 3zwl_B Eukaryotic translation 100.0 2E-33 7E-38 270.9 34.8 257 135-469 69-346 (369)
71 3dwl_C Actin-related protein 2 100.0 6.2E-36 2.1E-40 290.1 17.0 258 138-468 9-280 (377)
72 4aez_A CDC20, WD repeat-contai 100.0 2E-34 6.9E-39 282.0 27.6 273 133-496 84-359 (401)
73 1yfq_A Cell cycle arrest prote 100.0 9.1E-35 3.1E-39 277.8 24.1 268 138-493 9-301 (342)
74 3ei3_B DNA damage-binding prot 100.0 1.1E-33 3.7E-38 275.0 30.9 245 136-468 114-381 (383)
75 3vl1_A 26S proteasome regulato 100.0 1.6E-34 5.3E-39 284.4 24.9 267 143-496 100-395 (420)
76 3gre_A Serine/threonine-protei 100.0 1.7E-34 5.9E-39 285.8 25.1 272 137-469 60-359 (437)
77 4a11_B DNA excision repair pro 100.0 6.6E-33 2.3E-37 271.2 35.9 277 135-469 38-365 (408)
78 3v7d_B Cell division control p 100.0 5.8E-34 2E-38 284.3 27.7 284 135-496 157-443 (464)
79 3vl1_A 26S proteasome regulato 100.0 9.9E-35 3.4E-39 285.8 20.9 262 142-495 58-344 (420)
80 4gga_A P55CDC, cell division c 100.0 3E-33 1E-37 275.4 31.4 264 142-496 107-374 (420)
81 4ggc_A P55CDC, cell division c 100.0 3.5E-32 1.2E-36 257.0 36.4 251 133-469 60-315 (318)
82 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-33 4.3E-38 315.2 30.7 327 132-496 607-1054(1249)
83 3jro_A Fusion protein of prote 100.0 5.3E-34 1.8E-38 300.7 24.7 262 136-469 5-285 (753)
84 3mmy_A MRNA export factor; mRN 100.0 1.3E-33 4.4E-38 272.2 25.3 275 132-496 31-325 (368)
85 2oaj_A Protein SNI1; WD40 repe 100.0 6.1E-33 2.1E-37 296.8 32.2 329 135-495 53-631 (902)
86 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-32 5.8E-37 268.4 32.4 257 136-469 77-342 (402)
87 3odt_A Protein DOA1; ubiquitin 100.0 3.5E-32 1.2E-36 256.2 32.3 261 96-470 36-297 (313)
88 1p22_A F-BOX/WD-repeat protein 100.0 6E-33 2E-37 274.5 27.5 278 136-469 129-414 (435)
89 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.5E-33 2.2E-37 275.2 27.2 292 134-496 112-417 (445)
90 4ggc_A P55CDC, cell division c 100.0 3.6E-32 1.2E-36 256.8 30.6 263 143-496 28-294 (318)
91 3v7d_B Cell division control p 100.0 9.4E-33 3.2E-37 275.5 27.8 245 132-469 113-381 (464)
92 3bg1_A Protein SEC13 homolog; 100.0 6.2E-34 2.1E-38 269.1 17.5 243 190-496 8-272 (316)
93 3gre_A Serine/threonine-protei 100.0 5E-33 1.7E-37 275.2 24.3 327 46-466 47-437 (437)
94 1pgu_A Actin interacting prote 100.0 1.2E-32 4.3E-37 284.3 28.2 304 138-496 16-348 (615)
95 1pgu_A Actin interacting prote 100.0 6E-33 2.1E-37 286.7 24.5 305 135-496 198-594 (615)
96 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-31 4E-36 286.5 33.4 285 66-469 15-302 (814)
97 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-33 7.7E-38 313.1 19.2 310 137-496 837-1188(1249)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.1E-32 2.1E-36 268.5 27.3 291 141-496 5-364 (450)
99 2xyi_A Probable histone-bindin 100.0 1.4E-31 4.7E-36 264.2 28.0 253 189-496 122-388 (430)
100 3dw8_B Serine/threonine-protei 100.0 3.7E-31 1.3E-35 262.4 30.5 328 66-468 30-445 (447)
101 3lrv_A PRE-mRNA-splicing facto 100.0 7.3E-32 2.5E-36 258.0 24.1 238 152-469 47-292 (343)
102 1yfq_A Cell cycle arrest prote 100.0 1.2E-30 4.2E-35 249.1 32.0 293 66-466 13-321 (342)
103 4h5i_A Guanine nucleotide-exch 100.0 2.1E-32 7.2E-37 263.8 19.8 283 139-496 13-322 (365)
104 3jrp_A Fusion protein of prote 100.0 3E-31 1E-35 256.8 25.3 245 187-496 3-266 (379)
105 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-31 1E-35 263.2 25.8 276 135-469 154-442 (445)
106 2oaj_A Protein SNI1; WD40 repe 100.0 5.2E-31 1.8E-35 281.9 29.5 268 132-467 9-310 (902)
107 4aow_A Guanine nucleotide-bind 100.0 4.2E-31 1.4E-35 252.0 23.3 236 186-496 29-266 (340)
108 4gq1_A NUP37; propeller, trans 100.0 1E-31 3.5E-36 261.8 18.3 252 138-468 87-388 (393)
109 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-31 6.1E-36 261.3 19.1 246 138-496 13-277 (588)
110 4a11_B DNA excision repair pro 100.0 2.6E-31 8.8E-36 259.9 19.6 278 162-496 22-344 (408)
111 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-30 6.4E-35 247.7 24.9 242 189-496 5-316 (351)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-29 5.1E-34 251.3 32.1 256 137-469 99-391 (450)
113 3mmy_A MRNA export factor; mRN 100.0 4.9E-29 1.7E-33 240.1 30.2 275 66-448 41-333 (368)
114 2j04_A TAU60, YPL007P, hypothe 100.0 4.2E-30 1.4E-34 251.6 22.5 254 138-496 50-340 (588)
115 3vu4_A KMHSV2; beta-propeller 100.0 7.5E-29 2.6E-33 238.1 29.9 290 135-468 14-335 (355)
116 4gq1_A NUP37; propeller, trans 100.0 2.1E-30 7E-35 252.6 18.1 245 200-496 93-369 (393)
117 3bws_A Protein LP49; two-domai 100.0 7.6E-29 2.6E-33 244.8 27.6 282 132-496 114-410 (433)
118 3jro_A Fusion protein of prote 100.0 5.8E-30 2E-34 269.9 20.6 243 189-496 3-264 (753)
119 2w18_A PALB2, fancn, partner a 100.0 5.1E-28 1.8E-32 222.7 27.0 260 143-468 42-356 (356)
120 1l0q_A Surface layer protein; 100.0 1.3E-27 4.6E-32 232.6 31.7 258 135-488 26-288 (391)
121 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-28 7.4E-33 233.9 24.3 243 140-468 76-332 (343)
122 1l0q_A Surface layer protein; 100.0 6E-27 2E-31 228.0 27.2 250 153-496 2-253 (391)
123 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.8E-26 6.2E-31 226.1 28.1 268 134-496 111-407 (415)
124 2w18_A PALB2, fancn, partner a 100.0 4.2E-27 1.4E-31 216.7 20.8 177 161-402 155-355 (356)
125 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-27 7.7E-32 234.5 19.2 255 193-495 131-394 (435)
126 3bws_A Protein LP49; two-domai 99.9 1.2E-25 4.1E-30 221.9 30.7 242 137-468 166-431 (433)
127 3vu4_A KMHSV2; beta-propeller 99.9 2.7E-26 9.3E-31 220.3 23.8 213 186-470 10-272 (355)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-24 4.7E-29 212.7 23.0 263 139-496 61-363 (415)
129 2ojh_A Uncharacterized protein 99.9 2.9E-23 9.8E-28 193.1 28.5 244 134-452 35-293 (297)
130 3hfq_A Uncharacterized protein 99.9 2.4E-22 8.2E-27 192.1 32.7 301 84-468 2-316 (347)
131 1nir_A Nitrite reductase; hemo 99.9 1.2E-22 4E-27 205.2 27.9 287 143-496 181-488 (543)
132 1ri6_A Putative isomerase YBHE 99.9 2.3E-21 8E-26 184.5 34.5 261 133-468 30-307 (343)
133 1nir_A Nitrite reductase; hemo 99.9 1.1E-22 3.7E-27 205.5 25.3 262 147-496 144-430 (543)
134 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-22 6.4E-27 198.3 25.5 223 140-405 36-279 (434)
135 3vgz_A Uncharacterized protein 99.9 9.8E-22 3.3E-26 188.1 28.6 265 137-496 37-323 (353)
136 3scy_A Hypothetical bacterial 99.9 8E-21 2.7E-25 182.6 33.8 325 83-495 12-360 (361)
137 3u4y_A Uncharacterized protein 99.9 5.2E-21 1.8E-25 181.4 29.3 248 138-469 38-304 (331)
138 2ojh_A Uncharacterized protein 99.9 1.9E-22 6.7E-27 187.5 18.8 255 158-496 17-281 (297)
139 2ecf_A Dipeptidyl peptidase IV 99.9 4.1E-22 1.4E-26 210.4 22.8 263 140-496 36-389 (741)
140 2ecf_A Dipeptidyl peptidase IV 99.9 8E-22 2.7E-26 208.2 22.0 272 141-496 109-434 (741)
141 3u4y_A Uncharacterized protein 99.9 6E-21 2E-25 181.0 25.1 239 147-469 4-252 (331)
142 1ri6_A Putative isomerase YBHE 99.9 4.6E-21 1.6E-25 182.5 23.4 269 152-496 4-286 (343)
143 2oit_A Nucleoporin 214KDA; NH2 99.9 1.8E-21 6.1E-26 191.3 18.8 224 198-469 38-278 (434)
144 1xfd_A DIP, dipeptidyl aminope 99.9 5.4E-21 1.8E-25 201.3 22.4 280 142-496 62-419 (723)
145 1xfd_A DIP, dipeptidyl aminope 99.9 2.5E-21 8.7E-26 203.7 19.7 229 142-448 18-323 (723)
146 2z3z_A Dipeptidyl aminopeptida 99.9 2.9E-20 9.9E-25 195.1 27.5 256 134-469 114-435 (706)
147 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.8E-25 198.3 21.1 280 139-496 80-410 (706)
148 3o4h_A Acylamino-acid-releasin 99.9 1.4E-20 4.8E-25 192.9 21.0 234 140-467 21-274 (582)
149 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.3E-18 4.4E-23 167.4 32.1 255 139-469 38-341 (365)
150 1k32_A Tricorn protease; prote 99.9 4.4E-20 1.5E-24 201.8 23.8 280 134-496 197-481 (1045)
151 3vgz_A Uncharacterized protein 99.8 7.8E-19 2.7E-23 167.8 28.7 238 134-451 82-334 (353)
152 1jmx_B Amine dehydrogenase; ox 99.8 9.4E-20 3.2E-24 173.9 21.2 231 146-468 5-324 (349)
153 1pby_B Quinohemoprotein amine 99.8 2.3E-19 7.9E-24 170.2 22.0 234 142-468 35-309 (337)
154 1k32_A Tricorn protease; prote 99.8 3.7E-19 1.3E-23 194.5 23.2 233 141-449 245-490 (1045)
155 3hfq_A Uncharacterized protein 99.8 1.4E-18 4.7E-23 166.0 22.7 258 162-496 15-295 (347)
156 1z68_A Fibroblast activation p 99.8 1.1E-19 3.8E-24 191.1 14.5 242 145-468 20-345 (719)
157 1z68_A Fibroblast activation p 99.8 8.2E-19 2.8E-23 184.4 20.2 280 142-496 61-419 (719)
158 1pby_B Quinohemoprotein amine 99.8 1.2E-18 4.2E-23 165.1 18.9 246 154-496 2-289 (337)
159 3pe7_A Oligogalacturonate lyas 99.8 6.6E-18 2.3E-22 163.7 19.9 255 136-468 26-328 (388)
160 3fvz_A Peptidyl-glycine alpha- 99.8 3.5E-16 1.2E-20 148.0 29.7 250 140-469 23-322 (329)
161 3scy_A Hypothetical bacterial 99.8 8E-17 2.7E-21 154.6 24.6 272 154-496 14-315 (361)
162 4a5s_A Dipeptidyl peptidase 4 99.8 1E-16 3.5E-21 168.8 25.4 250 141-468 17-352 (740)
163 3o4h_A Acylamino-acid-releasin 99.7 1.3E-16 4.4E-21 163.4 20.5 271 65-468 22-314 (582)
164 1q7f_A NHL, brain tumor CG1071 99.7 5.5E-15 1.9E-19 136.8 27.7 238 138-469 27-280 (286)
165 3azo_A Aminopeptidase; POP fam 99.7 4.5E-16 1.6E-20 161.9 21.3 261 136-492 19-341 (662)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 5.1E-16 1.8E-20 149.2 19.0 212 198-468 41-290 (365)
167 1jmx_B Amine dehydrogenase; ox 99.7 3.4E-15 1.2E-19 142.1 24.3 197 142-405 44-326 (349)
168 3pe7_A Oligogalacturonate lyas 99.7 1.2E-15 4.1E-20 147.7 19.4 242 138-468 78-381 (388)
169 2oiz_A Aromatic amine dehydrog 99.7 4.8E-15 1.6E-19 141.9 22.0 258 145-496 54-357 (361)
170 2dg1_A DRP35, lactonase; beta 99.7 1.2E-15 4.1E-20 144.6 16.4 245 141-468 6-262 (333)
171 3c5m_A Oligogalacturonate lyas 99.6 1.5E-15 5E-20 147.4 15.5 265 141-469 36-329 (396)
172 2xdw_A Prolyl endopeptidase; a 99.6 5.8E-14 2E-18 147.1 28.4 250 139-469 123-414 (710)
173 4a5s_A Dipeptidyl peptidase 4 99.6 1.4E-15 4.9E-20 160.0 16.0 211 199-468 19-293 (740)
174 1rwi_B Serine/threonine-protei 99.6 1.6E-13 5.6E-18 125.5 27.9 238 142-469 25-264 (270)
175 2dg1_A DRP35, lactonase; beta 99.6 5.9E-13 2E-17 125.9 32.6 234 136-451 40-300 (333)
176 3azo_A Aminopeptidase; POP fam 99.6 4.2E-15 1.4E-19 154.6 19.1 224 145-449 81-353 (662)
177 3fvz_A Peptidyl-glycine alpha- 99.6 1.1E-13 3.8E-18 130.8 25.4 251 198-496 25-301 (329)
178 3e5z_A Putative gluconolactona 99.6 5.2E-13 1.8E-17 124.1 29.6 231 136-450 23-276 (296)
179 3c5m_A Oligogalacturonate lyas 99.6 3.7E-14 1.3E-18 137.4 20.1 233 144-468 84-381 (396)
180 2bkl_A Prolyl endopeptidase; m 99.6 8E-14 2.7E-18 145.6 23.5 250 138-469 118-397 (695)
181 2gop_A Trilobed protease; beta 99.6 5.7E-14 1.9E-18 133.7 19.1 240 142-496 16-311 (347)
182 1q7f_A NHL, brain tumor CG1071 99.6 1.2E-12 4.2E-17 120.8 26.0 198 139-404 75-280 (286)
183 2gop_A Trilobed protease; beta 99.6 2.8E-13 9.6E-18 128.9 21.1 224 141-468 59-330 (347)
184 2z2n_A Virginiamycin B lyase; 99.5 1.9E-11 6.4E-16 113.4 29.7 242 138-468 12-254 (299)
185 2bkl_A Prolyl endopeptidase; m 99.5 5E-13 1.7E-17 139.6 20.5 226 193-496 118-372 (695)
186 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1E-11 3.4E-16 116.3 27.1 249 139-469 16-299 (314)
187 1qks_A Cytochrome CD1 nitrite 99.5 3.3E-11 1.1E-15 121.3 32.4 271 133-470 189-478 (567)
188 1qks_A Cytochrome CD1 nitrite 99.5 9.1E-12 3.1E-16 125.4 27.3 237 152-469 166-421 (567)
189 3dsm_A Uncharacterized protein 99.5 6E-12 2.1E-16 118.7 24.3 245 142-468 45-301 (328)
190 3e5z_A Putative gluconolactona 99.5 2.3E-12 7.8E-17 119.7 20.5 221 189-494 21-263 (296)
191 3no2_A Uncharacterized protein 99.5 1E-11 3.4E-16 113.8 24.3 213 152-448 4-230 (276)
192 2xdw_A Prolyl endopeptidase; a 99.5 2.8E-11 9.4E-16 126.8 28.6 210 143-405 173-415 (710)
193 2oiz_A Aromatic amine dehydrog 99.5 2E-11 6.7E-16 116.7 24.4 228 140-443 107-360 (361)
194 1xip_A Nucleoporin NUP159; bet 99.4 5E-12 1.7E-16 120.1 19.1 194 198-450 39-233 (388)
195 1xip_A Nucleoporin NUP159; bet 99.4 4.1E-12 1.4E-16 120.7 18.5 180 142-388 39-229 (388)
196 1yr2_A Prolyl oligopeptidase; 99.4 1.5E-11 5E-16 129.4 24.4 250 139-469 161-441 (741)
197 1rwi_B Serine/threonine-protei 99.4 5.1E-11 1.7E-15 108.8 23.5 200 139-405 65-265 (270)
198 2z2n_A Virginiamycin B lyase; 99.4 7.2E-10 2.5E-14 102.5 31.2 238 139-468 55-294 (299)
199 3hrp_A Uncharacterized protein 99.4 3.5E-10 1.2E-14 109.8 30.0 240 141-467 131-408 (409)
200 3g4e_A Regucalcin; six bladed 99.4 2.5E-10 8.5E-15 106.0 27.0 230 143-451 15-262 (297)
201 2qc5_A Streptogramin B lactona 99.4 1.4E-09 4.6E-14 100.7 30.9 241 139-468 18-259 (300)
202 3iuj_A Prolyl endopeptidase; h 99.3 2.5E-10 8.7E-15 118.9 25.2 248 139-468 127-404 (693)
203 2ghs_A AGR_C_1268P; regucalcin 99.3 1.4E-09 4.9E-14 102.3 27.6 231 143-451 51-292 (326)
204 2qc5_A Streptogramin B lactona 99.3 6.7E-09 2.3E-13 96.0 31.4 227 139-446 60-287 (300)
205 3dsm_A Uncharacterized protein 99.3 3.9E-10 1.3E-14 106.2 23.1 202 135-403 78-301 (328)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 4.3E-10 1.5E-14 105.0 22.8 208 139-405 69-300 (314)
207 3sjl_D Methylamine dehydrogena 99.3 3E-10 1E-14 107.5 21.3 245 145-483 82-371 (386)
208 2mad_H Methylamine dehydrogena 99.3 4E-09 1.4E-13 100.9 29.1 242 145-481 70-356 (373)
209 1yr2_A Prolyl oligopeptidase; 99.3 1.2E-10 4.1E-15 122.5 19.6 223 198-496 164-416 (741)
210 3g4e_A Regucalcin; six bladed 99.3 2.3E-10 7.8E-15 106.2 19.3 222 199-495 15-249 (297)
211 3dr2_A Exported gluconolactona 99.2 4.4E-09 1.5E-13 97.9 26.2 230 135-450 39-296 (305)
212 3no2_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 103.7 17.5 182 207-468 4-194 (276)
213 3hrp_A Uncharacterized protein 99.2 3.4E-09 1.2E-13 102.8 21.6 192 199-468 133-353 (409)
214 1mda_H Methylamine dehydrogena 99.2 8.1E-10 2.8E-14 104.7 16.5 252 145-495 69-365 (368)
215 3c75_H MADH, methylamine dehyd 99.1 4.4E-09 1.5E-13 101.3 21.4 245 145-482 122-409 (426)
216 3iuj_A Prolyl endopeptidase; h 99.1 1.1E-09 3.7E-14 114.1 16.8 201 198-468 130-358 (693)
217 2ghs_A AGR_C_1268P; regucalcin 99.1 3.6E-08 1.2E-12 92.6 24.7 196 138-395 87-294 (326)
218 2qe8_A Uncharacterized protein 99.1 7.4E-09 2.5E-13 98.1 19.5 249 141-450 17-309 (343)
219 2ece_A 462AA long hypothetical 99.1 6.2E-08 2.1E-12 92.3 24.5 234 150-449 93-399 (462)
220 2mad_H Methylamine dehydrogena 99.0 1.6E-07 5.3E-12 89.8 25.9 269 152-496 31-327 (373)
221 2hz6_A Endoplasmic reticulum t 99.0 3.8E-10 1.3E-14 108.1 7.4 183 152-405 8-193 (369)
222 3dr2_A Exported gluconolactona 99.0 2.3E-08 7.7E-13 93.0 18.2 194 198-468 46-266 (305)
223 3sjl_D Methylamine dehydrogena 98.9 2.6E-08 8.8E-13 94.3 15.7 264 148-496 40-340 (386)
224 1npe_A Nidogen, entactin; glyc 98.9 1.2E-06 4E-11 79.5 25.6 196 199-468 38-237 (267)
225 2iwa_A Glutamine cyclotransfer 98.8 1.5E-06 5E-11 77.8 23.3 208 131-405 9-238 (266)
226 2qe8_A Uncharacterized protein 98.8 1.7E-07 5.7E-12 88.7 18.0 213 198-468 18-277 (343)
227 2ece_A 462AA long hypothetical 98.8 2.2E-06 7.6E-11 81.7 24.0 169 280-469 139-352 (462)
228 1npe_A Nidogen, entactin; glyc 98.8 1.9E-05 6.4E-10 71.5 29.7 200 142-405 37-239 (267)
229 3c75_H MADH, methylamine dehyd 98.7 2.2E-07 7.4E-12 89.5 15.8 260 163-496 99-379 (426)
230 2fp8_A Strictosidine synthase; 98.7 2.7E-05 9.1E-10 72.7 28.3 251 141-468 19-312 (322)
231 2iwa_A Glutamine cyclotransfer 98.7 5.2E-06 1.8E-10 74.3 21.8 198 199-470 23-238 (266)
232 2hz6_A Endoplasmic reticulum t 98.7 1.9E-09 6.6E-14 103.1 -0.9 141 207-405 8-150 (369)
233 3nol_A Glutamine cyclotransfer 98.6 5E-06 1.7E-10 73.5 20.1 192 131-392 31-244 (262)
234 1fwx_A Nitrous oxide reductase 98.6 2.6E-06 8.9E-11 84.2 19.9 153 301-468 254-430 (595)
235 3v64_C Agrin; beta propeller, 98.6 4.1E-05 1.4E-09 72.2 27.5 198 141-404 34-234 (349)
236 3v65_B Low-density lipoprotein 98.6 2.8E-05 9.5E-10 74.5 26.0 196 143-404 79-277 (386)
237 1kb0_A Quinohemoprotein alcoho 98.6 2.2E-06 7.4E-11 88.6 19.1 187 153-369 128-354 (677)
238 1yiq_A Quinohemoprotein alcoho 98.6 5.4E-06 1.8E-10 85.8 21.9 176 153-355 121-338 (689)
239 3hxj_A Pyrrolo-quinoline quino 98.5 1.7E-05 5.8E-10 74.1 21.7 216 154-468 108-323 (330)
240 3qqz_A Putative uncharacterize 98.5 8.9E-05 3E-09 65.8 24.9 208 138-401 24-250 (255)
241 3mbr_X Glutamine cyclotransfer 98.5 4.1E-05 1.4E-09 67.0 21.9 192 131-392 9-223 (243)
242 1ijq_A LDL receptor, low-densi 98.5 0.00041 1.4E-08 64.3 30.5 183 163-404 10-195 (316)
243 3nok_A Glutaminyl cyclase; bet 98.5 1.6E-05 5.4E-10 70.3 19.2 190 132-392 44-254 (268)
244 2p4o_A Hypothetical protein; p 98.5 0.00014 4.9E-09 67.2 26.8 242 131-450 22-277 (306)
245 3nol_A Glutamine cyclotransfer 98.5 2E-05 6.7E-10 69.7 19.4 191 199-450 45-244 (262)
246 3hxj_A Pyrrolo-quinoline quino 98.4 2.3E-06 7.7E-11 80.1 13.7 250 155-468 32-283 (330)
247 3p5b_L Low density lipoprotein 98.4 0.00028 9.6E-09 67.8 28.6 184 162-404 91-277 (400)
248 3v64_C Agrin; beta propeller, 98.4 0.00067 2.3E-08 63.9 30.6 204 138-404 70-275 (349)
249 1kb0_A Quinohemoprotein alcoho 98.4 2.6E-05 9E-10 80.5 22.1 101 346-469 457-567 (677)
250 3v65_B Low-density lipoprotein 98.4 0.00035 1.2E-08 66.8 28.5 204 138-404 113-318 (386)
251 3q7m_A Lipoprotein YFGL, BAMB; 98.4 3.8E-05 1.3E-09 73.3 21.4 219 153-405 103-338 (376)
252 3q7m_A Lipoprotein YFGL, BAMB; 98.4 5.4E-05 1.9E-09 72.2 22.2 222 153-405 53-297 (376)
253 1yiq_A Quinohemoprotein alcoho 98.4 3E-05 1E-09 80.2 21.3 83 345-450 454-537 (689)
254 3nok_A Glutaminyl cyclase; bet 98.4 8.9E-05 3.1E-09 65.5 20.8 181 199-449 57-253 (268)
255 2xe4_A Oligopeptidase B; hydro 98.3 0.00018 6.1E-09 75.4 26.7 197 142-401 175-395 (751)
256 1mda_H Methylamine dehydrogena 98.3 7.1E-06 2.4E-10 77.6 13.6 258 154-496 33-323 (368)
257 3mbr_X Glutamine cyclotransfer 98.3 0.00025 8.5E-09 62.1 22.2 195 198-450 22-223 (243)
258 1fwx_A Nitrous oxide reductase 98.3 4.3E-05 1.5E-09 75.6 19.3 168 280-468 135-360 (595)
259 1ijq_A LDL receptor, low-densi 98.3 0.0019 6.6E-08 59.8 29.7 207 138-404 27-238 (316)
260 2p4o_A Hypothetical protein; p 98.3 0.00022 7.5E-09 65.9 22.5 198 199-468 34-241 (306)
261 1k3i_A Galactose oxidase precu 98.3 6.8E-05 2.3E-09 77.4 20.8 74 145-228 190-275 (656)
262 3sov_A LRP-6, low-density lipo 98.2 0.00054 1.9E-08 63.5 24.3 183 162-404 12-197 (318)
263 3p5b_L Low density lipoprotein 98.2 0.0039 1.3E-07 59.8 30.2 209 137-405 108-321 (400)
264 3m0c_C LDL receptor, low-densi 98.2 0.00092 3.2E-08 69.7 27.0 184 162-404 403-589 (791)
265 2fp8_A Strictosidine synthase; 98.2 0.00021 7.2E-09 66.5 20.4 114 280-404 186-313 (322)
266 1kv9_A Type II quinohemoprotei 98.1 7.5E-05 2.6E-09 77.0 18.1 176 154-355 118-333 (668)
267 1n7d_A LDL receptor, low-densi 98.1 1.4E-05 4.9E-10 82.6 12.5 115 281-404 455-571 (699)
268 3sov_A LRP-6, low-density lipo 98.1 0.004 1.4E-07 57.6 27.6 201 142-405 36-239 (318)
269 3tc9_A Hypothetical hydrolase; 98.0 0.0022 7.5E-08 62.2 25.1 157 142-355 138-301 (430)
270 2xe4_A Oligopeptidase B; hydro 98.0 0.00026 9.1E-09 74.1 19.3 158 198-404 175-354 (751)
271 4hw6_A Hypothetical protein, I 98.0 0.006 2.1E-07 59.1 27.6 201 142-402 140-372 (433)
272 3m0c_C LDL receptor, low-densi 98.0 0.006 2.1E-07 63.6 28.6 210 136-405 419-633 (791)
273 1k3i_A Galactose oxidase precu 97.9 0.00073 2.5E-08 69.6 20.7 74 143-229 245-325 (656)
274 4a2l_A BT_4663, two-component 97.9 0.017 5.9E-07 60.8 31.3 250 141-468 263-525 (795)
275 1n7d_A LDL receptor, low-densi 97.9 0.0003 1E-08 72.8 16.2 205 140-404 405-614 (699)
276 4a0p_A LRP6, LRP-6, low-densit 97.8 0.0097 3.3E-07 60.6 26.9 183 161-404 13-197 (628)
277 2ad6_A Methanol dehydrogenase 97.8 0.0017 5.9E-08 65.4 20.8 70 153-234 115-192 (571)
278 4a2l_A BT_4663, two-component 97.8 0.014 5E-07 61.4 28.1 245 143-468 175-435 (795)
279 3qqz_A Putative uncharacterize 97.8 0.015 5.3E-07 51.4 23.8 206 192-467 23-251 (255)
280 1kv9_A Type II quinohemoprotei 97.8 0.0015 5E-08 67.4 19.3 53 345-405 437-489 (668)
281 3kya_A Putative phosphatase; s 97.7 0.025 8.6E-07 55.1 26.2 163 143-354 141-340 (496)
282 1w6s_A Methanol dehydrogenase 97.7 0.0078 2.7E-07 60.8 22.4 59 301-368 278-349 (599)
283 3tc9_A Hypothetical hydrolase; 97.6 0.002 6.7E-08 62.5 17.2 157 199-404 139-301 (430)
284 3s94_A LRP-6, low-density lipo 97.6 0.018 6.2E-07 58.5 23.8 183 162-404 17-202 (619)
285 4hw6_A Hypothetical protein, I 97.5 0.018 6.1E-07 55.7 21.9 156 199-404 141-304 (433)
286 3v9f_A Two-component system se 97.5 0.079 2.7E-06 55.6 28.0 246 140-469 312-568 (781)
287 3s94_A LRP-6, low-density lipo 97.4 0.052 1.8E-06 55.1 25.3 203 140-405 39-244 (619)
288 3v9f_A Two-component system se 97.4 0.1 3.5E-06 54.7 28.4 246 140-448 257-512 (781)
289 3amr_A 3-phytase; beta-propell 97.4 0.019 6.6E-07 52.9 19.6 123 279-404 128-263 (355)
290 2p9w_A MAL S 1 allergenic prot 97.4 0.0039 1.3E-07 57.0 14.8 162 200-404 16-215 (334)
291 2ad6_A Methanol dehydrogenase 97.4 0.017 6E-07 58.1 21.0 54 344-405 442-495 (571)
292 2xbg_A YCF48-like protein; pho 97.4 0.078 2.7E-06 49.1 24.0 116 277-403 161-277 (327)
293 1flg_A Protein (quinoprotein e 97.4 0.04 1.4E-06 55.5 23.1 52 301-355 291-355 (582)
294 3amr_A 3-phytase; beta-propell 97.3 0.042 1.4E-06 50.7 20.4 155 294-468 90-262 (355)
295 1w6s_A Methanol dehydrogenase 97.3 0.022 7.6E-07 57.4 20.5 53 345-405 452-504 (599)
296 4a0p_A LRP6, LRP-6, low-densit 97.3 0.19 6.6E-06 51.0 29.4 200 141-405 37-238 (628)
297 2p9w_A MAL S 1 allergenic prot 97.2 0.035 1.2E-06 50.7 18.6 166 274-469 8-215 (334)
298 1flg_A Protein (quinoprotein e 97.2 0.041 1.4E-06 55.4 21.1 82 345-449 465-547 (582)
299 2xbg_A YCF48-like protein; pho 97.1 0.11 3.6E-06 48.2 22.1 196 139-402 120-320 (327)
300 3kya_A Putative phosphatase; s 97.1 0.017 5.8E-07 56.3 16.2 173 280-468 140-340 (496)
301 3ei3_A DNA damage-binding prot 97.0 0.28 9.7E-06 53.5 26.5 80 135-226 548-635 (1158)
302 2ism_A Putative oxidoreductase 97.0 0.24 8.2E-06 46.3 24.8 243 141-447 31-331 (352)
303 2vpj_A Kelch-like protein 12; 96.7 0.17 5.9E-06 45.9 19.1 103 292-404 114-231 (301)
304 3sre_A PON1, serum paraoxonase 96.6 0.3 1E-05 45.5 20.2 115 280-404 113-252 (355)
305 3pbp_A Nucleoporin NUP82; beta 96.6 0.37 1.3E-05 45.6 20.5 156 152-351 31-208 (452)
306 2xn4_A Kelch-like protein 2; s 96.6 0.24 8.2E-06 45.0 19.5 103 292-404 110-229 (302)
307 3ii7_A Kelch-like protein 7; p 96.4 0.39 1.3E-05 43.6 19.8 103 292-404 103-225 (306)
308 1zgk_A Kelch-like ECH-associat 96.4 0.28 9.5E-06 44.7 18.4 103 292-404 123-240 (308)
309 2xzh_A Clathrin heavy chain 1; 96.3 0.65 2.2E-05 42.2 22.1 208 134-404 100-332 (365)
310 3a9g_A Putative uncharacterize 96.2 0.76 2.6E-05 42.8 26.1 247 140-449 28-329 (354)
311 3pbp_A Nucleoporin NUP82; beta 96.2 0.92 3.1E-05 42.9 20.7 139 300-447 40-196 (452)
312 2xzh_A Clathrin heavy chain 1; 96.0 0.84 2.9E-05 41.5 27.3 196 149-405 75-291 (365)
313 2vpj_A Kelch-like protein 12; 95.8 0.41 1.4E-05 43.3 16.5 103 292-404 161-278 (301)
314 3sre_A PON1, serum paraoxonase 95.7 1.3 4.5E-05 41.1 20.7 111 279-401 165-295 (355)
315 1bpo_A Protein (clathrin); cla 95.7 1.5 5.1E-05 41.6 23.6 208 134-404 99-331 (494)
316 3ii7_A Kelch-like protein 7; p 95.6 0.42 1.4E-05 43.4 15.8 103 292-404 151-272 (306)
317 2xn4_A Kelch-like protein 2; s 95.6 0.3 1E-05 44.3 14.6 103 292-404 157-276 (302)
318 4asc_A Kelch repeat and BTB do 95.2 1.1 3.9E-05 40.7 17.4 103 292-404 100-221 (315)
319 1bpo_A Protein (clathrin); cla 95.2 2.2 7.7E-05 40.4 29.8 197 148-405 73-290 (494)
320 1xi4_A Clathrin heavy chain; a 94.8 1.9 6.5E-05 47.3 19.5 208 202-482 71-296 (1630)
321 2g8s_A Glucose/sorbosone dehyd 94.6 0.77 2.6E-05 42.8 14.7 28 199-226 20-47 (353)
322 3das_A Putative oxidoreductase 94.6 0.99 3.4E-05 41.8 15.0 154 199-390 34-218 (347)
323 2ism_A Putative oxidoreductase 94.6 2.9 9.9E-05 38.8 19.8 65 324-391 268-332 (352)
324 1xi4_A Clathrin heavy chain; a 94.4 4.1 0.00014 44.9 20.7 196 149-405 74-290 (1630)
325 1tl2_A L10, protein (tachylect 94.4 0.63 2.1E-05 39.7 11.8 62 281-348 90-156 (236)
326 1zgk_A Kelch-like ECH-associat 94.2 0.94 3.2E-05 41.1 14.0 103 292-404 170-287 (308)
327 2woz_A Kelch repeat and BTB do 93.8 3.8 0.00013 37.1 18.1 103 292-404 111-231 (318)
328 1cru_A Protein (soluble quinop 93.7 4.7 0.00016 38.9 18.4 29 199-227 29-57 (454)
329 3ei3_A DNA damage-binding prot 93.5 5.8 0.0002 43.3 20.6 203 141-401 829-1059(1158)
330 1tl2_A L10, protein (tachylect 93.5 0.69 2.4E-05 39.4 10.4 105 279-398 41-157 (236)
331 4asc_A Kelch repeat and BTB do 93.0 2 6.7E-05 39.1 14.0 61 292-355 150-221 (315)
332 1cru_A Protein (soluble quinop 92.8 7.3 0.00025 37.5 20.6 119 273-393 21-163 (454)
333 2g8s_A Glucose/sorbosone dehyd 92.7 6.1 0.00021 36.6 25.1 62 373-447 271-339 (353)
334 2woz_A Kelch repeat and BTB do 92.2 3.5 0.00012 37.4 14.6 61 292-355 160-231 (318)
335 2uvk_A YJHT; unknown function, 91.7 6.2 0.00021 36.4 15.9 51 301-353 168-224 (357)
336 2zwa_A Leucine carboxyl methyl 89.3 13 0.00043 38.2 16.9 66 289-355 500-577 (695)
337 3das_A Putative oxidoreductase 87.8 17 0.00057 33.5 27.7 252 139-448 30-325 (347)
338 3a9g_A Putative uncharacterize 87.5 18 0.0006 33.4 21.8 63 324-392 259-330 (354)
339 2uvk_A YJHT; unknown function, 86.0 4.5 0.00015 37.3 10.4 22 152-173 65-96 (357)
340 3b7f_A Glycosyl hydrolase, BNR 83.8 28 0.00096 32.4 20.0 72 279-350 115-203 (394)
341 2zwa_A Leucine carboxyl methyl 83.4 16 0.00054 37.5 13.8 65 152-228 451-523 (695)
342 2be1_A Serine/threonine-protei 81.6 14 0.00048 33.9 11.3 59 292-352 112-181 (339)
343 2wg3_C Hedgehog-interacting pr 78.7 25 0.00086 33.8 12.6 119 324-452 14-159 (463)
344 3s25_A Hypothetical 7-bladed b 77.9 24 0.0008 31.7 11.5 101 285-404 59-176 (302)
345 4gq2_M Nucleoporin NUP120; bet 74.7 33 0.0011 36.5 13.3 36 198-233 237-272 (950)
346 3ott_A Two-component system se 69.4 1.1E+02 0.0036 31.5 24.2 109 279-404 146-260 (758)
347 4gq2_M Nucleoporin NUP120; bet 68.6 1.1E+02 0.0037 32.6 15.5 32 373-405 236-267 (950)
348 3sbq_A Nitrous-oxide reductase 66.9 4.7 0.00016 39.6 4.1 98 302-404 299-408 (638)
349 3b7f_A Glycosyl hydrolase, BNR 66.4 82 0.0028 29.1 23.2 65 279-346 177-254 (394)
350 1sqj_A OXG-RCBH, oligoxylogluc 64.4 1.4E+02 0.0047 31.0 20.6 30 140-169 14-43 (789)
351 3sbq_A Nitrous-oxide reductase 54.3 62 0.0021 31.9 9.3 77 278-355 322-408 (638)
352 3ott_A Two-component system se 51.5 2.1E+02 0.0073 29.2 26.1 217 140-447 21-248 (758)
353 2be1_A Serine/threonine-protei 49.9 54 0.0018 29.9 8.0 117 209-369 11-138 (339)
354 3zwu_A Alkaline phosphatase PH 47.1 2.3E+02 0.0077 28.2 13.9 59 325-390 477-548 (592)
355 4fhn_B Nucleoporin NUP120; pro 46.2 24 0.00083 38.5 5.9 36 198-233 239-274 (1139)
356 3zwu_A Alkaline phosphatase PH 44.9 54 0.0018 32.6 7.6 29 186-214 520-548 (592)
357 3s25_A Hypothetical 7-bladed b 40.2 2E+02 0.0068 25.5 20.3 103 284-404 150-255 (302)
358 3q6k_A 43.2 kDa salivary prote 40.0 2.3E+02 0.0079 26.2 18.9 122 279-404 152-306 (381)
359 3qhy_B Beta-lactamase inhibito 34.4 2.3E+02 0.008 24.7 20.3 145 279-469 102-246 (282)
360 4a9v_A PHOX; hydrolase, beta-p 33.1 1.3E+02 0.0043 29.8 8.0 60 142-214 477-548 (592)
361 4a9v_A PHOX; hydrolase, beta-p 33.0 1.5E+02 0.0053 29.2 8.5 63 324-393 476-551 (592)
362 3uc1_A DNA gyrase subunit A; D 32.7 2.8E+02 0.0094 25.0 20.4 160 207-404 108-279 (327)
363 1sqj_A OXG-RCBH, oligoxylogluc 32.6 1.7E+02 0.0058 30.3 9.6 63 278-343 14-83 (789)
364 4fhn_B Nucleoporin NUP120; pro 32.4 4.3E+02 0.015 28.7 13.1 31 432-470 239-269 (1139)
365 2cn3_A Xyloglucanase, beta-1,4 29.5 2.5E+02 0.0084 28.7 10.1 115 279-399 23-159 (737)
366 2lid_A Vitellogenin; lipid tra 35.1 12 0.0004 19.8 0.0 10 9-18 25-34 (35)
367 2wg3_C Hedgehog-interacting pr 27.4 4.1E+02 0.014 25.3 31.0 28 142-171 15-44 (463)
368 3f7f_A Nucleoporin NUP120; nuc 22.0 93 0.0032 31.7 4.9 28 325-355 223-250 (729)
369 3uc1_A DNA gyrase subunit A; D 21.3 4.5E+02 0.015 23.6 20.8 165 152-355 108-279 (327)
370 4hvt_A Ritya.17583.B, post-pro 21.1 6.6E+02 0.023 25.5 24.8 107 344-468 318-429 (711)
No 1
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2e-57 Score=449.41 Aligned_cols=390 Identities=34% Similarity=0.661 Sum_probs=304.1
Q ss_pred hhccccchhhhhccccCChhHhHhhhhCcCCCCcceEeccCCcccC--CCcceEEEEEEeecCCCCCCeEEEEEEeccCc
Q 010997 34 TAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQA--TYKNRQRLYLSEQTDGSVPNTLVIANCEVVKP 111 (496)
Q Consensus 34 ~~~~~~~~~~~~~w~~~~~~ly~~~~~~~~~wps~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 111 (496)
+.+++.++|+|++||||+|+||+++++|.++||+|+++|+|..... .....+++++||++++ ..|.|+|+++.++..
T Consensus 15 ~~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~-~~n~i~i~~~~lp~~ 93 (430)
T 2xyi_A 15 AVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD-EQNHLLIASVQLPSE 93 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS-SCEEEEEEEEEEC--
T ss_pred chhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCC-CCCEEEEEEEECCCC
Confidence 4467889999999999999999999999999999999999985432 2234699999999998 999999999887543
Q ss_pred chhhhccccccCcc--------cCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCC
Q 010997 112 RVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGAT 183 (496)
Q Consensus 112 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~ 183 (496)
.. ......++++ ...+.++....+.|.+.|++++|+|+++.+||+++.||.|+|||+......... ..
T Consensus 94 ~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--~~ 169 (430)
T 2xyi_A 94 DA--QFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP--SG 169 (430)
T ss_dssp --------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT--TC
T ss_pred cc--ccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc--cc
Confidence 21 1111112221 234556678889999999999999966889999999999999999874222110 11
Q ss_pred CCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCC
Q 010997 184 NSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKA 262 (496)
Q Consensus 184 ~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (496)
...+...+.+|.. .|++++|+|++. +|++|+.||.|++||+.......
T Consensus 170 ~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------------------------ 218 (430)
T 2xyi_A 170 ECQPDLRLRGHQK-EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------------------ 218 (430)
T ss_dssp CCCCSEEEECCSS-CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG------------------------------
T ss_pred cCCCcEEecCCCC-CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC------------------------------
Confidence 2367788999988 689999999988 99999999999999998632110
Q ss_pred CCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEE
Q 010997 263 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (496)
Q Consensus 263 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~s 341 (496)
....+...+.+|...|.+++|+|++..+|++++.||.|++||+++.. ......+..|...|++++|+|....+|++
T Consensus 219 ---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t 295 (430)
T 2xyi_A 219 ---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295 (430)
T ss_dssp ---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE
Confidence 00112356778999999999999666899999999999999999873 12445566899999999999944458999
Q ss_pred EcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe
Q 010997 342 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 421 (496)
Q Consensus 342 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 421 (496)
|+.||.|++||+++. ..++..+..|...|.+++|+|++..+|++++.|+.|+|||+...+..+..... ...++.
T Consensus 296 g~~dg~v~vwd~~~~-----~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~ 369 (430)
T 2xyi_A 296 GSADKTVALWDLRNL-----KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-EDGPPE 369 (430)
T ss_dssp EETTSEEEEEETTCT-----TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH-HHCCTT
T ss_pred EeCCCeEEEEeCCCC-----CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc-ccCCcc
Confidence 999999999999974 35788999999999999999999888999999999999999875332211100 124457
Q ss_pred eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCc
Q 010997 422 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 475 (496)
Q Consensus 422 ~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~ 475 (496)
+++.+.+|...|++++|+|++++++++++.| |.|+||++...++.+.
T Consensus 370 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d-------g~i~iw~~~~~~~~~~ 416 (430)
T 2xyi_A 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSED-------NIMQVWQMAENVYNDE 416 (430)
T ss_dssp EEEECCCCSSCEEEEEECSSSTTEEEEEETT-------SEEEEEEECHHHHCC-
T ss_pred eEEEcCCCCCCceEEEECCCCCCEEEEEECC-------CCEEEeEcccccccCC
Confidence 8899999999999999999999888877765 9999999986655433
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.5e-44 Score=350.60 Aligned_cols=270 Identities=20% Similarity=0.372 Sum_probs=241.5
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..+.+|.++|++++|+| ++.+||+|+.||+|+|||+.++ +....+.+|.+ .|.+++|+|++++|++
T Consensus 102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~------------~~~~~l~~h~~-~V~~v~~~~~~~~l~s 167 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG------------DFERTLKGHTD-SVQDISFDHSGKLLAS 167 (410)
T ss_dssp CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEeccCC-cEEEEEEcCCCCEEEE
Confidence 45679999999999999 8889999999999999999988 56778999998 6999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.||+|++||+.+.. .+..+.+|...|.+++|+|++ .+
T Consensus 168 gs~D~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~v~~~p~~-~~ 206 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFE----------------------------------------CIRTMHGHDHNVSSVSIMPNG-DH 206 (410)
T ss_dssp EETTSCCCEEETTSSC----------------------------------------EEECCCCCSSCEEEEEECSSS-SE
T ss_pred EeCCCeEEEEeCCCCc----------------------------------------eeEEEcCCCCCEEEEEEeCCC-CE
Confidence 9999999999987532 235677899999999999998 78
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
|++|+.|++|++||++++. ....+.+|...|.+++|+| ++.+|++|+.||.|++||+++ +.+...+.+|..
T Consensus 207 l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~------~~~~~~~~~h~~ 277 (410)
T 1vyh_C 207 IVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT------KECKAELREHRH 277 (410)
T ss_dssp EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCCSS
T ss_pred EEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CceeeEecCCCc
Confidence 9999999999999999987 6777889999999999999 999999999999999999998 778889999999
Q ss_pred CEEEEEEcCCC-------------------CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997 374 AVLCVQWSPDK-------------------SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 434 (496)
Q Consensus 374 ~i~~l~~sp~~-------------------~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 434 (496)
.|.+++|+|++ ..+|++|+.|+.|++||++.. ..+..+.+|...|.
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---------------~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---------------MCLMTLVGHDNWVR 342 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEE
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---------------ceEEEEECCCCcEE
Confidence 99999999973 226789999999999999874 56777889999999
Q ss_pred eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+++|+|++.+++ +|+.||+|+|||+. .++++.++.+|...|.+++|+|
T Consensus 343 ~v~~~~~g~~l~--------s~s~D~~i~vwd~~------~~~~~~~~~~h~~~v~~l~~~~ 390 (410)
T 1vyh_C 343 GVLFHSGGKFIL--------SCADDKTLRVWDYK------NKRCMKTLNAHEHFVTSLDFHK 390 (410)
T ss_dssp EEEECSSSSCEE--------EEETTTEEEEECCT------TSCCCEEEECCSSCEEEEEECS
T ss_pred EEEEcCCCCEEE--------EEeCCCeEEEEECC------CCceEEEEcCCCCcEEEEEEcC
Confidence 999999888766 45556999999998 5677788899999999999997
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-43 Score=333.14 Aligned_cols=270 Identities=21% Similarity=0.308 Sum_probs=234.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+.+|.+.|++++|+| ++.+||+|+.||.|+|||+.++ .....+.+|.. .|.+++|+|++++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIVG 73 (304)
T ss_dssp EEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEEE
T ss_pred eecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCC-cEEEEEEeCCCCEEEEE
Confidence 4568999999999999 8899999999999999999887 56678888887 79999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.|++|++||+.++. .+..+.+|...|.+++|+|++ .+|
T Consensus 74 s~d~~i~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l 112 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PYV 112 (304)
T ss_dssp ETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SEE
T ss_pred CCCCEEEEEECCCCc----------------------------------------EEEEEeCCCCcEEEEEEcCCC-CEE
Confidence 999999999997543 236788999999999999998 789
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSA 373 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~ 373 (496)
++|+.|++|++||++++.. ....+.+|...|.+++|+|.++.+|++|+.||+|++||++. ..+...+ .+|..
T Consensus 113 ~sgs~D~~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~------~~~~~~~~~~~~~ 185 (304)
T 2ynn_A 113 LSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQER 185 (304)
T ss_dssp EEEETTSCEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC------SSCSEEEECCCTT
T ss_pred EEECCCCeEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC------CCccceeccCCcC
Confidence 9999999999999987752 45567799999999999996678999999999999999987 4455444 45678
Q ss_pred CEEEEEEcC--CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997 374 AVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 374 ~i~~l~~sp--~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
.|..+.|+| ++. +|++|+.|+.|++||++.. .++..+.+|...|..++|+|+++. ++|
T Consensus 186 ~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~-l~s--- 245 (304)
T 2ynn_A 186 GVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPI-IIS--- 245 (304)
T ss_dssp CEEEEEECCSTTCC-EEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSE-EEE---
T ss_pred cEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCC---------------ccceeeCCCCCCEEEEEECCCCCE-EEE---
Confidence 899999987 455 5789999999999999874 567788999999999999998875 554
Q ss_pred CCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|+.||+|+|||+. +++++.++..|...+.+++|+|
T Consensus 246 ----~s~Dg~i~iWd~~------~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 246 ----GSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp ----EETTSCEEEEETT------TCCEEEEECCSSSSEEEEEECT
T ss_pred ----EcCCCeEEEEECC------CCceeeeccCCCccEEEEEECC
Confidence 4455999999998 6777788889999999999887
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=334.76 Aligned_cols=270 Identities=17% Similarity=0.305 Sum_probs=234.3
Q ss_pred EecCCCceeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 136 TIIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~---~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
..+|.+.|++++|+|. ++.+||||+.|++|+|||+.... ......+.+|.. .|.+++|++++.+++
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~----------~~~~~~l~gh~~-~v~~~~~~~~~~~l~ 96 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER----------LDLQWSLEGHQL-GVVSVDISHTLPIAA 96 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSS-CEEEEEECSSSSEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC----------eeeeeeeccCCC-CEEEEEECCCCCEEE
Confidence 3589999999999983 46799999999999999987651 123456889998 699999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.|++|++||+.++.. +..+..|...+.+++|+|++ .
T Consensus 97 s~s~D~~i~lWd~~~~~~----------------------------------------~~~~~~~~~~~~~~~~spdg-~ 135 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENGKQ----------------------------------------IKSIDAGPVDAWTLAFSPDS-Q 135 (321)
T ss_dssp EEETTSEEEEEETTTTEE----------------------------------------EEEEECCTTCCCCEEECTTS-S
T ss_pred EEeCCCcEEEEECCCCCE----------------------------------------EEEEeCCCccEEEEEECCCC-C
Confidence 999999999999975432 35667788889999999999 7
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
+|++++.||.|++||++++. ....+..|...|.+++|+| ++.+|++|+.||.|++||+++ +..+..+.+|.
T Consensus 136 ~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~h~ 206 (321)
T 3ow8_A 136 YLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT------GKLLHTLEGHA 206 (321)
T ss_dssp EEEEECTTSEEEEEETTTCS--EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCCS
T ss_pred EEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEcccC
Confidence 99999999999999999887 5566678889999999999 999999999999999999998 78899999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
.+|.+++|+|++. +|++|+.|+.|+|||++.. .+...+.+|...|.+++|+|++.++ +
T Consensus 207 ~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~---------------~~~~~~~~h~~~v~~~~~sp~~~~l-~----- 264 (321)
T 3ow8_A 207 MPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA---------------NLAGTLSGHASWVLNVAFCPDDTHF-V----- 264 (321)
T ss_dssp SCCCEEEECTTSC-EEEEECTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSEE-E-----
T ss_pred CceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc---------------ceeEEEcCCCCceEEEEECCCCCEE-E-----
Confidence 9999999999998 5789999999999999874 4566788999999999999988765 4
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|+.|++|+|||+. +++++.++.+|.+.|.+++|+|
T Consensus 265 --s~s~D~~v~iwd~~------~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 265 --SSSSDKSVKVWDVG------TRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp --EEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEECT
T ss_pred --EEeCCCcEEEEeCC------CCEEEEEEcCCCCcEEEEEECC
Confidence 44455999999998 6778888999999999999997
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=331.08 Aligned_cols=256 Identities=20% Similarity=0.306 Sum_probs=214.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
.....|...|++++|+| ++ .|++|+.||+|+|||+.++.... .....+.+|.+ .|++++|+|++++|++
T Consensus 76 ~~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~H~~-~V~~v~~spdg~~l~s 144 (344)
T 4gqb_B 76 SAGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLI--------VSKFCKYEHDD-IVSTVSVLSSGTQAVS 144 (344)
T ss_dssp SEEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCE--------EEEEEEECCSS-CEEEEEECTTSSEEEE
T ss_pred eeeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCcee--------EeeccccCCCC-CEEEEEECCCCCEEEE
Confidence 34567888999999999 54 67899999999999998873211 12234568987 7999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.||+|++||++++. .+..+.+|...|.+++|+|++..+
T Consensus 145 gs~d~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQV----------------------------------------VLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECSSCTTE
T ss_pred EeCCCeEEEEECCCCc----------------------------------------EEEEEcCcCCceEEEEecCCCCCc
Confidence 9999999999997543 246788999999999999998778
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
|++|+.|++|++||+++++.........+...+++++|+|.++.+|++|+.||.|+|||+++ ++++.++.+|..
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~------~~~~~~~~~h~~ 258 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS------TSCVLSSAVHSQ 258 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSS
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC------CcEEEEEcCCCC
Confidence 99999999999999998873222222456678999999996778999999999999999998 789999999999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
.|++++|+|++..+||+|+.|+.|+|||+... .+..+.+|.+.|++++|+|++..+++|++.|
T Consensus 259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~----------------~~~~~~~H~~~V~~v~~sp~~~~llas~s~D- 321 (344)
T 4gqb_B 259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS----------------ELFRSQAHRDFVRDATWSPLNHSLLTTVGWD- 321 (344)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTCC----------------EEEEECCCSSCEEEEEECSSSTTEEEEEETT-
T ss_pred CEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------------cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC-
Confidence 99999999998767889999999999999873 3445789999999999999999999876665
Q ss_pred CCCCCCCeEEEeecCC
Q 010997 454 DSTGGGGTLQIWRMSD 469 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~~ 469 (496)
|+|++|++..
T Consensus 322 ------~~v~~w~v~~ 331 (344)
T 4gqb_B 322 ------HQVVHHVVPT 331 (344)
T ss_dssp ------SCEEEEECCC
T ss_pred ------CeEEEEECCC
Confidence 9999999984
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.1e-42 Score=329.69 Aligned_cols=275 Identities=16% Similarity=0.298 Sum_probs=234.4
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
...+.+|.+.|++++|+| ++++||+|+.||+|+|||+.+. .....+..|.. .|.+++|+|++++|+
T Consensus 48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTT------------NKVHAIPLRSS-WVMTCAYAPSGNYVA 113 (340)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECSSS-CEEEEEECTTSSEEE
T ss_pred heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------CcceEeecCCc-cEEEEEECCCCCEEE
Confidence 345678999999999999 8899999999999999999887 55677888887 699999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.|+.|++|++.+... .......+.+|.+.|.++.|++++
T Consensus 114 s~~~d~~v~iw~~~~~~~------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~-- 155 (340)
T 1got_B 114 CGGLDNICSIYNLKTREG------------------------------------NVRVSRELAGHTGYLSCCRFLDDN-- 155 (340)
T ss_dssp EEETTCEEEEEETTTCSB------------------------------------SCEEEEEEECCSSCEEEEEEEETT--
T ss_pred EEeCCCeEEEEECccCCC------------------------------------cceeEEEecCCCccEEEEEECCCC--
Confidence 999999999999875321 112235678999999999999887
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
.+++++.|++|++||++++. ....+.+|...|.+++|+| ++.+|++|+.||.|++||+++ +.++..+.+|.
T Consensus 156 ~l~s~s~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~------~~~~~~~~~h~ 226 (340)
T 1got_B 156 QIVTSSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE------GMCRQTFTGHE 226 (340)
T ss_dssp EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CSEEEEECCCS
T ss_pred cEEEEECCCcEEEEECCCCc--EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC------CeeEEEEcCCc
Confidence 48999999999999999887 5677789999999999999 899999999999999999998 78889999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
..|.+++|+|++. +|++|+.||.|++||++.... ...+.+..+...|.+++|+|++.+++
T Consensus 227 ~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~~l~------ 286 (340)
T 1got_B 227 SDINAICFFPNGN-AFATGSDDATCRLFDLRADQE-------------LMTYSHDNIICGITSVSFSKSGRLLL------ 286 (340)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-------------EEEECCTTCCSCEEEEEECTTSSEEE------
T ss_pred CCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcE-------------EEEEccCCcccceEEEEECCCCCEEE------
Confidence 9999999999998 568999999999999987411 11222334455799999999887655
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|+.||.|++||+. .++.+..+.+|.++|.+++|+|
T Consensus 287 --~g~~d~~i~vwd~~------~~~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 287 --AGYDDFNCNVWDAL------KADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp --EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred --EECCCCeEEEEEcc------cCcEeeEeecCCCcEEEEEEcC
Confidence 44456999999998 4566778899999999999997
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=314.58 Aligned_cols=287 Identities=18% Similarity=0.346 Sum_probs=237.8
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
+..++.|.|.-.. ....|+ +++.+..++||+..... ........+|...|.+
T Consensus 34 ~V~~v~~~~~~~~----~~~~l~-----tgs~D~~v~vW~~~~~~-------------------~~~~~~l~gh~~~v~~ 85 (321)
T 3ow8_A 34 AIWSVAWGTNKKE----NSETVV-----TGSLDDLVKVWKWRDER-------------------LDLQWSLEGHQLGVVS 85 (321)
T ss_dssp CEEEEEEC-----------CEEE-----EEETTSCEEEEEEETTE-------------------EEEEEEECCCSSCEEE
T ss_pred cEEEEEEecCCCC----CCCEEE-----EEcCCCCEEEEECCCCC-------------------eeeeeeeccCCCCEEE
Confidence 5668888874211 112332 34578899999864211 0112345689999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~ 225 (496)
++|+| ++.++|+++.|++|++||+.++ +....+..|.. .+.+++|+|++++|++|+.||.|++||+
T Consensus 86 ~~~~~-~~~~l~s~s~D~~i~lWd~~~~------------~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 86 VDISH-TLPIAASSSLDAHIRLWDLENG------------KQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred EEECC-CCCEEEEEeCCCcEEEEECCCC------------CEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 99999 8889999999999999999887 55667788876 5889999999999999999999999999
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (496)
+++.. ...+..|...|.+++|+|++ .+|++|+.||.|++
T Consensus 152 ~~~~~----------------------------------------~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~i 190 (321)
T 3ow8_A 152 ESGKK----------------------------------------EYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINI 190 (321)
T ss_dssp TTCSE----------------------------------------EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred CCCce----------------------------------------eEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEE
Confidence 75432 25567788899999999999 79999999999999
Q ss_pred EEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC
Q 010997 306 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS 385 (496)
Q Consensus 306 wd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~ 385 (496)
||+++++ ....+.+|...|++++|+| ++.+|++|+.||.|++||++. +..+..+.+|...|.+++|+|++.
T Consensus 191 wd~~~~~--~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 191 FDIATGK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQH------ANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EETTTTE--EEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred EECCCCc--EEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCC------cceeEEEcCCCCceEEEEECCCCC
Confidence 9999887 6677789999999999999 999999999999999999998 778889999999999999999998
Q ss_pred CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEe
Q 010997 386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 465 (496)
Q Consensus 386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw 465 (496)
+ |++++.|+.|+|||+... .++..+.+|...|.+++|+|++..+ ++ +|.||+|+||
T Consensus 262 ~-l~s~s~D~~v~iwd~~~~---------------~~~~~~~~h~~~v~~v~~s~~g~~l-~s-------~~~d~~i~vw 317 (321)
T 3ow8_A 262 H-FVSSSSDKSVKVWDVGTR---------------TCVHTFFDHQDQVWGVKYNGNGSKI-VS-------VGDDQEIHIY 317 (321)
T ss_dssp E-EEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECTTSSEE-EE-------EETTCCEEEE
T ss_pred E-EEEEeCCCcEEEEeCCCC---------------EEEEEEcCCCCcEEEEEECCCCCEE-EE-------EeCCCeEEEE
Confidence 4 679999999999999874 5677788999999999999988765 44 4455999999
Q ss_pred ecC
Q 010997 466 RMS 468 (496)
Q Consensus 466 ~~~ 468 (496)
|..
T Consensus 318 d~p 320 (321)
T 3ow8_A 318 DCP 320 (321)
T ss_dssp ECC
T ss_pred eCC
Confidence 974
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.7e-41 Score=323.80 Aligned_cols=278 Identities=17% Similarity=0.294 Sum_probs=233.1
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..+.+|.+.|++++|+| ++.+||||+.||+|+|||..+. +....+..|.. .|.+++|+|++.+|++
T Consensus 58 ~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~------------~~~~~~~~~~~-~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTT------------NKEHAVTMPCT-WVMACAYAPSGCAIAC 123 (354)
T ss_dssp EEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECSSS-CCCEEEECTTSSEEEE
T ss_pred EEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CcceEEecCCC-CEEEEEECCCCCEEEE
Confidence 45568999999999999 8899999999999999998877 45567777877 6899999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.|+.+++|++...... ........+.+|...|.+++|+|++ ..
T Consensus 124 g~~d~~i~v~~~~~~~~~----------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 168 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNE----------------------------------NMAAKKKSVAMHTNYLSACSFTNSD-MQ 168 (354)
T ss_dssp ESTTSEEEEEECCCCTTC----------------------------------CSGGGCEEEEECSSCEEEEEECSSS-SE
T ss_pred eeCCCCEEEEEEeccccc----------------------------------cccccceeeeccCCcEEEEEEeCCC-CE
Confidence 999999999998643210 0112235677899999999999998 78
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
|++++.|++|++||+++++ ....+.+|...|.+++|+|. ++.+|++|+.||.|++||+++ +.++..+.+|.
T Consensus 169 l~t~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~------~~~~~~~~~h~ 240 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS------GQCVQAFETHE 240 (354)
T ss_dssp EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT------CCEEEEECCCS
T ss_pred EEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC------CcEEEEecCCC
Confidence 9999999999999999887 67778899999999999883 358999999999999999998 78899999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
..|.+++|+|++. +|++|+.|+.|++||++.... ...+....+...+.+++|+|++..++
T Consensus 241 ~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~s~~g~~l~------ 300 (354)
T 2pbi_B 241 SDVNSVRYYPSGD-AFASGSDDATCRLYDLRADRE-------------VAIYSKESIIFGASSVDFSLSGRLLF------ 300 (354)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-------------EEEECCTTCCSCEEEEEECTTSSEEE------
T ss_pred CCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE-------------EEEEcCCCcccceeEEEEeCCCCEEE------
Confidence 9999999999998 578999999999999987411 11222223445789999999887655
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|+.|+.|+|||+. .++.+..+.+|.+.|.+++|+|
T Consensus 301 --~g~~d~~i~vwd~~------~~~~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 301 --AGYNDYTINVWDVL------KGSRVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp --EEETTSCEEEEETT------TCSEEEEECCCSSCEEEEEECT
T ss_pred --EEECCCcEEEEECC------CCceEEEEECCCCcEEEEEECC
Confidence 44456999999997 5666777889999999999998
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-41 Score=333.48 Aligned_cols=247 Identities=20% Similarity=0.386 Sum_probs=217.4
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|.+.|++++|+| ++++||+|+.||+|+|||+.+. ++...+.+|.. .|.+++|+|++++|++|
T Consensus 145 ~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~------------~~~~~~~~h~~-~V~~v~~~p~~~~l~s~ 210 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDH-NVSSVSIMPNGDHIVSA 210 (410)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS------------CEEECCCCCSS-CEEEEEECSSSSEEEEE
T ss_pred EEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC------------ceeEEEcCCCC-CEEEEEEeCCCCEEEEE
Confidence 4568999999999999 8889999999999999999876 55677889988 69999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.|++|++||+.++. .+..+.+|...|.++.|+|++ .+|
T Consensus 211 s~D~~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~g-~~l 249 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGY----------------------------------------CVKTFTGHREWVRMVRPNQDG-TLI 249 (410)
T ss_dssp ETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECTTS-SEE
T ss_pred eCCCeEEEEECCCCc----------------------------------------EEEEEeCCCccEEEEEECCCC-CEE
Confidence 999999999997543 236788999999999999998 799
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC-------------------CcEEEEEcCCCcEEEEeCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-------------------DNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~-------------------~~~l~sgs~dg~i~iwd~~~ 355 (496)
++|+.|++|++||++++. ....+..|...|.+++|+|.. +.+|++|+.||.|++||+++
T Consensus 250 ~s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp EEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EEEcCCCeEEEEECCCCc--eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999999887 566778999999999999931 56899999999999999998
Q ss_pred CCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 435 (496)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 435 (496)
+.++..+.+|...|.+++|+|++.+ |++|+.||.|++||+... .++..+.+|...|++
T Consensus 328 ------~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~---------------~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 328 ------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNK---------------RCMKTLNAHEHFVTS 385 (410)
T ss_dssp ------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTS---------------CCCEEEECCSSCEEE
T ss_pred ------CceEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------ceEEEEcCCCCcEEE
Confidence 7889999999999999999999996 569999999999999764 345567899999999
Q ss_pred EEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
++|+|++.+++ ||+.||+|+||+++
T Consensus 386 l~~~~~~~~l~--------sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 386 LDFHKTAPYVV--------TGSVDQTVKVWECR 410 (410)
T ss_dssp EEECSSSSCEE--------EEETTSEEEEEC--
T ss_pred EEEcCCCCEEE--------EEeCCCcEEEEeCC
Confidence 99999888765 55556999999864
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.7e-42 Score=327.34 Aligned_cols=280 Identities=19% Similarity=0.265 Sum_probs=219.2
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
.|...|.+++|+| ++.+|++++ |+++++||.................. .....|.. .|.+++|+|++ .|++|+.|
T Consensus 28 ~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~s~d~-~l~~~s~d 102 (344)
T 4gqb_B 28 CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFC-SAGVQTEA-GVADLTWVGER-GILVASDS 102 (344)
T ss_dssp SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGC-SEEEEESS-CEEEEEEETTT-EEEEEETT
T ss_pred cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCccee-eeeeccCC-CEEEEEEeCCC-eEEEEECC
Confidence 5778899999999 888998887 66888887432100000000001111 12233444 59999999985 68899999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|+|+|||++++.... .....+.+|.+.|++++|+|++ .+|++|
T Consensus 103 g~v~lWd~~~~~~~~------------------------------------~~~~~~~~H~~~V~~v~~spdg-~~l~sg 145 (344)
T 4gqb_B 103 GAVELWELDENETLI------------------------------------VSKFCKYEHDDIVSTVSVLSSG-TQAVSG 145 (344)
T ss_dssp SEEEEEEECTTSSCE------------------------------------EEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred CEEEEEeccCCCcee------------------------------------EeeccccCCCCCEEEEEECCCC-CEEEEE
Confidence 999999998653311 0113456899999999999999 799999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec--cCCCCE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--GHSAAV 375 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~~i 375 (496)
+.|++|++||+++++ .+..+.+|...|++++|+|.+..+|++|+.||+|++||+++ ++++..+. .|...+
T Consensus 146 s~d~~i~iwd~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~~~~~~~~~~~~~~~~ 217 (344)
T 4gqb_B 146 SKDICIKVWDLAQQV--VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC------PKPASQIGCSAPGYLP 217 (344)
T ss_dssp ETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS------SSCEEECC----CCCE
T ss_pred eCCCeEEEEECCCCc--EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc------cceeeeeecceeeccc
Confidence 999999999999887 67788899999999999994457899999999999999998 67777664 456679
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 455 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s 455 (496)
.+++|+|++..+||+|+.||.|+|||++.. .++..+.+|...|++++|+|++..++++++.|
T Consensus 218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---------------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D--- 279 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKST---------------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSED--- 279 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEESCC-----------------CCEEEECCSSCEEEEEECSSSSCCEEEEETT---
T ss_pred eeeeecCCCCcceEEeccCCcEEEEECCCC---------------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC---
Confidence 999999988778899999999999999874 45567789999999999999987778766665
Q ss_pred CCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 456 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 456 gg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
++|+|||+. .+++ ..+.+|.+.|.+|+|||
T Consensus 280 ----~~i~vwd~~------~~~~-~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 280 ----CSLAVLDSS------LSEL-FRSQAHRDFVRDATWSP 309 (344)
T ss_dssp ----SCEEEECTT------CCEE-EEECCCSSCEEEEEECS
T ss_pred ----CeEEEEECC------CCcE-EEEcCCCCCEEEEEEeC
Confidence 999999998 3443 35689999999999998
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-41 Score=330.92 Aligned_cols=279 Identities=18% Similarity=0.357 Sum_probs=230.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..+.+|.+.|++++|+| ++++||+|+.||+|+|||+.+. +....+.+|.. .|.+++|+|++++|++
T Consensus 60 ~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~------------~~~~~~~~h~~-~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTS------------QKTHAIKLHCP-WVMECAFAPNGQSVAC 125 (380)
T ss_dssp EEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT------------EEEEEEECCCT-TCCCCEECTTSSEEEE
T ss_pred ecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------ccceEEecCCC-CEEEEEECCCCCEEEE
Confidence 45678999999999999 8899999999999999999887 56678889988 6899999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.|+.|++||+.+..... ........+.+|.+.|.++.|+|+++..
T Consensus 126 ~~~d~~v~iw~~~~~~~~~---------------------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~ 172 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRD---------------------------------GNMPVSRVLTGHKGYASSCQYVPDQETR 172 (380)
T ss_dssp CCSSSCCEEEECCCCSSCC---------------------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSC
T ss_pred eeCCCcEEEEECCCCcccc---------------------------------CCccceeeccCCCcceEEEEEecCCCCE
Confidence 9999999999987532110 1112235678999999999999987678
Q ss_pred EEEEcCCCeEEEEEccCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
|++|+.|++|++||++++. ....+ .+|...|.+++|+|.++++|++|+.||.|++||++.. ...+..+
T Consensus 173 l~s~s~D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-----~~~~~~~ 245 (380)
T 3iz6_a 173 LITGSGDQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-----SRAVRTY 245 (380)
T ss_dssp EEEECTTSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-----CCCCEEE
T ss_pred EEEECCCCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-----CcceEEE
Confidence 9999999999999999887 34333 5789999999998868899999999999999999852 4678899
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-------CCCCcceEEecCC
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-------HRDKVVDFHWNAS 441 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~~~~~p~ 441 (496)
.+|...|.+++|+|++. .|++|+.||.|++||++.. ..+..+.. +...|++++|+|+
T Consensus 246 ~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~---------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 309 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTG---------------HQLQVYNREPDRNDNELPIVTSVAFSIS 309 (380)
T ss_dssp CCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTT---------------EEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred CCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCC---------------cEEEEecccccccccccCceEEEEECCC
Confidence 99999999999999998 4689999999999999874 22222222 2335899999998
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH----HhccceEEEeccCC
Q 010997 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL----EKFKAHVISCTSKP 496 (496)
Q Consensus 442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l----~~h~~~v~~~~~sP 496 (496)
+.+++ +|+.||.|+|||+. .++.+..+ .+|.+.|.+++|+|
T Consensus 310 g~~l~--------~g~~dg~i~vwd~~------~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 310 GRLLF--------AGYSNGDCYVWDTL------LAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp SSEEE--------EECTTSCEEEEETT------TCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred CCEEE--------EEECCCCEEEEECC------CCceEEEEecccCCCCCceEEEEECC
Confidence 88665 55556999999987 33333333 68999999999998
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-41 Score=326.19 Aligned_cols=275 Identities=17% Similarity=0.283 Sum_probs=219.5
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeC------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTD------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
..|.+.|++++|+| +|++||+|+. ||.|++|+..++.... .......+|.. .|++++|+|++.
T Consensus 39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--------~~~~~~~~~~~-~V~~~~~s~d~~- 107 (357)
T 4g56_B 39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--------SLCTAGVQTEA-GVTDVAWVSEKG- 107 (357)
T ss_dssp -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CG--------GGCSEEEECSS-CEEEEEEETTTE-
T ss_pred ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcce--------eEecccCCCCC-CEEEEEEcCCCC-
Confidence 36999999999999 9999999997 7789999987763221 22345567776 699999999986
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+++++.||+|+|||+.++..... ......+|...|++++|+|++
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~------------------------------------~~~~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLV------------------------------------NKFAKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp EEEEETTSCEEEC--------CC------------------------------------CCEEECCCSSCEEEEEECSSS
T ss_pred EEEEECCCEEEEeeccccceeEE------------------------------------EeeccCCCCCCEEEEEECCCC
Confidence 55677899999999976532111 113445799999999999998
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE--e
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK--F 368 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~--~ 368 (496)
.+|++|+.|+.|++||+++++ ....+.+|...|++++|+|....++++++.||.|++||+++ +.++.. +
T Consensus 152 -~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~------~~~~~~~~~ 222 (357)
T 4g56_B 152 -TQAVSGGKDFSVKVWDLSQKA--VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK------PKPATRIDF 222 (357)
T ss_dssp -SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS------SSCBCBCCC
T ss_pred -CEEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC------Cceeeeeee
Confidence 789999999999999999887 67778899999999999994456899999999999999998 444444 4
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
..|...+.+++|+|++..+||+|+.|+.|++||++.. ..+..+.+|...|++++|+|++..++|+
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---------------~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---------------DSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---------------GGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCC---------------cEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 4577889999999998878999999999999999874 3455678999999999999998877886
Q ss_pred ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
++.| ++|+|||+. .++++.. .+|.+.|.+|+|||
T Consensus 288 gs~D-------~~i~iwd~~------~~~~~~~-~~H~~~V~~vafsP 321 (357)
T 4g56_B 288 ISED-------CTVAVLDAD------FSEVFRD-LSHRDFVTGVAWSP 321 (357)
T ss_dssp EETT-------SCEEEECTT------SCEEEEE-CCCSSCEEEEEECS
T ss_pred EeCC-------CEEEEEECC------CCcEeEE-CCCCCCEEEEEEeC
Confidence 6665 999999998 4555444 37999999999998
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=322.79 Aligned_cols=299 Identities=18% Similarity=0.317 Sum_probs=229.1
Q ss_pred EEEecCCC-ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 134 HKTIIHPG-EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 134 ~~~~~h~~-~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
..+.+|.+ .|++++|+| ++++||+|+.||+|+|||+...... .......+|.. .|.+++|+|++++|+
T Consensus 9 ~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~---------~~~~~~~~h~~-~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWI---------CKSVLSEGHQR-TVRKVAWSPCGNYLA 77 (345)
T ss_dssp EEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEE---------EEEEECSSCSS-CEEEEEECTTSSEEE
T ss_pred eeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcce---------eeeeeccccCC-cEEEEEECCCCCEEE
Confidence 34557988 999999999 8899999999999999999766100 01122367887 799999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.|++|++||+.... ...+..+.+|...|.+++|+|++ .
T Consensus 78 s~s~D~~v~iw~~~~~~--------------------------------------~~~~~~~~~h~~~v~~v~~sp~~-~ 118 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDD--------------------------------------FECVTTLEGHENEVKSVAWAPSG-N 118 (345)
T ss_dssp EEETTSCEEEEEECCC---------------------------------------EEEEEEECCCSSCEEEEEECTTS-S
T ss_pred EEECCCcEEEEEccCCC--------------------------------------eEEEEEccCCCCCceEEEEeCCC-C
Confidence 99999999999986431 12236778999999999999998 7
Q ss_pred eEEEEcCCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 293 EFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
+|++|+.|++|++||++.... .....+..|...|.+++|+| ++.+|++|+.|+.|++||++... ..+...+.+|
T Consensus 119 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h 193 (345)
T 3fm0_A 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD----WVCCATLEGH 193 (345)
T ss_dssp EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE----EEEEEEECCC
T ss_pred EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCC
Confidence 999999999999999987652 23456678999999999999 89999999999999999998721 1355788999
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEEEec
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~s~s 450 (496)
...|.+++|+|++. +|++++.|+.|+|||+...+...............++..+.+ |...|.+++|+|++..++
T Consensus 194 ~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~---- 268 (345)
T 3fm0_A 194 ESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA---- 268 (345)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE----
T ss_pred CCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE----
Confidence 99999999999998 468999999999999765332221111111011133444555 888999999999887755
Q ss_pred CCCCCCCCCCeEEEeecCCCCcC--CchH-HHHHHHhccceEEEeccCC
Q 010997 451 DDCDSTGGGGTLQIWRMSDLIYR--PQDE-VLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~~~~--~~~~-~~~~l~~h~~~v~~~~~sP 496 (496)
+++.|+.|++|+....... +... ....+.+|...|.+|+|+|
T Consensus 269 ----s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 269 ----TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp ----EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred ----EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 4444599999998742110 0000 1123468999999999998
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.4e-40 Score=315.47 Aligned_cols=256 Identities=22% Similarity=0.346 Sum_probs=209.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
....+|.+.|++++|+| ++. +++++.||+|+|||+.++.... .......+|.. .|++++|+|++++|++
T Consensus 88 ~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~h~~-~V~~v~~spdg~~l~s 156 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLL--------VNKFAKYEHDD-IVKTLSVFSDGTQAVS 156 (357)
T ss_dssp SEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------C--------CCCEEECCCSS-CEEEEEECSSSSEEEE
T ss_pred cccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeE--------EEeeccCCCCC-CEEEEEECCCCCEEEE
Confidence 35568999999999999 665 4567889999999998763211 22234567887 7999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.||+|++||++++.. +..+.+|...|++++|+|++..+
T Consensus 157 gs~dg~v~iwd~~~~~~----------------------------------------~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 157 GGKDFSVKVWDLSQKAV----------------------------------------LKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EETTSCEEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEECTTCSSC
T ss_pred EeCCCeEEEEECCCCcE----------------------------------------EEEEcCCCCCEEEEEEccCCCce
Confidence 99999999999975432 36778899999999999998778
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
+++++.||+|++||+++++.........|...+++++|+|..+.+|++|+.|+.|++||+++ +.++..+.+|..
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~------~~~~~~~~~~~~ 270 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN------PDSAQTSAVHSQ 270 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC------GGGCEEECCCSS
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC------CcEeEEEeccce
Confidence 99999999999999998874333444567888999999995578999999999999999998 788999999999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
.|++++|+|++..+||+|+.|+.|+|||+... ++ ....+|.+.|++++|+|.+..+++|++.|
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~D- 333 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------EV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWD- 333 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------------EE-EEECCCSSCEEEEEECSSSTTEEEEEETT-
T ss_pred eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------------cE-eEECCCCCCEEEEEEeCCCCCEEEEEcCC-
Confidence 99999999998767889999999999999873 23 34458999999999999656667766554
Q ss_pred CCCCCCCeEEEeecCC
Q 010997 454 DSTGGGGTLQIWRMSD 469 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~~ 469 (496)
|+|++|++..
T Consensus 334 ------g~v~iW~~~~ 343 (357)
T 4g56_B 334 ------HKVLHHHLPS 343 (357)
T ss_dssp ------SCEEEEECC-
T ss_pred ------CeEEEEECCC
Confidence 9999999973
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=315.28 Aligned_cols=290 Identities=18% Similarity=0.291 Sum_probs=226.9
Q ss_pred CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP 174 (496)
Q Consensus 95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~ 174 (496)
++.+..++||+..-... ..+.....+|.+.|++++|+| ++++||+|+.|++|+|||+....
T Consensus 34 ~~~D~~i~iw~~~~~~~------------------~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 34 CGGDRRIRIWGTEGDSW------------------ICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDD 94 (345)
T ss_dssp EETTSCEEEEEEETTEE------------------EEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-
T ss_pred EcCCCeEEEEEcCCCcc------------------eeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCC
Confidence 34678899998642110 011122347999999999999 88999999999999999987651
Q ss_pred CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997 175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK 254 (496)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (496)
......+.+|.. .|.+++|+|++++|++|+.|++|++||+.....
T Consensus 95 ----------~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~------------------------ 139 (345)
T 3fm0_A 95 ----------FECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE------------------------ 139 (345)
T ss_dssp ----------EEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEECTTSC------------------------
T ss_pred ----------eEEEEEccCCCC-CceEEEEeCCCCEEEEEECCCeEEEEECCCCCC------------------------
Confidence 134567889988 699999999999999999999999999874321
Q ss_pred CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC
Q 010997 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334 (496)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~ 334 (496)
...+..+.+|...|.+++|+|++ .+|++++.|+.|++||++.+.......+.+|...|++++|+|
T Consensus 140 -------------~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp- 204 (345)
T 3fm0_A 140 -------------YECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP- 204 (345)
T ss_dssp -------------EEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-
T ss_pred -------------eEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-
Confidence 12235677899999999999998 789999999999999998876434567789999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCCCC---------CCCCceEecc-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 335 DDNLILTGSADNSVRMFDRRNLTSNG---------VGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 335 ~~~~l~sgs~dg~i~iwd~~~~~~~~---------~~~~~~~~~~-h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
++.+|++|+.||+|+|||........ ...++..+.+ |...|.+++|+|++.. |++++.|+.|++|+...
T Consensus 205 ~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAIRVFQEDP 283 (345)
T ss_dssp TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCEEEEEECT
T ss_pred CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeEEEEEeCC
Confidence 99999999999999999975432110 0122334444 8899999999999985 67999999999999876
Q ss_pred CCcccCCCCCCCCCCCe--eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 405 VGKKVEQGPRTTNYPAG--LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 405 ~~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
..... .+.. ....+.+|...|++++|+|+++.++||++.| |+|+||++..
T Consensus 284 ~~~~~--------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D-------g~v~~W~~~~ 335 (345)
T 3fm0_A 284 NSDPQ--------QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD-------GEVAFWKYQR 335 (345)
T ss_dssp TSCTT--------SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT-------SCEEEEEECC
T ss_pred CCCcc--------eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC-------CcEEEEEecC
Confidence 32211 1111 1223468999999999999988788877665 9999999984
No 16
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-39 Score=305.25 Aligned_cols=263 Identities=19% Similarity=0.280 Sum_probs=209.4
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 212 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~ 212 (496)
...+|.+.|++++|+| ++++||+|+.|++|+|||+... ..++...+.+|.+ .|++++|+++ +++|+
T Consensus 4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~----------~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA 71 (297)
T ss_dssp ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSS----------CBCCCEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCC----------CcEEEEEEccccC-CeEEEEecCCCcCCEEE
Confidence 3458999999999999 8999999999999999999753 1245678999998 7999999864 88999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--C
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S 290 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~ 290 (496)
||+.||+|++||++++.. ..+..+.+|...|.+++|+|+ +
T Consensus 72 s~s~D~~v~iWd~~~~~~--------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g 113 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG 113 (297)
T ss_dssp EEETTTEEEEEEBSSSCB--------------------------------------CCCEEECCCSSCEEEEEECCGGGC
T ss_pred EEcCCCEEEEEEcCCCce--------------------------------------EEEEEeecCCCceeEEEeCcCCCC
Confidence 999999999999975321 122556789999999999997 5
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC------------CcEEEEEcCCCcEEEEeCCCCCC
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD------------DNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~------------~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
.+|++++.|+.|++||++.........+.+|...|++++|+|.. +.+|++|+.|+.|++||++....
T Consensus 114 -~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~ 192 (297)
T 2pm7_B 114 -PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (297)
T ss_dssp -SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT
T ss_pred -cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc
Confidence 78999999999999999876422245567899999999999931 47999999999999999987210
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCC--CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 436 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~--~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 436 (496)
.......+.+|...|.+++|+|++ ..+||+++.|+.|+|||+...... ....+....+|...|.++
T Consensus 193 --~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~----------~~~~~~~~~~~~~~v~~~ 260 (297)
T 2pm7_B 193 --TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP----------WKKTLLKEEKFPDVLWRA 260 (297)
T ss_dssp --EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC----------CEEEESSSSCCSSCEEEE
T ss_pred --eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc----------cceeeeecccCCCcEEEE
Confidence 001566789999999999999986 346889999999999998763110 001111125678899999
Q ss_pred EecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+|+|++..++ +++.||+|+||+..
T Consensus 261 ~~s~~g~~la--------s~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 261 SWSLSGNVLA--------LSGGDNKVTLWKEN 284 (297)
T ss_dssp EECSSSCCEE--------EEETTSCEEEEEEC
T ss_pred EECCCCCEEE--------EEcCCCcEEEEEEC
Confidence 9999988755 44456999999987
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-39 Score=306.57 Aligned_cols=271 Identities=23% Similarity=0.387 Sum_probs=231.2
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.....+|.+.|++++|+| ++++||+|+.||.|+||++.++ +....+.+|.. .|.+++|+|++++|+
T Consensus 16 ~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG------------KFEKTISGHKL-GISDVAWSSDSNLLV 81 (312)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred EEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc------------ccchhhccCCC-ceEEEEEcCCCCEEE
Confidence 445678999999999999 8899999999999999999877 55667889987 699999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.||.|++||++++. .+..+.+|...|.+++|+|++ .
T Consensus 82 s~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~-~ 120 (312)
T 4ery_A 82 SASDDKTLKIWDVSSGK----------------------------------------CLKTLKGHSNYVFCCNFNPQS-N 120 (312)
T ss_dssp EEETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-S
T ss_pred EECCCCEEEEEECCCCc----------------------------------------EEEEEcCCCCCEEEEEEcCCC-C
Confidence 99999999999997542 236778899999999999998 7
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGH 371 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h 371 (496)
+|++|+.|+.|++||+++++ ....+..|...|.+++|+| ++.+|++|+.||.|++||+++ +..+..+ ..+
T Consensus 121 ~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~~~ 191 (312)
T 4ery_A 121 LIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS------GQCLKTLIDDD 191 (312)
T ss_dssp EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCSS
T ss_pred EEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CceeeEEeccC
Confidence 99999999999999999887 5677788999999999999 899999999999999999998 6666665 456
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc--eEEecCCCCcEEEEe
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWNASDPWTVVSV 449 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~~~~~p~~~~l~~s~ 449 (496)
...+..++|+|++.+ |++++.|+.|++||+... ..+..+.+|...+. ...+++.+..+++
T Consensus 192 ~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 253 (312)
T 4ery_A 192 NPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKG---------------KCLKTYTGHKNEKYCIFANFSVTGGKWIV-- 253 (312)
T ss_dssp CCCEEEEEECTTSSE-EEEEETTTEEEEEETTTT---------------EEEEEECSSCCSSSCCCEEEECSSSCEEE--
T ss_pred CCceEEEEECCCCCE-EEEEcCCCeEEEEECCCC---------------cEEEEEEecCCceEEEEEEEEeCCCcEEE--
Confidence 678999999999985 579999999999999874 45666777776543 3345544555565
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|+.||.|++||+. .++.+.++.+|...|.+++|+|
T Consensus 254 -----sg~~dg~i~vwd~~------~~~~~~~~~~h~~~v~~~~~~p 289 (312)
T 4ery_A 254 -----SGSEDNLVYIWNLQ------TKEIVQKLQGHTDVVISTACHP 289 (312)
T ss_dssp -----ECCTTSCEEEEETT------TCCEEEEECCCSSCEEEEEECS
T ss_pred -----EECCCCEEEEEECC------CchhhhhhhccCCcEEEEeecC
Confidence 55556999999998 5677888999999999999998
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.9e-40 Score=319.34 Aligned_cols=283 Identities=21% Similarity=0.356 Sum_probs=224.2
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC----------------
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ---------------- 195 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~---------------- 195 (496)
+..+.++|.+.|++++|+| ++++||+|+ ++.++||++.++.. ...+.+|.
T Consensus 56 ~~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~------------~~~l~~~~~~~~~~~~~~~~~~~~ 121 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSL------------VARLSDDSAANKDPENLNTSSSPS 121 (393)
T ss_dssp EEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCE------------EEEECC-----------------C
T ss_pred eeEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCE------------EEEecCccccccccccccccccCC
Confidence 3455678999999999999 889999987 68999999988732 22232221
Q ss_pred -CCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee
Q 010997 196 -DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY 274 (496)
Q Consensus 196 -~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (496)
...|.+++|+|++++|++|+.|++|++||+.++. .+..+
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~----------------------------------------~~~~~ 161 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK----------------------------------------IVMIL 161 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE----------------------------------------EEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----------------------------------------EEEEE
Confidence 1148899999999999999999999999997542 23667
Q ss_pred ecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 275 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~ 354 (496)
.+|...|.+++|+|++ .+|++++.|++|++||+++++ ....+ .+...+.+++|+|.++.+|++|+.||.|++||++
T Consensus 162 ~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 162 QGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred ccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe--eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 8899999999999998 789999999999999999876 34443 4678899999999778999999999999999999
Q ss_pred CCCCCCCCCCceEe-------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997 355 NLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (496)
Q Consensus 355 ~~~~~~~~~~~~~~-------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (496)
+ +..+..+ .+|...|.+++|+|++.. |++|+.|+.|++||+.......... ......+...+.
T Consensus 238 ~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd~~~~~~~~~~~---~~~~~~~~~~~~ 307 (393)
T 1erj_A 238 T------GFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSK---TPNSGTCEVTYI 307 (393)
T ss_dssp T------CCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC------------------CEEEEEE
T ss_pred C------CcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEECCCCCCccccc---CCCCCcceEEEe
Confidence 8 5666555 579999999999999985 6799999999999998642211100 001123556678
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|...|.+++|+|++.+++ +|+.||.|++||+. .++.+..+.+|.+.|.+++|+|
T Consensus 308 ~h~~~v~~~~~~~~~~~l~--------sgs~D~~v~iwd~~------~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 308 GHKDFVLSVATTQNDEYIL--------SGSKDRGVLFWDKK------SGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp CCSSCEEEEEECGGGCEEE--------EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECS
T ss_pred cccCcEEEEEECCCCCEEE--------EEeCCCeEEEEECC------CCeEEEEECCCCCCEEEEEecC
Confidence 9999999999999887655 45556999999998 5677788899999999999875
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-39 Score=306.47 Aligned_cols=279 Identities=16% Similarity=0.291 Sum_probs=225.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..+.+|.+.|++++|+|.++++|++|+.|++|++||+....... ..+...+.+|.. .|.+++|+|++++|++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-------~~~~~~~~~h~~-~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-------GVPVRSFKGHSH-IVQDCTLTADGAYALS 82 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-------EEEEEEEECCSS-CEEEEEECTTSSEEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-------cccceEEeCCcc-cEEEEEECCCCCEEEE
Confidence 34568999999999999677899999999999999987542111 135668899998 7999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.|++|++||+.++.. +..+.+|...|.+++|+|++ .+
T Consensus 83 ~s~D~~v~~wd~~~~~~----------------------------------------~~~~~~h~~~v~~~~~~~~~-~~ 121 (319)
T 3frx_A 83 ASWDKTLRLWDVATGET----------------------------------------YQRFVGHKSDVMSVDIDKKA-SM 121 (319)
T ss_dssp EETTSEEEEEETTTTEE----------------------------------------EEEEECCSSCEEEEEECTTS-CE
T ss_pred EeCCCEEEEEECCCCCe----------------------------------------eEEEccCCCcEEEEEEcCCC-CE
Confidence 99999999999975432 36788999999999999998 79
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-----CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-----~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
|++|+.|++|++||++.. ....+.+|...|.+++|+|. ++.+|++|+.|+.|++||+++ ......+
T Consensus 122 l~s~s~D~~i~vwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~ 192 (319)
T 3frx_A 122 IISGSRDKTIKVWTIKGQ---CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADF 192 (319)
T ss_dssp EEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEE
T ss_pred EEEEeCCCeEEEEECCCC---eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheee
Confidence 999999999999999743 45667799999999999983 234899999999999999998 6778889
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
.+|...|.+++|+|++. +|++|+.||.|+|||+... ..+..+..+ ..|.+++|+|++.+++ +
T Consensus 193 ~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~-~~v~~~~~sp~~~~la-~ 254 (319)
T 3frx_A 193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ-DEVFSLAFSPNRYWLA-A 254 (319)
T ss_dssp CCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTT---------------EEEEEEECC-SCEEEEEECSSSSEEE-E
T ss_pred cCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---------------cEEEEecCC-CcEEEEEEcCCCCEEE-E
Confidence 99999999999999998 5689999999999999874 445555544 5799999999876554 3
Q ss_pred ecCCCCCCCCCCeEEEeecCCCCcCCc--hHHHHHHHhccceEEEeccCC
Q 010997 449 VSDDCDSTGGGGTLQIWRMSDLIYRPQ--DEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~sP 496 (496)
++. +.+++|++........ .........|...|.+++|+|
T Consensus 255 ~~~--------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 296 (319)
T 3frx_A 255 ATA--------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296 (319)
T ss_dssp EET--------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred EcC--------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC
Confidence 332 5699999874211000 011112245677899999998
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7e-39 Score=306.38 Aligned_cols=248 Identities=21% Similarity=0.325 Sum_probs=211.2
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
.....|.+.|.+++|+| ++++||+|+.|+.|++||+.+... ..+....+.+|.. .|.++.|++++. |++
T Consensus 91 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~--------~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s 159 (340)
T 1got_B 91 HAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREG--------NVRVSRELAGHTG-YLSCCRFLDDNQ-IVT 159 (340)
T ss_dssp EEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSB--------SCEEEEEEECCSS-CEEEEEEEETTE-EEE
T ss_pred eEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCC--------cceeEEEecCCCc-cEEEEEECCCCc-EEE
Confidence 34567999999999999 889999999999999999987521 1134457889987 689999998775 899
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.|++|++||+.++. .+..+.+|...|.+++|+|++ .+
T Consensus 160 ~s~d~~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~ 198 (340)
T 1got_B 160 SSGDTTCALWDIETGQ----------------------------------------QTTTFTGHTGDVMSLSLAPDT-RL 198 (340)
T ss_dssp EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS-SE
T ss_pred EECCCcEEEEECCCCc----------------------------------------EEEEEcCCCCceEEEEECCCC-CE
Confidence 9999999999997543 236678899999999999998 79
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc--C
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--H 371 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~--h 371 (496)
|++|+.|+.|++||++++. ....+.+|...|++++|+| ++.+|++|+.||+|++||++. ...+..+.. +
T Consensus 199 l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~~~~~ 269 (340)
T 1got_B 199 FVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNI 269 (340)
T ss_dssp EEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTC
T ss_pred EEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC------CcEEEEEccCCc
Confidence 9999999999999999887 6677889999999999999 999999999999999999998 556666542 3
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
...|.+++|+|++. +|++|+.|+.|++||+... ..+..+.+|...|.+++|+|++.+++
T Consensus 270 ~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~s~dg~~l~----- 328 (340)
T 1got_B 270 ICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA---------------DRAGVLAGHDNRVSCLGVTDDGMAVA----- 328 (340)
T ss_dssp CSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTSSCEE-----
T ss_pred ccceEEEEECCCCC-EEEEECCCCeEEEEEcccC---------------cEeeEeecCCCcEEEEEEcCCCCEEE-----
Confidence 45799999999998 5679999999999999874 45667889999999999999887655
Q ss_pred CCCCCCCCCeEEEee
Q 010997 452 DCDSTGGGGTLQIWR 466 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~ 466 (496)
|||.||+|+|||
T Consensus 329 ---s~s~D~~i~iWd 340 (340)
T 1got_B 329 ---TGSWDSFLKIWN 340 (340)
T ss_dssp ---EEETTSCEEEEC
T ss_pred ---EEcCCccEEecC
Confidence 555569999996
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.2e-38 Score=294.93 Aligned_cols=285 Identities=20% Similarity=0.314 Sum_probs=233.6
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
+..++.|.|+ ...|+. ++.+..+.||+.... ........|...|.+
T Consensus 15 ~V~~~~fsp~--------~~~l~s-----~~~dg~v~lWd~~~~---------------------~~~~~~~~~~~~v~~ 60 (304)
T 2ynn_A 15 RVKGIDFHPT--------EPWVLT-----TLYSGRVELWNYETQ---------------------VEVRSIQVTETPVRA 60 (304)
T ss_dssp CEEEEEECSS--------SSEEEE-----EETTSEEEEEETTTT---------------------EEEEEEECCSSCEEE
T ss_pred ceEEEEECCC--------CCEEEE-----EcCCCcEEEEECCCC---------------------ceeEEeeccCCcEEE
Confidence 4457777775 123333 236778999975320 122345579999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~ 225 (496)
++|+| ++++|++|+.|+.|++||+.++ +....+.+|.+ .|.+++|+|++++|++|+.||+|++||+
T Consensus 61 ~~~~~-~~~~l~s~s~d~~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 61 GKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (304)
T ss_dssp EEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred EEEeC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEeCCCC-cEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence 99999 8899999999999999999988 66778999998 6999999999999999999999999998
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (496)
+++.. ....+.+|...|.+++|+|.++.+|++|+.|++|++
T Consensus 127 ~~~~~---------------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 127 ENNWA---------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp GGTTE---------------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred CCCcc---------------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 75311 125678899999999999965589999999999999
Q ss_pred EEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997 306 WDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (496)
Q Consensus 306 wd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~ 384 (496)
||++.... .......|...+..++|+|. ++.+|++|+.|++|++||+++ +.++.++.+|...|.+++|+|++
T Consensus 168 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 168 WSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp EETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSS
T ss_pred EECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC------CccceeeCCCCCCEEEEEECCCC
Confidence 99987763 33344467788999999873 567999999999999999998 78899999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc-EEEEecCCCCCCCCCCeEE
Q 010997 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQ 463 (496)
Q Consensus 385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~-l~~s~s~d~~sgg~Dg~i~ 463 (496)
. +|++|+.||.|+|||+.+. .++..+..|...+.+++|+|++.. +++++++ +.+.
T Consensus 241 ~-~l~s~s~Dg~i~iWd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~--------~g~~ 296 (304)
T 2ynn_A 241 P-IIISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFD--------NGFT 296 (304)
T ss_dssp S-EEEEEETTSCEEEEETTTC---------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEET--------TEEE
T ss_pred C-EEEEEcCCCeEEEEECCCC---------------ceeeeccCCCccEEEEEECCCCCceEEEEecC--------CceE
Confidence 8 5789999999999999875 566677889999999999998864 4665554 5688
Q ss_pred EeecC
Q 010997 464 IWRMS 468 (496)
Q Consensus 464 iw~~~ 468 (496)
+|++.
T Consensus 297 ~~~~~ 301 (304)
T 2ynn_A 297 VLSLG 301 (304)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 89887
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-39 Score=305.38 Aligned_cols=290 Identities=17% Similarity=0.265 Sum_probs=215.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ec-CCCCcceeeeecCCCCce
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TG-HQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~-h~~~~v~~l~~~p~~~~l 211 (496)
..+.+|.+.|++++|+| + +||+|+.||.|+|||+.... ......+ .+ |.. .|.+++|+|++++|
T Consensus 8 ~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~----------~~~~~~~~~~~h~~-~v~~v~~sp~~~~l 73 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDD----------FTLIDVLDETAHKK-AIRSVAWRPHTSLL 73 (330)
T ss_dssp EEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSC----------CEEEEEECTTCCCS-CEEEEEECTTSSEE
T ss_pred eeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCC----------eEEEEEEecCCccC-CEEEEEECCCCCEE
Confidence 34568999999999998 4 99999999999999998651 1223344 34 776 79999999999999
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
++|+.|++|++||+...... ......+..+.+|...|.+++|+|++
T Consensus 74 as~s~D~~v~iw~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g- 119 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADR---------------------------------TFEMDLLAIIEGHENEVKGVAWSNDG- 119 (330)
T ss_dssp EEEETTSCEEEEEC----------------------------------------CCCEEEEEEC----CEEEEEECTTS-
T ss_pred EEEeCCCcEEEEEcccCcCc---------------------------------cccceeEEEEcCCCCcEEEEEECCCC-
Confidence 99999999999998642110 01123346788999999999999998
Q ss_pred ceEEEEcCCCeEEEEEccCCC--ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 292 QEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
.+|++|+.|++|++||++... ......+.+|...|.+++|+| ++.+|++|+.|++|++||.+... ..++..+.
T Consensus 120 ~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~ 194 (330)
T 2hes_X 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD----WECVAVLN 194 (330)
T ss_dssp CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE----EEEEEEEC
T ss_pred CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC----eeEEEEcc
Confidence 799999999999999995432 124556778999999999999 89999999999999999988621 25788899
Q ss_pred cCCCCEEEEEEcCCC-CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEE
Q 010997 370 GHSAAVLCVQWSPDK-SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~-~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~ 447 (496)
+|...|.+++|+|++ ..+|++|+.|+.|++||+........ ........+.+ |...|.+++|++++ +++
T Consensus 195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~ 265 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ-------QEWVCEAILPDVHKRQVYNVAWGFNG--LIA 265 (330)
T ss_dssp CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC-------EEEEEEEECCSCCSSCEEEEEECTTS--CEE
T ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc-------ceeEEeeecccccccceEEEEEcCCC--EEE
Confidence 999999999999983 23578999999999999976311000 00123333444 89999999999754 455
Q ss_pred EecCCCCCCCCCCeEEEeecCCCCcCCchHHH-HHHHhccc-eEEEeccCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL-AELEKFKA-HVISCTSKP 496 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~-~~l~~h~~-~v~~~~~sP 496 (496)
+++. ||+|+||++... ..+.+ ..+.+|.. .|.+++|+|
T Consensus 266 s~~~-------dg~v~iw~~~~~----~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 266 SVGA-------DGVLAVYEEVDG----EWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp EEET-------TSCEEEEEEETT----EEEEEEEESCTTTTSCEEEEEEC-
T ss_pred EEeC-------CCEEEEEEcCCC----ceEEEeccccccccceEEEEEEec
Confidence 5444 599999998731 00111 22356877 899999987
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-37 Score=299.09 Aligned_cols=270 Identities=19% Similarity=0.289 Sum_probs=222.6
Q ss_pred CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP 174 (496)
Q Consensus 95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~ 174 (496)
++.+..+.||+.... ........|...|.+++|+| ++.+||+|+.|+.+++|++....
T Consensus 82 ~s~Dg~v~vWd~~~~---------------------~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 82 SSQDGKVIVWDSFTT---------------------NKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp EETTSEEEEEETTTC---------------------CEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCT
T ss_pred EeCCCeEEEEECCCC---------------------CcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccc
Confidence 357788999974210 12234456888999999999 88999999999999999987652
Q ss_pred CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997 175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK 254 (496)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (496)
... .......+.+|.. .|.+++|+|++.+|++|+.|++|++||++++.
T Consensus 140 ~~~------~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~------------------------- 187 (354)
T 2pbi_B 140 NEN------MAAKKKSVAMHTN-YLSACSFTNSDMQILTASGDGTCALWDVESGQ------------------------- 187 (354)
T ss_dssp TCC------SGGGCEEEEECSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------------------
T ss_pred ccc------ccccceeeeccCC-cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-------------------------
Confidence 211 1134567788987 69999999999999999999999999997543
Q ss_pred CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecC
Q 010997 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 333 (496)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp 333 (496)
.+..+.+|...|.+++|+|.. +.+|++|+.||.|++||+++++ ....+..|...|++++|+|
T Consensus 188 ---------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 188 ---------------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYP 250 (354)
T ss_dssp ---------------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT
T ss_pred ---------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeC
Confidence 246788999999999998852 2799999999999999999987 6777889999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC--CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411 (496)
Q Consensus 334 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~ 411 (496)
++.+|++|+.|++|++||++. ...+..+..+ ...+.+++|+|++. +|++|+.|+.|++||+...
T Consensus 251 -~~~~l~s~s~D~~v~lwd~~~------~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~------ 316 (354)
T 2pbi_B 251 -SGDAFASGSDDATCRLYDLRA------DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKG------ 316 (354)
T ss_dssp -TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC------
T ss_pred -CCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCC------
Confidence 899999999999999999998 5555555433 45789999999998 5679999999999999774
Q ss_pred CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997 412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 466 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~ 466 (496)
..+..+.+|...|++++|+|++.+++ ||+.||+|+||+
T Consensus 317 ---------~~~~~l~~h~~~v~~l~~spdg~~l~--------sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 ---------SRVSILFGHENRVSTLRVSPDGTAFC--------SGSWDHTLRVWA 354 (354)
T ss_dssp ---------SEEEEECCCSSCEEEEEECTTSSCEE--------EEETTSEEEEEC
T ss_pred ---------ceEEEEECCCCcEEEEEECCCCCEEE--------EEcCCCCEEecC
Confidence 45667789999999999999988765 555569999996
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-39 Score=331.83 Aligned_cols=314 Identities=14% Similarity=0.190 Sum_probs=230.5
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe-------cCCCCcceeeeecCC
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-------GHQDNAEFALAMCPT 207 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~~v~~l~~~p~ 207 (496)
.+.+|.+.|++++|+| ++++||+|+.||+|+|||+.++ +....+. +|.+ .|++++|+|+
T Consensus 185 ~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g------------~~~~~~~~~~~~~~~h~~-~V~~v~~spd 250 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG------------TKTGVFEDDSLKNVAHSG-SVFGLTWSPD 250 (611)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEECBCTTSSSCSSSS-CEEEEEECTT
T ss_pred eeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC------------cEeeeeccccccccccCC-CEEEEEECCC
Confidence 4568999999999999 8899999999999999999877 2333342 7887 7999999999
Q ss_pred CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceec----cCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK----QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
+++|++|+.|++|++||+.++............ ......+.. ......++.+.+|+.........+.+|...|++
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc-cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence 999999999999999999876543221110000 000000000 001123455666776666677788899999999
Q ss_pred EEEccCCCceEEEEcCCCeEEEEEccCCCcccee----------------------------------------------
Q 010997 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK---------------------------------------------- 317 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------------------------------- 317 (496)
++|+|++ .+|++++.|++|++||+.++......
T Consensus 330 l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 408 (611)
T 1nr0_A 330 LSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408 (611)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeee
Confidence 9999998 79999999999999998765310000
Q ss_pred ----------------------------------eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997 318 ----------------------------------VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 318 ----------------------------------~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 363 (496)
....|...+.+++|+| ++.+||+|+.|++|++||+.... ..
T Consensus 409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~----~~ 483 (611)
T 1nr0_A 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGAS----VS 483 (611)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTE----EE
T ss_pred ecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCc----ee
Confidence 0001335578999999 99999999999999999998611 11
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~ 443 (496)
.+.. .+|...|++++|+|++.+ ||+++.|+.|++||+...++... .....+|...|.+++|+|++.
T Consensus 484 ~~~~-~~h~~~v~~v~fspdg~~-las~s~d~~v~~w~~~~~~~~~~------------~~~~~~H~~~V~~v~fspdg~ 549 (611)
T 1nr0_A 484 EVKT-IVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFELAH------------TNSWTFHTAKVACVSWSPDNV 549 (611)
T ss_dssp EEEE-EECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEESC------------CCCCCCCSSCEEEEEECTTSS
T ss_pred eeec-cCCCCceEEEEECCCCCE-EEEEcCCCCEEEEEcCCCCceee------------eeeeeecccceeEEEECCCCC
Confidence 2233 679999999999999994 68999999999999976322110 001245999999999999887
Q ss_pred cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHH-HHHHhc-cceEEEeccCC
Q 010997 444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL-AELEKF-KAHVISCTSKP 496 (496)
Q Consensus 444 ~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~-~~l~~h-~~~v~~~~~sP 496 (496)
++ | ||+.|++|+||++... .+.+ ..+.+| ...|.+++|+|
T Consensus 550 ~l-a-------sgs~D~~v~lW~~~~~-----~~~~~~~~~~h~~~~v~~v~fs~ 591 (611)
T 1nr0_A 550 RL-A-------TGSLDNSVIVWNMNKP-----SDHPIIIKGAHAMSSVNSVIWLN 591 (611)
T ss_dssp EE-E-------EEETTSCEEEEETTCT-----TSCCEEETTSSTTSCEEEEEEEE
T ss_pred EE-E-------EEECCCcEEEEECCCc-----ccccchhhccCcccCeeEEEEcC
Confidence 65 4 4555699999999832 1122 456789 89999999986
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.4e-39 Score=329.99 Aligned_cols=284 Identities=17% Similarity=0.273 Sum_probs=226.5
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|.+.|++++|+| ++++||+|+.||+|+|||+.+.. ......+.+|.. .|.+++|+|++++|+++
T Consensus 54 ~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~----------~~~~~~~~~~~~-~v~~v~fs~dg~~l~~~ 121 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTT----------HILKTTIPVFSG-PVKDISWDSESKRIAAV 121 (611)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTT----------CCEEEEEECSSS-CEEEEEECTTSCEEEEE
T ss_pred EecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCc----------ceeeEeecccCC-ceEEEEECCCCCEEEEE
Confidence 4468999999999999 89999999999999999997541 123457788987 79999999999999988
Q ss_pred cCC----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 215 GKD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 215 ~~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+.+ +.|++||.... ...+.+|...|++++|+|++
T Consensus 122 ~~~~~~~~~v~~wd~~~~------------------------------------------~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 122 GEGRERFGHVFLFDTGTS------------------------------------------NGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp ECCSSCSEEEEETTTCCB------------------------------------------CBCCCCCSSCEEEEEECSSS
T ss_pred ECCCCceeEEEEeeCCCC------------------------------------------cceecCCCCCceEEEECCCC
Confidence 865 47888885321 14567899999999999998
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 369 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~- 369 (496)
+..|++|+.|++|++||.+..+ ....+.+|...|++++|+| ++.+||+|+.|++|++||+.+ +..+..+.
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~------g~~~~~~~~ 230 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD------GTKTGVFED 230 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEECBC
T ss_pred CeEEEEEeCCCeEEEEECCCCe--EeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCC------CcEeeeecc
Confidence 6679999999999999987765 5667889999999999999 999999999999999999988 66777773
Q ss_pred ------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC----------------------------
Q 010997 370 ------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT---------------------------- 415 (496)
Q Consensus 370 ------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~---------------------------- 415 (496)
+|.+.|.+++|+|++. +|++++.|+.|+|||+.............
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred ccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence 7999999999999998 46899999999999998742211100000
Q ss_pred CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEecc
Q 010997 416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTS 494 (496)
Q Consensus 416 ~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~ 494 (496)
+.........+.+|...|++++|+|++.+++ |++.|++|++||+.. ++....+ .+|...|.+++|
T Consensus 310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~--------s~s~D~~v~~Wd~~~------~~~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 310 NPELGSIDQVRYGHNKAITALSSSADGKTLF--------SADAEGHINSWDIST------GISNRVFPDVHATMITGIKT 375 (611)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTT------CCEEECSSCSCSSCEEEEEE
T ss_pred eCCCCCcceEEcCCCCCEEEEEEeCCCCEEE--------EEeCCCcEEEEECCC------CceeeecccCCcceEEEEEE
Confidence 0001124456679999999999999887654 444569999999983 3333333 578899999998
Q ss_pred CC
Q 010997 495 KP 496 (496)
Q Consensus 495 sP 496 (496)
+|
T Consensus 376 s~ 377 (611)
T 1nr0_A 376 TS 377 (611)
T ss_dssp CT
T ss_pred CC
Confidence 75
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-38 Score=304.74 Aligned_cols=283 Identities=17% Similarity=0.257 Sum_probs=218.0
Q ss_pred EEEecCCCceeEEEe-----cCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997 134 HKTIIHPGEVNRIRE-----LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~-----~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~ 208 (496)
..+.+|.+.|++++| ++.++.+||+|+.|++|+|||+........ ...+...+.+|.. .|.+++|+|++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~~~~~~~l~~h~~-~V~~~~~~~~~ 88 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKALTGHNH-FVSDLALSQEN 88 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----SEEEEEEECCCSS-CEEEEEECSST
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----cccccchhccCCC-ceEEEEECCCC
Confidence 356689999999999 666888999999999999999976521110 1134567889988 69999999999
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
.+|++|+.|++|++||++++. .+..+.+|...|.+++|+|
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~sp 128 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGT----------------------------------------TYKRFVGHQSEVYSVAFSP 128 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSC----------------------------------------EEEEEECCCSCEEEEEECS
T ss_pred CEEEEEcCCCcEEEEECCCCc----------------------------------------EEEEEcCCCCcEEEEEECC
Confidence 999999999999999997542 2367889999999999999
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC----------cEEEEEcCCCcEEEEeCCCCCC
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----------NLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~----------~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
++ .+|++++.|++|++||++............|...|.+++|+| ++ .+|++++.||.|++||..
T Consensus 129 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---- 202 (343)
T 2xzm_R 129 DN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN---- 202 (343)
T ss_dssp ST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT----
T ss_pred CC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC----
Confidence 98 789999999999999997432111111236889999999999 54 799999999999999954
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
......+.+|...|.+++|+|++.+ ||+|+.||.|++||+...... ... + .+...|.+++|
T Consensus 203 ---~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iwd~~~~~~~------------~~~--~-~~~~~v~~v~~ 263 (343)
T 2xzm_R 203 ---FQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTYP------------QRE--F-DAGSTINQIAF 263 (343)
T ss_dssp ---TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEEESSCCSSC------------SEE--E-ECSSCEEEEEE
T ss_pred ---CceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEEECCCCccc------------cee--e-cCCCcEEEEEE
Confidence 4677888999999999999999985 679999999999999543211 111 1 23456999999
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC-------chHHHHHHHhccceEEEeccCC
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP-------QDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~-------~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|++.+ ++++ . |+.|++|++....... .........+|...|.+++|+|
T Consensus 264 sp~~~~-la~~-~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 264 NPKLQW-VAVG-T-------DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp CSSSCE-EEEE-E-------SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred CCCCCE-EEEE-C-------CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 998764 4332 2 4789999997432111 0001112237888999999998
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-38 Score=309.65 Aligned_cols=280 Identities=22% Similarity=0.344 Sum_probs=220.5
Q ss_pred CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP 174 (496)
Q Consensus 95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~ 174 (496)
++.+..++||+... .........|...|.+++|+| ++++||+|+.|+.|+|||+....
T Consensus 84 ~s~D~~v~iWd~~~---------------------~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 84 ASQDGRLIVWNALT---------------------SQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp EETTSEEEEEETTT---------------------TEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCS
T ss_pred EeCCCeEEEEECCC---------------------CccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCc
Confidence 45678899987421 012345568999999999999 88999999999999999997652
Q ss_pred CccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCC
Q 010997 175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 253 (496)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (496)
... ........+.+|.+ .|.++.|.|++ .+|++|+.|++|++||+.++........
T Consensus 142 ~~~-----~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------------- 198 (380)
T 3iz6_a 142 DRD-----GNMPVSRVLTGHKG-YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS----------------- 198 (380)
T ss_dssp SCC-----CSSTTCCBCCCCSS-CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-----------------
T ss_pred ccc-----CCccceeeccCCCc-ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-----------------
Confidence 211 11234456789988 68999999974 5799999999999999986543211100
Q ss_pred CCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecC
Q 010997 254 KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 333 (496)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp 333 (496)
....+|...|.+++|++.++.+|++|+.|++|++||++.... ....+.+|...|++++|+|
T Consensus 199 ------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 199 ------------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp ------------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECT
T ss_pred ------------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEec
Confidence 112478899999999885558999999999999999985432 4566789999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC-------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010997 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (496)
Q Consensus 334 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~ 406 (496)
++.+|++|+.||+|++||+++ +..+..+..+. ..|++++|+|++.+ |++|+.||.|++||+...
T Consensus 260 -~~~~l~s~s~D~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~- 330 (380)
T 3iz6_a 260 -DGQRFGTGSDDGTCRLFDMRT------GHQLQVYNREPDRNDNELPIVTSVAFSISGRL-LFAGYSNGDCYVWDTLLA- 330 (380)
T ss_dssp -TSSEEEEECSSSCEEEEETTT------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-EEEECTTSCEEEEETTTC-
T ss_pred -CCCeEEEEcCCCeEEEEECCC------CcEEEEecccccccccccCceEEEEECCCCCE-EEEEECCCCEEEEECCCC-
Confidence 999999999999999999998 66666665432 34899999999994 679999999999998764
Q ss_pred cccCCCCCCCCCCCeeEEEe----cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 407 KKVEQGPRTTNYPAGLFFQH----AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
..+..+ .+|.+.|++++|+|++.+++ |||.||+|+||++..
T Consensus 331 --------------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--------sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 331 --------------EMVLNLGTLQNSHEGRISCLGLSSDGSALC--------TGSWDKNLKIWAFSG 375 (380)
T ss_dssp --------------CEEEEECCSCSSCCCCCCEEEECSSSSEEE--------EECTTSCEEEEECCS
T ss_pred --------------ceEEEEecccCCCCCceEEEEECCCCCEEE--------EeeCCCCEEEEecCC
Confidence 223333 68999999999999888655 566679999999983
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-38 Score=299.75 Aligned_cols=264 Identities=19% Similarity=0.300 Sum_probs=197.5
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
+|.+.|++++|+| ++++||+|+.|++|+|||+....... ....+...+.+|.. .|.+++|+|++++|++|+.|
T Consensus 56 ~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D 128 (330)
T 2hes_X 56 AHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRT-----FEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRD 128 (330)
T ss_dssp CCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT
T ss_pred CccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCcc-----ccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCC
Confidence 3999999999999 88999999999999999986431100 01244567889988 69999999999999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
++|++||+.... .....+..+.+|...|.+++|+|++ .+|++|
T Consensus 129 ~~v~iwd~~~~~------------------------------------~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~ 171 (330)
T 2hes_X 129 KSVWIWETDESG------------------------------------EEYECISVLQEHSQDVKHVIWHPSE-ALLASS 171 (330)
T ss_dssp SCEEEEECCTTC------------------------------------CCCEEEEEECCCSSCEEEEEECSSS-SEEEEE
T ss_pred CEEEEEeccCCC------------------------------------CCeEEEEEeccCCCceEEEEECCCC-CEEEEE
Confidence 999999985321 1112346678899999999999998 799999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEEcCCCcEEEEeCCCCCCCCC--CCCceEecc-CC
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGV--GSPINKFEG-HS 372 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~dg~i~iwd~~~~~~~~~--~~~~~~~~~-h~ 372 (496)
+.|++|++||++.+.......+.+|...|.+++|+| + +.+|++|+.|++|++||++....... ..+...+.. |.
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 999999999998764335667789999999999999 6 67899999999999999976211000 023444544 89
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE-EEecCCCC-CcceEEecCC-CCcEEEEe
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF-FQHAGHRD-KVVDFHWNAS-DPWTVVSV 449 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~-~V~~~~~~p~-~~~l~~s~ 449 (496)
..|.+++|++++ +|++++.||.|+|||+.... ...+ ....+|.. .|.+++|+|. +..++||+
T Consensus 251 ~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~-------------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 251 RQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE-------------WKVFAKRALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp SCEEEEEECTTS--CEEEEETTSCEEEEEEETTE-------------EEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred cceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc-------------eEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence 999999999765 46799999999999986521 1122 23467887 8999999994 33456655
Q ss_pred cCCCCCCCCCCeEEEeecC
Q 010997 450 SDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~ 468 (496)
+. ||+|+||++.
T Consensus 316 s~-------Dg~v~~W~~~ 327 (330)
T 2hes_X 316 GD-------DGIVNFWSLE 327 (330)
T ss_dssp ET-------TSEEEEEEC-
T ss_pred cC-------CCcEEEEEec
Confidence 54 5999999987
No 29
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.2e-37 Score=292.04 Aligned_cols=268 Identities=15% Similarity=0.273 Sum_probs=218.4
Q ss_pred CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP 174 (496)
Q Consensus 95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~ 174 (496)
++.+..+++|++..... ..........+|.+.|++++|+| ++.+|++|+.|++|+|||+.++
T Consensus 36 ~s~D~~v~~W~~~~~~~----------------~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~- 97 (319)
T 3frx_A 36 ASRDKTLISWKLTGDDQ----------------KFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATG- 97 (319)
T ss_dssp EETTSEEEEEEEEEETT----------------EEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-
T ss_pred ecCCccEEEecCCCCCc----------------cccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCC-
Confidence 45788999998753111 00112345568999999999999 8899999999999999999887
Q ss_pred CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997 175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK 254 (496)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (496)
+....+.+|.. .|.+++|+|++.+|++|+.|++|++||++..
T Consensus 98 -----------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-------------------------- 139 (319)
T 3frx_A 98 -----------ETYQRFVGHKS-DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-------------------------- 139 (319)
T ss_dssp -----------EEEEEEECCSS-CEEEEEECTTSCEEEEEETTSCEEEEETTSC--------------------------
T ss_pred -----------CeeEEEccCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------
Confidence 66778899998 6999999999999999999999999998632
Q ss_pred CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-----CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEE
Q 010997 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-----AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV 329 (496)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i 329 (496)
.+..+.+|...|.++.|+|.. ...|++++.|+.|++||++..+ ....+.+|...|+++
T Consensus 140 ---------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~ 202 (319)
T 3frx_A 140 ---------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTL 202 (319)
T ss_dssp ---------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEE
T ss_pred ---------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEE
Confidence 135677899999999999853 2489999999999999998876 566677999999999
Q ss_pred EecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCccc
Q 010997 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 409 (496)
Q Consensus 330 ~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~ 409 (496)
+|+| ++.+|++|+.||.|++||+++ +.++..+.. ...|.+++|+|++. +|++++ ++.+++|++...
T Consensus 203 ~~sp-~g~~l~s~~~dg~i~iwd~~~------~~~~~~~~~-~~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~~~---- 268 (319)
T 3frx_A 203 TASP-DGTLIASAGKDGEIMLWNLAA------KKAMYTLSA-QDEVFSLAFSPNRY-WLAAAT-ATGIKVFSLDPQ---- 268 (319)
T ss_dssp EECT-TSSEEEEEETTCEEEEEETTT------TEEEEEEEC-CSCEEEEEECSSSS-EEEEEE-TTEEEEEEETTE----
T ss_pred EEcC-CCCEEEEEeCCCeEEEEECCC------CcEEEEecC-CCcEEEEEEcCCCC-EEEEEc-CCCcEEEEeCcC----
Confidence 9999 999999999999999999998 677888875 46899999999998 456666 456999998763
Q ss_pred CCCCCCCCCCCeeEEEe--------cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 410 EQGPRTTNYPAGLFFQH--------AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 410 ~~~~~~~~~~~~~~~~~--------~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.++..+ ..|...|.+++|+|++.+++ +|+.||.|+||++.
T Consensus 269 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 269 -----------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF--------AGYTDNVIRVWQVM 316 (319)
T ss_dssp -----------EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE--------EEETTSCEEEEEEE
T ss_pred -----------eeeeccCccccccccCcCcceeEEEECCCCCEEE--------EeecCceEEEEEEe
Confidence 111111 23566789999999988765 45556999999986
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-38 Score=308.36 Aligned_cols=286 Identities=17% Similarity=0.312 Sum_probs=225.9
Q ss_pred CCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 010997 96 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 175 (496)
Q Consensus 96 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~ 175 (496)
+.+..+.||++..... .+....+.|.+.|++++|+| ++.+||+|+.||.|++||+.....
T Consensus 42 ~~d~~v~iw~~~~~~~-------------------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~ 101 (416)
T 2pm9_A 42 STDSSLELWSLLAADS-------------------EKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANN 101 (416)
T ss_dssp CCCCCCEEEESSSGGG-------------------CSCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTS
T ss_pred CCCCeEEEEEccCCCC-------------------CcEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccc
Confidence 6788899998643110 01223457899999999999 888999999999999999987311
Q ss_pred ccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997 176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK 254 (496)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (496)
.......+.+|.. .|.+++|+|+ +++|++|+.||.|++||+.+........
T Consensus 102 --------~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------- 153 (416)
T 2pm9_A 102 --------AINSMARFSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------------------- 153 (416)
T ss_dssp --------CCCEEEECCCSSS-CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------------------
T ss_pred --------cccchhhccCCcc-ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------------------
Confidence 0135667888987 6999999998 8899999999999999998653110000
Q ss_pred CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC------CCCeEE
Q 010997 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH------DADLHC 328 (496)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~ 328 (496)
.......+..|...|.+++|+|++..+|++++.||.|++||+++++ ....+..+ ...|.+
T Consensus 154 ------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 154 ------------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp ------------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEE
T ss_pred ------------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEE
Confidence 0001123457889999999999965899999999999999999876 44455444 789999
Q ss_pred EEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEECC
Q 010997 329 VDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYE 403 (496)
Q Consensus 329 i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd~~ 403 (496)
++|+|....+|++++.|+ .|++||+++.. .++..+. +|...|.+++|+| ++. +|++++.|+.|++||+.
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----TPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----SCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSS
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----CCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCC
Confidence 999993347999999999 99999999831 5677787 8999999999999 676 56799999999999998
Q ss_pred CCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCC
Q 010997 404 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 471 (496)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~ 471 (496)
.. ..+..+.+|...|.+++|+|+++.++++++ .||.|+||++....
T Consensus 294 ~~---------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-------~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 294 SA---------------EQLSQFPARGNWCFKTKFAPEAPDLFACAS-------FDNKIEVQTLQNLT 339 (416)
T ss_dssp SC---------------CEEEEEECSSSCCCCEEECTTCTTEEEECC-------SSSEEEEEESCCCC
T ss_pred CC---------------ccceeecCCCCceEEEEECCCCCCEEEEEe-------cCCcEEEEEccCCC
Confidence 74 466777899999999999999866777554 45999999998643
No 31
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-38 Score=300.91 Aligned_cols=260 Identities=20% Similarity=0.327 Sum_probs=203.1
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEE
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLS 213 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~s 213 (496)
..+|.+.|++++|+| ++++||+|+.|++|+|||+.++. ......+.+|.+ .|++++|+| ++++|+|
T Consensus 9 ~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~----------~~~~~~l~gH~~-~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGG----------QILIADLRGHEG-PVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp -----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEECCGGGSSCEEE
T ss_pred cccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCC----------cEEEEEEcCCCc-cEEEEEeCCCCCCCEEEE
Confidence 358999999999999 88999999999999999997651 123567899998 799999986 4889999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-Cc
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQ 292 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~ 292 (496)
|+.|++|++||++++.. .....+.+|...|++++|+|++ ..
T Consensus 77 ~s~D~~v~iWd~~~~~~--------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~ 118 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTW--------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGL 118 (316)
T ss_dssp EETTSCEEEECCSSSCC--------------------------------------CEEEEECCCSSCCCEEEECCTTTCS
T ss_pred EECCCEEEEEECCCCcc--------------------------------------eEEEEccCCCCceEEEEECCCCCCc
Confidence 99999999999875321 1235577899999999999983 27
Q ss_pred eEEEEcCCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCC-----------------CcEEEEEcCCCcEEEEeCC
Q 010997 293 EFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLD-----------------DNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~-----------------~~~l~sgs~dg~i~iwd~~ 354 (496)
+|++|+.|++|++||++.... .....+.+|...|.+++|+| + +.+|++|+.|+.|++||++
T Consensus 119 ~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 119 ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence 899999999999999987631 12344568999999999999 4 4689999999999999997
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCC---CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 431 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~---~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 431 (496)
.... ..++..+.+|...|.+++|+|++ ..+||+++.|+.|+|||+....... .... .+.+|..
T Consensus 198 ~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~--------~~~~---~~~~~~~ 263 (316)
T 3bg1_A 198 EDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT--------WSPK---LLHKFND 263 (316)
T ss_dssp TTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC--------CBCC---EEEECSS
T ss_pred CCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc--------hhhh---hhhcCCC
Confidence 5110 13567788999999999999986 2368899999999999997631100 0011 2346788
Q ss_pred CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.|.+++|+|++..++ +|+.||+|+||++.
T Consensus 264 ~v~~v~~sp~g~~la--------s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 264 VVWHVSWSITANILA--------VSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEECTTTCCEE--------EEESSSCEEEEEEC
T ss_pred cEEEEEEcCCCCEEE--------EEcCCCeEEEEEEC
Confidence 999999999987655 44456999999986
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.3e-37 Score=315.55 Aligned_cols=262 Identities=25% Similarity=0.484 Sum_probs=228.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|.+.|.+++|+| ++.+|++++.||.|++||+... ....+.+|.. .|.+++|+|++++|++|
T Consensus 298 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~-~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSS-SVWGVAFSPDGQTIASA 362 (577)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCC-CEEEEEECCCCCEEEEE
Confidence 4568999999999999 8889999999999999997654 3456778887 68999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.||.|++||... ..+..+.+|...|.+++|+|++ .+|
T Consensus 363 ~~dg~v~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~s~dg-~~l 400 (577)
T 2ymu_A 363 SDDKTVKLWNRNG-----------------------------------------QLLQTLTGHSSSVRGVAFSPDG-QTI 400 (577)
T ss_dssp ETTSEEEEEETTC-----------------------------------------CEEEEEECCSSCEEEEEECTTS-SCE
T ss_pred eCCCEEEEEcCCC-----------------------------------------CEEEEecCCCCCeEEEEECCCC-CEE
Confidence 9999999999642 1236678899999999999999 789
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
++++.|+.|++||.. ++ ....+.+|...|++++|+| ++.+|++++.|+.|++||.. +..+..+.+|...
T Consensus 401 ~~~~~d~~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~ 469 (577)
T 2ymu_A 401 ASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSS 469 (577)
T ss_dssp EEEETTSEEEEECTT-CC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-------SCEEEEEECCSSC
T ss_pred EEEeCCCEEEEEeCC-CC--EEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC-------CCEEEEEcCCCCC
Confidence 999999999999953 33 5667789999999999999 99999999999999999965 4788899999999
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 454 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~ 454 (496)
|.+++|+|++. +||+++.|+.|++||... .++..+.+|...|++++|+|++.+|+
T Consensus 470 v~~~~~spd~~-~las~~~d~~i~iw~~~~----------------~~~~~~~~h~~~v~~l~~s~dg~~l~-------- 524 (577)
T 2ymu_A 470 VRGVAFSPDGQ-TIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTIA-------- 524 (577)
T ss_dssp EEEEEECTTSC-EEEEEETTSEEEEEETTS----------------CEEEEEECCSSCEEEEEECTTSSCEE--------
T ss_pred EEEEEEcCCCC-EEEEEeCCCEEEEEcCCC----------------CEEEEEeCCCCCEEEEEEcCCCCEEE--------
Confidence 99999999998 568999999999999643 45667889999999999999988765
Q ss_pred CCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 455 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 455 sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+++.||.|+|||.. ++++.++.+|.++|++++|+|
T Consensus 525 s~~~dg~v~lwd~~-------~~~~~~~~~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 525 SASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP 559 (577)
T ss_dssp EEETTSEEEEECTT-------SCEEEEEECCSSCEEEEEECT
T ss_pred EEECcCEEEEEeCC-------CCEEEEEcCCCCCEEEEEEcC
Confidence 44456999999965 567788899999999999998
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-36 Score=290.67 Aligned_cols=284 Identities=19% Similarity=0.289 Sum_probs=213.1
Q ss_pred CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP 174 (496)
Q Consensus 95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~ 174 (496)
++.+..++||++..... ............+|.+.|++++|+| ++.+|++|+.|++|+|||+.++
T Consensus 45 gs~D~~v~iWd~~~~~~--------------~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~- 108 (343)
T 2xzm_R 45 GSRDKTVMIWKLYEEEQ--------------NGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTG- 108 (343)
T ss_dssp EETTSCEEEEEECSSCC--------------SSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSS-
T ss_pred EcCCCEEEEEECCcCCc--------------ccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC-
Confidence 45778899998743111 0000112334568999999999999 8889999999999999999887
Q ss_pred CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997 175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK 254 (496)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (496)
+....+.+|.. .|++++|+|++++|++|+.|++|++||+.......
T Consensus 109 -----------~~~~~~~~h~~-~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~---------------------- 154 (343)
T 2xzm_R 109 -----------TTYKRFVGHQS-EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS---------------------- 154 (343)
T ss_dssp -----------CEEEEEECCCS-CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE----------------------
T ss_pred -----------cEEEEEcCCCC-cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee----------------------
Confidence 56678899988 69999999999999999999999999986321100
Q ss_pred CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC---------ceEEEEcCCCeEEEEEccCCCccceeeeccCCCC
Q 010997 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA---------QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 325 (496)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 325 (496)
.....+|...|.+++|+|++. .+|++++.||.|++||.. .. ....+.+|...
T Consensus 155 ----------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~~ 215 (343)
T 2xzm_R 155 ----------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHESN 215 (343)
T ss_dssp ----------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSSC
T ss_pred ----------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCcccc
Confidence 011236888999999999862 579999999999999943 22 45567789999
Q ss_pred eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 326 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 326 v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
|++++|+| ++.+|++|+.||.|++||++.. ..+...+. +...|.+++|+|++. ++++ +.|+.|++||+...
T Consensus 216 v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~-----~~~~~~~~-~~~~v~~v~~sp~~~-~la~-~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 216 VNHLSISP-NGKYIATGGKDKKLLIWDILNL-----TYPQREFD-AGSTINQIAFNPKLQ-WVAV-GTDQGVKIFNLMTQ 286 (343)
T ss_dssp EEEEEECT-TSSEEEEEETTCEEEEEESSCC-----SSCSEEEE-CSSCEEEEEECSSSC-EEEE-EESSCEEEEESSSC
T ss_pred ceEEEECC-CCCEEEEEcCCCeEEEEECCCC-----cccceeec-CCCcEEEEEECCCCC-EEEE-ECCCCEEEEEeCCC
Confidence 99999999 9999999999999999999652 23444443 566799999999987 5544 45888999999764
Q ss_pred Cccc--CCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 406 GKKV--EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 406 ~~~~--~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.... .... .+........+|...|.+++|+|++.+++ +|+.||+|++|++.
T Consensus 287 ~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~g~~l~--------sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 287 SKAPVCTIEA----EPITKAEGQKGKNPQCTSLAWNALGKKLF--------AGFTDGVIRTFSFE 339 (343)
T ss_dssp CSCSEEECCC----CSGGGBTTBCCSCCCEEEEEECSSSCCEE--------EEETTSEEEEEEEE
T ss_pred CCCceEEeec----CcchhhhhhcCCCCceEEEEECCCCCeEE--------EecCCceEEEEEEE
Confidence 2211 0000 00000111237888999999999998765 55556999999986
No 34
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-37 Score=307.71 Aligned_cols=329 Identities=13% Similarity=0.084 Sum_probs=228.6
Q ss_pred CCCCcceEeccCCcccC-CCcceEEEEEEee--------------cCCCCCCeEEEEEEeccCcchhhhccccccCcccC
Q 010997 63 LVWPSLSCRWGPQLEQA-TYKNRQRLYLSEQ--------------TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEAR 127 (496)
Q Consensus 63 ~~wps~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 127 (496)
+..+..+++|.|.-... .....+.|.+|+. ++++.++.+.||++.....
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~---------------- 195 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL---------------- 195 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC----------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC----------------
Confidence 36678899999862110 0012256666652 4466778888888643110
Q ss_pred CcccceEEEecCCCceeEEEecCC-----CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceee
Q 010997 128 SPFVKKHKTIIHPGEVNRIRELPQ-----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL 202 (496)
Q Consensus 128 ~~~~~~~~~~~h~~~V~~l~~~p~-----~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l 202 (496)
.......+.+|.+.|++++|+|. ++.+||+++.||+|+|||+.......... .....+...+.+|.. .|+++
T Consensus 196 -~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~~~~~p~~~l~~h~~-~v~sv 272 (524)
T 2j04_B 196 -HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-KMCEKPSLTLSLADS-LITTF 272 (524)
T ss_dssp -CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-ECCCSCSEEECCTTT-CEEEE
T ss_pred -CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-eeecCceEEEEcCCC-CEEEE
Confidence 00112234567899999999994 25799999999999999998763210000 001145567889987 79999
Q ss_pred eecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCcee
Q 010997 203 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 282 (496)
Q Consensus 203 ~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 282 (496)
+|++++ .|++|+.||+|++||++++. .+...+.+|...|.
T Consensus 273 ~~s~~~-~lasgs~DgtV~lWD~~~~~---------------------------------------~~~~~~~~H~~~V~ 312 (524)
T 2j04_B 273 DFLSPT-TVVCGFKNGFVAEFDLTDPE---------------------------------------VPSFYDQVHDSYIL 312 (524)
T ss_dssp EESSSS-EEEEEETTSEEEEEETTBCS---------------------------------------SCSEEEECSSSCEE
T ss_pred EecCCC-eEEEEeCCCEEEEEECCCCC---------------------------------------CceEEeecccccEE
Confidence 999864 89999999999999997531 12255788999999
Q ss_pred EE--EEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC--CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 283 DV--TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 283 ~l--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
+| .|+|++..+|+||+.|++|+|||+++++ ....+.+|.. .|.+++|+| ++..|++++.|++|++||++.
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~--- 386 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA--- 386 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC---
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCCCC--cccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc---
Confidence 99 4667654689999999999999999876 3334445543 588999999 888999999999999999998
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC---------------CCCCCCC------
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE---------------QGPRTTN------ 417 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~------ 417 (496)
+.++..+.+|.+.|++|+|+|+++. |++|+.||+|++||+... .... .....+.
T Consensus 387 ---~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~ 461 (524)
T 2j04_B 387 ---AFAVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRID 461 (524)
T ss_dssp ---TTCCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEEC
T ss_pred ---cccceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEcc
Confidence 6778889999999999999999995 679999999999997542 1110 0000000
Q ss_pred ---------CCCeeEEEecCCCCCcceEEecCCCC--cEEEEecCCCCCCCCCCeEEEeecC
Q 010997 418 ---------YPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 418 ---------~~~~~~~~~~~h~~~V~~~~~~p~~~--~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.....+..+.+|...|.+++|+|++. .++|+++ .||.|+||++.
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~-------~~g~vrlw~l~ 516 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN-------SAGLLTLEYLS 516 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC-------TTSEEEEEECS
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc-------cCceEEEEEcc
Confidence 01234566788999999999999874 4666444 45999999998
No 35
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.6e-37 Score=294.10 Aligned_cols=298 Identities=19% Similarity=0.287 Sum_probs=220.5
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+.+|.+.|++|+|+|+++++||||+.||+|+|||+.+..... ..+...+.+|.. .|.+++|+|++++|++|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------~~~~~~l~~h~~-~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-------GIPQRALRGHSH-FVSDVVISSDGQFALSG 104 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-------EEEEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-------ceeeEEEeCCCC-CEEEEEECCCCCEEEEE
Confidence 4568999999999999768999999999999999998763221 134567889988 79999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccc----cccCCCCCceeccCCCCCCCCCCCCCCCCcC-CeeeeecCCCceeEEEEccC
Q 010997 215 GKDKSVVLWSIQDHITSSATDPAT----AKSAGSSGSIIKQSPKPGDGNDKAADGPSVG-PRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~ 289 (496)
+.|+.|++|+.............. ..........+. ....++.+.+|+..... ....+.+|...+..++|+++
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV--SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE--EEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCccce--eecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 999999999998754322111100 000000001111 11234455566654433 23445679999999999987
Q ss_pred CC-ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 290 SA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 290 ~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
+. .++++++.|+.|++||+++.+ ....+.+|...|++++|+| ++.+|++|+.||.|++||+++ ..++..+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~------~~~~~~~ 253 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE------GKHLYTL 253 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc------Cceeeee
Confidence 53 467899999999999999877 6677789999999999999 999999999999999999998 6777777
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
.. ...|.+++|+|++. ++ +++.|+.|+|||++........ ..........+|...|++++|+|++.+++
T Consensus 254 ~~-~~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-- 322 (340)
T 4aow_A 254 DG-GDIINALCFSPNRY-WL-CAATGPSIKIWDLEGKIIVDEL------KQEVISTSSKAEPPQCTSLAWSADGQTLF-- 322 (340)
T ss_dssp EC-SSCEEEEEECSSSS-EE-EEEETTEEEEEETTTTEEEEEE------CCC-------CCCCCEEEEEECTTSSEEE--
T ss_pred cC-CceEEeeecCCCCc-ee-eccCCCEEEEEECCCCeEEEec------cccceeeeccCCCCCEEEEEECCCCCEEE--
Confidence 64 56899999999876 44 6667999999999864211110 01122334567899999999999887655
Q ss_pred ecCCCCCCCCCCeEEEeecC
Q 010997 449 VSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~ 468 (496)
||+.||.|+|||++
T Consensus 323 ------sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 323 ------AGYTDNLVRVWQVT 336 (340)
T ss_dssp ------EEETTSCEEEEEEE
T ss_pred ------EEeCCCEEEEEeCC
Confidence 45556999999998
No 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.1e-37 Score=306.42 Aligned_cols=284 Identities=14% Similarity=0.160 Sum_probs=216.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLS 213 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~s 213 (496)
...+|...|+||+|+|.++++||+|+.||.|+|||+.+.. ......+.+|.+ .|++|+|+| ++.+|+|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~----------~~~~~~~~gH~~-~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----------KPTFIKGIGAGG-SITGLKFNPLNTNQFYA 182 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS----------CCEEECCCSSSC-CCCEEEECSSCTTEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC----------ceeEEEccCCCC-CEEEEEEeCCCCCEEEE
Confidence 4457999999999999888999999999999999998762 123345668987 799999998 5789999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.||+|++||+++..... ......+...+.+++|+|++ .+
T Consensus 183 ~s~D~~v~iwd~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~-~~ 223 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRV--------------------------------------FASSDTINIWFCSLDVSASS-RM 223 (435)
T ss_dssp ECSSSCEEEEETTSCEEEE--------------------------------------EECCSSCSCCCCCEEEETTT-TE
T ss_pred EeCCCEEEEeeccCCceeE--------------------------------------EeccCCCCccEEEEEECCCC-CE
Confidence 9999999999997532210 01112334567899999998 79
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
|++|+.||.|++||++... +..+.+|...|++++|+|....+|++|+.|+.|+|||+++... ...+....+|..
T Consensus 224 l~~g~~dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~ 297 (435)
T 4e54_B 224 VVTGDNVGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRH 297 (435)
T ss_dssp EEEECSSSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSS
T ss_pred EEEEeCCCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc---cceEEEeeeccc
Confidence 9999999999999997543 4566789999999999995556899999999999999998431 122334467999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC------CcceEEecCCCCcEEE
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD------KVVDFHWNASDPWTVV 447 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------~V~~~~~~p~~~~l~~ 447 (496)
.|++++|+|++.+ |++++.||.|+|||+..... .....+|.. .+..+.|+|++..+++
T Consensus 298 ~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 298 PVNAACFSPDGAR-LLTTDQKSEIRVYSASQWDC---------------PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CEEECCBCTTSSE-EEEEESSSCEEEEESSSSSS---------------EEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred cccceeECCCCCe-eEEEcCCCEEEEEECCCCcc---------------ceEEecccccccccceeEEEEEcCCCCEEEE
Confidence 9999999999985 67999999999999987522 222222221 2445678888777666
Q ss_pred EecCCC----CCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEe-ccCC
Q 010997 448 SVSDDC----DSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISC-TSKP 496 (496)
Q Consensus 448 s~s~d~----~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~-~~sP 496 (496)
+.+.|. .++..++.|++||.. +++.+..+ .+|...|.++ +|||
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~------~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGN------SGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSS------SCCEEEEECCSSCCCCCCEEEECT
T ss_pred EEcCCCCeEEEEecCCCEEEEEECC------CCcEEEEEeCCCCCcEEEEEEECC
Confidence 655542 245566899999998 55655554 4678888887 6887
No 37
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.8e-36 Score=281.69 Aligned_cols=250 Identities=20% Similarity=0.394 Sum_probs=209.2
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|...|.+++|+| ++++|++|+.||.|++||+.+. +....+.+|.. .|.+++|+|++++|++|
T Consensus 60 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s~ 125 (312)
T 4ery_A 60 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSN-YVFCCNFNPQSNLIVSG 125 (312)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEE
T ss_pred hhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEcCCCC-CEEEEEEcCCCCEEEEE
Confidence 3457999999999999 8899999999999999999887 66778899987 69999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.||.|++||++++. .+..+..|..+|.+++|+|++ .+|
T Consensus 126 ~~d~~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l 164 (312)
T 4ery_A 126 SFDESVRIWDVKTGK----------------------------------------CLKTLPAHSDPVSAVHFNRDG-SLI 164 (312)
T ss_dssp ETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEECTTS-SEE
T ss_pred eCCCcEEEEECCCCE----------------------------------------EEEEecCCCCcEEEEEEcCCC-CEE
Confidence 999999999997542 235677899999999999998 789
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
++++.||.|++||+++++. .......+...+.+++|+| ++.+|++++.||.|++||+++ +..+..+.+|...
T Consensus 165 ~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~ 236 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNE 236 (312)
T ss_dssp EEEETTSCEEEEETTTCCE-EEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTT------TEEEEEECSSCCS
T ss_pred EEEeCCCcEEEEECCCCce-eeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEEecCCc
Confidence 9999999999999998772 2223345678899999999 899999999999999999998 7788888888765
Q ss_pred EE--EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 375 VL--CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 375 i~--~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
+. ...|++.+..+|++|+.||.|++||+... .++..+.+|...|.+++|+|++..++ +++
T Consensus 237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~-- 298 (312)
T 4ery_A 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---------------EIVQKLQGHTDVVISTACHPTENIIA-SAA-- 298 (312)
T ss_dssp SSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECSSSSEEE-EEE--
T ss_pred eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---------------hhhhhhhccCCcEEEEeecCcCCceE-EEE--
Confidence 33 33455443346789999999999999874 56777899999999999999877554 432
Q ss_pred CCCCCCCCeEEEeecC
Q 010997 453 CDSTGGGGTLQIWRMS 468 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~ 468 (496)
.+.|++|++|+..
T Consensus 299 ---~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 ---LENDKTIKLWKSD 311 (312)
T ss_dssp ---CTTTCCEEEEECC
T ss_pred ---ccCCccEEEecCC
Confidence 1246999999875
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=312.41 Aligned_cols=291 Identities=11% Similarity=0.063 Sum_probs=209.4
Q ss_pred EEEecCCCceeEEEecCCC-C-------cEEEE-------------------EeCCCcEEEEeCCCCCCccccCCCCCCC
Q 010997 134 HKTIIHPGEVNRIRELPQN-T-------KIVAT-------------------HTDSPDVLIWDVEAQPNRHAVLGATNSR 186 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~-~-------~~lat-------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 186 (496)
..++.+.+.|.+++|+|.. + ++||+ ++.|++|+|||+.+..... .
T Consensus 127 ~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~--------~ 198 (524)
T 2j04_B 127 GFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC--------V 198 (524)
T ss_dssp EEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE--------E
T ss_pred eEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc--------e
Confidence 3455688999999999942 1 56666 4578899999997762110 1
Q ss_pred CceEEecCCCCcceeeeecCC------CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCC
Q 010997 187 PDLILTGHQDNAEFALAMCPT------EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260 (496)
Q Consensus 187 ~~~~l~~h~~~~v~~l~~~p~------~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (496)
....+.+|.+ .|.+++|+|+ +.+||+|+.||+|++||+..+.......
T Consensus 199 ~~~~l~~~~~-~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~------------------------- 252 (524)
T 2j04_B 199 KVQTIVHSFG-EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF------------------------- 252 (524)
T ss_dssp EEEEEEECCC-SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-------------------------
T ss_pred EEEEEEecCC-cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-------------------------
Confidence 1234666766 6999999997 5699999999999999997543210000
Q ss_pred CCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEE--EecCCCC-c
Q 010997 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDD-N 337 (496)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i--~~sp~~~-~ 337 (496)
.....+...+.+|...|++++|++++ .|++|+.||+|++||++++.. ....+.+|...|++| +|+| ++ .
T Consensus 253 ----~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~-~g~~ 324 (524)
T 2j04_B 253 ----KMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSD-FEDT 324 (524)
T ss_dssp ----ECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCT-TSCC
T ss_pred ----eeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCC-CCCe
Confidence 00112335678899999999999854 799999999999999987653 244567899999999 5777 76 8
Q ss_pred EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC
Q 010997 338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415 (496)
Q Consensus 338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~ 415 (496)
+||+|+.|++|+|||+++ +.++..+.+|.. .|.+++|+|++.. |++++.|+.|++||++..
T Consensus 325 ~laS~S~D~tvklWD~~~------~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~---------- 387 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKD------IATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAA---------- 387 (524)
T ss_dssp EEEEEETTSEEEEECGGG------HHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCT----------
T ss_pred EEEEeccCCeEEEEECCC------CCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccc----------
Confidence 999999999999999998 667777777653 5889999999884 679999999999999874
Q ss_pred CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC--------------------C-
Q 010997 416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR--------------------P- 474 (496)
Q Consensus 416 ~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~--------------------~- 474 (496)
.++..+.+|.+.|++|+|+|+++.++ ||+.||+|+||++....+. +
T Consensus 388 -----~~~~~l~gH~~~V~sva~Sp~g~~l~--------Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 454 (524)
T 2j04_B 388 -----FAVHPLVSRETTITAIGVSRLHPMVL--------AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIK 454 (524)
T ss_dssp -----TCCEEEEECSSCEEEEECCSSCCBCE--------EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSS
T ss_pred -----ccceeeecCCCceEEEEeCCCCCeEE--------EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCC
Confidence 23345668999999999999988755 4455699999986432111 1
Q ss_pred -----------------chHHHHHHHhccceEEEeccCC
Q 010997 475 -----------------QDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 475 -----------------~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.+..+.++.+|..+|.+|+|+|
T Consensus 455 g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 455 DDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp SCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred CCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 1455677788888888888887
No 39
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=296.64 Aligned_cols=277 Identities=14% Similarity=0.219 Sum_probs=222.0
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
+|.+.|++++|+| ++++||+|+.||.|++|| .++ .....+.+|.. .|.+++|+|++++|++++.|
T Consensus 106 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d 170 (425)
T 1r5m_A 106 KTTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTG------------ALLNVLNFHRA-PIVSVKWNKDGTHIISMDVE 170 (425)
T ss_dssp --CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTS------------CEEEEECCCCS-CEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCC------------CeeeeccCCCc-cEEEEEECCCCCEEEEEecC
Confidence 4788999999999 889999999999999999 333 45667888887 69999999999999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|.|++||+.++............ ...............+.+++|+|++ .++++
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 223 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETG-------------------------GSSINAENHSGDGSLGVDVEWVDDD--KFVIP 223 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC----------------------------------------CCCBSCCEEEETT--EEEEE
T ss_pred CeEEEEECCCCcEEEEeeccccC-------------------------ccceeeccccCCcceeeEEEEcCCC--EEEEE
Confidence 99999999865432211110000 0000001111222338999999976 68999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
+.||.|++||++.+. ....+..|...|.+++|+| ++.+|++++.||.|++||+++ +..+..+..|...|.+
T Consensus 224 ~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 224 GPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGN------GNSQNCFYGHSQSIVS 294 (425)
T ss_dssp CGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSS------BSCSEEECCCSSCEEE
T ss_pred cCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC------CccceEecCCCccEEE
Confidence 999999999999876 5566678999999999999 899999999999999999998 7888999999999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
++|+|++ +|++++.|+.|++||+... ..+..+.+|...|.+++|+|++..++ + |+
T Consensus 295 ~~~~~~~--~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~s~~~~~l~-~-------~~ 349 (425)
T 1r5m_A 295 ASWVGDD--KVISCSMDGSVRLWSLKQN---------------TLLALSIVDGVPIFAGRISQDGQKYA-V-------AF 349 (425)
T ss_dssp EEEETTT--EEEEEETTSEEEEEETTTT---------------EEEEEEECTTCCEEEEEECTTSSEEE-E-------EE
T ss_pred EEECCCC--EEEEEeCCCcEEEEECCCC---------------cEeEecccCCccEEEEEEcCCCCEEE-E-------EE
Confidence 9999998 5679999999999999874 56677788999999999999887654 3 34
Q ss_pred CCCeEEEeecCCCCcCCchH--------------------HHHHHHhccc--eEEEeccCC
Q 010997 458 GGGTLQIWRMSDLIYRPQDE--------------------VLAELEKFKA--HVISCTSKP 496 (496)
Q Consensus 458 ~Dg~i~iw~~~~~~~~~~~~--------------------~~~~l~~h~~--~v~~~~~sP 496 (496)
.||.|++|++. .+. .+..+.+|.. .|.+++|+|
T Consensus 350 ~dg~i~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 350 MDGQVNVYDLK------KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp TTSCEEEEECH------HHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred CCCeEEEEECC------CCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 45999999998 555 6778888876 999999987
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5e-36 Score=292.46 Aligned_cols=250 Identities=22% Similarity=0.384 Sum_probs=204.1
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
.+...|++++|+| ++++||+|+.||.|+|||+.+. +....+.+|.. .|++++|+|++++|++|+.|
T Consensus 121 ~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 121 SSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENR------------KIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred CCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCC------------cEEEEEccCCC-CEEEEEEcCCCCEEEEecCC
Confidence 4556799999999 8899999999999999999887 56678899988 69999999999999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
++|++||++++... ..+ .+...+.+++|+|.++.+|++|
T Consensus 187 ~~v~iwd~~~~~~~----------------------------------------~~~-~~~~~v~~~~~~~~~~~~l~~~ 225 (393)
T 1erj_A 187 RTVRIWDLRTGQCS----------------------------------------LTL-SIEDGVTTVAVSPGDGKYIAAG 225 (393)
T ss_dssp SEEEEEETTTTEEE----------------------------------------EEE-ECSSCEEEEEECSTTCCEEEEE
T ss_pred CcEEEEECCCCeeE----------------------------------------EEE-EcCCCcEEEEEECCCCCEEEEE
Confidence 99999999764321 222 3556799999999444899999
Q ss_pred cCCCeEEEEEccCCCccceeee-------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC------CCCCC
Q 010997 298 GDDSCLILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------GVGSP 364 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~------~~~~~ 364 (496)
+.|+.|++||++++. ....+ .+|...|.+++|+| ++.+|++|+.||.|++||++..... ..+.+
T Consensus 226 s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~ 302 (393)
T 1erj_A 226 SLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302 (393)
T ss_dssp ETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CE
T ss_pred cCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence 999999999999876 33333 47899999999999 9999999999999999999863210 01345
Q ss_pred ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC---
Q 010997 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS--- 441 (496)
Q Consensus 365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~--- 441 (496)
...+.+|...|.+++|+|++.+ |++|+.|+.|++||+... ..+..+.+|...|.+++|++.
T Consensus 303 ~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~---------------~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 303 EVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG---------------NPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp EEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECSSCTT
T ss_pred eEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCC---------------eEEEEECCCCCCEEEEEecCCcCc
Confidence 5678899999999999999985 679999999999999874 456678899999999999873
Q ss_pred --CCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 442 --DPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 442 --~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
...+++|++. ||+|+||++.
T Consensus 367 ~p~~~~l~sgs~-------Dg~i~iW~~~ 388 (393)
T 1erj_A 367 GPEYNVFATGSG-------DCKARIWKYK 388 (393)
T ss_dssp CTTCEEEEEEET-------TSEEEEEEEE
T ss_pred CCCCCEEEEECC-------CCcEEECccc
Confidence 2345665554 5999999987
No 41
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=284.49 Aligned_cols=307 Identities=17% Similarity=0.282 Sum_probs=232.9
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
+..++.|.|.- .+++... .....+..+.||++... ........+|.+.|++
T Consensus 20 ~v~~~~~~p~~--------~~l~~~~-s~~~~d~~v~iw~~~~~--------------------~~~~~~~~~~~~~v~~ 70 (357)
T 3i2n_A 20 TVFDCKWVPCS--------AKFVTMG-NFARGTGVIQLYEIQHG--------------------DLKLLREIEKAKPIKC 70 (357)
T ss_dssp CEEEEEECTTS--------SEEEEEE-C--CCCEEEEEEEECSS--------------------SEEEEEEEEESSCEEE
T ss_pred ceEEEEEcCCC--------ceEEEec-CccCCCcEEEEEeCCCC--------------------cccceeeecccCcEEE
Confidence 66788888851 2343322 11123788999986421 1223445689999999
Q ss_pred EEecCCC--CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceee------eecCCCCceEEecCC
Q 010997 146 IRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL------AMCPTEPYVLSGGKD 217 (496)
Q Consensus 146 l~~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l------~~~p~~~~l~sg~~D 217 (496)
++|+|.. +.+|++|+.||.|++||+.+.. .+...+.+|.. .|.++ +|+|++++|++|+.|
T Consensus 71 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp EECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred EEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCC
Confidence 9999943 7899999999999999998872 26678889988 68999 567899999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC----CceeEEE----EccC
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE----DTVEDVT----FCPS 289 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~----~~~~ 289 (496)
|.|++||+.++.. +...+..|. ..|.+++ |+|+
T Consensus 139 ~~i~vwd~~~~~~---------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 139 GTVKVWDPRQKDD---------------------------------------PVANMEPVQGENKRDCWTVAFGNAYNQE 179 (357)
T ss_dssp SCEEEECTTSCSS---------------------------------------CSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred CeEEEEeCCCCCC---------------------------------------cceeccccCCCCCCceEEEEEEeccCCC
Confidence 9999999986431 113333333 3788888 6788
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
+ .+|++++.||.|++||++++. . .....|...|.+++|+|. ++.+|++|+.||.|++||+++ +.++..
T Consensus 180 ~-~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~ 249 (357)
T 3i2n_A 180 E-RVVCAGYDNGDIKLFDLRNMA--L-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT------QHPTKG 249 (357)
T ss_dssp C-CEEEEEETTSEEEEEETTTTE--E-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE------EETTTE
T ss_pred C-CEEEEEccCCeEEEEECccCc--e-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC------CCcccc
Confidence 7 799999999999999999877 3 334578999999999995 578999999999999999998 455555
Q ss_pred ec-----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC----CCCCCeeEEEecCCCCCcceEEe
Q 010997 368 FE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----TNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 368 ~~-----~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
+. +|...|++++|+|++..+|++++.||.|++||++............ .......+..+.+|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 44 8999999999999998668899999999999998743322111100 01122567788999999999999
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+|++.+++++++.| |.|+||++.+
T Consensus 330 s~~~~~l~~s~~~d-------~~i~iw~~~~ 353 (357)
T 3i2n_A 330 SPDKRGLCVCSSFD-------QTVRVLIVTK 353 (357)
T ss_dssp CSSSTTEEEEEETT-------SEEEEEEECC
T ss_pred cCCCCeEEEEecCC-------CcEEEEECCC
Confidence 99999887766665 9999999984
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-35 Score=282.10 Aligned_cols=272 Identities=20% Similarity=0.343 Sum_probs=224.8
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCCCC
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEP 209 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~~~ 209 (496)
......+|.+.|++++|+| ++++|++++ ||.|++||+.+.... .....+. +|.. .|.+++|+|+++
T Consensus 43 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~~ 110 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNK---------SPVSQLDCLNRDN-YIRSCKLLPDGC 110 (337)
T ss_dssp EEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCC---------SCSEEEECSCTTS-BEEEEEECTTSS
T ss_pred ccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCce---------eeeecccccCCCC-cEEEEEEcCCCC
Confidence 4556679999999999999 888999998 999999999876321 2333444 6766 799999999999
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+|++|+.||.|++||+.++.. .....+..|...|.+++|+|+
T Consensus 111 ~l~~~~~d~~i~~~d~~~~~~--------------------------------------~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 111 TLIVGGEASTLSIWDLAAPTP--------------------------------------RIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp EEEEEESSSEEEEEECCCC----------------------------------------EEEEEEECSSSCEEEEEECTT
T ss_pred EEEEEcCCCcEEEEECCCCCc--------------------------------------ceeeecccCCCceEEEEECCC
Confidence 999999999999999975421 123567789999999999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
+ .++++++.||.|++||+++++ ....+..|...|.+++|+| ++.+|++++.||.|++||+++ +..+..+.
T Consensus 153 ~-~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~ 222 (337)
T 1gxr_A 153 S-KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQHD 222 (337)
T ss_dssp S-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEEE
T ss_pred C-CEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCC------CceEeeec
Confidence 8 789999999999999999876 5667778999999999999 899999999999999999998 56666664
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
+...+.+++|+|++.. |++++.|+.|++||+... ......+|...|.+++|+|++.+++ +
T Consensus 223 -~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~-~- 282 (337)
T 1gxr_A 223 -FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKP----------------DKYQLHLHESCVLSLKFAYCGKWFV-S- 282 (337)
T ss_dssp -CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSS----------------CEEEECCCSSCEEEEEECTTSSEEE-E-
T ss_pred -CCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCC----------------CeEEEcCCccceeEEEECCCCCEEE-E-
Confidence 7889999999999984 679999999999999874 1335678999999999999887654 4
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
++.||.|++|++.. ++.+ ....|...|.+++|+|
T Consensus 283 ------~~~dg~i~~~~~~~------~~~~-~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 283 ------TGKDNLLNAWRTPY------GASI-FQSKESSSVLSCDISV 316 (337)
T ss_dssp ------EETTSEEEEEETTT------CCEE-EEEECSSCEEEEEECT
T ss_pred ------ecCCCcEEEEECCC------CeEE-EEecCCCcEEEEEECC
Confidence 44459999999983 3333 2245788999999987
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.6e-36 Score=313.31 Aligned_cols=253 Identities=19% Similarity=0.376 Sum_probs=208.5
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|.+.|++++|+|+++++|+||+.||+|+|||+....... ......+.+|.. .|.+++|+|++++|+||
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~~~~~~~~~h~~-~v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------GVAQRRLTGHSH-FVEDVVLSSDGQFALSG 448 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------CEEEEEEECCSS-CEEEEEECTTSSEEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------ccccceecCCCC-cEEEEEECCCCCEEEEE
Confidence 4668999999999999778999999999999999998652111 133457889998 69999999999999999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
+.||+|+|||+.++.. ...+.+|...|.+++|+|++ .+|
T Consensus 449 s~Dg~v~vwd~~~~~~----------------------------------------~~~~~~h~~~v~~~~~s~~~-~~l 487 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVS----------------------------------------TRRFVGHTKDVLSVAFSLDN-RQI 487 (694)
T ss_dssp ETTSEEEEEETTTTEE----------------------------------------EEEEECCSSCEEEEEECTTS-SCE
T ss_pred eCCCcEEEEECCCCcc----------------------------------------eeEEeCCCCCEEEEEEeCCC-CEE
Confidence 9999999999975432 36678999999999999998 789
Q ss_pred EEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCC--cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 295 CSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
++|+.|++|++||+....... .....+|...|.+++|+| ++ .+|++|+.|++|++||+++ ......+.+|
T Consensus 488 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~------~~~~~~~~~h 560 (694)
T 3dm0_A 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSN------CKLRSTLAGH 560 (694)
T ss_dssp EEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTT------CCEEEEECCC
T ss_pred EEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCC------CcEEEEEcCC
Confidence 999999999999986543111 111246889999999999 54 6899999999999999998 7788899999
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
.+.|++++|+|++. +|++|+.||.|+|||+... ..+..+. +...|.+++|+|++. ++++++
T Consensus 561 ~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~---------------~~~~~~~-~~~~v~~~~~sp~~~-~l~~~~- 621 (694)
T 3dm0_A 561 TGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEG---------------KKLYSLE-ANSVIHALCFSPNRY-WLCAAT- 621 (694)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSBCEEEETTTT---------------EEEECCB-CSSCEEEEEECSSSS-EEEEEE-
T ss_pred CCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC---------------ceEEEec-CCCcEEEEEEcCCCc-EEEEEc-
Confidence 99999999999998 5789999999999999874 3344343 345799999999765 444333
Q ss_pred CCCCCCCCCeEEEeecCC
Q 010997 452 DCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~ 469 (496)
|+.|+|||+..
T Consensus 622 -------~~~i~iwd~~~ 632 (694)
T 3dm0_A 622 -------EHGIKIWDLES 632 (694)
T ss_dssp -------TTEEEEEETTT
T ss_pred -------CCCEEEEECCC
Confidence 36799999984
No 44
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-36 Score=296.60 Aligned_cols=277 Identities=13% Similarity=0.172 Sum_probs=224.2
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC----C---
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT----E--- 208 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~----~--- 208 (496)
..+|.+.|++++|+| ++||+|+.||.|+|||+.+..... .......+.+|.. .|.+++|+|+ +
T Consensus 12 ~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~h~~-~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 12 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN------PKDKSYSHFVHKS-GLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp SSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC------GGGGEEEEECCTT-CEEEEEEEEEEETTTEEE
T ss_pred hhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc------CCCcceEEecCCC-cEEEEEEecccccCCccc
Confidence 357999999999988 699999999999999998873111 1235678889988 6999999999 9
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-----CCceeE
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-----EDTVED 283 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~ 283 (496)
++|++|+.||.|++||+.+.... .......+..| ...|.+
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~v~~ 126 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDET-----------------------------------KKVIFEKLDLLDSDMKKHSFWA 126 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTT-----------------------------------CCEEEEEECCSCTTGGGSCEEE
T ss_pred cEEEEEcCCCCEEEEEccCCccc-----------------------------------ccccceeecccccccCCCcEEE
Confidence 99999999999999999764320 00113556677 589999
Q ss_pred EEEc----cCCCce-EEEEcCCCeEEEEEccC------CCccc---eeee-------ccCCCCeEEEEecCCCCcEEEEE
Q 010997 284 VTFC----PSSAQE-FCSVGDDSCLILWDARV------GTSPV---IKVE-------KAHDADLHCVDWNPLDDNLILTG 342 (496)
Q Consensus 284 l~~~----~~~~~~-l~s~~~dg~i~iwd~~~------~~~~~---~~~~-------~~~~~~v~~i~~sp~~~~~l~sg 342 (496)
++|+ |++ .+ |++++.||.|++||++. ..... ...+ ..|...|.+++|+| ++ +|++|
T Consensus 127 ~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~ 203 (397)
T 1sq9_A 127 LKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATG 203 (397)
T ss_dssp EEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEE
T ss_pred EEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEE
Confidence 9999 988 67 99999999999999998 54211 0033 45889999999999 78 99999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCceEecc---C---CCCEEEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCcccCCCC
Q 010997 343 SADNSVRMFDRRNLTSNGVGSPINKFEG---H---SAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVEQGP 413 (496)
Q Consensus 343 s~dg~i~iwd~~~~~~~~~~~~~~~~~~---h---~~~i~~l~~sp~~~~llas~~~d---g~i~iwd~~~~~~~~~~~~ 413 (496)
+.||.|++||+++ +.++..+.. | ...|.+++|+|++. +|++++.| +.|++||+...
T Consensus 204 ~~dg~i~i~d~~~------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~-------- 268 (397)
T 1sq9_A 204 FNNGTVQISELST------LRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG-------- 268 (397)
T ss_dssp CTTSEEEEEETTT------TEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC--------
T ss_pred eCCCcEEEEECCC------CceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCC--------
Confidence 9999999999998 788889988 9 99999999999998 46789889 99999999874
Q ss_pred CCCCCCCeeEEEecC-------------CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH
Q 010997 414 RTTNYPAGLFFQHAG-------------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA 480 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~-------------h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~ 480 (496)
..+..+.+ |...|.+++|+|++.+++ +|+.||.|+|||+. .++.+.
T Consensus 269 -------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~iwd~~------~~~~~~ 327 (397)
T 1sq9_A 269 -------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC--------SAGWDGKLRFWDVK------TKERIT 327 (397)
T ss_dssp -------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE--------EEETTSEEEEEETT------TTEEEE
T ss_pred -------cccceeccCcccccccccccccCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEcC------CCceeE
Confidence 34555666 899999999999887655 44456999999998 566777
Q ss_pred HHH------hc---------------cceEEEeccCC
Q 010997 481 ELE------KF---------------KAHVISCTSKP 496 (496)
Q Consensus 481 ~l~------~h---------------~~~v~~~~~sP 496 (496)
.+. +| ..+|.+++|+|
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 364 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence 777 77 99999999987
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=284.48 Aligned_cols=283 Identities=14% Similarity=0.242 Sum_probs=231.1
Q ss_pred cccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997 129 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (496)
Q Consensus 129 ~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~ 208 (496)
...+...+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++ +....+.+|.. .|.+++|+|++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~ 86 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTG-TIWSIDVDCFT 86 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTS
T ss_pred cccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCC-cEEEEEEcCCC
Confidence 3456678889999999999999 8899999999999999999887 66778889988 69999999999
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
++|++++.||.|++||+.++.. +..+. +...|.+++|+|
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~----------------------------------------~~~~~-~~~~v~~~~~~~ 125 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQC----------------------------------------VATWK-SPVPVKRVEFSP 125 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCE----------------------------------------EEEEE-CSSCEEEEEECT
T ss_pred CEEEEEeCCCeEEEEECCCCcE----------------------------------------EEEee-cCCCeEEEEEcc
Confidence 9999999999999999975432 23344 788999999999
Q ss_pred CCCceEEEEcCC-----CeEEEEEccCCCcc---------ceeeeccCCC--CeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997 289 SSAQEFCSVGDD-----SCLILWDARVGTSP---------VIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 289 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~---------~~~~~~~~~~--~v~~i~~sp~~~~~l~sgs~dg~i~iwd 352 (496)
++ .+|++++.+ +.|++||++..... .......|.. .+.+++|+| ++.+|++++.||.|++||
T Consensus 126 ~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d 203 (369)
T 3zwl_B 126 CG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYD 203 (369)
T ss_dssp TS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEE
T ss_pred CC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEE
Confidence 98 789999888 99999999876521 2223345555 999999999 899999999999999999
Q ss_pred CCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC
Q 010997 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 432 (496)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 432 (496)
+++. ...+..+..|...|.+++|+|++.. |++++.|+.|++||+... ..+..+. +...
T Consensus 204 ~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~---------------~~~~~~~-~~~~ 261 (369)
T 3zwl_B 204 VSNN-----YEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVDVSTL---------------QVLKKYE-TDCP 261 (369)
T ss_dssp TTTT-----TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEEEEEE-CSSC
T ss_pred CCCC-----cEeEEEEecCCCceeEEEECCCCCE-EEEecCCceEEEEECCCC---------------ceeeeec-CCCC
Confidence 9873 2567888899999999999999985 679999999999999874 2333333 6778
Q ss_pred cceEEecCCCCcEEEEecCCCC------CCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 433 VVDFHWNASDPWTVVSVSDDCD------STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 433 V~~~~~~p~~~~l~~s~s~d~~------sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+..++|+|++.++++++.++.. .......+++|++. .++.+..+.+|...|.+++|+|
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~------~~~~~~~~~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI------FEEEIGRVQGHFGPLNTVAISP 325 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC------CCcchhheecccCcEEEEEECC
Confidence 9999999998877754433200 00111189999998 5677788899999999999997
No 46
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=280.10 Aligned_cols=265 Identities=20% Similarity=0.251 Sum_probs=224.5
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
...+.+|.+.|++++| | ++.+||+|+.||.|++||+.+. .....+..|.. .|.+++|+|++++|+
T Consensus 11 ~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQG-FLNSVCYDSEKELLL 75 (313)
T ss_dssp EEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSS------------EEEEEEEECSS-CEEEEEEETTTTEEE
T ss_pred HHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCc-cEEEEEECCCCCEEE
Confidence 3456689999999999 7 7889999999999999999776 55667788877 799999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.||.|++|++.... .......+.+|...|.+++|. + .
T Consensus 76 ~~~~dg~i~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~i~~~~~~--~-~ 115 (313)
T 3odt_A 76 FGGKDTMINGVPLFATS-------------------------------------GEDPLYTLIGHQGNVCSLSFQ--D-G 115 (313)
T ss_dssp EEETTSCEEEEETTCCT-------------------------------------TSCC-CEECCCSSCEEEEEEE--T-T
T ss_pred EecCCCeEEEEEeeecC-------------------------------------CCCcccchhhcccCEEEEEec--C-C
Confidence 99999999999987431 223346678899999999993 4 6
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc-C
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-H 371 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-h 371 (496)
++++++.||.|++|| ... ....+..|...+.+++|.|.++.+|++++.||.|++||.. ..+..+.. |
T Consensus 116 ~l~~~~~d~~i~~~d--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~ 183 (313)
T 3odt_A 116 VVISGSWDKTAKVWK--EGS--LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--------KVIKTFSGIH 183 (313)
T ss_dssp EEEEEETTSEEEEEE--TTE--EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--------EEEEEECSSC
T ss_pred EEEEEeCCCCEEEEc--CCc--EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--------ceEEEEeccC
Confidence 899999999999999 333 4566778999999999988788999999999999999933 56777776 9
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
...|.+++|+|++. |++++.||.|++||++.. ..+..+.+|...|++++|+|++ .+ ++
T Consensus 184 ~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~~~~~-~l-~~--- 241 (313)
T 3odt_A 184 NDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG---------------DVLRTYEGHESFVYCIKLLPNG-DI-VS--- 241 (313)
T ss_dssp SSCEEEEEEEETTE--EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTS-CE-EE---
T ss_pred cccEEEEEEcCCCe--EEEccCCCeEEEEECCch---------------hhhhhhhcCCceEEEEEEecCC-CE-EE---
Confidence 99999999999997 569999999999999874 4666778999999999999988 44 44
Q ss_pred CCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|+.||.|++||+. .++.+..+..|..+|.+++|+|
T Consensus 242 ----~~~dg~v~iwd~~------~~~~~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 242 ----CGEDRTVRIWSKE------NGSLKQVITLPAISIWSVDCMS 276 (313)
T ss_dssp ----EETTSEEEEECTT------TCCEEEEEECSSSCEEEEEECT
T ss_pred ----EecCCEEEEEECC------CCceeEEEeccCceEEEEEEcc
Confidence 4445999999998 5677788889999999999987
No 47
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.5e-35 Score=286.80 Aligned_cols=251 Identities=19% Similarity=0.377 Sum_probs=210.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.....+|.+.|++|+|+| ++++||+|+.||.|+|||+.++ +.+..+.+|.. .+.+++| ++.+|+
T Consensus 140 ~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~------------~~~~~~~~h~~-~v~~~s~--~~~~l~ 203 (420)
T 4gga_A 140 LLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGSLSW--NSYILS 203 (420)
T ss_dssp EEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEE--ETTEEE
T ss_pred EEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCC------------cEEEEEeCCCC-ceEEEee--CCCEEE
Confidence 344457889999999999 8899999999999999999988 66778899987 5777777 567999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.|+.+++||..... ..+..+.+|...+..+.|+|++ .
T Consensus 204 sgs~d~~i~~~d~~~~~---------------------------------------~~~~~~~~h~~~~~~~~~~~~g-~ 243 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAE---------------------------------------HHVATLSGHSQEVCGLRWAPDG-R 243 (420)
T ss_dssp EEETTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-S
T ss_pred EEeCCCceeEeeecccc---------------------------------------eeeEEecccccceeeeeecCCC-C
Confidence 99999999999986432 2236778999999999999999 7
Q ss_pred eEEEEcCCCeEEEEEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEE--EcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 293 EFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILT--GSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
++++++.|+.|++||...++. ........|...|.+++|+|.+..++++ |+.|++|++||+++ +.++..+
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t------~~~~~~~ 317 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GACLSAV 317 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT------TEEEEEE
T ss_pred eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc------cccceee
Confidence 999999999999999987652 2344566899999999999977778776 45799999999998 7777777
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEE-eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSS-AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
.. ...+.++.|+|++..+++++ +.|+.|+|||+.+. .++..+.||.+.|++++|+|++.+++
T Consensus 318 ~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---------------~~v~~l~gH~~~V~~l~~spdg~~l~- 380 (420)
T 4gga_A 318 DA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVA- 380 (420)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEE-
T ss_pred cc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE-
Confidence 75 45789999999999766443 36999999999875 56778899999999999999988755
Q ss_pred EecCCCCCCCCCCeEEEeecCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|||.|++|+|||+.+
T Consensus 381 -------S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 381 -------SAAADETLRLWRCFE 395 (420)
T ss_dssp -------EEETTTEEEEECCSC
T ss_pred -------EEecCCeEEEEECCC
Confidence 555569999999974
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-34 Score=284.01 Aligned_cols=266 Identities=20% Similarity=0.330 Sum_probs=209.3
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
...|.+.|++++|+| ++.+||+|+.||.|++||+.+. +....+.+|.. .|.+++| ++.+|++|+
T Consensus 130 ~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 193 (401)
T 4aez_A 130 ETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQ------------TKLRTMAGHQA-RVGCLSW--NRHVLSSGS 193 (401)
T ss_dssp ECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEE--ETTEEEEEE
T ss_pred ecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCC------------eEEEEecCCCC-ceEEEEE--CCCEEEEEc
Confidence 345899999999999 8899999999999999999887 56678889988 6899999 467999999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.||.|++||++... .....+.+|...|.+++|+|++ .+|+
T Consensus 194 ~dg~i~i~d~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~~l~ 233 (401)
T 4aez_A 194 RSGAIHHHDVRIAN---------------------------------------HQIGTLQGHSSEVCGLAWRSDG-LQLA 233 (401)
T ss_dssp TTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred CCCCEEEEecccCc---------------------------------------ceeeEEcCCCCCeeEEEEcCCC-CEEE
Confidence 99999999997321 2236778899999999999988 7999
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc--CCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
+|+.||.|++||+++.. ....+..|...|.+++|+|....++++|+ .|+.|++||+++ +.++..+. +..
T Consensus 234 s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~------~~~~~~~~-~~~ 304 (401)
T 4aez_A 234 SGGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------GARVNTVD-AGS 304 (401)
T ss_dssp EEETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT------CCEEEEEE-CSS
T ss_pred EEeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC------CCEEEEEe-CCC
Confidence 99999999999999877 56667789999999999995567888866 799999999998 67777776 678
Q ss_pred CEEEEEEcCCCCCEEEE-EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 374 AVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
.|.+++|+|++..++++ |+.||.|++||+... .......+.+|...|.+++|+|++.+++
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~------ 365 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-------------GLTKQVDIPAHDTRVLYSALSPDGRILS------ 365 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-------------EEEEEEEEECCSSCCCEEEECTTSSEEE------
T ss_pred cEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-------------cceeEEEecCCCCCEEEEEECCCCCEEE------
Confidence 89999999999965433 447999999999873 1134555779999999999999887655
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEec
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCT 493 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~ 493 (496)
+++.||.|++|++. .++.+... ..+..+..++.
T Consensus 366 --s~~~dg~i~iw~~~------~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 366 --TAASDENLKFWRVY------DGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp --EECTTSEEEEEECC------C-------------------
T ss_pred --EEeCCCcEEEEECC------CCccccccccccCCCcccee
Confidence 55566999999998 45554443 23333444443
No 49
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.2e-36 Score=288.78 Aligned_cols=255 Identities=13% Similarity=0.157 Sum_probs=211.1
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
.|.++|++++|+| ++++||+|+.||.|+|||+.+.. .+....+.+|.. .|.+++|+|++++|++|+.|
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~----------~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNK----------WVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCc----------EEeeeeecCCCC-cccEEEEeCCCCEEEEEcCC
Confidence 4899999999999 88999999999999999998761 125678889987 79999999999999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|.|++||+.++... ....+..|...|.+++|+|++ .+|+++
T Consensus 74 g~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 114 (372)
T 1k8k_C 74 RNAYVWTLKGRTWK--------------------------------------PTLVILRINRAARCVRWAPNE-KKFAVG 114 (372)
T ss_dssp SCEEEEEEETTEEE--------------------------------------EEEECCCCSSCEEEEEECTTS-SEEEEE
T ss_pred CeEEEEECCCCeee--------------------------------------eeEEeecCCCceeEEEECCCC-CEEEEE
Confidence 99999999754311 113345688999999999998 799999
Q ss_pred cCCCeEEEEEccCCCcc--ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC------------CCCCC
Q 010997 298 GDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS------------NGVGS 363 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~------------~~~~~ 363 (496)
+.|+.|++||++..... .......|...|.+++|+| ++.+|++|+.||.|++||++.... ...+.
T Consensus 115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 99999999999987621 2233357899999999999 899999999999999999752110 00157
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~ 443 (496)
.+..+..|...|.+++|+|++. +|++++.|+.|++||+... ..+..+.+|...|.+++|+|++.
T Consensus 194 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~ 257 (372)
T 1k8k_C 194 LMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKK---------------MAVATLASETLPLLAVTFITESS 257 (372)
T ss_dssp EEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGT---------------TEEEEEECSSCCEEEEEEEETTE
T ss_pred heEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCC---------------ceeEEEccCCCCeEEEEEecCCC
Confidence 7888889999999999999998 5679999999999999874 45667788999999999999876
Q ss_pred cEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 444 WTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 444 ~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
. ++++ .|+.|++|++..
T Consensus 258 ~-l~~~--------~d~~i~i~~~~~ 274 (372)
T 1k8k_C 258 L-VAAG--------HDCFPVLFTYDS 274 (372)
T ss_dssp E-EEEE--------TTSSCEEEEEET
T ss_pred E-EEEE--------eCCeEEEEEccC
Confidence 4 4433 359999999985
No 50
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-35 Score=302.56 Aligned_cols=263 Identities=25% Similarity=0.486 Sum_probs=227.7
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
....+|.+.|++++|+| ++.+|++++.|+.|++||... +....+.+|.. .|++++|+|++++|++
T Consensus 256 ~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~-------------~~~~~~~~h~~-~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSS-SVWGVAFSPDGQTIAS 320 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS-------------CEEEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred EEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCC-------------cEEEEEecCCC-CeEEEEECCCCCEEEE
Confidence 34568999999999999 888999999999999999643 34567889987 6999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
++.||+|++||..... +..+.+|...|.+++|+|++ .+
T Consensus 321 ~~~d~~i~~w~~~~~~-----------------------------------------~~~~~~~~~~v~~~~~s~~g-~~ 358 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQH-----------------------------------------LQTLTGHSSSVWGVAFSPDG-QT 358 (577)
T ss_dssp EETTSCEEEEETTSCE-----------------------------------------EEEECCCSSCEEEEEECTTS-SE
T ss_pred EeCCCeEEEEeCCCCe-----------------------------------------eEEEeCCCCCEEEEEECCCC-CE
Confidence 9999999999976421 25567899999999999999 78
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
+++++.|+.|++||.. ++ ....+.+|...|.+++|+| ++.+|++++.|+.|++||.. +..+..+.+|..
T Consensus 359 l~~~~~dg~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~-------~~~~~~~~~~~~ 427 (577)
T 2ymu_A 359 IASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSS 427 (577)
T ss_dssp EEEEETTSEEEEEETT-CC--EEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT-------CCEEEEEECCSS
T ss_pred EEEEeCCCEEEEEcCC-CC--EEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC-------CCEEEEecCCCC
Confidence 9999999999999953 33 5667778999999999999 99999999999999999964 578889999999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
.|++++|+|++. +|++++.|+.|++||+.. ..+..+.+|...|++++|+|++.++ +++
T Consensus 428 ~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~----------------~~~~~~~~~~~~v~~~~~spd~~~l-as~---- 485 (577)
T 2ymu_A 428 SVWGVAFSPDDQ-TIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTI-ASA---- 485 (577)
T ss_dssp CEEEEEECTTSS-EEEEEETTSEEEEEETTS----------------CEEEEEECCSSCEEEEEECTTSCEE-EEE----
T ss_pred CeEEEEECCCCC-EEEEEcCCCEEEEEECCC----------------CEEEEEcCCCCCEEEEEEcCCCCEE-EEE----
Confidence 999999999998 567999999999999754 4566788999999999999988765 444
Q ss_pred CCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 454 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.|+.|+||+.. ++++.++.+|...|++++|+|
T Consensus 486 ---~~d~~i~iw~~~-------~~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 486 ---SDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp ---ETTSEEEEEETT-------SCEEEEEECCSSCEEEEEECT
T ss_pred ---eCCCEEEEEcCC-------CCEEEEEeCCCCCEEEEEEcC
Confidence 445999999965 566778899999999999998
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=285.20 Aligned_cols=262 Identities=19% Similarity=0.288 Sum_probs=213.6
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 212 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~ 212 (496)
...+|.+.|++++|+| ++++||+|+.||.|+|||+... ..+....+.+|.. .|++++|+++ +++|+
T Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 6 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA 73 (379)
T ss_dssp CEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred EecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCC----------cceeeeEecCCCC-cEEEEEeCCCCCCCEEE
Confidence 3468999999999999 8889999999999999999743 1145667889987 7999999987 89999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--C
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S 290 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~ 290 (496)
+|+.||.|++||+.++.. .....+..|...|.+++|+|+ +
T Consensus 74 s~~~dg~v~iwd~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp EEETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC
T ss_pred EeccCCEEEEEEcCCCce--------------------------------------eEeeeecCCCcceEEEEeCCCCCC
Confidence 999999999999975421 123566779999999999998 6
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC------------CCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~------------~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
.+|++++.|+.|++||++.........+..|...|.+++|+|. ++.+|++|+.||.|++||++....
T Consensus 116 -~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 116 -PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp -SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred -CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 7999999999999999998864455566789999999999994 489999999999999999987221
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 435 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 435 (496)
....+..+.+|...|.+++|+|+ +. +|++++.||.|+|||+...... ....+.....|...|.+
T Consensus 195 --~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~~v~~ 261 (379)
T 3jrp_A 195 --TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGP----------WKKTLLKEEKFPDVLWR 261 (379)
T ss_dssp --EEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSC----------CEEEESSSSCCSSCEEE
T ss_pred --ceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCcc----------ceeeeeccccCCCcEEE
Confidence 01245678889999999999999 55 6789999999999999874211 01222333458889999
Q ss_pred EEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
++|+|++.+++ +++.||.|+||++.
T Consensus 262 ~~~s~~g~~l~--------~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 262 ASWSLSGNVLA--------LSGGDNKVTLWKEN 286 (379)
T ss_dssp EEECSSSCCEE--------EEESSSSEEEEEEE
T ss_pred EEEcCCCCEEE--------EecCCCcEEEEeCC
Confidence 99999988766 34446999999987
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.8e-36 Score=289.13 Aligned_cols=280 Identities=15% Similarity=0.230 Sum_probs=218.4
Q ss_pred ecCCCceeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC----CCcceeeeecCC--
Q 010997 137 IIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPT-- 207 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~---~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~----~~~v~~l~~~p~-- 207 (496)
.+|.+.|++++|+|. ....+++++.++.|+|||+.+. .....+..|. ...|++++|+|+
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ------------GEIRLLQSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG------------GCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC------------cEEEeeeeccccCCCCcEEEEEeccCCC
Confidence 379999999999983 3445555666679999999876 3334444332 236999999999
Q ss_pred --CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997 208 --EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (496)
Q Consensus 208 --~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (496)
+++|++|+.||.|++||+.++. .+..+.+|...|.+++
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~----------------------------------------~~~~~~~~~~~i~~~~ 122 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQ----------------------------------------CIKHYVGHGNAINELK 122 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCC----------------------------------------EEEEEESCCSCEEEEE
T ss_pred CCCCEEEEecCCCEEEEEEchhce----------------------------------------EeeeecCCCCcEEEEE
Confidence 6689999999999999987532 2366788999999999
Q ss_pred Ecc-CCCceEEEEcCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 286 FCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 286 ~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
|+| ++ .+|++++.||.|++||+++++ ....+ ..|...|.+++|+| ++.+|++++.||.|++||+++
T Consensus 123 ~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~------ 192 (366)
T 3k26_A 123 FHPRDP-NLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS------ 192 (366)
T ss_dssp ECSSCT-TEEEEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCS------
T ss_pred ECCCCC-CEEEEEeCCCeEEEEEeecCe--EEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCC------
Confidence 999 55 899999999999999999876 44554 57999999999999 899999999999999999987
Q ss_pred CCCce----------------------------EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCC
Q 010997 362 GSPIN----------------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413 (496)
Q Consensus 362 ~~~~~----------------------------~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~ 413 (496)
+..+. ....|...|.+++|+ +. +|++++.|+.|++||+...........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccc
Confidence 33332 233499999999999 44 678999999999999987533222111
Q ss_pred CCCCCCCeeEEEecCCCCCcceEEecCC--CCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH----HHHhc--
Q 010997 414 RTTNYPAGLFFQHAGHRDKVVDFHWNAS--DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA----ELEKF-- 485 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~h~~~V~~~~~~p~--~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~----~l~~h-- 485 (496)
. .......+..+.+|...|++++|+|+ +.++ + +|+.||.|++||+.. ++.+. .+.+|
T Consensus 270 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l-~-------~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~ 334 (366)
T 3k26_A 270 P-SESNVTILGRFDYSQCDIWYMRFSMDFWQKML-A-------LGNQVGKLYVWDLEV------EDPHKAKCTTLTHHKC 334 (366)
T ss_dssp T-TCCCEEEEEEEECSSCCSSCCCCEECTTSSEE-E-------EECTTSCEEEEECCS------SSGGGCEEEEECCTTC
T ss_pred c-CCcchheeccccccCCcEEEEEEcCCCCCcEE-E-------EEecCCcEEEEECCC------CCCccccceEEccccc
Confidence 1 11233567778899999999999998 6654 4 455569999999983 33333 66777
Q ss_pred cceEEEeccCC
Q 010997 486 KAHVISCTSKP 496 (496)
Q Consensus 486 ~~~v~~~~~sP 496 (496)
..+|.+++|+|
T Consensus 335 ~~~v~~~~~s~ 345 (366)
T 3k26_A 335 GAAIRQTSFSR 345 (366)
T ss_dssp CSCEEEEEECT
T ss_pred CCceEEEEeCC
Confidence 78999999997
No 53
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-34 Score=282.50 Aligned_cols=296 Identities=13% Similarity=0.148 Sum_probs=230.1
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
+..++.|.| ..|+.| +.+..+.||+...... ..+........+|.+.|++
T Consensus 18 ~i~~~~~~~----------~~l~s~-----~~dg~i~iw~~~~~~~---------------~~~~~~~~~~~~h~~~v~~ 67 (397)
T 1sq9_A 18 DIFSVSACN----------SFTVSC-----SGDGYLKVWDNKLLDN---------------ENPKDKSYSHFVHKSGLHH 67 (397)
T ss_dssp CEEEEEECS----------SEEEEE-----ETTSEEEEEESBCCTT---------------CCGGGGEEEEECCTTCEEE
T ss_pred CeEEEEecC----------CeEEEE-----cCCCEEEEEECCCccc---------------ccCCCcceEEecCCCcEEE
Confidence 667788766 244333 3577899998653211 1112234566689999999
Q ss_pred EEecCCC----C---cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC----CCcceeeeec----CCCCc
Q 010997 146 IRELPQN----T---KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMC----PTEPY 210 (496)
Q Consensus 146 l~~~p~~----~---~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~----~~~v~~l~~~----p~~~~ 210 (496)
++|+| + + .+|++++.||.|++||+.+..... ......+.+|. ...|.+++|+ |++++
T Consensus 68 ~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 68 VDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETK-------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp EEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTC-------CEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred EEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccc-------cccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence 99999 6 8 899999999999999998772100 01156778884 2379999999 99999
Q ss_pred -eEEecCCCcEEEEecCC------ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee-------ec
Q 010997 211 -VLSGGKDKSVVLWSIQD------HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-------NG 276 (496)
Q Consensus 211 -l~sg~~Dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 276 (496)
|++|+.||.|++||+.+ ..... ..+...+ ..
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~ 184 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLN-----------------------------------WSPTLELQGTVESPMT 184 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTC-----------------------------------CCCEEEEEEEECCSSS
T ss_pred EEEEEeCCCcEEEEeCCccccccccceee-----------------------------------ccCcceeeeeeccccC
Confidence 99999999999999986 32211 1111234 45
Q ss_pred CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc---C---CCCeEEEEecCCCCcEEEEEcCC---Cc
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---H---DADLHCVDWNPLDDNLILTGSAD---NS 347 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~---~~~v~~i~~sp~~~~~l~sgs~d---g~ 347 (496)
|...|.+++|+|++ +|++++.||.|++||+++.+ ....+.. | ...|.+++|+| ++.+|++++.| |.
T Consensus 185 ~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~ 259 (397)
T 1sq9_A 185 PSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGC 259 (397)
T ss_dssp SCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEE
T ss_pred CCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCce
Confidence 88999999999988 89999999999999999876 5666667 8 99999999999 89999999999 99
Q ss_pred EEEEeCCCCCCCCCCCCceEecc-------------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC
Q 010997 348 VRMFDRRNLTSNGVGSPINKFEG-------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (496)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~~-------------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~ 414 (496)
|++||+++ +.++..+.. |...|.+++|+|++.+ |++++.||.|+|||+...
T Consensus 260 i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~--------- 323 (397)
T 1sq9_A 260 ITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTK--------- 323 (397)
T ss_dssp EEEEETTT------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTT---------
T ss_pred EEEEECCC------CcccceeccCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEEEEcCCC---------
Confidence 99999998 788889988 9999999999999984 679999999999999874
Q ss_pred CCCCCCeeEEEec------CC---------------CCCcceEEecCCCC---------cEEEEecCCCCCCCCCCeEEE
Q 010997 415 TTNYPAGLFFQHA------GH---------------RDKVVDFHWNASDP---------WTVVSVSDDCDSTGGGGTLQI 464 (496)
Q Consensus 415 ~~~~~~~~~~~~~------~h---------------~~~V~~~~~~p~~~---------~l~~s~s~d~~sgg~Dg~i~i 464 (496)
..+..+. +| ...|++++|+|++. .++++++. ||.|+|
T Consensus 324 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~-------dg~i~i 390 (397)
T 1sq9_A 324 ------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL-------DRSIRW 390 (397)
T ss_dssp ------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET-------TTEEEE
T ss_pred ------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC-------CCcEEE
Confidence 4455555 66 89999999999873 45665544 599999
Q ss_pred eecC
Q 010997 465 WRMS 468 (496)
Q Consensus 465 w~~~ 468 (496)
|++.
T Consensus 391 w~~~ 394 (397)
T 1sq9_A 391 FREA 394 (397)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 9997
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.9e-35 Score=281.62 Aligned_cols=329 Identities=9% Similarity=0.112 Sum_probs=219.5
Q ss_pred hCcCCCCcceEeccCCcccCCCcceEEEEEEe-e--cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEE
Q 010997 60 NHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE-Q--TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKT 136 (496)
Q Consensus 60 ~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (496)
.+++..|.+++.|.|+ .+++.+. . +..+.+|.|.+|++......... . ........+
T Consensus 10 ~~~~g~PV~sv~fs~d---------g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~--~---------~~~~~~~~l 69 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNN---------DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE--Q---------FHILSEFAL 69 (365)
T ss_dssp EEECSSCEEEEEEEET---------TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH--H---------EEEEEEEEC
T ss_pred ecCCCCCEEEEEEeCC---------CcEEEEECCCccccCCCCEEEEEEEcCCCcceee--e---------eeeeeEEEc
Confidence 3567789999999886 3444432 1 22246889999997643221100 0 001122344
Q ss_pred ecCCCceeEEEecCCCCcEEEEE-----------eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec
Q 010997 137 IIHPGEVNRIRELPQNTKIVATH-----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 205 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~-----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~ 205 (496)
.+|...|.++++.+ +.+++| +.|+.+++|++............ ........+.. .+.+++|+
T Consensus 70 ~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~v~fS 142 (365)
T 4h5i_A 70 EDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS---VDFDASTNADD-YTKLVYIS 142 (365)
T ss_dssp CTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE---ECSSCCCCTTC-CEEEEEEC
T ss_pred cCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee---eceeecCCccc-CEEEEEEc
Confidence 57888999998754 456655 45678999998765321110000 00001112222 47899999
Q ss_pred CCCCceE--EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997 206 PTEPYVL--SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 206 p~~~~l~--sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
|||++|+ +++.|++|+|||+.++.. +..+ .|...|.+
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~~~~----------------------------------------~~~~-~~~~~V~~ 181 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSDLTE----------------------------------------KFEI-ETRGEVKD 181 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTTTEE----------------------------------------EEEE-ECSSCCCE
T ss_pred CCCCEEEEEECCCCCEEEEeECCCCcE----------------------------------------EEEe-CCCCceEE
Confidence 9999876 455799999999976432 2333 47788999
Q ss_pred EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC----cEEEEeCCCCCCC
Q 010997 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRNLTSN 359 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg----~i~iwd~~~~~~~ 359 (496)
|+|+|++ .++++++.+ .+++|+..++..........|...|.+++|+| ++.++++++.|+ .+++||+......
T Consensus 182 v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~ 258 (365)
T 4h5i_A 182 LHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS 258 (365)
T ss_dssp EEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred EEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec
Confidence 9999999 788888855 56677777766333344567889999999999 999999999887 6888998762100
Q ss_pred CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCCcceEEe
Q 010997 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHW 438 (496)
Q Consensus 360 ~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~ 438 (496)
......+.+|...|++++|+|+|. +||+|+.|+.|+|||+.+. .++.. +.+|...|++++|
T Consensus 259 --~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~---------------~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 259 --VLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDL---------------SMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp --EEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTT---------------EEEEEETTSSSSCEEEEEE
T ss_pred --ceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCC---------------cEEEEecCcccCCEEEEEE
Confidence 112456778999999999999998 5789999999999999874 44554 5799999999999
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC--CchHHHHHHHhc
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR--PQDEVLAELEKF 485 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~--~~~~~~~~l~~h 485 (496)
+|++.+| || ||.|++|+||++...... .-.+.+.+|+.|
T Consensus 321 Spdg~~l-aS-------~S~D~tvrvw~ip~~~~~~~s~~~~l~kl~~~ 361 (365)
T 4h5i_A 321 SPDSTYV-AS-------VSAANTIHIIKLPLNYANYTSMKQKISKLEHH 361 (365)
T ss_dssp CTTSCEE-EE-------EETTSEEEEEECCTTTTC--------------
T ss_pred CCCCCEE-EE-------EeCCCeEEEEEcCCCCcCccCccccceeeecc
Confidence 9988765 54 445599999999754222 223445555544
No 55
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.6e-35 Score=305.24 Aligned_cols=265 Identities=17% Similarity=0.281 Sum_probs=203.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.....+|.+.|++++|+| ++++|++|+.||+|+|||+.++ .....+.+|.. .|.+++|+|++++|+
T Consensus 423 ~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l~ 488 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAG------------VSTRRFVGHTK-DVLSVAFSLDNRQIV 488 (694)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEECTTSSCEE
T ss_pred cceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------cceeEEeCCCC-CEEEEEEeCCCCEEE
Confidence 345678999999999999 8899999999999999999887 56678899998 699999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC-
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA- 291 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~- 291 (496)
||+.|++|++||........ ......+|...|.+++|+|++.
T Consensus 489 s~s~D~~i~iwd~~~~~~~~-------------------------------------~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 489 SASRDRTIKLWNTLGECKYT-------------------------------------ISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEETTSCEEEECTTSCEEEE-------------------------------------ECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEeCCCEEEEEECCCCccee-------------------------------------eccCCCCCCCcEEEEEEeCCCCc
Confidence 99999999999975321100 0011246888999999999862
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
..|++++.|++|++||++..+ ....+.+|...|++++|+| ++.+|++|+.||.|++||+++ +..+..+. +
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~------~~~~~~~~-~ 601 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE------GKKLYSLE-A 601 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTT------TEEEECCB-C
T ss_pred ceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC------CceEEEec-C
Confidence 479999999999999999877 6677889999999999999 999999999999999999998 67777766 4
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCC----CCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN----YPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
...|.+++|+|++. ++++++ |+.|+|||+............... ...........+...+++++|+|++.+|+
T Consensus 602 ~~~v~~~~~sp~~~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~- 678 (694)
T 3dm0_A 602 NSVIHALCFSPNRY-WLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF- 678 (694)
T ss_dssp SSCEEEEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE-
T ss_pred CCcEEEEEEcCCCc-EEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE-
Confidence 56799999999987 555554 677999999874221110000000 00000000112223478999999888765
Q ss_pred EecCCCCCCCCCCeEEEeecC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
||+.||+|+||++.
T Consensus 679 -------sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 679 -------SGYTDGVIRVWGIG 692 (694)
T ss_dssp -------EEETTSEEEEEEC-
T ss_pred -------EEcCCCeEEEEecc
Confidence 55556999999986
No 56
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.1e-35 Score=279.51 Aligned_cols=280 Identities=17% Similarity=0.294 Sum_probs=215.9
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEE
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLS 213 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~s 213 (496)
..+|.+.|++++|+| ++++||+|+.||.|+|||+.+.... .+....+.+|.. .|++++|+| ++.+|++
T Consensus 7 ~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~~~-~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSN--------WELSDSWRAHDS-SIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp ECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCC--------EEEEEEEECCSS-CEEEEEECCGGGCSEEEE
T ss_pred CcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCc--------ceecceeccCCC-cEEEEEEcCCCCCCEEEE
Confidence 358999999999999 8899999999999999999875211 134567788988 799999999 5899999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--CC
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SA 291 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~ 291 (496)
|+.||.|++||++++..... ......+..+..|...|.+++|+|+ +
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 124 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECS-------------------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLG- 124 (351)
T ss_dssp EETTSCEEEEEECTTSCTTS-------------------------------SCSEEEEEEECCCSSCEEEEEECCGGGC-
T ss_pred EcCCCeEEEEecCCCccccc-------------------------------ccCcceeeeecccCCceeEEEEcCCCCC-
Confidence 99999999999986432110 0122345677889999999999998 7
Q ss_pred ceEEEEcCCCeEEEEEccCCCcccee-----------eeccCCCCeEEEEecCC--CCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIK-----------VEKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~v~~i~~sp~--~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
.+|++++.||.|++||++++...... ....|...+.+++|+|. ++.+|++++.|+.+.+|+.....
T Consensus 125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~- 203 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK- 203 (351)
T ss_dssp SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-
T ss_pred cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-
Confidence 78999999999999999887632111 11257889999999993 38999999999999888877621
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCCC---CEEEEEeCCCcEEEEECCCCCcccCCCCC---------------------
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDKS---SVFGSSAEDGLLNIWDYEKVGKKVEQGPR--------------------- 414 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~---~llas~~~dg~i~iwd~~~~~~~~~~~~~--------------------- 414 (496)
...+..+.+|...|++++|+|++. .+|++++.||.|++||++...........
T Consensus 204 ---~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 204 ---LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp ---EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred ---eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 223778889999999999999983 36789999999999999874221111000
Q ss_pred ----------CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 415 ----------TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 415 ----------~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
........+..+.+|...|++++|+|++.+++ +|+.||.|+||++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--------s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS--------SAGDDGKVRLWKATY 337 (351)
T ss_dssp ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE--------EEETTSCEEEEEECT
T ss_pred ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE--------EecCCCcEEEEecCc
Confidence 00012256777889999999999999887655 455569999999983
No 57
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-35 Score=285.04 Aligned_cols=301 Identities=16% Similarity=0.265 Sum_probs=225.3
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
|..++.|.|.-.. ....++.+. .++.+.||+...... + ..+.......|.+.|++
T Consensus 20 ~v~~i~~~p~~~~----~~~~~~~~~-----~~~~v~vw~~~~~~~-------~---------~~~~~~~~~~~~~~v~~ 74 (366)
T 3k26_A 20 PLFGVQFNWHSKE----GDPLVFATV-----GSNRVTLYECHSQGE-------I---------RLLQSYVDADADENFYT 74 (366)
T ss_dssp CEEEEEECTTCCT----TSCEEEEEE-----ETTEEEEEEECGGGC-------E---------EEEEEEECSCTTCCEEE
T ss_pred ceEEEEEecccCC----CCceEEEEC-----CCCEEEEEEcCCCcE-------E---------EeeeeccccCCCCcEEE
Confidence 6678888875111 112343332 233788998653111 0 01112222348899999
Q ss_pred EEecCCC---CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEEecCCCcEE
Q 010997 146 IRELPQN---TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVV 221 (496)
Q Consensus 146 l~~~p~~---~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~~Dg~i~ 221 (496)
++|+|.. +.+|++|+.||.|++||+.+. +....+.+|.. .|.+++|+| ++.+|++|+.||.|+
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~ 141 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALR 141 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEE
Confidence 9999932 679999999999999999887 66778889987 799999999 899999999999999
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee---ecCCCceeEEEEccCCCceEEEEc
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY---NGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
+||++++.. +..+ .+|...|.+++|+|++ .+|++++
T Consensus 142 iwd~~~~~~----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 180 (366)
T 3k26_A 142 LWNIQTDTL----------------------------------------VAIFGGVEGHRDEVLSADYDLLG-EKIMSCG 180 (366)
T ss_dssp EEETTTTEE----------------------------------------EEEECSTTSCSSCEEEEEECTTS-SEEEEEE
T ss_pred EEEeecCeE----------------------------------------EEEecccccccCceeEEEECCCC-CEEEEec
Confidence 999975432 1333 5789999999999998 7899999
Q ss_pred CCCeEEEEEccCCCcc--------------------------ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997 299 DDSCLILWDARVGTSP--------------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~--------------------------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd 352 (496)
.||.|++||+++++.. .......|...|.+++|+ +.+|++++.||.|++||
T Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd 257 (366)
T 3k26_A 181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWK 257 (366)
T ss_dssp TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEE
T ss_pred CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEe
Confidence 9999999999875411 111223399999999998 56999999999999999
Q ss_pred CCCCCCC--------CCCCCceEeccCCCCEEEEEEcCC--CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997 353 RRNLTSN--------GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (496)
Q Consensus 353 ~~~~~~~--------~~~~~~~~~~~h~~~i~~l~~sp~--~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 422 (496)
+++.... .....+..+..|...|.+++|+|+ +. +|++|+.||.|++||+...... ...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~~~~-----------~~~ 325 (366)
T 3k26_A 258 PGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEVEDPH-----------KAK 325 (366)
T ss_dssp ESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEEECCSSSGG-----------GCE
T ss_pred CCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCCCCCc-----------ccc
Confidence 9874310 001337778889999999999999 87 5789999999999999874211 124
Q ss_pred EEEecCC--CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 423 FFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 423 ~~~~~~h--~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
...+.+| ...|++++|+|++.+++ +|+.||.|+|||+.
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILI--------AVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEE--------EEETTSEEEEEEC-
T ss_pred ceEEcccccCCceEEEEeCCCCCeEE--------EEeCCCEEEEEEec
Confidence 4556676 78999999999887655 44455999999985
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-34 Score=281.57 Aligned_cols=285 Identities=17% Similarity=0.224 Sum_probs=217.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE--ecCCCCcceeeeecC-CCC
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCP-TEP 209 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l--~~h~~~~v~~l~~~p-~~~ 209 (496)
.....+|.+.|++++|+|++.++||+|+.||.|+|||+.+. .....+ .+|.. .|.+++|+| +++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~h~~-~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ------------NKTSFIQGMGPGD-AITGMKFNQFNTN 132 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST------------TCEEEECCCSTTC-BEEEEEEETTEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc------------ccceeeecCCcCC-ceeEEEeCCCCCC
Confidence 33556899999999999943389999999999999999877 333344 36877 799999999 678
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+|++|+.|+.|++||+.+... ........|...|.+++|+|+
T Consensus 133 ~l~s~~~d~~i~iwd~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGSVI--------------------------------------QVFAKTDSWDYWYCCVDVSVS 174 (383)
T ss_dssp EEEEEETTTEEEEEETTSCEE--------------------------------------EEEECCCCSSCCEEEEEEETT
T ss_pred EEEEEeCCCEEEEEECCCCce--------------------------------------EEEeccCCCCCCeEEEEECCC
Confidence 999999999999999974211 001112345588999999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
+ .+|++++.|+.|++||++ +. ....+..|...|.+++|+| ++. +|++|+.|+.|++||+++.... ...+..+
T Consensus 175 ~-~~l~~~~~d~~i~i~d~~-~~--~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~ 247 (383)
T 3ei3_B 175 R-QMLATGDSTGRLLLLGLD-GH--EIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM 247 (383)
T ss_dssp T-TEEEEEETTSEEEEEETT-SC--EEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE
T ss_pred C-CEEEEECCCCCEEEEECC-CC--EEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe
Confidence 8 799999999999999994 33 4667778999999999999 676 9999999999999999973311 2344445
Q ss_pred ccCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE----ecCCCCCcceEEecCCCC
Q 010997 369 EGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ----HAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 369 ~~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~V~~~~~~p~~~ 443 (496)
+|...|.+++|+| ++. +|++++.|+.|++||++..... ..+.. ...|...+. +.|+|++.
T Consensus 248 -~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~p~~~ 312 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKP------------DQIIIHPHRQFQHLTPIK-ATWHPMYD 312 (383)
T ss_dssp -ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSC------------SEEEECCBCCCTTSCCCC-CEECSSSS
T ss_pred -cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccc------------cccccccccccccccceE-EeccCCCC
Confidence 6999999999999 888 5679999999999999875221 11111 123455555 47777666
Q ss_pred cEEEEecCCC-CCCCCCCeEEEeecCCCCcCCchHHHHHHHh--ccceEEEeccCC
Q 010997 444 WTVVSVSDDC-DSTGGGGTLQIWRMSDLIYRPQDEVLAELEK--FKAHVISCTSKP 496 (496)
Q Consensus 444 ~l~~s~s~d~-~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~--h~~~v~~~~~sP 496 (496)
.++++.+.|. .+|+.||.|+|||+. +++.+.++.+ |...+..++|+|
T Consensus 313 ~~~~~~s~dg~~s~s~d~~i~iwd~~------~~~~~~~l~~~~~~~~~~~~~~s~ 362 (383)
T 3ei3_B 313 LIVAGRYPDDQLLLNDKRTIDIYDAN------SGGLVHQLRDPNAAGIISLNKFSP 362 (383)
T ss_dssp EEEEECBCCTTTCTTCCCCEEEEETT------TCCEEEEECBTTBCSCCCEEEECT
T ss_pred ceEEEecCCcccccCCCCeEEEEecC------CCceeeeecCCCCCceEEEEEEec
Confidence 6555443321 156678999999998 5666777776 456677779987
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=283.24 Aligned_cols=284 Identities=14% Similarity=0.230 Sum_probs=218.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCccccCCCCCCCCceE-EecCCCCcceeeeecCC-
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPT- 207 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-l~~h~~~~v~~l~~~p~- 207 (496)
.....+|.+.|++++|+|++..++++|+. ||.|+|||+.++ +.... ..+|.. .|.+++|+|+
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~------------~~~~~~~~~~~~-~v~~~~~~~~~ 77 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG------------DLKLLREIEKAK-PIKCGTFGATS 77 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS------------SEEEEEEEEESS-CEEEEECTTCC
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC------------cccceeeecccC-cEEEEEEcCCC
Confidence 34446799999999999955567778877 999999999876 22222 336766 7999999998
Q ss_pred --CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997 208 --EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (496)
Q Consensus 208 --~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (496)
+.+|++|+.||.|++||+.++. .++..+.+|...|.++.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~---------------------------------------~~~~~~~~~~~~v~~~~ 118 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPE---------------------------------------MPVYSVKGHKEIINAID 118 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCS---------------------------------------SCSEEECCCSSCEEEEE
T ss_pred CCCceEEEecCCCeEEEEeCCCCC---------------------------------------ccEEEEEecccceEEEe
Confidence 6999999999999999997542 12366788999999996
Q ss_pred E------ccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC----CeEEEE----ecCCCCcEEEEEcCCCcEEEE
Q 010997 286 F------CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLHCVD----WNPLDDNLILTGSADNSVRMF 351 (496)
Q Consensus 286 ~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~i~----~sp~~~~~l~sgs~dg~i~iw 351 (496)
| +|++ .+|++++.||.|++||++.+..+ ...+..|.. .+.+++ |+| ++.+|++|+.||.|++|
T Consensus 119 ~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 119 GIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLF 195 (357)
T ss_dssp EESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEE
T ss_pred eccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEE
Confidence 5 5677 78999999999999999987632 334434443 899998 788 89999999999999999
Q ss_pred eCCCCCCCCCCCCceEeccCCCCEEEEEEcC---CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (496)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp---~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (496)
|+++ +.. .....|...|.+++|+| ++. .|++++.||.|++||++...... ........+
T Consensus 196 d~~~------~~~-~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~ 257 (357)
T 3i2n_A 196 DLRN------MAL-RWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHPTK----------GFASVSEKA 257 (357)
T ss_dssp ETTT------TEE-EEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEETTT----------EEEEEEEEC
T ss_pred ECcc------Cce-eeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCccc----------ceeeeccCC
Confidence 9998 444 44567899999999999 777 46799999999999998741110 011224558
Q ss_pred CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC-------------chHHHHHHHhccceEEEeccC
Q 010997 429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP-------------QDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~-------------~~~~~~~l~~h~~~v~~~~~s 495 (496)
|...|++++|+|++..++++++. ||.|++|++....... ..+.+..+.+|..+|.+++|+
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGG-------AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEET-------TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred CcCCEEEEEECCCCCcEEEEEeC-------CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 99999999999998866775555 4999999997432110 114566788899999999999
Q ss_pred C
Q 010997 496 P 496 (496)
Q Consensus 496 P 496 (496)
|
T Consensus 331 ~ 331 (357)
T 3i2n_A 331 P 331 (357)
T ss_dssp S
T ss_pred C
Confidence 7
No 60
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=294.41 Aligned_cols=286 Identities=15% Similarity=0.232 Sum_probs=200.5
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC------------CCcceeeee
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------------DNAEFALAM 204 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~~v~~l~~ 204 (496)
+.|.+.|++++|+| ++++||+|+.||.|+|||+.+...... ......+....+.+|. . .|++++|
T Consensus 25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~V~~l~~ 101 (447)
T 3dw8_B 25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQS-HSRGEYNVYSTFQSHEPEFDYLKSLEIEE-KINKIRW 101 (447)
T ss_dssp CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----C-CCCCCEEEEEEEECCCCEEEGGGTEEECC-CCCEEEE
T ss_pred ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCc-ccccceeEecccccccccccccccccccC-ceEEEEE
Confidence 45788999999999 899999999999999999987631110 0001123466888997 5 6999999
Q ss_pred cCCC--CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC---------cCCeee
Q 010997 205 CPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS---------VGPRGI 273 (496)
Q Consensus 205 ~p~~--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 273 (496)
+|++ .+|++|+.||+|++||+.+.......... ....+.. . ....+....... ..+...
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--~~~~g~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL--KEEDGRY---R-----DPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC--C----------------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecc--cCccccc---c-----CcccccceEeccccchheeeeccceEE
Confidence 9998 78999999999999999864331100000 0000000 0 000000000000 011122
Q ss_pred -eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee-------eeccCCCCeEEEEecCCCC-cEEEEEcC
Q 010997 274 -YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-------VEKAHDADLHCVDWNPLDD-NLILTGSA 344 (496)
Q Consensus 274 -~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~i~~sp~~~-~~l~sgs~ 344 (496)
..+|...|.+++|+|++ .+|++| .|+.|++||++.... ... .+..|...|++++|+| ++ .+|++|+.
T Consensus 172 ~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~ 247 (447)
T 3dw8_B 172 FANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSS 247 (447)
T ss_dssp ECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEET
T ss_pred eccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECC-CCCcEEEEEeC
Confidence 36799999999999998 788888 799999999985431 222 2568999999999999 76 99999999
Q ss_pred CCcEEEEeCCCCCCCCCCCC----ceEeccCCC------------CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997 345 DNSVRMFDRRNLTSNGVGSP----INKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~----~~~~~~h~~------------~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~ 408 (496)
||.|++||+++ +.. +..+..|.. .|.+++|+|++.+ |++++. +.|+|||++..+
T Consensus 248 dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~-- 317 (447)
T 3dw8_B 248 KGTIRLCDMRA------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMEN-- 317 (447)
T ss_dssp TSCEEEEETTT------CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCS--
T ss_pred CCeEEEEECcC------CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCc--
Confidence 99999999998 444 678888876 9999999999985 668887 999999998632
Q ss_pred cCCCCCCCCCCCeeEEEecCCCCC---------------cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 409 VEQGPRTTNYPAGLFFQHAGHRDK---------------VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~h~~~---------------V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
..+..+.+|... +..++|+|++.+++ +|+.||.|+|||+..
T Consensus 318 ------------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~--------s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 318 ------------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVM--------TGSYNNFFRMFDRNT 373 (447)
T ss_dssp ------------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEE--------EECSTTEEEEEETTT
T ss_pred ------------cccceeeccccccccccccccccccccceEEEECCCCCEEE--------EeccCCEEEEEEcCC
Confidence 223334555432 23499999988764 555569999999974
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-35 Score=314.58 Aligned_cols=271 Identities=21% Similarity=0.292 Sum_probs=234.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
....+|.+.|.+++|+| ++.+||+|+.||.|+|||+.++ .....+.+|.. .|.+++|+|++++|++
T Consensus 7 ~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~ 72 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIV 72 (814)
T ss_dssp EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEE
T ss_pred eeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCC------------ceEEEEecCCC-cEEEEEEeCCCCEEEE
Confidence 45578999999999999 8899999999999999999887 56678889987 7999999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.||.|++||+.++. .+..+.+|.+.|.+++|+|++ .+
T Consensus 73 ~~~dg~i~vw~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~s~~~-~~ 111 (814)
T 3mkq_A 73 GSDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PY 111 (814)
T ss_dssp EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SE
T ss_pred EeCCCeEEEEECCCCc----------------------------------------EEEEEecCCCCEEEEEEeCCC-CE
Confidence 9999999999997543 236678899999999999999 68
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC-
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 372 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~- 372 (496)
|++++.||.|++||++++.. ....+..|...|.+++|+|.++.+|++++.||.|++||++. +.....+..+.
T Consensus 112 l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~ 184 (814)
T 3mkq_A 112 VLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQE 184 (814)
T ss_dssp EEEEETTSEEEEEEGGGTSE-EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------SSCSEEEECCCT
T ss_pred EEEEcCCCEEEEEECCCCce-EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcceeEEecCCC
Confidence 99999999999999988642 45667789999999999996678999999999999999987 56666666554
Q ss_pred CCEEEEEEcC--CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 373 AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 373 ~~i~~l~~sp--~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
..|.+++|+| ++. +|++++.||.|++||+... ..+..+.+|...|.+++|+|++..++
T Consensus 185 ~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~---- 244 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPIII---- 244 (814)
T ss_dssp TCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSEEE----
T ss_pred CCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE----
Confidence 8899999999 887 5679999999999999874 45667788999999999999887554
Q ss_pred CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|+.||.|++|++. +++.+..+..|...|.+++|+|
T Consensus 245 ----~~~~dg~v~vwd~~------~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 245 ----SGSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp ----EEETTSCEEEEETT------TCSEEEEECCSSSSEEEEEECT
T ss_pred ----EEeCCCeEEEEECC------CCcEEEEeecCCCcEEEEEEcc
Confidence 44456999999998 5667777888889999999987
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-36 Score=294.29 Aligned_cols=278 Identities=14% Similarity=0.292 Sum_probs=222.6
Q ss_pred CCCceeEEEecCCCCcEEEEE----------eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATH----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~ 208 (496)
+...|.+++|+|++..+||+| +.||.|+|||+.+.... ++...+ .|.. .|++++|+|++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------~~~~~~-~~~~-~v~~~~~s~~~ 79 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------KPIASL-QVDS-KFNDLDWSHNN 79 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------SCSCCC-CCSS-CEEEEEECSSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------cEEEEE-ecCC-ceEEEEECCCC
Confidence 345799999999444599999 89999999999876211 122223 4655 69999999999
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
++|++|+.||.|++||+..... ....+..+.+|...|.+++|+|
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~------------------------------------~~~~~~~~~~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANN------------------------------------AINSMARFSNHSSSVKTVKFNA 123 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTS------------------------------------CCCEEEECCCSSSCCCEEEECS
T ss_pred CeEEEEccCCeEEEeecccccc------------------------------------cccchhhccCCccceEEEEEcC
Confidence 9999999999999999975210 1123466788999999999999
Q ss_pred CCCceEEEEcCCCeEEEEEccCCC------ccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGT------SPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~------~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
++..+|++++.||.|++||+++.. ... ......|...|.+++|+|..+.+|++++.||.|++||+++
T Consensus 124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~------ 197 (416)
T 2pm9_A 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA------ 197 (416)
T ss_dssp SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT------
T ss_pred CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC------
Confidence 844899999999999999998875 221 1223578999999999993389999999999999999998
Q ss_pred CCCceEeccC------CCCEEEEEEcCCCCCEEEEEeCCC---cEEEEECCCCCcccCCCCCCCCCCCeeEEEec-CCCC
Q 010997 362 GSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRD 431 (496)
Q Consensus 362 ~~~~~~~~~h------~~~i~~l~~sp~~~~llas~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~ 431 (496)
+..+..+..| ...|.+++|+|++..+|++++.|+ .|++||++.... .+..+. +|..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~ 263 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--------------PLQTLNQGHQK 263 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--------------CSBCCCSCCSS
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--------------CcEEeecCccC
Confidence 6777888766 789999999999877888999998 999999987421 222345 8999
Q ss_pred CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.|.+++|+|.+..++++++. ||.|++||+. .++.+.++.+|...|.+++|+|
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~-------dg~v~~wd~~------~~~~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGR-------DNTVLLWNPE------SAEQLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp CEEEEEECSSCSSCEEEEES-------SSEEEEECSS------SCCEEEEEECSSSCCCCEEECT
T ss_pred ceeEEEeCCCCCCeEEEEeC-------CCCEEEeeCC------CCccceeecCCCCceEEEEECC
Confidence 99999999944444554444 5999999998 5677888889999999999997
No 63
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-33 Score=267.61 Aligned_cols=246 Identities=17% Similarity=0.332 Sum_probs=206.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
....+|.+.|.+++|+| ++++|++++.||.|++||+.+.. ......+.+|.. .|.+++|+|++++|++
T Consensus 91 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~-~i~~~~~~~~~~~l~~ 158 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAP-ACYALAISPDSKVCFS 158 (337)
T ss_dssp EECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSS-CEEEEEECTTSSEEEE
T ss_pred ccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCC-ceEEEEECCCCCEEEE
Confidence 33447999999999999 88899999999999999998762 124556778877 6899999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
++.||.|++||++++. ....+..|...|.+++|+|++ .+
T Consensus 159 ~~~dg~v~~~d~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~ 197 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQT----------------------------------------LVRQFQGHTDGASCIDISNDG-TK 197 (337)
T ss_dssp EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS-SE
T ss_pred EeCCCcEEEEeCCCCc----------------------------------------eeeeeecccCceEEEEECCCC-CE
Confidence 9999999999997542 235677899999999999998 78
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (496)
|++++.||.|++||+++++ ..... .+...+.+++|+| ++.+|++++.||.|++||++. .....+..|..
T Consensus 198 l~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~ 266 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK-------PDKYQLHLHES 266 (337)
T ss_dssp EEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS-------SCEEEECCCSS
T ss_pred EEEEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC-------CCeEEEcCCcc
Confidence 9999999999999999876 34433 5788999999999 899999999999999999997 33567788999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 453 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~ 453 (496)
.|.+++|+|++.. |++++.||.|++||+... ..+ ....|...|.+++|+|++.+++
T Consensus 267 ~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~---------------~~~-~~~~~~~~v~~~~~s~~~~~l~------- 322 (337)
T 1gxr_A 267 CVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG---------------ASI-FQSKESSSVLSCDISVDDKYIV------- 322 (337)
T ss_dssp CEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEE-EEEECSSCEEEEEECTTSCEEE-------
T ss_pred ceeEEEECCCCCE-EEEecCCCcEEEEECCCC---------------eEE-EEecCCCcEEEEEECCCCCEEE-------
Confidence 9999999999984 679999999999999874 222 2345788999999999887655
Q ss_pred CCCCCCCeEEEeecC
Q 010997 454 DSTGGGGTLQIWRMS 468 (496)
Q Consensus 454 ~sgg~Dg~i~iw~~~ 468 (496)
+++.||.|++|++.
T Consensus 323 -~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 323 -TGSGDKKATVYEVI 336 (337)
T ss_dssp -EEETTSCEEEEEEE
T ss_pred -EecCCCeEEEEEEe
Confidence 44446999999974
No 64
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-34 Score=269.97 Aligned_cols=245 Identities=22% Similarity=0.340 Sum_probs=192.6
Q ss_pred eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997 189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
..+.+|.+ .|++++|+|+|++|++|+.|++|+|||+... ..
T Consensus 3 ~~~~~h~~-~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------------------~~ 43 (297)
T 2pm7_B 3 VIANAHNE-MIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------------------TH 43 (297)
T ss_dssp EECCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------------------CB
T ss_pred eeccCCcC-ceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------------------Cc
Confidence 46778988 7999999999999999999999999998632 11
Q ss_pred CCeeeeecCCCceeEEEEccC-CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEEcCC
Q 010997 269 GPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSAD 345 (496)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~d 345 (496)
..+..+.+|.+.|.+++|++. .+.+|++|+.|++|++||++++.......+..|...|++++|+| + +.+|++|+.|
T Consensus 44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~d 122 (297)
T 2pm7_B 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLVASSD 122 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEEEETT
T ss_pred EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEEEECC
Confidence 234678899999999999864 23799999999999999998875334556678999999999999 5 7899999999
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC------------CCEEEEEeCCCcEEEEECCCCCcccCCCC
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK------------SSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~------------~~llas~~~dg~i~iwd~~~~~~~~~~~~ 413 (496)
|.|++||++... ......+.+|...|.+++|+|++ ..+||+|+.|+.|+|||++....
T Consensus 123 ~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~------ 192 (297)
T 2pm7_B 123 GKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------ 192 (297)
T ss_dssp SEEEEEEBCSSS----CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT------
T ss_pred CcEEEEEecCCC----ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc------
Confidence 999999998732 12246778999999999999973 23678999999999999976311
Q ss_pred CCCCCCCeeEEEecCCCCCcceEEecCCC--CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEE
Q 010997 414 RTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS 491 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~h~~~V~~~~~~p~~--~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~ 491 (496)
...+...+.+|...|.+++|+|++ ..++||++.| ++|+||++.......... +.....|...|.+
T Consensus 193 -----~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D-------~~v~iWd~~~~~~~~~~~-~~~~~~~~~~v~~ 259 (297)
T 2pm7_B 193 -----TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD-------RTCIIWTQDNEQGPWKKT-LLKEEKFPDVLWR 259 (297)
T ss_dssp -----EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-------SCEEEEEESSTTSCCEEE-ESSSSCCSSCEEE
T ss_pred -----eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC-------CcEEEEEeCCCCCcccee-eeecccCCCcEEE
Confidence 112556788999999999999986 4567766655 999999997421000001 1112467889999
Q ss_pred eccCC
Q 010997 492 CTSKP 496 (496)
Q Consensus 492 ~~~sP 496 (496)
++|+|
T Consensus 260 ~~~s~ 264 (297)
T 2pm7_B 260 ASWSL 264 (297)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99998
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.8e-35 Score=288.92 Aligned_cols=253 Identities=15% Similarity=0.189 Sum_probs=193.2
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-CcceeeeecCCCCce
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYV 211 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-~~v~~l~~~p~~~~l 211 (496)
.+...+|.+.|++|+|+|.++++|++|+.||+|+|||+.+. ........|.. ..+.+++|+|++.+|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN------------ILRVFASSDTINIWFCSLDVSASSRMV 224 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC------------EEEEEECCSSCSCCCCCEEEETTTTEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC------------ceeEEeccCCCCccEEEEEECCCCCEE
Confidence 34556899999999999988899999999999999999765 11112222221 246789999999999
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
++|+.||.|++||++... +..+.+|...|++++|+|++.
T Consensus 225 ~~g~~dg~i~~wd~~~~~-----------------------------------------~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 225 VTGDNVGNVILLNMDGKE-----------------------------------------LWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp EEECSSSBEEEEESSSCB-----------------------------------------CCCSBCCSSCEEEEEECTTCS
T ss_pred EEEeCCCcEeeeccCcce-----------------------------------------eEEEecccceEEeeeecCCCc
Confidence 999999999999986321 245678999999999999987
Q ss_pred ceEEEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
.+|++|+.|+.|++||++...... .....+|...|++++|+| ++.+|++|+.||.|+|||+++ +.....+..
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~------~~~~~~~~~ 336 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ------WDCPLGLIP 336 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSS------SSSEEEECC
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCC------CccceEEec
Confidence 789999999999999998876322 223457999999999999 999999999999999999998 566666655
Q ss_pred CCC------CEEEEEEcCCCCCEEEE-----------EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCC
Q 010997 371 HSA------AVLCVQWSPDKSSVFGS-----------SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDK 432 (496)
Q Consensus 371 h~~------~i~~l~~sp~~~~llas-----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~ 432 (496)
|.. .+..+.|+|++..+++. +..++.|++||..++ .++.. ..+|...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---------------~~~~~l~~~~~~~ 401 (435)
T 4e54_B 337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---------------KMMCQLYDPESSG 401 (435)
T ss_dssp CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---------------CEEEEECCSSCCC
T ss_pred ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---------------cEEEEEeCCCCCc
Confidence 432 23345666666643322 223467999999874 33333 3578888
Q ss_pred cceE-EecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 433 VVDF-HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 433 V~~~-~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|.++ +|+|++.++ ++++ |++|+||++.+
T Consensus 402 v~s~~~fspdg~~l-asg~--------d~~i~iW~~~~ 430 (435)
T 4e54_B 402 ISSLNEFNPMGDTL-ASAM--------GYHILIWSQQE 430 (435)
T ss_dssp CCCEEEECTTSSCE-EEEC--------SSEEEECCCC-
T ss_pred EEEEEEECCCCCEE-EEEc--------CCcEEEEECCc
Confidence 9987 699988765 4443 47999999983
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-35 Score=285.94 Aligned_cols=275 Identities=18% Similarity=0.282 Sum_probs=220.0
Q ss_pred cceEEEecCCCceeEEEecCCCCc-EEEEEeCCCcEEEEeC----CCCCCccccCCCCCCCCceEEe----------cCC
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDV----EAQPNRHAVLGATNSRPDLILT----------GHQ 195 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~-~lat~~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~l~----------~h~ 195 (496)
.+.+....|.+.|++++|+| ++. +||+|+.||.|++||+ .++...... .....+. +|.
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKL------TIIAELRHPFALSASSGKTT 108 (425)
T ss_dssp CEECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEE------EEEEEEECCCCCC------C
T ss_pred hhheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccc------cccccccccccccccccCCC
Confidence 34556677889999999999 677 9999999999999999 766310000 0112222 255
Q ss_pred CCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee
Q 010997 196 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 275 (496)
Q Consensus 196 ~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (496)
. .|++++|+|++++|++|+.||.|++||... ..+..+.
T Consensus 109 ~-~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-----------------------------------------~~~~~~~ 146 (425)
T 1r5m_A 109 N-QVTCLAWSHDGNSIVTGVENGELRLWNKTG-----------------------------------------ALLNVLN 146 (425)
T ss_dssp B-CEEEEEECTTSSEEEEEETTSCEEEEETTS-----------------------------------------CEEEEEC
T ss_pred C-ceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------------------------------------Ceeeecc
Confidence 5 699999999999999999999999999432 1235677
Q ss_pred cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCC---------------eEEEEecCCCCcEEE
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD---------------LHCVDWNPLDDNLIL 340 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~i~~sp~~~~~l~ 340 (496)
.|...|.+++|+|++ .+|++++.||.|++||++++. ....+..+... +.+++|+| + ..++
T Consensus 147 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 221 (425)
T 1r5m_A 147 FHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGT--VMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFV 221 (425)
T ss_dssp CCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTE--EEEEECCC---------------CCCBSCCEEEE-T-TEEE
T ss_pred CCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCc--EEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEE
Confidence 899999999999998 789999999999999998876 45555566655 99999998 4 5688
Q ss_pred EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCC
Q 010997 341 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (496)
Q Consensus 341 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 420 (496)
+++.||.|++||++. +..+..+..|...|.+++|+|++. +|++++.|+.|++||+...
T Consensus 222 ~~~~~g~i~~~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--------------- 279 (425)
T 1r5m_A 222 IPGPKGAIFVYQITE------KTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG--------------- 279 (425)
T ss_dssp EECGGGCEEEEETTC------SSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB---------------
T ss_pred EEcCCCeEEEEEcCC------CceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC---------------
Confidence 999999999999998 788889999999999999999998 5679999999999999874
Q ss_pred eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
..+..+.+|...|.+++|+|++ ++++++. ||.|++||+. .++.+..+..|..+|.+++|+|
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~-------d~~i~i~d~~------~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD--KVISCSM-------DGSVRLWSLK------QNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT--EEEEEET-------TSEEEEEETT------TTEEEEEEECTTCCEEEEEECT
T ss_pred ccceEecCCCccEEEEEECCCC--EEEEEeC-------CCcEEEEECC------CCcEeEecccCCccEEEEEEcC
Confidence 3344567899999999999987 5665544 5999999998 5677778888999999999997
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.7e-35 Score=286.58 Aligned_cols=279 Identities=18% Similarity=0.346 Sum_probs=221.7
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEEecCCC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDK 218 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~~Dg 218 (496)
......++++|....++++++.||.|+||++...... ......+.+|.. .|++++|+| ++++|++|+.||
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------~~~~~~~~~h~~-~V~~~~~~p~~~~~l~s~s~dg 104 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------DKNVPLVCGHTA-PVLDIAWCPHNDNVIASGSEDC 104 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------CTTCCCBCCCSS-CEEEEEECTTCTTEEEEEETTS
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC--------CCCCceEecCCC-CEEEEEeCCCCCCEEEEEeCCC
Confidence 3456678888855556667899999999999664211 133446788988 799999999 899999999999
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
+|++||+.++.... ....++..+.+|...|.+++|+|++..+|++++
T Consensus 105 ~v~vw~~~~~~~~~---------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 105 TVMVWEIPDGGLVL---------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp EEEEEECCTTCCSS---------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred eEEEEEccCCCCcc---------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 99999998643211 111345778899999999999999867999999
Q ss_pred CCCeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCC-
Q 010997 299 DDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAA- 374 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~- 374 (496)
.||.|++||+++++ ....+ ..|...|.+++|+| ++.+|++++.||.|++||+++ +..+..+ ..|.+.
T Consensus 152 ~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 152 CDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK------GTVVAEKDRPHEGTR 222 (402)
T ss_dssp TTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT------TEEEEEEECSSCSSS
T ss_pred CCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC------CceeeeeccCCCCCc
Confidence 99999999999877 55566 68999999999999 999999999999999999998 7788888 788776
Q ss_pred EEEEEEcCCCCCEEEEE---eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997 375 VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 375 i~~l~~sp~~~~llas~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
+.+++|+|++. +|++| +.|+.|++||++.... ........|...|.+++|+|++..++++++.
T Consensus 223 ~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 223 PVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEE-------------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp CCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSS-------------CSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccC-------------CceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence 89999999988 56788 7899999999987421 1122233567789999999999888765544
Q ss_pred CCCCCCCCCeEEEeecCCCCcCCchHH-HHHHHhc--cceEEEeccCC
Q 010997 452 DCDSTGGGGTLQIWRMSDLIYRPQDEV-LAELEKF--KAHVISCTSKP 496 (496)
Q Consensus 452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~-~~~l~~h--~~~v~~~~~sP 496 (496)
||.|++|++.. ++. +..+..| ..+|.+++|+|
T Consensus 289 -------dg~i~i~d~~~------~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 289 -------DSSIRYFEITS------EAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp -------CSCEEEEEECS------STTCEEEEEEECCSSCCSEEEECC
T ss_pred -------CCeEEEEEecC------CCcceEeecccccCCcccceEEec
Confidence 59999999983 332 4444444 58899999987
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.9e-34 Score=274.85 Aligned_cols=306 Identities=14% Similarity=0.199 Sum_probs=226.3
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
|..++.|.|+ ...|+.| +.++.+.||+..-.. ........+|.+.|++
T Consensus 10 ~i~~~~~s~~--------~~~l~~~-----~~d~~v~i~~~~~~~-------------------~~~~~~~~~h~~~v~~ 57 (372)
T 1k8k_C 10 PISCHAWNKD--------RTQIAIC-----PNNHEVHIYEKSGNK-------------------WVQVHELKEHNGQVTG 57 (372)
T ss_dssp CCCEEEECTT--------SSEEEEE-----CSSSEEEEEEEETTE-------------------EEEEEEEECCSSCEEE
T ss_pred CeEEEEECCC--------CCEEEEE-----eCCCEEEEEeCCCCc-------------------EEeeeeecCCCCcccE
Confidence 5667888775 1344444 356789999864310 0123344589999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~ 225 (496)
++|+| ++++|++++.||.|++||+.+.. ......+.+|.. .|.+++|+|++++|++|+.||.|++||+
T Consensus 58 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 58 VDWAP-DSNRIVTCGTDRNAYVWTLKGRT----------WKPTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp EEEET-TTTEEEEEETTSCEEEEEEETTE----------EEEEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred EEEeC-CCCEEEEEcCCCeEEEEECCCCe----------eeeeEEeecCCC-ceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 99999 88999999999999999997761 112233456766 6999999999999999999999999999
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (496)
+...... ........|...|.+++|+|++ .+|++++.||.|++
T Consensus 126 ~~~~~~~------------------------------------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~ 168 (372)
T 1k8k_C 126 EQENDWW------------------------------------VCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRI 168 (372)
T ss_dssp ETTTTEE------------------------------------EEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred cCCCcce------------------------------------eeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEE
Confidence 7542100 0012235688999999999998 79999999999999
Q ss_pred EEccCC----------------CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 306 WDARVG----------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 306 wd~~~~----------------~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
||++.. .......+..|...|.+++|+| ++.+|++++.||.|++||+++ +.++..+.
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~ 241 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK------KMAVATLA 241 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG------TTEEEEEE
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC------CceeEEEc
Confidence 997521 1225666678999999999999 899999999999999999998 78899999
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC--CCcccC-CCCCCC----------------CCCCeeE------E
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVE-QGPRTT----------------NYPAGLF------F 424 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~--~~~~~~-~~~~~~----------------~~~~~~~------~ 424 (496)
.|...|.+++|+|++. +|++| .|+.|++|++.. ..-... ...... ....... .
T Consensus 242 ~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (372)
T 1k8k_C 242 SETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA 319 (372)
T ss_dssp CSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred cCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccc
Confidence 9999999999999998 56566 899999999987 210000 000000 0000010 1
Q ss_pred Ee-cCCCCCcceEEecCCCC---cEEEEecCCCCCCCCCCeEEEeecC
Q 010997 425 QH-AGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 425 ~~-~~h~~~V~~~~~~p~~~---~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.+ .+|...|++++|++.+. .+++|++. ||.|+||++.
T Consensus 320 ~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~-------Dg~i~~W~~~ 360 (372)
T 1k8k_C 320 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGM-------DGGMSIWDVR 360 (372)
T ss_dssp CCSSSSSSCEEEEEEEESTTTSCSEEEEEET-------TSEEEEEEHH
T ss_pred cccccccCCcceeEEecCCCcceeeEEEecC-------CCceEEEEec
Confidence 22 48999999999885554 56665555 5999999997
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-34 Score=280.84 Aligned_cols=248 Identities=11% Similarity=0.119 Sum_probs=186.9
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
|..++.|.|+- ..|+ .++.++.+.||+.....+ .......+|.+.|++
T Consensus 13 ~v~~~~~s~~g--------~~l~-----~~~~d~~i~iw~~~~~~~-------------------~~~~~~~~h~~~v~~ 60 (377)
T 3dwl_C 13 PSYEHAFNSQR--------TEFV-----TTTATNQVELYEQDGNGW-------------------KHARTFSDHDKIVTC 60 (377)
T ss_dssp CCSCCEECSSS--------SEEE-----CCCSSSCBCEEEEETTEE-------------------EECCCBCCCSSCEEE
T ss_pred cEEEEEECCCC--------CEEE-----EecCCCEEEEEEccCCce-------------------EEEEEEecCCceEEE
Confidence 56677777741 2332 345678889998753110 011233479999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~ 225 (496)
++|+| ++++||+++.||.|+|||+.+.. ...+...+.+|.. .|.+++|+|++++|++|+.|+.|++||+
T Consensus 61 ~~~s~-~~~~l~s~s~d~~v~vwd~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 129 (377)
T 3dwl_C 61 VDWAP-KSNRIVTCSQDRNAYVYEKRPDG---------TWKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGARVISVCYF 129 (377)
T ss_dssp EEECT-TTCCEEEEETTSSEEEC---------------CCCCEEECCCCSS-CEEEEECCTTSSCCEEEESSSCEEECCC
T ss_pred EEEeC-CCCEEEEEeCCCeEEEEEcCCCC---------ceeeeeEecccCC-ceEEEEECCCCCEEEEEecCCeEEEEEE
Confidence 99999 78899999999999999998872 1235667788887 6999999999999999999999999999
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEEcCCCeEE
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSCLI 304 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 304 (496)
++... ......+.. |...|.+++|+|++ .+|++++.|+.|+
T Consensus 130 ~~~~~-------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 130 EQEND-------------------------------------WWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAY 171 (377)
T ss_dssp ------------------------------------------CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEE
T ss_pred CCccc-------------------------------------ceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEE
Confidence 75421 112245666 99999999999998 7999999999999
Q ss_pred EEEccCCC----------------ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC----
Q 010997 305 LWDARVGT----------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP---- 364 (496)
Q Consensus 305 iwd~~~~~----------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---- 364 (496)
+||++... ......+ .|...|++++|+| ++.+|++|+.||.|++||+++ +..
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~ 243 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSA------PEQPPRA 243 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECS------TTSCEEE
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCC------CCCccee
Confidence 99996322 1133344 8999999999999 899999999999999999998 555
Q ss_pred ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
+..+.+|...|.+++|+|++. +|++++.|+ +.+|+...
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~-~~~~~~~~ 281 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESA-IVAAGYNYS-PILLQGNE 281 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTE-EEEEESSSS-EEEECCCC
T ss_pred eEeecCCCCceEEEEEcCCCC-EEEEEcCCc-EEEEEeCC
Confidence 788899999999999999998 567877555 55787764
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=270.89 Aligned_cols=257 Identities=14% Similarity=0.126 Sum_probs=212.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|.+.|.+++|+| ++++|++++.||.|++||+.++ +....+. |.. .|.+++|+|++++|+++
T Consensus 69 ~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~-~~~-~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 69 TLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNG------------QCVATWK-SPV-PVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEE-CSS-CEEEEEECTTSSEEEEE
T ss_pred hhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEee-cCC-CeEEEEEccCCCEEEEe
Confidence 4457999999999999 8899999999999999999887 4555565 554 68999999999999999
Q ss_pred cCC-----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC--ceeEEEEc
Q 010997 215 GKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTFC 287 (496)
Q Consensus 215 ~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~ 287 (496)
+.+ |.|++||+........... ........+..|.. .+.+++|+
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTK-----------------------------VSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEE-----------------------------ECSSCSEEEECCTTCCCEEEEEEC
T ss_pred cCCccCCCCEEEEEEecCCccceeecc-----------------------------cccceeeeccCCcCccceeEEEEc
Confidence 998 9999999986533211110 11223355666776 99999999
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
|++ .+|++++.||.|++||+++... ....+..|...|.+++|+| ++.+|++++.||.|++||+++ +..+..
T Consensus 185 ~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~------~~~~~~ 255 (369)
T 3zwl_B 185 TKG-KYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST------LQVLKK 255 (369)
T ss_dssp GGG-CEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEEE
T ss_pred CCC-CEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCC------Cceeee
Confidence 998 7899999999999999998432 5666778999999999999 899999999999999999998 677777
Q ss_pred eccCCCCEEEEEEcCCCCCEEEEEeCCC--------------cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 433 (496)
Q Consensus 368 ~~~h~~~i~~l~~sp~~~~llas~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 433 (496)
+. +...+.+++|+|++.+ +++++.++ .+++||+... ..+..+.+|...|
T Consensus 256 ~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------------~~~~~~~~~~~~v 318 (369)
T 3zwl_B 256 YE-TDCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------------EEIGRVQGHFGPL 318 (369)
T ss_dssp EE-CSSCEEEEEECSSSSE-EEEEECCC-------------CEEEEEETTTC---------------CEEEEEECCSSCE
T ss_pred ec-CCCCceeEEecCCCce-EEEeecCCCceEEEEecCCCcceeEEEecCCC---------------cchhheecccCcE
Confidence 76 7889999999999996 55777777 8999998874 5566778999999
Q ss_pred ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
++++|+|++.+++ +|+.||.|+||++..
T Consensus 319 ~~~~~s~~~~~l~--------s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 319 NTVAISPQGTSYA--------SGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEEECTTSSEEE--------EEETTSEEEEEEECH
T ss_pred EEEEECCCCCEEE--------EEcCCCeEEEEECcc
Confidence 9999999887554 444569999999984
No 71
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-36 Score=290.11 Aligned_cols=258 Identities=12% Similarity=0.153 Sum_probs=197.7
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
.|.+.|++++|+| ++++||+|+.||.|+|||+.+.. .+....+.+|.. .|++++|+|++++|++|+.|
T Consensus 9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNG----------WKHARTFSDHDK-IVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTE----------EEECCCBCCCSS-CEEEEEECTTTCCEEEEETT
T ss_pred cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCc----------eEEEEEEecCCc-eEEEEEEeCCCCEEEEEeCC
Confidence 4678999999999 88999999999999999998651 123456778987 69999999999999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|+|++||+.++. ...+...+.+|...|.+++|+|++ .+|+++
T Consensus 77 ~~v~vwd~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 118 (377)
T 3dwl_C 77 RNAYVYEKRPDG-------------------------------------TWKQTLVLLRLNRAATFVRWSPNE-DKFAVG 118 (377)
T ss_dssp SSEEEC-------------------------------------------CCCCEEECCCCSSCEEEEECCTTS-SCCEEE
T ss_pred CeEEEEEcCCCC-------------------------------------ceeeeeEecccCCceEEEEECCCC-CEEEEE
Confidence 999999997643 012235667899999999999998 789999
Q ss_pred cCCCeEEEEEccCCCc-cceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC------------CCCC
Q 010997 298 GDDSCLILWDARVGTS-PVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------------GVGS 363 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~-~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~------------~~~~ 363 (496)
+.|+.|++||++.+.. .....+.. |...|++++|+| ++.+|++|+.||.|++||++..... ..+.
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT 197 (377)
T ss_dssp ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhh
Confidence 9999999999988752 12444555 999999999999 8999999999999999999632100 0134
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~ 443 (496)
++..+ +|...|.+++|+|++.+ |++++.||.|++||+..... +...+..+.+|...|.+++|+|++.
T Consensus 198 ~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~ 264 (377)
T 3dwl_C 198 VCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAYPSAPEQ-----------PPRALITVKLSQLPLRSLLWANESA 264 (377)
T ss_dssp EEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC-CEECSTTS-----------CEEECCCEECSSSCEEEEEEEETTE
T ss_pred hhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEEEECCCCCC-----------cceeeEeecCCCCceEEEEEcCCCC
Confidence 55566 89999999999999995 57999999999999987421 1223556788999999999999876
Q ss_pred cEEEEecCCCCCCCCCCeEEEeecC
Q 010997 444 WTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 444 ~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+ ++++++ |+.+ +|+..
T Consensus 265 ~-l~~~~~-------~~~~-~~~~~ 280 (377)
T 3dwl_C 265 I-VAAGYN-------YSPI-LLQGN 280 (377)
T ss_dssp E-EEEESS-------SSEE-EECCC
T ss_pred E-EEEEcC-------CcEE-EEEeC
Confidence 4 555444 3555 67665
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-34 Score=281.99 Aligned_cols=273 Identities=15% Similarity=0.223 Sum_probs=219.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec-CCCCcceeeeecCCCCce
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~-h~~~~v~~l~~~p~~~~l 211 (496)
.+...+|...+.+..+.+ ++..+++++.||.|++||+.++ +....+.. |.. .|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~-s~~~l~~~~~d~~v~lw~~~~~------------~~~~~~~~~~~~-~v~~v~~s~~~~~l 149 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDW-SNLNVVAVALERNVYVWNADSG------------SVSALAETDEST-YVASVKWSHDGSFL 149 (401)
T ss_dssp EEECTTCCCCTTCBCEEE-CTTSEEEEEETTEEEEEETTTC------------CEEEEEECCTTC-CEEEEEECTTSSEE
T ss_pred eeeCCCCcCCceEEEEee-cCCCEEEEECCCeEEEeeCCCC------------cEeEeeecCCCC-CEEEEEECCCCCEE
Confidence 444557776654443333 2345778889999999999887 44455555 554 79999999999999
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
++|+.||.|++||+.++. .+..+.+|...|.+++|++
T Consensus 150 ~~~~~dg~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~--- 186 (401)
T 4aez_A 150 SVGLGNGLVDIYDVESQT----------------------------------------KLRTMAGHQARVGCLSWNR--- 186 (401)
T ss_dssp EEEETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEEET---
T ss_pred EEECCCCeEEEEECcCCe----------------------------------------EEEEecCCCCceEEEEECC---
Confidence 999999999999987542 2366778999999999943
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
.+|++++.||.|++||++.... ....+..|...|.+++|+| ++.+|++|+.||.|++||+++ +.++..+..|
T Consensus 187 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~ 258 (401)
T 4aez_A 187 HVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS------SIPKFTKTNH 258 (401)
T ss_dssp TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC------SSEEEEECCC
T ss_pred CEEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC------CCccEEecCC
Confidence 6899999999999999985542 4566778999999999999 999999999999999999998 7888899999
Q ss_pred CCCEEEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 372 SAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
...|.+++|+|++..++++++ .|+.|++||+... ..+..+ .|...|.+++|+|++..++++
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---------------~~~~~~-~~~~~v~~~~~s~~~~~l~~~- 321 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---------------ARVNTV-DAGSQVTSLIWSPHSKEIMST- 321 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---------------CEEEEE-ECSSCEEEEEECSSSSEEEEE-
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---------------CEEEEE-eCCCcEEEEEECCCCCeEEEE-
Confidence 999999999999988988876 7999999999874 233333 356789999999999887754
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+|+.||.|+||++... .......+.+|.+.|.+++|+|
T Consensus 322 -----~g~~dg~i~v~~~~~~----~~~~~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 322 -----HGFPDNNLSIWSYSSS----GLTKQVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp -----ECTTTCEEEEEEEETT----EEEEEEEEECCSSCCCEEEECT
T ss_pred -----eecCCCcEEEEecCCc----cceeEEEecCCCCCEEEEEECC
Confidence 2445799999999832 1223344678999999999997
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.1e-35 Score=277.75 Aligned_cols=268 Identities=11% Similarity=0.170 Sum_probs=215.0
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK 216 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~ 216 (496)
+|.+.|++++|+| ++.+||+++.||.|+|||+...... .+...+.+|.. .|.+++|+|+++ +|++|+.
T Consensus 9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQSLRYKH-PLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEEEEEEECSS-CEEEEEEEESSSEEEEEEET
T ss_pred CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc---------ccceeeeecCC-ceEEEEECCCCCcEEEEEcC
Confidence 7999999999999 8889999999999999999876211 12345567877 799999999999 9999999
Q ss_pred CCcEEEEec-CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec--CCCceeEEEEccCCCce
Q 010997 217 DKSVVLWSI-QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 217 Dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~ 293 (496)
||.|++||+ .++.. ..+.+ |...|.+++|+| + .+
T Consensus 78 dg~i~~wd~~~~~~~-----------------------------------------~~~~~~~~~~~v~~l~~~~-~-~~ 114 (342)
T 1yfq_A 78 QGEILKVDLIGSPSF-----------------------------------------QALTNNEANLGICRICKYG-D-DK 114 (342)
T ss_dssp TSCEEEECSSSSSSE-----------------------------------------EECBSCCCCSCEEEEEEET-T-TE
T ss_pred CCeEEEEEeccCCce-----------------------------------------EeccccCCCCceEEEEeCC-C-CE
Confidence 999999999 65321 45667 999999999999 6 79
Q ss_pred EEEEcCCCeEEEEEccC---------CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC-CCCCCCCC
Q 010997 294 FCSVGDDSCLILWDARV---------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-LTSNGVGS 363 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~ 363 (496)
|++++.|+.|++||+++ .+ ....+ .|...|.+++|+| ++ +++++.|+.|++||++. .. ..
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~-~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~----~~ 184 (342)
T 1yfq_A 115 LIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNT-KVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCED----DN 184 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEES--CSSSS-SSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTT----CC
T ss_pred EEEEcCCCeEEEEcccccccccccccCC--eeeEE-eeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcccc----cc
Confidence 99999999999999987 54 33344 3889999999998 55 99999999999999987 43 22
Q ss_pred CceEeccCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC---------CCc
Q 010997 364 PINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKV 433 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V 433 (496)
.......|...|.+++|+| ++. +|++++.||.|++|++...+... .......+.+|. ..|
T Consensus 185 ~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i 254 (342)
T 1yfq_A 185 GTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDY---------NSSKRFAFRCHRLNLKDTNLAYPV 254 (342)
T ss_dssp CEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCST---------TCTTCEEEECCCCCTTCCSSCCCE
T ss_pred ceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCccc---------ccccceeeecccccccccccceeE
Confidence 3445567889999999999 888 56799999999999998741100 012233345554 499
Q ss_pred ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc-cceEEEec
Q 010997 434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCT 493 (496)
Q Consensus 434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h-~~~v~~~~ 493 (496)
.+++|+|++.+++ +|+.||.|++||+. .++.+..+.+| .++|.+++
T Consensus 255 ~~~~~s~~~~~l~--------~~~~dg~i~vwd~~------~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 255 NSIEFSPRHKFLY--------TAGSDGIISCWNLQ------TRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp EEEEECTTTCCEE--------EEETTSCEEEEETT------TTEEEEECCCCSSSEEEEEE
T ss_pred EEEEEcCCCCEEE--------EecCCceEEEEcCc------cHhHhhhhhcccCCCceEec
Confidence 9999999888765 44456999999998 57777888898 99999886
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-33 Score=275.01 Aligned_cols=245 Identities=15% Similarity=0.175 Sum_probs=195.3
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--CcceeeeecCCCCceEE
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLS 213 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--~~v~~l~~~p~~~~l~s 213 (496)
..+|.+.|.+++|+|.++.+|++++.||.|++||+... ....+..|.. ..|.+++|+|++++|++
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 180 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-------------VIQVFAKTDSWDYWYCCVDVSVSRQMLAT 180 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-------------EEEEEECCCCSSCCEEEEEEETTTTEEEE
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-------------ceEEEeccCCCCCCeEEEEECCCCCEEEE
Confidence 34799999999999977889999999999999999853 2234444431 36899999999999999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.||.|++||++. .++..+.+|...|.+++|+|++..+
T Consensus 181 ~~~d~~i~i~d~~~-----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 181 GDSTGRLLLLGLDG-----------------------------------------HEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EETTSEEEEEETTS-----------------------------------------CEEEEEECSSSCEEEEEECSSCTTE
T ss_pred ECCCCCEEEEECCC-----------------------------------------CEEEEeccCCCcEEEEEECCCCCCE
Confidence 99999999999842 1236678899999999999999559
Q ss_pred EEEEcCCCeEEEEEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 294 FCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
|++++.|+.|++||+++... .....+ .|...|.+++|+|.++.+|++++.||.|++||+++ +..+..+.+|
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~ 292 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD------WSKPDQIIIH 292 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB------TTSCSEEEEC
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC------Cccccccccc
Confidence 99999999999999998431 134444 79999999999996789999999999999999998 4555555544
Q ss_pred C-----------------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC--CCCC
Q 010997 372 S-----------------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDK 432 (496)
Q Consensus 372 ~-----------------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~ 432 (496)
. ..+..++|+|++.+ +++.|+.|+|||+... .++..+.+ |...
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~---------------~~~~~l~~~~~~~~ 354 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSG---------------GLVHQLRDPNAAGI 354 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTC---------------CEEEEECBTTBCSC
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCC---------------ceeeeecCCCCCce
Confidence 2 34555777777764 7778999999999874 34555655 4567
Q ss_pred cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 433 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 433 V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+..++|+|++.+++ +++ ||.|+||++.
T Consensus 355 ~~~~~~s~~g~~l~-s~s--------d~~i~iw~~~ 381 (383)
T 3ei3_B 355 ISLNKFSPTGDVLA-SGM--------GFNILIWNRE 381 (383)
T ss_dssp CCEEEECTTSSEEE-EEE--------TTEEEEEECC
T ss_pred EEEEEEecCccEEE-Eec--------CCcEEEEecC
Confidence 77789999887654 333 5999999997
No 75
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-34 Score=284.43 Aligned_cols=267 Identities=14% Similarity=0.174 Sum_probs=206.6
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i 222 (496)
+....|+| ++++||+|+.||.|+|||+.+. +....+.+|.. .|++++|+|++++|++|+.||+|++
T Consensus 100 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i~i 165 (420)
T 3vl1_A 100 TAVDTAKL-QMRRFILGTTEGDIKVLDSNFN------------LQREIDQAHVS-EITKLKFFPSGEALISSSQDMQLKI 165 (420)
T ss_dssp EEEEEECS-SSCEEEEEETTSCEEEECTTSC------------EEEEETTSSSS-CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eEEEEEec-CCCEEEEEECCCCEEEEeCCCc------------ceeeecccccC-ccEEEEECCCCCEEEEEeCCCeEEE
Confidence 44445666 8899999999999999999876 44556678887 7999999999999999999999999
Q ss_pred EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe
Q 010997 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 302 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (496)
||+.++. .+..+.+|...|.+++|+|++ .+|++++.||.
T Consensus 166 wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~ 204 (420)
T 3vl1_A 166 WSVKDGS----------------------------------------NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGT 204 (420)
T ss_dssp EETTTCC----------------------------------------CCEEEECCSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred EeCCCCc----------------------------------------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCc
Confidence 9997542 236678899999999999998 78999999999
Q ss_pred EEEEEccCCCccceeeecc---CC---------------------CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 303 LILWDARVGTSPVIKVEKA---HD---------------------ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~---~~---------------------~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
|++||+++++ ....+.. +. ..+.+++|+| ++.+|++|+.||.|++||+++
T Consensus 205 v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~--- 278 (420)
T 3vl1_A 205 IRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFS--- 278 (420)
T ss_dssp EEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTT---
T ss_pred EEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCC---
Confidence 9999999876 3444432 33 4455556678 899999999999999999998
Q ss_pred CCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceE
Q 010997 359 NGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDF 436 (496)
Q Consensus 359 ~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~ 436 (496)
+..+..+ ..|...|.+++|+|++..+|++|+.||.|++||++.... ++..+.+ |...|..+
T Consensus 279 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 279 ---KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--------------PVGEFLINEGTPINNV 341 (420)
T ss_dssp ---CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------CSEEEEESTTSCEEEE
T ss_pred ---CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------------chhhhhccCCCCceEE
Confidence 5656555 458899999999999986678999999999999987421 1223333 67788888
Q ss_pred EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC---chHHHHHHHhccceEEEeccCC
Q 010997 437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP---QDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~---~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.|. ++. ++++ ++.||.|++|++....... .......+.+|.+.|.+++|+|
T Consensus 342 ~~~-~~~-~l~s-------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (420)
T 3vl1_A 342 YFA-AGA-LFVS-------SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS 395 (420)
T ss_dssp EEE-TTE-EEEE-------ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred EeC-CCC-EEEE-------ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence 665 455 5554 4455999999998521110 0111223557888899999987
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=285.78 Aligned_cols=272 Identities=12% Similarity=0.198 Sum_probs=197.3
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+|.+.|++++|+|.++.+||+|+.||.|+|||+.+..... ..+....+ +|.. .|++++|+|++++|++|+.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~~~-~h~~-~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSLTY-DCSS-TVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSEEE-ECSS-CEEEEEECTTSSEEEEEET
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc------ccceeeec-cCCC-CEEEEEEeCCCCEEEEEeC
Confidence 47899999999999677899999999999999987621000 01223333 4776 7999999999999999999
Q ss_pred CCcEEEEecCC---ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--c--CCCceeEEE--Ec
Q 010997 217 DKSVVLWSIQD---HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--G--HEDTVEDVT--FC 287 (496)
Q Consensus 217 Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--h~~~v~~l~--~~ 287 (496)
||+|++||++. +....... ...+..+. . +...+.++. ++
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~--------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLN--------------------------------CECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEE--------------------------------EEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred CCEEEEEEeccccCCceeeccc--------------------------------cceeEEEEccCcccccCceEEEEEEc
Confidence 99999999952 21110000 00111111 2 556677777 55
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeecc--CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 365 (496)
+++ .+|++++.|+.|++||+++++ ....+.. |...|++++|+| ++.+|++|+.||.|++||+++ +.++
T Consensus 180 ~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~------~~~~ 249 (437)
T 3gre_A 180 EEK-SLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF------NVLI 249 (437)
T ss_dssp SSC-EEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEE
T ss_pred CCC-CEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC------ccEE
Confidence 777 799999999999999999987 5566656 889999999999 899999999999999999998 7788
Q ss_pred eEec-cCCCCEEEEEEcC----CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE----------EecC--
Q 010997 366 NKFE-GHSAAVLCVQWSP----DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF----------QHAG-- 428 (496)
Q Consensus 366 ~~~~-~h~~~i~~l~~sp----~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-- 428 (496)
..+. .|...|.+++|+| ++. +|++|+.||.|++||+.............. .+....+ .+.+
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 327 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDE-QPSMEHFLPIEKGLEELNFCGIR 327 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSS-CCCGGGGSCBCSSGGGCCCCCCC
T ss_pred EEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCC-CCccceecccccccccceecccc
Confidence 8876 7888999997765 455 678999999999999987422111100000 0000000 1233
Q ss_pred CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|...|++++|+ ++. ++++++. ||.|++||+..
T Consensus 328 ~~~~v~~l~~~-~~~-~l~s~~~-------d~~i~~wd~~~ 359 (437)
T 3gre_A 328 SLNALSTISVS-NDK-ILLTDEA-------TSSIVMFSLNE 359 (437)
T ss_dssp SGGGGCCEEEE-TTE-EEEEEGG-------GTEEEEEETTC
T ss_pred cCCceEEEEEC-Cce-EEEecCC-------CCeEEEEECCC
Confidence 77789999999 454 5555544 59999999984
No 77
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=271.24 Aligned_cols=277 Identities=17% Similarity=0.229 Sum_probs=208.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCce-----EEecCCCCcceeeeecC-CC
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-----ILTGHQDNAEFALAMCP-TE 208 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~l~~h~~~~v~~l~~~p-~~ 208 (496)
...+|.+.|++++|+|.++++||+|+.||.|+|||+.+......... .... ...+|.. .|.+++|+| ++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 112 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC----KAVCSIGRDHPDVHRY-SVETVQWYPHDT 112 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE----CEEEEECTTCTTCCSS-CEEEEEECTTCT
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec----cccccccccccccCCC-cEEEEEEccCCC
Confidence 34579999999999997788999999999999999998732211000 0000 0124776 799999999 67
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
.+|++|+.||.|++||+.++.. ...+ .+...+.++.|+|
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~~ 151 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQT----------------------------------------ADVF-NFEETVYSHHMSP 151 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEE----------------------------------------EEEE-ECSSCEEEEEECS
T ss_pred cEEEEEeCCCeEEEeeCCCCcc----------------------------------------ceec-cCCCceeeeEeec
Confidence 7999999999999999976432 1222 3677899999998
Q ss_pred CCC--ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCC------
Q 010997 289 SSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSN------ 359 (496)
Q Consensus 289 ~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~------ 359 (496)
.+. .++++++.||.|++||++++. ....+..|...|.+++|+| ++. +|++|+.||.|++||++.....
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~ 228 (408)
T 4a11_B 152 VSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQ 228 (408)
T ss_dssp SCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCT
T ss_pred CCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccc
Confidence 652 489999999999999999887 5667778999999999999 665 7999999999999999874210
Q ss_pred ----CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC--------------------
Q 010997 360 ----GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-------------------- 415 (496)
Q Consensus 360 ----~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~-------------------- 415 (496)
........+..|...|.+++|+|++.+ |++++.||.|++||+.............
T Consensus 229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp TTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred cccccceeeccccccccCceeEEEEcCCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 001112223678999999999999985 6799999999999998753322111000
Q ss_pred ------------CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 416 ------------TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 416 ------------~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+......+..+.+|...|++++|+|++.+++ +|+.||.|++|++..
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY--------SGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE--------EEETTSCEEEEEECC
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE--------EECCCCeEEEEeCCC
Confidence 0012245667789999999999999887654 444569999999984
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.8e-34 Score=284.29 Aligned_cols=284 Identities=19% Similarity=0.312 Sum_probs=222.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec--CCCCceE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--PTEPYVL 212 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~--p~~~~l~ 212 (496)
...+|.+.|.+++|+| ++ +|++|+.||+|++||+.++ +....+.+|.. .|.+++|+ +++++|+
T Consensus 157 ~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 157 QLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKG------------CCTHVFEGHNS-TVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp EECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEEESSSCEEEE
T ss_pred EEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCC------------cEEEEECCCCC-ccEEEEEecCCCCCEEE
Confidence 4458999999999998 55 8999999999999999887 56678889987 79999998 4678999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.||+|++||+.+.......... ........ ...........+.+|...|.++. +++ .
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~--~~~-~ 281 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEE------HDYPLVFH-----------TPEENPYFVGVLRGHMASVRTVS--GHG-N 281 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------------CCSSEEES-----------CGGGCTTEEEEECCCSSCEEEEE--EET-T
T ss_pred EEcCCCcEEEeeCCCCccccccccc------CCcceEee-----------ccCCCeEEEEEccCccceEEEEc--CCC-C
Confidence 9999999999999865432211110 00000000 00011123456788999998874 555 7
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
++++++.||.|++||+++++ ....+.+|...|.+++|+| ++.+|++|+.||.|++||+++ +.++..+.+|.
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~ 352 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYTLQGHT 352 (464)
T ss_dssp EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECCCS
T ss_pred EEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CcEEEEEeCCC
Confidence 89999999999999999877 6677788999999999999 899999999999999999998 78999999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
..|.+++|++ . .|++++.||.|++||+... ..... ..|...+..++|++++.. +++++
T Consensus 353 ~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~---------------~~~~~-~~~~~~~~~~~~~~~~~~-l~~~~-- 410 (464)
T 3v7d_B 353 ALVGLLRLSD--K-FLVSAAADGSIRGWDANDY---------------SRKFS-YHHTNLSAITTFYVSDNI-LVSGS-- 410 (464)
T ss_dssp SCEEEEEECS--S-EEEEEETTSEEEEEETTTC---------------CEEEE-EECTTCCCEEEEEECSSE-EEEEE--
T ss_pred CcEEEEEEcC--C-EEEEEeCCCcEEEEECCCC---------------ceeee-ecCCCCccEEEEEeCCCE-EEEec--
Confidence 9999999984 3 5789999999999999874 12222 235667888999998765 44333
Q ss_pred CCCCCCCCeEEEeecCCCCcCCchHHHHH-HHhccceEEEeccCC
Q 010997 453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAE-LEKFKAHVISCTSKP 496 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~sP 496 (496)
||.|+|||+. +++.+.+ +..|...|.+++|++
T Consensus 411 ------dg~i~iwd~~------~g~~~~~~~~~~~~~v~~v~~~~ 443 (464)
T 3v7d_B 411 ------ENQFNIYNLR------SGKLVHANILKDADQIWSVNFKG 443 (464)
T ss_dssp ------TTEEEEEETT------TCCEEESCTTTTCSEEEEEEEET
T ss_pred ------CCeEEEEECC------CCcEEehhhccCCCcEEEEEecC
Confidence 4999999998 5666654 677899999999863
No 79
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.9e-35 Score=285.84 Aligned_cols=262 Identities=11% Similarity=0.129 Sum_probs=208.8
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~ 221 (496)
.+++++|+| ++++|++++.||.|++||+.+. +....+..| . .+....|+|++++|++|+.||.|+
T Consensus 58 ~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~------------~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 58 AGKGNTFEK-VGSHLYKARLDGHDFLFNTIIR------------DGSKMLKRA-D-YTAVDTAKLQMRRFILGTTEGDIK 122 (420)
T ss_dssp CCTTCEEEE-EETTEEEEEETTEEEEEECCSE------------ETTTTSCSC-C-EEEEEEECSSSCEEEEEETTSCEE
T ss_pred cccceeeee-cCCeEEEEEcCCcEEEEEeccc------------ceeeEEecC-C-ceEEEEEecCCCEEEEEECCCCEE
Confidence 466899999 8889999999999999999876 222334455 2 455668899999999999999999
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
+||+.++.. ...+.+|...|.+++|+|++ .+|++++.|+
T Consensus 123 iwd~~~~~~----------------------------------------~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~ 161 (420)
T 3vl1_A 123 VLDSNFNLQ----------------------------------------REIDQAHVSEITKLKFFPSG-EALISSSQDM 161 (420)
T ss_dssp EECTTSCEE----------------------------------------EEETTSSSSCEEEEEECTTS-SEEEEEETTS
T ss_pred EEeCCCcce----------------------------------------eeecccccCccEEEEECCCC-CEEEEEeCCC
Confidence 999875432 24556899999999999998 7999999999
Q ss_pred eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---CCCCEEEE
Q 010997 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCV 378 (496)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---h~~~i~~l 378 (496)
.|++||+++++ ....+.+|...|.+++|+| ++.+|++|+.||.|++||+++ +..+..+.. |...|.++
T Consensus 162 ~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~~v~~~ 232 (420)
T 3vl1_A 162 QLKIWSVKDGS--NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGT------GTTIHTFNRKENPHDGVNSI 232 (420)
T ss_dssp EEEEEETTTCC--CCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECBTTBTTCCEEEE
T ss_pred eEEEEeCCCCc--CceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCC------CceeEEeecCCCCCCCccEE
Confidence 99999999887 5666778999999999999 899999999999999999998 677777764 34445554
Q ss_pred ---------------------EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997 379 ---------------------QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 437 (496)
Q Consensus 379 ---------------------~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 437 (496)
+|+|++. +|++|+.||.|++||++... .......+|...|.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 233 ALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKE--------------QTIQLPSKFTCSCNSLT 297 (420)
T ss_dssp EEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCC--------------EEEEECCTTSSCEEEEE
T ss_pred EEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCc--------------eeEEcccccCCCceeEE
Confidence 4577887 46799999999999998741 23333456889999999
Q ss_pred ecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh-ccceEEEeccC
Q 010997 438 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSK 495 (496)
Q Consensus 438 ~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~s 495 (496)
|+|++..++++++. ||.|++||+... ..++..+.+ |...|.++.|+
T Consensus 298 ~~~~~~~~l~~g~~-------dg~i~vwd~~~~-----~~~~~~~~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 298 VDGNNANYIYAGYE-------NGMLAQWDLRSP-----ECPVGEFLINEGTPINNVYFA 344 (420)
T ss_dssp ECSSCTTEEEEEET-------TSEEEEEETTCT-----TSCSEEEEESTTSCEEEEEEE
T ss_pred EeCCCCCEEEEEeC-------CCeEEEEEcCCC-----cCchhhhhccCCCCceEEEeC
Confidence 99999866765555 599999999831 233556666 56678877664
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3e-33 Score=275.37 Aligned_cols=264 Identities=20% Similarity=0.323 Sum_probs=218.4
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE--ecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l--~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
.++.|+|++ + ++||+|. |++|+|||..++ +....+ .+|.. .|++|+|+|+|++|++|+.||+
T Consensus 107 y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg------------~~~~~~~~~~~~~-~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 107 YLNLVDWSS-G-NVLAVAL-DNSVYLWSASSG------------DILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp TCBCEEECT-T-SEEEEEE-TTEEEEEETTTC------------CEEEEEECCSTTC-CEEEEEECTTSSEEEEEETTSC
T ss_pred cceeEEECC-C-CEEEEEe-CCEEEEEECCCC------------CEEEEEEecCCCC-cEEEEEECCCCCEEEEEECCCe
Confidence 468899998 4 4888876 899999999988 444444 45655 6999999999999999999999
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
|+|||++++.. +..+.+|...+.++.+++ .++++|+.
T Consensus 171 v~iWd~~~~~~----------------------------------------~~~~~~h~~~v~~~s~~~---~~l~sgs~ 207 (420)
T 4gga_A 171 VQLWDVQQQKR----------------------------------------LRNMTSHSARVGSLSWNS---YILSSGSR 207 (420)
T ss_dssp EEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEEET---TEEEEEET
T ss_pred EEEEEcCCCcE----------------------------------------EEEEeCCCCceEEEeeCC---CEEEEEeC
Confidence 99999975432 367788999999998863 68999999
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEE
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~ 379 (496)
|+.+++||.+.... ....+.+|...+..+.|+| ++.++++++.|+.|++||....... ...+.....|...|.+++
T Consensus 208 d~~i~~~d~~~~~~-~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~ 283 (420)
T 4gga_A 208 SGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVA 283 (420)
T ss_dssp TSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEE
T ss_pred CCceeEeeecccce-eeEEecccccceeeeeecC-CCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeee
Confidence 99999999987663 4566779999999999999 9999999999999999999873311 235677888999999999
Q ss_pred EcCCCCCEEEEE--eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 380 WSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 380 ~sp~~~~llas~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
|+|.+..+++++ +.|+.|+|||+.+. .++.....| ..|.++.|+|++..++++ +|+
T Consensus 284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~---------------~~~~~~~~~-~~v~~~~~~~~~~~lv~~------sg~ 341 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSDRHIRIWNVCSG---------------ACLSAVDAH-SQVCSILWSPHYKELISG------HGF 341 (420)
T ss_dssp ECTTCTTEEEEEECTTTCEEEEEETTTT---------------EEEEEEECS-SCEEEEEEETTTTEEEEE------ECT
T ss_pred eCCCcccEEEEEeecCCCEEEEEeCCcc---------------ccceeeccc-cceeeeeecCCCCeEEEE------Eec
Confidence 999998888764 47999999999885 344444444 568899999998887754 344
Q ss_pred CCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 458 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 458 ~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.||.|+|||+. +++++.++.+|.++|++++|+|
T Consensus 342 ~d~~I~iwd~~------~~~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 342 AQNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp TTCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence 57999999998 6788889999999999999998
No 81
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.5e-32 Score=256.97 Aligned_cols=251 Identities=18% Similarity=0.342 Sum_probs=204.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.++..+|...|++++|+| ++++||+|+.||+|+|||+.++ +....+.+|.. .+.+ +++++..|+
T Consensus 60 ~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~------------~~~~~~~~h~~-~~~~--~~~~~~~l~ 123 (318)
T 4ggc_A 60 LLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGS--LSWNSYILS 123 (318)
T ss_dssp EEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEE--EEEETTEEE
T ss_pred EEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCc------------eeEEEecCccc-eEEE--eecCCCEEE
Confidence 344457899999999999 8899999999999999999988 66778899987 4444 455678999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+|+.++.+++|+..... ..+..+.+|...+..+.+++++ .
T Consensus 124 s~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~ 163 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAE---------------------------------------HHVATLSGHSQEVCGLRWAPDG-R 163 (318)
T ss_dssp EEETTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-S
T ss_pred EEecCCceEeeecCCCc---------------------------------------eeEEEEcCccCceEEEEEcCCC-C
Confidence 99999999999986432 2236678899999999999998 7
Q ss_pred eEEEEcCCCeEEEEEccCCCcc--ceeeeccCCCCeEEEEecCCCCcEE--EEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997 293 EFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLI--LTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~sp~~~~~l--~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
+|++++.|+.|++||+++++.. .......+...|.+++++|.+..++ ++++.++.|++||.+. ... ...
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~------~~~-~~~ 236 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GAC-LSA 236 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT------CCE-EEE
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc------ccc-ccc
Confidence 8999999999999999886521 2344557888999999999555554 4677889999999987 343 344
Q ss_pred ccCCCCEEEEEEcCCCCCEEEE-EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
..+...+..+.|+|++..++++ |+.|+.|+|||+.+. .++..+.+|.+.|++++|+|++.+++
T Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---------------~~~~~l~gH~~~V~~l~~spdg~~l~- 300 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVA- 300 (318)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEE-
T ss_pred ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE-
Confidence 5578889999999999876543 347999999999875 56778899999999999999888755
Q ss_pred EecCCCCCCCCCCeEEEeecCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
|||.||+|+|||+.+
T Consensus 301 -------S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 301 -------SAAADETLRLWRCFE 315 (318)
T ss_dssp -------EEETTTEEEEECCSC
T ss_pred -------EEecCCeEEEEECCC
Confidence 555569999999974
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-33 Score=315.16 Aligned_cols=327 Identities=19% Similarity=0.285 Sum_probs=251.5
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
......+|.+.|++++|+| ++++||+|+.||.|+|||+.++ +....+.+|.. .|.+++|+|++++|
T Consensus 607 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETG------------EKLLDIKAHED-EVLCCAFSSDDSYI 672 (1249)
T ss_dssp CSEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSEE
T ss_pred ceEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CEEEEeccCCC-CEEEEEEecCCCEE
Confidence 3456678999999999999 8899999999999999999988 66778889988 79999999999999
Q ss_pred EEecCCCcEEEEecCCccccccCCcccc----ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATA----KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
++|+.||+|++||+.++........... .................++.+.+|+.........+.+|...|++++|+
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence 9999999999999988754332211100 000000010111112346778889999999999999999999999999
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccc----------------------------------------------------
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPV---------------------------------------------------- 315 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------------------------------------- 315 (496)
|++ .+|++++.||.|++||++++....
T Consensus 753 p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 753 PDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831 (1249)
T ss_dssp SST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred cCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence 998 799999999999999997653100
Q ss_pred -eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997 316 -IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (496)
Q Consensus 316 -~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d 394 (496)
.....+|...|.+++|+| ++.++++|+.||.|++||+.+ +..+..+.+|...|.+++|+|++.. |++++.|
T Consensus 832 ~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s~d 903 (1249)
T 3sfz_A 832 LAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDS------RLKVADCRGHLSWVHGVMFSPDGSS-FLTASDD 903 (1249)
T ss_dssp EEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSE-EEEEETT
T ss_pred eeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCC------CceeeecCCCccceEEEEECCCCCE-EEEEeCC
Confidence 011126788999999999 999999999999999999998 7888999999999999999999985 6799999
Q ss_pred CcEEEEECCCCCcccC---------------------------------------------------CCC-------CC-
Q 010997 395 GLLNIWDYEKVGKKVE---------------------------------------------------QGP-------RT- 415 (496)
Q Consensus 395 g~i~iwd~~~~~~~~~---------------------------------------------------~~~-------~~- 415 (496)
|.|++||+........ ... ..
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 9999999753100000 000 00
Q ss_pred -----CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEE
Q 010997 416 -----TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI 490 (496)
Q Consensus 416 -----~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~ 490 (496)
+......+....+|...|++++|+|++.+++ +++.||.|++|++.. ++.+ .+.+|...|.
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--------s~~~dg~i~vwd~~~------~~~~-~~~~~~~~v~ 1048 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI--------SSSEDSVIQVWNWQT------GDYV-FLQAHQETVK 1048 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE--------EECSSSBEEEEETTT------TEEE-CCBCCSSCEE
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE--------EEcCCCEEEEEECCC------CceE-EEecCCCcEE
Confidence 0011234455678999999999999988766 555669999999983 3333 3567899999
Q ss_pred EeccCC
Q 010997 491 SCTSKP 496 (496)
Q Consensus 491 ~~~~sP 496 (496)
+++|+|
T Consensus 1049 ~~~~~~ 1054 (1249)
T 3sfz_A 1049 DFRLLQ 1054 (1249)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999886
No 83
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-34 Score=300.74 Aligned_cols=262 Identities=19% Similarity=0.289 Sum_probs=213.7
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEE
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLS 213 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~s 213 (496)
..+|.+.|++++|+| ++++||+|+.||.|+|||+... .......+.+|.+ .|++++|+|+ +++|++
T Consensus 5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCTTSCSEEEE
T ss_pred cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCC----------CCccceeccCCcC-ceEEEEecCCCCCCEEEE
Confidence 458999999999999 8889999999999999999743 1245667889987 7999999988 899999
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--CC
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SA 291 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~ 291 (496)
|+.||+|++||+.++.. .....+.+|...|.+++|+|+ +
T Consensus 73 ~s~Dg~I~vwd~~~~~~--------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~- 113 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG- 113 (753)
T ss_dssp EETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC-
T ss_pred EeCCCeEEEEECCCCcc--------------------------------------cccccccCCCCCeEEEEECCCCCC-
Confidence 99999999999875421 123567789999999999998 6
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC------------CCcEEEEEcCCCcEEEEeCCCCCCC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 359 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~------------~~~~l~sgs~dg~i~iwd~~~~~~~ 359 (496)
.++++|+.||.|++||++............|...|.+++|+|. ++.+|++|+.||.|++||++....
T Consensus 114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~- 192 (753)
T 3jro_A 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ- 192 (753)
T ss_dssp SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-
T ss_pred CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-
Confidence 7999999999999999998854455566789999999999994 488999999999999999987321
Q ss_pred CCCCCceEeccCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997 360 GVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 436 (496)
Q Consensus 360 ~~~~~~~~~~~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 436 (496)
...+...+.+|...|++++|+|+ +. +|++++.||.|++||+....... ...+....+|...|+++
T Consensus 193 -~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~----------~~~~~~~~~~~~~v~~l 260 (753)
T 3jro_A 193 -TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPW----------KKTLLKEEKFPDVLWRA 260 (753)
T ss_dssp -EEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCC----------BCCBSSSSCCSSCCCCE
T ss_pred -cceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcc----------eeEEeccCCCCCceEEE
Confidence 01456778899999999999999 66 67899999999999998742111 11223345688899999
Q ss_pred EecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+|+|++.+++ +|+.||.|+||++..
T Consensus 261 ~~spdg~~l~--------s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 261 SWSLSGNVLA--------LSGGDNKVTLWKENL 285 (753)
T ss_dssp EECTTTCCEE--------EECSSSCEECCBCCS
T ss_pred EEcCCCCEEE--------EEcCCCEEEEEecCC
Confidence 9999988766 555679999999973
No 84
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=272.18 Aligned_cols=275 Identities=16% Similarity=0.234 Sum_probs=214.3
Q ss_pred ceEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997 132 KKHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~ 209 (496)
......+|.+.|++++|+|+. +++||+|+.||.|+|||+.+.. ......+.+|.. .|++++|+|+++
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~~~~~~ 99 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------QTIPKAQQMHTG-PVLDVCWSDDGS 99 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------CEEEEEEEECSS-CEEEEEECTTSS
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC----------ceeEEEeccccC-CEEEEEECcCCC
Confidence 334456899999999999944 7999999999999999998731 122367888987 799999999999
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE--c
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF--C 287 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~ 287 (496)
+|++|+.||.|++||++++.. ..+..|...|.+++| +
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~ 138 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQA-----------------------------------------IQIAQHDAPVKTIHWIKA 138 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEE-----------------------------------------EEEEECSSCEEEEEEEEC
T ss_pred EEEEEcCCCcEEEEEcCCCCc-----------------------------------------eeeccccCceEEEEEEeC
Confidence 999999999999999975432 335679999999999 7
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
|++ .+|++++.||.|++||+++++ ....+..+ ..+.++.+.+ ..+++++.++.+.+||++... .....
T Consensus 139 ~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~-----~~~~~ 206 (368)
T 3mmy_A 139 PNY-SCVMTGSWDKTLKFWDTRSSN--PMMVLQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQP-----SEFRR 206 (368)
T ss_dssp SSC-EEEEEEETTSEEEEECSSCSS--CSEEEECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSC-----EEEEE
T ss_pred CCC-CEEEEccCCCcEEEEECCCCc--EEEEEecC-CCceEEEecC---CeeEEEeCCCcEEEEEecccc-----chhhh
Confidence 887 789999999999999999887 44555444 4677777764 578888899999999998732 11222
Q ss_pred e-ccCCCCEEEEEEcCCCCC---EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC------------
Q 010997 368 F-EGHSAAVLCVQWSPDKSS---VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD------------ 431 (496)
Q Consensus 368 ~-~~h~~~i~~l~~sp~~~~---llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------ 431 (496)
+ ..+...+.++++.++... .+++++.||.|++||+..... ...+..+.+|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 274 (368)
T 3mmy_A 207 IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP------------AKDNFTFKCHRSNGTNTSAPQDIY 274 (368)
T ss_dssp CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH------------HHHSEEEECSEEC----CCCEEEC
T ss_pred ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc------------cccceeeeeeeccccccccccccc
Confidence 2 234456677777665543 267999999999999987421 123444555554
Q ss_pred CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.|++++|+|++.+++ +|+.||.|+|||+. .++++.++.+|..+|.+++|+|
T Consensus 275 ~v~~~~~sp~~~~l~--------s~~~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 275 AVNGIAFHPVHGTLA--------TVGSDGRFSFWDKD------ARTKLKTSEQLDQPISACCFNH 325 (368)
T ss_dssp CEEEEEECTTTCCEE--------EEETTSCEEEEETT------TTEEEEECCCCSSCEEEEEECT
T ss_pred ceEEEEEecCCCEEE--------EEccCCeEEEEECC------CCcEEEEecCCCCCceEEEECC
Confidence 799999999887765 45556999999999 6777888899999999999998
No 85
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-33 Score=296.78 Aligned_cols=329 Identities=13% Similarity=0.081 Sum_probs=217.8
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
....|.+.|++++|+| +++||+++.|++|+|||+.++ +....+. |.. .|++++|+|++++|++|
T Consensus 53 ~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~------------~~~~~~~-~~~-~V~~v~~sp~g~~l~sg 116 (902)
T 2oaj_A 53 IKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQ------------KVLTTVF-VPG-KITSIDTDASLDWMLIG 116 (902)
T ss_dssp EECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTC------------SEEEEEE-CSS-CEEEEECCTTCSEEEEE
T ss_pred EEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCC------------cEEEEEc-CCC-CEEEEEECCCCCEEEEE
Confidence 4456889999999999 459999999999999999887 4555665 444 69999999999999999
Q ss_pred cCCCcEEEEecCCccccccCC-c-----cccccCCCCCceecc--------CCCCCCCCCCCCCCCCcCCeeeeecC---
Q 010997 215 GKDKSVVLWSIQDHITSSATD-P-----ATAKSAGSSGSIIKQ--------SPKPGDGNDKAADGPSVGPRGIYNGH--- 277 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~h--- 277 (496)
+.||+|++||+++........ . .......+....+.+ .....++.+ +|+......+..+..|
T Consensus 117 s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~ 195 (902)
T 2oaj_A 117 LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP 195 (902)
T ss_dssp ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT
T ss_pred cCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC
Confidence 999999999998765320000 0 000001111111111 112345667 8888887777777655
Q ss_pred ---------------CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee---cc-------------CCCCe
Q 010997 278 ---------------EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KA-------------HDADL 326 (496)
Q Consensus 278 ---------------~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~-------------~~~~v 326 (496)
...|++++|+|++ .+|++|+.||+|++||+++++....+.+ .. |...|
T Consensus 196 g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V 274 (902)
T 2oaj_A 196 FAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKI 274 (902)
T ss_dssp TCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred cCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence 5789999999998 7999999999999999976431000000 00 01112
Q ss_pred EEEE----------------------------------------------------------------------------
Q 010997 327 HCVD---------------------------------------------------------------------------- 330 (496)
Q Consensus 327 ~~i~---------------------------------------------------------------------------- 330 (496)
++++
T Consensus 275 ~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 354 (902)
T 2oaj_A 275 SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQ 354 (902)
T ss_dssp EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSS
T ss_pred eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCC
Confidence 2222
Q ss_pred --------------------------------------------------------------------------------
Q 010997 331 -------------------------------------------------------------------------------- 330 (496)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (496)
T Consensus 355 sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~ 434 (902)
T 2oaj_A 355 SPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGG 434 (902)
T ss_dssp CSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCS
T ss_pred CCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCC
Confidence
Q ss_pred --------ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE--ec-----cCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997 331 --------WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK--FE-----GHSAAVLCVQWSPDKSSVFGSSAEDG 395 (496)
Q Consensus 331 --------~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~--~~-----~h~~~i~~l~~sp~~~~llas~~~dg 395 (496)
|+| ++++||+|+.|++|++||+...... ...... +. +|...|.+|+|+|+++ +||+|+.||
T Consensus 435 ~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~--~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~Dg 510 (902)
T 2oaj_A 435 VRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQ--DNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETG 510 (902)
T ss_dssp BCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTT--TTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTS
T ss_pred cCCCCcccccc-cCcEEEEecCCCcEEEEECCCcccc--CCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCc
Confidence 234 4567777777777777777652100 000111 11 7889999999999999 578999999
Q ss_pred cEEEEECCCCCccc--------C--CCC-----------------CCC---CCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997 396 LLNIWDYEKVGKKV--------E--QGP-----------------RTT---NYPAGLFFQHAGHRDKVVDFHWNASDPWT 445 (496)
Q Consensus 396 ~i~iwd~~~~~~~~--------~--~~~-----------------~~~---~~~~~~~~~~~~h~~~V~~~~~~p~~~~l 445 (496)
+|+|||+....... . ... ... ....+++..+.+|.+.|++++|+|+| +
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~ 588 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--F 588 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--E
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc--E
Confidence 99999998641100 0 000 000 00013466788999999999999988 5
Q ss_pred EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH-hccceEEEeccC
Q 010997 446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSK 495 (496)
Q Consensus 446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s 495 (496)
+|+++. |++|+|||+.......... +..+. +|.+.|++|+|+
T Consensus 589 lAsgs~-------D~tv~lwd~~~~~~~~~~~-~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 589 VGIAYA-------AGSLMLIDRRGPAIIYMEN-IREISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEEET-------TSEEEEEETTTTEEEEEEE-GGGTCSSCCCCEEEEEEE
T ss_pred EEEEeC-------CCcEEEEECCCCeEEEEee-hhHhccccccceEEEEEE
Confidence 665555 4999999987421100011 24565 999999999998
No 86
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.7e-32 Score=268.42 Aligned_cols=257 Identities=18% Similarity=0.317 Sum_probs=206.4
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEe
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSG 214 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg 214 (496)
..+|.+.|++++|+|.++.+||+|+.||.|+|||+.+..... ....+...+.+|.. .|.+++|+|++ ++|++|
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-----~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-----PLREPVITLEGHTK-RVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----CBCSCSEEEECCSS-CEEEEEECSSBTTEEEEE
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----ccCCceEEecCCCC-eEEEEEECcCCCCEEEEE
Confidence 458999999999999778899999999999999998763221 11246678899988 79999999998 699999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee--ecCCCceeEEEEccCCCc
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~ 292 (496)
+.||.|++||+.++.. +..+ ..|...|.+++|+|++ .
T Consensus 151 ~~dg~i~iwd~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~ 189 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAA----------------------------------------VLTLGPDVHPDTIYSVDWSRDG-A 189 (402)
T ss_dssp ETTSCEEEEETTTTEE----------------------------------------EEEECTTTCCSCEEEEEECTTS-S
T ss_pred cCCCEEEEEECCCCCc----------------------------------------cEEEecCCCCCceEEEEECCCC-C
Confidence 9999999999975432 2455 6799999999999998 7
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeee-ccCCCC-eEEEEecCCCCcEEEEE---cCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVE-KAHDAD-LHCVDWNPLDDNLILTG---SADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~-v~~i~~sp~~~~~l~sg---s~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
+|++++.||.|++||+++++ ....+ ..|... +.+++|+| ++.+|++| +.|+.|++||+++.. .++..
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~-----~~~~~ 261 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLE-----EPLSL 261 (402)
T ss_dssp CEEEEETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCS-----SCSEE
T ss_pred EEEEEecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCcccc-----CCceE
Confidence 89999999999999999877 45555 577765 89999999 89999999 899999999999832 22333
Q ss_pred ec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 368 FE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 368 ~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
.. .|...|.+++|+|++..++++|+.||.|++||+..... ....+..+. |...|.+++|+|++..++
T Consensus 262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-----------~~~~l~~~~-~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-----------FLHYLSMFS-SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-----------CEEEEEEEC-CSSCCSEEEECCGGGSCG
T ss_pred EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-----------ceEeecccc-cCCcccceEEecccccce
Confidence 32 57788999999999997766777899999999987411 012333333 678999999999887644
Q ss_pred EEecCCCCCCCCCCeEEEeecCC
Q 010997 447 VSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+ .|+.+++|++..
T Consensus 330 --------s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 330 --------N--KCEIARFYKLHE 342 (402)
T ss_dssp --------G--GTEEEEEEEEET
T ss_pred --------e--cceeEEEEEcCC
Confidence 2 246999999864
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=256.24 Aligned_cols=261 Identities=19% Similarity=0.238 Sum_probs=213.5
Q ss_pred CCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 010997 96 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 175 (496)
Q Consensus 96 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~ 175 (496)
+.+..+.+|+.... ........|.+.|.+++|+| ++.+|++|+.||.|++|++....
T Consensus 36 ~~dg~v~vw~~~~~---------------------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~- 92 (313)
T 3odt_A 36 SRDGTVRLWSKDDQ---------------------WLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATS- 92 (313)
T ss_dssp ETTSEEEEEEESSS---------------------EEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCT-
T ss_pred EcCCcEEEEECCCC---------------------EEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecC-
Confidence 36778999886321 12334567899999999999 88999999999999999998752
Q ss_pred ccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCC
Q 010997 176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 255 (496)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (496)
..++...+.+|.. .|.+++| ++++|++|+.||.|++||...
T Consensus 93 --------~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d~~~---------------------------- 133 (313)
T 3odt_A 93 --------GEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWKEGS---------------------------- 133 (313)
T ss_dssp --------TSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTE----------------------------
T ss_pred --------CCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEcCCc----------------------------
Confidence 2245667888987 6899999 577999999999999999221
Q ss_pred CCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc-CCCCeEEEEecCC
Q 010997 256 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPL 334 (496)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~ 334 (496)
....+..|...|.+++|+|..+.++++++.||.|++||... ....+.. |...|.+++|+|
T Consensus 134 --------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~- 194 (313)
T 3odt_A 134 --------------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVD- 194 (313)
T ss_dssp --------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----EEEEECSSCSSCEEEEEEEE-
T ss_pred --------------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----eEEEEeccCcccEEEEEEcC-
Confidence 12567789999999999994448999999999999999332 3344444 899999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC
Q 010997 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (496)
Q Consensus 335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~ 414 (496)
++. +++++.||.|++||+++ +.++..+.+|...|.+++|+|++. |++++.||.|++||+...
T Consensus 195 ~~~-~~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~--------- 256 (313)
T 3odt_A 195 DGH-FISCSNDGLIKLVDMHT------GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENG--------- 256 (313)
T ss_dssp TTE-EEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTC---------
T ss_pred CCe-EEEccCCCeEEEEECCc------hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCC---------
Confidence 666 99999999999999998 788999999999999999999994 568999999999999874
Q ss_pred CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 415 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 415 ~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
..+..+..|...|.+++|+|++. ++ +++ .||.|++|++...
T Consensus 257 ------~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~-------~dg~i~iw~~~~~ 297 (313)
T 3odt_A 257 ------SLKQVITLPAISIWSVDCMSNGD-II-VGS-------SDNLVRIFSQEKS 297 (313)
T ss_dssp ------CEEEEEECSSSCEEEEEECTTSC-EE-EEE-------TTSCEEEEESCGG
T ss_pred ------ceeEEEeccCceEEEEEEccCCC-EE-EEe-------CCCcEEEEeCCCC
Confidence 45666788999999999999886 44 344 3599999999843
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6e-33 Score=274.55 Aligned_cols=278 Identities=20% Similarity=0.354 Sum_probs=216.8
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
..+|...|.++.+ ++++|++|+.||.|++||+.++ +....+.+|.. .|.+++| ++++|++|+
T Consensus 129 ~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~l~~--~~~~l~sg~ 190 (435)
T 1p22_A 129 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTG-SVLCLQY--DERVIITGS 190 (435)
T ss_dssp CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSS-CEEEEEC--CSSEEEEEE
T ss_pred ccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCC-cEEEEEE--CCCEEEEEc
Confidence 3467788999987 6789999999999999999887 66778899988 6899999 788999999
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCcee-----ccCCCCCCCCCCCCCCCCcCCe---eeeecCCCceeEEEEc
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSII-----KQSPKPGDGNDKAADGPSVGPR---GIYNGHEDTVEDVTFC 287 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~~ 287 (496)
.||+|++||+.++......... ......+ .......++.+.+|+....... ..+.+|...|.+++|
T Consensus 191 ~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 191 SDSTVRVWDVNTGEMLNTLIHH-----CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp TTSCEEEEESSSCCEEEEECCC-----CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred CCCeEEEEECCCCcEEEEEcCC-----CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999999999887543322211 0111111 1111234567778877766655 677899999999999
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
++ .++++|+.||.|++||+++++ ....+..|...|.+++|+ +.++++|+.||.|++||+++ +.++..
T Consensus 265 -~~-~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~------~~~~~~ 331 (435)
T 1p22_A 265 -DD-KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC------GACLRV 331 (435)
T ss_dssp -ET-TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEE
T ss_pred -CC-CEEEEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCC------CCEEEE
Confidence 44 689999999999999999887 677778999999999995 57999999999999999998 788999
Q ss_pred eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
+.+|...|.+++| ++. .|++|+.||.|++||+......... .....+..+.+|...|.+++| ++..++
T Consensus 332 ~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~--~~~~l~- 399 (435)
T 1p22_A 332 LEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP------AGTLCLRTLVEHSGRVFRLQF--DEFQIV- 399 (435)
T ss_dssp ECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC------TTTTEEEEECCCSSCCCCEEE--CSSCEE-
T ss_pred EeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc------ccchheeeccCCCCCeEEEEe--CCCEEE-
Confidence 9999999999999 455 5789999999999999764211110 111267778899999999999 455554
Q ss_pred EecCCCCCCCCCCeEEEeecCC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+|+.||+|++||+.+
T Consensus 400 -------s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 400 -------SSSHDDTILIWDFLN 414 (435)
T ss_dssp -------ECCSSSEEEEEC---
T ss_pred -------EEeCCCEEEEEECCC
Confidence 566679999999983
No 89
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.5e-33 Score=275.18 Aligned_cols=292 Identities=18% Similarity=0.306 Sum_probs=232.7
Q ss_pred EEEecCCCce-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 134 HKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 134 ~~~~~h~~~V-~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
....+|.+.| .++.+ ++++||+|+.||.|++||+.++ +....+.+|.. .|++++|+ +++|+
T Consensus 112 ~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~ 173 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTG------------KCLRTLVGHTG-GVWSSQMR--DNIII 173 (445)
T ss_dssp EEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTC------------CEEEECCCCSS-CEEEEEEE--TTEEE
T ss_pred EEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCC------------cEEEEEcCCCC-CEEEEEec--CCEEE
Confidence 3456899875 55554 5789999999999999999887 56678889988 68999997 56999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceec-----cCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK-----QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
+|+.||+|++||+.++......... ......+. ......++.+.+|+......+..+.+|...|.+++|
T Consensus 174 s~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 174 SGSTDRTLKVWNAETGECIHTLYGH-----TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred EEeCCCeEEEEECCcCcEEEEECCC-----CCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence 9999999999999877543322211 01111010 111234677888888888889999999999999999
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
++ .++++|+.||.|++||++++. ....+..|...|.+++| ++.++++|+.||.|++||+++ +..+..
T Consensus 248 -~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~------~~~~~~ 314 (445)
T 2ovr_B 248 -DG-RRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHT 314 (445)
T ss_dssp -CS-SCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEE
T ss_pred -CC-CEEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCC------CCEEEE
Confidence 44 689999999999999999877 66777789999999999 578999999999999999998 788999
Q ss_pred eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC---CCCCcceEEecCCCCc
Q 010997 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HRDKVVDFHWNASDPW 444 (496)
Q Consensus 368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~ 444 (496)
+.+|...+.++.+++ . +|++|+.||.|++||+... ..+..+.+ |...|++++|++ .
T Consensus 315 ~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~--~- 373 (445)
T 2ovr_B 315 LTGHQSLTSGMELKD--N-ILVSGNADSTVKIWDIKTG---------------QCLQTLQGPNKHQSAVTCLQFNK--N- 373 (445)
T ss_dssp ECCCCSCEEEEEEET--T-EEEEEETTSCEEEEETTTC---------------CEEEEECSTTSCSSCEEEEEECS--S-
T ss_pred EcCCcccEEEEEEeC--C-EEEEEeCCCeEEEEECCCC---------------cEEEEEccCCCCCCCEEEEEECC--C-
Confidence 999999999998864 3 5789999999999999874 33444444 888999999974 3
Q ss_pred EEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH-----HhccceEEEeccCC
Q 010997 445 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-----EKFKAHVISCTSKP 496 (496)
Q Consensus 445 l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-----~~h~~~v~~~~~sP 496 (496)
++++++. ||.|++||+. +++.+..+ .+|.+.|.+++|+|
T Consensus 374 ~l~s~~~-------dg~v~iwd~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 374 FVITSSD-------DGTVKLWDLK------TGEFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp EEEEEET-------TSEEEEEETT------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEEEeC-------CCeEEEEECC------CCceeeeeeccccCCCCceEEEEEecC
Confidence 5665444 5999999998 45555555 57889999999997
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=256.84 Aligned_cols=263 Identities=20% Similarity=0.333 Sum_probs=214.0
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
.++|+|++ ++ +||+|. |++|+|||+.++ +....+. +|.. .|++++|+|++++|++|+.||+|
T Consensus 28 ~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg------------~~~~~~~~~~~~~-~V~~v~~~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 28 LNLVDWSS-GN-VLAVAL-DNSVYLWSASSG------------DILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEV 91 (318)
T ss_dssp CBCEEECT-TS-EEEEEE-TTEEEEEETTTC------------CEEEEEECCSTTC-CEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEECC-CC-EEEEEe-CCEEEEEECCCC------------CEEEEEEecCCCC-eEEEEEECCCCCEEEEEECCCcE
Confidence 57899998 54 787765 899999999988 4444454 5555 69999999999999999999999
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (496)
++||+++++. +..+.+|...+.++.+. + .++++++.+
T Consensus 92 ~iw~~~~~~~----------------------------------------~~~~~~h~~~~~~~~~~--~-~~l~s~~~~ 128 (318)
T 4ggc_A 92 QLWDVQQQKR----------------------------------------LRNMTSHSARVGSLSWN--S-YILSSGSRS 128 (318)
T ss_dssp EEEETTTTEE----------------------------------------EEEEECCSSCEEEEEEE--T-TEEEEEETT
T ss_pred EEeecCCcee----------------------------------------EEEecCccceEEEeecC--C-CEEEEEecC
Confidence 9999976432 36778899888877665 3 689999999
Q ss_pred CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEE
Q 010997 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 380 (496)
+.+++|+...... ....+.+|...+.++.+++ ++.+|++++.||.|++||+++.... .........|.+.|.++++
T Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~ 204 (318)
T 4ggc_A 129 GHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAW 204 (318)
T ss_dssp SEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECCCCSCEEEEEE
T ss_pred CceEeeecCCCce-eEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCccc--ccceeeecccCCceEEEEe
Confidence 9999999987763 4556678999999999999 8999999999999999999873211 2345566778899999999
Q ss_pred cCCCCCEE--EEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997 381 SPDKSSVF--GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG 458 (496)
Q Consensus 381 sp~~~~ll--as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~ 458 (496)
+|++..++ ++++.++.|++||.... .......|...+..+.|+|.+..++++ +|+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~------sg~~ 262 (318)
T 4ggc_A 205 CPWQSNVLATGGGTSDRHIRIWNVCSG----------------ACLSAVDAHSQVCSILWSPHYKELISG------HGFA 262 (318)
T ss_dssp CTTSTTEEEEEECTTTCEEEEEETTTC----------------CEEEEEECSSCEEEEEEETTTTEEEEE------ECTT
T ss_pred cCCCCcEEEEEecCCCCEEEEEecccc----------------cccccccceeeeeeeeecccccceEEE------EEcC
Confidence 99988765 45667899999998874 122234567789999999998887754 3455
Q ss_pred CCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 459 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 459 Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|+.|+|||+. +++++.++.+|.+.|++++|+|
T Consensus 263 d~~i~iwd~~------~~~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 263 QNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp TCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred CCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence 7999999998 6788889999999999999998
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.4e-33 Score=275.51 Aligned_cols=245 Identities=22% Similarity=0.373 Sum_probs=206.9
Q ss_pred ceEEEecCCCce-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 132 KKHKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 132 ~~~~~~~h~~~V-~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
......+|.+.| .++.+ ++++|++|+.||.|++||+.++ +....+.+|.+ .|++++|+|++ +
T Consensus 113 ~~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~------------~~~~~~~~h~~-~V~~l~~~~~~-~ 175 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINK------------KFLLQLSGHDG-GVWALKYAHGG-I 175 (464)
T ss_dssp EEEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECSTT-E
T ss_pred ceEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCC------------cEEEEEeCCCc-CEEEEEEcCCC-E
Confidence 344667898885 66666 4569999999999999999887 66778899998 79999999988 8
Q ss_pred eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc--
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-- 288 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-- 288 (496)
|++|+.||+|++||++++.. +..+.+|...|.+++|++
T Consensus 176 l~s~s~dg~i~vwd~~~~~~----------------------------------------~~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKGCC----------------------------------------THVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp EEEEETTSCEEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEEEESS
T ss_pred EEEEeCCCCEEEEECCCCcE----------------------------------------EEEECCCCCccEEEEEecCC
Confidence 99999999999999975432 366778999999999995
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCcc---------------------ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSP---------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~ 347 (496)
++ .++++|+.||.|++||+++.... ......+|...|.++. + ++.+|++|+.||.
T Consensus 216 ~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~ 291 (464)
T 3v7d_B 216 NI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNT 291 (464)
T ss_dssp SC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSC
T ss_pred CC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCe
Confidence 44 78999999999999999876522 1345667888888884 4 6789999999999
Q ss_pred EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997 348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (496)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (496)
|++||+++ +.++..+.+|...|.+++|+|++.. +++|+.||.|++||+.+. ..+..+.
T Consensus 292 i~vwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~---------------~~~~~~~ 349 (464)
T 3v7d_B 292 LIVWDVAQ------MKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENG---------------ELMYTLQ 349 (464)
T ss_dssp EEEEETTT------TEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTT---------------EEEEEEC
T ss_pred EEEEECCC------CcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC---------------cEEEEEe
Confidence 99999998 7889999999999999999999985 679999999999999874 5677888
Q ss_pred CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+|...|.+++|++ . .+++++. ||.|++||+..
T Consensus 350 ~h~~~v~~~~~~~--~-~l~s~s~-------dg~v~vwd~~~ 381 (464)
T 3v7d_B 350 GHTALVGLLRLSD--K-FLVSAAA-------DGSIRGWDAND 381 (464)
T ss_dssp CCSSCEEEEEECS--S-EEEEEET-------TSEEEEEETTT
T ss_pred CCCCcEEEEEEcC--C-EEEEEeC-------CCcEEEEECCC
Confidence 9999999999984 3 5565444 59999999984
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.2e-34 Score=269.10 Aligned_cols=243 Identities=23% Similarity=0.300 Sum_probs=186.0
Q ss_pred EEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcC
Q 010997 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269 (496)
Q Consensus 190 ~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (496)
.+.+|.+ .|++++|+|++++|++|+.|++|+|||+.++.. .
T Consensus 8 ~~~~H~~-~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------~ 48 (316)
T 3bg1_A 8 VDTSHED-MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------I 48 (316)
T ss_dssp ------C-CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE--------------------------------------E
T ss_pred ecccccC-eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--------------------------------------E
Confidence 5678988 799999999999999999999999999875321 1
Q ss_pred CeeeeecCCCceeEEEEccC-CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEEcCCC
Q 010997 270 PRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADN 346 (496)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~dg 346 (496)
.+..+.+|.+.|.+++|++. .+.+|++|+.|++|++||++++.......+.+|...|++++|+| + +.+|++|+.||
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~lasgs~D~ 127 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILACGSSDG 127 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEEECSSS
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEEEcCCC
Confidence 23568899999999999753 23789999999999999998875334556778999999999999 5 78999999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC----------------CCEEEEEeCCCcEEEEECCCCCcccC
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK----------------SSVFGSSAEDGLLNIWDYEKVGKKVE 410 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~----------------~~llas~~~dg~i~iwd~~~~~~~~~ 410 (496)
.|++||++.... ......+.+|...|.+++|+|+. ..+||+|+.|+.|++||+...+
T Consensus 128 ~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---- 200 (316)
T 3bg1_A 128 AISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---- 200 (316)
T ss_dssp CEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS----
T ss_pred CEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC----
Confidence 999999986210 11245567899999999999973 1257899999999999986521
Q ss_pred CCCCCCCCCCeeEEEecCCCCCcceEEecCCC---CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997 411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 487 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~---~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~ 487 (496)
....+..+.+|...|.+++|+|++ ..+++|++.| ++|+||++...... ......+..|.+
T Consensus 201 --------~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D-------~~v~iw~~~~~~~~--~~~~~~~~~~~~ 263 (316)
T 3bg1_A 201 --------QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD-------GRVFIWTCDDASSN--TWSPKLLHKFND 263 (316)
T ss_dssp --------CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT-------CEEEEEECSSTTCC--CCBCCEEEECSS
T ss_pred --------ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC-------CeEEEEEccCcccc--chhhhhhhcCCC
Confidence 113456678999999999999986 3567766655 99999999742110 001223467889
Q ss_pred eEEEeccCC
Q 010997 488 HVISCTSKP 496 (496)
Q Consensus 488 ~v~~~~~sP 496 (496)
.|.+++|+|
T Consensus 264 ~v~~v~~sp 272 (316)
T 3bg1_A 264 VVWHVSWSI 272 (316)
T ss_dssp CEEEEEECT
T ss_pred cEEEEEEcC
Confidence 999999998
No 93
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-33 Score=275.25 Aligned_cols=327 Identities=11% Similarity=0.124 Sum_probs=218.5
Q ss_pred ccccCChhHhHhhhhCcCCCCcceEeccC-CcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCc
Q 010997 46 HWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNE 124 (496)
Q Consensus 46 ~w~~~~~~ly~~~~~~~~~wps~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~ 124 (496)
.|+.....+..+...|.- +..++.|.| + ...|+. ++.+..+.||++.....
T Consensus 47 ~w~~~g~~~~~~~~~h~~--~V~~~~~s~~~--------~~~l~s-----~s~dg~v~vwd~~~~~~------------- 98 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPN--SITSSAVSPGE--------TPYLIT-----GSDQGVIKIWNLKEIIV------------- 98 (437)
T ss_dssp GGGCCCCEEEEECTTTTS--CEEEEEEECSS--------SCEEEE-----EETTSEEEEEEHHHHHT-------------
T ss_pred cccccceEEeeeccCCCC--ceEEEEECCCC--------CCEEEE-----ecCCceEEEeECccccc-------------
Confidence 477665555444344433 556777777 3 123333 34678999998642100
Q ss_pred ccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC---CCCCccccCCCCCCCCceEEecC---CCCc
Q 010997 125 EARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE---AQPNRHAVLGATNSRPDLILTGH---QDNA 198 (496)
Q Consensus 125 ~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~l~~h---~~~~ 198 (496)
.. ..+.....+|.+.|++++|+| ++.+|++|+.||.|++||+. .+....... ...+..+..+ ....
T Consensus 99 --~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~ 170 (437)
T 3gre_A 99 --GE-VYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN----CECIRKINLKNFGKNEY 170 (437)
T ss_dssp --TC-CCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEE----EEEEEEEEGGGGSSCCC
T ss_pred --Cc-ccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccc----cceeEEEEccCcccccC
Confidence 00 111223447999999999999 88999999999999999995 331110000 0111122211 1224
Q ss_pred ceeee--ecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997 199 EFALA--MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (496)
Q Consensus 199 v~~l~--~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (496)
+.++. +++++.+|++|+.||.|++||++++.. +..+.+
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------------------------~~~~~~ 210 (437)
T 3gre_A 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----------------------------------------LQIIEN 210 (437)
T ss_dssp EEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE----------------------------------------EEEEEC
T ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee----------------------------------------eEEEcc
Confidence 55666 567899999999999999999975432 355666
Q ss_pred --CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-cCCCCeEEEEecCC---CCcEEEEEcCCCcEEE
Q 010997 277 --HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL---DDNLILTGSADNSVRM 350 (496)
Q Consensus 277 --h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~---~~~~l~sgs~dg~i~i 350 (496)
|...|++++|+|++ .+|++|+.||.|++||++.+. ....+. .|...|.+++|+|. ++.+|++|+.||.|++
T Consensus 211 ~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 211 SPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp CGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred CCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCcc--EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 88999999999998 799999999999999999876 445443 78889999966651 5779999999999999
Q ss_pred EeCCCCCCCCCCCCceEecc--------------------------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 351 FDRRNLTSNGVGSPINKFEG--------------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~--------------------------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
||+++ +..+..+.+ |...|++++|+ ++. +|++|+.|+.|++||+..
T Consensus 288 wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 288 WNFVK------GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EETTT------TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTC
T ss_pred EEcCC------CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCC
Confidence 99997 454444443 56678889999 555 578999999999999987
Q ss_pred CCcccCCCCCCC----------------------CCCCeeEEEecCCCCCcceEEecCC-CCcEEEEecCCCCCCCCCCe
Q 010997 405 VGKKVEQGPRTT----------------------NYPAGLFFQHAGHRDKVVDFHWNAS-DPWTVVSVSDDCDSTGGGGT 461 (496)
Q Consensus 405 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~h~~~V~~~~~~p~-~~~l~~s~s~d~~sgg~Dg~ 461 (496)
............ ............|...|++++|+++ +..+++|++. ||.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-------dG~ 432 (437)
T 3gre_A 360 LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN-------SGL 432 (437)
T ss_dssp GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET-------TSC
T ss_pred cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC-------Cce
Confidence 532221110000 0000001112348999999999997 3456776555 499
Q ss_pred EEEee
Q 010997 462 LQIWR 466 (496)
Q Consensus 462 i~iw~ 466 (496)
|+||+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-32 Score=284.29 Aligned_cols=304 Identities=17% Similarity=0.283 Sum_probs=234.3
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCc-ceeeeecC--CCCceEEe
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA-EFALAMCP--TEPYVLSG 214 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~-v~~l~~~p--~~~~l~sg 214 (496)
.|.+.|++++|+| ++++||+++ ++.|+|||+.++.. ..+....+.+|.. . |++++|+| ++++|++|
T Consensus 16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~--------~~~~~~~~~~h~~-~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDS--------KVPPVVQFTGHGS-SVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCC--------SSCSEEEECTTTT-SCEEEEEECSSTTCCEEEEE
T ss_pred CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCC--------ccccceEEecCCC-ceEEEEEECcCCCCCEEEEe
Confidence 6889999999999 888999988 78999999986511 1145678899988 6 99999999 99999999
Q ss_pred cCCCcEEEEecCCc--------cccccCCc----cccccCCCCCceeccCC--CCCCCCCCCCCCCCcCCeeeeecCCCc
Q 010997 215 GKDKSVVLWSIQDH--------ITSSATDP----ATAKSAGSSGSIIKQSP--KPGDGNDKAADGPSVGPRGIYNGHEDT 280 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (496)
+.||.|++||+.++ ........ ............+.... ....+.+.+|+ ....+..+.+|...
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR 162 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence 99999999999644 11111100 00000011111111111 11124455565 45567888899999
Q ss_pred eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC---CeEEEEecCCC-CcEEEEEcCCCcEEEEeCCCC
Q 010997 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA---DLHCVDWNPLD-DNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~i~~sp~~-~~~l~sgs~dg~i~iwd~~~~ 356 (496)
|.+++|+|+++.++++++.|+.|++||+++.+ ....+..|.. .|.+++|+| + +.+|++++.||.|++||+++
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~- 238 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS- 238 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT-
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC-
Confidence 99999999995589999999999999998876 5667778988 999999999 7 99999999999999999998
Q ss_pred CCCCCCCCceEe-c---cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC---
Q 010997 357 TSNGVGSPINKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--- 429 (496)
Q Consensus 357 ~~~~~~~~~~~~-~---~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h--- 429 (496)
+..+..+ . .|...|.+++|+ ++. +|++++.|+.|++||+... ..+..+..+
T Consensus 239 -----~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~---------------~~~~~~~~~~~~ 296 (615)
T 1pgu_A 239 -----GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTS---------------KCVQKWTLDKQQ 296 (615)
T ss_dssp -----CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTT---------------EEEEEEECCTTC
T ss_pred -----CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCC---------------cEEEEEcCCCCc
Confidence 7888888 6 899999999999 777 5679999999999999874 344445554
Q ss_pred -CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 430 -RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 430 -~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
...+.++.|. ++..+ ++ |+.||.|++|++. .++.+..+.+|.+.|.+++| |
T Consensus 297 ~~~~~~~~~~~-~~~~l-~~-------~~~~g~i~~~d~~------~~~~~~~~~~~~~~v~~~~~-~ 348 (615)
T 1pgu_A 297 LGNQQVGVVAT-GNGRI-IS-------LSLDGTLNFYELG------HDEVLKTISGHNKGITALTV-N 348 (615)
T ss_dssp GGGCEEEEEEE-ETTEE-EE-------EETTSCEEEEETT------EEEEEEEECCCSSCEEEEET-T
T ss_pred ccCceeEEEeC-CCCeE-EE-------EECCCCEEEEECC------CCcEEEEEeCCCCCEEEEEe-c
Confidence 3567888886 55554 44 4445999999998 56777788899999999998 6
No 95
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6e-33 Score=286.66 Aligned_cols=305 Identities=14% Similarity=0.143 Sum_probs=221.0
Q ss_pred EEecCCC---ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-e---cCCCCcceeeeecCC
Q 010997 135 KTIIHPG---EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-T---GHQDNAEFALAMCPT 207 (496)
Q Consensus 135 ~~~~h~~---~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~---~h~~~~v~~l~~~p~ 207 (496)
...+|.+ .|++++|+|+++++|++++.||.|++||+.++ +....+ . +|.. .|.+++|+ +
T Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~-~v~~~~~~-~ 263 (615)
T 1pgu_A 198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------------EFLKYIEDDQEPVQG-GIFALSWL-D 263 (615)
T ss_dssp EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------------CEEEECCBTTBCCCS-CEEEEEES-S
T ss_pred eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC------------CEeEEecccccccCC-ceEEEEEc-C
Confidence 4456888 99999999932899999999999999999887 555666 5 7776 79999999 9
Q ss_pred CCceEEecCCCcEEEEecCCccccccCCccccccCCC-------CCceeccCCCCCCCCCCCCCCCCcCCeeeeec----
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS-------SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG---- 276 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 276 (496)
+.+|++++.||.|++||+.++................ ....+. .....+.+.+|+.....++..+.+
T Consensus 264 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 341 (615)
T 1pgu_A 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII--SLSLDGTLNFYELGHDEVLKTISGHNKG 341 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE--EEETTSCEEEEETTEEEEEEEECCCSSC
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE--EEECCCCEEEEECCCCcEEEEEeCCCCC
Confidence 9999999999999999998764432221110000000 000000 011233444444444444444444
Q ss_pred -----------------------------CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC---------------
Q 010997 277 -----------------------------HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT--------------- 312 (496)
Q Consensus 277 -----------------------------h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------- 312 (496)
|...|.+++| +.+ ..+++++.|+.|++||++...
T Consensus 342 v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~ 419 (615)
T 1pgu_A 342 ITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 419 (615)
T ss_dssp EEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSE
T ss_pred EEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCC
Confidence 5555555556 334 578888888888888876421
Q ss_pred -----------------ccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCc-eEeccCCC
Q 010997 313 -----------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPI-NKFEGHSA 373 (496)
Q Consensus 313 -----------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~-~~~~~h~~ 373 (496)
......+ .|...+.+++|+ +.+|++++. ||.|++||+.. +... ..+..|..
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~------~~~~~~~~~~~~~ 489 (615)
T 1pgu_A 420 TAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSD------LEVSFDLKTPLRA 489 (615)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTE------EEEEEECSSCCSS
T ss_pred EEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc---CCEEEEeecCCCeEEEEECCC------ccccccccCCccC
Confidence 0012222 467889999997 689999999 99999999997 3333 67788999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecC----------CC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNA----------SD 442 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p----------~~ 442 (496)
.|.+++|+|++. +|++++.||.|++||+... ..+..+.+ |...|++++|+| ++
T Consensus 490 ~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 490 KPSYISISPSET-YIAAGDVMGKILLYDLQSR---------------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEETTTT---------------EEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred ceEEEEECCCCC-EEEEcCCCCeEEEeeCCCC---------------cceeEeecCCCCceeEEEEcCccccccccccCC
Confidence 999999999998 4679999999999999874 45556677 999999999999 77
Q ss_pred CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 443 PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 443 ~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.+ +++ |+.||.|+||++.. ..+.+..+.+|...|.+++|+|
T Consensus 554 ~~-l~~-------~~~dg~i~iw~~~~-----~~~~~~~~~~h~~~v~~l~~s~ 594 (615)
T 1pgu_A 554 DL-VAT-------GSLDTNIFIYSVKR-----PMKIIKALNAHKDGVNNLLWET 594 (615)
T ss_dssp CE-EEE-------EETTSCEEEEESSC-----TTCCEEETTSSTTCEEEEEEEE
T ss_pred CE-EEE-------EcCCCcEEEEECCC-----CceechhhhcCccceEEEEEcC
Confidence 65 454 44459999999983 1266777899999999999986
No 96
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-31 Score=286.46 Aligned_cols=285 Identities=20% Similarity=0.316 Sum_probs=231.4
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
+..++.|.|+ ...|+.|. .+..+.||+... ........+|.+.|++
T Consensus 15 ~v~~i~~sp~--------~~~la~~~-----~~g~v~iwd~~~---------------------~~~~~~~~~~~~~v~~ 60 (814)
T 3mkq_A 15 RVKGIDFHPT--------EPWVLTTL-----YSGRVEIWNYET---------------------QVEVRSIQVTETPVRA 60 (814)
T ss_dssp CEEEEEECSS--------SSEEEEEE-----TTSEEEEEETTT---------------------TEEEEEEECCSSCEEE
T ss_pred ceEEEEECCC--------CCEEEEEe-----CCCEEEEEECCC---------------------CceEEEEecCCCcEEE
Confidence 4557778775 13454443 456888887421 0122344579999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~ 225 (496)
++|+| ++++||+|+.||.|+|||+.++ +....+.+|.+ .|++++|+|++++|++|+.||.|++||+
T Consensus 61 ~~~s~-~~~~l~~~~~dg~i~vw~~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 126 (814)
T 3mkq_A 61 GKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (814)
T ss_dssp EEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred EEEeC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence 99999 8899999999999999999887 66678889987 6999999999999999999999999999
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc-CCCceEEEEcCCCeEE
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-SSAQEFCSVGDDSCLI 304 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~ 304 (496)
.++. .....+.+|...|.+++|+| ++ ..|++++.||.|+
T Consensus 127 ~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 127 ENNW---------------------------------------ALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVK 166 (814)
T ss_dssp GGTS---------------------------------------EEEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEE
T ss_pred CCCc---------------------------------------eEEEEEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEE
Confidence 7531 12356778999999999999 55 7999999999999
Q ss_pred EEEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC
Q 010997 305 LWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383 (496)
Q Consensus 305 iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 383 (496)
+||++.+.. .......+...+.+++|+|. ++.+|++|+.||.|++||+++ +..+..+.+|...|.+++|+|+
T Consensus 167 vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 167 VWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp EEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSS
T ss_pred EEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC------CcEEEEEcCCCCCEEEEEEcCC
Confidence 999988763 23333345589999999983 578999999999999999998 7888999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE-EEEecCCCCCCCCCCeE
Q 010997 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT-VVSVSDDCDSTGGGGTL 462 (496)
Q Consensus 384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l-~~s~s~d~~sgg~Dg~i 462 (496)
+. +|++++.||.|++||+... ..+..+..|...|.+++|+|++..+ +++++ |+.+
T Consensus 240 ~~-~l~~~~~dg~v~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~ 295 (814)
T 3mkq_A 240 LP-IIISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGF--------DNGF 295 (814)
T ss_dssp SS-EEEEEETTSCEEEEETTTC---------------SEEEEECCSSSSEEEEEECTTCGGGEEEEEE--------TTEE
T ss_pred CC-EEEEEeCCCeEEEEECCCC---------------cEEEEeecCCCcEEEEEEccCCCceEEEEEe--------CCCE
Confidence 98 5679999999999999874 4566778888999999999998765 44333 3678
Q ss_pred EEeecCC
Q 010997 463 QIWRMSD 469 (496)
Q Consensus 463 ~iw~~~~ 469 (496)
.+|++..
T Consensus 296 ~~~~~~~ 302 (814)
T 3mkq_A 296 TVLSLGN 302 (814)
T ss_dssp EEEECSC
T ss_pred EEEEcCC
Confidence 8888753
No 97
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-33 Score=313.08 Aligned_cols=310 Identities=18% Similarity=0.253 Sum_probs=240.5
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+|.+.|.+++|+| ++.++++++.||.|++||+.+. .....+.+|.. .|.+++|+|++++|++++.
T Consensus 837 ~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~------------~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSR------------LKVADCRGHLS-WVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp CSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred CCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC------------ceeeecCCCcc-ceEEEEECCCCCEEEEEeC
Confidence 38999999999999 8899999999999999999887 56678889988 6999999999999999999
Q ss_pred CCcEEEEecCCccccccCCcc--------------------------------ccccCCCCCceeccC-------CCCCC
Q 010997 217 DKSVVLWSIQDHITSSATDPA--------------------------------TAKSAGSSGSIIKQS-------PKPGD 257 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~-------~~~~~ 257 (496)
||+|++||+.+.......... ............... .....
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 999999997643111000000 000000000111111 12345
Q ss_pred CCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc
Q 010997 258 GNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN 337 (496)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 337 (496)
+.+.+|+.........+.+|...|.+++|+|++ .++++++.||.|++||+.++. . .....|...|.+++|+| + .
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~--~-~~~~~~~~~v~~~~~~~-~-~ 1056 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGD--Y-VFLQAHQETVKDFRLLQ-D-S 1056 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTE--E-ECCBCCSSCEEEEEECS-S-S
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc--e-EEEecCCCcEEEEEEcC-C-C
Confidence 677888888888888999999999999999998 789999999999999999876 2 34458999999999998 4 4
Q ss_pred EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCC
Q 010997 338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417 (496)
Q Consensus 338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~ 417 (496)
.+++++.||.|++||+.+ +..+..+.+|...|.+++|+|++.. |++++.|+.|++||+...
T Consensus 1057 ~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~s~d~~~-l~s~s~d~~v~iwd~~~~------------ 1117 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVIT------GRIERDFTCHQGTVLSCAISSDATK-FSSTSADKTAKIWSFDLL------------ 1117 (1249)
T ss_dssp EEEEEESSSEEEEEETTT------TCCCEEEECCSSCCCCEEECSSSSS-CEEECCSSCCCEECSSSS------------
T ss_pred cEEEEECCCcEEEEECCC------CceeEEEcccCCcEEEEEECCCCCE-EEEEcCCCcEEEEECCCc------------
Confidence 678899999999999998 7889999999999999999999996 579999999999999874
Q ss_pred CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCc---hHHHHHHHhccceEEEecc
Q 010997 418 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ---DEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 418 ~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~ 494 (496)
..+..+.+|...|++++|+|++.+++ +|+.||.|++||+........ ........+|.+.|.+++|
T Consensus 1118 ---~~~~~l~~h~~~v~~~~~s~dg~~la--------t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f 1186 (1249)
T 3sfz_A 1118 ---SPLHELKGHNGCVRCSAFSLDGILLA--------TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186 (1249)
T ss_dssp ---SCSBCCCCCSSCEEEEEECSSSSEEE--------EEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEE
T ss_pred ---ceeeeeccCCCcEEEEEECCCCCEEE--------EEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEE
Confidence 23344678999999999999887654 444569999999984221110 1112334789999999999
Q ss_pred CC
Q 010997 495 KP 496 (496)
Q Consensus 495 sP 496 (496)
+|
T Consensus 1187 s~ 1188 (1249)
T 3sfz_A 1187 SP 1188 (1249)
T ss_dssp CT
T ss_pred CC
Confidence 97
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-32 Score=268.49 Aligned_cols=291 Identities=12% Similarity=0.067 Sum_probs=206.6
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC---CccccCCCCC---------------------------------
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP---NRHAVLGATN--------------------------------- 184 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~---~~~~~~~~~~--------------------------------- 184 (496)
.++.+++|+| ++++|+++ .++.|++||+.++. ..........
T Consensus 5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4689999999 77777666 46799999998875 1111000000
Q ss_pred ---------CCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecC--CccccccCCccccccCCCCCceeccC
Q 010997 185 ---------SRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQS 252 (496)
Q Consensus 185 ---------~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
..+.....+|.+ .|++++|+|++++| ++|+.||.|++||+. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~----------------------- 138 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYS-YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN----------------------- 138 (450)
T ss_dssp -----------------CCCC-CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-----------------------
T ss_pred cccccCccccCCCCCCCccCC-ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-----------------------
Confidence 001112234554 69999999999986 899999999999997 332
Q ss_pred CCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc--ceeeeccCCCCeEE
Q 010997 253 PKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHC 328 (496)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~ 328 (496)
.+..+. .|...|.+++|+|++ .+|++|+.||.|++|++...... ....+.+|...|++
T Consensus 139 -----------------~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 200 (450)
T 2vdu_B 139 -----------------VLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTD 200 (450)
T ss_dssp -----------------CEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEE
T ss_pred -----------------eeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEE
Confidence 124443 567899999999998 78999999999999999887632 22356689999999
Q ss_pred EEecCCC---CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 329 VDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 329 i~~sp~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
++|+| + +.+|++|+.|+.|++||+++ +..+.. +.+|...|.+++|+ ++. +|++++.|+.|+|||+..
T Consensus 201 ~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 201 VHLIK-DSDGHQFIITSDRDEHIKISHYPQ------CFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp EEEEE-CTTSCEEEEEEETTSCEEEEEESC------TTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTT
T ss_pred EEEcC-CCCCCcEEEEEcCCCcEEEEECCC------CceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCC
Confidence 99999 8 88999999999999999998 677776 56899999999999 887 567999999999999987
Q ss_pred CCcccCCCCCC--------CCCCCee--EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC
Q 010997 405 VGKKVEQGPRT--------TNYPAGL--FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP 474 (496)
Q Consensus 405 ~~~~~~~~~~~--------~~~~~~~--~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~ 474 (496)
........... ...++.. ......+...|.+++|+|++.++++++.. |+.|+||++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-------d~~i~iw~~~~~---- 340 (450)
T 2vdu_B 272 GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA-------TKCIIILEMSEK---- 340 (450)
T ss_dssp CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT-------CSEEEEEEECSS----
T ss_pred CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC-------CCeEEEEEeccC----
Confidence 42111000000 0000000 00000234578999999988877754433 599999999211
Q ss_pred ch---HHHHHHHhccceEEEeccCC
Q 010997 475 QD---EVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 475 ~~---~~~~~l~~h~~~v~~~~~sP 496 (496)
.+ ..+..+..| +.|.+++|+|
T Consensus 341 ~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 341 QKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp STTCEEEEEEEECS-SCEEEEEEET
T ss_pred CCCceeeccEeccC-CceEEEEecC
Confidence 23 556667777 8899999987
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.4e-31 Score=264.25 Aligned_cols=253 Identities=18% Similarity=0.353 Sum_probs=201.7
Q ss_pred eEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 189 LILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
....+|.+ .|++++|+|+ +.+|++|+.||.|++||+.+...... ....
T Consensus 122 ~~~~~h~~-~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------------------~~~~ 170 (430)
T 2xyi_A 122 EIKINHEG-EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------------------PSGE 170 (430)
T ss_dssp EEEEEESS-CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------------------TTCC
T ss_pred EEEEcCCC-cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------------------cccc
Confidence 34567877 6999999997 67999999999999999975321100 0012
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-----ceeeeccCCCCeEEEEecCCCCcEEEEE
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDADLHCVDWNPLDDNLILTG 342 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~i~~sp~~~~~l~sg 342 (496)
..+...+.+|...|.+++|+|++..+|++|+.||.|++||++..... ....+..|...|.+++|+|.++.+|+++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 34457788999999999999998559999999999999999874321 1345568999999999999778899999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997 343 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (496)
Q Consensus 343 s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 422 (496)
+.||.|++||++.... ..++..+..|...|++++|+|++.++|++|+.||.|++||++... ..
T Consensus 251 ~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------------~~ 313 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------------LK 313 (430)
T ss_dssp ETTSEEEEEETTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------------SC
T ss_pred eCCCeEEEEECCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------------CC
Confidence 9999999999997321 257778889999999999999999888999999999999998742 23
Q ss_pred EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCc--------hHHHHHHHhccceEEEecc
Q 010997 423 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--------DEVLAELEKFKAHVISCTS 494 (496)
Q Consensus 423 ~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~--------~~~~~~l~~h~~~v~~~~~ 494 (496)
+..+.+|...|.+++|+|++..++++++.| |.|+|||+........ .+.+..+.+|...|.+++|
T Consensus 314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 314 LHSFESHKDEIFQVQWSPHNETILASSGTD-------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETT-------SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred eEEeecCCCCEEEEEECCCCCCEEEEEeCC-------CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 455678999999999999998888866655 9999999984211100 1445566788999999999
Q ss_pred CC
Q 010997 495 KP 496 (496)
Q Consensus 495 sP 496 (496)
+|
T Consensus 387 ~p 388 (430)
T 2xyi_A 387 NP 388 (430)
T ss_dssp CS
T ss_pred CC
Confidence 97
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-31 Score=262.41 Aligned_cols=328 Identities=14% Similarity=0.210 Sum_probs=216.5
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCC-----
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP----- 140 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----- 140 (496)
+..++.|.|+ ...|+.| +.+..+.||+........ ..............+|.
T Consensus 30 ~V~~v~~s~~--------g~~la~g-----~~dg~v~iw~~~~~~~~~----------~~~~~~~~~~~~~~~h~~~~~~ 86 (447)
T 3dw8_B 30 IISTVEFNHS--------GELLATG-----DKGGRVVIFQQEQENKIQ----------SHSRGEYNVYSTFQSHEPEFDY 86 (447)
T ss_dssp SEEEEEECSS--------SSEEEEE-----ETTSEEEEEEECC---------------CCCCCCEEEEEEEECCCCEEEG
T ss_pred cEEEEEECCC--------CCEEEEE-----cCCCeEEEEEecCCCCCC----------cccccceeEecccccccccccc
Confidence 5567888774 1344443 367889999876422100 00001111233455788
Q ss_pred -------CceeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCCccc---cCC----------CCCC-------------
Q 010997 141 -------GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQPNRHA---VLG----------ATNS------------- 185 (496)
Q Consensus 141 -------~~V~~l~~~p~~~--~~lat~~~dg~i~iwd~~~~~~~~~---~~~----------~~~~------------- 185 (496)
+.|++++|+| ++ .+|++++.||.|++||+........ ... ....
T Consensus 87 ~~~~~~~~~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 87 LKSLEIEEKINKIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp GGTEEECCCCCEEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred cccccccCceEEEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 8899999999 55 7899999999999999876421100 000 0000
Q ss_pred -CCceE-EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCC
Q 010997 186 -RPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 263 (496)
Q Consensus 186 -~~~~~-l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (496)
.+... ..+|.. .|++++|+|++++|++| .||.|++||++..........
T Consensus 166 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~--------------------------- 216 (447)
T 3dw8_B 166 ASPRRIFANAHTY-HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVD--------------------------- 216 (447)
T ss_dssp EEEEEEECSCCSS-CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE---------------------------
T ss_pred ccceEEeccCCCc-ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeee---------------------------
Confidence 00112 357877 79999999999999999 799999999984221100000
Q ss_pred CCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc--ceeeeccCCC------------CeEEE
Q 010997 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDA------------DLHCV 329 (496)
Q Consensus 264 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~------------~v~~i 329 (496)
.. ...+.+|...|.+++|+|+++.+|++|+.||.|++||++++... ....+..|.. .|.++
T Consensus 217 ----~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (447)
T 3dw8_B 217 ----IK-PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV 291 (447)
T ss_dssp ----CC-CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEE
T ss_pred ----cc-cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEE
Confidence 00 01356799999999999998679999999999999999987721 1455666765 89999
Q ss_pred EecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC---------------EEEEEEcCCCCCEEEEEeCC
Q 010997 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA---------------VLCVQWSPDKSSVFGSSAED 394 (496)
Q Consensus 330 ~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~---------------i~~l~~sp~~~~llas~~~d 394 (496)
+|+| ++.+|++++. +.|++||+++. +.++..+.+|... +..++|+|++.+ |++|+.|
T Consensus 292 ~~s~-~g~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~d 363 (447)
T 3dw8_B 292 KFSH-SGRYMMTRDY-LSVKVWDLNME-----NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYN 363 (447)
T ss_dssp EECT-TSSEEEEEES-SEEEEEETTCC-----SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECST
T ss_pred EECC-CCCEEEEeeC-CeEEEEeCCCC-----ccccceeeccccccccccccccccccccceEEEECCCCCE-EEEeccC
Confidence 9999 9999999999 99999999863 3677778777542 335999999995 5799999
Q ss_pred CcEEEEECCCCCcccCCCCCCC-----CCC------------CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 395 GLLNIWDYEKVGKKVEQGPRTT-----NYP------------AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 395 g~i~iwd~~~~~~~~~~~~~~~-----~~~------------~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
|.|+|||+.............. ..+ .........+...|..++|+|++..++ +++.
T Consensus 364 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la-~~~~------ 436 (447)
T 3dw8_B 364 NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIA-VATT------ 436 (447)
T ss_dssp TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEE-EECS------
T ss_pred CEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEE-EEec------
Confidence 9999999987432110000000 000 001111224456799999999887654 4333
Q ss_pred CCCeEEEeecC
Q 010997 458 GGGTLQIWRMS 468 (496)
Q Consensus 458 ~Dg~i~iw~~~ 468 (496)
+.+++|.-.
T Consensus 437 --~~~~~~~~~ 445 (447)
T 3dw8_B 437 --NNLYIFQDK 445 (447)
T ss_dssp --SCEEEEECC
T ss_pred --ceeeeeccc
Confidence 358888754
No 101
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-32 Score=258.05 Aligned_cols=238 Identities=11% Similarity=0.078 Sum_probs=178.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
++.+||+|+.||.|++||+.++ +....+. .. .|.++.|+|+ +++|+.|++|++|+.......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~------------~~~~~~~--~~-~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDS------------KTITTIT--TP-NPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSS------------SCEEEEE--EE-CCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCC------------cEEEEEe--cC-CceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 7789999999999999999887 4444554 23 5889999998 999999999999998743211
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee-ecCCCceeEEEEcc--CCCceEEEEcCCCeEEEEEc
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILWDA 308 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~ 308 (496)
++......+..+ .+|...|.+++|+| ++ .+|++++.||+|++||+
T Consensus 109 -------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 109 -------------------------------LDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSY 156 (343)
T ss_dssp -------------------------------EETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEES
T ss_pred -------------------------------eecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEEC
Confidence 111122222333 36778999999999 88 79999999999999999
Q ss_pred cCCCccceeee-ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc-eEecc-CCCCEEEEEEcCCCC
Q 010997 309 RVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEG-HSAAVLCVQWSPDKS 385 (496)
Q Consensus 309 ~~~~~~~~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~~~~~-h~~~i~~l~~sp~~~ 385 (496)
++++ ..... ..|...|++++|+| ++.+|++|+.||.|++||+++ +..+ ..+.. |..+|++++|+|++.
T Consensus 157 ~~~~--~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 157 EDDS--QYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS------PDQASSRFPVDEEAKIKEVKFADNGY 227 (343)
T ss_dssp SSSC--EEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSC------TTSCCEECCCCTTSCEEEEEECTTSS
T ss_pred CCCc--EEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC------CCCCccEEeccCCCCEEEEEEeCCCC
Confidence 9887 33333 34566899999999 999999999999999999998 5666 77888 999999999999998
Q ss_pred CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc--eEEecCCCCcEEEEecCCCCCCCCCCeEE
Q 010997 386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWNASDPWTVVSVSDDCDSTGGGGTLQ 463 (496)
Q Consensus 386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~ 463 (496)
+ |++++ |+.|++||++...... .+..+..|...+. +++|+|++.++++.++. |+.|+
T Consensus 228 ~-l~s~~-~~~v~iwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~-------d~~i~ 286 (343)
T 3lrv_A 228 W-MVVEC-DQTVVCFDLRKDVGTL------------AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE-------SNSLT 286 (343)
T ss_dssp E-EEEEE-SSBEEEEETTSSTTCB------------SSCCCBC-----CCEEEEECTTSSEEEEEETT-------TTEEE
T ss_pred E-EEEEe-CCeEEEEEcCCCCcce------------eecccccccccccceEEEECCCCCEEEEecCC-------CCcEE
Confidence 5 56888 5599999998852211 1111223444444 59999998876632221 58999
Q ss_pred EeecCC
Q 010997 464 IWRMSD 469 (496)
Q Consensus 464 iw~~~~ 469 (496)
||++..
T Consensus 287 v~~~~~ 292 (343)
T 3lrv_A 287 IYKFDK 292 (343)
T ss_dssp EEEECT
T ss_pred EEEEcc
Confidence 999963
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-30 Score=249.06 Aligned_cols=293 Identities=13% Similarity=0.064 Sum_probs=218.3
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
+..++.|.|. ...|+.+ +.+..+.||++....+ ........+|.+.|++
T Consensus 13 ~v~~~~~s~~--------~~~l~~~-----~~d~~v~iw~~~~~~~------------------~~~~~~~~~~~~~v~~ 61 (342)
T 1yfq_A 13 YISDIKIIPS--------KSLLLIT-----SWDGSLTVYKFDIQAK------------------NVDLLQSLRYKHPLLC 61 (342)
T ss_dssp CEEEEEEEGG--------GTEEEEE-----ETTSEEEEEEEETTTT------------------EEEEEEEEECSSCEEE
T ss_pred cEEEEEEcCC--------CCEEEEE-----cCCCeEEEEEeCCCCc------------------cccceeeeecCCceEE
Confidence 4457777774 1244444 2567899998753211 1123455689999999
Q ss_pred EEecCCCCc-EEEEEeCCCcEEEEeC-CCCCCccccCCCCCCCCceEEec--CCCCcceeeeecCCCCceEEecCCCcEE
Q 010997 146 IRELPQNTK-IVATHTDSPDVLIWDV-EAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (496)
Q Consensus 146 l~~~p~~~~-~lat~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~l~~--h~~~~v~~l~~~p~~~~l~sg~~Dg~i~ 221 (496)
++|+| +++ +|++|+.||.|++||+ .+.. ...+.+ |.. .|.+++|+| +++|++|+.|+.|+
T Consensus 62 ~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~-------------~~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 62 CNFID-NTDLQIYVGTVQGEILKVDLIGSPS-------------FQALTNNEANL-GICRICKYG-DDKLIAASWDGLIE 125 (342)
T ss_dssp EEEEE-SSSEEEEEEETTSCEEEECSSSSSS-------------EEECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEE
T ss_pred EEECC-CCCcEEEEEcCCCeEEEEEeccCCc-------------eEeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEE
Confidence 99999 788 9999999999999999 7651 256677 877 699999999 99999999999999
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
+||+++....... ....++..+. |...|.+++|+|++ +++++.|+
T Consensus 126 iwd~~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~ 170 (342)
T 1yfq_A 126 VIDPRNYGDGVIA-------------------------------VKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNS 170 (342)
T ss_dssp EECHHHHTTBCEE-------------------------------EEESCSSSSS-SCCCEEEEEECSSE---EEEEESTT
T ss_pred EEccccccccccc-------------------------------ccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCC
Confidence 9998741000000 0001112233 77899999999865 99999999
Q ss_pred eEEEEEccC-CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-------
Q 010997 302 CLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA------- 373 (496)
Q Consensus 302 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~------- 373 (496)
.|++||++. ...........|...|.+++|+|.++.+|++|+.||.|++||++.............+..|..
T Consensus 171 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
T 1yfq_A 171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250 (342)
T ss_dssp EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccc
Confidence 999999998 654344455678899999999984478999999999999999987310001167778887765
Q ss_pred --CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC-CCCcceEEecCCCCcEEEEec
Q 010997 374 --AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 374 --~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~~l~~s~s 450 (496)
.|.+++|+|++.+ |++++.||.|++||+... ..+..+.+| ...|.+++ |++.+ +++++
T Consensus 251 ~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~~~--~~~~~-l~s~s 311 (342)
T 1yfq_A 251 AYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTR---------------KKIKNFAKFNEDSVVKIA--CSDNI-LCLAT 311 (342)
T ss_dssp CCCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSSEEEEEE--ECSSE-EEEEE
T ss_pred ceeEEEEEEcCCCCE-EEEecCCceEEEEcCccH---------------hHhhhhhcccCCCceEec--CCCCe-EEEEe
Confidence 9999999999996 579999999999999874 567778888 99999999 77765 55444
Q ss_pred CCCCCCCCCCe-EEEee
Q 010997 451 DDCDSTGGGGT-LQIWR 466 (496)
Q Consensus 451 ~d~~sgg~Dg~-i~iw~ 466 (496)
. ||+ .+.|.
T Consensus 312 ~-------Dg~~~~~~~ 321 (342)
T 1yfq_A 312 S-------DDTFKTNAA 321 (342)
T ss_dssp E-------CTHHHHCSS
T ss_pred c-------CCccccccc
Confidence 4 477 44444
No 103
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-32 Score=263.76 Aligned_cols=283 Identities=8% Similarity=0.036 Sum_probs=197.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCC-------cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSP-------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
-.-+|++++|+| ++++||+|+.+. .|++|++.......... ........+.+|.+ .|.+++++ ++.+
T Consensus 13 ~g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~--~~~~~~~~l~~~~~-~v~s~~~~--~~~~ 86 (365)
T 4h5i_A 13 VGYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ--FHILSEFALEDNDD-SPTAIDAS--KGII 86 (365)
T ss_dssp CSSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH--EEEEEEEECCTTSC-CCCEEEEE--TTEE
T ss_pred CCCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee--eeeeeEEEccCCCC-ceEEEEeC--CCEE
Confidence 345799999999 899999997643 59999998763221100 00011234667776 57777664 4444
Q ss_pred EE-----------ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCc
Q 010997 212 LS-----------GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 280 (496)
Q Consensus 212 ~s-----------g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (496)
++ |+.|+.+++|++........... .........+...
T Consensus 87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~ 135 (365)
T 4h5i_A 87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-------------------------------SVDFDASTNADDY 135 (365)
T ss_dssp EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-------------------------------EECSSCCCCTTCC
T ss_pred EEEECCCccEEEEecCCCcEEEEEecCCCceEEEee-------------------------------eeceeecCCcccC
Confidence 44 45688899998865322110000 0000112234556
Q ss_pred eeEEEEccCCCceEE--EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 281 VEDVTFCPSSAQEFC--SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 281 v~~l~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
+.+++|+|+| .+++ +++.|++|+|||+++++ ....+ .|...|.+++|+| ++.+|++++.++ +.+|+..+
T Consensus 136 ~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~--~~~~~-~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~--- 206 (365)
T 4h5i_A 136 TKLVYISREG-TVAAIASSKVPAIMRIIDPSDLT--EKFEI-ETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVT--- 206 (365)
T ss_dssp EEEEEECTTS-SCEEEEESCSSCEEEEEETTTTE--EEEEE-ECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTT---
T ss_pred EEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCc--EEEEe-CCCCceEEEEEcc-CCceEEecccee-EEEEEecc---
Confidence 8899999999 5554 55589999999999877 44444 5888999999999 999999998655 66666665
Q ss_pred CCCCCCc--eEeccCCCCEEEEEEcCCCCCEEEEEeCCC----cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC
Q 010997 359 NGVGSPI--NKFEGHSAAVLCVQWSPDKSSVFGSSAEDG----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 432 (496)
Q Consensus 359 ~~~~~~~--~~~~~h~~~i~~l~~sp~~~~llas~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 432 (496)
+..+ .....|...|.+++|+|++.. +++++.|+ .+++|++..... .......+.+|...
T Consensus 207 ---~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 207 ---GSCIARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNT-----------SVLRSKQVTNRFKG 271 (365)
T ss_dssp ---CCEEEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEE-----------EEEEEEEEESSCSC
T ss_pred ---CcceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeeccccccee-----------cceeeeeecCCCCC
Confidence 3443 334568889999999999985 56777776 588888876311 11234567889999
Q ss_pred cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH-HHhccceEEEeccCC
Q 010997 433 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE-LEKFKAHVISCTSKP 496 (496)
Q Consensus 433 V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~sP 496 (496)
|++++|+|++.+ +| +|+.|++|+|||+. +++++.+ +.+|..+|++|+|||
T Consensus 272 V~~~~~Spdg~~-la-------sgs~D~~V~iwd~~------~~~~~~~~~~gH~~~V~~v~fSp 322 (365)
T 4h5i_A 272 ITSMDVDMKGEL-AV-------LASNDNSIALVKLK------DLSMSKIFKQAHSFAITEVTISP 322 (365)
T ss_dssp EEEEEECTTSCE-EE-------EEETTSCEEEEETT------TTEEEEEETTSSSSCEEEEEECT
T ss_pred eEeEEECCCCCc-eE-------EEcCCCEEEEEECC------CCcEEEEecCcccCCEEEEEECC
Confidence 999999998875 45 44455999999998 6777766 589999999999998
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-31 Score=256.80 Aligned_cols=245 Identities=21% Similarity=0.334 Sum_probs=195.6
Q ss_pred CceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCC
Q 010997 187 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 266 (496)
Q Consensus 187 ~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (496)
+...+.+|.. .|++++|+|++++|++|+.||.|++||+...
T Consensus 3 ~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------------------- 43 (379)
T 3jrp_A 3 MVVIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------------------- 43 (379)
T ss_dssp --CCEEECCC-CEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------------------
T ss_pred ccEEecCCcc-cEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------------------
Confidence 4567899998 7999999999999999999999999998632
Q ss_pred CcCCeeeeecCCCceeEEEEccC--CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEE
Q 010997 267 SVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTG 342 (496)
Q Consensus 267 ~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sg 342 (496)
.......+.+|...|.+++|+++ + .+|++++.||.|++||++++.......+..|...|.+++|+| + +.+|+++
T Consensus 44 ~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ 121 (379)
T 3jrp_A 44 THKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVA 121 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEE
T ss_pred cceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEe
Confidence 11233667889999999999876 6 799999999999999999876445566778999999999999 7 8999999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-------------CCCCEEEEEeCCCcEEEEECCCCCccc
Q 010997 343 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-------------DKSSVFGSSAEDGLLNIWDYEKVGKKV 409 (496)
Q Consensus 343 s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-------------~~~~llas~~~dg~i~iwd~~~~~~~~ 409 (496)
+.||.|++||++... ......+..|...|.+++|+| ++. +|++++.||.|++||++....
T Consensus 122 ~~d~~i~v~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-- 194 (379)
T 3jrp_A 122 SSDGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQ-- 194 (379)
T ss_dssp ETTSEEEEEECCTTS----CCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTT--
T ss_pred cCCCcEEEEecCCCC----ceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCc--
Confidence 999999999999843 245566788999999999999 466 578999999999999986421
Q ss_pred CCCCCCCCCCCeeEEEecCCCCCcceEEecCCC--CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997 410 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 487 (496)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~--~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~ 487 (496)
...+...+.+|...|.+++|+|++ ..++++++. ||.|+||++...... ....+.....|..
T Consensus 195 ---------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~-~~~~~~~~~~~~~ 257 (379)
T 3jrp_A 195 ---------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-------DRTCIIWTQDNEQGP-WKKTLLKEEKFPD 257 (379)
T ss_dssp ---------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-------TSCEEEEEESSTTSC-CEEEESSSSCCSS
T ss_pred ---------ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-------CCEEEEEeCCCCCcc-ceeeeeccccCCC
Confidence 124566788999999999999984 455665554 599999999842100 0122333355888
Q ss_pred eEEEeccCC
Q 010997 488 HVISCTSKP 496 (496)
Q Consensus 488 ~v~~~~~sP 496 (496)
.|.+++|+|
T Consensus 258 ~v~~~~~s~ 266 (379)
T 3jrp_A 258 VLWRASWSL 266 (379)
T ss_dssp CEEEEEECS
T ss_pred cEEEEEEcC
Confidence 999999997
No 105
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-31 Score=263.24 Aligned_cols=276 Identities=19% Similarity=0.308 Sum_probs=216.5
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+|.+.|.+++|+ +++|++|+.||.|++||+.++ +....+.+|.. .|.++.|+ +++|++|
T Consensus 154 ~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~s~ 215 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETG------------ECIHTLYGHTS-TVRCMHLH--EKRVVSG 215 (445)
T ss_dssp ECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEE--TTEEEEE
T ss_pred EEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcC------------cEEEEECCCCC-cEEEEEec--CCEEEEE
Confidence 445899999999996 469999999999999999887 56678889988 68999995 5689999
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceec-----cCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK-----QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+.||+|++||+.++......... ......+. ......++.+.+|+......+..+.+|...|.+++| +
T Consensus 216 s~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 288 (445)
T 2ovr_B 216 SRDATLRVWDIETGQCLHVLMGH-----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D 288 (445)
T ss_dssp ETTSEEEEEESSSCCEEEEEECC-----SSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C
T ss_pred eCCCEEEEEECCCCcEEEEEcCC-----cccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C
Confidence 99999999999876543222110 00111111 111234567788888888888899999999999999 4
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
+ ..+++++.||.|++||+++++ ....+..|...+.++.++ +.+|++|+.||.|++||+++ +.++..+.
T Consensus 289 ~-~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~------~~~~~~~~ 356 (445)
T 2ovr_B 289 G-IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKT------GQCLQTLQ 356 (445)
T ss_dssp S-SEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEEC
T ss_pred C-CEEEEEeCCCeEEEEECCCCC--EEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCC------CcEEEEEc
Confidence 5 789999999999999999987 667778899999999885 56999999999999999998 77888887
Q ss_pred c---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-----cCCCCCcceEEecCC
Q 010997 370 G---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-----AGHRDKVVDFHWNAS 441 (496)
Q Consensus 370 ~---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~~~~~p~ 441 (496)
. |...|.+++|++ . +|++|+.||.|++||+... ..+..+ .+|.+.|.+++|+|+
T Consensus 357 ~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTG---------------EFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp STTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTC---------------CEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred cCCCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCCC---------------ceeeeeeccccCCCCceEEEEEecCC
Confidence 6 889999999964 3 6789999999999999874 233333 478889999999997
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+. ++++++.| |..+..|.|||+..
T Consensus 419 ~~-~la~~~~d---g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 419 KL-VCAVGSRN---GTEETKLLVLDFDV 442 (445)
T ss_dssp EE-EEEEECSS---SSSCCEEEEEECCC
T ss_pred EE-EEEEcccC---CCCccEEEEEECCC
Confidence 65 45555544 11122399999983
No 106
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-31 Score=281.89 Aligned_cols=268 Identities=12% Similarity=0.103 Sum_probs=198.5
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
......+|.+.|++++|+| ++.+||+|+.||.|+||+.... +.... ..|.. .|.+++|+| +++|
T Consensus 9 ~~~~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~------------~~~~~-~~~~~-~V~~l~fsp-g~~L 72 (902)
T 2oaj_A 9 AETNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQV------------EVVIK-LEDRS-AIKEMRFVK-GIYL 72 (902)
T ss_dssp EEEEEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTC------------EEEEE-CSSCC-CEEEEEEET-TTEE
T ss_pred ccccccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCc------------EEEEE-cCCCC-CEEEEEEcC-CCEE
Confidence 3455679999999999999 8899999999999999998765 22222 23554 799999999 8899
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
++++.|++|++||+.++.. +..+. |...|++++|+|++
T Consensus 73 ~S~s~D~~v~lWd~~~~~~----------------------------------------~~~~~-~~~~V~~v~~sp~g- 110 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKV----------------------------------------LTTVF-VPGKITSIDTDASL- 110 (902)
T ss_dssp EEEETTCEEEEEETTTCSE----------------------------------------EEEEE-CSSCEEEEECCTTC-
T ss_pred EEEECcCeEEEEECCCCcE----------------------------------------EEEEc-CCCCEEEEEECCCC-
Confidence 9999999999999975432 23443 66789999999999
Q ss_pred ceEEEEcCCCeEEEEEccCCCccce---------eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVI---------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 362 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 362 (496)
.+|++|+.||.|++||+++...... ....+|...|++++|+|.++.+|++|+.||.| +||+++ +
T Consensus 111 ~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~------~ 183 (902)
T 2oaj_A 111 DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE------N 183 (902)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT------T
T ss_pred CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC------C
Confidence 7999999999999999987652100 22357899999999999446899999999999 999998 6
Q ss_pred CCceEeccC------------------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC--CCCCCCCCCC-e
Q 010997 363 SPINKFEGH------------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE--QGPRTTNYPA-G 421 (496)
Q Consensus 363 ~~~~~~~~h------------------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~-~ 421 (496)
.++..+..| ...|.+++|+|++. +||+|+.||.|++||++....... ........+. .
T Consensus 184 ~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~ 262 (902)
T 2oaj_A 184 EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD 262 (902)
T ss_dssp EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence 667777655 57899999999998 578999999999999987421110 0000000000 0
Q ss_pred eEEEecCCCCCcceEEec----CCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 422 LFFQHAGHRDKVVDFHWN----ASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 422 ~~~~~~~h~~~V~~~~~~----p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
.......|...|++++|+ |++..++++++.| .+...+.+++|++
T Consensus 263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~--~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI--SRGDNQSLTMIDL 310 (902)
T ss_dssp CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS--TTSSCCCEEEEEE
T ss_pred CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC--CCCCCceEEEEec
Confidence 000000245689999995 4455778877655 2222358999985
No 107
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=4.2e-31 Score=252.01 Aligned_cols=236 Identities=25% Similarity=0.399 Sum_probs=193.4
Q ss_pred CCceEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997 186 RPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (496)
....+|+||.+ .|++|+|+|+ +++|+||+.||+|+|||+.+....
T Consensus 29 ~l~~tL~GH~~-~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------------------------------- 74 (340)
T 4aow_A 29 TLRGTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--------------------------------- 74 (340)
T ss_dssp EEEEEECCCSS-CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred EEEEEECCccC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence 34457999998 7999999998 579999999999999999754321
Q ss_pred CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
...+...+.+|...|.+++|+|++ .+|++++.|+.|++|+..... .......+...+..+.+++ .+.+|++|+.
T Consensus 75 --~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~ 148 (340)
T 4aow_A 75 --YGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSVAFSS-DNRQIVSGSR 148 (340)
T ss_dssp --SEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT-TSSCEEEEET
T ss_pred --cceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccc--eeeeecCCCCceeEEEEee-cCccceeecC
Confidence 122346788999999999999998 799999999999999998876 4555667888999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC-CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (496)
|+.+++||+... ........+|...|..++|++++. .++++++.|+.|++||+... .++
T Consensus 149 d~~~~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------------~~~ 208 (340)
T 4aow_A 149 DKTIKLWNTLGV-----CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------------KLK 208 (340)
T ss_dssp TSCEEEECTTSC-----EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------------EEE
T ss_pred CCeEEEEEeCCC-----ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------------cee
Confidence 999999998862 133445678999999999998764 36789999999999999875 567
Q ss_pred EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
..+.+|...|++++|+|++.+++ +|+.||.|+|||+. ..+.+..+.. ...|.+++|+|
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~--------s~s~Dg~i~iwd~~------~~~~~~~~~~-~~~v~~~~~~~ 266 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCA--------SGGKDGQAMLWDLN------EGKHLYTLDG-GDIINALCFSP 266 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEE--------EEETTCEEEEEETT------TTEEEEEEEC-SSCEEEEEECS
T ss_pred eEecCCCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEec------cCceeeeecC-CceEEeeecCC
Confidence 77889999999999999887654 44556999999998 4555555553 45788888886
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=1e-31 Score=261.78 Aligned_cols=252 Identities=14% Similarity=0.138 Sum_probs=171.7
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--------CCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--------TEP 209 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--------~~~ 209 (496)
.|.+.+....+.+ ++.+||+|+.|++|+|||+....... ..+...+.||.+ .|++++|+| +++
T Consensus 87 ~~~~~~~~~~~~~-~~~~las~~~d~~v~lw~~~~~~~~~-------~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~ 157 (393)
T 4gq1_A 87 LHDGDGNVNSSPV-YSLFLACVCQDNTVRLIITKNETIIT-------QHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQ 157 (393)
T ss_dssp ----------CCE-EEEEEEEEETTSCEEEEEEETTEEEE-------EEEECTTTSCSS-CEEEEEEEEEECTTCSEEEE
T ss_pred ccCCCcceeecCC-CCCEEEEEeCCCcEEEEECCCCccce-------eeeecccCCCCC-ceEEEEEccccccccCCCCC
Confidence 4444444444444 77899999999999999998762111 022335678998 799999998 788
Q ss_pred ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+|+||+.|++|+|||+.+.. +...+..|...|.+++|+|+
T Consensus 158 ~las~s~D~tv~~Wd~~~~~----------------------------------------~~~~~~~~~~~v~~v~~~p~ 197 (393)
T 4gq1_A 158 VIASVGDDCTLIIWRLTDEG----------------------------------------PILAGYPLSSPGISVQFRPS 197 (393)
T ss_dssp EEEEEETTSEEEEEEEETTE----------------------------------------EEEEEEECSSCEEEEEEETT
T ss_pred EEEEEECCCeEEEEECCCCc----------------------------------------eeeeecCCCCCcEEEEECCC
Confidence 99999999999999997532 22556678899999999999
Q ss_pred CCceEEEEcCCCeEEEEEccCCCccc-----------------------eeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997 290 SAQEFCSVGDDSCLILWDARVGTSPV-----------------------IKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg 346 (496)
+..+|++++.|++|++||+++++... .....+|...+.++.|++.++..|++++.|+
T Consensus 198 ~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~ 277 (393)
T 4gq1_A 198 NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG 277 (393)
T ss_dssp EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS
T ss_pred CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC
Confidence 86789999999999999998765211 0112367788999999744899999999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEE------------------EcC-CCCCEEEEEeCCCcEEEEECCCCCc
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ------------------WSP-DKSSVFGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~------------------~sp-~~~~llas~~~dg~i~iwd~~~~~~ 407 (496)
++++||+.. +.....+..|...+..+. |+| .+..++++|+.||.|+|||+...
T Consensus 278 ~i~vwd~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-- 349 (393)
T 4gq1_A 278 AWLRWNLFA------NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-- 349 (393)
T ss_dssp EEEEEEC-------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT--
T ss_pred CEEEEECcc------CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC--
Confidence 999999987 444444444444333333 333 34446678889999999999874
Q ss_pred ccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.......+|...|.+++|+|+|.+| |++++ +.+.+|++.
T Consensus 350 -------------~~~~~~~~~~~~V~svafspdG~~L-A~as~--------~Gv~lvrL~ 388 (393)
T 4gq1_A 350 -------------DSNSIPIQLGMPIVDFCWHQDGSHL-AIATE--------GSVLLTRLM 388 (393)
T ss_dssp -------------TCCEEEEECSSCEEEEEECTTSSEE-EEEES--------SEEEEEEEG
T ss_pred -------------cEEEEecCCCCcEEEEEEcCCCCEE-EEEeC--------CCeEEEEEe
Confidence 2333456788899999999988764 55554 457777765
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-31 Score=261.29 Aligned_cols=246 Identities=12% Similarity=0.096 Sum_probs=188.0
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
.-...|.+++|+| ||+++||++.|++|+ |.... ..+.+|.. .|++++|+|+| .+
T Consensus 13 ~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~---------------~~l~gh~~-~v~~V~FsPdg-------~~ 66 (588)
T 2j04_A 13 EFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYA---------------KDINCNSK-NLFHVKEFPLE-------FE 66 (588)
T ss_dssp CCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCC---------------SCCSSBGG-GTEEEEEECCC-------CC
T ss_pred HhhccEEEEEECC-CCCEEEEEcCCceee--ccccc---------------ceecCCCc-cEEEEEECCCC-------Cc
Confidence 4457899999999 999999999999999 64333 23368988 69999999998 46
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
+.+.+|+.+.... ..+ .|...|.+++|+|+| ..|+++
T Consensus 67 ~~~~~~~~~~~~~-----------------------------------------~~~-~~~~~V~~vawSPdG-~~LAs~ 103 (588)
T 2j04_A 67 NKLDFELAQQNGL-----------------------------------------LNS-QPVCYPRVCKPSPID-DWMAVL 103 (588)
T ss_dssp CTTTTSCCCSSCS-----------------------------------------STT-SCSCCEEEEEECSSS-SCEEEE
T ss_pred ceEEEEeCCCceE-----------------------------------------eec-CCCCcEEEEEECCCC-CEEEEE
Confidence 6666665432110 111 347889999999999 789999
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCC-----CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC-------Cc
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDA-----DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS-------PI 365 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-------~~ 365 (496)
+.||.|++||... ....+. |.. .|.+++||| ++++||+|+.||+|+|||+.. +. .+
T Consensus 104 s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~------~~l~~~~~i~l 171 (588)
T 2j04_A 104 SNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRK------NSENTPEFYFE 171 (588)
T ss_dssp ETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCC------CTTTCCCCEEE
T ss_pred eCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCC------Cccccccceee
Confidence 9999999999533 344444 554 599999999 999999999999999999987 33 25
Q ss_pred eEe----ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-cCCCCCcceEEecC
Q 010997 366 NKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHRDKVVDFHWNA 440 (496)
Q Consensus 366 ~~~----~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p 440 (496)
.++ .+|...|.+++|+|+| +++++.|+.|++||+..... ......+ .+|...|.+++|+
T Consensus 172 ~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~------------~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 172 SSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSH------------QPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp EEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSS------------CCCEEEEECCCSSCCCCEEEE-
T ss_pred eeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcc------------ccceeeecccccCcEEEEEEE-
Confidence 666 6788899999999998 45788899999999987411 1122334 4788999999999
Q ss_pred CCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc--CC
Q 010997 441 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS--KP 496 (496)
Q Consensus 441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~--sP 496 (496)
+. .+|+++ |++|++|++.+ ++......+|.+.|.+++| +|
T Consensus 236 -g~-~LASa~--------~~tIkLWd~~~------~~~~~~~~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 236 -DY-KVVLTC--------PGYVHKIDLKN------YSISSLKTGSLENFHIIPLNHEK 277 (588)
T ss_dssp -TT-EEEEEC--------SSEEEEEETTT------TEEEEEECSCCSCCCEEEETTCS
T ss_pred -CC-EEEEEe--------CCeEEEEECCC------CeEEEEEcCCCceEEEEEeeeCC
Confidence 44 555443 38999999983 3332222279999999998 76
No 110
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=259.94 Aligned_cols=278 Identities=19% Similarity=0.305 Sum_probs=206.2
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEEecCCCcEEEEecCCccccccCCccccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
++.+++|++... +....+.+|.+ .|++++|+| ++++|++|+.||.|++||+.+.............
T Consensus 22 ~~~~~v~~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 88 (408)
T 4a11_B 22 ESTRRVLGLELN------------KDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC 88 (408)
T ss_dssp HHHHHHHTEEEC------------TTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE
T ss_pred cCcceeeccccC------------cceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc
Confidence 446777777666 55667888988 799999999 9999999999999999999865432211100000
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (496)
........+|...|.+++|+|++..+|++++.||.|++||++++. ....+
T Consensus 89 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~- 138 (408)
T 4a11_B 89 ---------------------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVF- 138 (408)
T ss_dssp ---------------------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEE-
T ss_pred ---------------------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceec-
Confidence 000011235899999999999655899999999999999999876 34444
Q ss_pred cCCCCeEEEEecCC--CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 321 AHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 321 ~~~~~v~~i~~sp~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
.+...+.++.|+|. ++.++++|+.||.|++||+++ +..+..+..|...|.+++|+|++.++|++++.||.|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 47889999999984 234999999999999999998 7888999999999999999999998888999999999
Q ss_pred EEECCCCCcccCCCCC-CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC----
Q 010997 399 IWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR---- 473 (496)
Q Consensus 399 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~---- 473 (496)
+||++........... .............+|...|.+++|+|++.+++ +++.||.|++||+......
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL--------TVGTDNRMRLWNSSNGENTLVNY 284 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTTCCBCCCCC
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE--------EecCCCeEEEEECCCCccceecc
Confidence 9999875322111100 00011111222367889999999999887655 4444589999998753210
Q ss_pred -------------------------------------CchHHHHHHHhccceEEEeccCC
Q 010997 474 -------------------------------------PQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 474 -------------------------------------~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
..++.+..+.+|.+.|.+++|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 23455667788999999999987
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.9e-30 Score=247.73 Aligned_cols=242 Identities=14% Similarity=0.258 Sum_probs=193.1
Q ss_pred eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997 189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
..+.+|.+ .|++++|+|++++|++|+.||.|++||+.+... ..
T Consensus 5 ~~~~gH~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------~~ 47 (351)
T 3f3f_A 5 PFDSGHDD-LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------------------NW 47 (351)
T ss_dssp CEECCCSS-CEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------------------CE
T ss_pred ccCccccc-ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------------------cc
Confidence 46789988 799999999999999999999999999975321 11
Q ss_pred CCeeeeecCCCceeEEEEccC--CCceEEEEcCCCeEEEEEccCCCc-------cceeeeccCCCCeEEEEecCCC--Cc
Q 010997 269 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTS-------PVIKVEKAHDADLHCVDWNPLD--DN 337 (496)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~i~~sp~~--~~ 337 (496)
.....+.+|...|.+++|+|. + .+|++++.||.|++||++.+.. .....+..|...|.+++|+| + +.
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 125 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGL 125 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCS
T ss_pred eecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCc
Confidence 234667889999999999994 5 7999999999999999988642 23556678999999999999 7 99
Q ss_pred EEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-------------cCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEE
Q 010997 338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFE-------------GHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd 401 (496)
+|++++.||.|++||+++ +..+..+. .|...+.+++|+|+ +. +|++++.|+.+.+|+
T Consensus 126 ~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~ 198 (351)
T 3f3f_A 126 KLACLGNDGILRLYDALE------PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQR 198 (351)
T ss_dssp EEEEEETTCEEEEEECSS------TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEE
T ss_pred EEEEecCCCcEEEecCCC------hHHhccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEc
Confidence 999999999999999998 33333322 68889999999997 55 678999999998887
Q ss_pred CCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC---cEEEEecCCCCCCCCCCeEEEeecCCCCcC-----
Q 010997 402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLIYR----- 473 (496)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~---~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~----- 473 (496)
.... ....+..+.+|...|++++|+|++. .++++++. ||.|++||+......
T Consensus 199 ~~~~-------------~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 199 GKDG-------------KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK-------DGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp CTTS-------------CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET-------TSCEEEEEEEECC-------
T ss_pred cCCC-------------ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC-------CCeEEEEeCCCCcCccccCC
Confidence 7652 2245777889999999999999873 46665555 599999999742100
Q ss_pred -----------------------------------CchHHHHHHHhccceEEEeccCC
Q 010997 474 -----------------------------------PQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 474 -----------------------------------~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
...+.+..+.+|.+.|.+++|+|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp --------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 01245556678999999999997
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=251.31 Aligned_cols=256 Identities=13% Similarity=0.077 Sum_probs=200.1
Q ss_pred ecCCCceeEEEecCCCCcE-EEEEeCCCcEEEEeCC--CCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCCCCce
Q 010997 137 IIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~-lat~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~~~~l 211 (496)
.+|.+.|++++|+| ++++ +|+|+.||.|+|||+. ++ .....+. .|.. .|.+++|+|++++|
T Consensus 99 ~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~~~~-~v~~~~~sp~~~~l 164 (450)
T 2vdu_B 99 PPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSK------------NVLKLRKRFCFSK-RPNAISIAEDDTTV 164 (450)
T ss_dssp -CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSS------------SCEEEEEEEECSS-CEEEEEECTTSSEE
T ss_pred CccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCC------------ceeeeeecccCCC-CceEEEEcCCCCEE
Confidence 36888999999999 6666 4999999999999998 55 4455555 4555 68999999999999
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS-- 289 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-- 289 (496)
++|+.||.|++|++.+..... .....+.+|...|.+++|+|+
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~~------------------------------------~~~~~~~~h~~~v~~~~~sp~~~ 208 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEEK------------------------------------FTQEPILGHVSMLTDVHLIKDSD 208 (450)
T ss_dssp EEEETTSEEEEEETTSCCCSS------------------------------------CCCCCSEECSSCEEEEEEEECTT
T ss_pred EEEeCCCcEEEEecCCccccc------------------------------------ccceeeecccCceEEEEEcCCCC
Confidence 999999999999987543210 022456789999999999999
Q ss_pred -CCceEEEEcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 290 -SAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 290 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
+ .+|++|+.|+.|++||++++. .... ..+|...|.+++|+ ++.+|++|+.|+.|++||+++ +.++..
T Consensus 209 ~~-~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~------~~~~~~ 277 (450)
T 2vdu_B 209 GH-QFIITSDRDEHIKISHYPQCF--IVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT------GKNLST 277 (450)
T ss_dssp SC-EEEEEEETTSCEEEEEESCTT--CEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT------CCEEEE
T ss_pred CC-cEEEEEcCCCcEEEEECCCCc--eeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC------CcEeee
Confidence 6 799999999999999999877 3444 55899999999999 799999999999999999998 666666
Q ss_pred ecc-------------------------CCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEEC--CCCCcccCCCCCCCCCC
Q 010997 368 FEG-------------------------HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDY--EKVGKKVEQGPRTTNYP 419 (496)
Q Consensus 368 ~~~-------------------------h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~ 419 (496)
+.. ....|.+++|+|++.+++ +++ .|+.|+||++ ... ..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~~d~~i~iw~~~~~~~------------~~ 344 (450)
T 2vdu_B 278 FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA-FFVEATKCIIILEMSEKQK------------GD 344 (450)
T ss_dssp EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE-EEETTCSEEEEEEECSSST------------TC
T ss_pred ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE-EEECCCCeEEEEEeccCCC------------Cc
Confidence 652 346799999999999655 555 8999999999 332 11
Q ss_pred CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
...+..+.+| ..|.+++|+|+ ..+++..+.+ ..++.++.|.||.+..
T Consensus 345 l~~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~-~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 345 LALKQIITFP-YNVISLSAHND-EFQVTLDNKE-SSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEEEECS-SCEEEEEEETT-EEEEEECCTT-CCSSCCCSEEEEEEET
T ss_pred eeeccEeccC-CceEEEEecCC-cEEEEEeccc-CCCCCCcceEEEEEEc
Confidence 2455666777 78999999994 4344333332 1234578899998763
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=4.9e-29 Score=240.06 Aligned_cols=275 Identities=14% Similarity=0.166 Sum_probs=206.2
Q ss_pred CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (496)
Q Consensus 66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (496)
+..++.|.|.-. ....|+.| +.+..++||++.... ........+|.+.|++
T Consensus 41 ~v~~~~~~~~~~-----~g~~l~~~-----~~dg~i~iw~~~~~~-------------------~~~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 41 SIGCLSFSPPTL-----PGNFLIAG-----SWANDVRCWEVQDSG-------------------QTIPKAQQMHTGPVLD 91 (368)
T ss_dssp CEEEEEECCTTS-----SSEEEEEE-----ETTSEEEEEEECTTS-------------------CEEEEEEEECSSCEEE
T ss_pred ceEEEEEcCCCC-----CceEEEEE-----CCCCcEEEEEcCCCC-------------------ceeEEEeccccCCEEE
Confidence 566788877520 01344444 356789999874210 1112345679999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeee--cCCCCceEEecCCCcEEEE
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM--CPTEPYVLSGGKDKSVVLW 223 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~--~p~~~~l~sg~~Dg~i~iw 223 (496)
++|+| ++++|++++.||.|++||+.+. +. ..+.+|.. .|.+++| +|++.+|++|+.||.|++|
T Consensus 92 ~~~~~-~~~~l~s~~~dg~v~iwd~~~~------------~~-~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 92 VCWSD-DGSKVFTASCDKTAKMWDLSSN------------QA-IQIAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTT------------EE-EEEEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred EEECc-CCCEEEEEcCCCcEEEEEcCCC------------Cc-eeeccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 99999 8899999999999999999877 22 23567877 6999999 8999999999999999999
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeE
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 303 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 303 (496)
|++++.. +..+..+. .+.++.+.+ ..+++++.++.+
T Consensus 157 d~~~~~~----------------------------------------~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i 192 (368)
T 3mmy_A 157 DTRSSNP----------------------------------------MMVLQLPE-RCYCADVIY---PMAVVATAERGL 192 (368)
T ss_dssp CSSCSSC----------------------------------------SEEEECSS-CEEEEEEET---TEEEEEEGGGCE
T ss_pred ECCCCcE----------------------------------------EEEEecCC-CceEEEecC---CeeEEEeCCCcE
Confidence 9975432 24444443 566666664 468888899999
Q ss_pred EEEEccCCCccceeeeccCCCCeEEEEecCCCCc----EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC------
Q 010997 304 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN----LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA------ 373 (496)
Q Consensus 304 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~----~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~------ 373 (496)
++||++............+...+.++++.+ +.. .+++|+.||.|++||++.... ...+..+..|..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNP---AKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCH---HHHSEEEECSEEC----C
T ss_pred EEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCc---cccceeeeeeeccccccc
Confidence 999998876433333334555666676655 333 399999999999999997320 045677777766
Q ss_pred ------CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 374 ------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 374 ------~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
.|.+++|+|++.+ |++++.||.|++||+... .++..+.+|...|.+++|+|++.++++
T Consensus 269 ~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDAR---------------TKLKTSEQLDQPISACCFNHNGNIFAY 332 (368)
T ss_dssp CCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred ccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCC---------------cEEEEecCCCCCceEEEECCCCCeEEE
Confidence 7999999999986 579999999999999874 567778899999999999999887663
Q ss_pred E
Q 010997 448 S 448 (496)
Q Consensus 448 s 448 (496)
+
T Consensus 333 ~ 333 (368)
T 3mmy_A 333 A 333 (368)
T ss_dssp E
T ss_pred E
Confidence 3
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-30 Score=251.63 Aligned_cols=254 Identities=9% Similarity=0.063 Sum_probs=187.4
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
+|++.|++++|+| ++ .++.+.+|+.+.. ....+ +|.. .|.+++|+|+|.+||+++.|
T Consensus 50 gh~~~v~~V~FsP-dg-------~~~~~~~~~~~~~-------------~~~~~-~~~~-~V~~vawSPdG~~LAs~s~d 106 (588)
T 2j04_A 50 CNSKNLFHVKEFP-LE-------FENKLDFELAQQN-------------GLLNS-QPVC-YPRVCKPSPIDDWMAVLSNN 106 (588)
T ss_dssp SBGGGTEEEEEEC-CC-------CCCTTTTSCCCSS-------------CSSTT-SCSC-CEEEEEECSSSSCEEEEETT
T ss_pred CCCccEEEEEECC-CC-------CcceEEEEeCCCc-------------eEeec-CCCC-cEEEEEECCCCCEEEEEeCC
Confidence 7999999999999 65 4555555554322 11111 4444 79999999999999999999
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC-----ceeEEEEccCCCc
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-----TVEDVTFCPSSAQ 292 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~ 292 (496)
|.|++||.+. .+..+. |.. .|.+++|+|+| .
T Consensus 107 g~V~iwd~~~------------------------------------------~l~~l~-~~~~~~~~sv~svafSPDG-~ 142 (588)
T 2j04_A 107 GNVSVFKDNK------------------------------------------MLTNLD-SKGNLSSRTYHCFEWNPIE-S 142 (588)
T ss_dssp SCEEEEETTE------------------------------------------EEEECC-CSSCSTTTCEEEEEECSSS-S
T ss_pred CcEEEEeCCc------------------------------------------eeeecc-CCCccccccEEEEEEcCCC-C
Confidence 9999999643 113334 444 59999999999 8
Q ss_pred eEEEEcCCCeEEEEEccCCCc--c---ceeee----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997 293 EFCSVGDDSCLILWDARVGTS--P---VIKVE----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~--~---~~~~~----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 363 (496)
+|++|+.||+|+|||+..+.. + .+..+ .+|...|.+++|+| ++ +++++.|+.|++||+.. ..
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~------~~ 213 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSA------SS 213 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCS------SS
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCC------Cc
Confidence 999999999999999988752 1 13443 56888999999999 77 88888999999999987 33
Q ss_pred ---CceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe-
Q 010997 364 ---PINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW- 438 (496)
Q Consensus 364 ---~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~- 438 (496)
...++ .+|...|.+++|+ +. .+|+++ ++.|++||+... .......||...|++++|
T Consensus 214 ~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~---------------~~~~~~~gh~~~V~~va~~ 274 (588)
T 2j04_A 214 HQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY---------------SISSLKTGSLENFHIIPLN 274 (588)
T ss_dssp SCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT---------------EEEEEECSCCSCCCEEEET
T ss_pred cccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC---------------eEEEEEcCCCceEEEEEee
Confidence 23556 4788999999999 45 567887 799999999874 332223389999999999
Q ss_pred -cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH-----------------HHhccceEEEeccCC
Q 010997 439 -NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE-----------------LEKFKAHVISCTSKP 496 (496)
Q Consensus 439 -~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~-----------------l~~h~~~v~~~~~sP 496 (496)
+|++.. +++ ++.||+ ++|......+.+.+..+.. +++ ...|.+++|||
T Consensus 275 ~s~d~~~-La~-------a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SP 340 (588)
T 2j04_A 275 HEKESTI-LLM-------SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSP 340 (588)
T ss_dssp TCSSCEE-EEE-------CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECT
T ss_pred eCCCCCE-EEE-------EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECC
Confidence 997754 554 444599 9998754333333322222 122 34589999998
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=7.5e-29 Score=238.11 Aligned_cols=290 Identities=13% Similarity=0.093 Sum_probs=192.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EE
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LS 213 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~s 213 (496)
....|.+.|++++|+| ++++||+|+.+| ++|||+.+. ..... .+.. .+..+++.++++++ ++
T Consensus 14 ~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~------------~~~~~--~~~~-~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPV------------AHIMS--QEMR-HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp -----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTE------------EEEEE--EECS-CCCEEEECTTSSEEEEE
T ss_pred ccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCc------------ceeee--eecC-CeEEEEEcCCCCEEEEE
Confidence 3457999999999999 889999998875 789998765 22222 2222 36788888888876 57
Q ss_pred ecCCCcEEEEecCCccccccCCccccc---cCCCCCceeccCCCCCCCCCCCCCCCCc-CCeeeeecCCCceeEEEEccC
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~ 289 (496)
|+.|++|++||+.++............ ...... ... ...+.+.+|+.... +.+..+.. +...+++++
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~-~~~----~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF-IVV----SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE-EEE----EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE-EEE----EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence 888999999999877543322110000 000000 000 12344556666555 44444444 444556666
Q ss_pred CCceEEE--EcCCCeEEEEEccCCCc--------------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc-EEEEe
Q 010997 290 SAQEFCS--VGDDSCLILWDARVGTS--------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFD 352 (496)
Q Consensus 290 ~~~~l~s--~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~-i~iwd 352 (496)
. +++. |+.||.|++||++++.. +....+.+|...|++++|+| ++.+||+|+.||+ |++||
T Consensus 148 ~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 148 G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp T--EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEE
T ss_pred c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEE
Confidence 2 4444 68999999999987541 11566789999999999999 9999999999998 99999
Q ss_pred CCCCCCCCCCCCceEec-c-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCC--C------CCCCCCCee
Q 010997 353 RRNLTSNGVGSPINKFE-G-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG--P------RTTNYPAGL 422 (496)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-~-h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~--~------~~~~~~~~~ 422 (496)
+++ +.++..+. + |...|.+++|+|++.+ |++++.|+.|+|||+.......... . .........
T Consensus 225 ~~~------~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 225 TED------GVLVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp TTT------CCEEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred CCC------CcEEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 998 78899998 5 9999999999999984 6799999999999997642111000 0 000000011
Q ss_pred EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 423 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 423 ~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.....++......++|++++..++ +++.||.+++|++.
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~--------~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVV--------VWPHTRMIETFKVV 335 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEE--------EETTTTEEEEEEEE
T ss_pred EEeccCCCCCceEEEEeCCCCEEE--------EEeCCCeEEEEEEE
Confidence 111122233457799999887766 44556999999987
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.1e-30 Score=252.58 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=163.1
Q ss_pred eeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (496)
Q Consensus 200 ~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (496)
....+.+++.+|++|+.|++|+|||++.+.... ...+..+.+|.+
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------------------~~~~~~~~gH~~ 137 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------------------QHVLGGKSGHHN 137 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------------------EEEECTTTSCSS
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------------------eeeecccCCCCC
Confidence 334445566789999999999999998653211 112245678999
Q ss_pred ceeEEEEcc--------CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997 280 TVEDVTFCP--------SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (496)
Q Consensus 280 ~v~~l~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw 351 (496)
.|++|+|+| ++ .+|++|+.|++|+|||++++. .......|...|.+++|+|.+..+|++|+.||+|++|
T Consensus 138 ~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~w 214 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIF 214 (393)
T ss_dssp CEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEE
Confidence 999999998 55 799999999999999998876 4555568999999999999444689999999999999
Q ss_pred eCCCCCCCCCC-------------------CCceEeccCCCCEEEEEEc-CCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997 352 DRRNLTSNGVG-------------------SPINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411 (496)
Q Consensus 352 d~~~~~~~~~~-------------------~~~~~~~~h~~~i~~l~~s-p~~~~llas~~~dg~i~iwd~~~~~~~~~~ 411 (496)
|+++....... .......+|...|.++.|+ |++. .+++++.|+.+++||+.........
T Consensus 215 d~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l 293 (393)
T 4gq1_A 215 DWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEI 293 (393)
T ss_dssp ETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC---------
T ss_pred ECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceE
Confidence 99874311000 0011124678889999997 6777 4679999999999999874322111
Q ss_pred CCCCC----CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997 412 GPRTT----NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 487 (496)
Q Consensus 412 ~~~~~----~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~ 487 (496)
..... ............+...+..+.+.+.+..+++++++ ||+|+|||+. .++.+..+.+|..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~-------Dg~V~lwd~~------~~~~~~~~~~~~~ 360 (393)
T 4gq1_A 294 SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ-------HGLIQLINTY------EKDSNSIPIQLGM 360 (393)
T ss_dssp ----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT-------TTEEEEEETT------CTTCCEEEEECSS
T ss_pred eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC-------CCEEEEEECC------CCcEEEEecCCCC
Confidence 11000 00001112223333334444444445556665444 5999999998 5666677788999
Q ss_pred eEEEeccCC
Q 010997 488 HVISCTSKP 496 (496)
Q Consensus 488 ~v~~~~~sP 496 (496)
+|.+|+|||
T Consensus 361 ~V~svafsp 369 (393)
T 4gq1_A 361 PIVDFCWHQ 369 (393)
T ss_dssp CEEEEEECT
T ss_pred cEEEEEEcC
Confidence 999999998
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=7.6e-29 Score=244.81 Aligned_cols=282 Identities=9% Similarity=0.058 Sum_probs=217.6
Q ss_pred ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (496)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l 211 (496)
+....+.+.+.+.+++|+| ++.++++++.++.|++||+.++..... .....+.+|.. .|.+++|+|++.++
T Consensus 114 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~-------~~~~~~~~~~~-~v~~~~~~~~~~~~ 184 (433)
T 3bws_A 114 RFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRL-------SPPEKYKKKLG-FVETISIPEHNELW 184 (433)
T ss_dssp EEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEE-------CCCHHHHTTCC-EEEEEEEGGGTEEE
T ss_pred eEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeee-------cCcccccccCC-ceeEEEEcCCCEEE
Confidence 4455566667788999999 889999999999999999988732110 01113457776 68999999999999
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
++++.|+.|++||++++.. +..+..|...+.+++|+|++.
T Consensus 185 ~s~~~d~~v~~~d~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLAY----------------------------------------KATVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp EEEGGGTEEEEEETTTCCE----------------------------------------EEEEECSSSSEEEEEEETTTT
T ss_pred EEECCCCEEEEEECCCceE----------------------------------------EEEEcCCCCCeeEEEEcCCCC
Confidence 9999999999999875322 355667888999999999995
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc--------CCCcEEEEeCCCCCCCCCCC
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--------ADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--------~dg~i~iwd~~~~~~~~~~~ 363 (496)
.++++++.|+.|++||+++++ ....+. +...+.+++|+| ++.+|++++ .||.|++||+++ +.
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~--~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~ 294 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKL--EIRKTD-KIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDK------EK 294 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEECC-CCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTT------TE
T ss_pred EEEEEecCCCcEEEEECCCCc--EEEEec-CCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCC------Cc
Confidence 555777789999999998876 444443 445699999999 888888887 588999999997 55
Q ss_pred CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443 (496)
Q Consensus 364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~ 443 (496)
.+..+ .|...+.+++|+|+++.++++++.|+.|++||+... ..+..+ .+...+.+++|+|++.
T Consensus 295 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---------------~~~~~~-~~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 295 LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---------------KVQKSI-PVFDKPNTIALSPDGK 357 (433)
T ss_dssp EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---------------EEEEEE-ECSSSEEEEEECTTSS
T ss_pred EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---------------cEEEEe-cCCCCCCeEEEcCCCC
Confidence 55544 466689999999999888888899999999999864 233333 3667799999999988
Q ss_pred cEEEEecCC-------CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 444 WTVVSVSDD-------CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 444 ~l~~s~s~d-------~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.++++...+ .++|+.||.|++||+. +++.+..+.. ...+.+++|+|
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~------~~~~~~~~~~-~~~~~~~~~s~ 410 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT------TDTVKEFWEA-GNQPTGLDVSP 410 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT------TTEEEEEEEC-SSSEEEEEECT
T ss_pred EEEEEecCCCccccccccccccceEEEEEECC------CCcEEEEecC-CCCCceEEEcC
Confidence 777665432 1356678999999998 4555555554 34688999887
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-30 Score=269.91 Aligned_cols=243 Identities=21% Similarity=0.340 Sum_probs=192.5
Q ss_pred eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997 189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
..+.+|.+ .|++++|+|++++|++|+.||+|++||+... ..
T Consensus 3 ~~l~gH~~-~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------------------~~ 43 (753)
T 3jro_A 3 VIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------TH 43 (753)
T ss_dssp -----CCC-CEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------------------EE
T ss_pred eecccCcc-eeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------------------CC
Confidence 46789988 7999999999999999999999999998632 12
Q ss_pred CCeeeeecCCCceeEEEEccC--CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEEcC
Q 010997 269 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA 344 (496)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~ 344 (496)
.....+.+|.+.|.+++|+|+ + .+|++|+.||.|++||++++..........|...|.+++|+| + +.+|++|+.
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~ 121 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASS 121 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEET
T ss_pred ccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeC
Confidence 234677899999999999987 6 799999999999999999876445666778999999999999 7 899999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC-------------CCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD-------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~-------------~~~llas~~~dg~i~iwd~~~~~~~~~~ 411 (496)
||.|++||++... ......+.+|...|.+++|+|. +. +|++|+.||.|++||++....
T Consensus 122 dg~I~vwdl~~~~----~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~---- 192 (753)
T 3jro_A 122 DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQ---- 192 (753)
T ss_dssp TSEEEEEECCSSS----CCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTT----
T ss_pred CCcEEEEEeecCC----CcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcc----
Confidence 9999999999843 2456677889999999999994 66 467999999999999987421
Q ss_pred CCCCCCCCCeeEEEecCCCCCcceEEecCCC--CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceE
Q 010997 412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 489 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~--~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v 489 (496)
...+...+.+|...|++++|+|++ ..++++++. ||.|++||+...... ....+.....|.+.|
T Consensus 193 -------~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-------Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 193 -------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-------DRTCIIWTQDNEQGP-WKKTLLKEEKFPDVL 257 (753)
T ss_dssp -------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-------SSCEEEEEESSSSSC-CBCCBSSSSCCSSCC
T ss_pred -------cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-------CCEEEEecCCCCCCc-ceeEEeccCCCCCce
Confidence 124566778999999999999983 445665544 599999999843110 011333446688899
Q ss_pred EEeccCC
Q 010997 490 ISCTSKP 496 (496)
Q Consensus 490 ~~~~~sP 496 (496)
.+++|+|
T Consensus 258 ~~l~~sp 264 (753)
T 3jro_A 258 WRASWSL 264 (753)
T ss_dssp CCEEECT
T ss_pred EEEEEcC
Confidence 9999987
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.1e-28 Score=222.74 Aligned_cols=260 Identities=12% Similarity=0.095 Sum_probs=173.9
Q ss_pred eeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC------------------------C
Q 010997 143 VNRIRELPQNT--KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------------------------D 196 (496)
Q Consensus 143 V~~l~~~p~~~--~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~------------------------~ 196 (496)
|.++.|-..+. ..+++++. ..|++|+..... +.+..+++.+|. .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 111 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAW---------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI 111 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSS---------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCc---------cceeeEEEeccCceeEEEEEcCcccceeeeeeccccc
Confidence 45555544222 24666665 499999998861 112222333322 1
Q ss_pred CcceeeeecCC----CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC-CCcCCe
Q 010997 197 NAEFALAMCPT----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG-PSVGPR 271 (496)
Q Consensus 197 ~~v~~l~~~p~----~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 271 (496)
..|.+|+++|+ ++++++++.+ +.+|++.+++..... ....+..+.+++. +.++.+
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss------------------~~g~d~~V~~~~~s~dG~~~ 171 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS------------------GTLSDQQVEVMTFAEDGGGK 171 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE------------------SSSTTCEEEEEEECTTSCEE
T ss_pred cceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec------------------ccCCCCcEEEEEECCCCcee
Confidence 25788899999 8888888744 777877554322110 0111223333333 234555
Q ss_pred eeeecCCCceeEEEEcc---CCCceEEEEcCCCeEEEEEccCCCccceeeeccCC---CCeEEEEecCCCCcEE------
Q 010997 272 GIYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLI------ 339 (496)
Q Consensus 272 ~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~i~~sp~~~~~l------ 339 (496)
..+..|...++.++|++ ++ ..|++++.|++|+|||+.+++ .+.++.+|. ..+.+++|+| ++.++
T Consensus 172 ~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~ 247 (356)
T 2w18_A 172 ENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHP 247 (356)
T ss_dssp EEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEE-TTEEEEEEC--
T ss_pred eeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECC-CCCEEEEeccC
Confidence 67788999999999998 55 789999999999999999998 666666543 4678889999 88776
Q ss_pred ------EEEcCCCcEEEEeCCCCCCCCCCCCceEe-----ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997 340 ------LTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (496)
Q Consensus 340 ------~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~ 408 (496)
++|+.|++|++||..+ +..+..+ .+|...+.+..++ +. ++|+++.|++|+|||+.++
T Consensus 248 ~~~w~laSGs~D~tIklWd~~t------gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tG--- 315 (356)
T 2w18_A 248 CAKESESLRSPVFQLIVINPKT------TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLG--- 315 (356)
T ss_dssp ----------CCEEEEEEETTT------TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTC---
T ss_pred CCcceeeccCCCcEEEEEECCC------CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCC---
Confidence 6788999999999988 6665554 4677666655555 54 6789999999999999885
Q ss_pred cCCCCCCCCCCCeeEEEecCCCCCcc-eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 409 VEQGPRTTNYPAGLFFQHAGHRDKVV-DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+++..+.+|...+. .++|+|++.+++ ||+.|++|+|||+.
T Consensus 316 ------------k~l~tL~gH~~~vvs~vafSPDG~~La--------SGS~D~TIklWd~~ 356 (356)
T 2w18_A 316 ------------QCTALLPPVSDQHWSFVKWSGTDSHLL--------AGQKDGNIFVYHYS 356 (356)
T ss_dssp ------------SEEEEECCC--CCCCEEEECSSSSEEE--------EECTTSCEEEEEEC
T ss_pred ------------cEEEEecCCCCCeEEEEEECCCCCEEE--------EEECCCcEEEecCC
Confidence 56777889988766 589999987655 55566999999963
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.3e-27 Score=232.58 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=196.8
Q ss_pred EEecCCCceeEEEecCCCCcE-EEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-
Q 010997 135 KTIIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL- 212 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~-lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~- 212 (496)
..+.+...+.+++|+| ++.+ +++++.|+.|++||+.++ +....+..+. .+.+++|+|++++|+
T Consensus 26 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~------------~~~~~~~~~~--~v~~~~~spdg~~l~~ 90 (391)
T 1l0q_A 26 ATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATN------------NVIATVPAGS--SPQGVAVSPDGKQVYV 90 (391)
T ss_dssp EEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTT------------EEEEEEECSS--SEEEEEECTTSSEEEE
T ss_pred EEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCC------------eEEEEEECCC--CccceEECCCCCEEEE
Confidence 3444556699999999 5554 578889999999999887 4555666665 489999999999775
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+++.|+.|++||+.++.. +..+. +...+.+++|+|++..
T Consensus 91 ~~~~~~~v~v~d~~~~~~----------------------------------------~~~~~-~~~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 91 TNMASSTLSVIDTTSNTV----------------------------------------AGTVK-TGKSPLGLALSPDGKK 129 (391)
T ss_dssp EETTTTEEEEEETTTTEE----------------------------------------EEEEE-CSSSEEEEEECTTSSE
T ss_pred EECCCCEEEEEECCCCeE----------------------------------------EEEEe-CCCCcceEEECCCCCE
Confidence 566789999999976432 13333 3346899999999954
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h 371 (496)
++++++.|+.|++||+++++ ....+.. ...+.+++|+| ++.+| ++++.++.|++||+++ +..+..+. +
T Consensus 130 l~~~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~-~ 198 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKA--VINTVSV-GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVT------NSVIDTVK-V 198 (391)
T ss_dssp EEEEETTTTEEEEEETTTTE--EEEEEEC-CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEE-C
T ss_pred EEEEeCCCCEEEEEECCCCc--EEEEEec-CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CeEEEEEe-c
Confidence 55899999999999998876 4444433 46679999999 77666 7888899999999998 56666655 5
Q ss_pred CCCEEEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 372 SAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
...+.+++|+|++.++++++. .++.|++||+... ..+..+..|. .+.+++|+|++.++++++
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---------------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---------------KITARIPVGP-DPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------------EEEEEEECCS-SEEEEEECTTSSEEEEEE
T ss_pred CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---------------eEEEEEecCC-CccEEEEccCCCEEEEEc
Confidence 668999999999997664444 6899999999874 3444455554 478999999999887766
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccce
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH 488 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~ 488 (496)
+.| +.|++||+. +++.+..+..|..+
T Consensus 263 ~~d-------~~v~v~d~~------~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 263 SFX-------NTVSVIDTA------TNTITATMAVGKNP 288 (391)
T ss_dssp TTT-------TEEEEEETT------TTEEEEEEECSSSE
T ss_pred CCC-------CEEEEEECC------CCcEEEEEECCcCC
Confidence 554 999999998 45666666555544
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-28 Score=233.89 Aligned_cols=243 Identities=10% Similarity=0.058 Sum_probs=172.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecC--CCCceEEecC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCP--TEPYVLSGGK 216 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p--~~~~l~sg~~ 216 (496)
.+.|.++.|+| . +++++.|++|++|+.......... ...+....+. +|.+ .|.+++|+| ++++|++|+.
T Consensus 76 ~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~s~ 147 (343)
T 3lrv_A 76 TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDS---KTNKVLREIEVDSAN-EIIYMYGHNEVNTEYFIWADN 147 (343)
T ss_dssp EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEET---TTCCEEEEEECCCSS-CEEEEECCC---CCEEEEEET
T ss_pred cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeec---CCcceeEEeecCCCC-CEEEEEcCCCCCCCEEEEEeC
Confidence 46788899988 4 999999999999987743110000 0112223333 5555 699999999 9999999999
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee-ecCCCceeEEEEccCCCceEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~ 295 (496)
||+|++||++++... ..+ ..|...|.+++|+|++ .+|+
T Consensus 148 dg~i~~wd~~~~~~~----------------------------------------~~~~~~~~~~i~~~~~~pdg-~~la 186 (343)
T 3lrv_A 148 RGTIGFQSYEDDSQY----------------------------------------IVHSAKSDVEYSSGVLHKDS-LLLA 186 (343)
T ss_dssp TCCEEEEESSSSCEE----------------------------------------EEECCCSSCCCCEEEECTTS-CEEE
T ss_pred CCcEEEEECCCCcEE----------------------------------------EEEecCCCCceEEEEECCCC-CEEE
Confidence 999999999864321 222 2355679999999998 7999
Q ss_pred EEcCCCeEEEEEccCCCccceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---C
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---H 371 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---h 371 (496)
+|+.||.|++||++++... ...+.. |...|++++|+| ++.+|++++ |+.|++||+++ ...+..+.. |
T Consensus 187 sg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~------~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRK------DVGTLAYPTYTIP 257 (343)
T ss_dssp EECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTS------STTCBSSCCCBC-
T ss_pred EEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCC------CCcceeecccccc
Confidence 9999999999999998732 144556 999999999999 999999999 55999999998 444444433 4
Q ss_pred CCCEE--EEEEcCCCCCEEEEEeC-CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC---CCCcE
Q 010997 372 SAAVL--CVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA---SDPWT 445 (496)
Q Consensus 372 ~~~i~--~l~~sp~~~~llas~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p---~~~~l 445 (496)
...+. +++|+|++.+ |++++. |+.|+||++....+. +.. .++..++|.+ +...+
T Consensus 258 ~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~v~~~~~~~~~---------------~~~----~~~~~~~~~~~~~~~~~l 317 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDKKTKN---------------WTK----DEESALCLQSDTADFTDM 317 (343)
T ss_dssp ----CCEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCS---------------EEE----EEEEECCC----CCCCEE
T ss_pred cccccceEEEECCCCCE-EEEecCCCCcEEEEEEcccccc---------------eEe----cCceeEecCcccccccee
Confidence 44444 6999999995 567777 999999999764211 111 3566777877 55554
Q ss_pred EEEecCCCCCCCCCCeEEEeecC
Q 010997 446 VVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 446 ~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+ +++. ||.+.++-..
T Consensus 318 ~-~~~~-------d~~~~~~~~~ 332 (343)
T 3lrv_A 318 D-VVCG-------DGGIAAILKT 332 (343)
T ss_dssp E-EEEE-------TTEEEEEEEC
T ss_pred E-EEec-------CCceEEEEec
Confidence 4 3333 4788877554
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6e-27 Score=227.97 Aligned_cols=250 Identities=13% Similarity=0.135 Sum_probs=194.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecCCcccc
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~ 231 (496)
+.++++++.|+.|++||+.++ +....+.+|.. +.+++|+|++++| ++++.|+.|++||+.++..
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~------------~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~- 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSN------------KVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV- 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-
T ss_pred CEEEEEcCCCCEEEEEECCCC------------eEEEEeecCCC--cceEEECCCCCEEEEECCCCCeEEEEECCCCeE-
Confidence 357889999999999999887 55667777764 7999999999976 6788999999999976432
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (496)
+..+..+. .+.+++|+|++..++++++.++.|++||+.++
T Consensus 67 ---------------------------------------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~ 106 (391)
T 1l0q_A 67 ---------------------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN 106 (391)
T ss_dssp ---------------------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ---------------------------------------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence 23344343 89999999999555677778899999999987
Q ss_pred CccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEE
Q 010997 312 TSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 390 (496)
Q Consensus 312 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas 390 (496)
+ ..... .+...+.+++|+| ++..| ++++.++.|++||+++ ++.+..+..+ ..+.+++|+|++..++++
T Consensus 107 ~--~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 107 T--VAGTV-KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp E--EEEEE-ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred e--EEEEE-eCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEecC-CCcceEEECCCCCEEEEE
Confidence 6 44444 3456789999999 77766 7888899999999998 6777777655 557999999999987788
Q ss_pred EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 391 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
++.|+.|++||+... ...... .+...+.+++|+|++.+++++..+ +.|+.|++||+.
T Consensus 176 ~~~~~~v~~~d~~~~---------------~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-----~~~~~v~~~d~~-- 232 (391)
T 1l0q_A 176 NFDSMSISVIDTVTN---------------SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVD-----KYFNTVSMIDTG-- 232 (391)
T ss_dssp ETTTTEEEEEETTTT---------------EEEEEE-ECSSEEEEEEECTTSSEEEEEEEC-----SSCCEEEEEETT--
T ss_pred eCCCCEEEEEECCCC---------------eEEEEE-ecCCCccceEECCCCCEEEEEecC-----cCCCcEEEEECC--
Confidence 888999999999874 223323 345678999999998887765431 135999999998
Q ss_pred CcCCchHHHHHHHhccceEEEeccCC
Q 010997 471 IYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 471 ~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.++.+..+..|.. +.+++|+|
T Consensus 233 ----~~~~~~~~~~~~~-~~~~~~s~ 253 (391)
T 1l0q_A 233 ----TNKITARIPVGPD-PAGIAVTP 253 (391)
T ss_dssp ----TTEEEEEEECCSS-EEEEEECT
T ss_pred ----CCeEEEEEecCCC-ccEEEEcc
Confidence 4555566666554 67888876
No 123
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.8e-26 Score=226.07 Aligned_cols=268 Identities=11% Similarity=0.073 Sum_probs=198.2
Q ss_pred EEEecCCCceeEEEecCC-------------CCcEEEEEeCC------CcEEEEeCCCCCCccccCCCCCCCCceEEecC
Q 010997 134 HKTIIHPGEVNRIRELPQ-------------NTKIVATHTDS------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGH 194 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~-------------~~~~lat~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h 194 (496)
....+|...+..+++.+. .+..++.++.+ +.|++||+... ....+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------~~~~l~~~ 177 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------NQFVVHRS 177 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-------------SCEEEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-------------CCEEEeCC
Confidence 345678888887777641 13455555443 79999999743 23567778
Q ss_pred CCCcceeeeecCCCCceEEecCCC---cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe
Q 010997 195 QDNAEFALAMCPTEPYVLSGGKDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 271 (496)
Q Consensus 195 ~~~~v~~l~~~p~~~~l~sg~~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (496)
.. .+.+++|+|+|++|++++.|+ .|++||+.++..
T Consensus 178 ~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----------------------------------------- 215 (415)
T 2hqs_A 178 PQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------------------------------- 215 (415)
T ss_dssp SS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----------------------------------------
T ss_pred CC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----------------------------------------
Confidence 76 689999999999999999875 999999976432
Q ss_pred eeeecCCCceeEEEEccCCCceEEEEcCCCe--EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CC--
Q 010997 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN-- 346 (496)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg-- 346 (496)
..+..|...+.+++|+|++..++++++.++. |++||+++++ ...+..|...+.+++|+| ++.+|++++. ++
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRP 291 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSC
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceEECC-CCCEEEEEECCCCCc
Confidence 3456677889999999999444447776655 9999998876 345567888999999999 8998888776 45
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
.|.+||+.. + ....+..+...+.+++|+|+|++|++++.. +..|.+||+... . ..
T Consensus 292 ~i~~~d~~~------~-~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---------------~-~~ 348 (415)
T 2hqs_A 292 QVYKVNING------G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---------------G-VQ 348 (415)
T ss_dssp EEEEEETTS------S-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---------------C-EE
T ss_pred EEEEEECCC------C-CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC---------------C-EE
Confidence 677778876 3 345566677889999999999976544443 258999999874 1 12
Q ss_pred EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.+..|. .+.+++|+|++..++.+..++ ....|++|++. +..+..+.+|.+.|.+++|+|
T Consensus 349 ~l~~~~-~~~~~~~spdg~~l~~~s~~~-----~~~~l~~~d~~-------g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 349 VLSSTF-LDETPSLAPNGTMVIYSSSQG-----MGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp ECCCSS-SCEEEEECTTSSEEEEEEEET-----TEEEEEEEETT-------SCCEEECCCSSSEEEEEEECC
T ss_pred EecCCC-CcCCeEEcCCCCEEEEEEcCC-----CccEEEEEECC-------CCcEEEeeCCCCCCcCCcccc
Confidence 344444 789999999988766544332 01279999987 344567889999999999998
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=4.2e-27 Score=216.69 Aligned_cols=177 Identities=13% Similarity=0.125 Sum_probs=134.5
Q ss_pred CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC---CCCceEEecCCCcEEEEecCCccccccCCcc
Q 010997 161 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLSGGKDKSVVLWSIQDHITSSATDPA 237 (496)
Q Consensus 161 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p---~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~ 237 (496)
.|+.|++|++... .+....+.+|.. .+..++|++ ++.+|++|+.|++|+|||+.+++.
T Consensus 155 ~d~~V~~~~~s~d-----------G~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~------- 215 (356)
T 2w18_A 155 SDQQVEVMTFAED-----------GGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL------- 215 (356)
T ss_dssp TTCEEEEEEECTT-----------SCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-------
T ss_pred CCCcEEEEEECCC-----------CceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-------
Confidence 3778888888542 145567778887 588999999 678999999999999999987643
Q ss_pred ccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC---CceeEEEEccCCCceE------------EEEcCCCe
Q 010997 238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE---DTVEDVTFCPSSAQEF------------CSVGDDSC 302 (496)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l------------~s~~~dg~ 302 (496)
+..+.+|. ..+.+++|+|++ .++ ++|+.|++
T Consensus 216 ---------------------------------l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 216 ---------------------------------LKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp ---------------------------------EEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEE
T ss_pred ---------------------------------EEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcE
Confidence 24555433 367778899988 554 67889999
Q ss_pred EEEEEccCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE-
Q 010997 303 LILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL- 376 (496)
Q Consensus 303 i~iwd~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~- 376 (496)
|++||..++. .+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+ ++++.++.+|...+.
T Consensus 262 IklWd~~tgk--~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~t------Gk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 262 LIVINPKTTL--SVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLL------GQCTALLPPVSDQHWS 330 (356)
T ss_dssp EEEEETTTTE--EEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTT------CSEEEEECCC--CCCC
T ss_pred EEEEECCCCE--EEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCC------CcEEEEecCCCCCeEE
Confidence 9999998876 33322 356555554444 367899999999999999999 899999999987655
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~ 402 (496)
+++|+|+|++ |++|+.|++|+|||+
T Consensus 331 ~vafSPDG~~-LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSH-LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred EEEECCCCCE-EEEEECCCcEEEecC
Confidence 5899999995 679999999999996
No 125
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=2.3e-27 Score=234.52 Aligned_cols=255 Identities=17% Similarity=0.305 Sum_probs=196.2
Q ss_pred cCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCcee-----ccCCCCCCCCCCCCCCCC
Q 010997 193 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII-----KQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 193 ~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 267 (496)
+|.. .|+++.+ ++++|++|+.||.|++||+.++......... ......+ .......++.+.+|+...
T Consensus 131 ~~~~-~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 131 ETSK-GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-----TGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SSCC-CEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCC-----SSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred CCCC-cEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-----CCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 3444 5777777 7899999999999999999876543322211 1111111 111124567888999999
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-ceeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg 346 (496)
...+..+.+|...|.+++|++ ..+++|+.||.|++||++++... ......+|...|.+++| ++.+|++|+.||
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg 276 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDR 276 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTS
T ss_pred CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCC
Confidence 999999999999999999973 58999999999999999987632 12556789999999999 468999999999
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (496)
.|++||+++ +..+..+.+|...|.+++|+ +. ++++|+.||.|++||++.. ..+..+
T Consensus 277 ~i~vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~---------------~~~~~~ 332 (435)
T 1p22_A 277 TIKVWNTST------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVL 332 (435)
T ss_dssp EEEEEETTT------CCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC---------------CEEEEE
T ss_pred eEEEEECCc------CcEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCC---------------CEEEEE
Confidence 999999998 78899999999999999995 34 5789999999999999874 466778
Q ss_pred cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC---CchHHHHHHHhccceEEEeccC
Q 010997 427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR---PQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~---~~~~~~~~l~~h~~~v~~~~~s 495 (496)
.+|...|.+++|+ +. .++++ +.||.|++||+...... .....+..+.+|.++|.+++|.
T Consensus 333 ~~h~~~v~~~~~~--~~-~l~sg-------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 394 (435)
T 1p22_A 333 EGHEELVRCIRFD--NK-RIVSG-------AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 394 (435)
T ss_dssp CCCSSCEEEEECC--SS-EEEEE-------ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC
T ss_pred eCCcCcEEEEEec--CC-EEEEE-------eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC
Confidence 8999999999993 44 45544 44599999999721100 0011567778999999998874
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.2e-25 Score=221.88 Aligned_cols=242 Identities=10% Similarity=0.077 Sum_probs=189.9
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEec
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGG 215 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~ 215 (496)
.+|.+.|++++|+| ++.++++++.|+.|++||+.+. +....+..|.. .+.+++|+|+++++ ++++
T Consensus 166 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 231 (433)
T 3bws_A 166 KKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL------------AYKATVDLTGK-WSKILLYDPIRDLVYCSNW 231 (433)
T ss_dssp HTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC------------CEEEEEECSSS-SEEEEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc------------eEEEEEcCCCC-CeeEEEEcCCCCEEEEEec
Confidence 37899999999988 8899999999999999999877 55667777776 68999999999877 4666
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.|+.|++||+.++... ..+.. ...+.+++|+|++ ..++
T Consensus 232 ~~~~i~~~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~~~~g-~~l~ 269 (433)
T 3bws_A 232 ISEDISVIDRKTKLEI----------------------------------------RKTDK-IGLPRGLLLSKDG-KELY 269 (433)
T ss_dssp TTTEEEEEETTTTEEE----------------------------------------EECCC-CSEEEEEEECTTS-SEEE
T ss_pred CCCcEEEEECCCCcEE----------------------------------------EEecC-CCCceEEEEcCCC-CEEE
Confidence 8999999999754321 22222 3458999999999 5677
Q ss_pred EEc--------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 296 SVG--------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 296 s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
+++ .|+.|++||+++++ .... ..|...+.+++|+| ++. ++++++.|+.|++||+.+ +..+.
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~-~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~------~~~~~ 339 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEK--LIDT-IGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKE------KKVQK 339 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTE--EEEE-EEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTT------TEEEE
T ss_pred EEECCCCccccCCCeEEEEECCCCc--EEee-ccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCC------CcEEE
Confidence 766 58899999998876 3333 35666899999999 664 667789999999999997 66666
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeC--------------CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAE--------------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 432 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~--------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 432 (496)
.+. +...+.+++|+|++..+++++.. ||.|++||+.+. ..+..+.+ ...
T Consensus 340 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------------~~~~~~~~-~~~ 402 (433)
T 3bws_A 340 SIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------------TVKEFWEA-GNQ 402 (433)
T ss_dssp EEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------------EEEEEEEC-SSS
T ss_pred Eec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---------------cEEEEecC-CCC
Confidence 665 67889999999999866544333 579999999874 33444444 457
Q ss_pred cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 433 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 433 V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+.+++|+|++.+++++++. |+.|++|++.
T Consensus 403 ~~~~~~s~dg~~l~~~~~~-------d~~i~v~~~~ 431 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFL-------DHQIRVYRRD 431 (433)
T ss_dssp EEEEEECTTSCEEEEEETT-------TTEEEEEEET
T ss_pred CceEEEcCCCCEEEEEECC-------CCeEEEEEec
Confidence 8999999999887765444 4999999987
No 127
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=2.7e-26 Score=220.26 Aligned_cols=213 Identities=11% Similarity=0.139 Sum_probs=150.0
Q ss_pred CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (496)
.++..+.+|.. .|++++|+|+|++|++|+.|+ +++||+++...
T Consensus 10 ~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~----------------------------------- 52 (355)
T 3vu4_A 10 NPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH----------------------------------- 52 (355)
T ss_dssp ---------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------------------------------
T ss_pred CCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------------------------------
Confidence 44556678877 799999999999999998765 78999875322
Q ss_pred CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC---------
Q 010997 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD--------- 336 (496)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~--------- 336 (496)
.+..+...+..+++.+.+..++++++.|++|++||+++++ .+..+ .+...|.+++|++ +.
T Consensus 53 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~~~~-~~~~~v~~v~~~~-~~~~~~~~~~i 121 (355)
T 3vu4_A 53 -------IMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DVSRI-KVDAPVKDLFLSR-EFIVVSYGDVI 121 (355)
T ss_dssp -------EEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EEEEE-ECSSCEEEEEECS-SEEEEEETTEE
T ss_pred -------eeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EEEEE-ECCCceEEEEEcC-CEEEEEEcCEE
Confidence 1111222477788888774455778888999999998876 44444 3667888888876 21
Q ss_pred --------------------------cEEEE--EcCCCcEEEEeCCCCCCC---------CCCCC-ceEeccCCCCEEEE
Q 010997 337 --------------------------NLILT--GSADNSVRMFDRRNLTSN---------GVGSP-INKFEGHSAAVLCV 378 (496)
Q Consensus 337 --------------------------~~l~s--gs~dg~i~iwd~~~~~~~---------~~~~~-~~~~~~h~~~i~~l 378 (496)
.++++ |+.||.|++||+++.... ....+ +..+.+|...|+++
T Consensus 122 ~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~ 201 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV 201 (355)
T ss_dssp EEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred EEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence 23444 577888888888762100 00012 78899999999999
Q ss_pred EEcCCCCCEEEEEeCCCc-EEEEECCCCCcccCCCCCCCCCCCeeEEEec-C-CCCCcceEEecCCCCcEEEEecCCCCC
Q 010997 379 QWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G-HRDKVVDFHWNASDPWTVVSVSDDCDS 455 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~V~~~~~~p~~~~l~~s~s~d~~s 455 (496)
+|+|++. +||+|+.|++ |+|||+.+. ..+..+. + |...|++++|+|++.+++ +
T Consensus 202 ~~s~~g~-~l~s~s~d~~~v~iwd~~~~---------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~-s------- 257 (355)
T 3vu4_A 202 RLNRKSD-MVATCSQDGTIIRVFKTEDG---------------VLVREFRRGLDRADVVDMKWSTDGSKLA-V------- 257 (355)
T ss_dssp EECTTSS-EEEEEETTCSEEEEEETTTC---------------CEEEEEECTTCCSCEEEEEECTTSCEEE-E-------
T ss_pred EECCCCC-EEEEEeCCCCEEEEEECCCC---------------cEEEEEEcCCCCCcEEEEEECCCCCEEE-E-------
Confidence 9999998 5789999998 999999874 4555565 5 999999999999887654 4
Q ss_pred CCCCCeEEEeecCCC
Q 010997 456 TGGGGTLQIWRMSDL 470 (496)
Q Consensus 456 gg~Dg~i~iw~~~~~ 470 (496)
|+.|++|+|||+...
T Consensus 258 ~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 258 VSDKWTLHVFEIFND 272 (355)
T ss_dssp EETTCEEEEEESSCC
T ss_pred EECCCEEEEEEccCC
Confidence 444599999999753
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.4e-24 Score=212.69 Aligned_cols=263 Identities=11% Similarity=0.043 Sum_probs=194.8
Q ss_pred CCCceeEEEecCCCCcEEEEEe----CCC----cEEEEeC--CCCCCccccCCCCCCCCc--eEEecCCCCcceeeeecC
Q 010997 139 HPGEVNRIRELPQNTKIVATHT----DSP----DVLIWDV--EAQPNRHAVLGATNSRPD--LILTGHQDNAEFALAMCP 206 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~--~~l~~h~~~~v~~l~~~p 206 (496)
+.+.|+..+|.+.+..++++|+ .+| .|+|||+ .++ +.+ ..+.+|.. .+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~ 127 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG------------TVLAQNSYKVNKQ-WLRYAGHTA 127 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT------------CEEEEEEEEECGG-GHHHHHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC------------CEEeeeEEEcChh-HHHHHHHHH
Confidence 4467899999997778888887 467 8999999 776 333 45788877 577777764
Q ss_pred --------------CCCceEEecCC------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCC
Q 010997 207 --------------TEPYVLSGGKD------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 266 (496)
Q Consensus 207 --------------~~~~l~sg~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (496)
.+..++.++.+ +.|++||++...
T Consensus 128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------------------------- 170 (415)
T 2hqs_A 128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------------------------------------- 170 (415)
T ss_dssp HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-------------------------------------
T ss_pred HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-------------------------------------
Confidence 25566666654 799999986321
Q ss_pred CcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC---eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE-EE
Q 010997 267 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TG 342 (496)
Q Consensus 267 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sg 342 (496)
...+.+|...|.+++|+|++ ..|++++.++ .|++||+.+++ . ..+..|...+.+++|+| ++..|+ ++
T Consensus 171 ----~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~--~-~~l~~~~~~~~~~~~sp-dg~~la~~~ 241 (415)
T 2hqs_A 171 ----QFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA--V-RQVASFPRHNGAPAFSP-DGSKLAFAL 241 (415)
T ss_dssp ----CEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC--E-EEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred ----CEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc--E-EEeecCCCcccCEEEcC-CCCEEEEEE
Confidence 25677889999999999999 6888888775 99999999877 2 34557888999999999 888777 67
Q ss_pred cCCCc--EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCC
Q 010997 343 SADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNY 418 (496)
Q Consensus 343 s~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~ 418 (496)
+.++. |++||+.+ +. ...+..|...+.+++|+|+|++|++++..++ .|.+||+....
T Consensus 242 ~~~g~~~i~~~d~~~------~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------------ 302 (415)
T 2hqs_A 242 SKTGSLNLYVMDLAS------GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------------ 302 (415)
T ss_dssp CTTSSCEEEEEETTT------CC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------------
T ss_pred ecCCCceEEEEECCC------CC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------------
Confidence 66665 99999987 33 4677888899999999999997654443355 57777877631
Q ss_pred CCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 419 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 419 ~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
...+..|...+.+++|+|++.+++++..++ .++.|++||+.. ++. ..+..+. .+.+++|+|
T Consensus 303 ----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~-----g~~~i~~~d~~~------~~~-~~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 303 ----PQRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLAT------GGV-QVLSSTF-LDETPSLAP 363 (415)
T ss_dssp ----CEECCCSSSEEEEEEECTTSSEEEEEEECS-----SCEEEEEEETTT------CCE-EECCCSS-SCEEEEECT
T ss_pred ----EEEEecCCCcccCeEECCCCCEEEEEECcC-----CceEEEEEECCC------CCE-EEecCCC-CcCCeEEcC
Confidence 122344566788999999998776655432 146899999983 332 2344443 788888887
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.9e-23 Score=193.12 Aligned_cols=244 Identities=11% Similarity=0.080 Sum_probs=179.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC-CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
..+..|.+.|.+++|+| ++++||+++ ++.|++||+.+ + +......+|....+.+++|+|++++|+
T Consensus 35 ~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~spdg~~l~ 100 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDP------------SPEKVDTGFATICNNDHGISPDGALYA 100 (297)
T ss_dssp EEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCC------------SCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred eeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCC------------CceEeccccccccccceEECCCCCEEE
Confidence 35567899999999999 888888876 78999999988 6 333444556444688999999999999
Q ss_pred Eec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 213 SGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 213 sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+++ .++.+.||.++.... ....+..+ ..+..++|+|++
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~~~~~-~~~~~~~~spdg 140 (297)
T 2ojh_A 101 ISDKVEFGKSAIYLLPSTGG---------------------------------------TPRLMTKN-LPSYWHGWSPDG 140 (297)
T ss_dssp EEECTTTSSCEEEEEETTCC---------------------------------------CCEECCSS-SSEEEEEECTTS
T ss_pred EEEeCCCCcceEEEEECCCC---------------------------------------ceEEeecC-CCccceEECCCC
Confidence 988 445677776542110 01222222 248889999999
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
..++++++.++.++||++..... ....+..+...+.+++|+| ++.+|++++ .++.++||++... ...+..+.
T Consensus 141 ~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~-----~~~~~~~~ 213 (297)
T 2ojh_A 141 KSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD-----GSSVERIT 213 (297)
T ss_dssp SEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT-----SSCEEECC
T ss_pred CEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC-----CCCcEEEe
Confidence 54555888999999999754332 2345557788999999999 888777655 5899999998732 35677788
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCC-----------CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAED-----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
.|...+..++|+|++.+|+ +++.+ +.|.+||+... ....+....+|...+..++|
T Consensus 214 ~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~~-------------~~~~~~~~~~~~~~~~~~~~ 279 (297)
T 2ojh_A 214 DSAYGDWFPHPSPSGDKVV-FVSYDADVFDHPRDLDVRVQLMDMDGG-------------NVETLFDLFGGQGTMNSPNW 279 (297)
T ss_dssp CCSEEEEEEEECTTSSEEE-EEEEETTCCSCCSSEEEEEEEEETTSC-------------SCEEEEEEEESTTTSCSCCB
T ss_pred cCCcccCCeEECCCCCEEE-EEEcCCCCCcccccCceEEEEEecCCC-------------CceeeeccCCCCcccccceE
Confidence 8888999999999999754 55444 56999999873 22345556678889999999
Q ss_pred cCCCCcEEEEecCC
Q 010997 439 NASDPWTVVSVSDD 452 (496)
Q Consensus 439 ~p~~~~l~~s~s~d 452 (496)
+|++..+++++.++
T Consensus 280 spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 280 SPDGDEFAYVRYFP 293 (297)
T ss_dssp CTTSSEEEEEEECC
T ss_pred CCCCCEEEEEEecc
Confidence 99998776655443
No 130
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2.4e-22 Score=192.13 Aligned_cols=301 Identities=11% Similarity=0.157 Sum_probs=198.2
Q ss_pred eEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeC--
Q 010997 84 RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD-- 161 (496)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~-- 161 (496)
.+++|+|+++.+ ....+++|.++... ..+.......+...+..++|+| ++++++++..
T Consensus 2 ~~~~~vg~y~~~-~~~~i~v~~~d~~t------------------g~~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~ 61 (347)
T 3hfq_A 2 QERILFGTYTKK-TSQGIYQGTLDTTA------------------KTLTNDGLLAATQNPTYLALSA-KDCLYSVDKEDD 61 (347)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEETTT------------------TEEEEEEEEEECSCCCCEEECT-TCEEEEEEEETT
T ss_pred CcEEEEEeccCC-CCCCEEEEEEcCCC------------------CeEEEeeeeeccCCcceEEEcc-CCeEEEEEecCC
Confidence 478999998765 35578888765311 1123334556778889999999 7775545432
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CCCcEEEEecCCccccccCCccccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
++.|++||+.++. .+.+..+..+.. .+..++|+|++++|++++ .++.|.+|++........... .
T Consensus 62 ~~~v~~~~~~~g~----------~~~~~~~~~~~~-~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~--~- 127 (347)
T 3hfq_A 62 EGGIAAWQIDGQT----------AHKLNTVVAPGT-PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT--V- 127 (347)
T ss_dssp EEEEEEEEEETTE----------EEEEEEEEEESC-CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE--E-
T ss_pred CceEEEEEecCCc----------EEEeeeeecCCC-CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce--e-
Confidence 6899999996651 122334444554 468999999999888777 789999999863111000000 0
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEcc-CCCccceeee
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVE 319 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~ 319 (496)
...+ ..+. ...+...+.+++|+|++. ++++...++.|.+||+. .+........
T Consensus 128 ~~~~-----------------------~~p~--~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 128 QHSG-----------------------HGPR--PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp ECCC-----------------------CCSS--TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred ecCC-----------------------CCCC--ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence 0000 0000 001234588999999995 88888889999999998 3431111111
Q ss_pred c-cCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCC--CceEeccCC------CCEEEEEEcCCCCCEEE
Q 010997 320 K-AHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS--PINKFEGHS------AAVLCVQWSPDKSSVFG 389 (496)
Q Consensus 320 ~-~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~--~~~~~~~h~------~~i~~l~~sp~~~~lla 389 (496)
. .....+..++|+| ++.++ +++..++.|.+|++.... +. .+..+.... ..+..++|+|+|++|++
T Consensus 182 ~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 182 TMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT----GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp ECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT----TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred EcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence 1 2334688999999 88855 556778999999987421 22 222333222 45889999999998877
Q ss_pred EEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 390 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 390 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+...++.|.+|++...+ ....+.....+...+..++|+|++.+++++..++ +.|.+|++.
T Consensus 257 ~~~~~~~v~v~~~~~~g------------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~~~d 316 (347)
T 3hfq_A 257 SNRGYNTLAVFAVTADG------------HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-------DNATLYARD 316 (347)
T ss_dssp EEETTTEEEEEEECGGG------------CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-------TEEEEEEEC
T ss_pred EeCCCCEEEEEEECCCC------------cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-------CcEEEEEEe
Confidence 88889999999997421 1234555566666789999999998887655544 899999765
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.2e-22 Score=205.19 Aligned_cols=287 Identities=11% Similarity=0.094 Sum_probs=201.8
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeC--CCCCCccccCCCCCCCCceEEecCCCCcceeeeecC----CCCceEEec-
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDV--EAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP----TEPYVLSGG- 215 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p----~~~~l~sg~- 215 (496)
+..++|+| ++++|++++.|+.|.+||+ .+. +.+..+..+. .+..++|+| +|++|++++
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~------------~~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP------------TKVAEIKIGI--EARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------EEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEE
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCCC------------cEEEEEecCC--CcceEEeCCCcCCCCCEEEEEEc
Confidence 89999999 8899999999999999999 555 4455666443 468999999 999998887
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l 294 (496)
.+++|.+||..+.+.......... .......| ...+..+.++|+++.++
T Consensus 246 ~~~~v~v~D~~t~~~~~~i~~~g~------------------------------~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 246 WPPQFAIMDGETLEPKQIVSTRGM------------------------------TVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp ESSEEEEEETTTCCEEEEEECCEE------------------------------CSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred cCCeEEEEeccccccceeecccCc------------------------------ccCccccccCCceEEEEECCCCCEEE
Confidence 489999999876543211100000 00000012 23788999999987888
Q ss_pred EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCCCCCCCCceEecc---
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEG--- 370 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 370 (496)
++...++.|.+||+.+.+....... .+...+..++|+| ++++|+ ++..+++|.+||+.+ ++.+..+..
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~t------g~l~~~i~~g~~ 367 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKD------RRLSALVDVGKT 367 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTT------TEEEEEEECSSS
T ss_pred EEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCC------CeEEEeeccCCC
Confidence 9999999999999988663222233 4667788999999 888665 455689999999998 777777764
Q ss_pred -CCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 371 -HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 371 -h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
|.+....+ ++|++..+++++. .|++|.|||+...+... ...+++..+.+|...+..++++|+++++.+.
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--------~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--------YAWKKVAELQGQGGGSLFIKTHPKSSHLYVD 438 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--------TBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--------hcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence 55444333 5788555788876 58999999998721110 1136778888998889999999999987753
Q ss_pred ecCCCCCCC----CCCeEEEeecCCCCcCCchHHHHH---HHhccceEEEeccCC
Q 010997 449 VSDDCDSTG----GGGTLQIWRMSDLIYRPQDEVLAE---LEKFKAHVISCTSKP 496 (496)
Q Consensus 449 ~s~d~~sgg----~Dg~i~iw~~~~~~~~~~~~~~~~---l~~h~~~v~~~~~sP 496 (496)
.. .+ .+++|.|||+.+.......-.+.. +..+...+..++|+|
T Consensus 439 ~~-----~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 439 TT-----FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp CT-----TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred cC-----CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 20 01 157999999985421101111222 345677899999987
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2.3e-21 Score=184.48 Aligned_cols=261 Identities=11% Similarity=0.194 Sum_probs=176.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCC-CcEEEEeCC--CCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDS-PDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~ 209 (496)
....+.|.+.+.+++|+| ++++|++++.+ +.|.+|++. ++. .+....+..+. .+..++|+|+++
T Consensus 30 ~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~s~dg~ 96 (343)
T 1ri6_A 30 LTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGA----------LTFAAESALPG--SLTHISTDHQGQ 96 (343)
T ss_dssp EEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCC----------EEEEEEEECSS--CCSEEEECTTSS
T ss_pred EeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCc----------eeeccccccCC--CCcEEEEcCCCC
Confidence 445567888999999999 77777777765 999999997 331 12233444443 468999999999
Q ss_pred ceEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 210 YVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 210 ~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
+|++++ .++.|.+||+..+.. ......+.. ...+.+++|+|
T Consensus 97 ~l~~~~~~~~~i~~~d~~~~~~-------------------------------------~~~~~~~~~-~~~~~~~~~s~ 138 (343)
T 1ri6_A 97 FVFVGSYNAGNVSVTRLEDGLP-------------------------------------VGVVDVVEG-LDGCHSANISP 138 (343)
T ss_dssp EEEEEETTTTEEEEEEEETTEE-------------------------------------EEEEEEECC-CTTBCCCEECT
T ss_pred EEEEEecCCCeEEEEECCCCcc-------------------------------------ccccccccC-CCCceEEEECC
Confidence 776655 588999999842110 001122222 34588999999
Q ss_pred CCCceEEEEcCCCeEEEEEccC-CCccce---eeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCC
Q 010997 289 SSAQEFCSVGDDSCLILWDARV-GTSPVI---KVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~---~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~ 363 (496)
++..+++++..++.|.+||+.+ ++.... .........+.+++|+| ++.++ +++..++.|.+||+.... +.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~----g~ 213 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH----GN 213 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT----SC
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----Cc
Confidence 9944444444899999999987 441111 11222345788999999 78755 455589999999996421 22
Q ss_pred C--ceEec----cC--CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997 364 P--INKFE----GH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 435 (496)
Q Consensus 364 ~--~~~~~----~h--~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 435 (496)
. ...+. ++ ...+..++|+|+++++++++..++.|.+||+...+ .....+.....+.. +.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~-----------~~~~~~~~~~~~~~-~~~ 281 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG-----------SVLSKEGFQPTETQ-PRG 281 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----------CCEEEEEEEECSSS-CCC
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC-----------CceEEeeeecCCCc-cce
Confidence 1 22222 11 34577899999999887777789999999997421 11133444444444 899
Q ss_pred EEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
++|+|++.+++++... |+.|.+|++.
T Consensus 282 ~~~s~dg~~l~~~~~~-------~~~v~v~~~d 307 (343)
T 1ri6_A 282 FNVDHSGKYLIAAGQK-------SHHISVYEIV 307 (343)
T ss_dssp EEECTTSSEEEEECTT-------TCEEEEEEEE
T ss_pred EEECCCCCEEEEecCC-------CCeEEEEEEc
Confidence 9999999888765444 4999999665
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.1e-22 Score=205.47 Aligned_cols=262 Identities=9% Similarity=0.055 Sum_probs=194.5
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec-
Q 010997 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI- 225 (496)
Q Consensus 147 ~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~- 225 (496)
+++| ++.++++++.|++|.+||..++ +...++..+.. +.+++|+|+|++|++++.|++|.+||+
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~------------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSK------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTC------------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCc------------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECc
Confidence 4788 7789999999999999999888 55667774433 689999999999999999999999999
Q ss_pred -CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc----CCCceEEEEc-C
Q 010997 226 -QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP----SSAQEFCSVG-D 299 (496)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~-~ 299 (496)
.+... +..+. +...+..++|+| ++ .++++++ .
T Consensus 209 ~~t~~~----------------------------------------~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~ 246 (543)
T 1nir_A 209 AKEPTK----------------------------------------VAEIK-IGIEARSVESSKFKGYED-RYTIAGAYW 246 (543)
T ss_dssp SSSCEE----------------------------------------EEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEE
T ss_pred CCCCcE----------------------------------------EEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEcc
Confidence 43221 23344 345679999999 98 5666665 5
Q ss_pred CCeEEEEEccCCCccceeeecc----------C-CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce--
Q 010997 300 DSCLILWDARVGTSPVIKVEKA----------H-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-- 366 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~----------~-~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-- 366 (496)
+++|.+||..+.+ .+..+.. | ...+.++.++|....++++...++.|.+||+.. ...+.
T Consensus 247 ~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~------~~~l~~~ 318 (543)
T 1nir_A 247 PPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD------IDNLTVT 318 (543)
T ss_dssp SSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT------SSSCEEE
T ss_pred CCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC------CCcceeE
Confidence 8999999998877 3444332 2 237899999995567788888999999999987 33333
Q ss_pred EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC----CCCCcceEEecCCC
Q 010997 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASD 442 (496)
Q Consensus 367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~~p~~ 442 (496)
.+. +...+..++|+|+++++++++..++.|.+||+.+. +++..+.. |.+....+ ++|++
T Consensus 319 ~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---------------~l~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 319 SIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---------------RLSALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp EEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---------------EEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred Eec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---------------eEEEeeccCCCCCCCCCccc-CCCCC
Confidence 443 56678899999999988877777999999999884 33333332 54433333 47876
Q ss_pred CcEEEEecCCCCCCCCCCeEEEeecCCCCc-CCchHHHHHHHhccceEEEeccCC
Q 010997 443 PWTVVSVSDDCDSTGGGGTLQIWRMSDLIY-RPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 443 ~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~-~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
..++++.+. .|++|.||++...-. ....++++++.+|.+.+..++|||
T Consensus 382 g~~~~s~~~------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 382 GPVWSTSHL------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp EEEEEEEBS------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred ccEEEeccC------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 677776542 258999999983110 111678888999988889999987
No 134
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=1.9e-22 Score=198.27 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=158.5
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCC----CCCCCceEEecCCCCcceeeeecCCCCceE---
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGA----TNSRPDLILTGHQDNAEFALAMCPTEPYVL--- 212 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~--- 212 (496)
...++.+++++ ++.++++++.+| ++||+............. ....+...+ .|.. .|.+++|+|++++|+
T Consensus 36 ~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~l~~spdg~~lav~~ 111 (434)
T 2oit_A 36 KERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKF-PIHHLALSCDNLTLSACM 111 (434)
T ss_dssp CSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSS-CEEEEEECTTSCEEEEEE
T ss_pred CCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCC-cccEEEEcCCCCEEEEEE
Confidence 34589999999 777888999887 999886432111000000 000111122 2333 699999999999999
Q ss_pred -EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997 213 -SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (496)
Q Consensus 213 -sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (496)
+|+.|++|+|||+.+....... . .........+.+|...|.+++|+|+++
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~-~----------------------------~~~~~~~~~~~~h~~~V~~v~~~p~~~ 162 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQ-Q----------------------------KRPFAYHKLLKDAGGMVIDMKWNPTVP 162 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCS-S----------------------------CCCSEEEECCCSGGGSEEEEEECSSCT
T ss_pred eccCCCceEEEEEccccccCCcC-C----------------------------cceeeeeeccCCCCCceEEEEECCCCC
Confidence 8999999999998754110000 0 000111345667999999999999855
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc-
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG- 370 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~- 370 (496)
.+|++++.||+|++||++++. .......|...|.+++|+| ++.+|++|+.||.|++||++. .....+..
T Consensus 163 ~~las~s~Dg~v~iwD~~~~~--~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-------~~~~~~~~~ 232 (434)
T 2oit_A 163 SMVAVCLADGSIAVLQVTETV--KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-------QEKKVIPCP 232 (434)
T ss_dssp TEEEEEETTSCEEEEEESSSE--EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-------CEEEEECCC
T ss_pred CEEEEEECCCeEEEEEcCCCc--ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-------cccccccCC
Confidence 899999999999999999875 3444557889999999999 899999999999999999983 23333333
Q ss_pred ------CCCCEEEEEEcCCCCCEEEEEeCCCc------EEEEECCCC
Q 010997 371 ------HSAAVLCVQWSPDKSSVFGSSAEDGL------LNIWDYEKV 405 (496)
Q Consensus 371 ------h~~~i~~l~~sp~~~~llas~~~dg~------i~iwd~~~~ 405 (496)
|...|.+++|++++.++++.+..||. +++|++++.
T Consensus 233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 33489999999988766555555543 899999874
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=9.8e-22 Score=188.07 Aligned_cols=265 Identities=9% Similarity=0.042 Sum_probs=191.3
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeC-------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~ 209 (496)
......+..++|+| +++.+++++. ++.|.+||..++ +....+.... .+.+++|+|+++
T Consensus 37 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~--~~~~~~~s~dg~ 101 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTL------------EVTQAIHNDL--KPFGATINNTTQ 101 (353)
T ss_dssp EEEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTC------------CEEEEEEESS--CCCSEEEETTTT
T ss_pred hhhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCC------------eEEEEEecCC--CcceEEECCCCC
Confidence 34556788999999 6666666653 568999999887 4444444433 367999999998
Q ss_pred c-eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC---------C
Q 010997 210 Y-VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE---------D 279 (496)
Q Consensus 210 ~-l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~ 279 (496)
+ ++++..++.|.+||..++.... .+..+. .
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~ 141 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEVKG----------------------------------------RLVLDDRKRTEEVRPL 141 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEE----------------------------------------EEESCCCCCCSSCCCC
T ss_pred EEEEEecCCCEEEEEeCCCCeeEE----------------------------------------EEecCCCccccccCCC
Confidence 5 4556668999999998654321 111111 1
Q ss_pred ceeEEEEccCCCceEEEE-cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 280 TVEDVTFCPSSAQEFCSV-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
.+.+++|+|++..+++++ +.++.|.+||+.+++ ....+..+...+.+++|+| ++.++++++.++.|.+||+.+
T Consensus 142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~--- 215 (353)
T 3vgz_A 142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIK--LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTAD--- 215 (353)
T ss_dssp EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTT---
T ss_pred CCceEEECCCCCEEEEEecCCCceEEEEcCCCCc--eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCC---
Confidence 368899999995444444 358999999998876 4555544666789999999 899999999999999999998
Q ss_pred CCCCCCceEecc----CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997 359 NGVGSPINKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 434 (496)
Q Consensus 359 ~~~~~~~~~~~~----h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 434 (496)
+..+..+.. +...+..++|+|++.+++++...++.|.+||+... ..+....... ..
T Consensus 216 ---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---------------~~~~~~~~~~--~~ 275 (353)
T 3vgz_A 216 ---NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---------------NILAKVAAPE--SL 275 (353)
T ss_dssp ---TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---------------CEEEEEECSS--CC
T ss_pred ---CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---------------cEEEEEEcCC--Cc
Confidence 666666553 56678899999999988777777799999999774 2222222222 26
Q ss_pred eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.++|+|++.+++++...+ +.|.+||+. +++.+..+... ..+.+++|+|
T Consensus 276 ~~~~s~dg~~l~v~~~~~-------~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~s~ 323 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQA-------GKVSVIDAK------SYKVVKTFDTP-THPNSLALSA 323 (353)
T ss_dssp CEEEETTTTEEEEEETTT-------TEEEEEETT------TTEEEEEEECC-SEEEEEEECT
T ss_pred eEEECCCCCEEEEEECCC-------CeEEEEECC------CCeEEEEEecC-CCCCeEEEcC
Confidence 799999999888765544 999999998 45555555433 3568888876
No 136
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=8e-21 Score=182.60 Aligned_cols=325 Identities=9% Similarity=0.026 Sum_probs=203.2
Q ss_pred ceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCC
Q 010997 83 NRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDS 162 (496)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~d 162 (496)
..+.+|+|+++.+ ....++++.+.... ..+...... |...+..++|+| ++++|++++.+
T Consensus 12 ~~~~~~vg~y~~~-~~~~i~~~~~d~~~------------------g~~~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~ 70 (361)
T 3scy_A 12 SELTMLVGTYTSG-NSKGIYTFRFNEET------------------GESLPLSDA-EVANPSYLIPSA-DGKFVYSVNEF 70 (361)
T ss_dssp GEEEEEEEECCSS-SCCEEEEEEEETTT------------------CCEEEEEEE-ECSCCCSEEECT-TSSEEEEEECC
T ss_pred CceEEEEEeccCC-CCCCEEEEEEeCCC------------------CCEEEeecc-cCCCCceEEECC-CCCEEEEEEcc
Confidence 3589999999875 46778888765311 112233334 778889999999 78888888875
Q ss_pred ----CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CCCcEEEEecCCccccccCCcc
Q 010997 163 ----PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPA 237 (496)
Q Consensus 163 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~ 237 (496)
+.|.+|++...... .+.+.....+.. ....+++ ++++|++++ .++.|.+|++............
T Consensus 71 ~~~~~~v~~~~~~~~~g~--------~~~~~~~~~~~~-~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~ 139 (361)
T 3scy_A 71 SKDQAAVSAFAFDKEKGT--------LHLLNTQKTMGA-DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV 139 (361)
T ss_dssp SSTTCEEEEEEEETTTTE--------EEEEEEEECSSS-CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE
T ss_pred CCCCCcEEEEEEeCCCCc--------EEEeeEeccCCC-CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee
Confidence 79999998763100 112223333333 3456777 777666655 6889999999743211100000
Q ss_pred ccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc----
Q 010997 238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---- 313 (496)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---- 313 (496)
....+. .. .....+...+.+++|+|++..+++++..++.|.+|++.....
T Consensus 140 --~~~~g~---------------------~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 140 --IEFKGS---------------------GP---DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK 193 (361)
T ss_dssp --EECCCC---------------------CS---CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred --EEccCC---------------------CC---CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence 000000 00 000112345788999999954666666789999999876542
Q ss_pred c-c------eeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCC--ceEe---ccCCCCEEEEEE
Q 010997 314 P-V------IKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSP--INKF---EGHSAAVLCVQW 380 (496)
Q Consensus 314 ~-~------~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~--~~~~---~~h~~~i~~l~~ 380 (496)
. . ......+...+..++|+| ++.++++++ .++.|.+||+.. +.. +..+ ..+...+..++|
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~------g~~~~~~~~~~~~~~~~~~~~i~~ 266 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYAD------GMLDEIQTVAADTVNAQGSGDIHL 266 (361)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEET------TEEEEEEEEESCSSCCCCEEEEEE
T ss_pred cceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecC------CceEEeEEEecCCCCCCCcccEEE
Confidence 1 1 122234556788999999 888776665 689999999985 322 2222 233456789999
Q ss_pred cCCCCCEEEEEeC-CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCC
Q 010997 381 SPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG 459 (496)
Q Consensus 381 sp~~~~llas~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~D 459 (496)
+|+|++|+++... ++.|.+|++.... .....+..... ...+.+++|+|++.+++++...+
T Consensus 267 spdg~~l~v~~~~~~~~i~v~~~~~~~-----------g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~------- 327 (361)
T 3scy_A 267 SPDGKYLYASNRLKADGVAIFKVDETN-----------GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT------- 327 (361)
T ss_dssp CTTSSEEEEEECSSSCEEEEEEECTTT-----------CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT-------
T ss_pred CCCCCEEEEECCCCCCEEEEEEEcCCC-----------CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC-------
Confidence 9999987666666 6899999996311 11123333333 45688999999999888765444
Q ss_pred CeEEEeecCCCCcCCchHHHHHH-HhccceEEEeccC
Q 010997 460 GTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSK 495 (496)
Q Consensus 460 g~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~s 495 (496)
+.|.+|++... ++++.... ..+...+.+++|.
T Consensus 328 ~~v~v~~~d~~----~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 328 NVIQIFERDQA----TGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TEEEEEEECTT----TCCEEECSCCEECSSEEEEEEE
T ss_pred CCEEEEEEECC----CCcEeecceeeeCCCCeEEEEc
Confidence 89999877521 23322221 1234567888875
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=5.2e-21 Score=181.43 Aligned_cols=248 Identities=9% Similarity=0.069 Sum_probs=173.8
Q ss_pred cCCCceeEEEecCCCCc-EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCC-ceEEecCCCCcceeeeecCCCCceEEec
Q 010997 138 IHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP-DLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~-~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
.+...+ .++|+| +++ +++++..++.|.+||+.++ +. ...+..+.. +..+++|+|++++|+++.
T Consensus 38 ~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~ 102 (331)
T 3u4y_A 38 LGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLE------------PPKVVAIQEGQS-SMADVDITPDDQFAVTVT 102 (331)
T ss_dssp CCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSS------------SCEEEEEEECSS-CCCCEEECTTSSEEEECC
T ss_pred ccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCC------------ceeEEecccCCC-CccceEECCCCCEEEEec
Confidence 345556 999999 665 5555555899999999887 33 445555554 444599999999998665
Q ss_pred CCC---cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 216 KDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 216 ~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
.++ .|.+||+.++... ..+.. .....+++|+|++..
T Consensus 103 ~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 103 GLNHPFNMQSYSFLKNKFI----------------------------------------STIPI-PYDAVGIAISPNGNG 141 (331)
T ss_dssp CSSSSCEEEEEETTTTEEE----------------------------------------EEEEC-CTTEEEEEECTTSSC
T ss_pred CCCCcccEEEEECCCCCeE----------------------------------------EEEEC-CCCccceEECCCCCE
Confidence 553 8999999764321 22222 334689999999955
Q ss_pred eEEEEcCCCe-EEEEEccCCCccce--eeeccCCCCeEEEEecCCCCcE-EEEEcCCCcEEEEeCCCCCCCCCCCC---c
Q 010997 293 EFCSVGDDSC-LILWDARVGTSPVI--KVEKAHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRNLTSNGVGSP---I 365 (496)
Q Consensus 293 ~l~s~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~v~~i~~sp~~~~~-l~sgs~dg~i~iwd~~~~~~~~~~~~---~ 365 (496)
++++...++. |.+|++........ .........+..++|+| ++.+ ++++..++.|.+||+.+ +.. +
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~------~~~~~~~ 214 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQN------PENITLL 214 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSS------TTSCEEE
T ss_pred EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCC------Cccccee
Confidence 6666677788 99999986442110 11123456689999999 7874 55666789999999987 566 6
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC----CC---CcceEEe
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH----RD---KVVDFHW 438 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~---~V~~~~~ 438 (496)
..+.. ...+..++|+|++++++++...++.|.+||+.+... ..+.....+ .. ....++|
T Consensus 215 ~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
T 3u4y_A 215 NAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-------------SFVKSFGHGLLIDPRPLFGANQMAL 280 (331)
T ss_dssp EEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-------------EEEEEEECCCCCCCGGGTTCCCEEE
T ss_pred eeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-------------eeecccccccccCCCCcccccceEE
Confidence 66664 466789999999998777766788999999987411 111111111 11 2356899
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+|++.++++++.++ +.|.+|++..
T Consensus 281 spdg~~l~v~~~~~-------~~v~v~d~~~ 304 (331)
T 3u4y_A 281 NKTETKLFISANIS-------RELKVFTISG 304 (331)
T ss_dssp CTTSSEEEEEETTT-------TEEEEEETTS
T ss_pred CCCCCEEEEecCCC-------CcEEEEEecC
Confidence 99999888766554 8999999984
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.9e-22 Score=187.46 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=178.2
Q ss_pred EEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCC-ccccccCCc
Q 010997 158 THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-HITSSATDP 236 (496)
Q Consensus 158 t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~ 236 (496)
+++.++.|++||+.++ +. ..+..|.. .|.+++|+|++++|++++ ++.|.+||+.+ +...
T Consensus 17 ~~~~~~~i~~~d~~~~------------~~-~~~~~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~----- 76 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR------------KM-RVVWQTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE----- 76 (297)
T ss_dssp -CCCCEEEEEEETTTT------------EE-EEEEEESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----
T ss_pred CCCcceeEEEEeCCCC------------ce-eeeccCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----
Confidence 4567899999999876 22 24555665 689999999999999987 88999999976 4321
Q ss_pred cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceEEEEc--CCCeEEEEEccCCCc
Q 010997 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTS 313 (496)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~ 313 (496)
.....+ ...+.+++|+|++ ..|++++ .++.+.||.+.....
T Consensus 77 -----------------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 77 -----------------------------------KVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp -----------------------------------ECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCC
T ss_pred -----------------------------------EeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCC
Confidence 222233 3678899999999 6777777 445566665543221
Q ss_pred cceeeeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997 314 PVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 314 ~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~ 392 (496)
. ...+ .+...+.+++|+| ++.+|+ +++.++.++||++... ......+..+...+.+++|+|++..+++++.
T Consensus 121 ~-~~~~-~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 192 (297)
T 2ojh_A 121 T-PRLM-TKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPDGRWIYFNSS 192 (297)
T ss_dssp C-CEEC-CSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred c-eEEe-ecCCCccceEECC-CCCEEEEEECCCCceEEEEEECC-----CCcceEcccCCCccccceECCCCCEEEEEec
Confidence 1 2333 2334589999999 787766 7888999999997542 2445667778889999999999997665665
Q ss_pred CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC-----CCCeEEEeec
Q 010997 393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG-----GGGTLQIWRM 467 (496)
Q Consensus 393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg-----~Dg~i~iw~~ 467 (496)
.++.++||++...+ ..+..+..|...+..++|+|++.+++++..++ ... .++.|++|++
T Consensus 193 ~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 193 RTGQMQIWRVRVDG--------------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDA--DVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp TTSSCEEEEEETTS--------------SCEEECCCCSEEEEEEEECTTSSEEEEEEEET--TCCSCCSSEEEEEEEEET
T ss_pred CCCCccEEEECCCC--------------CCcEEEecCCcccCCeEECCCCCEEEEEEcCC--CCCcccccCceEEEEEec
Confidence 69999999987421 22344566777889999999998776554432 000 2367999999
Q ss_pred CCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 468 SDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 468 ~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
... ....+..+.+|...|..++|+|
T Consensus 257 ~~~----~~~~~~~~~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 257 DGG----NVETLFDLFGGQGTMNSPNWSP 281 (297)
T ss_dssp TSC----SCEEEEEEEESTTTSCSCCBCT
T ss_pred CCC----CceeeeccCCCCcccccceECC
Confidence 832 1112333446777888899987
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=4.1e-22 Score=210.36 Aligned_cols=263 Identities=11% Similarity=0.103 Sum_probs=183.6
Q ss_pred CCceeEEEecCCCCcEEEEEeC-CC-----cEEEEeCCCCCCccccCCCCCCCCceEEecCCC-----------------
Q 010997 140 PGEVNRIRELPQNTKIVATHTD-SP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD----------------- 196 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~----------------- 196 (496)
...|.+++|+| ++++||+++. || .|++||+.++. ....+..+..
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQ------------TRLLVDSKVVLPGTETLSDEEKARRER 102 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCC------------EEEEECGGGTC----------------
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCc------------eeEccchhhcccccccccchhhhhhhh
Confidence 45699999999 8899999988 88 89999998873 2223322221
Q ss_pred ------CcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 197 ------NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 197 ------~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
..|.+++|+|||++|++++. +.|.+||+.++... .
T Consensus 103 ~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~--------------------------------------~ 143 (741)
T 2ecf_A 103 QRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA--------------------------------------A 143 (741)
T ss_dssp ----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT--------------------------------------S
T ss_pred hhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc--------------------------------------e
Confidence 13789999999999999886 99999999764100 0
Q ss_pred eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCC----------------eEEEEecCC
Q 010997 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD----------------LHCVDWNPL 334 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------v~~i~~sp~ 334 (496)
...+..|...+.+++|+|+| ..|+.++ ++.|.+||+.++. .......+... +.+++|+|
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp- 218 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGR--QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP- 218 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTE--EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-
T ss_pred EEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCC--EEEeccCCccceeccccceeeeeccccccceEECC-
Confidence 13345567789999999999 6777776 4699999998765 22222223222 47899999
Q ss_pred CCcEEEEEcCCC---------------------------------cEEEEeCCC-CCCCCCCCCceEec---cCCCCEEE
Q 010997 335 DDNLILTGSADN---------------------------------SVRMFDRRN-LTSNGVGSPINKFE---GHSAAVLC 377 (496)
Q Consensus 335 ~~~~l~sgs~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~---~h~~~i~~ 377 (496)
++.+|++++.|+ .|.+||+.+ .. ...+. .|...+..
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~ 291 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-------TQWIDLGKEQDIYLAR 291 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-------CEEECCCSCSSEEEEE
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-------eEEecCCCCcceEEEE
Confidence 999999887765 788899875 32 22222 47788999
Q ss_pred EEEcCCCCCEEEEEe----CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC----CcceEEecCCCCcEEEEe
Q 010997 378 VQWSPDKSSVFGSSA----EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD----KVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 378 l~~sp~~~~llas~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~~~~~p~~~~l~~s~ 449 (496)
++| |+|+.|++++. .+..|.+||+.+.. .......+.. .+..++|+|++. +++++
T Consensus 292 ~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---------------~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~ 354 (741)
T 2ecf_A 292 VNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---------------QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSS 354 (741)
T ss_dssp EEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------------EEEEEEEECSSCCCCCSCCEECTTSC-EEEEE
T ss_pred EEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------------eEEEEEcCCCCcCCcCCceEECCCCe-EEEEe
Confidence 999 99997654443 35679999998741 1112222222 457899999988 66655
Q ss_pred cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEe-ccCC
Q 010997 450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC-TSKP 496 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~-~~sP 496 (496)
+. ||.++||.+.. .+. ...+..|...|.++ +|+|
T Consensus 355 ~~-------~g~~~l~~~~~-----~~~-~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 355 ER-------TGFQHLYRIDS-----KGK-AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp CT-------TSSCEEEEECS-----SSC-EEESCCSSSCEEEEEEEET
T ss_pred cC-------CCccEEEEEcC-----CCC-eeeeeecceEEEeEeEEeC
Confidence 44 48888887762 123 55666777777776 4776
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=8e-22 Score=208.19 Aligned_cols=272 Identities=13% Similarity=0.082 Sum_probs=187.8
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
..|.+++|+| ++++|++++. +.|++||+.++.. .....+..|.. .+.+++|+|||++|++++ ++.|
T Consensus 109 ~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~----------~~~~~l~~~~~-~~~~~~~SPDG~~la~~~-~~~i 174 (741)
T 2ecf_A 109 TGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGK----------AAVRQLTHGEG-FATDAKLSPKGGFVSFIR-GRNL 174 (741)
T ss_dssp EESCCCEECT-TSSEEEEEET-TEEEEEESSSCST----------TSCCBCCCSSS-CEEEEEECTTSSEEEEEE-TTEE
T ss_pred cCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCc----------ceEEEcccCCc-ccccccCCCCCCEEEEEe-CCcE
Confidence 4589999999 8888888886 8999999987610 01223455655 588999999999999887 5699
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC--------CCceeEEEEccCCCc
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH--------EDTVEDVTFCPSSAQ 292 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--------~~~v~~l~~~~~~~~ 292 (496)
.+||+.++........ .. .....++ ...+.++.|+|++ .
T Consensus 175 ~~~d~~~g~~~~~~~~-------~~-------------------------~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~ 221 (741)
T 2ecf_A 175 WVIDLASGRQMQLTAD-------GS-------------------------TTIGNGIAEFVADEEMDRHTGYWWAPDD-S 221 (741)
T ss_dssp EEEETTTTEEEECCCC-------CC-------------------------SSEEESCCCHHHHHHSCCCCSEEECTTS-S
T ss_pred EEEecCCCCEEEeccC-------Cc-------------------------cceeccccceeeeeccccccceEECCCC-C
Confidence 9999986543211100 00 0001111 1235789999999 6
Q ss_pred eEEEEcCCC---------------------------------eEEEEEccC-CCccceeeec--cCCCCeEEEEecCCCC
Q 010997 293 EFCSVGDDS---------------------------------CLILWDARV-GTSPVIKVEK--AHDADLHCVDWNPLDD 336 (496)
Q Consensus 293 ~l~s~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~--~~~~~v~~i~~sp~~~ 336 (496)
.|++++.|+ .|.+||+.+ ++ ...... .|...+..++| | ++
T Consensus 222 ~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~-p-Dg 297 (741)
T 2ecf_A 222 AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ--TQWIDLGKEQDIYLARVNW-R-DP 297 (741)
T ss_dssp CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC--CEEECCCSCSSEEEEEEEE-E-ET
T ss_pred EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc--eEEecCCCCcceEEEEEEe-C-CC
Confidence 777776655 788999987 76 222221 47788999999 9 89
Q ss_pred cEEEEEcC-----CCcEEEEeCCCCCCCCCCCCceEeccCCC----CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997 337 NLILTGSA-----DNSVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407 (496)
Q Consensus 337 ~~l~sgs~-----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~----~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~ 407 (496)
.+|++++. +..|.+||+.+ +.....+..+.. .+..++|+|+|+ ++++++.||.++||.+...+
T Consensus 298 ~~l~~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~- 369 (741)
T 2ecf_A 298 QHLSFQRQSRDQKKLDLVEVTLAS------NQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG- 369 (741)
T ss_dssp TEEEEEEEETTSSEEEEEEEETTT------CCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSS-
T ss_pred CEEEEEEecccCCeEEEEEEECCC------CceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCC-
Confidence 98887654 56899999988 565555554443 456899999999 67788889988898876421
Q ss_pred ccCCCCCCCCCCCeeEEEecCCCCCcceE-EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997 408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDF-HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK 486 (496)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~-~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~ 486 (496)
. ...+..|...|..+ .|+|++..++++++.+ ....++||++.. .+..+..+.. .
T Consensus 370 -------------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~-----~~~~~~l~~~~~-----~g~~~~~l~~-~ 424 (741)
T 2ecf_A 370 -------------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE-----SARESQIYAVPL-----QGGQPQRLSK-A 424 (741)
T ss_dssp -------------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSS-----CTTCBEEEEEET-----TCCCCEECCC-S
T ss_pred -------------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC-----CCceEEEEEEEc-----CCCCeeeccc-C
Confidence 2 34456677778887 5999998887766544 112899999862 1222333443 4
Q ss_pred ceEEEeccCC
Q 010997 487 AHVISCTSKP 496 (496)
Q Consensus 487 ~~v~~~~~sP 496 (496)
..+.+++|||
T Consensus 425 ~~~~~~~~sp 434 (741)
T 2ecf_A 425 PGMHSASFAR 434 (741)
T ss_dssp CSEEEEEECT
T ss_pred CCceEEEECC
Confidence 5677888887
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=6e-21 Score=181.04 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=169.1
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CCcEEEEec
Q 010997 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSI 225 (496)
Q Consensus 147 ~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg~i~iwd~ 225 (496)
.|.+..+.++++++.++.|.+||+.++ +....+..+.. .+ +++|+|++++|++++. ++.|.+||+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL------------EILNQITLGYD-FV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC------------CEEEEEECCCC-EE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc------------ceeeeEEccCC-cc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 355546667889999999999999887 44445555544 45 9999999996665554 899999999
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC---e
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---C 302 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~ 302 (496)
.++... ...+..+..+..+++|+|++ .+++++..++ .
T Consensus 70 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 70 QLEPPK---------------------------------------VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFN 109 (331)
T ss_dssp SSSSCE---------------------------------------EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCE
T ss_pred CCCcee---------------------------------------EEecccCCCCccceEECCCC-CEEEEecCCCCccc
Confidence 754320 24455556666669999999 5666555553 9
Q ss_pred EEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCc-EEEEeCCCCCCCCCCCCc----eEeccCCCCEE
Q 010997 303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNS-VRMFDRRNLTSNGVGSPI----NKFEGHSAAVL 376 (496)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~-i~iwd~~~~~~~~~~~~~----~~~~~h~~~i~ 376 (496)
|.+||+.+++ ..... .......+++|+| +++ +++++..++. |.+|++... ..+ .........+.
T Consensus 110 i~v~d~~~~~--~~~~~-~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~------g~~~~~~~~~~~~~~~~~ 179 (331)
T 3u4y_A 110 MQSYSFLKNK--FISTI-PIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDAD------GVLFDTGQEFISGGTRPF 179 (331)
T ss_dssp EEEEETTTTE--EEEEE-ECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTT------CCEEEEEEEEECSSSSEE
T ss_pred EEEEECCCCC--eEEEE-ECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCC------CcEeecCCccccCCCCcc
Confidence 9999998876 34444 3455679999999 776 5555566688 999999852 222 12223455689
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 456 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg 456 (496)
.++|+|+++++++++..++.|.+||+..... ...+..+.. ...+..++|+|++.+++++...
T Consensus 180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~------------~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~----- 241 (331)
T 3u4y_A 180 NITFTPDGNFAFVANLIGNSIGILETQNPEN------------ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES----- 241 (331)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSSTTS------------CEEEEEEEC-SSCCCCEEECTTSSEEEEECSS-----
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcc------------cceeeeccC-CCCCceEEECCCCCEEEEEEcC-----
Confidence 9999999998887887899999999987411 111333333 3567899999999988775543
Q ss_pred CCCCeEEEeecCC
Q 010997 457 GGGGTLQIWRMSD 469 (496)
Q Consensus 457 g~Dg~i~iw~~~~ 469 (496)
++.|.+||+..
T Consensus 242 --~~~i~~~d~~~ 252 (331)
T 3u4y_A 242 --TVDVFNFNQLS 252 (331)
T ss_dssp --EEEEEEEETTT
T ss_pred --CCEEEEEECCC
Confidence 48899999983
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.6e-21 Score=182.47 Aligned_cols=269 Identities=8% Similarity=0.094 Sum_probs=171.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC-CcEEEEecC--Cc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-KSVVLWSIQ--DH 228 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D-g~i~iwd~~--~~ 228 (496)
...++++++.++.|++||+..... .+.... ..|.. .+.+++|+|++++|++++.+ +.|.+|++. ++
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~---------~~~~~~-~~~~~-~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~ 72 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGA---------LTLTQV-VDVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 72 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSC---------EEEEEE-EECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCc---------EEEeee-EecCC-CCceEEECCCCCEEEEeecCCCeEEEEEecCCCC
Confidence 344566668899999999964210 011222 23444 57899999999988888876 999999986 22
Q ss_pred cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEc
Q 010997 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 308 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 308 (496)
.. ..+..+..+. .+..++|+|++..+++++..++.|.+||+
T Consensus 73 ~~--------------------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 73 AL--------------------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CE--------------------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ce--------------------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 11 1112333333 78899999999545556666899999999
Q ss_pred cCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCce--Eecc-CCCCEEEEEEcCC
Q 010997 309 RVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPIN--KFEG-HSAAVLCVQWSPD 383 (496)
Q Consensus 309 ~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~--~~~~-h~~~i~~l~~sp~ 383 (496)
..+.. ...... .....+.+++|+| ++.++++++ .++.|.+||+..... ...+. .+.. ....+..++|+|+
T Consensus 114 ~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 114 EDGLPVGVVDVV-EGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp ETTEEEEEEEEE-CCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEEEEECSTTCCEEEEEECTT
T ss_pred CCCccccccccc-cCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCc---eeeecccccccCCCCCcceEEECCC
Confidence 53221 122333 3445689999999 887777666 899999999986210 11111 2222 3457889999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec----CC--CCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA----GH--RDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~h--~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
+.++++++..++.|.+||+..... ......... ++ ...+..++|+|++.+++++...+
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~----- 252 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHG-----------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA----- 252 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTS-----------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----
T ss_pred CCEEEEEeCCCCEEEEEEecCCCC-----------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----
Confidence 998777777899999999964211 011111111 11 23566899999999888766544
Q ss_pred CCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 458 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 458 ~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.|++|++.... ...+.+..+..+.. +..++|+|
T Consensus 253 --~~i~v~d~~~~~--~~~~~~~~~~~~~~-~~~~~~s~ 286 (343)
T 1ri6_A 253 --SLITVFSVSEDG--SVLSKEGFQPTETQ-PRGFNVDH 286 (343)
T ss_dssp --TEEEEEEECTTS--CCEEEEEEEECSSS-CCCEEECT
T ss_pred --CEEEEEEEcCCC--CceEEeeeecCCCc-cceEEECC
Confidence 999999997310 01122223333333 66677765
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.8e-21 Score=191.30 Aligned_cols=224 Identities=15% Similarity=0.205 Sum_probs=154.0
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
.+..+++++++.+|++++.|+ |++|+............ ... ......+ .....+
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~-------~~~-----------------~~~~~~~-~~~~~~ 91 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD-------DPN-----------------KIVDKVQ-GLLVPM 91 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-------CTT-----------------CEEECCC-CEEECC
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc-------Ccc-----------------cccccCc-cccccC
Confidence 367899999999999999888 89988653211000000 000 0000000 111246
Q ss_pred CCceeEEEEccCCCceEE----EEcCCCeEEEEEccCC-----Cc--c--ceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997 278 EDTVEDVTFCPSSAQEFC----SVGDDSCLILWDARVG-----TS--P--VIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~----s~~~dg~i~iwd~~~~-----~~--~--~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
...|.+++|+|++ .+|+ +|+.|+.|+|||+++. .. + ....+.+|...|.+++|+|.++.+|++++.
T Consensus 92 ~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 92 KFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp SSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 6789999999999 6777 8899999999999764 10 1 134456789999999999944899999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
||+|++||+++ +..+....+|...|.+++|+|+|.+ |++|+.||.|++||++. ... ..+.
T Consensus 171 Dg~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~~-~~~------------~~~~ 230 (434)
T 2oit_A 171 DGSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPTL-QEK------------KVIP 230 (434)
T ss_dssp TSCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTTC-CEE------------EEEC
T ss_pred CCeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccCC-ccc------------cccc
Confidence 99999999998 5556666778999999999999986 57999999999999982 110 0010
Q ss_pred Ee----cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 425 QH----AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 425 ~~----~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.+ ..|...|.+++|++++.++++..+.|- .-.....+++|++..
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg-~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG-TLETSPDVVMALLPK 278 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC-CSSSCCEEEEEECCC
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCC-ccCCCCceEEEEecc
Confidence 01 123448999999997766555443320 001123599999974
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=5.4e-21 Score=201.26 Aligned_cols=280 Identities=10% Similarity=0.008 Sum_probs=174.9
Q ss_pred ceeEEEecCCCCcEEEEEeCC---------CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 142 EVNRIRELPQNTKIVATHTDS---------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.|.+++|+| ++++||+++.+ +.|++||+.++.. +.+....+|.. .+..++|+|+|++|+
T Consensus 62 ~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~~~~~~-~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP----------QSLDPPEVSNA-KLQYAGWGPKGQQLI 129 (723)
T ss_dssp TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC----------EECCCTTCCSC-CCSBCCBCSSTTCEE
T ss_pred ccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCce----------EeccCCccccc-cccccEECCCCCEEE
Confidence 499999999 88899988764 7888999988731 11111223433 478999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC---------CceeE
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE---------DTVED 283 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~ 283 (496)
+++. +.|.+||+.++........ +. .. ..+.++. ..+.+
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~-------~~----------------------~~--~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVST-------GK----------------------EG--VIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECC-------CB----------------------TT--TEEEEECCHHHHHTTSSSSEE
T ss_pred EEEC-CeEEEEECCCCceEEEecC-------CC----------------------CC--ceECcccceeEEEEeccCcce
Confidence 9885 8999999986543211000 00 00 0111111 13478
Q ss_pred EEEccCCCceEEEEcCCC----------------------------------eEEEEEccCCCccceeeecc------CC
Q 010997 284 VTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSPVIKVEKA------HD 323 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~------~~ 323 (496)
++|+|+| ..|++++.|+ .|++||+.+++ ....+.. +.
T Consensus 178 ~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 178 HWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT--HDLEMMPPDDPRMRE 254 (723)
T ss_dssp EEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSS
T ss_pred EEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc--eeEEeeCCccCCCcc
Confidence 9999999 6777776543 79999998876 2233333 35
Q ss_pred CCeEEEEecCCCCcEEEEEcC----CCcEEEEeCCCCCCCCCCCCceEecc-CCCCE----EEEEEcCCCCCEEEE-EeC
Q 010997 324 ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEG-HSAAV----LCVQWSPDKSSVFGS-SAE 393 (496)
Q Consensus 324 ~~v~~i~~sp~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~i----~~l~~sp~~~~llas-~~~ 393 (496)
..+..++|+| ++.+|++.+. +..|.+||+.+ +.....+.. +...+ ..++|+|+|+.|+.. +..
T Consensus 255 ~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 255 YYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT------GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp EEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT------CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred ceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC------CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 6789999999 8988877643 35799999987 555544433 33433 378999999987654 556
Q ss_pred CC------cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc-eEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997 394 DG------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV-DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 466 (496)
Q Consensus 394 dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~ 466 (496)
++ .|.+||+...+... ....+..+...+. .++|+|++..+++++.++ ..+.++||+
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~------------~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~~~l~~ 390 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSND------------NIQSITSGDWDVTKILAYDEKGNKIYFLSTED-----LPRRRQLYS 390 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSC------------CCCBSCCSSSCEEEEEEEETTTTEEEEEESSS-----CTTCCEEEE
T ss_pred cCCCcceeEEEEEeccCCCCcc------------ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC-----CCcceEEEE
Confidence 77 46667732222100 0011122222344 369999998877654432 127899999
Q ss_pred cCCCCcCCchHHHHHHHh---ccceEEEeccCC
Q 010997 467 MSDLIYRPQDEVLAELEK---FKAHVISCTSKP 496 (496)
Q Consensus 467 ~~~~~~~~~~~~~~~l~~---h~~~v~~~~~sP 496 (496)
+... .+.....+.. |...+..++|+|
T Consensus 391 ~~~~----~~~~~~~l~~~~~~~~~~~~~~~sp 419 (723)
T 1xfd_A 391 ANTV----GNFNRQCLSCDLVENCTYFSASFSH 419 (723)
T ss_dssp ECSS----TTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred EeCC----CCCCcceecccccCCCCeEEEEECC
Confidence 8631 1111222332 566678888887
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=2.5e-21 Score=203.74 Aligned_cols=229 Identities=11% Similarity=0.111 Sum_probs=162.1
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC--cceeeeecCCCCceEEecCC--
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEPYVLSGGKD-- 217 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~--~v~~l~~~p~~~~l~sg~~D-- 217 (496)
.+.+++|+| +++++++ +.||.|++||+.++ +....+.+|... .|.+++|+|||++|++++.+
T Consensus 18 ~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 18 HDPEAKWIS-DTEFIYR-EQKGTVRLWNVETN------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGC------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred cccccEEcC-CCcEEEE-eCCCCEEEEECCCC------------cEEEEeccccccccccceEEECCCCCEEEEEecCcc
Confidence 477889999 7777776 78999999999887 444556666531 37899999999999998764
Q ss_pred -------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997 218 -------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (496)
Q Consensus 218 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (496)
+.|.+||+.++.... +....+|...+..++|+|+|
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~--------------------------------------l~~~~~~~~~~~~~~~SPdG 125 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQS--------------------------------------LDPPEVSNAKLQYAGWGPKG 125 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEE--------------------------------------CCCTTCCSCCCSBCCBCSST
T ss_pred ceeecceeeEEEEECCCCceEe--------------------------------------ccCCccccccccccEECCCC
Confidence 788899998654210 01112345568899999999
Q ss_pred CceEEEEcCCCeEEEEEccCCCccceeeeccCCCC------------------eEEEEecCCCCcEEEEEcCCC------
Q 010997 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD------------------LHCVDWNPLDDNLILTGSADN------ 346 (496)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------v~~i~~sp~~~~~l~sgs~dg------ 346 (496)
..|+.++. +.|++||+.++. .......+... +.+++|+| ++..|++++.|+
T Consensus 126 -~~la~~~~-~~i~~~~~~~g~--~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~ 200 (723)
T 1xfd_A 126 -QQLIFIFE-NNIYYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIM 200 (723)
T ss_dssp -TCEEEEET-TEEEEESSSSSC--CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEE
T ss_pred -CEEEEEEC-CeEEEEECCCCc--eEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceE
Confidence 67777765 799999998876 33333333332 37899999 999999887553
Q ss_pred ----------------------------cEEEEeCCCCCCCCCCCCceEeccC------CCCEEEEEEcCCCCCEEEEEe
Q 010997 347 ----------------------------SVRMFDRRNLTSNGVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 347 ----------------------------~i~iwd~~~~~~~~~~~~~~~~~~h------~~~i~~l~~sp~~~~llas~~ 392 (496)
.|++||+.+ +.....+..+ ...+..++|+|+|+.+ ++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l-~~~~ 273 (723)
T 1xfd_A 201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG------PTHDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWL 273 (723)
T ss_dssp EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEE
T ss_pred EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC------CceeEEeeCCccCCCccceeEEEEEeCCCeEE-EEEE
Confidence 799999987 4544555543 6679999999999854 4443
Q ss_pred ----CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc----ceEEecCCCCcEEEE
Q 010997 393 ----EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV----VDFHWNASDPWTVVS 448 (496)
Q Consensus 393 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V----~~~~~~p~~~~l~~s 448 (496)
.+..|.+||+..... ..+. ...+...+ ..++|+|+|..+++.
T Consensus 274 ~~~~~~~~i~~~d~~~g~~-------------~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 274 NRAQNVSILTLCDATTGVC-------------TKKH-EDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp ETTSCEEEEEEEETTTCCE-------------EEEE-EEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred cCCCCeEEEEEEeCCCCcc-------------eEEE-EeccCCEEeccCCCceEcCCCCeEEEE
Confidence 235799999987411 1111 11233333 378999999987765
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=2.9e-20 Score=195.13 Aligned_cols=256 Identities=11% Similarity=0.065 Sum_probs=176.6
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC-----CCCccccCCCCCCCCceEEecCCC------------
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-----QPNRHAVLGATNSRPDLILTGHQD------------ 196 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~l~~h~~------------ 196 (496)
..+..|.+.+.+++|+| +++.||++ .++.|++||+.+ +... .....+..
T Consensus 114 ~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~------------~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 114 TYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAI------------AVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCE------------ESCSCCBTTEEESSCCGGGC
T ss_pred EEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcE------------EeccCCCCCeEcccchhhhh
Confidence 34456778899999999 88888885 678999999987 5221 11111111
Q ss_pred -CcceeeeecCCCCceEEec---------------------------------CCCcEEEEecCCccccccCCccccccC
Q 010997 197 -NAEFALAMCPTEPYVLSGG---------------------------------KDKSVVLWSIQDHITSSATDPATAKSA 242 (496)
Q Consensus 197 -~~v~~l~~~p~~~~l~sg~---------------------------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 242 (496)
..+.++.|+|||++|++++ .+..|.+||+.++....
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~---------- 249 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY---------- 249 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE----------
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe----------
Confidence 0257899999999999887 33567777776543210
Q ss_pred CCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC-----eEEEEEccCCCcccee
Q 010997 243 GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTSPVIK 317 (496)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~ 317 (496)
+.....|...+.+++|+|++ ..|++++.++ .|.+||+.+++. ...
T Consensus 250 ----------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~ 299 (706)
T 2z3z_A 250 ----------------------------LQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF-VRT 299 (706)
T ss_dssp ----------------------------CCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE-EEE
T ss_pred ----------------------------eccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce-eeE
Confidence 00112466789999999999 6777776665 899999988731 112
Q ss_pred ee-ccCCC---CeEEEEecC-CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE-EEEcCCCCCEEEEE
Q 010997 318 VE-KAHDA---DLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSS 391 (496)
Q Consensus 318 ~~-~~~~~---~v~~i~~sp-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~~~~llas~ 391 (496)
.. ..+.. .+.+++|+| .++.++++++.||.++||++... +..+..+..|...+.. ++|+|+++.|++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-----CCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 21 12222 346789998 24678999999999999988721 4667778888888887 89999999877777
Q ss_pred eCCC----cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 392 AEDG----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 392 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
+.++ .|..||+... . ...+ .|...+.+++|+|++.+++++++.+ ..-+.|++|++
T Consensus 375 ~~~~~~~~~l~~~d~~~~-~---------------~~~l-~~~~~~~~~~~spdg~~l~~~~~~~----~~p~~i~l~d~ 433 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGG-K---------------TKDL-TPESGMHRTQLSPDGSAIIDIFQSP----TVPRKVTVTNI 433 (706)
T ss_dssp SSSCTTCBEEEEEETTCC-C---------------CEES-CCSSSEEEEEECTTSSEEEEEEECS----SCSCEEEEEES
T ss_pred cCCCCceEEEEEEEcCCC-C---------------ceec-cCCCceEEEEECCCCCEEEEEecCC----CCCcEEEEEEC
Confidence 7665 5666666552 1 1111 2556789999999999887766533 23367999998
Q ss_pred CC
Q 010997 468 SD 469 (496)
Q Consensus 468 ~~ 469 (496)
..
T Consensus 434 ~~ 435 (706)
T 2z3z_A 434 GK 435 (706)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=1.1e-20 Score=198.32 Aligned_cols=280 Identities=11% Similarity=0.157 Sum_probs=183.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
+...|.+++|+| ++.++++ . ++.|++||+.++ +. ..+..+.. .+.+++|+|+|++|+++ .|+
T Consensus 80 ~~~~v~~~~~sp-d~~~~~~-~-~~~i~~~d~~~~------------~~-~~l~~~~~-~~~~~~~SpdG~~la~~-~~~ 141 (706)
T 2z3z_A 80 DAFPSFRTLDAG-RGLVVLF-T-QGGLVGFDMLAR------------KV-TYLFDTNE-ETASLDFSPVGDRVAYV-RNH 141 (706)
T ss_dssp --CCCEEEEETT-TTEEEEE-E-TTEEEEEETTTT------------EE-EEEECCTT-CCTTCEECTTSSEEEEE-ETT
T ss_pred cccCceeEEECC-CCeEEEE-E-CCEEEEEECCCC------------ce-EEccCCcc-cccCCcCCCCCCEEEEE-ECC
Confidence 346799999999 5555544 3 489999999876 22 23444544 57899999999999985 689
Q ss_pred cEEEEecCC-----ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 219 SVVLWSIQD-----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 219 ~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
.|.+||+.+ +........ ....+.. .. .....+...+.++.|+|++ ..
T Consensus 142 ~i~v~~~~~~~~~~g~~~~~~~~-------~~~~~~~-----------------g~--~~~~ee~~~~~~~~~SpDg-~~ 194 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRAIAVTID-------GTETLVY-----------------GQ--AVHQREFGIEKGTFWSPKG-SC 194 (706)
T ss_dssp EEEEEECBCTTSCCCCCEESCSC-------CBTTEEE-----------------SS--CCGGGCTTCCCSEEECTTS-SE
T ss_pred eEEEEecCcccccCCCcEEeccC-------CCCCeEc-----------------cc--chhhhhcCCCceEEECCCC-CE
Confidence 999999986 432211100 0000000 00 0112233457899999999 67
Q ss_pred EEEEc---------------------------------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997 294 FCSVG---------------------------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 340 (496)
Q Consensus 294 l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 340 (496)
|++++ .+..|.+||+.+++...+.....|...+.+++|+| ++..|+
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~ 273 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILY 273 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEE
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEE
Confidence 77776 44789999998876221211224667899999999 999999
Q ss_pred EEcCCC-----cEEEEeCCCCCCCCCCCCceEec--cCCC---CEEEEEEcC--CCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997 341 TGSADN-----SVRMFDRRNLTSNGVGSPINKFE--GHSA---AVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKK 408 (496)
Q Consensus 341 sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~--~h~~---~i~~l~~sp--~~~~llas~~~dg~i~iwd~~~~~~~ 408 (496)
+++.++ .|.+||+.+ +.....+. .+.. .+..++|+| +|+ ++++++.|+.++||++...+
T Consensus 274 ~~~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~-- 344 (706)
T 2z3z_A 274 VAEVNRAQNECKVNAYDAET------GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTG-- 344 (706)
T ss_dssp EEEECTTSCEEEEEEEETTT------CCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTS--
T ss_pred EEEeCCCCCeeEEEEEECCC------CceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCC--
Confidence 887775 899999987 42333332 1222 346789999 998 56788889999999886321
Q ss_pred cCCCCCCCCCCCeeEEEecCCCCCcce-EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997 409 VEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 487 (496)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~ 487 (496)
..+..+.+|...+.. ++|+|++..++++++++ +.....|..|++.. ++ +..+. |..
T Consensus 345 ------------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~---~~~~~~l~~~d~~~------~~-~~~l~-~~~ 401 (706)
T 2z3z_A 345 ------------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA---SPLERHFYCIDIKG------GK-TKDLT-PES 401 (706)
T ss_dssp ------------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSS---CTTCBEEEEEETTC------CC-CEESC-CSS
T ss_pred ------------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC---CCceEEEEEEEcCC------CC-ceecc-CCC
Confidence 234445667777776 79999998888766654 11112666666652 22 22222 566
Q ss_pred eEEEeccCC
Q 010997 488 HVISCTSKP 496 (496)
Q Consensus 488 ~v~~~~~sP 496 (496)
.+.+++|||
T Consensus 402 ~~~~~~~sp 410 (706)
T 2z3z_A 402 GMHRTQLSP 410 (706)
T ss_dssp SEEEEEECT
T ss_pred ceEEEEECC
Confidence 788899987
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=1.4e-20 Score=192.89 Aligned_cols=234 Identities=8% Similarity=0.008 Sum_probs=169.1
Q ss_pred CCceeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC--
Q 010997 140 PGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-- 216 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-- 216 (496)
..+|++++|+| |++.||+++. ||++.||++.++ . ...+..|....+.+++|+|+ +++++++.
T Consensus 21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g------------~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~ 85 (582)
T 3o4h_A 21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGG------------E-TVKLNREPINSVLDPHYGVG-RVILVRDVSK 85 (582)
T ss_dssp HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETT------------E-EEECCSSCCSEECEECTTCS-EEEEEEECST
T ss_pred ccchheeecCC-CCCeEEEEEccCCceeEEEEcCC------------C-cEeeecccccccccccCCCC-eEEEEeccCC
Confidence 44699999999 8889998877 999999998554 2 23344555336899999999 77777765
Q ss_pred -CCcEEEEecCC--ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 217 -DKSVVLWSIQD--HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 217 -Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
+....+|.+.. .... ..+... ..+...+|+|++...
T Consensus 86 g~~~~~l~~~~~~~~g~~----------------------------------------~~l~~~-~~~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 86 GAEQHALFKVNTSRPGEE----------------------------------------QRLEAV-KPMRILSGVDTGEAV 124 (582)
T ss_dssp TSCCEEEEEEETTSTTCC----------------------------------------EECTTS-CSBEEEEEEECSSCE
T ss_pred CCcceEEEEEeccCCCcc----------------------------------------ccccCC-CCceeeeeCCCCCeE
Confidence 56677776642 1100 111111 123356888888554
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC----CcEEEEeCCCCCCCCCCCCceEec
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
+++.+.++.+.+||+.+++ ..... .+.. .+++|+| ++.+|++++.+ +.|++||+.+ +. +..+.
T Consensus 125 ~~~s~~~~~~~l~d~~~g~--~~~l~-~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~------g~-~~~l~ 191 (582)
T 3o4h_A 125 VFTGATEDRVALYALDGGG--LRELA-RLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSS------GG-LRVFD 191 (582)
T ss_dssp EEEEECSSCEEEEEEETTE--EEEEE-EESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTT------CC-CEEEC
T ss_pred EEEecCCCCceEEEccCCc--EEEee-cCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCC------CC-ceEee
Confidence 4444444555599998876 22222 2333 8899999 99999988877 7899999987 33 45778
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE--------ec
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH--------WN 439 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~--------~~ 439 (496)
.|...+..++|||||+.| +++..++ .|++||+... ... ...+|...+..++ |+
T Consensus 192 ~~~~~~~~~~~SpDG~~l-~~~~~~~~~~i~~~d~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~s 254 (582)
T 3o4h_A 192 SGEGSFSSASISPGMKVT-AGLETAREARLVTVDPRDG---------------SVE-DLELPSKDFSSYRPTAITWLGYL 254 (582)
T ss_dssp CSSCEEEEEEECTTSCEE-EEEECSSCEEEEEECTTTC---------------CEE-ECCCSCSHHHHHCCSEEEEEEEC
T ss_pred cCCCccccceECCCCCEE-EEccCCCeeEEEEEcCCCC---------------cEE-EccCCCcChhhhhhccccceeEc
Confidence 899999999999999965 5777888 8999999874 222 4567777788888 99
Q ss_pred CCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 440 ASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 440 p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
|++ .++++++.| |+++||++
T Consensus 255 pdg-~~~~~~~~~-------g~~~l~~~ 274 (582)
T 3o4h_A 255 PDG-RLAVVARRE-------GRSAVFID 274 (582)
T ss_dssp TTS-CEEEEEEET-------TEEEEEET
T ss_pred CCC-cEEEEEEcC-------CcEEEEEE
Confidence 999 788877665 99999999
No 149
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=1.3e-18 Score=167.39 Aligned_cols=255 Identities=12% Similarity=0.069 Sum_probs=164.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC-CCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc--eEEec
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE-AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY--VLSGG 215 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~--l~sg~ 215 (496)
....+..++|+| ++++|++++.+ .|.+|++. ++ +..............+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g------------~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPT------------EIVHEASHPIGGHPRANDADTNTRAIFLLAAK 103 (365)
T ss_dssp TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETT------------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECS
T ss_pred CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCC------------CEEEeeEeecCCCCccEEECCCCCEEEEEEec
Confidence 445788999999 88888888887 99999986 44 1111111111112567999999994 55654
Q ss_pred -------------CCCcEEEEecCC-ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCc
Q 010997 216 -------------KDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDT 280 (496)
Q Consensus 216 -------------~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~ 280 (496)
.+|++.+|++.. +... ..+..+. .+...
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-------------------------------------~~~~~~~~~~~~~ 146 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLE-------------------------------------KNVQNYEYQENTG 146 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEE-------------------------------------EEEEEEECCTTCC
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCc-------------------------------------ceEeeEEeCCCCc
Confidence 689999999863 2110 0001111 24567
Q ss_pred eeEEEEccCCCceEEEE-cCCCeEEEEEcc-CCCccceeeec--cCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCC
Q 010997 281 VEDVTFCPSSAQEFCSV-GDDSCLILWDAR-VGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRN 355 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~-~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~ 355 (496)
+.+++|+|++ .+++++ ..++.|.+||+. +++........ .|...+..++|+| +++++++++ .++.|.+|++..
T Consensus 147 ~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 147 IHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeC
Confidence 8999999999 455554 457899999998 55521122222 2466799999999 888877766 478999998763
Q ss_pred CCCCCCCCCc---eE---ec----cCCC------CEEEEE-EcCCCCCEEEEEeCCC-----cEEEEECCCCCcccCCCC
Q 010997 356 LTSNGVGSPI---NK---FE----GHSA------AVLCVQ-WSPDKSSVFGSSAEDG-----LLNIWDYEKVGKKVEQGP 413 (496)
Q Consensus 356 ~~~~~~~~~~---~~---~~----~h~~------~i~~l~-~sp~~~~llas~~~dg-----~i~iwd~~~~~~~~~~~~ 413 (496)
.. +... .. +. +|.. .+..++ |+|+|++|+++...++ .|.+|++...++.
T Consensus 225 ~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~----- 295 (365)
T 1jof_A 225 AT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI----- 295 (365)
T ss_dssp TT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-----
T ss_pred CC----CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-----
Confidence 11 2321 11 21 2222 588999 9999997765543333 8999999632211
Q ss_pred CCCCCCCeeEE-EecCCCCCcceEEecC---CCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 414 RTTNYPAGLFF-QHAGHRDKVVDFHWNA---SDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 414 ~~~~~~~~~~~-~~~~h~~~V~~~~~~p---~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
..+. ....+...+..++|+| ++.+++++..+ ++.|+||++..
T Consensus 296 -------~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-------~~~v~v~~~~~ 341 (365)
T 1jof_A 296 -------EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------EGWLEIYRWKD 341 (365)
T ss_dssp -------EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-------SCEEEEEEEET
T ss_pred -------EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-------CCeEEEEEEch
Confidence 1111 1333455678899999 78877654333 38999999873
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=4.4e-20 Score=201.75 Aligned_cols=280 Identities=9% Similarity=0.005 Sum_probs=202.2
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
..+.+|.+.+.++.|++ + .++++++.+|.+.||.+.... .....+..|.. +..++|+|+|++|++
T Consensus 197 ~~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~~--~~~~~~SpDG~~la~ 261 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDG-----------KDLRKHTSFTD--YYPRHLNTDGRRILF 261 (1045)
T ss_dssp EEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTS-----------CSCEECCCCCS--SCEEEEEESSSCEEE
T ss_pred EECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCC-----------CcceEecCCCC--cceeeEcCCCCEEEE
Confidence 34478999999999998 5 677888889999999876431 22334555553 567899999999988
Q ss_pred ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc-cCCCc
Q 010997 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC-PSSAQ 292 (496)
Q Consensus 214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~ 292 (496)
+. ++.|.+||+...... .... ...........|...+.+++|+ |++ .
T Consensus 262 ~~-~~~i~~~d~~~~~l~-~l~~-----------------------------~~~~~~~~~~~~~~~v~~~~~S~pdG-~ 309 (1045)
T 1k32_A 262 SK-GGSIYIFNPDTEKIE-KIEI-----------------------------GDLESPEDRIISIPSKFAEDFSPLDG-D 309 (1045)
T ss_dssp EE-TTEEEEECTTTCCEE-ECCC-----------------------------CCCCBCCSEEEECGGGGEEEEEECGG-G
T ss_pred Ee-CCEEEEecCCceEee-eecc-----------------------------CcccccccccccccccceeeecCCCC-C
Confidence 84 899999998432111 0000 0000001223466789999999 999 6
Q ss_pred eEEEEcCCCeEEEEEccCCCccceeeeccCCC-CeEEEEecCCCCcEEEEEcCCCcEE-EEeCCCCCCCCCCCCceEecc
Q 010997 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGSADNSVR-MFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~sgs~dg~i~-iwd~~~~~~~~~~~~~~~~~~ 370 (496)
.+++++ ++.|.+|++..+. ...+..|.. .+..++|+ ++..|++++.++.+. +||+.. + ....+.+
T Consensus 310 ~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~------~-~~~~l~~ 376 (1045)
T 1k32_A 310 LIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRT------G-KAEKFEE 376 (1045)
T ss_dssp CEEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTT------C-CEEECCC
T ss_pred EEEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCC------C-CceEecC
Confidence 677776 7899999988765 233456666 89999999 688888888888888 889876 3 3445557
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
|...+..++|+|+|+. ||+++.++.|++||+.+. .......+|...|.+++|+|++.+++++..
T Consensus 377 ~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg---------------~~~~~~~~~~~~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 377 NLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETG---------------KPTVIERSREAMITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp CCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred CccceeeeEECCCCCE-EEEECCCCeEEEEECCCC---------------ceEEeccCCCCCccceEECCCCCeEEEEec
Confidence 8889999999999995 568888999999999874 233334578889999999999987765443
Q ss_pred CC--CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 451 DD--CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 451 ~d--~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
++ ...+..++.|++||+. .++ +..+..|...+.+++|+|
T Consensus 441 ~~~~~~~~~~~~~i~l~d~~------~g~-~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 441 LKHGETDGYVMQAIHVYDME------GRK-IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp ECSSTTCSCCEEEEEEEETT------TTE-EEECSCSSSBEEEEEECT
T ss_pred CccccccCCCCCeEEEEECC------CCc-EEEeeCCCcccCCceEcC
Confidence 21 0012334699999998 344 556677888888899987
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=7.8e-19 Score=167.80 Aligned_cols=238 Identities=12% Similarity=0.095 Sum_probs=172.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC--------cceeeeec
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--------AEFALAMC 205 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~--------~v~~l~~~ 205 (496)
...+.+...+..++|+|++..++++...++.|.+||..++ +....+..+... .+.+++|+
T Consensus 82 ~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (353)
T 3vgz_A 82 TQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG------------EVKGRLVLDDRKRTEEVRPLQPRELVAD 149 (353)
T ss_dssp EEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC------------CEEEEEESCCCCCCSSCCCCEEEEEEEE
T ss_pred EEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC------------eeEEEEecCCCccccccCCCCCceEEEC
Confidence 3444555668899999944446667777899999999887 333444443321 15789999
Q ss_pred CCCCceEEec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997 206 PTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 206 p~~~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
|+++++++++ .++.|.+||..++... ..+..+...+.+
T Consensus 150 ~dg~~l~~~~~~~~~~i~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~ 189 (353)
T 3vgz_A 150 DATNTVYISGIGKESVIWVVDGGNIKLK----------------------------------------TAIQNTGKMSTG 189 (353)
T ss_dssp TTTTEEEEEEESSSCEEEEEETTTTEEE----------------------------------------EEECCCCTTCCC
T ss_pred CCCCEEEEEecCCCceEEEEcCCCCceE----------------------------------------EEecCCCCccce
Confidence 9999777665 5889999999764321 233334455788
Q ss_pred EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCC
Q 010997 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTS 358 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~ 358 (496)
++|+|++ ..+++++.++.|.+||+.+++ ....... +...+..++|+| ++.++++++ .++.|.+||+.+
T Consensus 190 ~~~s~dg-~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~--- 262 (353)
T 3vgz_A 190 LALDSEG-KRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRN--- 262 (353)
T ss_dssp CEEETTT-TEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTT---
T ss_pred EEECCCC-CEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCC---
Confidence 9999999 678888889999999998876 3333322 456788999999 777655554 559999999988
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
++.+..+..... ..++|+|++.+++++...++.|.+||+.+. ..+..... ...+.+++|
T Consensus 263 ---~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~-~~~~~~~~~ 321 (353)
T 3vgz_A 263 ---GNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSY---------------KVVKTFDT-PTHPNSLAL 321 (353)
T ss_dssp ---CCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTT---------------EEEEEEEC-CSEEEEEEE
T ss_pred ---CcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCC---------------eEEEEEec-CCCCCeEEE
Confidence 666666664332 579999999988877778999999999874 33333333 336789999
Q ss_pred cCCCCcEEEEecC
Q 010997 439 NASDPWTVVSVSD 451 (496)
Q Consensus 439 ~p~~~~l~~s~s~ 451 (496)
+|++.+++++...
T Consensus 322 s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 322 SADGKTLYVSVKQ 334 (353)
T ss_dssp CTTSCEEEEEEEC
T ss_pred cCCCCEEEEEEcc
Confidence 9999988887664
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=9.4e-20 Score=173.85 Aligned_cols=231 Identities=8% Similarity=0.042 Sum_probs=158.9
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEe
Q 010997 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWS 224 (496)
Q Consensus 146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd 224 (496)
+++.+ ++.++++++.++.|++||+.++ +....+..+....+..++|+|+++++ +++..++.|.+||
T Consensus 5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d 71 (349)
T 1jmx_B 5 PALKA-GHEYMIVTNYPNNLHVVDVASD------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 71 (349)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEETTTT------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccccC-CCEEEEEeCCCCeEEEEECCCC------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEe
Confidence 45666 7889999999999999999887 44445554441135789999999855 5666789999999
Q ss_pred cCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-C-----CCceeEEEEccCCCceEEEEc
Q 010997 225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-H-----EDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~l~~~~~~~~~l~s~~ 298 (496)
+.++... ..+.. + ...+.+++|+|++ ..+++++
T Consensus 72 ~~t~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~ 110 (349)
T 1jmx_B 72 LDTCKNT----------------------------------------FHANLSSVPGEVGRSMYSFAISPDG-KEVYATV 110 (349)
T ss_dssp TTTTEEE----------------------------------------EEEESCCSTTEEEECSSCEEECTTS-SEEEEEE
T ss_pred CCCCcEE----------------------------------------EEEEcccccccccccccceEECCCC-CEEEEEc
Confidence 9765332 11111 1 2236789999999 5677766
Q ss_pred CC------------CeEEEEEccCCCcc-ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997 299 DD------------SCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (496)
Q Consensus 299 ~d------------g~i~iwd~~~~~~~-~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 365 (496)
.+ +.|.+||+.+++.. ..... .+...+.+++|+| ++. +++++. .|.+||+.+ +..+
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~------~~~~ 179 (349)
T 1jmx_B 111 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKT------GKYT 179 (349)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT-TSC-EEEESS--SEEEECTTT------CCEE
T ss_pred ccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC-CCc-EEEccC--cEEEEeCCC------Ccee
Confidence 54 89999999875411 12222 3445789999999 788 555543 499999987 3333
Q ss_pred eEeccC--------------------------------------------------------------------CCCEEE
Q 010997 366 NKFEGH--------------------------------------------------------------------SAAVLC 377 (496)
Q Consensus 366 ~~~~~h--------------------------------------------------------------------~~~i~~ 377 (496)
..+..+ ...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 333211 124567
Q ss_pred EEEcC-CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997 378 VQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 456 (496)
Q Consensus 378 l~~sp-~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg 456 (496)
++|+| ++..++ ++ ++.|.+||+.+. +.+.... ....+.+++|+|++.+++++ +.
T Consensus 260 ~~~sp~dg~~l~-~~--~~~v~~~d~~~~---------------~~~~~~~-~~~~~~~~~~s~dg~~l~~~-~~----- 314 (349)
T 1jmx_B 260 GLRSPKDPNQIY-GV--LNRLAKYDLKQR---------------KLIKAAN-LDHTYYCVAFDKKGDKLYLG-GT----- 314 (349)
T ss_dssp EEECSSCTTEEE-EE--ESEEEEEETTTT---------------EEEEEEE-CSSCCCEEEECSSSSCEEEE-SB-----
T ss_pred eEecCCCCCEEE-EE--cCeEEEEECccC---------------eEEEEEc-CCCCccceEECCCCCEEEEe-cC-----
Confidence 88889 998654 45 889999999874 2222222 22357899999999888753 33
Q ss_pred CCCCeEEEeecC
Q 010997 457 GGGGTLQIWRMS 468 (496)
Q Consensus 457 g~Dg~i~iw~~~ 468 (496)
++.|++||+.
T Consensus 315 --~~~v~v~d~~ 324 (349)
T 1jmx_B 315 --FNDLAVFNPD 324 (349)
T ss_dssp --SSEEEEEETT
T ss_pred --CCeEEEEecc
Confidence 4999999998
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=2.3e-19 Score=170.17 Aligned_cols=234 Identities=12% Similarity=0.093 Sum_probs=159.9
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC----CCcceeeeecCCCCceEEec--
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPTEPYVLSGG-- 215 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~----~~~v~~l~~~p~~~~l~sg~-- 215 (496)
.+..++|+|++..++++++.++.|.+||+.++ +....+.... ...+.+++|+|++++|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 102 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP 102 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTC------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCC------------CeEeeEEcCCcccccccccceEECCCCCEEEEEecc
Confidence 58899999943355677777899999999877 3333333211 11367899999999888885
Q ss_pred ----------CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997 216 ----------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (496)
Q Consensus 216 ----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (496)
.++.|.+||+.++... ..+.. ...+.+++
T Consensus 103 ~~~~~~~~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~ 141 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYDAETLSRR----------------------------------------KAFEA-PRQITMLA 141 (337)
T ss_dssp EEECSSCEEECCCEEEEEETTTTEEE----------------------------------------EEEEC-CSSCCCEE
T ss_pred cccccccccccCceEEEEECCCCcEE----------------------------------------EEEeC-CCCcceeE
Confidence 5799999999754321 22222 34577899
Q ss_pred EccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CC------------------
Q 010997 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN------------------ 346 (496)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg------------------ 346 (496)
|+|++ ..++++ ++.|.+||+.+++ .......+. ....+.|+| ++..++.++. ++
T Consensus 142 ~s~dg-~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 142 WARDG-SKLYGL--GRDLHVMDPEAGT--LVEDKPIQS-WEAETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp ECTTS-SCEEEE--SSSEEEEETTTTE--EEEEECSTT-TTTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred ECCCC-CEEEEe--CCeEEEEECCCCc--Eeeeeeccc-cCCCceeCC-CccEEeeeccCCCceeeeeeccccccccccc
Confidence 99999 556665 6889999998876 333333222 011237888 6665544433 33
Q ss_pred -----cEEEEeCCCCCCCCCCCC-ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCC
Q 010997 347 -----SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (496)
Q Consensus 347 -----~i~iwd~~~~~~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 420 (496)
.|.+||+.+ ++. ...+..+...+.+++|+|++.+++ ++ ++.|.+||+...
T Consensus 215 ~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~d~~~~--------------- 270 (337)
T 1pby_B 215 TAYRTGLLTMDLET------GEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKN--------------- 270 (337)
T ss_dssp GGEEEEEEEEETTT------CCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTT---------------
T ss_pred cccccceEEEeCCC------CCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEEECCCC---------------
Confidence 468999987 333 334455677889999999999755 44 789999999774
Q ss_pred eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+.+..... ...+.+++|+|++.+++++ + .|+.|++||+.
T Consensus 271 ~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~-------~~~~i~v~d~~ 309 (337)
T 1pby_B 271 ASIKRVPL-PHSYYSVNVSTDGSTVWLG-G-------ALGDLAAYDAE 309 (337)
T ss_dssp EEEEEEEC-SSCCCEEEECTTSCEEEEE-S-------BSSEEEEEETT
T ss_pred cCcceecC-CCceeeEEECCCCCEEEEE-c-------CCCcEEEEECc
Confidence 22333322 2457899999999877753 3 35999999998
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=3.7e-19 Score=194.50 Aligned_cols=233 Identities=7% Similarity=0.002 Sum_probs=173.0
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec-CCCCceEEecCCCc
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-PTEPYVLSGGKDKS 219 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~-p~~~~l~sg~~Dg~ 219 (496)
..+..++|+| +++.||.+. ++.|++||+...... .+.+. ..........|.. .+.+++|+ |+|++|++++ ++.
T Consensus 245 ~~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~-~l~~~-~~~~~~~~~~~~~-~v~~~~~S~pdG~~la~~~-~~~ 318 (1045)
T 1k32_A 245 TDYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKIE-KIEIG-DLESPEDRIISIP-SKFAEDFSPLDGDLIAFVS-RGQ 318 (1045)
T ss_dssp CSSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCEE-ECCCC-CCCBCCSEEEECG-GGGEEEEEECGGGCEEEEE-TTE
T ss_pred CCcceeeEcC-CCCEEEEEe-CCEEEEecCCceEee-eeccC-ccccccccccccc-ccceeeecCCCCCEEEEEE-cCE
Confidence 3577889999 788888774 889999998433111 11000 0000001122333 58899999 9999999888 889
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC-ceeEEEEccCCCceEEEEc
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-TVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~ 298 (496)
|.+|++..+.. ..+..|.. .+..++|+ ++ ..|++++
T Consensus 319 i~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~s-dg-~~l~~~s 355 (1045)
T 1k32_A 319 AFIQDVSGTYV-----------------------------------------LKVPEPLRIRYVRRGGD-TK-VAFIHGT 355 (1045)
T ss_dssp EEEECTTSSBE-----------------------------------------EECSCCSCEEEEEECSS-SE-EEEEEEE
T ss_pred EEEEcCCCCce-----------------------------------------EEccCCCcceEEeeeEc-CC-CeEEEEE
Confidence 99999865321 23445666 89999999 87 6788888
Q ss_pred CCCeEE-EEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997 299 DDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (496)
Q Consensus 299 ~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~ 377 (496)
.++.+. +||+..+. .. .+..|...+..++|+| ++.+|++++.++.|++||+.+ +.....+.+|...+.+
T Consensus 356 ~~~~l~~~~d~~~~~--~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~t------g~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 356 REGDFLGIYDYRTGK--AE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET------GKPTVIERSREAMITD 425 (1045)
T ss_dssp TTEEEEEEEETTTCC--EE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEEEEECSSSCCCC
T ss_pred CCCceEEEEECCCCC--ce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCC------CceEEeccCCCCCccc
Confidence 888888 99988765 22 3337788999999999 999999999999999999987 6666666689999999
Q ss_pred EEEcCCCCCEEEEEeCC----------CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 378 VQWSPDKSSVFGSSAED----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 378 l~~sp~~~~llas~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
++|+|+|++|+ +++.+ +.|++||+... . ...+.+|...+..++|+|++.+++.
T Consensus 426 ~~~SpDG~~la-~~~~~~~~~~~~~~~~~i~l~d~~~g---------------~-~~~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 426 FTISDNSRFIA-YGFPLKHGETDGYVMQAIHVYDMEGR---------------K-IFAATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp EEECTTSCEEE-EEEEECSSTTCSCCEEEEEEEETTTT---------------E-EEECSCSSSBEEEEEECTTSCEEEE
T ss_pred eEECCCCCeEE-EEecCccccccCCCCCeEEEEECCCC---------------c-EEEeeCCCcccCCceEcCCCCEEEE
Confidence 99999999754 55443 48999999873 2 4456678888899999999987764
Q ss_pred Ee
Q 010997 448 SV 449 (496)
Q Consensus 448 s~ 449 (496)
..
T Consensus 489 ~s 490 (1045)
T 1k32_A 489 LS 490 (1045)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=1.4e-18 Score=165.97 Aligned_cols=258 Identities=11% Similarity=0.112 Sum_probs=164.3
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEEecCCccccccCCccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPAT 238 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~ 238 (496)
++.|.+|++....... ... ....+.. .+..++|+|+|+ |++++. ++.|.+||+.++..
T Consensus 15 ~~~i~v~~~d~~tg~~--------~~~-~~~~~~~-~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------- 75 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTL--------TND-GLLAATQ-NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------- 75 (347)
T ss_dssp CCEEEEEEEETTTTEE--------EEE-EEEEECS-CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--------
T ss_pred CCCEEEEEEcCCCCeE--------EEe-eeeeccC-CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--------
Confidence 5568888776531110 111 2223333 357899999999 665554 68999999964321
Q ss_pred cccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc-CCCeEEEEEccCC-Cccce
Q 010997 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVG-TSPVI 316 (496)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~ 316 (496)
..+..+..+...+..++|+|++ .+|++++ .++.|.+||+... ....+
T Consensus 76 ------------------------------~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~ 124 (347)
T 3hfq_A 76 ------------------------------HKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLT 124 (347)
T ss_dssp ------------------------------EEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred ------------------------------EEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence 1123334466778899999999 5555554 7899999999643 21112
Q ss_pred eeecc---------CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC--ceEeccC-CCCEEEEEEcCCC
Q 010997 317 KVEKA---------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKFEGH-SAAVLCVQWSPDK 384 (496)
Q Consensus 317 ~~~~~---------~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--~~~~~~h-~~~i~~l~~sp~~ 384 (496)
..... +...+.+++|+| ++.++++...++.|.+||+... +.. +..+..+ ...+..++|+|+|
T Consensus 125 ~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~-----g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 125 DTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDA-----GQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp EEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTT-----SCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred ceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCC-----CcEEEeeeEEcCCCCCCceEEECCCC
Confidence 22211 123488999999 7787787888899999999831 222 2222222 3367899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC------CCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR------DKVVDFHWNASDPWTVVSVSDDCDSTGG 458 (496)
Q Consensus 385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~V~~~~~~p~~~~l~~s~s~d~~sgg~ 458 (496)
+++++++..++.|.+|++...... ...+....... ..+..++|+|++.+++++...+
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~------ 261 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGA-----------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY------ 261 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTE-----------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT------
T ss_pred CEEEEEeCCCCEEEEEEecCCCCc-----------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC------
Confidence 988777788999999998752111 01122222211 3478899999999887766544
Q ss_pred CCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 459 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 459 Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.|.+|++... .....+..+..+...+..++|+|
T Consensus 262 -~~v~v~~~~~~---g~~~~~~~~~~~~~~~~~~~~sp 295 (347)
T 3hfq_A 262 -NTLAVFAVTAD---GHLTLIQQISTEGDFPRDFDLDP 295 (347)
T ss_dssp -TEEEEEEECGG---GCEEEEEEEECSSSCCCEEEECT
T ss_pred -CEEEEEEECCC---CcEEEeEEEecCCCCcCeEEECC
Confidence 89999999721 01123334444445567888876
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=191.09 Aligned_cols=242 Identities=8% Similarity=0.116 Sum_probs=162.1
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--CcceeeeecCCCCceEEecC------
Q 010997 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGK------ 216 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--~~v~~l~~~p~~~~l~sg~~------ 216 (496)
.++|+| ++.+++++ .||.|++||+.++ +....+.+|.. ..+.+++|+|||++|++++.
T Consensus 20 ~~~~s~-dg~~~~~~-~d~~i~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 20 FPNWIS-GQEYLHQS-ADNNIVLYNIETG------------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR 85 (719)
T ss_dssp CCEESS-SSEEEEEC-TTSCEEEEESSSC------------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred ccEECC-CCeEEEEc-CCCCEEEEEcCCC------------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEE
Confidence 678999 77666654 6999999999987 34444544432 12789999999999998876
Q ss_pred ---CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 217 ---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 217 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
|+.|++||+.++..... ..+ ...+..++|+|+| ..
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~--------------------------------------~~l---~~~~~~~~~SPDG-~~ 123 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRG--------------------------------------NEL---PRPIQYLCWSPVG-SK 123 (719)
T ss_dssp SCEEEEEEEEETTTTEECCS--------------------------------------SCC---CSSBCCEEECSST-TC
T ss_pred eecceEEEEEECCCCccccc--------------------------------------eec---CcccccceECCCC-CE
Confidence 78999999986543100 001 1357889999999 66
Q ss_pred EEEEcCCCeEEEEEccCCCccceeeeccCCCCe-----------------EEEEecCCCCcEEEEEcCCC----------
Q 010997 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-----------------HCVDWNPLDDNLILTGSADN---------- 346 (496)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------------~~i~~sp~~~~~l~sgs~dg---------- 346 (496)
|+.+. ++.|++||+.++... .....++...| .+++|+| ++.+||+++.|.
T Consensus 124 la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 124 LAYVY-QNNIYLKQRPGDPPF-QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp EEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEE
T ss_pred EEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeec
Confidence 77765 789999999877621 11112332222 4899999 999999987652
Q ss_pred ------------------------cEEEEeCCCCCCCCCCCCc--------eEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997 347 ------------------------SVRMFDRRNLTSNGVGSPI--------NKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (496)
Q Consensus 347 ------------------------~i~iwd~~~~~~~~~~~~~--------~~~~~h~~~i~~l~~sp~~~~llas~~~d 394 (496)
.|++||+.+ +... ..+.+|...+.+++|+|++. ++++....
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~ 273 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKR 273 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEES
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECCC------CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecc
Confidence 788999987 3322 22446888899999999976 55564322
Q ss_pred ----CcEEEEE----CCCCCcccCCCCCCCCCCCeeE-EEecCCCCCcc-----eEEecCCCCcEEEEecCCCCCCCCCC
Q 010997 395 ----GLLNIWD----YEKVGKKVEQGPRTTNYPAGLF-FQHAGHRDKVV-----DFHWNASDPWTVVSVSDDCDSTGGGG 460 (496)
Q Consensus 395 ----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~-----~~~~~p~~~~l~~s~s~d~~sgg~Dg 460 (496)
..|.+|| +.+. +.. .++ ....+|...|. .++|+|++..+++..++. +...
T Consensus 274 ~~~~~~l~~~d~~~~~~~g-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~g~~ 337 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTW-DCP-----------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK----DGYK 337 (719)
T ss_dssp STTEEEEEEEEECSSSSSE-ECC-----------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT----TSCE
T ss_pred ccCeEEEEEEcccCCCCCC-ceE-----------EEEecccccCCceEccccCCccEECCCCCeEEEEEEcc----CCce
Confidence 2488889 6553 111 111 01135666666 889999998776643322 1134
Q ss_pred eEEEeecC
Q 010997 461 TLQIWRMS 468 (496)
Q Consensus 461 ~i~iw~~~ 468 (496)
.|.+|++.
T Consensus 338 ~l~~~~~~ 345 (719)
T 1z68_A 338 HIHYIKDT 345 (719)
T ss_dssp EEEEESSC
T ss_pred EEEEEECC
Confidence 67777776
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=8.2e-19 Score=184.45 Aligned_cols=280 Identities=14% Similarity=0.107 Sum_probs=174.1
Q ss_pred ceeEEEecCCCCcEEEEEeC---------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 142 EVNRIRELPQNTKIVATHTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.|.+++|+| ++++||+++. ++.|++||+.++.... ...+ .. .+..++|+|||++|+
T Consensus 61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~----------~~~l---~~-~~~~~~~SPDG~~la 125 (719)
T 1z68_A 61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR----------GNEL---PR-PIQYLCWSPVGSKLA 125 (719)
T ss_dssp TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----------SSCC---CS-SBCCEEECSSTTCEE
T ss_pred ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCcccc----------ceec---Cc-ccccceECCCCCEEE
Confidence 489999999 8888988876 7899999998872100 0011 12 478999999999999
Q ss_pred EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce---------eE
Q 010997 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV---------ED 283 (496)
Q Consensus 213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~ 283 (496)
++. |+.|++||+.++........ ......+.++...| .+
T Consensus 126 ~~~-~~~i~~~~~~~g~~~~l~~~-------------------------------~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 126 YVY-QNNIYLKQRPGDPPFQITFN-------------------------------GRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp EEE-TTEEEEESSTTSCCEECCCC-------------------------------CBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred EEE-CCeEEEEeCCCCCcEEEecC-------------------------------CCcCCeEcccccceeeeecccCccc
Confidence 886 88999999976543211100 00011233443333 58
Q ss_pred EEEccCCCceEEEEcCCC----------------------------------eEEEEEccCCCcc---ce---eeeccCC
Q 010997 284 VTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSP---VI---KVEKAHD 323 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~---~~---~~~~~~~ 323 (496)
++|+|+| ..|++++.|. .|++||+.++... .+ ..+..|.
T Consensus 174 ~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 174 LWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp EEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred EEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 9999999 6777776542 7889999876520 00 1123578
Q ss_pred CCeEEEEecCCCCcEEEEEcCC----CcEEEEe----CCCCCCCCCCCCceEe----ccCCCCEE-----EEEEcCCCCC
Q 010997 324 ADLHCVDWNPLDDNLILTGSAD----NSVRMFD----RRNLTSNGVGSPINKF----EGHSAAVL-----CVQWSPDKSS 386 (496)
Q Consensus 324 ~~v~~i~~sp~~~~~l~sgs~d----g~i~iwd----~~~~~~~~~~~~~~~~----~~h~~~i~-----~l~~sp~~~~ 386 (496)
..+..++|+| ++.++++.... ..|.+|| +.+ +.....+ .+|...+. .+.|+|+|+.
T Consensus 253 ~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 253 YYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT------WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp EEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS------EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred ceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC------CceEEEEecccccCCceEccccCCccEECCCCCe
Confidence 8899999999 78777774432 2488899 665 3443333 35666666 8899999997
Q ss_pred EEE-EEeCCCc--EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEE
Q 010997 387 VFG-SSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ 463 (496)
Q Consensus 387 lla-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~ 463 (496)
++. ++..+|. |.+||+.... ...+..+...|..+.++ ++..+++++... +..++.++
T Consensus 326 l~~~~~~~~g~~~l~~~~~~~~~----------------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~---~~~~~~~~ 385 (719)
T 1z68_A 326 YYKIFSDKDGYKHIHYIKDTVEN----------------AIQITSGKWEAINIFRV-TQDSLFYSSNEF---EEYPGRRN 385 (719)
T ss_dssp EEEEEECTTSCEEEEEESSCSTT----------------CEECSCSSSCEEEEEEE-CSSEEEEEESCG---GGCTTCBE
T ss_pred EEEEEEccCCceEEEEEECCCCc----------------eEecccCceEEEEEEEE-eCCEEEEEEecC---CCCCceEE
Confidence 654 3445664 5566665421 12233445557777777 788877766540 01247899
Q ss_pred EeecCCCCcCCchHHHH-HHHhccceEEEeccCC
Q 010997 464 IWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP 496 (496)
Q Consensus 464 iw~~~~~~~~~~~~~~~-~l~~h~~~v~~~~~sP 496 (496)
+|.+....-....+.+. .+.+|...+..++|+|
T Consensus 386 l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 386 IYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD 419 (719)
T ss_dssp EEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred EEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence 99876210000001111 1333555666676665
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.80 E-value=1.2e-18 Score=165.12 Aligned_cols=246 Identities=12% Similarity=0.114 Sum_probs=167.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC-cceeeeecCCCCce-EEecCCCcEEEEecCCcccc
Q 010997 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-AEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~-~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~ 231 (496)
++|++++.++.|.+||+.++ +....+...... .+.+++|+|+++++ ++++.++.|.+||+.++...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred cEEEEcCCCCeEEEEECCCC------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE
Confidence 57899999999999999877 334444432211 25789999999765 56677899999999765321
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-c----CCCceeEEEEccCCCceEEEEc--------
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G----HEDTVEDVTFCPSSAQEFCSVG-------- 298 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----h~~~v~~l~~~~~~~~~l~s~~-------- 298 (496)
..+. + |...+.+++|+|++ ..+++++
T Consensus 70 ----------------------------------------~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 70 ----------------------------------------GRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELT 108 (337)
T ss_dssp ----------------------------------------EEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSS
T ss_pred ----------------------------------------eeEEcCCcccccccccceEECCCC-CEEEEEecccccccc
Confidence 1111 1 12256789999999 5666664
Q ss_pred ----CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 299 ----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 299 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
.++.|.+||+.+++ ...... ....+.+++|+| ++.+|+++ ++.|.+||+.+ +..+..+..+...
T Consensus 109 ~~~~~~~~i~v~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~------~~~~~~~~~~~~~ 176 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLS--RRKAFE-APRQITMLAWAR-DGSKLYGL--GRDLHVMDPEA------GTLVEDKPIQSWE 176 (337)
T ss_dssp CEEECCCEEEEEETTTTE--EEEEEE-CCSSCCCEEECT-TSSCEEEE--SSSEEEEETTT------TEEEEEECSTTTT
T ss_pred cccccCceEEEEECCCCc--EEEEEe-CCCCcceeEECC-CCCEEEEe--CCeEEEEECCC------CcEeeeeeccccC
Confidence 57999999998766 333332 355688999999 88877777 68999999988 5666666544311
Q ss_pred EEEEEEcCCCCCEEEEEeCCC-----------------------cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDG-----------------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 431 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 431 (496)
..+.|+|++..+++++..++ .|.+||+..... . ......+..
T Consensus 177 -~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-------------~-~~~~~~~~~ 241 (337)
T 1pby_B 177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-------------A-MREVRIMDV 241 (337)
T ss_dssp -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-------------E-EEEEEECSS
T ss_pred -CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc-------------e-EeecCCCCC
Confidence 13378999987665554444 368899877411 1 233445666
Q ss_pred CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.+.+++|+|++.+++++ ++.|++||+. +++.+..+..+ ..+.+++|+|
T Consensus 242 ~~~~~~~s~dg~~l~~~----------~~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~s~ 289 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA----------YNVLESFDLE------KNASIKRVPLP-HSYYSVNVST 289 (337)
T ss_dssp CEEEEEECTTSSEEEEE----------ESEEEEEETT------TTEEEEEEECS-SCCCEEEECT
T ss_pred ceeeEEECCCCCEEEEe----------CCeEEEEECC------CCcCcceecCC-CceeeEEECC
Confidence 78899999999887754 3899999998 34443333322 3456777775
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=6.6e-18 Score=163.73 Aligned_cols=255 Identities=13% Similarity=0.109 Sum_probs=160.4
Q ss_pred EecCCCceeE-----EEecCCCCcEEEEEeC-CC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997 136 TIIHPGEVNR-----IRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (496)
Q Consensus 136 ~~~h~~~V~~-----l~~~p~~~~~lat~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~ 207 (496)
+..|.+.+.. .+|+| +++.||.++. +| .|.+||+.++ +......++.. .+.++.|+|+
T Consensus 26 lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g------------~~~~lt~~~~~-~~~~~~~spd 91 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQ------------VATQLTEGRGD-NTFGGFLSPD 91 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTC------------EEEECCCSSCB-CSSSCEECTT
T ss_pred ecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCC------------ceEEeeeCCCC-CccceEEcCC
Confidence 3445555555 78999 7888887776 67 4888898876 33333344444 4557899999
Q ss_pred CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE--
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT-- 285 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-- 285 (496)
+++|+.++.++.|.+||+.++... ..+..+...+....
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~~----------------------------------------~~~~~~~~~~~~~~~~ 131 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEEN----------------------------------------VVYQVPAEWVGYGTWV 131 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEE----------------------------------------EEEECCTTEEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcce----------------------------------------eeeechhhccccccee
Confidence 999999999999999999865321 22333444443333
Q ss_pred EccCCCceEEE----------------------EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc
Q 010997 286 FCPSSAQEFCS----------------------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 343 (496)
Q Consensus 286 ~~~~~~~~l~s----------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs 343 (496)
++|++ .+++. ...+..|.+||+.+++ ...+..+...+..++|+|.++..|+..+
T Consensus 132 ~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~sp~dg~~l~~~~ 207 (388)
T 3pe7_A 132 ANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---STVILQENQWLGHPIYRPYDDSTVAFCH 207 (388)
T ss_dssp ECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---eEEeecCCccccccEECCCCCCEEEEEE
Confidence 47877 45543 2244789999998876 2333456678999999994566676665
Q ss_pred CC------CcEEEEeCCCCCCCCCCCCceEeccCC--CCEEEEEEcCCCCCEEEEEeCCC----cEEEEECCCCCcccCC
Q 010997 344 AD------NSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDG----LLNIWDYEKVGKKVEQ 411 (496)
Q Consensus 344 ~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~--~~i~~l~~sp~~~~llas~~~dg----~i~iwd~~~~~~~~~~ 411 (496)
.+ ..|.++|+.. .....+..+. ..+..++|+|+|+.|+..+..++ .|.+||+.....
T Consensus 208 ~~~~~~~~~~l~~~d~~~-------~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---- 276 (388)
T 3pe7_A 208 EGPHDLVDARMWLINEDG-------TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN---- 276 (388)
T ss_dssp CSCTTTSSCSEEEEETTS-------CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE----
T ss_pred ecCCCCCcceEEEEeCCC-------CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce----
Confidence 43 3788888764 3344554444 35788999999997644443322 399999987421
Q ss_pred CCCCCCCCCeeEEEecCCCC---CcceEEecCCCCcEEEEecCCC-CCCCCCCeEEEeecC
Q 010997 412 GPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDPWTVVSVSDDC-DSTGGGGTLQIWRMS 468 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~h~~---~V~~~~~~p~~~~l~~s~s~d~-~sgg~Dg~i~iw~~~ 468 (496)
..+....++.. ....++|+|+|..++++..+.. .+++.+..|++|++.
T Consensus 277 ---------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 277 ---------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp ---------EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred ---------EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 23333333111 1233579999998876543210 012446799999998
No 160
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=3.5e-16 Score=148.00 Aligned_cols=250 Identities=13% Similarity=0.136 Sum_probs=173.7
Q ss_pred CCceeEEEecCCCCcEEEEEeCC------------------------CcEEEEeCCCCCCccccCCCCCCCCceEEe-cC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDS------------------------PDVLIWDVEAQPNRHAVLGATNSRPDLILT-GH 194 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h 194 (496)
-+.|..|+++| +++++++...+ +.|.+||..++ +....+. ++
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~~~ 89 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA------------EILQSSGKNL 89 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC------------CEEEEECTTT
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC------------eEEeccCCCc
Confidence 35799999999 78888888877 47999998776 2222332 23
Q ss_pred CCCcceeeeecCCCCceEEecCCCcEEEEecCCcc-ccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997 195 QDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI-TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (496)
Q Consensus 195 ~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (496)
-. ...+++++|+|+++++...++.|++||..... ......... .. ..
T Consensus 90 ~~-~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~---~~----------------------------g~ 137 (329)
T 3fvz_A 90 FY-LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM---QP----------------------------GS 137 (329)
T ss_dssp CS-SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT---BC----------------------------CC
T ss_pred cC-CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC---CC----------------------------CC
Confidence 23 46899999999988888889999999986431 100000000 00 00
Q ss_pred eecCCCceeEEEEcc-CCCceEEEEc-CCCeEEEEEccCCCccceeeecc----------CCCCeEEEEecCCCCcEEEE
Q 010997 274 YNGHEDTVEDVTFCP-SSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILT 341 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~-~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~i~~sp~~~~~l~s 341 (496)
-.++.....+|+++| ++ .++++.+ .++.|++||. .+. ....+.. +-.....|+++|..+.++++
T Consensus 138 ~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~ 213 (329)
T 3fvz_A 138 DQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA 213 (329)
T ss_dssp STTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE
T ss_pred CccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE
Confidence 013445688999999 55 7888886 6999999994 444 3333322 22348999999933888888
Q ss_pred EcCCCcEEEEeCCCCCCCCCCCCceEec--cCCCCEEEEEEcCCCCCEEEEE-------eCCCcEEEEECCCCCcccCCC
Q 010997 342 GSADNSVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSS-------AEDGLLNIWDYEKVGKKVEQG 412 (496)
Q Consensus 342 gs~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~llas~-------~~dg~i~iwd~~~~~~~~~~~ 412 (496)
...++.|++||..+ +..+..+. .+...+..++|+| +. ++++. ..+..|++||+...
T Consensus 214 d~~~~~I~~~~~~~------G~~~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~g------- 278 (329)
T 3fvz_A 214 DRENGRIQCFKTDT------KEFVREIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSSG------- 278 (329)
T ss_dssp ETTTTEEEEEETTT------CCEEEEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTTC-------
T ss_pred ECCCCEEEEEECCC------CcEEEEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCCC-------
Confidence 88999999999986 67777773 4567899999999 32 33333 33458999998874
Q ss_pred CCCCCCCCeeEEEe---cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 413 PRTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 413 ~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.++..+ .++...+.+++++|++ .++++...+ +.|++|++..
T Consensus 279 --------~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~-------~~I~~~~~~~ 322 (329)
T 3fvz_A 279 --------EIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHT-------NTVWKFTLTE 322 (329)
T ss_dssp --------CEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSS-------CCEEEEEEEE
T ss_pred --------eEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCC-------CEEEEEeCCc
Confidence 233333 3566778999999988 677765554 8999999873
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=8e-17 Score=154.59 Aligned_cols=272 Identities=10% Similarity=0.051 Sum_probs=162.5
Q ss_pred cEEEEEe----CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC----CcEEEEec
Q 010997 154 KIVATHT----DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD----KSVVLWSI 225 (496)
Q Consensus 154 ~~lat~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D----g~i~iwd~ 225 (496)
.+++.|+ .++.|.+|.+...... ....... +.. ....++|+|++++|++++.+ +.|.+|++
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~--------~~~~~~~--~~~-~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~ 82 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGE--------SLPLSDA--EVA-NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF 82 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCC--------EEEEEEE--ECS-CCCSEEECTTSSEEEEEECCSSTTCEEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCC--------EEEeecc--cCC-CCceEEECCCCCEEEEEEccCCCCCcEEEEEE
Confidence 3455553 3568999987543110 1112222 444 46789999999999988875 89999998
Q ss_pred CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (496)
+.... ....+.....+......+++ ++..++++...++.|.+
T Consensus 83 ~~~~g------------------------------------~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 83 DKEKG------------------------------------TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ETTTT------------------------------------EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred eCCCC------------------------------------cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 64210 00111233334556677777 66445555557899999
Q ss_pred EEccCCCcc--ceeee--c--------cCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCC-C------c
Q 010997 306 WDARVGTSP--VIKVE--K--------AHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS-P------I 365 (496)
Q Consensus 306 wd~~~~~~~--~~~~~--~--------~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~-~------~ 365 (496)
|++...... ..... . .+...+.+++|+| ++.+| +++..++.|.+|++.......... . .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 999754311 11110 0 1223468899999 88755 455568999999988632000001 1 1
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 445 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l 445 (496)
.....+...+..++|+|+++++++++..++.|.+||+... ... ....+.....+......++|+|++.++
T Consensus 204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~---------~~~~~~~~~~~~~~~~~i~~spdg~~l 273 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-MLD---------EIQTVAADTVNAQGSGDIHLSPDGKYL 273 (361)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-EEE---------EEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-ceE---------EeEEEecCCCCCCCcccEEECCCCCEE
Confidence 1122345668899999999977666657999999999852 110 001122223344556899999999988
Q ss_pred EEEecCCCCCCCCCCeEEEeecCCCCcCCchH--HHHHHHhccceEEEeccCC
Q 010997 446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE--VLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~sP 496 (496)
+++...+ ++.|.+|++... .+. .+..+.. ...+..++|+|
T Consensus 274 ~v~~~~~------~~~i~v~~~~~~----~g~~~~~~~~~~-g~~~~~~~~sp 315 (361)
T 3scy_A 274 YASNRLK------ADGVAIFKVDET----NGTLTKVGYQLT-GIHPRNFIITP 315 (361)
T ss_dssp EEEECSS------SCEEEEEEECTT----TCCEEEEEEEEC-SSCCCEEEECT
T ss_pred EEECCCC------CCEEEEEEEcCC----CCcEEEeeEecC-CCCCceEEECC
Confidence 7765540 389999999621 111 2222222 23456777776
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=1e-16 Score=168.81 Aligned_cols=250 Identities=10% Similarity=0.122 Sum_probs=164.9
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCc----ceeeeecCCCCceEEecC
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA----EFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~----v~~l~~~p~~~~l~sg~~ 216 (496)
.....++|+| ++.+|+++ ||.|++||+.++ +....+.+|.... ...+.|+|||++|+.++.
T Consensus 17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~ 81 (740)
T 4a5s_A 17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYG------------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN 81 (740)
T ss_dssp CCCCCEEECS-SSEEEEEE--TTEEEEEETTTC------------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred ccccccEECC-CCcEEEEc--CCcEEEEECCCC------------ceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence 3466899999 88899886 899999999988 3445566665421 123788999999999887
Q ss_pred C---------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 217 D---------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 217 D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
+ +.+.+||+.++.. ..+..|...+..++||
T Consensus 82 ~~~~~r~~~~~~~~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~S 120 (740)
T 4a5s_A 82 YVKQWRHSYTASYDIYDLNKRQL-----------------------------------------ITEERIPNNTQWVTWS 120 (740)
T ss_dssp EEECSSSCEEEEEEEEETTTTEE-----------------------------------------CCSSCCCTTEEEEEEC
T ss_pred CeeeEEEccceEEEEEECCCCcE-----------------------------------------EEcccCCCcceeeEEC
Confidence 6 5667999987543 2234566789999999
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCe-----------------EEEEecCCCCcEEEEEcCCC----
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-----------------HCVDWNPLDDNLILTGSADN---- 346 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------------~~i~~sp~~~~~l~sgs~dg---- 346 (496)
|+| ..|+.+ .|+.|++||+.++... ..+..++...+ ..+.||| ++..||.++.|.
T Consensus 121 PdG-~~la~~-~~~~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 121 PVG-HKLAYV-WNNDIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVP 196 (740)
T ss_dssp SST-TCEEEE-ETTEEEEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCC
T ss_pred CCC-CEEEEE-ECCeEEEEECCCCceE-EEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCc
Confidence 999 567766 4689999999877621 11222332222 3589999 999998876432
Q ss_pred --------------------------------cEEEEeCCC---CCCCCCCCCceEec------cCCCCEEEEEEcCCCC
Q 010997 347 --------------------------------SVRMFDRRN---LTSNGVGSPINKFE------GHSAAVLCVQWSPDKS 385 (496)
Q Consensus 347 --------------------------------~i~iwd~~~---~~~~~~~~~~~~~~------~h~~~i~~l~~sp~~~ 385 (496)
.|++||+.+ .. ......+. +|...+..++|+|+|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~wspdg~ 272 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT----NATSIQITAPASMLIGDHYLCDVTWATQER 272 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS----CCCEEEECCCHHHHTSCEEEEEEEEEETTE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC----cceEEEecCCccCCCCCeEEEEEEEeCCCe
Confidence 366677664 21 00233333 3777899999999998
Q ss_pred CEEEEEe---CCCcEEEEECCCCCc---ccCCCCCCCCCCCeeEEEecCCCCCcc-----eEEecCCCCcEEEEecCCCC
Q 010997 386 SVFGSSA---EDGLLNIWDYEKVGK---KVEQGPRTTNYPAGLFFQHAGHRDKVV-----DFHWNASDPWTVVSVSDDCD 454 (496)
Q Consensus 386 ~llas~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~V~-----~~~~~p~~~~l~~s~s~d~~ 454 (496)
.++.... .+..|.+||+.++.. ... ...+ ...+|...|. ..+|+|+|..++...++.
T Consensus 273 ~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~---------~~~l-~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~-- 340 (740)
T 4a5s_A 273 ISLQWLRRIQNYSVMDICDYDESSGRWNCLV---------ARQH-IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE-- 340 (740)
T ss_dssp EEEEEEESSTTEEEEEEEEEETTTTEEEECG---------GGCE-EEECSSSCSSSSSCCCCEECTTSSEEEEEEECT--
T ss_pred EEEEEeCCCCCEEEEEEEECCCCccccceeE---------EEEe-eeccCCceEccCcCCCceEcCCCCEEEEEEEcC--
Confidence 4332322 234799999987420 000 0111 1134555544 789999998876455543
Q ss_pred CCCCCCeEEEeecC
Q 010997 455 STGGGGTLQIWRMS 468 (496)
Q Consensus 455 sgg~Dg~i~iw~~~ 468 (496)
.| ...|.+|++.
T Consensus 341 ~G--~~~l~~~~~~ 352 (740)
T 4a5s_A 341 EG--YRHICYFQID 352 (740)
T ss_dssp TS--CEEEEEEETT
T ss_pred CC--ceEEEEEECC
Confidence 22 4678888876
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.73 E-value=1.3e-16 Score=163.40 Aligned_cols=271 Identities=10% Similarity=0.015 Sum_probs=179.7
Q ss_pred CCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCC-Cce
Q 010997 65 WPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP-GEV 143 (496)
Q Consensus 65 wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V 143 (496)
.|..++.+.|+ ..+|.++... +..+.||.+.- -+..++..|. ..|
T Consensus 22 ~~~~~~~~~~D--------G~~la~~s~~----~g~~~lw~~~~----------------------g~~~~lt~~~~~~~ 67 (582)
T 3o4h_A 22 VEKYSLQGVVD--------GDKLLVVGFS----EGSVNAYLYDG----------------------GETVKLNREPINSV 67 (582)
T ss_dssp SCEEEEEEEET--------TTEEEEEEEE----TTEEEEEEEET----------------------TEEEECCSSCCSEE
T ss_pred cchheeecCCC--------CCeEEEEEcc----CCceeEEEEcC----------------------CCcEeeeccccccc
Confidence 37778887775 1355554322 34577776421 0112334455 689
Q ss_pred eEEEecCCCCcEEEEEeC---CCcEEEEeCCC--CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC--ceEEecC
Q 010997 144 NRIRELPQNTKIVATHTD---SPDVLIWDVEA--QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVLSGGK 216 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--~l~sg~~ 216 (496)
..++|+| + +++++++. +....||.+.. .. . ...+..+.. +...+|+|+++ .+++++.
T Consensus 68 ~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g-----------~-~~~l~~~~~--~~~~~~s~dg~~~~~~s~~~ 131 (582)
T 3o4h_A 68 LDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPG-----------E-EQRLEAVKP--MRILSGVDTGEAVVFTGATE 131 (582)
T ss_dssp CEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTT-----------C-CEECTTSCS--BEEEEEEECSSCEEEEEECS
T ss_pred ccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCC-----------c-cccccCCCC--ceeeeeCCCCCeEEEEecCC
Confidence 9999999 6 78887775 45566766544 21 0 112222222 34668888876 4445554
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
| .+.+||+.++.. ..+..+.. .+++|+|+| ..+++
T Consensus 132 ~-~~~l~d~~~g~~-----------------------------------------~~l~~~~~--~~~~~spDG-~~la~ 166 (582)
T 3o4h_A 132 D-RVALYALDGGGL-----------------------------------------RELARLPG--FGFVSDIRG-DLIAG 166 (582)
T ss_dssp S-CEEEEEEETTEE-----------------------------------------EEEEEESS--CEEEEEEET-TEEEE
T ss_pred C-CceEEEccCCcE-----------------------------------------EEeecCCC--ceEEECCCC-CEEEE
Confidence 4 455999876432 22222222 789999999 67887
Q ss_pred EcCC----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC--cEEEEeCCCCCCCCCCCCceEecc
Q 010997 297 VGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 297 ~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
++.+ +.|++||+.+++ ...+..|...+..++|+| ++..|+++..++ .|++||+.+ +... .+..
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~------~~~~-~~~~ 235 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD------GSVE-DLEL 235 (582)
T ss_dssp EEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT------CCEE-ECCC
T ss_pred EEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC------CcEE-EccC
Confidence 7766 789999998877 234567888899999999 999999888898 899999987 5555 6777
Q ss_pred CCCCEEEEE--------EcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCC
Q 010997 371 HSAAVLCVQ--------WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 442 (496)
Q Consensus 371 h~~~i~~l~--------~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~ 442 (496)
|...+..++ |+|+| .++++++.|+.++||++ + +. .. .+.+.|.+++|+ ++
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g-~~--------------~~---~~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--G-ER--------------VE---APQGNHGRVVLW-RG 293 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--T-EE--------------EC---CCSSEEEEEEEE-TT
T ss_pred CCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--C-Ce--------------ec---cCCCceEEEEec-CC
Confidence 777777777 99999 58889999999999999 2 21 11 223568899999 66
Q ss_pred CcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 443 PWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 443 ~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.. +++++.+ ..-..|.+|+..
T Consensus 294 ~~-l~~~s~~----~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KL-VTSHTSL----STPPRIVSLPSG 314 (582)
T ss_dssp EE-EEEEEET----TEEEEEEEETTC
T ss_pred EE-EEEEcCC----CCCCeEEEEcCC
Confidence 54 4554433 111346666654
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=5.5e-15 Score=136.80 Aligned_cols=238 Identities=12% Similarity=0.146 Sum_probs=166.4
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe------cCCCCcceeeee-cCCCCc
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAM-CPTEPY 210 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~------~h~~~~v~~l~~-~p~~~~ 210 (496)
+|-..+.+++++| +++++++...++.|.+||.... ....+. +|.. .+.++++ .+++.+
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~-------------~~~~~~~~~~~~~~~~-~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGR-------------FKFQFGECGKRDSQLL-YPNRVAVVRNSGDI 91 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSC-------------EEEEECCBSSSTTCBS-SEEEEEEETTTTEE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCCc-------------EEEEecccCCCccccc-CceEEEEEcCCCeE
Confidence 3455789999999 7788888888999999997633 112221 2333 4678999 567776
Q ss_pred eEEecC-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEcc
Q 010997 211 VLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP 288 (496)
Q Consensus 211 l~sg~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~ 288 (496)
+++... ++.|.+||... ... ..+. .+...+.+++++|
T Consensus 92 ~v~~~~~~~~i~~~d~~g-~~~----------------------------------------~~~~~~~~~~~~~i~~~~ 130 (286)
T 1q7f_A 92 IVTERSPTHQIQIYNQYG-QFV----------------------------------------RKFGATILQHPRGVTVDN 130 (286)
T ss_dssp EEEECGGGCEEEEECTTS-CEE----------------------------------------EEECTTTCSCEEEEEECT
T ss_pred EEEcCCCCCEEEEECCCC-cEE----------------------------------------EEecCccCCCceEEEEeC
Confidence 666643 89999999432 111 1111 2335678999999
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
++ .++++...++.|.+||.. +. ....+. .+...+..|+++| +++++++.+.++.|++||.. +..+.
T Consensus 131 ~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-------g~~~~ 198 (286)
T 1q7f_A 131 KG-RIIVVECKVMRVIIFDQN-GN--VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLR 198 (286)
T ss_dssp TS-CEEEEETTTTEEEEECTT-SC--EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEE
T ss_pred CC-CEEEEECCCCEEEEEcCC-CC--EEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-------CCEEE
Confidence 98 688888888999999964 33 233332 3456789999999 88888888889999999975 35566
Q ss_pred EeccC--CCCEEEEEEcCCCCCEEEEEeCCC-cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC--CCCcceEEecCC
Q 010997 367 KFEGH--SAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNAS 441 (496)
Q Consensus 367 ~~~~h--~~~i~~l~~sp~~~~llas~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~p~ 441 (496)
.+..+ ...+..++++|+|. ++++...++ .|.+||... ..+..+..+ ...+.+++++|+
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g----------------~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG----------------QLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS----------------CEEEEEEESSCCSCEEEEEEETT
T ss_pred EEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC----------------CEEEEEcccCCCCcceeEEECCC
Confidence 66543 36789999999996 677777675 999999643 122222222 234678999998
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+. ++++. . |++|++|++..
T Consensus 262 g~-l~vs~-~-------~~~v~v~~~~~ 280 (286)
T 1q7f_A 262 GS-VVLAS-K-------DYRLYIYRYVQ 280 (286)
T ss_dssp TE-EEEEE-T-------TTEEEEEECSC
T ss_pred Cc-EEEEC-C-------CCeEEEEEccc
Confidence 75 55542 2 48999999863
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=4.5e-16 Score=161.93 Aligned_cols=261 Identities=11% Similarity=0.045 Sum_probs=165.9
Q ss_pred EecCCCceeEEEecCCCCcEEEEE--eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcce---------eeee
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATH--TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF---------ALAM 204 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~---------~l~~ 204 (496)
..+|...|..+++++ +.-++++. +.++...||....+. ....+..|.. .+. ...|
T Consensus 19 ~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~l~~~~~-~~~~~~~~~~~~~~~~ 84 (662)
T 3azo_A 19 VASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADG------------AEESALPAPW-NVRNRVFEYSGFPWAG 84 (662)
T ss_dssp HHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTS------------CEEESSCTTC-CBCCCGGGTCCCCEEE
T ss_pred HhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCC------------CcceeCCCCc-cccccccccCCcccee
Confidence 347889999999998 66667776 568899999964331 1223334432 223 4545
Q ss_pred c--CCCCc-eEEecC-CCcEEEEecC--C-ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-
Q 010997 205 C--PTEPY-VLSGGK-DKSVVLWSIQ--D-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG- 276 (496)
Q Consensus 205 ~--p~~~~-l~sg~~-Dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (496)
+ |||++ |+.++. +..|.+|++. . +.. ..+..
T Consensus 85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-----------------------------------------~~l~~~ 123 (662)
T 3azo_A 85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-----------------------------------------RPLTPV 123 (662)
T ss_dssp ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-----------------------------------------EECSCC
T ss_pred eeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-----------------------------------------EeccCC
Confidence 5 99998 775543 5566666654 1 111 22222
Q ss_pred ----CCCceeEEEEccCCCceEEEEcCC----------CeEEEEEccC------CCccceeeec-cCCCCeEEEEecCCC
Q 010997 277 ----HEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARV------GTSPVIKVEK-AHDADLHCVDWNPLD 335 (496)
Q Consensus 277 ----h~~~v~~l~~~~~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~~~~-~~~~~v~~i~~sp~~ 335 (496)
|...+.+++|+|+| ..|++++.+ ..|.+||+.+ +. ...+. .+...+..++|+| +
T Consensus 124 ~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~Sp-D 198 (662)
T 3azo_A 124 SAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSP-D 198 (662)
T ss_dssp CCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECT-T
T ss_pred ccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECC-C
Confidence 56678899999999 677777766 5899999987 43 23333 4556788899999 9
Q ss_pred CcEEEEEcCC--------CcEEEEeCC-CCCCCCCC---CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEE
Q 010997 336 DNLILTGSAD--------NSVRMFDRR-NLTSNGVG---SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWD 401 (496)
Q Consensus 336 ~~~l~sgs~d--------g~i~iwd~~-~~~~~~~~---~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd 401 (496)
+.+|+.++.+ ..|.+||+. + + ........|...+..++|+|+|+ ++++++.++ .|.+||
T Consensus 199 G~~la~~~~~~~~~~~~~~~i~~~d~~~~------g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 199 GRQAVWLAWDHPRMPWEGTELKTARVTED------GRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVD 271 (662)
T ss_dssp SSEEEEEEECTTCCTTTCEEEEEEEECTT------SCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred CCEEEEEECCCCCCCCCCcEEEEEEECCC------CcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEE
Confidence 9999887754 379999998 4 3 23333344578899999999999 777888888 455555
Q ss_pred CCCCCcccCCCCCCCCCCCeeEEEecCCCC--------CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997 402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 473 (496)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~ 473 (496)
+... +.. ....++.. .+..++|+|++. ++++ ++. +.++||.+...
T Consensus 272 ~~~~-~~~--------------~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~-------~~~-~~~~l~~~d~~--- 324 (662)
T 3azo_A 272 PATG-AAT--------------QLCRREEEFAGPLWTPGMRWFAPLANGL-IAVV-------HGK-GAAVLGILDPE--- 324 (662)
T ss_dssp TTTC-CEE--------------ESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEE-------EBS-SSCEEEEEETT---
T ss_pred CCCC-cee--------------ecccccccccCccccccCceEeEeCCCE-EEEE-------EEc-CccEEEEEECC---
Confidence 5442 111 00111111 156788888766 4443 333 67888854310
Q ss_pred CchHHHHHHHhccceEEEe
Q 010997 474 PQDEVLAELEKFKAHVISC 492 (496)
Q Consensus 474 ~~~~~~~~l~~h~~~v~~~ 492 (496)
.++ +..+..|.+.+..+
T Consensus 325 -~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 325 -SGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp -TTE-EEECCSSCCEEEEE
T ss_pred -CCc-EEEecCCCCeEEEE
Confidence 222 44556666666655
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=5.1e-16 Score=149.19 Aligned_cols=212 Identities=7% Similarity=0.035 Sum_probs=135.8
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecC-CccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQ-DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (496)
.+..++|+|++++|++++.+ .|.+|++. ++.... +.....
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~--------------------------------------~~~~~~ 81 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH--------------------------------------EASHPI 81 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE--------------------------------------EEEEEC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE--------------------------------------eeEeec
Confidence 36789999999999998888 99999986 432210 001111
Q ss_pred CCCceeEEEEccCCCc-eEEEEc-------------CCCeEEEEEccC-CCccceeeec----cCCCCeEEEEecCCCCc
Q 010997 277 HEDTVEDVTFCPSSAQ-EFCSVG-------------DDSCLILWDARV-GTSPVIKVEK----AHDADLHCVDWNPLDDN 337 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~-~l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~----~~~~~v~~i~~sp~~~~ 337 (496)
+ +.+..++|+|++.. +++++. .+|.+.+|++.. +. ...... .+...+.+++|+| +++
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~sp-dG~ 157 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQNYEYQENTGIHGMVFDP-TET 157 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEEEEECCTTCCEEEEEECT-TSS
T ss_pred C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--CcceEeeEEeCCCCcceEEEECC-CCC
Confidence 1 22456889999932 344553 689999999974 44 222221 2456899999999 888
Q ss_pred EEEEEc-CCCcEEEEeCC-CCCCCCCCCC--ceEec--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC-CcccC
Q 010997 338 LILTGS-ADNSVRMFDRR-NLTSNGVGSP--INKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV-GKKVE 410 (496)
Q Consensus 338 ~l~sgs-~dg~i~iwd~~-~~~~~~~~~~--~~~~~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~-~~~~~ 410 (496)
+|++++ .++.|++||+. + ++. +..+. .|...+..++|+|+|++++++...++.|.+|++... ++...
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~------g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLAS------GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp EEEEEETTTTEEEEEEECTT------SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEcCCCCEEEEEEECCC------CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 777665 46899999998 4 332 23333 246679999999999976655555789999987531 11000
Q ss_pred CCCCCCCCCCeeEEEe----cCCCC------CcceEE-ecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 411 QGPRTTNYPAGLFFQH----AGHRD------KVVDFH-WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~----~~h~~------~V~~~~-~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
....+..+ .+|.. .+..++ |+|++++++++...+ -....++|.+|++.
T Consensus 232 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~--~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 232 --------THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN--KFELQGYIAGFKLR 290 (365)
T ss_dssp --------EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES--STTSCCEEEEEEEC
T ss_pred --------ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC--CCCCCCeEEEEEEC
Confidence 00011111 12232 478999 999999877654332 00112389999996
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.70 E-value=3.4e-15 Score=142.12 Aligned_cols=197 Identities=12% Similarity=0.131 Sum_probs=136.7
Q ss_pred ceeEEEecCCCCc-EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC-----CCcceeeeecCCCCceEEec
Q 010997 142 EVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-----DNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 142 ~V~~l~~~p~~~~-~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~-----~~~v~~l~~~p~~~~l~sg~ 215 (496)
.+..++|+| +++ +++++..++.|.+||+.++ +....+..+. ...+.+++|+|+|++|++++
T Consensus 44 ~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 110 (349)
T 1jmx_B 44 GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTC------------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 110 (349)
T ss_dssp SSCEEEECT-TSSEEEEEETTTTEEEEEETTTT------------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CCceeEECC-CCCEEEEEeCCCCcEEEEeCCCC------------cEEEEEEcccccccccccccceEECCCCCEEEEEc
Confidence 688999999 555 5566777899999999877 3333333221 12368999999999999888
Q ss_pred CC------------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997 216 KD------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 216 ~D------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
.+ +.|.+||+.++.... .+..+. +...+.+
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-------------------------------------~~~~~~-~~~~~~~ 152 (349)
T 1jmx_B 111 NPTQRLNDHYVVKPPRLEVFSTADGLEAK-------------------------------------PVRTFP-MPRQVYL 152 (349)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGGGGBC-------------------------------------CSEEEE-CCSSCCC
T ss_pred ccccccccccccCCCeEEEEECCCccccc-------------------------------------eeeecc-CCCcccc
Confidence 65 899999997643211 112222 2335888
Q ss_pred EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC-----------------------------------------
Q 010997 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----------------------------------------- 322 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------------------------- 322 (496)
++|+|++ .+ ++++. .|.+||+.+++ ....+..+
T Consensus 153 ~~~s~dg-~l-~~~~~--~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 153 MRAADDG-SL-YVAGP--DIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp EEECTTS-CE-EEESS--SEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred eeECCCC-cE-EEccC--cEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 9999999 44 44443 49999998776 22222111
Q ss_pred ---------------------------CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997 323 ---------------------------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (496)
Q Consensus 323 ---------------------------~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i 375 (496)
...+..++|+|.++.+++++ ++.|.+||+.+ ++.+..+.. ...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~-~~~~ 297 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ------RKLIKAANL-DHTY 297 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT------TEEEEEEEC-SSCC
T ss_pred cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc------CeEEEEEcC-CCCc
Confidence 11345667777456677777 88999999988 566666653 3457
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.+++|+|++.+|+ +++.++.|.+||+.+.
T Consensus 298 ~~~~~s~dg~~l~-~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 298 YCVAFDKKGDKLY-LGGTFNDLAVFNPDTL 326 (349)
T ss_dssp CEEEECSSSSCEE-EESBSSEEEEEETTTT
T ss_pred cceEECCCCCEEE-EecCCCeEEEEecccc
Confidence 7999999999876 4677899999999874
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=1.2e-15 Score=147.74 Aligned_cols=242 Identities=9% Similarity=0.019 Sum_probs=152.3
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceee--eecCCCCceEEe-
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL--AMCPTEPYVLSG- 214 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l--~~~p~~~~l~sg- 214 (496)
+|...+..++|+| +++.|+.++.++.|++||+.++ +....+..+.. .+... .++|++.+++..
T Consensus 78 ~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g------------~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~ 143 (388)
T 3pe7_A 78 GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATL------------EENVVYQVPAE-WVGYGTWVANSDCTKLVGIE 143 (388)
T ss_dssp SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECCTT-EEEEEEEEECTTSSEEEEEE
T ss_pred CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCC------------cceeeeechhh-cccccceeECCCCCeecccc
Confidence 3444555778999 8889999999999999999987 33334444443 23333 348888877642
Q ss_pred ---------------------cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997 215 ---------------------GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (496)
Q Consensus 215 ---------------------~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (496)
..+..|.+||+.++.. ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----------------------------------------~~ 182 (388)
T 3pe7_A 144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----------------------------------------TV 182 (388)
T ss_dssp EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----------------------------------------EE
T ss_pred ccCcccccccccchhhhhhccCCcceEEEEECCCCce-----------------------------------------EE
Confidence 2346788888765422 34
Q ss_pred eecCCCceeEEEEcc-CCCceEEEEcCC------CeEEEEEccCCCccceeeeccCC--CCeEEEEecCCCCcEEEEEcC
Q 010997 274 YNGHEDTVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~--~~v~~i~~sp~~~~~l~sgs~ 344 (496)
+..+...+..++|+| ++ ..|+.++.+ ..|.++|+.... . ..+..+. ..+..++|+| ++..|+..+.
T Consensus 183 l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~--~-~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~ 257 (388)
T 3pe7_A 183 ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN--M-RKVKTHAEGESCTHEFWVP-DGSALVYVSY 257 (388)
T ss_dssp EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC--C-EESCCCCTTEEEEEEEECT-TSSCEEEEEE
T ss_pred eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc--e-EEeeeCCCCcccccceECC-CCCEEEEEec
Confidence 445666789999999 88 566665543 377788876554 2 2222333 3578899999 8876655333
Q ss_pred -CC----cEEEEeCCCCCCCCCCC--CceEeccCCCC---EEEEEEcCCCCCEEEEE--------eCCCcEEEEECCCCC
Q 010997 345 -DN----SVRMFDRRNLTSNGVGS--PINKFEGHSAA---VLCVQWSPDKSSVFGSS--------AEDGLLNIWDYEKVG 406 (496)
Q Consensus 345 -dg----~i~iwd~~~~~~~~~~~--~~~~~~~h~~~---i~~l~~sp~~~~llas~--------~~dg~i~iwd~~~~~ 406 (496)
++ .|.+||+.+ +. .+..+.++... ...++|+|+|+.|+++. ..+..|.+||+...
T Consensus 258 ~~~~~~~~l~~~d~~~------g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~- 330 (388)
T 3pe7_A 258 LKGSPDRFIYSADPET------LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG- 330 (388)
T ss_dssp ETTCCCEEEEEECTTT------CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT-
T ss_pred CCCCCcceEEEEecCC------CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC-
Confidence 22 399999987 33 23333321100 11237999999765443 45678999999873
Q ss_pred cccCCCCCCCCCCCeeEEEecCCCC-----------CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 407 KKVEQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~h~~-----------~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.+..+..|.. .+..++|+|++..++.+...+ |..+||.+.
T Consensus 331 ---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------g~~~l~~~~ 381 (388)
T 3pe7_A 331 ---------------TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------GKPALYLAT 381 (388)
T ss_dssp ---------------EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-------SSCEEEEEE
T ss_pred ---------------ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC-------CceeEEEEE
Confidence 1122333333 578899999998877655433 666676654
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=4.8e-15 Score=141.93 Aligned_cols=258 Identities=12% Similarity=0.070 Sum_probs=168.3
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-----CCCcceeeeecCCCC
Q 010997 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-----QDNAEFALAMCPTEP 209 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~~v~~l~~~p~~~ 209 (496)
.++|+| ++++|++++ .++.|.+||..+. +....+... .+.....++++|+|+
T Consensus 54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~------------~~~~~i~~~~~~~~~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKL------------TFEKEISLPPKRVQGLNYDGLFRQTTDGK 120 (361)
T ss_dssp EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTC------------CEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCC------------cEEEEEEcCccccccCCCcceEEECCCCC
Confidence 899999 777777775 2568999999876 333444322 112357899999999
Q ss_pred ceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee-eecCCCceeEEEE
Q 010997 210 YVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVTF 286 (496)
Q Consensus 210 ~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~ 286 (496)
+|+++.. +++|.+||+.+.+.. .. +. . .....+.+
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~----------------------------------------~~~i~-~-~~~~~v~~ 158 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYV----------------------------------------EDVTA-A-AGCWSVIP 158 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEE----------------------------------------EEEGG-G-TTEEEEEE
T ss_pred EEEEECCCCCCeEEEEECCCCcEE----------------------------------------EEEec-C-CCcceeEE
Confidence 9988764 689999999865321 11 11 1 11233567
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccce-e-----eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVI-K-----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-----~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
.|++...+++.+.||.+.+|++..... .. . .+.....++ .+.++| ++..++..+.++.|.++|+....
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~--- 232 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGK-VASQSRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDE--- 232 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSS-EEEEEECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSS---
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCc-EeeeccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCC---
Confidence 787767888899999999999865321 11 0 111122222 333455 56667777789999999987521
Q ss_pred CCCCceEecc------C----CCCEEEEEEcCCCCCEEEEEeC----------CCcEEEEECCCCCcccCCCCCCCCCCC
Q 010997 361 VGSPINKFEG------H----SAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (496)
Q Consensus 361 ~~~~~~~~~~------h----~~~i~~l~~sp~~~~llas~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 420 (496)
...+..+.. + ......++|+|++..++++... .+.|.+||+.+.
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------------- 296 (361)
T 2oiz_A 233 -VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------------- 296 (361)
T ss_dssp -CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------------
T ss_pred -ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------------
Confidence 111112110 0 0111237899998888766541 347999999875
Q ss_pred eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCch--HHHHHHHhccceEEEeccCC
Q 010997 421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD--EVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~sP 496 (496)
+.+..+..+. +.+++|+|++.+++++ +. ++|.+||+. ++ +.++++..+...-..++++|
T Consensus 297 ~~v~~i~~~~--p~~ia~spdg~~l~v~--------n~-~~v~v~D~~------t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 297 QRVARIPGRD--ALSMTIDQQRNLMLTL--------DG-GNVNVYDIS------QPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp EEEEEEECTT--CCEEEEETTTTEEEEE--------CS-SCEEEEECS------SSSCEEEEEETTSCSSEEEEEECC
T ss_pred cEEEEEecCC--eeEEEECCCCCEEEEe--------CC-CeEEEEECC------CCcceeeEEeccCCCCcEEEEecC
Confidence 5566666665 8999999999977643 22 899999998 66 77777655555667778776
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1.2e-15 Score=144.55 Aligned_cols=245 Identities=8% Similarity=0.064 Sum_probs=163.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
..|++++|++ +...++..+.++.++.|. . .....+..+.. .+.+++|++++++++++..++.|
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~i 68 (333)
T 2dg1_A 6 QDLPTLFYSG-KSNSAVPIISESELQTIT---A------------EPWLEISKKGL-QLEGLNFDRQGQLFLLDVFEGNI 68 (333)
T ss_dssp CCCCBCCSCG-GGGCSSCCCCGGGSCEEE---C------------EEEEEEESSCC-CEEEEEECTTSCEEEEETTTCEE
T ss_pred cccceeeecC-CccceeEEeecccCcccc---c------------ceeEEEeccCc-cccCcEECCCCCEEEEECCCCEE
Confidence 4578889999 666677767888999992 2 22345555555 46899999999988888889999
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (496)
.+||..++... .....+...+.+++++|++ .++++...+
T Consensus 69 ~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~dg-~l~v~~~~~ 107 (333)
T 2dg1_A 69 FKINPETKEIK----------------------------------------RPFVSHKANPAAIKIHKDG-RLFVCYLGD 107 (333)
T ss_dssp EEECTTTCCEE----------------------------------------EEEECSSSSEEEEEECTTS-CEEEEECTT
T ss_pred EEEeCCCCcEE----------------------------------------EEeeCCCCCcceEEECCCC-cEEEEeCCC
Confidence 99998754321 1122355679999999998 677776666
Q ss_pred ----CeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcC------CCcEEEEeCCCCCCCCCCCCceEe
Q 010997 301 ----SCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRRNLTSNGVGSPINKF 368 (496)
Q Consensus 301 ----g~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~~~~~ 368 (496)
+.|.+||..++. ..... ..+...++.++++| ++.++++... .+.|..+|... ..+..+
T Consensus 108 ~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~-------~~~~~~ 177 (333)
T 2dg1_A 108 FKSTGGIFAATENGDN--LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF-------RTVTPI 177 (333)
T ss_dssp SSSCCEEEEECTTSCS--CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS-------CCEEEE
T ss_pred CCCCceEEEEeCCCCE--EEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC-------CEEEEe
Confidence 689999988766 22122 13456799999999 8887777654 34566666543 223333
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
..+...+..++|+|++..++++.+.++.|.+||+...+..... ..........++ ..+..+++++++. +.++
T Consensus 178 ~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~------~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~ 249 (333)
T 2dg1_A 178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP------FGATIPYYFTGH-EGPDSCCIDSDDN-LYVA 249 (333)
T ss_dssp EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE------EEEEEEEECCSS-SEEEEEEEBTTCC-EEEE
T ss_pred ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc------ccceEEEecCCC-CCCCceEECCCCC-EEEE
Confidence 3334568899999999877767777889999998642211100 000111122233 4577899999876 4444
Q ss_pred ecCCCCCCCCCCeEEEeecC
Q 010997 449 VSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~ 468 (496)
... ++.|.+|+..
T Consensus 250 ~~~-------~~~v~~~d~~ 262 (333)
T 2dg1_A 250 MYG-------QGRVLVFNKR 262 (333)
T ss_dssp EET-------TTEEEEECTT
T ss_pred EcC-------CCEEEEECCC
Confidence 333 3789999985
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=1.5e-15 Score=147.43 Aligned_cols=265 Identities=12% Similarity=0.029 Sum_probs=150.9
Q ss_pred CceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 141 GEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
..+..++|+| +++.||..... ..|.+||+.++. .. .+..+.......+.|+|+|++|+.++.+
T Consensus 36 ~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~------------~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~ 101 (396)
T 3c5m_A 36 NYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQ------------AV-QLTEGKGDNTFGGFISTDERAFFYVKNE 101 (396)
T ss_dssp CCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTE------------EE-ECCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred eeeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCc------------EE-EeecCCCCccccceECCCCCEEEEEEcC
Confidence 3478889999 77777665443 368888987762 11 2222222233458899999999999989
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
+.|.+||+.++............. .....+.+.. ...... .....+.|+|++ ..++.+
T Consensus 102 ~~l~~~d~~~~~~~~~~~~~~~~~--~~g~~l~~~~--------------~~~~~~-----~~~~~~~~spdg-~~~~~~ 159 (396)
T 3c5m_A 102 LNLMKVDLETLEEQVIYTVDEEWK--GYGTWVANSD--------------CTKLVG-----IEILKRDWQPLT-SWEKFA 159 (396)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEE--EEEEEEECTT--------------SSEEEE-----EEEEGGGCCCCC-SHHHHH
T ss_pred CcEEEEECCCCCcEEEEecccccC--CCCCEEEecc--------------CCcccc-----ccccccccCCCC-cceeee
Confidence 999999997654321111000000 0000000000 000000 000124578887 444433
Q ss_pred -----cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC------CcEEEEeCCCCCCCCCCCCce
Q 010997 298 -----GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 298 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~ 366 (496)
..+..|.+||+.+++ ... ...+...+..+.|+|.++..|+..+.+ ..|.+||+.. ....
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~--~~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~~~~ 229 (396)
T 3c5m_A 160 EFYHTNPTCRLIKVDIETGE--LEV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-------SNVR 229 (396)
T ss_dssp HHHHTCCCEEEEEEETTTCC--EEE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-------CCCE
T ss_pred eeccCCCcceEEEEECCCCc--EEe-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-------Ccee
Confidence 456789999998876 222 235677899999999446656555443 3688888865 2233
Q ss_pred EeccC--CCCEEEEEEcCCCCCEEEEEeCC----CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997 367 KFEGH--SAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 440 (496)
Q Consensus 367 ~~~~h--~~~i~~l~~sp~~~~llas~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p 440 (496)
.+..+ ...+..++|+|+|+.|+.++..+ +.|.+||+.... ...+....+ .. +.|+|
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-------------~~~l~~~~~----~~-~~~s~ 291 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-------------NEEVMVMPP----CS-HLMSN 291 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-------------EEEEEECCS----EE-EEEEC
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-------------eEEeeeCCC----CC-CCccC
Confidence 33333 23588899999999765443322 349999997631 122222222 22 88999
Q ss_pred -CCCcEEEEecCCC--------CCCCCCCeEEEeecCC
Q 010997 441 -SDPWTVVSVSDDC--------DSTGGGGTLQIWRMSD 469 (496)
Q Consensus 441 -~~~~l~~s~s~d~--------~sgg~Dg~i~iw~~~~ 469 (496)
++..++++.++.. .....++.|++||+..
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 8885554332100 0112457899999873
No 172
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=5.8e-14 Score=147.12 Aligned_cols=250 Identities=7% Similarity=-0.077 Sum_probs=165.9
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
|...+..++|+| ++++||.+..++ .|++||+.++ +.......+. .+.+++|+|||+.|+.
T Consensus 123 ~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg------------~~~~~~~~~~--~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 123 GTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGA------------KELPDVLERV--KFSCMAWTHDGKGMFY 187 (710)
T ss_dssp SCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTT------------EEEEEEEEEE--CSCCEEECTTSSEEEE
T ss_pred CCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCC------------CCCcccccCc--ccceEEEEeCCCEEEE
Confidence 445688999999 888888665543 8999999887 2222112222 2568999999999998
Q ss_pred ecCCCc----------------EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--
Q 010997 214 GGKDKS----------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-- 275 (496)
Q Consensus 214 g~~Dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 275 (496)
++.++. |.+|++.++... ....+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~--------------------------------------~~~v~~~~ 229 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE--------------------------------------DILCAEFP 229 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG--------------------------------------CEEEECCT
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCccc--------------------------------------ceEEeccC
Confidence 887766 899998754311 001122
Q ss_pred cCCCceeEEEEccCCCceEEEEcC-----CCeEEEEEccC------CCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARV------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
.|...+..+.|+|++ .+|+.++. +..|.+||+.+ +.. ....+..+...+.. .|+| ++..|+..+.
T Consensus 230 ~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~ 305 (710)
T 2xdw_A 230 DEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTN 305 (710)
T ss_dssp TCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEEC
T ss_pred CCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEEC
Confidence 244557889999999 45555443 67899999986 421 13334455555554 4778 6766665544
Q ss_pred C----CcEEEEeCCCCCCCCCCCCceEeccCCC--CEEEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCcccCCCCCCC
Q 010997 345 D----NSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTT 416 (496)
Q Consensus 345 d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~--~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~~~~~~~~~~~~~ 416 (496)
. +.|.+||+.+.. ......+..|.. .+..++|++++. +++++..|+. |.+||+..+
T Consensus 306 ~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g----------- 369 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPE----ESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATG----------- 369 (710)
T ss_dssp TTCTTCEEEEEETTSCC----GGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTC-----------
T ss_pred CCCCCCEEEEEeCCCCC----cccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCC-----------
Confidence 3 369999988621 012355555544 688899996655 7778888885 555666442
Q ss_pred CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 417 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
..+..+..+...|..++++|++..++++.+ +....++|.+||+..
T Consensus 370 ----~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 370 ----ALLKIFPLEVGSVVGYSGQKKDTEIFYQFT----SFLSPGIIYHCDLTK 414 (710)
T ss_dssp ----CEEEEECCCSSEEEEEECCTTCSEEEEEEE----CSSCCCEEEEEETTS
T ss_pred ----CEEEecCCCCceEEEEecCCCCCEEEEEEe----CCCCCCEEEEEECCC
Confidence 223345556677889999998888777766 455678999999873
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.65 E-value=1.4e-15 Score=160.01 Aligned_cols=211 Identities=11% Similarity=0.169 Sum_probs=133.3
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
..++.|+|++.+|+++ ||+|++||+.++... ..+.+|.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~----------------------------------------~~~~~~~ 56 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS----------------------------------------VFLENST 56 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE----------------------------------------EEECTTT
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceE----------------------------------------EEEechh
Confidence 5689999999988886 999999999876432 2222332
Q ss_pred -----CceeEEEEccCCCceEEEEcCC---------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997 279 -----DTVEDVTFCPSSAQEFCSVGDD---------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 279 -----~~v~~l~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
....++.|+|++ ..++.++.+ +.+.+||+.+++ ...+..|...+...+||| +++.||.+ .
T Consensus 57 ~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~~~l~~~~~~~~~~~~SP-dG~~la~~-~ 130 (740)
T 4a5s_A 57 FDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSP-VGHKLAYV-W 130 (740)
T ss_dssp TTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECS-STTCEEEE-E
T ss_pred hhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCc---EEEcccCCCcceeeEECC-CCCEEEEE-E
Confidence 223468999999 677777776 566799999886 233456778899999999 99999888 4
Q ss_pred CCcEEEEeCCCCCCCCCCCCce-EeccCCCCE-----------------EEEEEcCCCCCEEEEEeC-CCcEEEEECCCC
Q 010997 345 DNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAV-----------------LCVQWSPDKSSVFGSSAE-DGLLNIWDYEKV 405 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i-----------------~~l~~sp~~~~llas~~~-dg~i~iwd~~~~ 405 (496)
++.|++||+.. +.... +..++...+ ..+.|||||+.| |.++. ++.+.+|++...
T Consensus 131 ~~~i~~~~~~~------~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l-a~~~~d~~~v~~~~~~~~ 203 (740)
T 4a5s_A 131 NNDIYVKIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL-AYAQFNDTEVPLIEYSFY 203 (740)
T ss_dssp TTEEEEESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE-EEEEEECTTCCEEEEEEC
T ss_pred CCeEEEEECCC------CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEE-EEEEEcccCCceEEEEee
Confidence 78999999986 33222 122333323 358999999975 45543 343555544321
Q ss_pred Cccc--CC--------CCCC------------CC----CCCeeEEEe-----cCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997 406 GKKV--EQ--------GPRT------------TN----YPAGLFFQH-----AGHRDKVVDFHWNASDPWTVVSVSDDCD 454 (496)
Q Consensus 406 ~~~~--~~--------~~~~------------~~----~~~~~~~~~-----~~h~~~V~~~~~~p~~~~l~~s~s~d~~ 454 (496)
.... .. .... .. ......... .+|...+..++|+|++..++....
T Consensus 204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~---- 279 (740)
T 4a5s_A 204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR---- 279 (740)
T ss_dssp CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE----
T ss_pred cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC----
Confidence 1100 00 0000 00 000111111 136677899999999875444333
Q ss_pred CCCCCCeEEEeecC
Q 010997 455 STGGGGTLQIWRMS 468 (496)
Q Consensus 455 sgg~Dg~i~iw~~~ 468 (496)
.++.+..|++||+.
T Consensus 280 r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 280 RIQNYSVMDICDYD 293 (740)
T ss_dssp SSTTEEEEEEEEEE
T ss_pred CCCCEEEEEEEECC
Confidence 33445689999998
No 174
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=1.6e-13 Score=125.52 Aligned_cols=238 Identities=7% Similarity=-0.025 Sum_probs=161.3
Q ss_pred ceeEEEecCCCCcEEE-EEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 142 EVNRIRELPQNTKIVA-THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 142 ~V~~l~~~p~~~~~la-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
...++++.+ ++++++ +.+.++.|.+||..+... ......+.. .+.+++++++++++++.. ++.|
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~-~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGT------------TVLPFNGLY-QPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----------------EECCCCSCC-SCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCccc------------ceEeeCCcC-CcceeEECCCCCEEEEcC-CCEE
Confidence 578899999 777777 557788999999765411 111111222 467999999998666666 8899
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCceEEEEcC
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
.+||....... .+. .....+.++++.+++ .++++...
T Consensus 90 ~~~d~~~~~~~-----------------------------------------~~~~~~~~~p~~i~~~~~g-~l~v~~~~ 127 (270)
T 1rwi_B 90 VTLAAGSNNQT-----------------------------------------VLPFDGLNYPEGLAVDTQG-AVYVADRG 127 (270)
T ss_dssp EEECTTCSCCE-----------------------------------------ECCCCSCSSEEEEEECTTC-CEEEEEGG
T ss_pred EEEeCCCceEe-----------------------------------------eeecCCcCCCcceEECCCC-CEEEEECC
Confidence 99997643211 011 122457899999988 67888778
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEE
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~ 379 (496)
++.|.+|+..+.. ...........+.+++++| ++.++++...++.|.+||... .........+...+..++
T Consensus 128 ~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~p~~i~ 198 (270)
T 1rwi_B 128 NNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES------NNQVVLPFTDITAPWGIA 198 (270)
T ss_dssp GTEEEEECTTCCS--CEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTT------CCEEECCCSSCCSEEEEE
T ss_pred CCEEEEEECCCce--eEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCC------CceEeecccCCCCceEEE
Confidence 8999999765443 2222223334678999999 888888887889999999876 222222223336789999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCC
Q 010997 380 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG 459 (496)
Q Consensus 380 ~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~D 459 (496)
++++|. ++++...++.|.+||..... .......+...+.++++++++. ++++.+.+
T Consensus 199 ~d~~g~-l~v~~~~~~~v~~~~~~~~~---------------~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~------- 254 (270)
T 1rwi_B 199 VDEAGT-VYVTEHNTNQVVKLLAGSTT---------------STVLPFTGLNTPLAVAVDSDRT-VYVADRGN------- 254 (270)
T ss_dssp ECTTCC-EEEEETTTSCEEEECTTCSC---------------CEECCCCSCSCEEEEEECTTCC-EEEEEGGG-------
T ss_pred ECCCCC-EEEEECCCCcEEEEcCCCCc---------------ceeeccCCCCCceeEEECCCCC-EEEEECCC-------
Confidence 999995 77777778899999986531 1111122335688999999885 66665544
Q ss_pred CeEEEeecCC
Q 010997 460 GTLQIWRMSD 469 (496)
Q Consensus 460 g~i~iw~~~~ 469 (496)
+.|+++++..
T Consensus 255 ~~v~~~~~~~ 264 (270)
T 1rwi_B 255 DRVVKLTSLE 264 (270)
T ss_dssp TEEEEECCCG
T ss_pred CEEEEEcCCC
Confidence 9999999983
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=5.9e-13 Score=125.93 Aligned_cols=234 Identities=10% Similarity=0.061 Sum_probs=156.9
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
...+...+.+++|+| ++++++++..++.|.+||..++ +.......+.. .+.+++++|++++++++.
T Consensus 40 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~-~~~~i~~~~dg~l~v~~~ 105 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETK------------EIKRPFVSHKA-NPAAIKIHKDGRLFVCYL 105 (333)
T ss_dssp EESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTC------------CEEEEEECSSS-SEEEEEECTTSCEEEEEC
T ss_pred EeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCC------------cEEEEeeCCCC-CcceEEECCCCcEEEEeC
Confidence 345666789999998 7788888889999999998876 22222223434 589999999998887776
Q ss_pred CC----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccC
Q 010997 216 KD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPS 289 (496)
Q Consensus 216 ~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~ 289 (496)
.+ +.|.+||.++.... ..+. .+...+.+++++|+
T Consensus 106 ~~~~~~~~i~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 106 GDFKSTGGIFAATENGDNLQ----------------------------------------DIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp TTSSSCCEEEEECTTSCSCE----------------------------------------EEECSSSSCCCEEEEEECTT
T ss_pred CCCCCCceEEEEeCCCCEEE----------------------------------------EEEccCccCCcccceEECCC
Confidence 66 68999998754321 0010 13356889999999
Q ss_pred CCceEEEEcC------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcE-EEEEcCCCcEEEEeCCCCCCCCCC
Q 010997 290 SAQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRNLTSNGVG 362 (496)
Q Consensus 290 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~-l~sgs~dg~i~iwd~~~~~~~~~~ 362 (496)
+ .++++... .+.|..+|...++ .. .+......++.++|+| ++.. +++.+.++.|.+||+... +
T Consensus 146 g-~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~-~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~-----g 215 (333)
T 2dg1_A 146 G-GFYFTDFRGYSTNPLGGVYYVSPDFRT--VT-PIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDD-----G 215 (333)
T ss_dssp S-CEEEEECCCBTTBCCEEEEEECTTSCC--EE-EEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT-----S
T ss_pred C-CEEEEeccccccCCCceEEEEeCCCCE--EE-EeecCCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCC-----C
Confidence 8 66666543 3556666655444 22 2223344688999999 7764 455667889999998641 1
Q ss_pred CCceE--------eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec------C
Q 010997 363 SPINK--------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA------G 428 (496)
Q Consensus 363 ~~~~~--------~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 428 (496)
..+.. +.++ ..+..++++++|. ++++...++.|.+||... ..+..+. +
T Consensus 216 ~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g----------------~~~~~~~~~~~~~g 277 (333)
T 2dg1_A 216 VTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG----------------YPIGQILIPGRDEG 277 (333)
T ss_dssp SSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTS----------------CEEEEEECTTGGGT
T ss_pred cCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCC----------------CEEEEEEcCCCccc
Confidence 22211 1222 4678899999997 666776788999999843 1222222 2
Q ss_pred CCCCcceEEecCCCCcEEEEecC
Q 010997 429 HRDKVVDFHWNASDPWTVVSVSD 451 (496)
Q Consensus 429 h~~~V~~~~~~p~~~~l~~s~s~ 451 (496)
|...+.+++|+|++..++++.+.
T Consensus 278 ~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 278 HMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CSCBCCEEEECTTSCEEEEEEEC
T ss_pred cccCcceEEECCCCCEEEEEeCc
Confidence 33368999999988777776654
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=4.2e-15 Score=154.60 Aligned_cols=224 Identities=10% Similarity=0.055 Sum_probs=143.1
Q ss_pred EEEec--CCCCcE-EEEEeC-CCcEEEEeCC--C-CCCccccCCCCCCCCceEEec-----CCCCcceeeeecCCCCceE
Q 010997 145 RIREL--PQNTKI-VATHTD-SPDVLIWDVE--A-QPNRHAVLGATNSRPDLILTG-----HQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 145 ~l~~~--p~~~~~-lat~~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~l~~-----h~~~~v~~l~~~p~~~~l~ 212 (496)
..+|+ | +++. ||..+. +..|.+|++. . +. ...+.. |.. .+.+++|+|||++|+
T Consensus 81 ~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~-------------~~~l~~~~~~~~~~-~~~~~~~spDg~~l~ 145 (662)
T 3azo_A 81 PWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAV-------------PRPLTPVSAVGGGL-RWADPVLLPERGEVW 145 (662)
T ss_dssp CEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCC-------------CEECSCCCCSTTCE-EEEEEEEETTTTEEE
T ss_pred cceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCC-------------CEeccCCccCCCCc-cccCcEECCCCCEEE
Confidence 45555 8 6666 665543 6677777775 2 31 112333 333 578999999999999
Q ss_pred EecCC----------CcEEEEecCC------ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-
Q 010997 213 SGGKD----------KSVVLWSIQD------HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN- 275 (496)
Q Consensus 213 sg~~D----------g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 275 (496)
+++.| ..|.+||+.+ +.. ..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------------------------------------~~l~~ 184 (662)
T 3azo_A 146 CMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-----------------------------------------RELSD 184 (662)
T ss_dssp EEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-----------------------------------------EESSC
T ss_pred EEEecccCCCCCCceeEEEEEECCCCccccCCce-----------------------------------------eEEEe
Confidence 88877 5899999875 221 2233
Q ss_pred cCCCceeEEEEccCCCceEEEEcCC--------CeEEEEEcc-CCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGDD--------SCLILWDAR-VGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
.+...+..++|+|+| ..|+.++.+ ..|.+||+. ++.. ........+...+..++|+| ++.++++++.+
T Consensus 185 ~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~ 262 (662)
T 3azo_A 185 DAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRT 262 (662)
T ss_dssp SCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTT
T ss_pred cCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCC
Confidence 445678889999999 667666544 479999998 4521 12333345578899999999 88888888888
Q ss_pred C--cEEEEeCCCCCCCCCCCCceEeccCCCC--------EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC
Q 010997 346 N--SVRMFDRRNLTSNGVGSPINKFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415 (496)
Q Consensus 346 g--~i~iwd~~~~~~~~~~~~~~~~~~h~~~--------i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~ 415 (496)
+ .|.+||+.. +........+... +..++|+|++. ++++++. +.++||.+...+
T Consensus 263 ~~~~l~~~~~~~------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~--------- 325 (662)
T 3azo_A 263 GWWNLHRVDPAT------GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPES--------- 325 (662)
T ss_dssp SSCEEEEECTTT------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTT---------
T ss_pred CCeEEEEEECCC------CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCC---------
Confidence 8 566666544 3322222222211 56789999988 6678888 999999544211
Q ss_pred CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 416 ~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
..+..+..|...+..+ |++++..+++++
T Consensus 326 -----~~~~~l~~~~~~~~~~-~s~~~~~~~~~~ 353 (662)
T 3azo_A 326 -----GELVDAAGPWTEWAAT-LTVSGTRAVGVA 353 (662)
T ss_dssp -----TEEEECCSSCCEEEEE-EEEETTEEEEEE
T ss_pred -----CcEEEecCCCCeEEEE-EecCCCEEEEEE
Confidence 1234456666667766 144455555443
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=1.1e-13 Score=130.81 Aligned_cols=251 Identities=8% Similarity=0.007 Sum_probs=160.7
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-c
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G 276 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 276 (496)
.+.+++++|+|+++++...++.+.+++........ ... ......+.+..++..+...+..+. +
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~i~~~d~~~g~~~~~~~~~ 88 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQ---QRG-------------LGPIEEDTILVIDPNNAEILQSSGKN 88 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBS---CGG-------------GCSCCSCCEEEECTTTCCEEEEECTT
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeec---ccc-------------cccccCCcEEEEECCCCeEEeccCCC
Confidence 57899999999988888877543332222110000 000 000011122222222222222222 3
Q ss_pred CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee---------ccCCCCeEEEEecCCCCcEEEEEc-CCC
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILTGS-ADN 346 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~v~~i~~sp~~~~~l~sgs-~dg 346 (496)
+.....+++++|++ .++++...++.|++||...... .+..+ ..+......|+++|.++.++++.+ .++
T Consensus 89 ~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 89 LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred ccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 44578899999998 6888888999999999865421 12222 234457899999995677888876 699
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccC----------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 416 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h----------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~ 416 (496)
.|++||.. +..+..+... -.....|+++|++..|+++...++.|++||..+.
T Consensus 167 ~I~~~~~~-------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G----------- 228 (329)
T 3fvz_A 167 RIVQFSPS-------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK----------- 228 (329)
T ss_dssp EEEEECTT-------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-----------
T ss_pred eEEEEcCC-------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-----------
Confidence 99999943 4666666422 2348999999995558888888999999999853
Q ss_pred CCCCeeEEEe--cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH---HhccceEEE
Q 010997 417 NYPAGLFFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL---EKFKAHVIS 491 (496)
Q Consensus 417 ~~~~~~~~~~--~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l---~~h~~~v~~ 491 (496)
.++..+ .++...+..++|+| ..++++.+...++...++.|++|++. +++.+..+ .++......
T Consensus 229 ----~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~------~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 229 ----EFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFS------SGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp ----CEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETT------TCCEEEEECCSSSCCSSEEE
T ss_pred ----cEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcC------CCeEEEEEcCCCCccCCeeE
Confidence 223333 35666788999999 34555555444466677899999987 45554444 355566788
Q ss_pred eccCC
Q 010997 492 CTSKP 496 (496)
Q Consensus 492 ~~~sP 496 (496)
++++|
T Consensus 297 ia~~~ 301 (329)
T 3fvz_A 297 IVASE 301 (329)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88776
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=5.2e-13 Score=124.08 Aligned_cols=231 Identities=9% Similarity=0.058 Sum_probs=159.2
Q ss_pred EecCCCceeEEEecCCCCc-EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 136 TIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~-~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
...+......++|+| +++ +++++..++.|.+||..+. ...+..+.. .+.+++++|+|+++++.
T Consensus 23 l~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~-~~~~l~~~~dg~l~v~~ 86 (296)
T 3e5z_A 23 LADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--------------LSPEMHPSH-HQNGHCLNKQGHLIACS 86 (296)
T ss_dssp EECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--------------EEEEESSCS-SEEEEEECTTCCEEEEE
T ss_pred EecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--------------eEEEECCCC-CcceeeECCCCcEEEEe
Confidence 335666788999999 665 8889999999999998764 223444544 57899999999988887
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCce
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~ 293 (496)
..++.|.+||..++....... ... .....+.+++++|+| .+
T Consensus 87 ~~~~~i~~~d~~~g~~~~~~~-------------------------------------~~~~~~~~~~~~i~~d~~G-~l 128 (296)
T 3e5z_A 87 HGLRRLERQREPGGEWESIAD-------------------------------------SFEGKKLNSPNDVCLAPDG-SL 128 (296)
T ss_dssp TTTTEEEEECSTTCCEEEEEC-------------------------------------EETTEECCCCCCEEECTTS-CE
T ss_pred cCCCeEEEEcCCCCcEEEEee-------------------------------------ccCCCCCCCCCCEEECCCC-CE
Confidence 778999999986543211000 000 012346789999998 67
Q ss_pred EEE----Ec-------------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 294 FCS----VG-------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 294 l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
+++ |+ ..+.|..++.. +. ......+....+.++|+| ++..+++.+.++.|.+||+...
T Consensus 129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~ 203 (296)
T 3e5z_A 129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNAR 203 (296)
T ss_dssp EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSS
T ss_pred EEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCC
Confidence 776 33 13455555544 33 333345667789999999 8888888888899999998731
Q ss_pred CCCCCCCC---ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997 357 TSNGVGSP---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 433 (496)
Q Consensus 357 ~~~~~~~~---~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 433 (496)
+.. ...+..+...+..++++++|. ++++. ++.|.+||... ..+..+..+.. +
T Consensus 204 -----g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g----------------~~~~~~~~~~~-~ 258 (296)
T 3e5z_A 204 -----GETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG----------------DELGRVLTPQT-T 258 (296)
T ss_dssp -----SCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS----------------CEEEEEECSSC-C
T ss_pred -----CcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC----------------CEEEEEECCCC-c
Confidence 232 223333556677899999997 66555 78899999863 34444555666 8
Q ss_pred ceEEe-cCCCCcEEEEec
Q 010997 434 VDFHW-NASDPWTVVSVS 450 (496)
Q Consensus 434 ~~~~~-~p~~~~l~~s~s 450 (496)
++++| .|++..|+++..
T Consensus 259 ~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp CEEEEESTTSCEEEEEET
T ss_pred eeEEEECCCCCEEEEEcC
Confidence 99999 577777776543
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=3.7e-14 Score=137.44 Aligned_cols=233 Identities=10% Similarity=0.028 Sum_probs=144.0
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCccee-------------------eee
Q 010997 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA-------------------LAM 204 (496)
Q Consensus 144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~-------------------l~~ 204 (496)
..+.|+| +++.||.++.++.|++||+.++. .......+.. .... +.|
T Consensus 84 ~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~------------~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~ 149 (396)
T 3c5m_A 84 FGGFIST-DERAFFYVKNELNLMKVDLETLE------------EQVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDW 149 (396)
T ss_dssp TTCEECT-TSSEEEEEETTTEEEEEETTTCC------------EEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred ccceECC-CCCEEEEEEcCCcEEEEECCCCC------------cEEEEecccc-cCCCCCEEEeccCCcccccccccccc
Confidence 3478999 88899999988899999998762 2222222222 1111 567
Q ss_pred cCCCCceEEe-----cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997 205 CPTEPYVLSG-----GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (496)
Q Consensus 205 ~p~~~~l~sg-----~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (496)
+|+++.++.+ ..+..|.+||+.++.. ..+..+..
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~-----------------------------------------~~~~~~~~ 188 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGEL-----------------------------------------EVIHQDTA 188 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCE-----------------------------------------EEEEEESS
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcE-----------------------------------------EeeccCCc
Confidence 8888876654 3566788888765322 22334566
Q ss_pred ceeEEEEcc-CCCceEEEEcCC------CeEEEEEccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEcCC-----C
Q 010997 280 TVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSAD-----N 346 (496)
Q Consensus 280 ~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~d-----g 346 (496)
.+..+.|+| ++ ..|+.++.+ ..|.+||+..+. ........ ...+..++|+| ++..|+.++.+ +
T Consensus 189 ~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 189 WLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp CEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCE
T ss_pred ccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECC-CCCEEEEEecCCCCccc
Confidence 788999999 66 555554433 468888886654 22222211 23578899999 88877666543 4
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-CCCCEEEEEe----------------CCCcEEEEECCCCCccc
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSA----------------EDGLLNIWDYEKVGKKV 409 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~llas~~----------------~dg~i~iwd~~~~~~~~ 409 (496)
.|.+||+.+ +... .+.... ... +.|+| ++.. +++++ .+..|.+||+.....
T Consensus 265 ~l~~~d~~~------g~~~-~l~~~~-~~~-~~~s~~dg~~-l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-- 332 (396)
T 3c5m_A 265 VIYKANPET------LENE-EVMVMP-PCS-HLMSNFDGSL-MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-- 332 (396)
T ss_dssp EEEEECTTT------CCEE-EEEECC-SEE-EEEECSSSSE-EEEEECCC----------CCCCCCEEEEEETTTTBC--
T ss_pred eEEEEECCC------CCeE-EeeeCC-CCC-CCccCCCCce-EEEecCCcceeeccccccccCCCCcEEEEecccCce--
Confidence 499999987 3322 222112 233 89999 9985 44543 347899999876311
Q ss_pred CCCCCCCCCCCeeEEEecCCCC-----------CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 410 EQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~h~~-----------~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
..+ ..+.. .+..++|+|++..++.+...+ +...||.+.
T Consensus 333 -----------~~l---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-------~~~~l~~~~ 381 (396)
T 3c5m_A 333 -----------QKL---CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-------GVPAIYIAD 381 (396)
T ss_dssp -----------CEE---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-------SSCEEEEEE
T ss_pred -----------EEc---cCCCCccccccccccCCCCCceEccCCCeEEEEecCC-------CCceEEEEE
Confidence 122 22222 256789999998776554332 555555543
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=8e-14 Score=145.63 Aligned_cols=250 Identities=9% Similarity=-0.081 Sum_probs=161.9
Q ss_pred cCCCceeEEEecCCCCcEEE-----EEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 138 IHPGEVNRIRELPQNTKIVA-----THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~la-----t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
+|...+..++||| ++++|| .|+.+..|++||+.++.... . ..+... ....++|+|||+.|+
T Consensus 118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------~-~~~~~~---~~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------V-DVIEGG---KYATPKWTPDSKGFY 183 (695)
T ss_dssp SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------S-CCBSCC---TTCCCEECTTSSEEE
T ss_pred CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC---------C-cccCcc---cccceEEecCCCEEE
Confidence 4566799999999 888888 44455789999999883110 0 011111 126889999999999
Q ss_pred EecCCCc-------------EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997 213 SGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (496)
Q Consensus 213 sg~~Dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (496)
.++.|.. |.+|++.++.... ..+.....|..
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------------~lv~~~~~~~~ 227 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------------------TVVHERTGDPT 227 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------------------------------EEEECCCCCTT
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhc------------------------------------eEEEecCCCCE
Confidence 9888776 9999987643210 00111223556
Q ss_pred ceeEEEEccCCCceEEEEcCCC----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc---CCCcEEEEe
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFD 352 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~dg~i~iwd 352 (496)
.+..+.|+|+| .+|+.++.++ .|.+||...+. ...+..+...+....++ ++.+++.+. .++.|.+||
T Consensus 228 ~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~~--~g~l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 228 TFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHAW--KDRFYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp CEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEEE--TTEEEEEECTTCTTCEEEEEB
T ss_pred EEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEec--CCcEEEEECCCCCCCEEEEEe
Confidence 78899999999 4555555444 56666554433 23334555566666674 444555544 257899999
Q ss_pred CCCCCCCCCCCC--ceEeccC--CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997 353 RRNLTSNGVGSP--INKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (496)
Q Consensus 353 ~~~~~~~~~~~~--~~~~~~h--~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (496)
+.+ +.. ...+..+ ...+..++|+ ++ .++++...|+..+||.+...+. ....+..
T Consensus 302 ~~~------~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~--------------~~~~l~~ 359 (695)
T 2bkl_A 302 PAK------PARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGK--------------PVRTVQL 359 (695)
T ss_dssp TTB------CSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC--------------EEEECCC
T ss_pred CCC------CCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC--------------eeEEecC
Confidence 876 332 2344333 4568888998 44 4788999999988887653211 2222333
Q ss_pred C-CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 429 H-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 429 h-~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+ ...|..++++|++..++++.+ +....++|++||+..
T Consensus 360 ~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 360 PGVGAASNLMGLEDLDDAYYVFT----SFTTPRQIYKTSVST 397 (695)
T ss_dssp SSSSEECCCBSCTTCSEEEEEEE----ETTEEEEEEEEETTT
T ss_pred CCCeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence 3 556888999998888877765 445568999999873
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=5.7e-14 Score=133.74 Aligned_cols=240 Identities=11% Similarity=0.160 Sum_probs=148.3
Q ss_pred ceeEEEecCCCCcEEEEE---------eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997 142 EVNRIRELPQNTKIVATH---------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
.+...++ +++.+|.. ..++.|.+||+.++ +. ..+ . .+..++|+|+|++|+
T Consensus 16 ~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~------------~~-~~l----~-~~~~~~~SpDg~~la 74 (347)
T 2gop_A 16 YLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNN------------AR-RFI----E-NATMPRISPDGKKIA 74 (347)
T ss_dssp EEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTC------------CE-EEE----E-SCEEEEECTTSSEEE
T ss_pred EcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCC------------ce-EEc----c-cCCCeEECCCCCEEE
Confidence 4556666 45555443 12568999999876 21 122 2 468899999999988
Q ss_pred EecCC---Cc--EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 213 SGGKD---KS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 213 sg~~D---g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
.++.+ +. |.+||+.++.. ..+..+.. +..++|+
T Consensus 75 ~~~~~~~~~~~~l~~~~~~~g~~-----------------------------------------~~l~~~~~-~~~~~ws 112 (347)
T 2gop_A 75 FMRANEEKKVSEIWVADLETLSS-----------------------------------------KKILEAKN-IRSLEWN 112 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEE-----------------------------------------EEEEEESE-EEEEEEC
T ss_pred EEEeccCCCcceEEEEECCCCce-----------------------------------------EEEEcCCC-ccceeEC
Confidence 87654 33 66777764321 22222233 8999999
Q ss_pred cCCCceEEEEcC---------------------------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997 288 PSSAQEFCSVGD---------------------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 340 (496)
Q Consensus 288 ~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 340 (496)
|++ ..|+.++. ...|.+||+.+++ ....+.. . .+..++|+| ++ +++
T Consensus 113 pdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~~~~~~~sp-dg-~~~ 185 (347)
T 2gop_A 113 EDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-RFSSGIWHR-DK-IVV 185 (347)
T ss_dssp TTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-TTCEEEEET-TE-EEE
T ss_pred CCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C-CcccccCCC-Ce-EEE
Confidence 999 55655543 2578999998776 2122323 3 788999999 78 777
Q ss_pred EEcCCC-------cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-------CcEEEEECCCCC
Q 010997 341 TGSADN-------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-------GLLNIWDYEKVG 406 (496)
Q Consensus 341 sgs~dg-------~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-------g~i~iwd~~~~~ 406 (496)
+++.++ ...||.+.. +. ...+..+ ..+..+ +|+|+.|+..+..+ ..|.+|| ..
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d~------~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~- 252 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWED------GK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK- 252 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEET------TE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS-
T ss_pred EEecccccccccccccEEEeCC------Cc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC-
Confidence 776542 345554443 33 3334434 555554 99999765444332 3677787 31
Q ss_pred cccCCCCCCCCCCCeeEEEecCCCCCcce-EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc
Q 010997 407 KKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF 485 (496)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h 485 (496)
+ ......+|...+.. +.|+ ++ ++++++.+ +.++|| +.+ ++. ..+..+
T Consensus 253 ~--------------~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~-------~~~~l~-~~~------g~~-~~~~~~ 300 (347)
T 2gop_A 253 E--------------VMGILDEVDRGVGQAKIKD-GK--VYFTLFEE-------GSVNLY-IWD------GEI-KPIAKG 300 (347)
T ss_dssp C--------------EEESSTTCCSEEEEEEEET-TE--EEEEEEET-------TEEEEE-EES------SSE-EEEECS
T ss_pred c--------------eEeccccCCcccCCccEEc-Cc--EEEEEecC-------CcEEEE-EcC------Cce-EEEecC
Confidence 1 12223455667776 8999 66 66666655 899999 862 222 223345
Q ss_pred cceEEEeccCC
Q 010997 486 KAHVISCTSKP 496 (496)
Q Consensus 486 ~~~v~~~~~sP 496 (496)
.+.|.+++|+|
T Consensus 301 ~~~v~~~~~s~ 311 (347)
T 2gop_A 301 RHWIMGFDVDE 311 (347)
T ss_dssp SSEEEEEEESS
T ss_pred CCeEEeeeeeC
Confidence 67888888886
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.57 E-value=1.2e-12 Score=120.83 Aligned_cols=198 Identities=14% Similarity=0.170 Sum_probs=141.8
Q ss_pred CCCceeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
|...+..+++.+.++.++++... ++.|++||.. + +....+.......+.+++++|+++++++...+
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g------------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 141 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G------------QFVRKFGATILQHPRGVTVDNKGRIIVVECKV 141 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S------------CEEEEECTTTCSCEEEEEECTTSCEEEEETTT
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-C------------cEEEEecCccCCCceEEEEeCCCCEEEEECCC
Confidence 44578899995437777777643 7899999943 3 22223322222246899999999988888888
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCCceEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~ 295 (496)
+.|.+||...... ..+. .+...+.++++++++ .+++
T Consensus 142 ~~i~~~~~~g~~~-----------------------------------------~~~~~~~~~~~p~~i~~~~~g-~l~v 179 (286)
T 1q7f_A 142 MRVIIFDQNGNVL-----------------------------------------HKFGCSKHLEFPNGVVVNDKQ-EIFI 179 (286)
T ss_dssp TEEEEECTTSCEE-----------------------------------------EEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred CEEEEEcCCCCEE-----------------------------------------EEeCCCCccCCcEEEEECCCC-CEEE
Confidence 9999999653211 1121 234568899999998 6888
Q ss_pred EEcCCCeEEEEEccCCCccceeeecc--CCCCeEEEEecCCCCcEEEEEcCCC-cEEEEeCCCCCCCCCCCCceEeccCC
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHS 372 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~ 372 (496)
+...++.|++||... . ....+.. +...+..|+++| +++++++...++ .|.+||.. +..+..+..+.
T Consensus 180 ~~~~~~~i~~~~~~g-~--~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-------g~~~~~~~~~~ 248 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEG-Q--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-------GQLISALESKV 248 (286)
T ss_dssp EEGGGTEEEEEETTC-C--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-------SCEEEEEEESS
T ss_pred EECCCCEEEEEcCCC-C--EEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-------CCEEEEEcccC
Confidence 888899999999743 3 2333322 236789999999 888888888776 99999954 46666665543
Q ss_pred C--CEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 373 A--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 373 ~--~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
. .+.+++++|++. ++++ +.|+.|++|++..
T Consensus 249 ~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 249 KHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSC
T ss_pred CCCcceeEEECCCCc-EEEE-CCCCeEEEEEccc
Confidence 3 478999999997 6666 5699999999865
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=2.8e-13 Score=128.89 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=141.1
Q ss_pred CceeEEEecCCCCcEEEEEeCC---C--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997 141 GEVNRIRELPQNTKIVATHTDS---P--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
..+..++|+| +++.||..+.+ + .|.+||+.++ +....... .. +..++|+|+|+.|+.++
T Consensus 59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g------------~~~~l~~~-~~--~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETL------------SSKKILEA-KN--IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTT------------EEEEEEEE-SE--EEEEEECTTSSEEEEEE
T ss_pred ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCC------------ceEEEEcC-CC--ccceeECCCCCEEEEEE
Confidence 5688999999 88888776653 3 4788888765 22222222 22 78999999999888876
Q ss_pred CC---------------------------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997 216 KD---------------------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268 (496)
Q Consensus 216 ~D---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
.+ ..|.+||+.++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-------------------------------------- 164 (347)
T 2gop_A 123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-------------------------------------- 164 (347)
T ss_dssp ECCCC---------CCCC---------CEEEEEEEETTTTEE--------------------------------------
T ss_pred ccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--------------------------------------
Confidence 43 4566677654321
Q ss_pred CCeeeeecCCCceeEEEEccCCCceEEEEcCCC-------eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEE
Q 010997 269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (496)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s 341 (496)
+..+.. . .+..+.|+|++ +++++..++ ...||.+.+++ ...+..+ ..+..+ +| ++..|+.
T Consensus 165 --~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~~l~~~-~~~~~~--sp-dg~~l~~ 231 (347)
T 2gop_A 165 --IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK---EEKMFEK-VSFYAV--DS-DGERILL 231 (347)
T ss_dssp --EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE---EEEEEEE-ESEEEE--EE-CSSCEEE
T ss_pred --EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc---eEEeccC-cceeeE--CC-CCCEEEE
Confidence 122333 2 67889999998 566665432 44555554333 2223334 455544 88 8888877
Q ss_pred EcCC--------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEE-EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCC
Q 010997 342 GSAD--------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412 (496)
Q Consensus 342 gs~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~ 412 (496)
++.+ ..|.+|| . +........+...+.. +.|+ ++ ++++++.++.++|| +.. ++
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~------~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~-g~----- 293 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--G------KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD-GE----- 293 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--S------SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES-SS-----
T ss_pred EEccccCCccccceEEEEC--C------CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC-Cc-----
Confidence 6644 3688888 3 3444444556777886 9999 77 67788889999999 873 21
Q ss_pred CCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 413 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
. ..+..+...|.+++|+| .++++++.+ +....||.+.
T Consensus 294 ---------~-~~~~~~~~~v~~~~~s~---~~~~~~~~~------~~~~~l~~~~ 330 (347)
T 2gop_A 294 ---------I-KPIAKGRHWIMGFDVDE---IVVYLKETA------TRLRELFTWD 330 (347)
T ss_dssp ---------E-EEEECSSSEEEEEEESS---SEEEEEECS------SSCCEEEEES
T ss_pred ---------e-EEEecCCCeEEeeeeeC---cEEEEEcCC------CChHHheEeC
Confidence 1 12233467899999998 355555443 1223666654
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=1.9e-11 Score=113.35 Aligned_cols=242 Identities=7% Similarity=-0.020 Sum_probs=164.8
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D 217 (496)
.+...+.++++.+ +++++++...++.|.+||.. +... ...+..+.. .+.++++.+++.++++...+
T Consensus 12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-----------~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~ 77 (299)
T 2z2n_A 12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-----------EYPLPTPDA-KVMCLTISSDGEVWFTENAA 77 (299)
T ss_dssp SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-----------EEECSSTTC-CEEEEEECTTSCEEEEETTT
T ss_pred CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-----------EecCCcccC-ceeeEEECCCCCEEEeCCCC
Confidence 4456799999999 77788777668899999987 4110 011112223 57899999999888887778
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
+.|..||....... ..+......+.++++.+++ .++++.
T Consensus 78 ~~i~~~~~~g~~~~----------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~ 116 (299)
T 2z2n_A 78 NKIGRITKKGIIKE----------------------------------------YTLPNPDSAPYGITEGPNG-DIWFTE 116 (299)
T ss_dssp TEEEEECTTSCEEE----------------------------------------EECSSTTCCEEEEEECTTS-CEEEEE
T ss_pred CeEEEECCCCcEEE----------------------------------------EeCCCcCCCceeeEECCCC-CEEEEe
Confidence 89999987521100 0011133467899999988 677777
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-eccCCCCEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVL 376 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~i~ 376 (496)
..++.|.+||. ++.. ...........+..+++++ ++.++++...++.|..||. + +..... +......+.
T Consensus 117 ~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~ 186 (299)
T 2z2n_A 117 MNGNRIGRITD-DGKI-REYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-S------GDITEFKIPTPASGPV 186 (299)
T ss_dssp TTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEE
T ss_pred cCCceEEEECC-CCCE-EEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-C------CcEEEeeCCCCCCcce
Confidence 77899999998 5441 1112223456789999999 7888888877889999998 4 333221 333456788
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 456 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg 456 (496)
.+++++++. ++++...++.|.+||. .. . ...+....+...+.++++++++. +.++...
T Consensus 187 ~i~~~~~g~-l~v~~~~~~~i~~~~~-~g-~-------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~----- 244 (299)
T 2z2n_A 187 GITKGNDDA-LWFVEIIGNKIGRITT-SG-E-------------ITEFKIPTPNARPHAITAGAGID-LWFTEWG----- 244 (299)
T ss_dssp EEEECTTSS-EEEEETTTTEEEEECT-TC-C-------------EEEEECSSTTCCEEEEEECSTTC-EEEEETT-----
T ss_pred eEEECCCCC-EEEEccCCceEEEECC-CC-c-------------EEEEECCCCCCCceeEEECCCCC-EEEeccC-----
Confidence 999999987 6766666889999998 42 1 11122334456788999999876 5554332
Q ss_pred CCCCeEEEeecC
Q 010997 457 GGGGTLQIWRMS 468 (496)
Q Consensus 457 g~Dg~i~iw~~~ 468 (496)
++.|.+|+..
T Consensus 245 --~~~i~~~d~~ 254 (299)
T 2z2n_A 245 --ANKIGRLTSN 254 (299)
T ss_dssp --TTEEEEEETT
T ss_pred --CceEEEECCC
Confidence 3789999874
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=5e-13 Score=139.60 Aligned_cols=226 Identities=8% Similarity=-0.040 Sum_probs=144.1
Q ss_pred cCCCCcceeeeecCCCCceE-----EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 193 GHQDNAEFALAMCPTEPYVL-----SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 193 ~h~~~~v~~l~~~p~~~~l~-----sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
+|.. .+.+++|+|||++|+ +|+.+..|++||+.++.... .
T Consensus 118 ~~~~-~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~------------------------------- 162 (695)
T 2bkl_A 118 DGTV-SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---V------------------------------- 162 (695)
T ss_dssp SSCE-EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---S-------------------------------
T ss_pred CCCE-EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---C-------------------------------
Confidence 4443 578999999999988 45556789999998754310 0
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe-------------EEEEEccCCCcc--ceeeeccCCCCeEEEEec
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC-------------LILWDARVGTSP--VIKVEKAHDADLHCVDWN 332 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~s 332 (496)
..+... ....++|+|++ ..|+.++.|.. |++|++.++... .+.....+...+..+.|+
T Consensus 163 ----~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S 235 (695)
T 2bkl_A 163 ----DVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS 235 (695)
T ss_dssp ----CCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred ----cccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence 001111 12578999999 67777777665 999999877632 222333455678999999
Q ss_pred CCCCcEEEEEcCCC----cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe---CCCcEEEEECCCC
Q 010997 333 PLDDNLILTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKV 405 (496)
Q Consensus 333 p~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~---~dg~i~iwd~~~~ 405 (496)
| ++.+|+.++.++ .|.+||... .....+..+...+....| +++. +++++. .++.|.+||+...
T Consensus 236 p-DG~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 236 R-DGKYLFVYILRGWSENDVYWKRPGE-------KDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp T-TSCCEEEEEEETTTEEEEEEECTTC-------SSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred C-CCCEEEEEEeCCCCceEEEEEcCCC-------CceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 9 888888777665 667776543 245556666666667767 6777 666655 2588999998764
Q ss_pred CcccCCCCCCCCCCCeeEEEecCC-CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh
Q 010997 406 GKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK 484 (496)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~ 484 (496)
... ........+ ...|.+++|+ +..++++...| +..+||.+.- .+..+..+..
T Consensus 306 ~~~------------~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~~-----~g~~~~~l~~ 359 (695)
T 2bkl_A 306 ARA------------SWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD-------ATSEVRVATL-----KGKPVRTVQL 359 (695)
T ss_dssp SGG------------GCEEEECCCSSCEEEEEEEE--TTEEEEEEEET-------TEEEEEEEET-----TCCEEEECCC
T ss_pred Ccc------------CCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEeC-----CCCeeEEecC
Confidence 210 011112222 4457888888 45677777665 8888886651 1222233443
Q ss_pred c-cceEEEeccCC
Q 010997 485 F-KAHVISCTSKP 496 (496)
Q Consensus 485 h-~~~v~~~~~sP 496 (496)
+ .+.|..++++|
T Consensus 360 ~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 360 PGVGAASNLMGLE 372 (695)
T ss_dssp SSSSEECCCBSCT
T ss_pred CCCeEEEEeecCC
Confidence 3 55667777665
No 186
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=1e-11 Score=116.25 Aligned_cols=249 Identities=6% Similarity=0.027 Sum_probs=158.3
Q ss_pred CCCceeEEEecCCCCcEEEE-------EeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCc
Q 010997 139 HPGEVNRIRELPQNTKIVAT-------HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPY 210 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~ 210 (496)
.-....+++|.+ ++.++++ +..++.|.+||..++...... .....++.. .+.+++++++ +++
T Consensus 16 ~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--------~~~~~~~~~-~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC--------KPEVNGYGG-IPAGCQCDRDANQL 85 (314)
T ss_dssp CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE--------CCEETTEEC-CEEEEEECSSSSEE
T ss_pred cCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE--------ecccCCCCC-CCceEEEecCCCcE
Confidence 344568899997 7778877 677889999998766211000 000012333 4789999999 765
Q ss_pred eEEecCCCcEEEEecCCcccccc-CCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 211 VLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 211 l~sg~~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+++.. .+.|.+||.+ +..... ... ........+.++++.++
T Consensus 86 ~v~~~-~~~l~~~d~~-g~~~~~~~~~------------------------------------~~~~~~~~~~~i~~d~~ 127 (314)
T 1pjx_A 86 FVADM-RLGLLVVQTD-GTFEEIAKKD------------------------------------SEGRRMQGCNDCAFDYE 127 (314)
T ss_dssp EEEET-TTEEEEEETT-SCEEECCSBC------------------------------------TTSCBCBCCCEEEECTT
T ss_pred EEEEC-CCCEEEEeCC-CCEEEEEecc------------------------------------CCCccccCCcCEEECCC
Confidence 55554 4478889986 432110 000 00011235789999999
Q ss_pred CCceEEEEcCC---------------CeEEEEEccCCCccceeeeccCCCCeEEEEec----CCCCcE-EEEEcCCCcEE
Q 010997 290 SAQEFCSVGDD---------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWN----PLDDNL-ILTGSADNSVR 349 (496)
Q Consensus 290 ~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~-l~sgs~dg~i~ 349 (496)
+ .++++...+ +.|..||.. ++ .. ....+....+.++|+ | ++.. +++...++.|.
T Consensus 128 g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~-~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~ 201 (314)
T 1pjx_A 128 G-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MI-QVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLW 201 (314)
T ss_dssp S-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EE-EEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEE
T ss_pred C-CEEEEecCcccccccccccccCCCCeEEEECCC-CC--EE-EeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEE
Confidence 8 666666554 567777765 33 22 222334557889999 9 7754 45556788999
Q ss_pred EEeCCCCCCCCCCC-----CceEeccCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997 350 MFDRRNLTSNGVGS-----PINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (496)
Q Consensus 350 iwd~~~~~~~~~~~-----~~~~~~~h~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (496)
+||+... +. ....+..+. ..+..++++++|. ++++...++.|.+||..+. ..+
T Consensus 202 ~~~~~~~-----g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g---------------~~~ 260 (314)
T 1pjx_A 202 SYDIKGP-----AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGG---------------QPK 260 (314)
T ss_dssp EEEEEET-----TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCB---------------SCS
T ss_pred EEECCCC-----CccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCC---------------cEe
Confidence 9997620 22 223344444 6688999999997 6767667889999998742 111
Q ss_pred EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.....+...+.+++|+|++..++++...+ +.|..|++..
T Consensus 261 ~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-------~~l~~~~~~~ 299 (314)
T 1pjx_A 261 MRIRCPFEKPSNLHFKPQTKTIFVTEHEN-------NAVWKFEWQR 299 (314)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTT-------TEEEEEECSS
T ss_pred EEEeCCCCCceeEEECCCCCEEEEEeCCC-------CeEEEEeCCC
Confidence 22334456789999999888677755443 7999999873
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=3.3e-11 Score=121.34 Aligned_cols=271 Identities=10% Similarity=0.061 Sum_probs=175.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC--CCCCccccCCCCCCCCceEEecCCCCcceeeeec----C
Q 010997 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC----P 206 (496)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~----p 206 (496)
.+..+.....+..++|+| +++++++++.|+.|.+||+. +. +.+..+..... ...++|+ |
T Consensus 189 v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~------------~~v~~i~~G~~--P~~ia~s~~~~p 253 (567)
T 1qks_A 189 IKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEP------------TTVAEIKIGSE--ARSIETSKMEGW 253 (567)
T ss_dssp EEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------CEEEEEECCSE--EEEEEECCSTTC
T ss_pred EEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCC------------cEeEEEecCCC--CceeEEccccCC
Confidence 444555556788999999 88888889999999999995 44 33445544333 4789999 6
Q ss_pred CCCceEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC-CceeEE
Q 010997 207 TEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDV 284 (496)
Q Consensus 207 ~~~~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l 284 (496)
+|++++++. .+++|.++|..+.+.......... .......|. ..+..+
T Consensus 254 DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~------------------------------~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 254 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM------------------------------TYDEQEYHPEPRVAAI 303 (567)
T ss_dssp TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE------------------------------CTTTCCEESCCCEEEE
T ss_pred CCCEEEEEEccCCeEEEEECCCCcEEEEEecccc------------------------------ccccccccCCCceEEE
Confidence 999877665 469999999876433211100000 000000121 257788
Q ss_pred EEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE-cCCCcEEEEeCCCCCCCCCCC
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~ 363 (496)
..+++++.++++...+|.|.++|........+... ........+.|+| ++.+|+++ ..++.|.++|+.+ ++
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t------~k 375 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE------GK 375 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT------TE
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCC------Cc
Confidence 88988877788888899999999987653222222 3455677899999 78776554 4678999999998 55
Q ss_pred CceEecc-----CCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997 364 PINKFEG-----HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 437 (496)
Q Consensus 364 ~~~~~~~-----h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 437 (496)
.+..+.. |.+.-..+ ++|++..+++++. .++.|.++|....+... .....+..+......-..+.
T Consensus 376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~--------~~~kvv~~i~~~g~g~~~i~ 446 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD--------NAWKILDSFPALGGGSLFIK 446 (567)
T ss_dssp EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--------TBTSEEEEEECSCSCCCCEE
T ss_pred EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc--------ccCEEEEEEecCCCCCEEEE
Confidence 5554432 33222122 6888665776664 46899999987621110 11234455544433335678
Q ss_pred ecCCCCcEEEEecCCCCCCCC----CCeEEEeecCCC
Q 010997 438 WNASDPWTVVSVSDDCDSTGG----GGTLQIWRMSDL 470 (496)
Q Consensus 438 ~~p~~~~l~~s~s~d~~sgg~----Dg~i~iw~~~~~ 470 (496)
.+|+++++.++.. .+. .++|.|+|+.+.
T Consensus 447 ~~p~~~~l~v~~~-----~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 447 THPNSQYLYVDAT-----LNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CCTTCSEEEEECT-----TCSSHHHHTCEEEEEGGGC
T ss_pred eCCCCCeEEEecC-----CCCCcccCceEEEEECCcc
Confidence 9999999888652 111 269999999854
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=9.1e-12 Score=125.43 Aligned_cols=237 Identities=10% Similarity=0.062 Sum_probs=159.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecC--Ccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ--DHI 229 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~--~~~ 229 (496)
.+.++++...++.|.++|..+. +.+..+.... .+..+.|+|+|++|++++.|+.|.+||+. +..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~------------~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTY------------EIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTC------------CEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred CceEEEEeCCCCeEEEEECCCC------------eEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence 4567778888999999999887 4455555433 35789999999999999999999999985 321
Q ss_pred ccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc----cCCCceEEEEcCCCeEEE
Q 010997 230 TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC----PSSAQEFCSVGDDSCLIL 305 (496)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~i 305 (496)
. +..+.. ......++|+ |+|..++++...++.|.+
T Consensus 232 ~----------------------------------------v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V 270 (567)
T 1qks_A 232 T----------------------------------------VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVI 270 (567)
T ss_dssp E----------------------------------------EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred E----------------------------------------eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence 1 122322 2245789999 698656666667799999
Q ss_pred EEccCCCccceeeecc----------C-CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997 306 WDARVGTSPVIKVEKA----------H-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (496)
Q Consensus 306 wd~~~~~~~~~~~~~~----------~-~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (496)
+|..+.+ .+..... | ...+..+..++....+++....+|.|.++|..... ...+..+. ....
T Consensus 271 iD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~-~~~~ 343 (567)
T 1qks_A 271 MDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEIS-AERF 343 (567)
T ss_dssp EETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEE-CCSS
T ss_pred EECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeee-cccc
Confidence 9988876 3333221 1 22678888888445667777788999999988632 11222332 3445
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE--ecCCCCCcceEEecCCCCcEEEEecCC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
...+.|+|+++++++++..++.|.++|+.+. +.. ..+.. ...|.+.-..+ ++|++..+.++..
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~-----------~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-- 408 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLV-----------AIEDTGGQTPHPGRGANF-VHPTFGPVWATSH-- 408 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEE-----------EEEECSSSSBCCTTCEEE-EETTTEEEEEEEB--
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEE-----------EEEeccCcCCCCccceee-ECCCCCcEEEeCC--
Confidence 7789999999998877877899999999874 111 11110 01232211122 5787666665532
Q ss_pred CCCCCCCCeEEEeecCC
Q 010997 453 CDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 453 ~~sgg~Dg~i~iw~~~~ 469 (496)
..++.|.+++...
T Consensus 409 ----~g~~~Vsvid~~~ 421 (567)
T 1qks_A 409 ----MGDDSVALIGTDP 421 (567)
T ss_dssp ----SSSSEEEEEECCT
T ss_pred ----CCCCeEEEecCCC
Confidence 1248999999874
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=6e-12 Score=118.71 Aligned_cols=245 Identities=9% Similarity=-0.031 Sum_probs=158.9
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~ 221 (496)
....+.+. +++++++...++.|.+||..+. +.+..+.... ....++++++++.+++...++.|.
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~------------~~~~~i~~~~--~p~~i~~~~~g~lyv~~~~~~~v~ 108 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTF------------KEVGRITGFT--SPRYIHFLSDEKAYVTQIWDYRIF 108 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEETTTC------------CEEEEEECCS--SEEEEEEEETTEEEEEEBSCSEEE
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEECccc------------EEEEEcCCCC--CCcEEEEeCCCeEEEEECCCCeEE
Confidence 35667663 4567777777899999999988 4445554333 358999999886555555799999
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc-CC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DD 300 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d 300 (496)
+||..+......... ....+.......+++ ..+ .++++.. .+
T Consensus 109 ~iD~~t~~~~~~i~~-----------------------------------g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~ 151 (328)
T 3dsm_A 109 IINPKTYEITGYIEC-----------------------------------PDMDMESGSTEQMVQ-YGK-YVYVNCWSYQ 151 (328)
T ss_dssp EEETTTTEEEEEEEC-----------------------------------TTCCTTTCBCCCEEE-ETT-EEEEEECTTC
T ss_pred EEECCCCeEEEEEEc-----------------------------------CCccccCCCcceEEE-ECC-EEEEEcCCCC
Confidence 999986543211000 000011124456666 333 5555554 48
Q ss_pred CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC----------CcEEEEeCCCCCCCCCCCCceEecc
Q 010997 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----------NSVRMFDRRNLTSNGVGSPINKFEG 370 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d----------g~i~iwd~~~~~~~~~~~~~~~~~~ 370 (496)
+.|.++|+.+++ ....... ......++++| ++.+++++..+ +.|.++|..+ ++....+..
T Consensus 152 ~~v~viD~~t~~--~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~~~ 221 (328)
T 3dsm_A 152 NRILKIDTETDK--VVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFKF 221 (328)
T ss_dssp CEEEEEETTTTE--EEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEEEC
T ss_pred CEEEEEECCCCe--EEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCC------CeEEEEEec
Confidence 999999998876 3433322 34567889999 88877776655 7899999987 555555543
Q ss_pred C-CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 371 H-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 371 h-~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
. ......++|+|++..++++.+ .|.+||+.+... .. ..+ ...+......++++|++..++++.
T Consensus 222 ~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~-~~----------~~~--~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 222 KLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRV-PV----------RPF--LEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp CTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSC-CS----------SCS--BCCCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCce-ee----------eee--ecCCCCceEEEEEcCCCCeEEEEc
Confidence 2 236889999999987764432 899999976421 10 000 011134678899999878888875
Q ss_pred cCCCCCCCCCCeEEEeecC
Q 010997 450 SDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 450 s~d~~sgg~Dg~i~iw~~~ 468 (496)
..| -..++.|.+|+..
T Consensus 286 ~~~---y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 286 AID---YQQQGIVYRYSPQ 301 (328)
T ss_dssp CTT---SSSEEEEEEECTT
T ss_pred ccc---cccCCEEEEECCC
Confidence 111 0224899999987
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.49 E-value=2.3e-12 Score=119.73 Aligned_cols=221 Identities=11% Similarity=0.037 Sum_probs=148.6
Q ss_pred eEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997 189 LILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (496)
Q Consensus 189 ~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
..+..+.. ...+++|+|+++ +++++..++.|..||..++ .
T Consensus 21 ~~l~~~~~-~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------------------- 61 (296)
T 3e5z_A 21 RRLADGFT-WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------------------- 61 (296)
T ss_dssp EEEECCCS-SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-------------------------------------
T ss_pred EEEecCCc-cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-------------------------------------
Confidence 34444444 457999999998 7888889999999998753 1
Q ss_pred cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CCCCeEEEEecCCCCcEEEE--
Q 010997 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILT-- 341 (496)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~s-- 341 (496)
..+..+...+.++++++++ .++++...++.|.+||..+++. ...... ....++.++++| ++.++++
T Consensus 62 ----~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~ 133 (296)
T 3e5z_A 62 ----SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEW--ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDP 133 (296)
T ss_dssp ----EEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCE--EEEECEETTEECCCCCCEEECT-TSCEEEEEC
T ss_pred ----EEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcE--EEEeeccCCCCCCCCCCEEECC-CCCEEEECC
Confidence 3444566778999999998 6777777789999999977762 222111 123567899999 8888887
Q ss_pred --EcC-------------CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010997 342 --GSA-------------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (496)
Q Consensus 342 --gs~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~ 406 (496)
|+. .+.|..+|.. ..+..+..+......++|+|++..+ ++.+.++.|.+||+...+
T Consensus 134 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~--------g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g 204 (296)
T 3e5z_A 134 TYGIDKPEEGYGGEMELPGRWVFRLAPD--------GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARG 204 (296)
T ss_dssp SHHHHCGGGSSCCCCCSSSCEEEEECTT--------SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSS
T ss_pred ccccccccccccccccCCCcEEEEECCC--------CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCC
Confidence 331 2345555543 2234445566778999999999965 788888999999987322
Q ss_pred cccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997 407 KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK 486 (496)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~ 486 (496)
... .....+ ..+...+..++++++|.. .++. ++.|.+|+.. ++.+..+..+.
T Consensus 205 ~~~---------~~~~~~--~~~~~~p~~i~~d~~G~l-~v~~---------~~~v~~~~~~-------g~~~~~~~~~~ 256 (296)
T 3e5z_A 205 ETE---------YQGVHF--TVEPGKTDGLRVDAGGLI-WASA---------GDGVHVLTPD-------GDELGRVLTPQ 256 (296)
T ss_dssp CEE---------EEEEEE--CCSSSCCCSEEEBTTSCE-EEEE---------TTEEEEECTT-------SCEEEEEECSS
T ss_pred cCc---------CCCeEe--eCCCCCCCeEEECCCCCE-EEEc---------CCeEEEECCC-------CCEEEEEECCC
Confidence 110 001122 334556788999998864 4433 2789999986 33344444455
Q ss_pred ceEEEecc
Q 010997 487 AHVISCTS 494 (496)
Q Consensus 487 ~~v~~~~~ 494 (496)
. +.+++|
T Consensus 257 ~-~~~~~f 263 (296)
T 3e5z_A 257 T-TSNLCF 263 (296)
T ss_dssp C-CCEEEE
T ss_pred C-ceeEEE
Confidence 5 666666
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=1e-11 Score=113.83 Aligned_cols=213 Identities=9% Similarity=0.043 Sum_probs=149.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
.+++|++++.++.|++||..++ +.+..+..+....+.++.+.|+|++|++ .++.|..||. +++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG------------~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK------------EIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT------------EEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCC------------eEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE
Confidence 3579999999999999999888 5566676665224789999999998883 4778999998 44332
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceEEEEcC-CCeEEEEEcc
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGD-DSCLILWDAR 309 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~ 309 (496)
..+..+ ...+.++.+.+++ +++++.+. ++.|..+|.
T Consensus 69 ----------------------------------------W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~- 106 (276)
T 3no2_A 69 ----------------------------------------WNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM- 106 (276)
T ss_dssp ----------------------------------------EEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-
T ss_pred ----------------------------------------EEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-
Confidence 233332 2467889999999 67777766 778888875
Q ss_pred CCCccceeeec------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC
Q 010997 310 VGTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383 (496)
Q Consensus 310 ~~~~~~~~~~~------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 383 (496)
.++ .+..+. .+......+++.+ +++++++...++.|..||.. ++.+.++... ..+.++.+.++
T Consensus 107 ~Gk--~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-------G~~~w~~~~~-~~~~~~~~~~~ 175 (276)
T 3no2_A 107 KGE--VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-------GQLLNSVKLS-GTPFSSAFLDN 175 (276)
T ss_dssp TSC--EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-------SCEEEEEECS-SCCCEEEECTT
T ss_pred CCC--EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-------CCEEEEEECC-CCccceeEcCC
Confidence 444 222221 1112455667788 89999999999999999976 5777777754 34567888899
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC------CCCcceEEecCCCCcEEEE
Q 010997 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH------RDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~V~~~~~~p~~~~l~~s 448 (496)
+. ++++++.++.|..+|..++ +.+.....+ ...+..++..+++..++++
T Consensus 176 g~-~~v~~~~~~~v~~~d~~tG---------------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 176 GD-CLVACGDAHCFVQLNLESN---------------RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp SC-EEEECBTTSEEEEECTTTC---------------CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CC-EEEEeCCCCeEEEEeCcCC---------------cEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 88 5567777788999998864 334443321 1236677788877655443
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.46 E-value=2.8e-11 Score=126.76 Aligned_cols=210 Identities=12% Similarity=0.007 Sum_probs=140.4
Q ss_pred eeEEEecCCCCcEEEEEeCCCc----------------EEEEeCCCCCCccccCCCCCCCCceEEec--CCCCcceeeee
Q 010997 143 VNRIRELPQNTKIVATHTDSPD----------------VLIWDVEAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAM 204 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~l~~--h~~~~v~~l~~ 204 (496)
+..++|+| +++.|+.++.++. |++|++.+... .....+.. |.. .+..+.|
T Consensus 173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~----------~~~~v~~~~~~~~-~~~~~~~ 240 (710)
T 2xdw_A 173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS----------EDILCAEFPDEPK-WMGGAEL 240 (710)
T ss_dssp SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG----------GCEEEECCTTCTT-CEEEEEE
T ss_pred cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc----------cceEEeccCCCCe-EEEEEEE
Confidence 67899999 8888888877765 99999987621 11222333 333 3678999
Q ss_pred cCCCCceEEecC-----CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997 205 CPTEPYVLSGGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (496)
Q Consensus 205 ~p~~~~l~sg~~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (496)
+|+|++|+.++. +..|.+||+.+..... ........+..+..
T Consensus 241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~---------------------------------~~~~~~~~l~~~~~ 287 (710)
T 2xdw_A 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI---------------------------------TGILKWVKLIDNFE 287 (710)
T ss_dssp CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS---------------------------------CSSCCCEEEECSSS
T ss_pred cCCCCEEEEEEEccCCCccEEEEEECccccccc---------------------------------CCccceEEeeCCCC
Confidence 999998887664 5689999986410000 00001134455555
Q ss_pred ceeEEEEccCCCceEEEEcCC---CeEEEEEccCCCccceeeeccCCC--CeEEEEecCCCCcEEEEEcCCCc--EEEEe
Q 010997 280 TVEDVTFCPSSAQEFCSVGDD---SCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNS--VRMFD 352 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~--~v~~i~~sp~~~~~l~sgs~dg~--i~iwd 352 (496)
.+.. .|+|++..+++.+..+ +.|.+||+.++.......+..|.. .+..++|++ ++.+++++..|+. |.+||
T Consensus 288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEE
T ss_pred cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEE
Confidence 5544 4788885555554433 369999998764212233334443 688899997 7888899988885 55667
Q ss_pred CCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEECCCC
Q 010997 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKV 405 (496)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~i~iwd~~~~ 405 (496)
+.+ +..+..+..+.+.|..+.++|++..++++.+. .+.|.+||+.+.
T Consensus 366 ~~~------g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 366 LAT------GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp TTT------CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred CCC------CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 655 56677788788889999999998766655443 478999999774
No 193
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.45 E-value=2e-11 Score=116.74 Aligned_cols=228 Identities=9% Similarity=0.091 Sum_probs=143.2
Q ss_pred CCceeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCccccCCCCCCCCceE-EecCCCCcceeeeecCCC-CceEEec
Q 010997 140 PGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTE-PYVLSGG 215 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-l~~h~~~~v~~l~~~p~~-~~l~sg~ 215 (496)
......++++| ++++|+++.. +++|.+||+.+. +.... +. +.. ...+.+.|++ ..+++.+
T Consensus 107 g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~------------~~~~~~i~-~~~--~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 107 LNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKG------------DYVEDVTA-AAG--CWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTT------------EEEEEEGG-GTT--EEEEEECTTSSSEEEEEE
T ss_pred CCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCC------------cEEEEEec-CCC--cceeEEcCCCCeeEEEEC
Confidence 35678899999 7777877653 679999999887 23333 22 111 2335567765 5778888
Q ss_pred CCCcEEEEecCC-ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 216 KDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 216 ~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
.||.+.+|++.. +........ ...+.....++ .+.+++++ ..+
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~----------------------------------~~~~~~~~~~~-~~~~~~~g-~~~ 214 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRS----------------------------------KQMFSVKDDPI-FIAPALDK-DKA 214 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEEC----------------------------------CCCSCTTTSCB-CSCCEECS-SEE
T ss_pred CCCcEEEEEECCCCcEeeeccc----------------------------------cceEcCCCCce-EEEecccC-CEE
Confidence 999999999864 211100000 00111111111 22335666 455
Q ss_pred EEEcCCCeEEEEEccCCCccceeeecc------C----CCCeEEEEecCCCCcEEEEEcC-----------CCcEEEEeC
Q 010997 295 CSVGDDSCLILWDARVGTSPVIKVEKA------H----DADLHCVDWNPLDDNLILTGSA-----------DNSVRMFDR 353 (496)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~------~----~~~v~~i~~sp~~~~~l~sgs~-----------dg~i~iwd~ 353 (496)
+..+.++.|.++|+............. + ......++|+| ++..++++.. .+.|.+||+
T Consensus 215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 666778999999987654211111110 0 01122378999 6665555432 348999999
Q ss_pred CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 433 (496)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 433 (496)
.+ .+.+.++..+. +.+++|+|+|++|+ +++. +.|.+||+.+. ..+++.....+....
T Consensus 294 ~t------~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~t~-------------~l~~~~~i~~~G~~P 350 (361)
T 2oiz_A 294 KT------KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDISQP-------------EPKLLRTIEGAAEAS 350 (361)
T ss_dssp TT------TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECSSS-------------SCEEEEEETTSCSSE
T ss_pred CC------CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECCCC-------------cceeeEEeccCCCCc
Confidence 98 78888888776 89999999999655 5555 99999999873 113444545666677
Q ss_pred ceEEecCCCC
Q 010997 434 VDFHWNASDP 443 (496)
Q Consensus 434 ~~~~~~p~~~ 443 (496)
..++++|+|.
T Consensus 351 ~~~~~~p~G~ 360 (361)
T 2oiz_A 351 LQVQFHPVGG 360 (361)
T ss_dssp EEEEECCCSC
T ss_pred EEEEecCCCC
Confidence 8899999875
No 194
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=5e-12 Score=120.12 Aligned_cols=194 Identities=10% Similarity=0.049 Sum_probs=130.7
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
.++.|++++...+|++|+.+ .+++|+++.......... ...++.. ...+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~-----------------------------~~~~~~~-~~~l 87 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS-----------------------------TPLTFKW-EKEI 87 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS-----------------------------CCCCCSE-EEEC
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc-----------------------------ccccceE-EeeC
Confidence 47899999999999999987 455699865431110000 0011112 2235
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
.. |+.|+| ++ ..|+++ .++.|++||+++.. .......|...+.++.+.+ . + +|+++.||.|.+||+..
T Consensus 88 p~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~-p-~-~av~~~dG~L~v~dl~~-- 155 (388)
T 1xip_A 88 PD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN-N-T-LVILNSVNDLSALDLRT-- 155 (388)
T ss_dssp TT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS-S-E-EEEEETTSEEEEEETTT--
T ss_pred CC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecC-C-C-EEEEECCCCEEEEEccC--
Confidence 56 999999 66 677777 88999999998876 3444557788899888876 2 2 88899999999999997
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc-cCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK-VEQGPRTTNYPAGLFFQHAGHRDKVVDF 436 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 436 (496)
+.... +...|++++|||+| ++.|..||.+++|+....... .... ..|+.+ ....+|...|.++
T Consensus 156 ----~~~~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I----~~Pp~~-~~~~~~~~~V~sI 219 (388)
T 1xip_A 156 ----KSTKQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEF----SLPSEL-EELPVEEYSPLSV 219 (388)
T ss_dssp ----CCEEE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEE----CCCHHH-HTSCTTTSEEEEE
T ss_pred ----Ccccc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcccccccee----cCCccc-ccccCCCeeEEEE
Confidence 33322 45689999999999 357888999999987763100 0000 000000 0112477889999
Q ss_pred EecCCCCcEEEEec
Q 010997 437 HWNASDPWTVVSVS 450 (496)
Q Consensus 437 ~~~p~~~~l~~s~s 450 (496)
.|.+++.++++-..
T Consensus 220 ~wl~~~~flv~y~~ 233 (388)
T 1xip_A 220 TILSPQDFLAVFGN 233 (388)
T ss_dssp EESSSSEEEEEEEC
T ss_pred EEecCCeEEEEEcC
Confidence 99998776654333
No 195
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=4.1e-12 Score=120.70 Aligned_cols=180 Identities=12% Similarity=0.085 Sum_probs=128.5
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~ 221 (496)
.++.+++++ ...++++|+.+ .++||++......... ......+.... .+.. |+.|+| ++++|+++ .++.|+
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~-~~~~~~~~~~~-~lp~--V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITS-DSTPLTFKWEK-EIPD--VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHS-SSCCCCCSEEE-ECTT--EEEEEE--ETTEEEEE-ESSEEE
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhcc-ccccccceEEe-eCCC--eeEEEE--CCCEEEEE-cCCcEE
Confidence 589999999 77788888888 5666997654210000 00001222222 3444 899999 88999998 899999
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
+||+.+... ......|...+.++.+.+. + +++++.||
T Consensus 110 v~dv~sl~~----------------------------------------~~~~~~~~~~v~~i~~~~p--~-~av~~~dG 146 (388)
T 1xip_A 110 SLDLEELSE----------------------------------------FRTVTSFEKPVFQLKNVNN--T-LVILNSVN 146 (388)
T ss_dssp EEESSSTTC----------------------------------------EEEEEECSSCEEEEEECSS--E-EEEEETTS
T ss_pred EEEchhhhc----------------------------------------cCccceeecceeeEEecCC--C-EEEEECCC
Confidence 999975321 1234456667888777653 2 88899999
Q ss_pred eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC--ceEe------c---c
Q 010997 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKF------E---G 370 (496)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--~~~~------~---~ 370 (496)
.|.+||+..+. ... +...|.|++|+| ++ ++.|..||.+++|+... ... ..++ . +
T Consensus 147 ~L~v~dl~~~~--~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~------~~~~~k~~I~~Pp~~~~~~~ 211 (388)
T 1xip_A 147 DLSALDLRTKS--TKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRN------GEMEKQFEFSLPSELEELPV 211 (388)
T ss_dssp EEEEEETTTCC--EEE----EEESEEEEEECS-SE--EEEEETTSCEEEEEEET------TEEEEEEEECCCHHHHTSCT
T ss_pred CEEEEEccCCc--ccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCC------ccccccceecCCcccccccC
Confidence 99999998776 222 446899999999 77 78899999999998876 332 3445 2 4
Q ss_pred CCCCEEEEEEcCCCCCEE
Q 010997 371 HSAAVLCVQWSPDKSSVF 388 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~ll 388 (496)
|...|.+|.|.+++.+++
T Consensus 212 ~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 212 EEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp TTSEEEEEEESSSSEEEE
T ss_pred CCeeEEEEEEecCCeEEE
Confidence 788999999999988654
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=1.5e-11 Score=129.42 Aligned_cols=250 Identities=10% Similarity=-0.033 Sum_probs=156.0
Q ss_pred CCCceeEEEecCCCCcEEEEEeCC-C----cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDS-P----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
|...+..++|+| ++++||.++.+ | .|++||+.++. ... ...+.. .+..++|+|| +.|+.
T Consensus 161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~------------~~~-~~~~~~-~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGK------------PLA-DELKWV-KFSGLAWLGN-DALLY 224 (741)
T ss_dssp --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCC------------EEE-EEEEEE-ESCCCEESTT-SEEEE
T ss_pred CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCC------------CCC-ccCCCc-eeccEEEECC-CEEEE
Confidence 444688999999 78888776553 3 69999999882 211 111111 1358899999 98888
Q ss_pred ecCCCc--------------EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cC
Q 010997 214 GGKDKS--------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GH 277 (496)
Q Consensus 214 g~~Dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h 277 (496)
++.|+. |.+|++.++... ....+. .+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--------------------------------------~~lv~~~~~~ 266 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA--------------------------------------DQPVFATPEL 266 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGG--------------------------------------CEEEECCTTC
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchh--------------------------------------CEEEeccCCC
Confidence 776654 788887643210 011222 23
Q ss_pred CCceeEEEEccCCCceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC----CcE
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSV 348 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d----g~i 348 (496)
...+..+.|+|+| .+|+..+.+ ..|.+||+.++.......+..+...+....+ | ++..|+..+.+ +.|
T Consensus 267 ~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 267 PKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp TTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEE
T ss_pred CeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-c-cCCEEEEEECCCCCCCEE
Confidence 3357899999999 555555433 4899999987621112233344445555543 7 67777766653 459
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (496)
.+||+.... ......+..+...+..++|+ +..++++...|+..+||.+...+ .....+..
T Consensus 344 ~~~d~~~~~----~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g--------------~~~~~l~~ 403 (741)
T 1yr2_A 344 VRVDLSGST----PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDG--------------KPAGAVSL 403 (741)
T ss_dssp EEEECSSSS----CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTS--------------CEEEECBC
T ss_pred EEEeCCCCc----cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC--------------CceeeccC
Confidence 999987621 01222334444556678887 44578888889988888665321 11222332
Q ss_pred -CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 429 -HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 429 -h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+...|..++++|++..++++.+ +....++|++||+..
T Consensus 404 ~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 404 PGIGSASGLSGRPGDRHAYLSFS----SFTQPATVLALDPAT 441 (741)
T ss_dssp SSSCEEEEEECCBTCSCEEEEEE----ETTEEEEEEEEETTT
T ss_pred CCCeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence 3567888999999888877665 445568999999873
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.41 E-value=5.1e-11 Score=108.79 Aligned_cols=200 Identities=10% Similarity=0.018 Sum_probs=140.9
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
+...+..+++.+ +++++++.. ++.|.+||...... ..+.......+.+++++++|+++++...++
T Consensus 65 ~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-------------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 129 (270)
T 1rwi_B 65 GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-------------TVLPFDGLNYPEGLAVDTQGAVYVADRGNN 129 (270)
T ss_dssp SCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-------------EECCCCSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-------------eeeecCCcCCCcceEECCCCCEEEEECCCC
Confidence 335678899999 677777666 88999999876521 111111112468999999998888777788
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|.+|+..+.... .........+.++++++++ .++++..
T Consensus 130 ~i~~~~~~~~~~~----------------------------------------~~~~~~~~~p~~i~~~~~g-~l~v~~~ 168 (270)
T 1rwi_B 130 RVVKLAAGSKTQT----------------------------------------VLPFTGLNDPDGVAVDNSG-NVYVTDT 168 (270)
T ss_dssp EEEEECTTCCSCE----------------------------------------ECCCCSCCSCCCEEECTTC-CEEEEEG
T ss_pred EEEEEECCCceeE----------------------------------------eeccccCCCceeEEEeCCC-CEEEEEC
Confidence 9999975432110 0011122356789999988 6778877
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-cCCCCEEE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLC 377 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~ 377 (496)
.++.|.+||..... .......+...+..|++++ ++.++++...++.|.+||... ....... .+...+.+
T Consensus 169 ~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 169 DNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGS-------TTSTVLPFTGLNTPLA 238 (270)
T ss_dssp GGTEEEEECTTTCC--EEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTC-------SCCEECCCCSCSCEEE
T ss_pred CCCEEEEEecCCCc--eEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCC-------CcceeeccCCCCCcee
Confidence 88999999987655 2222223336789999999 788888888889999999875 2222222 23357899
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
++++|+|. ++++...++.|+++++...
T Consensus 239 i~~~~~g~-l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 239 VAVDSDRT-VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEECTTCC-EEEEEGGGTEEEEECCCGG
T ss_pred EEECCCCC-EEEEECCCCEEEEEcCCCc
Confidence 99999997 7888888999999998763
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.41 E-value=7.2e-10 Score=102.53 Aligned_cols=238 Identities=6% Similarity=-0.004 Sum_probs=160.5
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
+...+..+++.+ ++.++++...++.|..||.... . ....+..... .+.++++.+++.++++...++
T Consensus 55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~--~----------~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~ 120 (299)
T 2z2n_A 55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKGI--I----------KEYTLPNPDS-APYGITEGPNGDIWFTEMNGN 120 (299)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSC--E----------EEEECSSTTC-CEEEEEECTTSCEEEEETTTT
T ss_pred ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCc--E----------EEEeCCCcCC-CceeeEECCCCCEEEEecCCc
Confidence 446789999998 7788888777889999997622 0 0011111222 468999999998888877788
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|.+||. ++.... .........+.++++.+++ .++++..
T Consensus 121 ~i~~~d~-~g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~~ 159 (299)
T 2z2n_A 121 RIGRITD-DGKIRE---------------------------------------YELPNKGSYPSFITLGSDN-ALWFTEN 159 (299)
T ss_dssp EEEEECT-TCCEEE---------------------------------------EECSSTTCCEEEEEECTTS-CEEEEET
T ss_pred eEEEECC-CCCEEE---------------------------------------ecCCCCCCCCceEEEcCCC-CEEEEeC
Confidence 9999987 322110 0111233467899999988 6777777
Q ss_pred CCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEE
Q 010997 299 DDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVL 376 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~ 376 (496)
.++.|..||. +++ .... .......+.++++++ ++.++++...++.|.+||. + +.... ....+...+.
T Consensus 160 ~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 160 QNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-S------GEITEFKIPTPNARPH 228 (299)
T ss_dssp TTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEE
T ss_pred CCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-C------CcEEEEECCCCCCCce
Confidence 7889999998 554 2221 223456788999999 7888877777889999998 4 33222 2233456799
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 456 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg 456 (496)
+++++++|. ++++...++.|.+||... . ...+....+...+.++++ +++. +.++.+
T Consensus 229 ~i~~~~~g~-l~v~~~~~~~i~~~d~~g--~-------------~~~~~~~~~~~~~~~i~~-~~g~-l~v~~~------ 284 (299)
T 2z2n_A 229 AITAGAGID-LWFTEWGANKIGRLTSNN--I-------------IEEYPIQIKSAEPHGICF-DGET-IWFAME------ 284 (299)
T ss_dssp EEEECSTTC-EEEEETTTTEEEEEETTT--E-------------EEEEECSSSSCCEEEEEE-CSSC-EEEEET------
T ss_pred eEEECCCCC-EEEeccCCceEEEECCCC--c-------------eEEEeCCCCCCccceEEe-cCCC-EEEEec------
Confidence 999999987 676665678999999832 1 112223344567889999 7665 444432
Q ss_pred CCCCeEEEeecC
Q 010997 457 GGGGTLQIWRMS 468 (496)
Q Consensus 457 g~Dg~i~iw~~~ 468 (496)
.+.|..+++.
T Consensus 285 --~~~l~~~~~~ 294 (299)
T 2z2n_A 285 --CDKIGKLTLI 294 (299)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCcEEEEEcC
Confidence 2567777776
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=3.5e-10 Score=109.81 Aligned_cols=240 Identities=13% Similarity=0.116 Sum_probs=156.3
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC--
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK-- 218 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg-- 218 (496)
.....|++.+ +++++++...++.|++||..++ ........ .. ... ++|+++++.|+++..++
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g------------~~~~~~~~-~~-~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDN------------KVTTVHPG-FK-GGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTT------------EEEEEEET-CC-BCB-CEECTTSSEEEEEBSSTTC
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCC------------EEEEeecc-CC-CCc-eeEecCCCcEEEEecCCCc
Confidence 4678999998 7888888888899999999876 22222333 22 234 99999999888888766
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEE
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~ 297 (496)
.|.+++......... +..+.. ....+.+++++|++..+++ +
T Consensus 195 ~I~~~d~~~~~~~~~-------------------------------------~g~~~~~~~~~p~~iav~p~~g~lyv-~ 236 (409)
T 3hrp_A 195 TVYVYMKASGWAPTR-------------------------------------IGQLGSTFSGKIGAVALDETEEWLYF-V 236 (409)
T ss_dssp EEEEEEGGGTTCEEE-------------------------------------EEECCTTSCSCCCBCEECTTSSEEEE-E
T ss_pred eEEEEEcCCCceeEE-------------------------------------eeeccchhcCCcEEEEEeCCCCeEEE-E
Confidence 788888754321000 000111 3356788999995535444 6
Q ss_pred cCCCeEEEEEccCCCccceee--eccCCCCe--EEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC-
Q 010997 298 GDDSCLILWDARVGTSPVIKV--EKAHDADL--HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 372 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v--~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~- 372 (496)
..++.|..||...+....... ..++...- +.++|+|.++.++++-..++.|+.||... . +..+.++.
T Consensus 237 d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-------~-~~~~~g~~~ 308 (409)
T 3hrp_A 237 DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-------E-CEWFCGSAT 308 (409)
T ss_dssp CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-------C-EEEEEECTT
T ss_pred ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-------C-EEEEEeCCC
Confidence 678899999998765211100 11222211 39999995577777777889999998764 2 33333322
Q ss_pred --------------CCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC--------
Q 010997 373 --------------AAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-------- 429 (496)
Q Consensus 373 --------------~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------- 429 (496)
.....++++|+|. |+++-. .++.|+.||+... . +..+.++
T Consensus 309 ~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G-~---------------v~~~~g~~~~~g~~~ 371 (409)
T 3hrp_A 309 QKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDG-Y---------------VSTVAGQVDVASQID 371 (409)
T ss_dssp CCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTT-E---------------EEEEEECTTCBSCCC
T ss_pred CCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCC-E---------------EEEEeCCCCCCCcCC
Confidence 3478999999998 777877 7899999997653 1 1122222
Q ss_pred -------CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 430 -------RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 430 -------~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
-.....+++++++ .++++-.. ++.|+.+++
T Consensus 372 g~~~~~~~~~P~giavd~~g-~lyVad~~-------n~~Ir~i~~ 408 (409)
T 3hrp_A 372 GTPLEATFNYPYDICYDGEG-GYWIAEAW-------GKAIRKYAV 408 (409)
T ss_dssp BSTTTCCBSSEEEEEECSSS-EEEEEEST-------TCEEEEEEE
T ss_pred CChhceEeCCceEEEEcCCC-CEEEEECC-------CCeEEEEEe
Confidence 2357889999985 55655443 378887765
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=2.5e-10 Score=105.96 Aligned_cols=230 Identities=13% Similarity=0.068 Sum_probs=150.9
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i 222 (496)
--...|+|.++.++++...++.|+.||..+.. . ..+. ... .+.+++++++|+++++ . ++.|.+
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~~-~~~~i~~~~dG~l~v~-~-~~~l~~ 77 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ------------V-QRVT-MDA-PVSSVALRQSGGYVAT-I-GTKFCA 77 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCC------------E-EEEE-CSS-CEEEEEEBTTSSEEEE-E-TTEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCc------------E-EEEe-CCC-ceEEEEECCCCCEEEE-E-CCeEEE
Confidence 45778899777888888889999999998762 1 1222 222 5789999999995554 3 568999
Q ss_pred EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCCceEEEEcC-
Q 010997 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVGD- 299 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~- 299 (496)
||.+++..... .... .....+++++++|+| .++++...
T Consensus 78 ~d~~~g~~~~~--------------------------------------~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~ 118 (297)
T 3g4e_A 78 LNWKEQSAVVL--------------------------------------ATVDNDKKNNRFNDGKVDPAG-RYFAGTMAE 118 (297)
T ss_dssp EETTTTEEEEE--------------------------------------EECCTTCSSEEEEEEEECTTS-CEEEEEEEC
T ss_pred EECCCCcEEEE--------------------------------------EecCCCCCCCCCCCEEECCCC-CEEEecCCc
Confidence 99875432110 0000 012457899999998 55554422
Q ss_pred --------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCC-----Cc
Q 010997 300 --------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS-----PI 365 (496)
Q Consensus 300 --------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~-----~~ 365 (496)
...-.||.+.... .......+....+.++|+| ++..| ++.+.++.|.+||+.... +. .+
T Consensus 119 ~~~~~~~~~~~~~l~~~d~~g--~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~----G~~~~~~~~ 191 (297)
T 3g4e_A 119 ETAPAVLERHQGALYSLFPDH--HVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQT----GQISNRRSV 191 (297)
T ss_dssp CSBTTBCCTTCEEEEEECTTS--CEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTT----CCEEEEEEE
T ss_pred ccccccccCCCcEEEEEECCC--CEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCC----CcccCcEEE
Confidence 1234555554322 1222223445678999999 77644 666778899999974211 22 12
Q ss_pred eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec-CCCCc
Q 010997 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPW 444 (496)
Q Consensus 366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-p~~~~ 444 (496)
..+..+...+..++++++|. |+++...++.|.+||..+. .++.....+...+++++|. |++..
T Consensus 192 ~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG---------------~~~~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 192 YKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG---------------KRLQTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC---------------CEEEEEECSSSBEEEEEEESGGGCE
T ss_pred EECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc---------------eEEEEEECCCCCceEEEEeCCCCCE
Confidence 23333456788999999996 7777777788999998753 3444555556679999998 88888
Q ss_pred EEEEecC
Q 010997 445 TVVSVSD 451 (496)
Q Consensus 445 l~~s~s~ 451 (496)
|+++.+.
T Consensus 256 L~vt~~~ 262 (297)
T 3g4e_A 256 MYVTCAR 262 (297)
T ss_dssp EEEEEBC
T ss_pred EEEEcCC
Confidence 8887664
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=1.4e-09 Score=100.72 Aligned_cols=241 Identities=8% Similarity=-0.032 Sum_probs=161.8
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
....+.++++.+ ++++.++...++.|.+||.. +... ...+..+.. .+.++++.++++++++...++
T Consensus 18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~-----------~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIK-----------EFEVPTPDA-KVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-----------EEECSSTTC-CEEEEEECTTSCEEEEETTTT
T ss_pred CCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceE-----------EEECCCCCC-cceeEEECCCCCEEEEecCCC
Confidence 445788999999 77888877778999999987 4110 011122222 478999999998877777788
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|..+|.. +.... ..+......+.++++.+++ .++++..
T Consensus 84 ~v~~~d~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~~ 122 (300)
T 2qc5_A 84 KIGKLSKK-GGFTE---------------------------------------YPLPQPDSGPYGITEGLNG-DIWFTQL 122 (300)
T ss_dssp EEEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECSTT-CEEEEET
T ss_pred eEEEECCC-CCeEE---------------------------------------ecCCCCCCCCccceECCCC-CEEEEcc
Confidence 99999876 32110 0111123467899999988 6777777
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEEE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLC 377 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~~ 377 (496)
.++.|..||.. ++. ...........+.++++++ ++.++++...++.|..+|. . +.... ....+...+..
T Consensus 123 ~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~~ 192 (300)
T 2qc5_A 123 NGDRIGKLTAD-GTI-YEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-T------GKLEEYPLPTNAAAPVG 192 (300)
T ss_dssp TTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEEE
T ss_pred CCCeEEEECCC-CCE-EEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-C------CcEEEeeCCCCCCCcce
Confidence 78899999987 441 1122223456789999999 7887777777889999998 3 23222 22234457899
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 457 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg 457 (496)
+++++++. ++++....+.|.+||.... ........+...+.++++++++. +.++...
T Consensus 193 i~~d~~g~-l~v~~~~~~~i~~~~~~g~---------------~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~------ 249 (300)
T 2qc5_A 193 ITSGNDGA-LWFVEIMGNKIGRITTTGE---------------ISEYDIPTPNARPHAITAGKNSE-IWFTEWG------ 249 (300)
T ss_dssp EEECTTSS-EEEEETTTTEEEEECTTCC---------------EEEEECSSTTCCEEEEEECSTTC-EEEEETT------
T ss_pred EEECCCCC-EEEEccCCCEEEEEcCCCc---------------EEEEECCCCCCCceEEEECCCCC-EEEeccC------
Confidence 99999886 6766666778999998321 11122233455688999999876 5554432
Q ss_pred CCCeEEEeecC
Q 010997 458 GGGTLQIWRMS 468 (496)
Q Consensus 458 ~Dg~i~iw~~~ 468 (496)
++.|..|+..
T Consensus 250 -~~~i~~~~~~ 259 (300)
T 2qc5_A 250 -ANQIGRITND 259 (300)
T ss_dssp -TTEEEEECTT
T ss_pred -CCeEEEECCC
Confidence 3788888875
No 202
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=2.5e-10 Score=118.91 Aligned_cols=248 Identities=14% Similarity=0.107 Sum_probs=155.1
Q ss_pred CCCceeEEEecCCCCcEEEE-----EeCCCcEEEEeCCCCCCccccCCCCCCCCce-EEecCCCCcceeeeecCCCCceE
Q 010997 139 HPGEVNRIRELPQNTKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVL 212 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~l~~h~~~~v~~l~~~p~~~~l~ 212 (496)
|...+..++|+| ++++||- |+....|++||+.++. ... .+.+. ....++|+ |++.|+
T Consensus 127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~------------~~~~~~~~~---k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQ------------PLETPLKDV---KFSGISWL-GNEGFF 189 (693)
T ss_dssp SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCS------------EEEEEEEEE---ESCCCEEE-TTTEEE
T ss_pred CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCC------------CCccccCCc---eeccEEEe-CCCEEE
Confidence 455788899999 7777773 3333579999999882 111 12211 13578999 999888
Q ss_pred EecCCCc-------------EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--c-
Q 010997 213 SGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--G- 276 (496)
Q Consensus 213 sg~~Dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 276 (496)
.++.+.. |.+|++.+.... ....+. .
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--------------------------------------~~~v~~~~~~ 231 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQED--------------------------------------DRLVFGAIPA 231 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGG--------------------------------------CEEEESCSGG
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCccc--------------------------------------ceEEEecCCC
Confidence 8877743 888888654221 012222 2
Q ss_pred CCCceeEEEEccCCCceEEEEcC---CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcEEE
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRM 350 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i~i 350 (496)
|...+..+.|+|++..++++.+. +..|.++|+.++.... ..+..+....... |++.++.++++...+ +.|..
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~-~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL-LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC-EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce-EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence 33456789999999655555543 3589999998764222 3334555555554 555244555555444 67999
Q ss_pred EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997 351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (496)
+|+.+.. ......+..|...+. .|++++.+|+++...++ .|++||+... . .......
T Consensus 310 ~d~~~~~----~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~--------------~~~l~~p 368 (693)
T 3iuj_A 310 VDAANPG----PAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-R--------------VREVALP 368 (693)
T ss_dssp EETTSCC----GGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-E--------------EEEECCS
T ss_pred EeCCCCC----ccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-e--------------eEEeecC
Confidence 9998721 112356666766665 89999998776666665 6888888642 1 1111112
Q ss_pred CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
....+..+.+++++..++++.+.. ..-++|..||+.
T Consensus 369 ~~~~~~~~~~~~d~~~l~~~~ss~----~tP~~l~~~d~~ 404 (693)
T 3iuj_A 369 GLGSVSGFNGKHDDPALYFGFENY----AQPPTLYRFEPK 404 (693)
T ss_dssp SSSEEEECCCCTTCSCEEEEEECS----SSCCEEEEECTT
T ss_pred CCceEEeeecCCCCCEEEEEecCC----CCCCEEEEEECC
Confidence 334577788888888888776532 233678888875
No 203
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=1.4e-09 Score=102.26 Aligned_cols=231 Identities=8% Similarity=0.012 Sum_probs=144.7
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i 222 (496)
....+|+|+++.++++...++.|.+||..++. . ..+. ... .+.+++|+++|+++++. .+ .|.+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~~-~v~~i~~~~dg~l~v~~-~~-gl~~ 113 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR------------K-TVHA-LPF-MGSALAKISDSKQLIAS-DD-GLFL 113 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE------------E-EEEE-CSS-CEEEEEEEETTEEEEEE-TT-EEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc------------E-EEEE-CCC-cceEEEEeCCCeEEEEE-CC-CEEE
Confidence 45778999667788888888999999987761 1 1122 122 57899999999877765 33 4899
Q ss_pred EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC---
Q 010997 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD--- 299 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--- 299 (496)
||..++........ . .......++++.++|++ .++++...
T Consensus 114 ~d~~~g~~~~~~~~-----------------------------~-------~~~~~~~~~~i~~d~~G-~l~v~~~~~~~ 156 (326)
T 2ghs_A 114 RDTATGVLTLHAEL-----------------------------E-------SDLPGNRSNDGRMHPSG-ALWIGTMGRKA 156 (326)
T ss_dssp EETTTCCEEEEECS-----------------------------S-------TTCTTEEEEEEEECTTS-CEEEEEEETTC
T ss_pred EECCCCcEEEEeeC-----------------------------C-------CCCCCCCCCCEEECCCC-CEEEEeCCCcC
Confidence 99865432110000 0 00012468899999998 55554432
Q ss_pred ---CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCC--CC-CCCCCCCCceEeccCC
Q 010997 300 ---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRR--NL-TSNGVGSPINKFEGHS 372 (496)
Q Consensus 300 ---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~--~~-~~~~~~~~~~~~~~h~ 372 (496)
.+.|..+| .++ ...+..+....+.++|+| ++..| ++.+.++.|.+||+. +. .. .....+..+....
T Consensus 157 ~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~-~~~~~~~~~~~~~ 229 (326)
T 2ghs_A 157 ETGAGSIYHVA--KGK---VTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGIK 229 (326)
T ss_dssp CTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTSS
T ss_pred CCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcc-cCceEEEECCCCC
Confidence 24555555 333 222223334678999999 77655 555667899999986 31 10 0001122333344
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec-CCCCcEEEEecC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPWTVVSVSD 451 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-p~~~~l~~s~s~ 451 (496)
..+..+++.++|. ++++...++.|.+||... ..+.....+...+++++|. +++..++++.+.
T Consensus 230 ~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g----------------~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 230 GGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG----------------NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SEEEEEEECTTSC-EEEEEETTTEEEEECTTC----------------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCCeeEECCCCC-EEEEEeCCCEEEEECCCC----------------CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 5678999999997 665665678899999743 2333344455578999998 887777776553
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.31 E-value=6.7e-09 Score=95.97 Aligned_cols=227 Identities=6% Similarity=-0.051 Sum_probs=152.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
+...+..+++.+ ++.++++...++.|..||.. +... ...+..... .+.++++.++++++++...++
T Consensus 60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~-----------~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~ 125 (300)
T 2qc5_A 60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT-----------EYPLPQPDS-GPYGITEGLNGDIWFTQLNGD 125 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-----------EEECSSTTC-CEEEEEECSTTCEEEEETTTT
T ss_pred CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE-----------EecCCCCCC-CCccceECCCCCEEEEccCCC
Confidence 346788999988 77788777778899999987 4110 011111222 468999999998888877788
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|..+|.. +.... ..+......+.++++.+++ .++++..
T Consensus 126 ~i~~~~~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~d~~g-~l~v~~~ 164 (300)
T 2qc5_A 126 RIGKLTAD-GTIYE---------------------------------------YDLPNKGSYPAFITLGSDN-ALWFTEN 164 (300)
T ss_dssp EEEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECTTS-SEEEEET
T ss_pred eEEEECCC-CCEEE---------------------------------------ccCCCCCCCceeEEECCCC-CEEEEec
Confidence 99999875 22110 0011123467899999988 6777777
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEEE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLC 377 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~~ 377 (496)
.++.|..||. .+.. .......+...+..+++++ ++.++++....+.|.+||.. +.... .+..+...+.+
T Consensus 165 ~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 165 QNNSIGRITN-TGKL-EEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTT-------GEISEYDIPTPNARPHA 234 (300)
T ss_dssp TTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-------CCEEEEECSSTTCCEEE
T ss_pred CCCeEEEECC-CCcE-EEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCC-------CcEEEEECCCCCCCceE
Confidence 7889999998 4441 1112223445789999999 78888877777889999983 23222 23334567899
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~ 446 (496)
+++++++. ++++...++.|..||... . ...+........+.++++.+++...+
T Consensus 235 i~~d~~g~-l~v~~~~~~~i~~~~~~g--~-------------~~~~~~~~~~~~~~~i~~~~~g~l~v 287 (300)
T 2qc5_A 235 ITAGKNSE-IWFTEWGANQIGRITNDN--T-------------IQEYQLQTENAEPHGITFGKDGSVWF 287 (300)
T ss_dssp EEECSTTC-EEEEETTTTEEEEECTTS--C-------------EEEEECCSTTCCCCCEEECTTSCEEE
T ss_pred EEECCCCC-EEEeccCCCeEEEECCCC--c-------------EEEEECCccCCccceeEeCCCCCEEE
Confidence 99999987 676666678999999832 1 11222233345688999999876444
No 205
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.31 E-value=3.9e-10 Score=106.20 Aligned_cols=202 Identities=9% Similarity=-0.030 Sum_probs=134.5
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC----CcceeeeecCCCCc
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD----NAEFALAMCPTEPY 210 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~----~~v~~l~~~p~~~~ 210 (496)
..+........+++++ ++.++++...++.|.+||..+. +....+..... .....+++ .++..
T Consensus 78 ~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~------------~~~~~i~~g~~~~~~~~p~~i~~-~~~~l 143 (328)
T 3dsm_A 78 GRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTY------------EITGYIECPDMDMESGSTEQMVQ-YGKYV 143 (328)
T ss_dssp EEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTT------------EEEEEEECTTCCTTTCBCCCEEE-ETTEE
T ss_pred EEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCC------------eEEEEEEcCCccccCCCcceEEE-ECCEE
Confidence 3445556788999988 5666666658899999999887 22233332220 02356777 34444
Q ss_pred eEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997 211 VLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (496)
Q Consensus 211 l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (496)
+++.. .++.|.++|+.++... ..+.. ......+.++|+
T Consensus 144 yv~~~~~~~~v~viD~~t~~~~----------------------------------------~~i~~-g~~p~~i~~~~d 182 (328)
T 3dsm_A 144 YVNCWSYQNRILKIDTETDKVV----------------------------------------DELTI-GIQPTSLVMDKY 182 (328)
T ss_dssp EEEECTTCCEEEEEETTTTEEE----------------------------------------EEEEC-SSCBCCCEECTT
T ss_pred EEEcCCCCCEEEEEECCCCeEE----------------------------------------EEEEc-CCCccceEEcCC
Confidence 44443 4899999999865432 11211 123467889998
Q ss_pred CCceEEEEcCC----------CeEEEEEccCCCccceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 290 SAQEFCSVGDD----------SCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 290 ~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
+ .+++++..+ +.|.++|..+.+ ....... .......++|+| ++..|.++.. .|.+||..+
T Consensus 183 G-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t--- 253 (328)
T 3dsm_A 183 N-KMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEA--- 253 (328)
T ss_dssp S-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTC---
T ss_pred C-CEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCC---
Confidence 8 566666554 789999998776 3333322 134689999999 7787777654 899999987
Q ss_pred CCCCCCce--EeccCCCCEEEEEEcCCCCCEEEEE----eCCCcEEEEECC
Q 010997 359 NGVGSPIN--KFEGHSAAVLCVQWSPDKSSVFGSS----AEDGLLNIWDYE 403 (496)
Q Consensus 359 ~~~~~~~~--~~~~h~~~i~~l~~sp~~~~llas~----~~dg~i~iwd~~ 403 (496)
++... .+.........++++|++..++++. ..++.|.+||..
T Consensus 254 ---~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 254 ---DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp ---SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred ---CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 33221 1222246789999999777788887 678999999987
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.30 E-value=4.3e-10 Score=105.00 Aligned_cols=208 Identities=9% Similarity=0.083 Sum_probs=137.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC-
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD- 217 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D- 217 (496)
+...+..+++.+++++++++... +.|.+||.. +....... ....+.....+.+++++++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~--------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 138 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAK--------KDSEGRRMQGCNDCAFDYEGNLWITAPAGE 138 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCS--------BCTTSCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred CCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEe--------ccCCCccccCCcCEEECCCCCEEEEecCcc
Confidence 44678999999932776666544 479999987 42110000 00011112246899999999877776654
Q ss_pred --------------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997 218 --------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 218 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
+.|..||.. +.. ..+..+......
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~-----------------------------------------~~~~~~~~~~~~ 176 (314)
T 1pjx_A 139 VAPADYTRSMQEKFGSIYCFTTD-GQM-----------------------------------------IQVDTAFQFPNG 176 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTT-SCE-----------------------------------------EEEEEEESSEEE
T ss_pred cccccccccccCCCCeEEEECCC-CCE-----------------------------------------EEeccCCCCcce
Confidence 455555543 110 112223345678
Q ss_pred EEEc----cCCCceEEEEcCCCeEEEEEcc-CCCcc---ceeeeccCC-CCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997 284 VTFC----PSSAQEFCSVGDDSCLILWDAR-VGTSP---VIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 284 l~~~----~~~~~~l~s~~~dg~i~iwd~~-~~~~~---~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~ 354 (496)
++|+ |++..++++...++.|.+||+. .+... ....+..+. ..+..+++++ +++++++...++.|.+||..
T Consensus 177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCC
Confidence 8999 9884455666778999999986 33210 111222333 5678999999 88888888788899999988
Q ss_pred CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+ +..+..+..+...+.+++|+|++..|+++...++.|..|++...
T Consensus 256 ~------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 256 G------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp C------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred C------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 6 46666676677889999999999877777777789999998764
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.30 E-value=3e-10 Score=107.48 Aligned_cols=245 Identities=11% Similarity=0.090 Sum_probs=148.6
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC------CCcceeeeecCCC
Q 010997 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE 208 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~------~~~v~~l~~~p~~ 208 (496)
.++++| +++.++.++ .++.|.+||..+. +....+.-.. +..-..++++|||
T Consensus 82 ~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~------------~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 82 NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTL------------LPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------eEEEEEECCCccccccCCCCceEEEcCCC
Confidence 399999 666665554 3578999999988 3344433211 1124689999999
Q ss_pred CceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 209 PYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 209 ~~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
++|+.+.. ++.|.++|+.+.+.. ..+.-. + + ...
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv----------------------------------------~tI~v~-g-~--~~~ 184 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFK----------------------------------------RMLDVP-D-C--YHI 184 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEE----------------------------------------EEEECC-S-E--EEE
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEE----------------------------------------EEEECC-C-c--cee
Confidence 98887753 689999999875432 222110 1 1 122
Q ss_pred ccCCCceEEEEcCCCeEEEEEccC-CCccceeeeccC----CCCe-EEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAH----DADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~----~~~v-~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
.|.+...|++.+.||.+.+.++.. ++ .......+ ...+ ....|.+.++.++. .+.+|.|.+.|+....
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~--v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~--- 258 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGT--PEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD--- 258 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSC--CEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS---
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCe--EEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc---
Confidence 355546677888889988888876 34 11111111 1222 22456432665544 5568999999997621
Q ss_pred CCCCceEec----------cCCCCEEEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCCcccCCCCCCCCCCCe
Q 010997 361 VGSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYPAG 421 (496)
Q Consensus 361 ~~~~~~~~~----------~h~~~i~~l~~sp~~~~llas~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 421 (496)
...+..+. ........++++|++..++++... .+.|.+.|+.+. +
T Consensus 259 -~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---------------k 322 (386)
T 3sjl_D 259 -AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------------E 322 (386)
T ss_dssp -CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------------C
T ss_pred -ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------------e
Confidence 11222221 012233457789999988876532 257999999885 2
Q ss_pred eEEEe-cCCCCCcceEEecCCCC-cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997 422 LFFQH-AGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 483 (496)
Q Consensus 422 ~~~~~-~~h~~~V~~~~~~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~ 483 (496)
.+... .+ ..+..+++++++. .++++.. .++.|.++|.. +++.+++++
T Consensus 323 v~~~i~vg--~~~~~lavs~D~~~~ly~tn~-------~~~~VsViD~~------t~k~~~~i~ 371 (386)
T 3sjl_D 323 RLAKFEMG--HEIDSINVSQDEKPLLYALST-------GDKTLYIHDAE------SGEELRSVN 371 (386)
T ss_dssp EEEEEEEE--EEECEEEECSSSSCEEEEEET-------TTTEEEEEETT------TCCEEEEEC
T ss_pred EEEEEECC--CCcceEEECCCCCeEEEEEcC-------CCCeEEEEECC------CCcEEEEec
Confidence 22222 22 2688999999986 5555433 35999999998 555555544
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.29 E-value=4e-09 Score=100.86 Aligned_cols=242 Identities=11% Similarity=-0.016 Sum_probs=148.9
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-------CCCcceeeeecCC
Q 010997 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-------QDNAEFALAMCPT 207 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-------~~~~v~~l~~~p~ 207 (496)
.++++| +++.|+.+. .++.|.+||..+.. ....+.-. .. .-..+.|+|+
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~------------~~~~i~~~~~~~~~~g~-~p~~~~~spD 135 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL------------PIADIELPDAPRFDVGP-YSWMNANTPN 135 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCc------------EEEEEECCCccccccCC-CccceEECCC
Confidence 899999 777777664 36789999998762 22222111 11 2358899999
Q ss_pred CCceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee-eecCCCceeEE
Q 010997 208 EPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDV 284 (496)
Q Consensus 208 ~~~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l 284 (496)
|++|+.+.. +++|.++| .+++.. .. +. .. .++
T Consensus 136 G~~l~v~n~~~~~~v~viD-~t~~~~----------------------------------------~~~i~-~~---~~~ 170 (373)
T 2mad_H 136 NADLLFFQFAAGPAVGLVV-QGGSSD----------------------------------------DQLLS-SP---TCY 170 (373)
T ss_pred CCEEEEEecCCCCeEEEEE-CCCCEE----------------------------------------eEEcC-CC---ceE
Confidence 999988764 57899999 765331 11 11 01 124
Q ss_pred EEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-----cCCCC-eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDAD-LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
.+.|.+...+++.+.||.+.++|. +++ ...... ....+ .....+.+ ++..++..+..+.+.+.|+....
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~--~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~- 245 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGG--AAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAG- 245 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCc--EEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCc-
Confidence 556777677888889999999999 665 221110 11122 12345666 34443333467899999997521
Q ss_pred CCCCCCceEecc----------CCCCEEEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCCcccCCCCCCCCCC
Q 010997 359 NGVGSPINKFEG----------HSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYP 419 (496)
Q Consensus 359 ~~~~~~~~~~~~----------h~~~i~~l~~sp~~~~llas~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~ 419 (496)
...+..+.. .......+.++|++..++++... ++.|.++|+.+.
T Consensus 246 ---~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-------------- 308 (373)
T 2mad_H 246 ---ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-------------- 308 (373)
T ss_pred ---ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--------------
Confidence 111222211 12334458899999888765531 357999999874
Q ss_pred CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH
Q 010997 420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE 481 (496)
Q Consensus 420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~ 481 (496)
+.+..+. -......++|+|++..+++++.. .++.|.+||+. +++.+.+
T Consensus 309 -~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~------~~~~V~ViD~~------t~~vv~~ 356 (373)
T 2mad_H 309 -QTSSQIS-LGHDVDAISVAQDGGPDLYALSA------GTEVLHIYDAG------AGDQDQS 356 (373)
T ss_pred -EEEEEEE-CCCCcCeEEECCCCCeEEEEEcC------CCCeEEEEECC------CCCEEee
Confidence 3333332 12357899999999845554332 25999999998 5555555
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.28 E-value=1.2e-10 Score=122.50 Aligned_cols=223 Identities=11% Similarity=-0.017 Sum_probs=136.4
Q ss_pred cceeeeecCCCCceEEecCC-----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCee
Q 010997 198 AEFALAMCPTEPYVLSGGKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 272 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (496)
.+.+++|+|||++|+.++.+ ..|++||+.++... .
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~----------------------------------------~ 203 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL----------------------------------------A 203 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE----------------------------------------E
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC----------------------------------------C
Confidence 57789999999998876543 46999999865321 1
Q ss_pred eeecCCCceeEEEEccCCCceEEEEcCCC--------------eEEEEEccCCCccceeeec--cCCCCeEEEEecCCCC
Q 010997 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDS--------------CLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDD 336 (496)
Q Consensus 273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~ 336 (496)
...+...+..++|+|+ ..++++ +.++ .|.+|++.++.......+. .+...+..+.|+| ++
T Consensus 204 -~~~~~~~~~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG 279 (741)
T 1yr2_A 204 -DELKWVKFSGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DG 279 (741)
T ss_dssp -EEEEEEESCCCEESTT-SEEEEE-ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TS
T ss_pred -ccCCCceeccEEEECC-CEEEEE-EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CC
Confidence 1111112357899999 554444 4433 3889998766522122222 2334588999999 89
Q ss_pred cEEEEEcCCC-----cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCcc
Q 010997 337 NLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKK 408 (496)
Q Consensus 337 ~~l~sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~i~iwd~~~~~~~ 408 (496)
.+|+..+.++ .|.+||+.+.. ..+...+..+...+.... +|++..|++.... ++.|.+||+....
T Consensus 280 ~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-- 352 (741)
T 1yr2_A 280 RWVVITSSEGTDPVNTVHVARVTNGK----IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-- 352 (741)
T ss_dssp CEEEEEEECTTCSCCEEEEEEEETTE----ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS--
T ss_pred CEEEEEEEccCCCcceEEEEECCCCC----CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc--
Confidence 8888776543 89999998610 021555655655555554 4888876544432 3459999987631
Q ss_pred cCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh-ccc
Q 010997 409 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKA 487 (496)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~-h~~ 487 (496)
.........+...+.+++|. +..++++...| +..+||.+.. .+..+..+.. +.+
T Consensus 353 -----------~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~~-----~g~~~~~l~~~~~~ 407 (741)
T 1yr2_A 353 -----------PRFDTVVPESKDNLESVGIA--GNRLFASYIHD-------AKSQVLAFDL-----DGKPAGAVSLPGIG 407 (741)
T ss_dssp -----------CEEEEEECCCSSEEEEEEEE--BTEEEEEEEET-------TEEEEEEEET-----TSCEEEECBCSSSC
T ss_pred -----------cccEEEecCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEeC-----CCCceeeccCCCCe
Confidence 01122234445556678887 55677777665 8877776641 1222333433 255
Q ss_pred eEEEeccCC
Q 010997 488 HVISCTSKP 496 (496)
Q Consensus 488 ~v~~~~~sP 496 (496)
.|..++++|
T Consensus 408 ~v~~~~~s~ 416 (741)
T 1yr2_A 408 SASGLSGRP 416 (741)
T ss_dssp EEEEEECCB
T ss_pred EEEEeecCC
Confidence 677777765
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.3e-10 Score=106.21 Aligned_cols=222 Identities=10% Similarity=0.098 Sum_probs=142.0
Q ss_pred ceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 199 EFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 199 v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
..+..|+|+ +.++++...++.|..||..++.. ..+ ..
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------------------~~~-~~ 52 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------------------------------------QRV-TM 52 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------------------------EEE-EC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------------------------------------EEE-eC
Confidence 458899996 45666777889999999875422 111 23
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc--CCCCeEEEEecCCCCcEEEEEcCC---------C
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSAD---------N 346 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l~sgs~d---------g 346 (496)
...+.++++++++ .++++ . ++.|.+||..+++...+..... ....++.++++| +++++++.... .
T Consensus 53 ~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~ 128 (297)
T 3g4e_A 53 DAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERH 128 (297)
T ss_dssp SSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTT
T ss_pred CCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCC
Confidence 4578999999998 54444 3 5689999988765211111111 124578999999 88876654321 2
Q ss_pred cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC-CCCcccCCCCCCCCCCCeeEEE
Q 010997 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-KVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
.-.||.+.. ...+..+..+......++|+|+++.++++.+.++.|.+||+. ..+... ....+..
T Consensus 129 ~~~l~~~d~------~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~~ 193 (297)
T 3g4e_A 129 QGALYSLFP------DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---------NRRSVYK 193 (297)
T ss_dssp CEEEEEECT------TSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------EEEEEEE
T ss_pred CcEEEEEEC------CCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---------CcEEEEE
Confidence 345555443 112223333445578999999999887788878999999974 211110 0123333
Q ss_pred ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
+..+......+++.++|. +.++... ++.|.+|++. +++.+..+..+...+++++|.
T Consensus 194 ~~~~~~~p~g~~~d~~G~-lwva~~~-------~~~v~~~d~~------tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 194 LEKEEQIPDGMCIDAEGK-LWVACYN-------GGRVIRLDPV------TGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp CCGGGCEEEEEEEBTTSC-EEEEEET-------TTEEEEECTT------TCCEEEEEECSSSBEEEEEEE
T ss_pred CCCCCCCCCeeEECCCCC-EEEEEcC-------CCEEEEEcCC------CceEEEEEECCCCCceEEEEe
Confidence 333445678899999885 5554433 3789999987 466666666666678888885
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.24 E-value=4.4e-09 Score=97.88 Aligned_cols=230 Identities=9% Similarity=0.070 Sum_probs=146.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+...........|+|+...+++++..++.|..|+.... ...+..+.. .+.+++++++|+++++.
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~--------------~~~~~~~~~-~~~gl~~d~dG~l~v~~ 103 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT--------------VDVLLDATA-FTNGNAVDAQQRLVHCE 103 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC--------------EEEEEESCS-CEEEEEECTTSCEEEEE
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC--------------EEEEeCCCC-ccceeeECCCCCEEEEE
Confidence 344455667789999944447888888999999987322 123333444 47899999999876666
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCce
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~ 293 (496)
..++.|.+|+.+ +...... ....+ ....++++++.++| .+
T Consensus 104 ~~~~~v~~~~~~-g~~~~~~-------------------------------------~~~~~~~~~~~~~i~~d~dG-~l 144 (305)
T 3dr2_A 104 HGRRAITRSDAD-GQAHLLV-------------------------------------GRYAGKRLNSPNDLIVARDG-AI 144 (305)
T ss_dssp TTTTEEEEECTT-SCEEEEE-------------------------------------CEETTEECSCCCCEEECTTS-CE
T ss_pred CCCCEEEEECCC-CCEEEEE-------------------------------------eccCCCccCCCCCEEECCCC-CE
Confidence 666889999875 2211000 00000 11346789999998 66
Q ss_pred EEE----EcC-------------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC------CcEEE
Q 010997 294 FCS----VGD-------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRM 350 (496)
Q Consensus 294 l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d------g~i~i 350 (496)
+++ |.. .+.|..||..+++ ..... .....+.++|+| ++..|+.+... +.|.+
T Consensus 145 ~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--~~~~~--~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~ 219 (305)
T 3dr2_A 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--LQRMA--DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITA 219 (305)
T ss_dssp EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--CEEEE--EESSEEEEEECT-TSSEEEEEECCC---CCCEEEE
T ss_pred EEeCcCCCccccccccccccccCCCeEEEEcCCCCc--EEEEe--cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEE
Confidence 665 332 2567777776665 22222 345678999999 88877666554 78999
Q ss_pred EeCCCCCCCCCCCCce---Ee-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997 351 FDRRNLTSNGVGSPIN---KF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~---~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (496)
||+.. .. +. .+ .........++++++|. |++ +..+ .|.+|+... ..+...
T Consensus 220 ~~~~~------~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv-~~~~-gv~~~~~~g----------------~~~~~~ 273 (305)
T 3dr2_A 220 FAWRD------GA-LHDRRHFASVPDGLPDGFCVDRGGW-LWS-SSGT-GVCVFDSDG----------------QLLGHI 273 (305)
T ss_dssp EEEET------TE-EEEEEEEECCSSSCCCSEEECTTSC-EEE-CCSS-EEEEECTTS----------------CEEEEE
T ss_pred EEecC------CC-ccCCeEEEECCCCCCCeEEECCCCC-EEE-ecCC-cEEEECCCC----------------CEEEEE
Confidence 99875 22 11 11 11234456789999998 554 4444 499999753 223333
Q ss_pred cCCCCCcceEEecCCCCcEEEEec
Q 010997 427 AGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 427 ~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
..+. .+.+++|.+++..|+++++
T Consensus 274 ~~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 274 PTPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp ECSS-CCCEEEECTTSCEEEEEET
T ss_pred ECCC-ceeEEEEeCCCCEEEEEcC
Confidence 3333 5889999998888887654
No 212
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.23 E-value=3.3e-10 Score=103.72 Aligned_cols=182 Identities=8% Similarity=-0.003 Sum_probs=129.1
Q ss_pred CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC-CceeEEE
Q 010997 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVT 285 (496)
Q Consensus 207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 285 (496)
.+++|++++.|+.|.+||.++++.. ..+..+. ..+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~----------------------------------------w~~~~~~~~~~~~~~ 43 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV----------------------------------------WEYPLEKGWECNSVA 43 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE----------------------------------------EEEECCTTCCCCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE----------------------------------------EEeCCCccCCCcCeE
Confidence 3578999999999999998766543 3333343 4678899
Q ss_pred EccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCC
Q 010997 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~ 363 (496)
+.|+| ++++ +.++.|..||. +++ .+..+..+ ...+.++.+.| +++++++.+. ++.|..+|.. ++
T Consensus 44 ~~pdG-~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-------Gk 109 (276)
T 3no2_A 44 ATKAG-EILF--SYSKGAKMITR-DGR--ELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNMK-------GE 109 (276)
T ss_dssp ECTTS-CEEE--ECBSEEEEECT-TSC--EEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTT-------SC
T ss_pred ECCCC-CEEE--eCCCCEEEECC-CCC--EEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeCC-------CC
Confidence 99998 6777 35788999998 666 45555443 35788999999 8999998877 7788888753 56
Q ss_pred CceEecc------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997 364 PINKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 437 (496)
Q Consensus 364 ~~~~~~~------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 437 (496)
.+.++.. +......+++.++|. ++++...++.|.+||.. + +.+..+... ..+.++.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G---------------~~~w~~~~~-~~~~~~~ 171 (276)
T 3no2_A 110 VLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-G---------------QLLNSVKLS-GTPFSSA 171 (276)
T ss_dssp EEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-S---------------CEEEEEECS-SCCCEEE
T ss_pred EEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-C---------------CEEEEEECC-CCcccee
Confidence 6655541 222345667889998 56788889999999987 4 345555443 3456778
Q ss_pred ecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 438 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 438 ~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
..+++..++ +++ .++.|..+|..
T Consensus 172 ~~~~g~~~v-~~~-------~~~~v~~~d~~ 194 (276)
T 3no2_A 172 FLDNGDCLV-ACG-------DAHCFVQLNLE 194 (276)
T ss_dssp ECTTSCEEE-ECB-------TTSEEEEECTT
T ss_pred EcCCCCEEE-EeC-------CCCeEEEEeCc
Confidence 888776554 332 34788888887
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.16 E-value=3.4e-09 Score=102.81 Aligned_cols=192 Identities=9% Similarity=0.054 Sum_probs=127.9
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
...|+|+++++++++...++.|++||..++... .+....
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------------------------~~~~~~ 171 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------------------------TVHPGF 171 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------------------------EEEETC
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------------------------EeeccC
Confidence 578999999998888888899999998754321 111112
Q ss_pred CceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCccceeee----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVE----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd 352 (496)
.... ++|++++ ..|+++..++ .|.++|...... .... ......+.+++++| ++..|+.+..++.|..||
T Consensus 172 ~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d 246 (409)
T 3hrp_A 172 KGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFN 246 (409)
T ss_dssp CBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEE
T ss_pred CCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEE
Confidence 2233 8999998 5677766655 899998876552 2222 22456788999999 444555577789999999
Q ss_pred CCCCCCCCCCCCceEe-----ccCCCCE-E-EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 353 RRNLTSNGVGSPINKF-----EGHSAAV-L-CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 353 ~~~~~~~~~~~~~~~~-----~~h~~~i-~-~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
... +. ...+ .++...- . .++|+|++..|+++...++.|+.|+.... +..
T Consensus 247 ~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----------------~~~ 302 (409)
T 3hrp_A 247 VKT------QE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----------------CEW 302 (409)
T ss_dssp TTT------CC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------------EEE
T ss_pred CCC------CC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----------------EEE
Confidence 886 32 2222 1222222 3 99999976668888888899999987642 011
Q ss_pred ecCC---------------CCCcceEEecCCCCcEEEEec-CCCCCCCCCCeEEEeecC
Q 010997 426 HAGH---------------RDKVVDFHWNASDPWTVVSVS-DDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 426 ~~~h---------------~~~V~~~~~~p~~~~l~~s~s-~d~~sgg~Dg~i~iw~~~ 468 (496)
..++ -.....++++|++. ++++-+ . ++.|+.|++.
T Consensus 303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~-------~~~I~~~~~~ 353 (409)
T 3hrp_A 303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFK-------GYCLRKLDIL 353 (409)
T ss_dssp EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTT-------TCEEEEEETT
T ss_pred EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCC-------CCEEEEEECC
Confidence 1111 13467899999887 565543 3 4899999965
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.16 E-value=8.1e-10 Score=104.66 Aligned_cols=252 Identities=11% Similarity=-0.025 Sum_probs=150.2
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC------CCcceeeeecCCC
Q 010997 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE 208 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~------~~~v~~l~~~p~~ 208 (496)
.+.++| +++.++.+. .++.|.+||+.+. +....+..+. ......++++|||
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~------------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG 135 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------LPIADIELPDAPRFSVGPRVHIIGNCASS 135 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------CEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------CEEEEEECCCccccccCCCcceEEEcCCC
Confidence 799999 666666664 3678999999998 4455554320 0124689999999
Q ss_pred CceEEecC--CCcEEE--EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEE
Q 010997 209 PYVLSGGK--DKSVVL--WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (496)
Q Consensus 209 ~~l~sg~~--Dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (496)
++|+.+.. +..|.+ +|..+ . ..+.. .+ ++
T Consensus 136 k~lyVan~~~~~~v~V~~iD~~t-v------------------------------------------~~i~v-~~---~~ 168 (368)
T 1mda_H 136 ACLLFFLFGSSAAAGLSVPGASD-D------------------------------------------QLTKS-AS---CF 168 (368)
T ss_dssp SCEEEEECSSSCEEEEEETTTEE-E------------------------------------------EEEEC-SS---CC
T ss_pred CEEEEEccCCCCeEEEEEEchhh-c------------------------------------------eEEEC-CC---ce
Confidence 99988864 467888 88864 1 11110 00 11
Q ss_pred EEccCCCceEEEEcCCCeEEEEEccC-----CCccce--eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDARV-----GTSPVI--KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~--~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
.+.|++...+++.+.||.+.+.|+.+ ++.... ........+. . .+ ++..++..+. +.|.+.|+....
T Consensus 169 ~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~ 242 (368)
T 1mda_H 169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAG 242 (368)
T ss_dssp CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSC
T ss_pred EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCc
Confidence 23456656677778888888888876 221000 0011112233 3 55 4455555555 999999986411
Q ss_pred CCCCCCCceEecc-------C---CCCEEEEEEcCCCCCEEEEEe-C-------CCcEEEEECCCCCcccCCCCCCCCCC
Q 010997 358 SNGVGSPINKFEG-------H---SAAVLCVQWSPDKSSVFGSSA-E-------DGLLNIWDYEKVGKKVEQGPRTTNYP 419 (496)
Q Consensus 358 ~~~~~~~~~~~~~-------h---~~~i~~l~~sp~~~~llas~~-~-------dg~i~iwd~~~~~~~~~~~~~~~~~~ 419 (496)
...+..+.. + ......++|+|++.+++++.. . ++.+.++|+.+.
T Consensus 243 ----~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-------------- 304 (368)
T 1mda_H 243 ----ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-------------- 304 (368)
T ss_dssp ----CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--------------
T ss_pred ----ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC--------------
Confidence 111111110 0 111122689999998886644 2 235669999885
Q ss_pred CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997 420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495 (496)
Q Consensus 420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s 495 (496)
+.+..+... .....++|+|++..+++++.. .++.|.++|+. +.+.++++.....+ ..++++
T Consensus 305 -~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~------~~~~VsVID~~------t~kvv~~I~vg~~P-~~i~~~ 365 (368)
T 1mda_H 305 -QTSGPISNG-HDSDAIIAAQDGASDNYANSA------GTEVLDIYDAA------SDQDQSSVELDKGP-ESLSVQ 365 (368)
T ss_dssp -CEEECCEEE-EEECEEEECCSSSCEEEEEET------TTTEEEEEESS------SCEEEEECCCCSCC-CEEECC
T ss_pred -eEEEEEECC-CCcceEEECCCCCEEEEEccC------CCCeEEEEECC------CCcEEEEEECCCCC-CEEEee
Confidence 222222111 147899999999888876551 24999999999 66777666655443 444443
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.15 E-value=4.4e-09 Score=101.31 Aligned_cols=245 Identities=10% Similarity=0.025 Sum_probs=147.9
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecC------CCCcceeeeecCCC
Q 010997 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH------QDNAEFALAMCPTE 208 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h------~~~~v~~l~~~p~~ 208 (496)
.++++| +++.|+.+. .++.|.++|..+. +....+.-. ....-..+.++|+|
T Consensus 122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~------------~vv~~I~v~g~~r~~~g~~P~~~~~spDG 188 (426)
T 3c75_H 122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTF------------LPIADIELPDAPRFLVGTYQWMNALTPDN 188 (426)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGSEECTTS
T ss_pred ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCC------------cEEEEEECCCccccccCCCcceEEEcCCC
Confidence 799999 666665554 3678999999988 333333211 01124689999999
Q ss_pred CceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 209 PYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 209 ~~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
++|+.+.. +++|.+.|+.+.+.. ..+.-- . +...
T Consensus 189 k~lyV~n~~~~~~VsVID~~t~kvv----------------------------------------~~I~v~--g--~~~~ 224 (426)
T 3c75_H 189 KNLLFYQFSPAPAVGVVDLEGKTFD----------------------------------------RMLDVP--D--CYHI 224 (426)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEE----------------------------------------EEEECC--S--EEEE
T ss_pred CEEEEEecCCCCeEEEEECCCCeEE----------------------------------------EEEEcC--C--ceee
Confidence 99888764 678999999865432 111110 0 1234
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccceee----eccCCCC-eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKV----EKAHDAD-LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~-v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
.|++...+++.+.||.+.+.+...++ .... +.....+ ...+.+.+ ++..++..+..+.|.+.|+....
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~--v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~---- 297 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGE--TKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEG---- 297 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTC--CEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSC----
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCc--EEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCc----
Confidence 45555667777788888888884443 2211 1111111 12356788 66666666778999999986511
Q ss_pred CCCceEec----------cCCCCEEEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997 362 GSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (496)
Q Consensus 362 ~~~~~~~~----------~h~~~i~~l~~sp~~~~llas~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 422 (496)
...+..+. ........++++|++.+++++... ++.|.+.|+.+. +.
T Consensus 298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---------------kv 362 (426)
T 3c75_H 298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---------------ER 362 (426)
T ss_dssp EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------------CE
T ss_pred eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---------------eE
Confidence 00111110 001122236899999888876531 357999999885 22
Q ss_pred EEEecCCCCCcceEEecCCCC-cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997 423 FFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 482 (496)
Q Consensus 423 ~~~~~~h~~~V~~~~~~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l 482 (496)
+..+.. ......++|+|++. .++++... ++.|.|+|+. +.+.++++
T Consensus 363 v~~I~v-g~~P~gia~spDg~~~lyv~n~~-------s~~VsVID~~------t~kvv~tI 409 (426)
T 3c75_H 363 INKIEL-GHEIDSINVSQDAEPLLYALSAG-------TQTLHIYDAA------TGEELRSV 409 (426)
T ss_dssp EEEEEE-EEEECEEEECCSSSCEEEEEETT-------TTEEEEEETT------TCCEEEEE
T ss_pred EEEEEC-CCCcCeEEEccCCCEEEEEEcCC-------CCeEEEEECC------CCCEEEEe
Confidence 322221 12478999999998 55543323 4999999998 45555443
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.11 E-value=1.1e-09 Score=114.12 Aligned_cols=201 Identities=12% Similarity=0.111 Sum_probs=127.6
Q ss_pred cceeeeecCCCCceEE-----ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCee
Q 010997 198 AEFALAMCPTEPYVLS-----GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 272 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~s-----g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (496)
.+.+++|+|||++||- |+.+..|++||+.++.... .
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------------------------------------~ 170 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------------------------------------T 170 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------------------------------------E
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------------------------------------c
Confidence 5778899999998873 3334689999998754210 0
Q ss_pred eeecCCCceeEEEEccCCCceEEEEcCCC-------------eEEEEEccCCCccceeee--cc-CCCCeEEEEecCCCC
Q 010997 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------------CLILWDARVGTSPVIKVE--KA-HDADLHCVDWNPLDD 336 (496)
Q Consensus 273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------------~i~iwd~~~~~~~~~~~~--~~-~~~~v~~i~~sp~~~ 336 (496)
.+.. .....++|+ ++ ..|+.++.+. .|++|++.+........+ .. |...+..+.|+| ++
T Consensus 171 ~~~~--~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg 245 (693)
T 3iuj_A 171 PLKD--VKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DD 245 (693)
T ss_dssp EEEE--EESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TS
T ss_pred ccCC--ceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CC
Confidence 1111 113577899 88 5566665553 499999877653222222 23 445678999999 88
Q ss_pred cEEEEEcC----CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCccc
Q 010997 337 NLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKV 409 (496)
Q Consensus 337 ~~l~sgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d---g~i~iwd~~~~~~~~ 409 (496)
.+|+.... +..|.++|+.... .....+..+....... |++++..+++.+..+ +.|..+|+......
T Consensus 246 ~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~- 318 (693)
T 3iuj_A 246 RFLLISAANSTSGNRLYVKDLSQEN-----APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA- 318 (693)
T ss_dssp CEEEEEEESSSSCCEEEEEETTSTT-----CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-
T ss_pred CEEEEEEccCCCCcEEEEEECCCCC-----CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-
Confidence 87754332 3589999998722 2455666666666555 677777777666554 67999998874210
Q ss_pred CCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 410 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
....+..|...+. .|++++..++++..++ .-..|++|++.
T Consensus 319 ------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~-----g~~~l~~~d~~ 358 (693)
T 3iuj_A 319 ------------HWRDLIPERQQVL--TVHSGSGYLFAEYMVD-----ATARVEQFDYE 358 (693)
T ss_dssp ------------GCEEEECCCSSCE--EEEEETTEEEEEEEET-----TEEEEEEECTT
T ss_pred ------------ccEEEecCCCCEE--EEEEECCEEEEEEEEC-----CeeEEEEEECC
Confidence 0112334555554 8888888888766654 01268888876
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.09 E-value=3.6e-08 Score=92.58 Aligned_cols=196 Identities=12% Similarity=0.154 Sum_probs=124.8
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEEecC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
.+...|.++++.| +++++++. .+ .|.+||..++.... ..... +.....+..++++|+|+++++...
T Consensus 87 ~~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~----------~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~ 153 (326)
T 2ghs_A 87 ALPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTL----------HAELESDLPGNRSNDGRMHPSGALWIGTMG 153 (326)
T ss_dssp ECSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEE----------EECSSTTCTTEEEEEEEECTTSCEEEEEEE
T ss_pred ECCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEE----------EeeCCCCCCCCCCCCEEECCCCCEEEEeCC
Confidence 3456799999999 77777654 44 49999987762110 00000 111224788999999986665432
Q ss_pred C----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997 217 D----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (496)
Q Consensus 217 D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (496)
+ +...||.+.++.. ..+..+......++|+|++..
T Consensus 154 ~~~~~~~~~l~~~~~g~~-----------------------------------------~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 154 RKAETGAGSIYHVAKGKV-----------------------------------------TKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp TTCCTTCEEEEEEETTEE-----------------------------------------EEEEEEESSEEEEEECTTSCE
T ss_pred CcCCCCceEEEEEeCCcE-----------------------------------------EEeeCCCcccCCeEEcCCCCE
Confidence 1 2334444332211 111122234678999999954
Q ss_pred eEEEEcCCCeEEEEEcc--CC-Ccc---ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997 293 EFCSVGDDSCLILWDAR--VG-TSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (496)
Q Consensus 293 ~l~s~~~dg~i~iwd~~--~~-~~~---~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 366 (496)
++++.+.++.|.+||+. ++ ... ....+......+..+++++ ++++.++...++.|..||.. +..+.
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-------g~~~~ 264 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-------GNHIA 264 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-------CCEEE
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-------CCEEE
Confidence 55666778999999986 44 211 1112222345678899999 78877777677889999983 46677
Q ss_pred EeccCCCCEEEEEEc-CCCCCEEEEEeCCC
Q 010997 367 KFEGHSAAVLCVQWS-PDKSSVFGSSAEDG 395 (496)
Q Consensus 367 ~~~~h~~~i~~l~~s-p~~~~llas~~~dg 395 (496)
.+..+...+++++|+ |++..|+++...++
T Consensus 265 ~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 777777789999998 88887776666553
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.08 E-value=7.4e-09 Score=98.08 Aligned_cols=249 Identities=8% Similarity=0.048 Sum_probs=144.2
Q ss_pred CceeEEEecCCCCcEEEEEe--CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC--
Q 010997 141 GEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-- 216 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-- 216 (496)
..+..++++| +++++++.. .++.++||.+..+. .... .. .. ....+|.. .+.+++++++++++++-..
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~-p~--~~--~~~~~~~~-~p~gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDG-LIPF-PP--QS--GNAIITFD-TVLGIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTE-EEES-CC--CC--SSCCCCCS-CEEEEEECSSSEEEEEECHHH
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCC-eecC-CC--cc--cCccccee-EeeEEEEcCCCcEEEEcCCCC
Confidence 6789999999 788888864 23435666654321 1100 00 00 01123334 4789999999886665433
Q ss_pred ---CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997 217 ---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (496)
Q Consensus 217 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (496)
++.|.+||+.++......... .....+...+.++++++++...
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~~~~----------------------------------~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVIYLP----------------------------------PPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEEECC----------------------------------TTTSCTTCCCCEEEEETTTTEE
T ss_pred cCCCCeEEEEECCCCeEEEEEECC----------------------------------hhhcccccccceEEEecCCCEE
Confidence 579999999865421111000 0000123456889999865466
Q ss_pred EEEEc---CCCeEEEEEccCCCccceeeeccC-----------------------------CCCeEEEEecCCCCcEEEE
Q 010997 294 FCSVG---DDSCLILWDARVGTSPVIKVEKAH-----------------------------DADLHCVDWNPLDDNLILT 341 (496)
Q Consensus 294 l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~v~~i~~sp~~~~~l~s 341 (496)
+++-. .++.|.+||+.+++ .......| ...++.|+|+| ++..|+.
T Consensus 135 yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~ 211 (343)
T 2qe8_A 135 YISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYL 211 (343)
T ss_dssp EEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEE
T ss_pred EEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEE
Confidence 67766 68899999998665 22222111 12468899999 8887777
Q ss_pred EcCCC-cEEEEeCCCCCCCCC--CCCce--EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC
Q 010997 342 GSADN-SVRMFDRRNLTSNGV--GSPIN--KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 416 (496)
Q Consensus 342 gs~dg-~i~iwd~~~~~~~~~--~~~~~--~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~ 416 (496)
+..++ .|..++......... ..... ...++......++++++|. ++++...++.|.+||.... +
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G-~--------- 280 (343)
T 2qe8_A 212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR-A--------- 280 (343)
T ss_dssp EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT-E---------
T ss_pred EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC-C---------
Confidence 76665 555555321110000 00000 1123444567899999986 7878888999999998332 1
Q ss_pred CCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997 417 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s 450 (496)
...+.. ..+...+.+++|.+++. ++++.+
T Consensus 281 ---~~~~~~-~~~~~~p~~va~~~~g~-l~v~~~ 309 (343)
T 2qe8_A 281 ---YKLLVT-DEKLSWTDSFNFGSDGY-LYFDCN 309 (343)
T ss_dssp ---EEEEEE-CGGGSCEEEEEECTTSC-EEEEEC
T ss_pred ---EEEEEE-CCceecCCeeEECCCCc-EEEEeC
Confidence 012221 11244678999999765 555444
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=6.2e-08 Score=92.31 Aligned_cols=234 Identities=11% Similarity=0.043 Sum_probs=140.2
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe------cCCCCcceeeeecCCCCceEEecCC------
Q 010997 150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAMCPTEPYVLSGGKD------ 217 (496)
Q Consensus 150 p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~------~h~~~~v~~l~~~p~~~~l~sg~~D------ 217 (496)
+....++++|..++.|+|+|+.+.+... +...+++ ......-..+...|+| .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p--------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREP--------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSC--------EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCc--------eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 5455567778889999999997663222 2222331 0000012456778999 77776655
Q ss_pred CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (496)
Q Consensus 218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (496)
|.|.+.|.++.......... .....--.++.|+|++ +.+++.
T Consensus 164 g~v~vlD~~T~~v~~~~~~~-------------------------------------~~~~~~~Yd~~~~p~~-~~mvsS 205 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEID-------------------------------------RGDQYLAYDFWWNLPN-EVLVSS 205 (462)
T ss_dssp CEEEEECTTTCCEEEECCSB-------------------------------------CTTCCCCCCEEEETTT-TEEEEC
T ss_pred CeEEEEECCCCeEEEEEccC-------------------------------------CCCccccceEEECCCC-CEEEEc
Confidence 78999998765433221110 0011223468889998 566666
Q ss_pred c-------------------CCCeEEEEEccCCCccceeeeccC--CCCeEEEEe--cCCCCcEEEEEc------CCCcE
Q 010997 298 G-------------------DDSCLILWDARVGTSPVIKVEKAH--DADLHCVDW--NPLDDNLILTGS------ADNSV 348 (496)
Q Consensus 298 ~-------------------~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~i~~--sp~~~~~l~sgs------~dg~i 348 (496)
. .+.+|.+||+.+++ ....+... ......|.| +| ++.++.+++ .+++|
T Consensus 206 ~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 206 EWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp BCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEE
T ss_pred cCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceE
Confidence 3 47899999998765 34333321 123445544 99 777766655 56788
Q ss_pred EEEeCCCCCCCCCCCCceEe--c----------------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997 349 RMFDRRNLTSNGVGSPINKF--E----------------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 410 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~--~----------------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~ 410 (496)
.+|...... ......+ . +-......|.+||++++|+++.-..+.|.+||+...+.
T Consensus 283 ~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~--- 355 (462)
T 2ece_A 283 WLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK--- 355 (462)
T ss_dssp EEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS---
T ss_pred EEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC---
Confidence 766554200 1111111 0 00245788999999999998888899999999974311
Q ss_pred CCCCCCCCCCeeEEEe-cC-------C------CCCcceEEecCCCCcEEEEe
Q 010997 411 QGPRTTNYPAGLFFQH-AG-------H------RDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~-~~-------h------~~~V~~~~~~p~~~~l~~s~ 449 (496)
..++... .| | ...-..++++|+|++++++.
T Consensus 356 ---------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 356 ---------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ---------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ---------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1222222 11 1 01357899999999999876
No 220
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.02 E-value=1.6e-07 Score=89.78 Aligned_cols=269 Identities=7% Similarity=-0.042 Sum_probs=148.8
Q ss_pred CCcEEEEEeC--CC---cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec----------C
Q 010997 152 NTKIVATHTD--SP---DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------K 216 (496)
Q Consensus 152 ~~~~lat~~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~----------~ 216 (496)
+++.+..... .. .|.+||..++ +.+..+..-.. + .++++|++++|+.+. .
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~------------~~~~~i~~g~~-p--~i~~spDg~~lyv~n~~~~~~~rg~~ 95 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSG------------SILGHVNGGFL-P--NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCC------------eEEEEecCCCC-C--CeEECCCCCEEEEEeccccccccCCC
Confidence 5565555543 22 8899999887 33344443222 2 899999999888775 3
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
++.|.+||..+......... ....... +......+.|+|++ .+|+.
T Consensus 96 ~~~v~viD~~t~~~~~~i~~-------------------------------~~~~~~~--~g~~p~~~~~spDG-~~l~v 141 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIEL-------------------------------PDAPRFD--VGPYSWMNANTPNN-ADLLF 141 (373)
T ss_pred CCeEEEEECCCCcEEEEEEC-------------------------------CCccccc--cCCCccceEECCCC-CEEEE
Confidence 67899999875432211100 0000000 01234578999999 45555
Q ss_pred Ec-C-CCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec----
Q 010997 297 VG-D-DSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---- 369 (496)
Q Consensus 297 ~~-~-dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---- 369 (496)
+. . ++.|.++| .+++ .... .. ... ++.+.|.....+++.+.||.+.++|. . +..+....
T Consensus 142 ~n~~~~~~v~viD-~t~~--~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~------g~~~~~~~~~~~ 207 (373)
T 2mad_H 142 FQFAAGPAVGLVV-QGGS--SDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A------GGAAGAGLVGAM 207 (373)
T ss_pred EecCCCCeEEEEE-CCCC--EEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C------CcEEEEEecccc
Confidence 54 3 58899999 8776 3333 32 212 34455534566777888999999999 6 44432211
Q ss_pred -cCCCC-EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 370 -GHSAA-VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 370 -~h~~~-i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
....+ .....+.+++..++... ..+.+.+.|+......... .... .. .......-.......++++|++..+++
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~-~~~~-~~-~~~~~~~~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKA-PIDA-LS-GGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred ccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEee-eeee-cC-CcccccceecCceEeEEECCCCCEEEE
Confidence 11222 23356677766554444 5789999998653111100 0000 00 000000001122344788999888887
Q ss_pred EecCCCCCC----CCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 448 SVSDDCDST----GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 448 s~s~d~~sg----g~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
+.... .. ..++.|.++|+. +.+.++++... .....++|+|
T Consensus 284 ~~~~~--~~~~~~~~~~~V~VID~~------t~~vv~~i~~g-~~p~~i~~s~ 327 (373)
T 2mad_H 284 LTSEQ--SAWKLHAAAKEVTSVTGL------VGQTSSQISLG-HDVDAISVAQ 327 (373)
T ss_pred EeccC--CcccccCCCCeEEEEECC------CCEEEEEEECC-CCcCeEEECC
Confidence 65421 00 124689999998 56665665422 2356677665
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.01 E-value=3.8e-10 Score=108.06 Aligned_cols=183 Identities=14% Similarity=0.064 Sum_probs=98.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
++..|++++.||.|+.||..++ +....+.. + .+.+..+..++..+++++.||.|..||..++...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG------------~~~W~~~~--~-~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG------------SIKWTLKE--D-PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC------------CEEEEEEC--C-CSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCC------------CEEEEecC--C-CceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence 4568889999999999999988 44445554 2 3556666677878888899999999999876543
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (496)
....... ... ....++ +. .+ ..+++++.|+.|+.||.+++
T Consensus 73 w~~~~~~---------------------------------~~~-~~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG 112 (369)
T 2hz6_A 73 TKLPFTI---------------------------------PEL-VQASPC----RS-SD-GILYMGKKQDIWYVIDLLTG 112 (369)
T ss_dssp EECSCCH---------------------------------HHH-HTTCSC----C-------CCCCEEEEEEEEECCC--
T ss_pred eeeeccC---------------------------------ccc-cccCce----Ee-cC-CEEEEEeCCCEEEEEECCCC
Confidence 2211100 000 001111 11 22 35777888999999999988
Q ss_pred CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC---CCEE
Q 010997 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVF 388 (496)
Q Consensus 312 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~---~~ll 388 (496)
+ ....+..+. ...++| ++..+++++.|+.|+.||.++ ++.+..+..+. .....++++. ..++
T Consensus 113 ~--~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~t------G~~~W~~~~~~--~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 113 E--KQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKT------RELRWNATYFD--YAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ---------------------------EEEEEEEEEEECCCSSS------SSCCCEEEEEE--ECCBCCCCCTTCCCCEE
T ss_pred c--EEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCC------CCEEEeEeccc--ccCccccCCccccceEE
Confidence 7 333333332 245677 788889999999999999998 66665554221 1223334432 3354
Q ss_pred EEEeCCCcEEEEECCCC
Q 010997 389 GSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 389 as~~~dg~i~iwd~~~~ 405 (496)
+++.||.|..||..++
T Consensus 178 -~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 178 -VSNGDGLVVTVDSESG 193 (369)
T ss_dssp -EEETSCEEEEECTTTC
T ss_pred -EECCCCEEEEEECCCC
Confidence 6778999999999874
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.98 E-value=2.3e-08 Score=93.03 Aligned_cols=194 Identities=11% Similarity=0.040 Sum_probs=124.5
Q ss_pred cceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997 198 AEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (496)
Q Consensus 198 ~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (496)
...+..|+|+++ +++++..++.|..|+... . ...+..
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~-----------------------------------------~~~~~~ 83 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T-----------------------------------------VDVLLD 83 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C-----------------------------------------EEEEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C-----------------------------------------EEEEeC
Confidence 356899999988 677888889999998732 1 133444
Q ss_pred CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CCCCeEEEEecCCCCcEEEE----EcC----
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILT----GSA---- 344 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~s----gs~---- 344 (496)
+...+..+++++++ .++++...++.|.+||.. ++ ....... ....++.++++| ++.++++ |..
T Consensus 84 ~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~ 158 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQ--AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQ 158 (305)
T ss_dssp SCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGG
T ss_pred CCCccceeeECCCC-CEEEEECCCCEEEEECCC-CC--EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCcccccc
Confidence 55678999999998 666666666889999975 44 1111111 123567899999 8888886 442
Q ss_pred ---------CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC-----CCcEEEEECCCCCcccC
Q 010997 345 ---------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEKVGKKVE 410 (496)
Q Consensus 345 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~-----dg~i~iwd~~~~~~~~~ 410 (496)
.+.|..||..+ +.... +. .......++|+|++..|+++.+. .+.|.+|++...+ ..
T Consensus 159 ~~~~~~~~~~~~v~~~d~~~------g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~ 228 (305)
T 3dr2_A 159 GCPADPELAHHSVYRLPPDG------SPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LH 228 (305)
T ss_dssp SCCCCCSSSCEEEEEECSSS------CCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EE
T ss_pred ccccccccCCCeEEEEcCCC------CcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--cc
Confidence 25677787755 33322 22 34567899999999876655443 2789999987531 00
Q ss_pred CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
. ...+. .........+++.++|. +.++. . +.|.+|+..
T Consensus 229 --------~-~~~~~-~~~~~~pdgi~~d~~G~-lwv~~--------~-~gv~~~~~~ 266 (305)
T 3dr2_A 229 --------D-RRHFA-SVPDGLPDGFCVDRGGW-LWSSS--------G-TGVCVFDSD 266 (305)
T ss_dssp --------E-EEEEE-CCSSSCCCSEEECTTSC-EEECC--------S-SEEEEECTT
T ss_pred --------C-CeEEE-ECCCCCCCeEEECCCCC-EEEec--------C-CcEEEECCC
Confidence 0 11111 11233456789999887 44322 1 348999886
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.91 E-value=2.6e-08 Score=94.26 Aligned_cols=264 Identities=10% Similarity=0.042 Sum_probs=153.2
Q ss_pred ecCCCCcEEEEEeC-----CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-------
Q 010997 148 ELPQNTKIVATHTD-----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG------- 215 (496)
Q Consensus 148 ~~p~~~~~lat~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~------- 215 (496)
..| +++.+..... ++.|.+.|..+. +.+..+..-.. + .++++|+|++|+.+.
T Consensus 40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~------------~v~~~I~vG~~-P--~va~spDG~~lyVan~~~~r~~ 103 (386)
T 3sjl_D 40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAG------------RVIGMIDGGFL-P--NPVVADDGSFIAHASTVFSRIA 103 (386)
T ss_dssp CCC-CTTEEEEEECGGGCSSEEEEEEETTTT------------EEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETT
T ss_pred cCC-CCCEEEEEcCcccCCCCEEEEEECCCC------------eEEEEEECCCC-C--cEEECCCCCEEEEEcccccccc
Confidence 356 5555555544 679999999888 44555554333 3 499999999887765
Q ss_pred ---CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-------CCCceeEEE
Q 010997 216 ---KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-------HEDTVEDVT 285 (496)
Q Consensus 216 ---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~ 285 (496)
.++.|.+||..+.... ..+.- .......+.
T Consensus 104 ~G~~~~~VsviD~~t~~v~----------------------------------------~~I~v~~g~r~~~g~~P~~~a 143 (386)
T 3sjl_D 104 RGERTDYVEVFDPVTLLPT----------------------------------------ADIELPDAPRFLVGTYPWMTS 143 (386)
T ss_dssp EEEEEEEEEEECTTTCCEE----------------------------------------EEEEETTCCCCCBSCCGGGEE
T ss_pred cCCCCCEEEEEECCCCeEE----------------------------------------EEEECCCccccccCCCCceEE
Confidence 3678999999865432 11110 012355789
Q ss_pred EccCCCceEEEEc-CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997 286 FCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (496)
Q Consensus 286 ~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 364 (496)
|+|+|..++++.. .++.|.++|+.+.+ .+...... . |....|.....+++.+.||.+.+.++.... ..
T Consensus 144 ~spDGk~lyVan~~~~~~VsVID~~t~~--vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g-----~v 212 (386)
T 3sjl_D 144 LTPDGKTLLFYQFSPAPAVGVVDLEGKA--FKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG-----TP 212 (386)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSS-----CC
T ss_pred EcCCCCEEEEEEcCCCCeEEEEECCCCc--EEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCC-----eE
Confidence 9999954444443 37899999999887 44444221 1 122234255677788889999999987521 22
Q ss_pred ceEe----ccCCCCEE-EEEEc-CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe----cC-CCCCc
Q 010997 365 INKF----EGHSAAVL-CVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH----AG-HRDKV 433 (496)
Q Consensus 365 ~~~~----~~h~~~i~-~l~~s-p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~-h~~~V 433 (496)
.... ..-..++. ..+|. ++|+.++ .+.+|.|.+.|+......... + ..++.. .+ .....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~--vs~~g~V~v~d~~~~~~~v~~-------~-~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 213 EITHTEVFHPEDEFLINHPAYSQKAGRLVW--PTYTGKIHQIDLSSGDAKFLP-------A-VEALTEAERADGWRPGGW 282 (386)
T ss_dssp EEEECCCCSCTTSCBCSCCEEETTTTEEEE--EBTTSEEEEEECTTSSCEECC-------C-EESSCHHHHHTTEEECSS
T ss_pred EEeecceeccccccccccceeEcCCCcEEE--EeCCCEEEEEECCCCcceeec-------c-eeccccccccccccCCCc
Confidence 1111 11112222 24664 6776434 445799999999763211100 0 000000 00 12244
Q ss_pred ceEEecCCCCcEEEEecCCCCCCC---CCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 434 VDFHWNASDPWTVVSVSDDCDSTG---GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 434 ~~~~~~p~~~~l~~s~s~d~~sgg---~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
..+++++++..++++..++- -++ ..+.|.+.|+. +.+.++++..- .++++|+|+|
T Consensus 283 q~~a~~~~~~~lyV~~~~~~-~~~hk~~~~~V~viD~~------t~kv~~~i~vg-~~~~~lavs~ 340 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRD-EWRHKTASRFVVVLDAK------TGERLAKFEMG-HEIDSINVSQ 340 (386)
T ss_dssp SCEEEETTTTEEEEEEEECC-TTCTTSCEEEEEEEETT------TCCEEEEEEEE-EEECEEEECS
T ss_pred ceeeECCCCCeEEEEecccc-ccccCCCCCEEEEEECC------CCeEEEEEECC-CCcceEEECC
Confidence 56788998888887643210 001 12579999998 56666665532 3567777765
No 224
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.89 E-value=1.2e-06 Score=79.54 Aligned_cols=196 Identities=8% Similarity=-0.043 Sum_probs=123.8
Q ss_pred ceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 199 EFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 199 v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
..+++|++++. ++++-...+.|..+++...... ..+...
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~----------------------------------------~~~~~~ 77 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT----------------------------------------TIIRQD 77 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE----------------------------------------EEECTT
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE----------------------------------------EEEECC
Confidence 57899999755 4455556789999998643210 111112
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC--CCcEEEEeCCC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRN 355 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~--dg~i~iwd~~~ 355 (496)
......+++++++..++++-...+.|.++++.... ..............++++|..+.++++... .+.|..+++..
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 24578899999765777777788999999986543 122222223567899999933444444433 46888888764
Q ss_pred CCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997 356 LTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 434 (496)
Q Consensus 356 ~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 434 (496)
.....+. ..-.....++++|++..|+++-...+.|.++|+..... ..+. .+ .....
T Consensus 156 -------~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-------------~~~~--~~-~~~P~ 212 (267)
T 1npe_A 156 -------TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-------------RKVL--EG-LQYPF 212 (267)
T ss_dssp -------CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-------------EEEE--EC-CCSEE
T ss_pred -------CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-------------EEEe--cC-CCCce
Confidence 2223222 22346789999998887887887788999999875210 1111 11 12234
Q ss_pred eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.++.. +..++++.... +.|.+++..
T Consensus 213 gi~~d--~~~lyva~~~~-------~~v~~~d~~ 237 (267)
T 1npe_A 213 AVTSY--GKNLYYTDWKT-------NSVIAMDLA 237 (267)
T ss_dssp EEEEE--TTEEEEEETTT-------TEEEEEETT
T ss_pred EEEEe--CCEEEEEECCC-------CeEEEEeCC
Confidence 56554 56677654433 789999987
No 225
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.83 E-value=1.5e-06 Score=77.82 Aligned_cols=208 Identities=9% Similarity=0.023 Sum_probs=136.2
Q ss_pred cceEEEecCCCc--eeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC
Q 010997 131 VKKHKTIIHPGE--VNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206 (496)
Q Consensus 131 ~~~~~~~~h~~~--V~~l~~~p~~~~~lat~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p 206 (496)
.+++..+.|... ...++|+| ++.++++.+. ++.|.++|+.++ +....+.-....-..++++..
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg------------~v~~~i~l~~~~fgeGi~~~g 75 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTG------------KVENIHKMDDSYFGEGLTLLN 75 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTC------------CEEEEEECCTTCCEEEEEEET
T ss_pred ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCC------------CEEEEEecCCCcceEEEEEeC
Confidence 456777888865 57999998 5666666553 579999999988 333333211111122455542
Q ss_pred CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
+...++.-.++.+.++|..+.+.. ..+..... ....+
T Consensus 76 -~~lyv~t~~~~~v~viD~~t~~v~----------------------------------------~~i~~g~~--~g~gl 112 (266)
T 2iwa_A 76 -EKLYQVVWLKNIGFIYDRRTLSNI----------------------------------------KNFTHQMK--DGWGL 112 (266)
T ss_dssp -TEEEEEETTCSEEEEEETTTTEEE----------------------------------------EEEECCSS--SCCEE
T ss_pred -CEEEEEEecCCEEEEEECCCCcEE----------------------------------------EEEECCCC--CeEEE
Confidence 234445557899999998765332 22211101 12335
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccceeeecc--C---CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--H---DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 361 (496)
++++..+++ +..++.|.++|..+.+ ....... . -..++.+.|. ++.+++....++.|.+.|..+
T Consensus 113 t~Dg~~l~v-s~gs~~l~viD~~t~~--v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t------ 181 (266)
T 2iwa_A 113 ATDGKILYG-SDGTSILYEIDPHTFK--LIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD------ 181 (266)
T ss_dssp EECSSSEEE-ECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT------
T ss_pred EECCCEEEE-ECCCCeEEEEECCCCc--EEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC------
Confidence 567745554 4568899999998876 3333221 1 1246788887 466667776788999999998
Q ss_pred CCCceEeccC-------------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 362 GSPINKFEGH-------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 362 ~~~~~~~~~h-------------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
++.+..+... ......|+|+|++..+|+++...+.|.+.++...
T Consensus 182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 6777776531 1356899999999999999998999999998763
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.82 E-value=1.7e-07 Score=88.72 Aligned_cols=213 Identities=10% Similarity=0.047 Sum_probs=124.0
Q ss_pred cceeeeecCCCCceEEec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee
Q 010997 198 AEFALAMCPTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 275 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (496)
....++++++|+.+++.. .++.++||.+.++... .. + ... ....
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~-p------------------------------~~~--~~~~ 63 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PF-P------------------------------PQS--GNAI 63 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ES-C------------------------------CCC--SSCC
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cC-C------------------------------Ccc--cCcc
Confidence 468999999999888864 2343666665432210 00 0 000 0112
Q ss_pred cCCCceeEEEEccCCCceEEEEcC-----CCeEEEEEccCCCccceeeec------cCCCCeEEEEecCCCCcEEEEEc-
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGS- 343 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~i~~sp~~~~~l~sgs- 343 (496)
.+...+.++++.+++ .++++-.. ++.|.+||+.+++ ....+. .+...++.++++|.++..+++..
T Consensus 64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 355689999999998 56665433 5799999998776 233222 12345789999983455556655
Q ss_pred --CCCcEEEEeCCCCCCCCCCCCceEeccC-----------------------------CCCEEEEEEcCCCCCEEEEEe
Q 010997 344 --ADNSVRMFDRRNLTSNGVGSPINKFEGH-----------------------------SAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 344 --~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----------------------------~~~i~~l~~sp~~~~llas~~ 392 (496)
.++.|.+||+.+ +.....+.+| ...+..|+|+|+++.|+++..
T Consensus 141 ~~~~~~i~v~d~~~------g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 141 PDDKAALIRVDLQT------GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp SGGGCEEEEEETTT------CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred cCCCCeEEEEECCC------CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence 678999999876 3322222221 124688999999987664444
Q ss_pred CCCcEEEEECCCCCcccCCCCCCCCCCCee--EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGL--FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
....|..++....... .. ..... .+...++......+++++++ .++++...+ +.|.+|+..
T Consensus 215 ~~~~l~~~~~~~~~~~-~~------~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~-------~~V~~~d~~ 277 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNL-QL------TDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAH-------SAIGVITSA 277 (343)
T ss_dssp SCSEEEEEEHHHHTCT-TC------CHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGG-------TEEEEEETT
T ss_pred CCCeEEEEEHHHhcCC-CC------ChhhhhcceEecccCCCCceEEECCCC-CEEEEccCC-------CeEEEEECC
Confidence 3445544443211000 00 00000 00112334456789999986 466655544 899999993
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.78 E-value=2.2e-06 Score=81.70 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=108.3
Q ss_pred ceeEEEEccCCCceEEEEcCC------CeEEEEEccCCCccceeeeccC--C-CCeEEEEecCCCCcEEEEEc-------
Q 010997 280 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH--D-ADLHCVDWNPLDDNLILTGS------- 343 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~i~~sp~~~~~l~sgs------- 343 (496)
.-..+.+.|++ +++++..+ |.|.++|..+.+ .+...... . .--..+.|+| +++.+++..
T Consensus 139 ~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~ 213 (462)
T 2ece_A 139 RLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTI 213 (462)
T ss_dssp EEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHH
T ss_pred cccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe--EEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccc
Confidence 34566788988 56666555 789999999887 44444322 1 2234588899 888888874
Q ss_pred ------------CCCcEEEEeCCCCCCCCCCCCceEeccC--CCCEEEEEE--cCCCCCEEEEEe-----CCCcEEEEEC
Q 010997 344 ------------ADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQW--SPDKSSVFGSSA-----EDGLLNIWDY 402 (496)
Q Consensus 344 ------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~i~~l~~--sp~~~~llas~~-----~dg~i~iwd~ 402 (496)
...+|.+||+.+ ++.+.++..- ......+.| +|++++.++++- .++.|.+|..
T Consensus 214 ~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 214 EDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp TTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred ccccchhhhhhccCCEEEEEECCC------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 368999999997 5666666542 123445555 999998887777 7888988776
Q ss_pred CCCCcccCCCCCCCCCCCeeEE-Ee-------cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 403 EKVGKKVEQGPRTTNYPAGLFF-QH-------AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~-~~-------~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
.. +........ + .+..... .+ .+-.....++.+++++++|.+|.-.. +.|.+||+.+
T Consensus 288 d~-g~~~~~~vI-d-i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-------d~VavfdV~d 352 (462)
T 2ece_A 288 ED-GKWNAEKVI-E-IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-------GEVRQYDISN 352 (462)
T ss_dssp ET-TEEEEEEEE-E-ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-------TEEEEEECSS
T ss_pred cC-CceeEEEEE-e-CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-------CEEEEEEecC
Confidence 54 211000000 0 0000000 00 00023578999999999999987655 8999999963
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=1.9e-05 Score=71.52 Aligned_cols=200 Identities=6% Similarity=0.000 Sum_probs=125.6
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSV 220 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i 220 (496)
.+..+++.+.++.++++-..++.|.++++.... ....+..... ...++++++++. .+++-...+.|
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~------------~~~~~~~~~~-~p~~ia~d~~~~~lyv~d~~~~~I 103 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE------------PTTIIRQDLG-SPEGIALDHLGRTIFWTDSQLDRI 103 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC------------CEEEECTTCC-CEEEEEEETTTTEEEEEETTTTEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC------------cEEEEECCCC-CccEEEEEecCCeEEEEECCCCEE
Confidence 578999999667777777778899999987651 1122222112 357899998755 44555567889
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC-
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD- 299 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~- 299 (496)
.+++++..... ............++++|++..++++...
T Consensus 104 ~~~~~~g~~~~----------------------------------------~~~~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 104 EVAKMDGTQRR----------------------------------------VLFDTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp EEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred EEEEcCCCCEE----------------------------------------EEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence 99987632110 0111112356899999976465665544
Q ss_pred -CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997 300 -DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (496)
Q Consensus 300 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l 378 (496)
.+.|..+++.... ............+.++++|..+.++++-...+.|..+|+.. ......+.. ......+
T Consensus 144 ~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g------~~~~~~~~~-~~~P~gi 214 (267)
T 1npe_A 144 DNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ------PGRRKVLEG-LQYPFAV 214 (267)
T ss_dssp SSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE------EEEEEEEEC-CCSEEEE
T ss_pred CCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC------CceEEEecC-CCCceEE
Confidence 4788888876433 11112123356789999993345556666778999999875 222222222 2344667
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+.. +.+++++....+.|.++|....
T Consensus 215 ~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 215 TSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred EEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 654 4567777767789999998764
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.73 E-value=2.2e-07 Score=89.51 Aligned_cols=260 Identities=9% Similarity=0.020 Sum_probs=145.3
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec----------CCCcEEEEecCCccccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSS 232 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~----------~Dg~i~iwd~~~~~~~~ 232 (496)
+.|.++|..+. +.+..+..-.. + .+.++|++++|+.+. .++.|.++|..+.+...
T Consensus 99 ~~VsVID~~t~------------~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~ 163 (426)
T 3c75_H 99 TQQFVIDGSTG------------RILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA 163 (426)
T ss_dssp EEEEEEETTTT------------EEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred CeEEEEECCCC------------EEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence 69999999988 44455543333 3 899999999887775 46799999998654321
Q ss_pred cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc-C-CCeEEEEEccC
Q 010997 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-D-DSCLILWDARV 310 (496)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~-dg~i~iwd~~~ 310 (496)
...... . ..+ ........+.|+|++. +++.+. . ++.|.+.|+.+
T Consensus 164 ~I~v~g-------------------------------~-~r~-~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 164 DIELPD-------------------------------A-PRF-LVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp EEEETT-------------------------------C-CCC-CBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTT
T ss_pred EEECCC-------------------------------c-ccc-ccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCC
Confidence 110000 0 000 0012345789999994 555544 3 68999999998
Q ss_pred CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce----EeccCCCCE-EEEEEcCCCC
Q 010997 311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN----KFEGHSAAV-LCVQWSPDKS 385 (496)
Q Consensus 311 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~----~~~~h~~~i-~~l~~sp~~~ 385 (496)
.+ ....+..- . +....|.....+++.+.||.+.+.+... ++... .+.....++ ..+.|.+++.
T Consensus 210 ~k--vv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~------~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 210 KT--FDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFAD------GETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp TE--EEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCT------TCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred Ce--EEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCC------CcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 87 44443221 1 1233342345666777888888888843 22221 121111221 2356789888
Q ss_pred CEEEEEeCCCcEEEEECCCCCcccCCCCCC-CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC---CCCe
Q 010997 386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG---GGGT 461 (496)
Q Consensus 386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg---~Dg~ 461 (496)
.++++ +..+.|.+.|+............. .......-+ .......++++|++..++++....- .++ .++.
T Consensus 278 ~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~----~p~g~~~va~s~dg~rlyVa~~~~~-~gthk~~s~~ 351 (426)
T 3c75_H 278 RLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDW----RPGGWQQTAYHRQSDRIYLLVDQRD-EWKHKAASRF 351 (426)
T ss_dssp EEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE----EECSSSCEEEEGGGTEEEEEEEECC-TTCTTSCEEE
T ss_pred EEEEE-eCCCcEEEEeccCCceEEeeeeeecccccccccc----ccCCceeeEEcCCCCEEEEEecccc-cccccCCCCE
Confidence 76544 567899999986532111000000 000000000 0112334789999888887754210 011 2368
Q ss_pred EEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 462 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 462 i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
|.+.|+. +.+.++++.... ....++|+|
T Consensus 352 VsVID~~------T~kvv~~I~vg~-~P~gia~sp 379 (426)
T 3c75_H 352 VVVLNAE------TGERINKIELGH-EIDSINVSQ 379 (426)
T ss_dssp EEEEETT------TCCEEEEEEEEE-EECEEEECC
T ss_pred EEEEECC------CCeEEEEEECCC-CcCeEEEcc
Confidence 9999998 566666665332 356666665
No 230
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.68 E-value=2.7e-05 Score=72.67 Aligned_cols=251 Identities=8% Similarity=-0.063 Sum_probs=137.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCc--------eEEecCCCCcceeeeecC-CCCce
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPD--------LILTGHQDNAEFALAMCP-TEPYV 211 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~l~~h~~~~v~~l~~~p-~~~~l 211 (496)
.....+++.+ +++++.++..++.|..||..+.......... ..... ........ ...++++.+ +++ |
T Consensus 19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~p~gi~~~~~~g~-l 94 (322)
T 2fp8_A 19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYAS-PYWNKAFCENSTDAEKRPLCG-RTYDISYNLQNNQ-L 94 (322)
T ss_dssp SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESC-TTCCHHHHTTCCCGGGHHHHC-CEEEEEEETTTTE-E
T ss_pred CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEeccc-ccccccccccccchhccccCC-CCceEEEcCCCCc-E
Confidence 3466788888 6787778888999999987754111000000 00000 00000011 357899997 555 4
Q ss_pred EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEcc-C
Q 010997 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP-S 289 (496)
Q Consensus 212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~-~ 289 (496)
+.+...+.|..+|..++...... .... .......++++.+ +
T Consensus 95 ~v~d~~~~i~~~d~~~g~~~~~~-------------------------------------~~~~~~~~~~p~~i~~d~~~ 137 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHATQLA-------------------------------------TSVDGVPFKWLYAVTVDQRT 137 (322)
T ss_dssp EEEETTTEEEEECTTCEECEEEE-------------------------------------SEETTEECSCEEEEEECTTT
T ss_pred EEEECCCCEEEEeCCCCEEEEec-------------------------------------ccCCCCcccccceEEEecCC
Confidence 44444455888886643211000 0000 0112467899999 8
Q ss_pred CCceEEEEcC-----------------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEE
Q 010997 290 SAQEFCSVGD-----------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMF 351 (496)
Q Consensus 290 ~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iw 351 (496)
+ .++++-.. ++.|..||..++. .. .........+.|+|+| ++..| ++-+..+.|..|
T Consensus 138 G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~-~~~~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~ 212 (322)
T 2fp8_A 138 G-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--TT-LLLKELHVPGGAEVSA-DSSFVLVAEFLSHQIVKY 212 (322)
T ss_dssp C-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--EE-EEEEEESCCCEEEECT-TSSEEEEEEGGGTEEEEE
T ss_pred C-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE--EE-EeccCCccCcceEECC-CCCEEEEEeCCCCeEEEE
Confidence 7 56655432 3678888876554 11 1112223457899999 77754 454667899999
Q ss_pred eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC----------CCcEEEEECCCCCcccCCCCCCCCCCCe
Q 010997 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKVEQGPRTTNYPAG 421 (496)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 421 (496)
|+.... ......+....+ ...+++.++|. |+++... .+.|..+|... .
T Consensus 213 ~~~~~~----~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G----------------~ 270 (322)
T 2fp8_A 213 WLEGPK----KGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG----------------N 270 (322)
T ss_dssp ESSSTT----TTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS----------------C
T ss_pred ECCCCc----CCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC----------------C
Confidence 987521 011122221223 78899999997 5555543 35677777542 1
Q ss_pred eEEEecCC----CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 422 LFFQHAGH----RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 422 ~~~~~~~h----~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.+..+... ...++.+++. +..|+++... .+.|.++++.
T Consensus 271 ~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~-------~~~i~~~~~~ 312 (322)
T 2fp8_A 271 ILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLF-------HGSVGILVYD 312 (322)
T ss_dssp EEEEEECCTTTTTSCCCEEEEE--TTEEEEECSS-------CSEEEEEEC-
T ss_pred EEEEEECCCCCccccceEEEEe--CCEEEEeecC-------CCceEEEecc
Confidence 22222211 2346667663 4456664433 4889999987
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.67 E-value=5.2e-06 Score=74.26 Aligned_cols=198 Identities=12% Similarity=0.053 Sum_probs=125.6
Q ss_pred ceeeeecCCCCceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997 199 EFALAMCPTEPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (496)
..+|.|++++.++++.+. +++|.+.|+.+++...... +..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--------------------------------------l~~ 64 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--------------------------------------MDD 64 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--------------------------------------CCT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--------------------------------------cCC
Confidence 468999998765555543 6899999998765422110 111
Q ss_pred CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
+ .....+++. +..++++.-.++.+.++|..+.+ .+..+......-.. +++ ++..++++..++.|.++|..+
T Consensus 65 ~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t- 135 (266)
T 2iwa_A 65 S-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMKDGWG--LAT-DGKILYGSDGTSILYEIDPHT- 135 (266)
T ss_dssp T-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEECCSSSCCE--EEE-CSSSEEEECSSSEEEEECTTT-
T ss_pred C-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEECCCCCeEE--EEE-CCCEEEEECCCCeEEEEECCC-
Confidence 1 112345554 43567777789999999998876 34444222122223 444 455455555788999999988
Q ss_pred CCCCCCCCceEeccCC-----CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC---
Q 010997 357 TSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--- 428 (496)
Q Consensus 357 ~~~~~~~~~~~~~~h~-----~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 428 (496)
.+.+..+..-. ..++.+.|. ++ .+++....++.|.+-|..+.... ..+ ...+
T Consensus 136 -----~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~------------~~I-~~~g~~~ 195 (266)
T 2iwa_A 136 -----FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLL------------GWI-LLPNLRK 195 (266)
T ss_dssp -----CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEE------------EEE-ECHHHHH
T ss_pred -----CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEE------------EEE-ECCCccc
Confidence 55666654221 246788888 66 47877777889999999885211 111 1111
Q ss_pred ------C--CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 429 ------H--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 429 ------h--~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
+ ....+.++|+|++..+++++.. .+.|.+-++...
T Consensus 196 ~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~-------~~~v~~i~l~~~ 238 (266)
T 2iwa_A 196 KLIDEGFRDIDVLNGIAWDQENKRIFVTGKL-------WPKLFEIKLHLV 238 (266)
T ss_dssp HHHHTTCTTCCCEEEEEEETTTTEEEEEETT-------CSEEEEEEEEEC
T ss_pred ccccccccccCceEEEEEcCCCCEEEEECCC-------CCeEEEEEEecc
Confidence 0 1355899999999988886544 489999998754
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.66 E-value=1.9e-09 Score=103.12 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=70.4
Q ss_pred CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
++..+++++.||.|..||..+++.... +.. +.+.+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~----------------------------------------~~~--~~~~s~p~ 45 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT----------------------------------------LKE--DPVLQVPT 45 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE----------------------------------------EEC--CCSCCCC-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE----------------------------------------ecC--CCceecce
Confidence 467899999999999999987754322 111 22333333
Q ss_pred ccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC-CeE-EEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~-~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 364 (496)
..++ .++++++.||.|+.||..+++. ......+.. .+. +..+. .+..+++|+.|+.|+.||..+ ++.
T Consensus 46 ~~~g-~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~t------G~~ 114 (369)
T 2hz6_A 46 HVEE-PAFLPDPNDGSLYTLGSKNNEG--LTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLT------GEK 114 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CC--SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------
T ss_pred EcCC-CEEEEeCCCCEEEEEECCCCce--eeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCC------CcE
Confidence 4455 5778888999999999988772 222211110 010 00111 345677888899999999998 777
Q ss_pred ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+..+..+. ...++|++..+ ++++.|+.|+.||..++
T Consensus 115 ~w~~~~~~----~~~~~p~~~~v-~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 115 QQTLSSAF----ADSLSPSTSLL-YLGRTEYTITMYDTKTR 150 (369)
T ss_dssp ----------------------E-EEEEEEEEEECCCSSSS
T ss_pred EEEecCCC----cccccccCCEE-EEEecCCEEEEEECCCC
Confidence 77766543 24566777754 57788999999999874
No 233
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.63 E-value=5e-06 Score=73.49 Aligned_cols=192 Identities=11% Similarity=0.134 Sum_probs=122.5
Q ss_pred cceEEEecCCCce--eEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC
Q 010997 131 VKKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206 (496)
Q Consensus 131 ~~~~~~~~h~~~V--~~l~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p 206 (496)
.++++.+.|...- ..+.|+ ++.++.+.+.+| .|+++|+.++ +....+.-.. ..++....+
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tg------------kv~~~~~l~~--~~FgeGit~ 94 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESG------------KTLQQIELGK--RYFGEGISD 94 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTC------------CEEEEEECCT--TCCEEEEEE
T ss_pred eEEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCC------------cEEEEEecCC--ccceeEEEE
Confidence 3567777887655 778887 457777777766 8999999998 3333443322 234433333
Q ss_pred CCCceE-EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997 207 TEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (496)
Q Consensus 207 ~~~~l~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (496)
+++.|. ..-.++.+.++|..+.+.. ..+.... ....
T Consensus 95 ~g~~ly~ltw~~~~v~v~D~~t~~~~----------------------------------------~ti~~~~---eG~g 131 (262)
T 3nol_A 95 WKDKIVGLTWKNGLGFVWNIRNLRQV----------------------------------------RSFNYDG---EGWG 131 (262)
T ss_dssp ETTEEEEEESSSSEEEEEETTTCCEE----------------------------------------EEEECSS---CCCC
T ss_pred eCCEEEEEEeeCCEEEEEECccCcEE----------------------------------------EEEECCC---CceE
Confidence 455444 4446889999999764332 2222211 2223
Q ss_pred EccCCCceEEEEcCCCeEEEEEccCCCccceeeecc--CC---CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
+++++. .|+.+..++.|.++|..+.+ ....... .. ..++.+.|. ++.+++..-.+..|.+.|.++
T Consensus 132 lt~dg~-~L~~SdGs~~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t----- 201 (262)
T 3nol_A 132 LTHNDQ-YLIMSDGTPVLRFLDPESLT--PVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET----- 201 (262)
T ss_dssp EEECSS-CEEECCSSSEEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT-----
T ss_pred EecCCC-EEEEECCCCeEEEEcCCCCe--EEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC-----
Confidence 345663 44444457889999998876 3333222 11 345667776 577777776788999999998
Q ss_pred CCCCceEeccC------------CCCEEEEEEcCCCCCEEEEEe
Q 010997 361 VGSPINKFEGH------------SAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 361 ~~~~~~~~~~h------------~~~i~~l~~sp~~~~llas~~ 392 (496)
++.+..+... ....+.|+|+|++..||++|-
T Consensus 202 -G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 202 -GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6666666431 235689999999998887774
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.62 E-value=2.6e-06 Score=84.16 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=92.0
Q ss_pred CeEEEEEccC--CCccceeeeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCC------CCCCCCceEeccC
Q 010997 301 SCLILWDARV--GTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTS------NGVGSPINKFEGH 371 (496)
Q Consensus 301 g~i~iwd~~~--~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~------~~~~~~~~~~~~h 371 (496)
+.|.+.|.++ +. ...... .-.....++.++| ++.+++ ++..+.+|.++|+.+... ......+..+. -
T Consensus 254 ~~V~VID~~~~~~~-~~~~~I-pvg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v 329 (595)
T 1fwx_A 254 NGVKVVDGRKEASS-LFTRYI-PIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L 329 (595)
T ss_dssp TTEEEEECSGGGCC-SSEEEE-EEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred CcEEEEeCcccCCc-eeEEEE-ecCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence 3488888887 33 112222 2234567899999 777655 455688999999996210 00001122232 2
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC-----CCCcceEEecCCCCcEE
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-----RDKVVDFHWNASDPWTV 446 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~~~~~p~~~~l~ 446 (496)
......++|+|+| +++++.-.|+.|.+||+.........+ ...+.+..+.-| ...-..+..+|+|.+|+
T Consensus 330 G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~-----~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~ 403 (595)
T 1fwx_A 330 GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE-----KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV 403 (595)
T ss_dssp CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC-----SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc-----ccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence 3467899999999 788888889999999987621111000 011334444333 32334567799999988
Q ss_pred EEecCCCCCCCCCCeE----------EEeecC
Q 010997 447 VSVSDDCDSTGGGGTL----------QIWRMS 468 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i----------~iw~~~ 468 (496)
++.. ++.|+.+ +++|++
T Consensus 404 ~~Nk-----~skdr~~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 404 CLSK-----FSKDRFLNVGPLKPENDQLIDIS 430 (595)
T ss_dssp EEES-----CCTTSSCCCCSSCCEEEEEEECS
T ss_pred EcCC-----CCccccccCCCCCCCcceEEEcC
Confidence 7753 3334432 888886
No 235
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.61 E-value=4.1e-05 Score=72.22 Aligned_cols=198 Identities=7% Similarity=-0.018 Sum_probs=125.9
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc-eEEecCCCc
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKDKS 219 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~-l~sg~~Dg~ 219 (496)
+...|.+..+ .+.++++ ....|+..++... .....+.+... ..+++|++.+.. +++-...+.
T Consensus 34 d~~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~------------~~~~~~~~~~~--~~~l~~d~~~~~ly~~D~~~~~ 96 (349)
T 3v64_C 34 DRRSCKALGP-EPVLLFA--NRIDIRQVLPHRS------------EYTLLLNNLEN--AIALDFHHRRELVFWSDVTLDR 96 (349)
T ss_dssp TSSCEEESSS-CCEEEEE--CBSCEEEECTTSC------------CEEEEECSCSC--EEEEEEETTTTEEEEEETTTTE
T ss_pred CCCccccccc-CceeEee--cccceEEEeCCCC------------eeEEeecCCCc--eEEEEEeccccEEEEEeccCCc
Confidence 3455666555 5544444 2346887777654 22223333332 579999976554 445556788
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
|..++++..... ..+.........+++.+.+..++++-..
T Consensus 97 I~r~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~ly~~d~~ 136 (349)
T 3v64_C 97 ILRANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSG 136 (349)
T ss_dssp EEEEETTSCSCE----------------------------------------EEECSSCSCCCEEEEETTTTEEEEEETT
T ss_pred eEEEecCCCCce----------------------------------------EEEeCCCCCccEEEEecCCCeEEEEcCC
Confidence 888887643210 1111122345788888766577788788
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEec-cCCCCEEE
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLC 377 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~ 377 (496)
.+.|.+.++.... ........-...+.|+++|..+.++.+-... +.|..+++.. .....+. ..-.....
T Consensus 137 ~~~I~~~~~dG~~--~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~PnG 207 (349)
T 3v64_C 137 TSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPNG 207 (349)
T ss_dssp TTEEEEEETTSCS--CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEESCCSSCSCEEE
T ss_pred CCeEEEEcCCCCc--eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCcce
Confidence 8899999987544 2222323445679999999555666665555 7898888774 3333332 22345789
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 378 VQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 378 l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
|+|+|++..|+++-...+.|..+|+..
T Consensus 208 la~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 999998887887777788999999875
No 236
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.59 E-value=2.8e-05 Score=74.52 Aligned_cols=196 Identities=7% Similarity=-0.021 Sum_probs=123.9
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVV 221 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~ 221 (496)
-.|.+..+ .+.++++ ....|+..++... .....+.+.. ...+++|.+.+. ++++-...+.|.
T Consensus 79 ~~C~~~~~-~~~l~~~--~~~~I~~i~~~~~------------~~~~~~~~~~--~~~gl~~d~~~~~ly~~D~~~~~I~ 141 (386)
T 3v65_B 79 RSCKALGP-EPVLLFA--NRIDIRQVLPHRS------------EYTLLLNNLE--NAIALDFHHRRELVFWSDVTLDRIL 141 (386)
T ss_dssp SCEEECSS-CCEEEEE--CBSCEEEECTTSC------------CCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CeECCccc-cceeEee--cCccceeeccCCC------------cEEEEecCCC--ccEEEEEecCCCeEEEEeCCCCcEE
Confidence 44555444 4444433 3357888888765 2223333333 357999997655 445555678898
Q ss_pred EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
.++++..... ..+.........+++.+.+..++++-...+
T Consensus 142 r~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~ 181 (386)
T 3v65_B 142 RANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTS 181 (386)
T ss_dssp EEETTSCCEE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEETTTT
T ss_pred EEecCCCCcE----------------------------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCC
Confidence 8888643210 111112234567888876657778877888
Q ss_pred eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEE
Q 010997 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQ 379 (496)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~ 379 (496)
.|.+.++.... ............+.|+++|..+.++++-... +.|..+++.. .....+ ...-.....|+
T Consensus 182 ~I~~~~~dg~~--~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 182 RIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp EEEECBTTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSCEEEEE
T ss_pred eEEEEeCCCCc--eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCeeeEE
Confidence 99998886544 2222333446789999998455555665555 7888888774 333333 22334578999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 380 WSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 380 ~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
|+|++..|+++-+..+.|..+|+..
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 253 IDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCC
Confidence 9998887887777788999999865
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=2.2e-06 Score=88.61 Aligned_cols=187 Identities=11% Similarity=0.052 Sum_probs=95.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-CCCcceeeeecC--CCCceEEecC------CCcEEEE
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCP--TEPYVLSGGK------DKSVVLW 223 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-~~~~v~~l~~~p--~~~~l~sg~~------Dg~i~iw 223 (496)
+..|+.++.|+.|..+|..++ +.+..+..+ .......+.-.| .+..++.++. +|.|..+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG------------~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~ 195 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATG------------KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAY 195 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTC------------CEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC------------CEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEE
Confidence 346777888999999999988 333333332 100001111111 2344555543 7999999
Q ss_pred ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--
Q 010997 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-- 301 (496)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-- 301 (496)
|..+++..................... ......|.. ... .....+.......+++.|++ .+++.+..++
T Consensus 196 D~~tG~~~W~~~~~~~~~~~~~~~~~~------~~g~~~w~~-~g~-~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~ 266 (677)
T 1kb0_A 196 DAETGERKWRWFSVPGDPSKPFEDESM------KRAARTWDP-SGK-WWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSP 266 (677)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHH------HHHHTTSCG-GGC-HHHHCEECCCCSCEEEETTT-TEEEEECCCEES
T ss_pred ECCCCcEEEEeccCCCCcccccccccc------ccccccccc-cCc-eeEeCCCcccccceeEcCCC-CEEEEECCCCcc
Confidence 999887654433211000000000000 000000000 000 00000112223467788877 5666666553
Q ss_pred -----------------eEEEEEccCCCccceeeec--cCC-------CCeEEEEecCCCC---cEEEEEcCCCcEEEEe
Q 010997 302 -----------------CLILWDARVGTSPVIKVEK--AHD-------ADLHCVDWNPLDD---NLILTGSADNSVRMFD 352 (496)
Q Consensus 302 -----------------~i~iwd~~~~~~~~~~~~~--~~~-------~~v~~i~~sp~~~---~~l~sgs~dg~i~iwd 352 (496)
.|..+|.++++ ....+. .|. .....+.... ++ ..++.++.+|.|+++|
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD 343 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLD 343 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEE
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEE
Confidence 59999999988 333322 221 1222333333 45 6899999999999999
Q ss_pred CCCCCCCCCCCCceEec
Q 010997 353 RRNLTSNGVGSPINKFE 369 (496)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ 369 (496)
..+ ++.+..+.
T Consensus 344 ~~t------G~~l~~~~ 354 (677)
T 1kb0_A 344 RTN------GKFISAKN 354 (677)
T ss_dssp TTT------CCEEEEEE
T ss_pred CCC------CCEecccc
Confidence 998 66655443
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.58 E-value=5.4e-06 Score=85.82 Aligned_cols=176 Identities=10% Similarity=0.087 Sum_probs=90.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-CCCcceeeeecC---CCCceEEec------CCCcEEE
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCP---TEPYVLSGG------KDKSVVL 222 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-~~~~v~~l~~~p---~~~~l~sg~------~Dg~i~i 222 (496)
+..|+.++.|+.|+.+|..++. .+..+... .......+..+| ++. ++.++ .+|.|..
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~------------~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a 187 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQ------------RAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTA 187 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCC------------EEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCC------------EeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEE
Confidence 3467788899999999999883 22222221 000111222223 444 44443 3789999
Q ss_pred EecCCccccccCCcccc-ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997 223 WSIQDHITSSATDPATA-KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (496)
||..+++.......... ............. ...+.. ..-....++......+++.|+. .+++.+..++
T Consensus 188 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~-------~~~~~g---~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g 256 (689)
T 1yiq_A 188 YDAETGKEAWRFYTVPGDPKLPPEGKGMEIA-------AKTWFG---DAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNG 256 (689)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCCSHHHHHH-------HTTCCS---STHHHHCEECCCCSCEEEETTT-TEEEEECCCE
T ss_pred EECCCCcEEEEecccCCCccccccccccccc-------ccccCC---ceeeecCCCCccccceeEcCCC-CEEEEeCCCC
Confidence 99999876554321100 0000000000000 000000 0000000111222357788877 5777777765
Q ss_pred -------------------eEEEEEccCCCccceeeecc--CC-------CCeEEEEecCCCCc---EEEEEcCCCcEEE
Q 010997 302 -------------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRM 350 (496)
Q Consensus 302 -------------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~i~~sp~~~~---~l~sgs~dg~i~i 350 (496)
.|..+|.++++ ....+.. |. ..+....... ++. .++.++.+|.+++
T Consensus 257 ~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~ 333 (689)
T 1yiq_A 257 SLWDPKWRSQAKGDNLFLSSIVAVNADTGE--YVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYV 333 (689)
T ss_dssp ESSCHHHHHTTCSCCTTTTEEEEEETTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEE
T ss_pred CccccCCCCCCCCCceeeeeEEEEEccCCc--eeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEE
Confidence 39999999988 3333322 21 1222222222 343 7889999999999
Q ss_pred EeCCC
Q 010997 351 FDRRN 355 (496)
Q Consensus 351 wd~~~ 355 (496)
+|.++
T Consensus 334 lD~~t 338 (689)
T 1yiq_A 334 IDRAT 338 (689)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99988
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.51 E-value=1.7e-05 Score=74.07 Aligned_cols=216 Identities=7% Similarity=-0.019 Sum_probs=131.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccccc
Q 010997 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA 233 (496)
Q Consensus 154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~ 233 (496)
..|..++.++.|..+|.. + +.......+.. .+.++...+++. |..|+.++.|..+|.. +...
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g------------~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~-- 169 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-G------------TEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEK-- 169 (330)
T ss_dssp TEEEEECTTSEEEEECTT-S------------CEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEE--
T ss_pred CEEEEEecCCEEEEEcCC-C------------CEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEe--
Confidence 356677788899999987 5 22223333332 356666766665 6667778999999976 3221
Q ss_pred CCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc
Q 010997 234 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS 313 (496)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 313 (496)
..+......+.++...+++ . +..++ +.|..+| .++.
T Consensus 170 --------------------------------------~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~- 205 (330)
T 3hxj_A 170 --------------------------------------WRFKTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGT- 205 (330)
T ss_dssp --------------------------------------EEEECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSC-
T ss_pred --------------------------------------EEEecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCc-
Confidence 1122223345566666666 4 44454 7899999 5555
Q ss_pred cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC
Q 010997 314 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 393 (496)
Q Consensus 314 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~ 393 (496)
...........+.++...+ ++. |..++.++.|..+|.. +..+..+......+..+.+.+++. |+ .++.
T Consensus 206 -~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~ 273 (330)
T 3hxj_A 206 -EKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLYAINPD-------GTEKWRFKTGKRIESSPVIGNTDT-IY-FGSY 273 (330)
T ss_dssp -EEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEEEECTT-------SCEEEEEECSSCCCSCCEECTTSC-EE-EECT
T ss_pred -EEEEEccCCcceeceEECC-CCe-EEEEcCCCeEEEECCC-------CCEeEEeeCCCCccccceEcCCCe-EE-EecC
Confidence 3333434456678888887 554 5556667788888743 455555554444445566666665 54 6777
Q ss_pred CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 394 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+|.|..+|. .. ..+.........+.++...+++. +.+ |+.+|.+++....
T Consensus 274 ~ggl~~~d~-~g---------------~~~~~~~~~~~~~~~~~~d~~g~-l~~--------gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 274 DGHLYAINP-DG---------------TEKWNFETGSWIIATPVIDENGT-IYF--------GTRNGKFYALFNL 323 (330)
T ss_dssp TCEEEEECT-TS---------------CEEEEEECSSCCCSCCEECTTCC-EEE--------ECTTSCEEEEEC-
T ss_pred CCCEEEECC-CC---------------cEEEEEEcCCccccceEEcCCCE-EEE--------EcCCCeEEEEecc
Confidence 888999985 32 12223333345677777777654 453 3345899988776
No 240
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.51 E-value=8.9e-05 Score=65.85 Aligned_cols=208 Identities=9% Similarity=0.097 Sum_probs=130.1
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceE--EecCCCCcceeeeecCCCCceEEec
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQDNAEFALAMCPTEPYVLSGG 215 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--l~~h~~~~v~~l~~~p~~~~l~sg~ 215 (496)
+-.+++..++|.|+++.++|+...++.|...|.. + +.... +.+..+ .-+|++.+++.++++.-
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g------------~v~~~i~l~g~~D--~EGIa~~~~g~~~vs~E 88 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G------------DLIRTIPLDFVKD--LETIEYIGDNQFVISDE 88 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C------------CEEEEEECSSCSS--EEEEEECSTTEEEEEET
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C------------CEEEEEecCCCCC--hHHeEEeCCCEEEEEEC
Confidence 4446799999999666777778888999999987 4 22222 234333 46889988888777777
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.++.+.++++............ .. ++. ..........|+|.|.+. .|+
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~-----------------------------~~-~~~-~~~~N~g~EGLA~d~~~~-~L~ 136 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKI-----------------------------KI-PLQ-ESPTNCGFEGLAYSRQDH-TFW 136 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEE-----------------------------EC-CCS-SCCCSSCCEEEEEETTTT-EEE
T ss_pred CCCcEEEEEcCCCCeeeeeeee-----------------------------cc-ccc-cccccCCcceEEEeCCCC-EEE
Confidence 7889999987643210000000 00 000 012345578999999984 444
Q ss_pred EEcCCCeEEEEEccCC-Cccceeee-------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 296 SVGDDSCLILWDARVG-TSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~-~~~~~~~~-------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
++.+.....||.+... ........ ..+...+..++++|..+.+++.......|..+|... ..+..
T Consensus 137 va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-------~~~~~ 209 (255)
T 3qqz_A 137 FFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-------EVIGE 209 (255)
T ss_dssp EEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-------CEEEE
T ss_pred EEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-------CEEEE
Confidence 4554444455554311 00011111 123456789999998888889999999999999774 54444
Q ss_pred eccCC---------CCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997 368 FEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 368 ~~~h~---------~~i~~l~~sp~~~~llas~~~dg~i~iwd 401 (496)
+.-.. ...-.|+|.++|. |+++ ++-+.+++|.
T Consensus 210 ~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 210 MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFT 250 (255)
T ss_dssp EECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEE
T ss_pred EEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEE
Confidence 43221 3568999999997 6655 5666655554
No 241
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.49 E-value=4.1e-05 Score=67.03 Aligned_cols=192 Identities=9% Similarity=0.088 Sum_probs=120.7
Q ss_pred cceEEEecCCCc--eeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC
Q 010997 131 VKKHKTIIHPGE--VNRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206 (496)
Q Consensus 131 ~~~~~~~~h~~~--V~~l~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p 206 (496)
.++++.+.|... ...+.|++ +.++.+.+.+| .|+++|+.++ +....+.-... .++....+
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tg------------kv~~~~~l~~~--~fgeGi~~ 72 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETG------------RILQRAEVPPP--YFGAGIVA 72 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTC------------CEEEEEECCTT--CCEEEEEE
T ss_pred eEEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCC------------CEEEEEeCCCC--cceeEEEE
Confidence 456777788755 44888876 56677777654 8999999998 33333332222 23333333
Q ss_pred CCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997 207 TEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (496)
Q Consensus 207 ~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (496)
.++ ..+..-.++.+.++|.++.... ..+.... .-..+
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~----------------------------------------~ti~~~~-~Gwgl- 110 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPR----------------------------------------ARFRYPG-EGWAL- 110 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEE----------------------------------------EEEECSS-CCCEE-
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEE----------------------------------------EEEeCCC-CceEE-
Confidence 344 4444557899999998765332 2222211 11333
Q ss_pred EccCCCceEEEEcCCCeEEEEEccCCCccceeeecc--CC---CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (496)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~ 360 (496)
++++..+++| ..++.|.++|..+.+ ....... +. ..++.+.|. ++.+++..-.+..|.+.|.++
T Consensus 111 -t~dg~~L~vS-dgs~~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~t----- 179 (243)
T 3mbr_X 111 -TSDDSHLYMS-DGTAVIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPAS----- 179 (243)
T ss_dssp -EECSSCEEEE-CSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTT-----
T ss_pred -eeCCCEEEEE-CCCCeEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCC-----
Confidence 3566444444 558899999998876 3333222 11 345677776 567777666788999999998
Q ss_pred CCCCceEecc-------------CCCCEEEEEEcCCCCCEEEEEe
Q 010997 361 VGSPINKFEG-------------HSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 361 ~~~~~~~~~~-------------h~~~i~~l~~sp~~~~llas~~ 392 (496)
++.+..+.. -..-.+.|+++|++..||+||-
T Consensus 180 -G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 180 -GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 666666541 1235689999999888887774
No 242
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.49 E-value=0.00041 Score=64.33 Aligned_cols=183 Identities=5% Similarity=-0.045 Sum_probs=114.3
Q ss_pred CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCcccccc
Q 010997 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKS 241 (496)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~ 241 (496)
..|+..|+... .....+..-. ...+++|++.+. .+++-...+.|..+++......
T Consensus 10 ~~I~~i~~~~~------------~~~~~~~~~~--~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~---------- 65 (316)
T 1ijq_A 10 HEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------- 65 (316)
T ss_dssp SSEEEEETTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC----------------
T ss_pred CeEEEEECCCc------------ceEehhcCCC--ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----------
Confidence 46888888776 2222333322 357999998755 4555566789999988641000
Q ss_pred CCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc
Q 010997 242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321 (496)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 321 (496)
......+.........+++.+.+.+++++-...+.|.++|+.... .......
T Consensus 66 --------------------------~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~ 117 (316)
T 1ijq_A 66 --------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE 117 (316)
T ss_dssp ----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEEC
T ss_pred --------------------------cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--eEEEEEC
Confidence 000011111223457888887665777777888999999987543 2222223
Q ss_pred CCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 010997 322 HDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (496)
Q Consensus 322 ~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~i 399 (496)
.......++++|..+.++++.... +.|..+++.. .....+ ...-.....|+++|++..|+++-+..+.|..
T Consensus 118 ~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-------~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-------CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 345778999998445555554443 7888888763 333333 2233467899999988878877777889999
Q ss_pred EECCC
Q 010997 400 WDYEK 404 (496)
Q Consensus 400 wd~~~ 404 (496)
+|+..
T Consensus 191 ~d~dg 195 (316)
T 1ijq_A 191 IDVNG 195 (316)
T ss_dssp EETTS
T ss_pred EecCC
Confidence 99875
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=1.6e-05 Score=70.27 Aligned_cols=190 Identities=7% Similarity=0.037 Sum_probs=122.2
Q ss_pred ceEEEecCCCce--eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997 132 KKHKTIIHPGEV--NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (496)
Q Consensus 132 ~~~~~~~h~~~V--~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~ 209 (496)
++++.+.|...- ..+.|. ++.++.+.+.+|.|+++|+.++ +....+ -.. ..++....++++
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tg------------kv~~~~-l~~--~~FgeGit~~g~ 106 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESA------------QPVWME-RLG--NIFAEGLASDGE 106 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCS------------SCSEEE-ECT--TCCEEEEEECSS
T ss_pred EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCC------------cEEeEE-CCC--CcceeEEEEeCC
Confidence 466777786554 577776 4678888889999999999998 333333 111 233422333444
Q ss_pred -ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 210 -YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 210 -~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
..+..-.++.+.++|.++.+.. ..+... ..-..++ +
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~----------------------------------------~ti~~~-~eGwGLt--~ 143 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRE----------------------------------------RTTRYS-GEGWGLC--Y 143 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEE----------------------------------------EEEECS-SCCCCEE--E
T ss_pred EEEEEEccCCEEEEEECCcCcEE----------------------------------------EEEeCC-CceeEEe--c
Confidence 3444557899999999865432 222211 1113333 4
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCccceeeecc--CC---CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 363 (496)
++ ..|+.+..++.|.++|..+.+ ....... +. ..++.+.|. ++.+++..-.+..|.+.|.++ ++
T Consensus 144 Dg-~~L~vSdGs~~l~~iDp~T~~--v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T------G~ 212 (268)
T 3nok_A 144 WN-GKLVRSDGGTMLTFHEPDGFA--LVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT------GT 212 (268)
T ss_dssp ET-TEEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT------CB
T ss_pred CC-CEEEEECCCCEEEEEcCCCCe--EEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC------Cc
Confidence 56 445555568999999998877 3333221 22 245777877 567777776788999999998 67
Q ss_pred CceEeccC-------------CCCEEEEEEcCCCCCEEEEEe
Q 010997 364 PINKFEGH-------------SAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 364 ~~~~~~~h-------------~~~i~~l~~sp~~~~llas~~ 392 (496)
.+..+... ..-.+.|+|+|++..||+||-
T Consensus 213 V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 213 VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 66665421 235789999999888998774
No 244
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.48 E-value=0.00014 Score=67.15 Aligned_cols=242 Identities=9% Similarity=0.018 Sum_probs=136.8
Q ss_pred cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (496)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~ 210 (496)
.+....+.-......+++.+ +++++++-..++.|..||..... ...+.. .. ...++++.+++++
T Consensus 22 ~~~~~~~p~~~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~-------------~~~~~~-~~-~p~gia~~~dG~l 85 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ-------------QIHATV-EG-KVSGLAFTSNGDL 85 (306)
T ss_dssp EEEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE-------------EEEEEC-SS-EEEEEEECTTSCE
T ss_pred ceEeEeCCCCCCcceEEECC-CCCEEEEeCCCCeEEEECCCCce-------------EEEEeC-CC-CceeEEEcCCCcE
Confidence 34455555456788999999 77888887788999999876541 111211 12 4679999999986
Q ss_pred eEEecCC-C-cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 211 VLSGGKD-K-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 211 l~sg~~D-g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
+++.... + .|..+|..++..... ..+ ........++..+
T Consensus 86 ~vad~~~~~~~v~~~d~~~g~~~~~--------------------------------------~~~-~~~~~~~g~~~~~ 126 (306)
T 2p4o_A 86 VATGWNADSIPVVSLVKSDGTVETL--------------------------------------LTL-PDAIFLNGITPLS 126 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEE--------------------------------------EEC-TTCSCEEEEEESS
T ss_pred EEEeccCCcceEEEEcCCCCeEEEE--------------------------------------EeC-CCccccCcccccC
Confidence 5554332 2 465566554322100 000 0111223444444
Q ss_pred CCCceEEEEcCCCeEEEEEccCCCcccee--------eeccCCCCeEEEEecCCCC-cEEEEEcCCCcEEEEeCCCCCCC
Q 010997 289 SSAQEFCSVGDDSCLILWDARVGTSPVIK--------VEKAHDADLHCVDWNPLDD-NLILTGSADNSVRMFDRRNLTSN 359 (496)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~v~~i~~sp~~~-~~l~sgs~dg~i~iwd~~~~~~~ 359 (496)
.+ ..+++-..++.|..+|...+...... .....-...+.| +| ++ .++++-+..+.|..||+.....
T Consensus 127 ~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~~~~~g~- 201 (306)
T 2p4o_A 127 DT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIPVDSTDK- 201 (306)
T ss_dssp SS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEEBCTTSC-
T ss_pred CC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEEeCCCCC-
Confidence 44 45566556888988887653210110 000111244556 67 55 4556666788999999874110
Q ss_pred CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec
Q 010997 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 439 (496)
Q Consensus 360 ~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 439 (496)
......+.. ......++++++|. ++++....+.|.++|... +. ..+..........++++|.
T Consensus 202 --~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G--~~------------~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 202 --PGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR--ST------------TIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp --BCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC--CE------------EEEECGGGTCTTEEEEEEC
T ss_pred --CCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC--CE------------EEEeecccccCCceEEEEe
Confidence 011122211 13456789999996 676766678899998652 11 1111122223457899998
Q ss_pred ---CCCCcEEEEec
Q 010997 440 ---ASDPWTVVSVS 450 (496)
Q Consensus 440 ---p~~~~l~~s~s 450 (496)
|++..|+++.+
T Consensus 264 g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 264 QTEGDCTAIYVVTN 277 (306)
T ss_dssp CSTTTTTEEEEEEC
T ss_pred cccCCCCEEEEECC
Confidence 78788887764
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.47 E-value=2e-05 Score=69.67 Aligned_cols=191 Identities=10% Similarity=0.078 Sum_probs=114.1
Q ss_pred ceeeeecCCCCceEEecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997 199 EFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (496)
..+|.|+ ++.++.+.+.+| +|+++|+.+++.... +.-
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------------------------------------~~l 83 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ----------------------------------------IEL 83 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE----------------------------------------EEC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE----------------------------------------Eec
Confidence 4678888 677777777776 999999987654321 111
Q ss_pred CCCce--eEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997 277 HEDTV--EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (496)
Q Consensus 277 h~~~v--~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~ 354 (496)
. ... ..+.. .+..++++.-.++.+.+||..+.+ .+..+... ..-..++ + ++..|+.+..++.|.++|..
T Consensus 84 ~-~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~-~eG~glt--~-dg~~L~~SdGs~~i~~iDp~ 154 (262)
T 3nol_A 84 G-KRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYD-GEGWGLT--H-NDQYLIMSDGTPVLRFLDPE 154 (262)
T ss_dssp C-TTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC--EEEEEECS-SCCCCEE--E-CSSCEEECCSSSEEEEECTT
T ss_pred C-CccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc--EEEEEECC-CCceEEe--c-CCCEEEEECCCCeEEEEcCC
Confidence 1 112 22333 344566666678999999999887 44444322 2223444 3 45555555557889999999
Q ss_pred CCCCCCCCCCceEeccC--C---CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997 355 NLTSNGVGSPINKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (496)
Q Consensus 355 ~~~~~~~~~~~~~~~~h--~---~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 429 (496)
+ .+.+.++... . ..++.+.|. +|. |+|..-.++.|.+.|..++........... .+... ....-
T Consensus 155 T------~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L-~~~~~--~~~~~ 223 (262)
T 3nol_A 155 S------LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGI-LAEAG--PLPSP 223 (262)
T ss_dssp T------CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTG-GGGSC--SCCSS
T ss_pred C------CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcC-ccccc--cccCc
Confidence 8 5666665432 1 345668887 564 887776788999999988421110000000 00000 00011
Q ss_pred CCCcceEEecCCCCcEEEEec
Q 010997 430 RDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 430 ~~~V~~~~~~p~~~~l~~s~s 450 (496)
....+.+||+|++..+++++-
T Consensus 224 ~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 224 IDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECC
Confidence 235688999999888888653
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.44 E-value=2.3e-06 Score=80.10 Aligned_cols=250 Identities=13% Similarity=0.061 Sum_probs=135.0
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccC
Q 010997 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT 234 (496)
Q Consensus 155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~ 234 (496)
.|..++.++.|..|| .++.. ......+.. .+.++...+++. |..++.+ |..+|. ++......
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~------------~~~~~~~~~-~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSV------------KWFFKSGEI-IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCE------------EESSCGGGE-EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred eEEEEcCCCEEEEEC-CCCcE------------EEEEecCCC-cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence 466677788899999 66521 111111222 346666766665 4445444 888886 44332222
Q ss_pred CccccccCCC--CCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997 235 DPATAKSAGS--SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (496)
Q Consensus 235 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (496)
.......... ....+... ...+.+..++.. ......+......+.++...+++ .+..++.++.|..+|.. ++
T Consensus 94 ~~~~~~~~~~~~~~~~l~v~--t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 94 DTKKAIVSDFTIFEDILYVT--SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp CC-----CCEEEETTEEEEE--CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SC
T ss_pred ECCCCcccCceEECCEEEEE--ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CC
Confidence 1111000000 00001110 112223333333 33334444444556666776666 36677888999999988 55
Q ss_pred ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997 313 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 313 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~ 392 (496)
...........+.++...+ ++.++ .++ +.|..+| .+ +..+..+......+.++...+++. ++ .++
T Consensus 168 --~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t 232 (330)
T 3hxj_A 168 --EKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PD------GTEKWNFYAGYWTVTRPAISEDGT-IY-VTS 232 (330)
T ss_dssp --EEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TT------SCEEEEECCSSCCCSCCEECTTSC-EE-EEE
T ss_pred --EeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CC------CcEEEEEccCCcceeceEECCCCe-EE-EEc
Confidence 3333334455677777776 56544 444 7899999 55 566666665566788888888876 55 566
Q ss_pred CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.++.|..+|... ..+.........+..+...+++ .+.++ +.+|.|..++..
T Consensus 233 ~~~gl~~~~~~g----------------~~~~~~~~~~~~~~~~~~~~~g-~l~v~--------t~~ggl~~~d~~ 283 (330)
T 3hxj_A 233 LDGHLYAINPDG----------------TEKWRFKTGKRIESSPVIGNTD-TIYFG--------SYDGHLYAINPD 283 (330)
T ss_dssp TTTEEEEECTTS----------------CEEEEEECSSCCCSCCEECTTS-CEEEE--------CTTCEEEEECTT
T ss_pred CCCeEEEECCCC----------------CEeEEeeCCCCccccceEcCCC-eEEEe--------cCCCCEEEECCC
Confidence 677888887432 1222233333334455565544 44432 224678888753
No 247
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.44 E-value=0.00028 Score=67.81 Aligned_cols=184 Identities=5% Similarity=-0.041 Sum_probs=116.4
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecCCccccccCCccccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
...|+..++... .....+.+.. .+.+|+|++.+..| ++-...+.|..+++......
T Consensus 91 ~~~I~~i~l~~~------------~~~~~~~~~~--~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--------- 147 (400)
T 3p5b_L 91 RHEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------- 147 (400)
T ss_dssp TTEEEEECTTSC------------SCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred cceeEEEccCCc------------ceeEeccccC--cceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---------
Confidence 357888888765 2222333332 36799999865544 45456788888887642100
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (496)
......+.........+++.+.+.+++++-...+.|.+.++.... ......
T Consensus 148 ---------------------------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~ 198 (400)
T 3p5b_L 148 ---------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFR 198 (400)
T ss_dssp ---------------------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--EEEEEE
T ss_pred ---------------------------CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--eEEEEe
Confidence 000122222334677899988655778888888999999987654 222233
Q ss_pred cCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 321 AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 321 ~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
........|+++|..+.++.+-.. .+.|...++.. .....+ ...-.....|+++|++..|+.+-...+.|.
T Consensus 199 ~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-------~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~ 271 (400)
T 3p5b_L 199 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 271 (400)
T ss_dssp CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-------CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence 344568899999944555555433 47888888874 333333 333356789999998887887777788999
Q ss_pred EEECCC
Q 010997 399 IWDYEK 404 (496)
Q Consensus 399 iwd~~~ 404 (496)
.+|+..
T Consensus 272 ~~d~dG 277 (400)
T 3p5b_L 272 SIDVNG 277 (400)
T ss_dssp EEETTS
T ss_pred EEeCCC
Confidence 999875
No 248
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.43 E-value=0.00067 Score=63.85 Aligned_cols=204 Identities=3% Similarity=-0.059 Sum_probs=129.5
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGK 216 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~ 216 (496)
.....+..++|.+.++.++.+-...+.|+.+++.... ....+..... ...++++.+.+ +++++-..
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~------------~~~~~~~~~~-~p~glavd~~~g~ly~~d~~ 136 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------------VEEVVSTGLE-SPGGLAVDWVHDKLYWTDSG 136 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEECSSCS-CCCEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC------------ceEEEeCCCC-CccEEEEecCCCeEEEEcCC
Confidence 3345578999998677777777778899999987652 1112221112 24688888754 45556666
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
.+.|.+.+++..... ..+........++++.|.+..++++
T Consensus 137 ~~~I~~~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 137 TSRIEVANLDGAHRK----------------------------------------VLLWQSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp TTEEEEEETTSCSCE----------------------------------------EEECTTCSCEEEEEEETTTTEEEEE
T ss_pred CCeEEEEcCCCCceE----------------------------------------EEEeCCCCCcceEEEecCcCeEEEe
Confidence 788999887642110 1112223456899999976567777
Q ss_pred EcCC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997 297 VGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (496)
Q Consensus 297 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i 375 (496)
-... +.|..+++.... ........-...+.|+++|..+.+.++-+..+.|..+|+.. ......+...-...
T Consensus 177 d~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG------~~~~~~~~~~~~~P 248 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHP 248 (349)
T ss_dssp ECSSSCEEEEEETTSCS--CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSSE
T ss_pred ccCCCCEEEEEeCCCCC--cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC------CceEEEEeCCCCCc
Confidence 6666 889999886543 22222223456789999984556666666778899999874 22222233334556
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
..|++. +..++.+-...+.|..++...
T Consensus 249 ~giav~--~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 249 FAITVF--EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred eEEEEE--CCEEEEecCCCCeEEEEEccC
Confidence 788883 334777777788888888544
No 249
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.42 E-value=2.6e-05 Score=80.48 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=62.4
Q ss_pred CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (496)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 425 (496)
|.|..||+.+ ++.+.++. +..++....+...+..+ +.++.||.+++||..+. +.+..
T Consensus 457 g~l~A~D~~t------G~~~W~~~-~~~~~~~g~~~~~g~~v-~~g~~dg~l~a~D~~tG---------------~~lw~ 513 (677)
T 1kb0_A 457 GRLLAWDPVA------QKAAWSVE-HVSPWNGGTLTTAGNVV-FQGTADGRLVAYHAATG---------------EKLWE 513 (677)
T ss_dssp EEEEEEETTT------TEEEEEEE-ESSSCCCCEEEETTTEE-EEECTTSEEEEEETTTC---------------CEEEE
T ss_pred cEEEEEeCCC------CcEEeecC-CCCCCcCcceEeCCCEE-EEECCCCcEEEEECCCC---------------ceeee
Confidence 7899999988 67666665 33444455566677644 57889999999999985 33443
Q ss_pred ec-CCCCCcceEEecCCCCcEEEEecCC---------CCCCCCCCeEEEeecCC
Q 010997 426 HA-GHRDKVVDFHWNASDPWTVVSVSDD---------CDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 426 ~~-~h~~~V~~~~~~p~~~~l~~s~s~d---------~~sgg~Dg~i~iw~~~~ 469 (496)
+. ++...-.-+.|..+|..+++..+.- .......+.+.+|.+..
T Consensus 514 ~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 514 APTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred eeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 33 3333334566667776555543220 00011147888898874
No 250
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.41 E-value=0.00035 Score=66.83 Aligned_cols=204 Identities=3% Similarity=-0.059 Sum_probs=128.7
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK 216 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~ 216 (496)
.-...+..++|.+.++.++.+-...+.|+.+++.... ....+..... ...++++.+.+. ++++-..
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~------------~~~~~~~~~~-~p~glavd~~~g~lY~~d~~ 179 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------------VEEVVSTGLE-SPGGLAVDWVHDKLYWTDSG 179 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------------EEEEECSSCS-CCCCEEEETTTTEEEEEETT
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC------------cEEEEeCCCC-CccEEEEEeCCCeEEEEcCC
Confidence 3345678999998677777777778899999987651 1111221112 236788887544 4455556
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
.+.|.+.+++..... ..+........++++.|.+..++++
T Consensus 180 ~~~I~~~~~dg~~~~----------------------------------------~l~~~~l~~P~giavdp~~g~ly~t 219 (386)
T 3v65_B 180 TSRIEVANLDGAHRK----------------------------------------VLLWQSLEKPRAIALHPMEGTIYWT 219 (386)
T ss_dssp TTEEEECBTTSCSCE----------------------------------------EEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCeEEEEeCCCCceE----------------------------------------EeecCCCCCCcEEEEEcCCCeEEEe
Confidence 778888777532110 1122223457899999877566776
Q ss_pred EcCC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997 297 VGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (496)
Q Consensus 297 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i 375 (496)
-... +.|..+++.... ........-...+.|+|+|..+.++++-+..+.|..+|+.. ......+.......
T Consensus 220 d~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P 291 (386)
T 3v65_B 220 DWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHP 291 (386)
T ss_dssp ECSSSCEEEEEETTSCS--CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS------CSCEEEECSSCSSE
T ss_pred ccCCCCEEEEEeCCCCC--cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC------CeeEEEEECCCCCc
Confidence 6555 789888886544 22222233456789999984556666666778899999864 22222233334456
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
..|++. +..++.+....+.|..+|...
T Consensus 292 ~giav~--~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 292 FAITVF--EDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred eEEEEE--CCEEEEeeCCCCeEEEEECCC
Confidence 788883 334777877788898888544
No 251
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.40 E-value=3.8e-05 Score=73.28 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=116.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~ 232 (496)
+..++.++.++.|..+|..++. .......... ....... .+..++.++.++.|..+|..++....
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~------------~~W~~~~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGT------------VAWQTKVAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKW 167 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCC------------EEEEEECSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCC------------EEEEEeCCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 3466778889999999998883 2223322221 1111122 24467788889999999998876544
Q ss_pred cCCcccccc-CC--CC----CceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC-------ceeEEEEcc--CCCceEEE
Q 010997 233 ATDPATAKS-AG--SS----GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-------TVEDVTFCP--SSAQEFCS 296 (496)
Q Consensus 233 ~~~~~~~~~-~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~~~--~~~~~l~s 296 (496)
......... .. .. ...+... ...+.+..++..+.+.+........ .+.++...| .+ ..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~v~~g--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~ 244 (376)
T 3q7m_A 168 TVNLDMPSLSLRGESAPTTAFGAAVVG--GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFA 244 (376)
T ss_dssp EEECCC-----CCCCCCEEETTEEEEC--CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEE
T ss_pred EEeCCCCceeecCCCCcEEECCEEEEE--cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEE
Confidence 332211100 00 00 0011111 1122233333333433333221100 000000111 12 45777
Q ss_pred EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc-CCCCE
Q 010997 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-HSAAV 375 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~i 375 (496)
++.++.+..+|.++++ ...... ......+.. .+..+..++.++.|..+|..+ ++.+..... ....+
T Consensus 245 ~~~~g~l~~~d~~tG~--~~w~~~--~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~ 311 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQ--IMWKRE--LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG------GVTLWTQSDLLHRLL 311 (376)
T ss_dssp ECTTSCEEEEETTTCC--EEEEEC--CCCEEEEEE---ETTEEEEEETTCCEEEEETTT------CCEEEEECTTTTSCC
T ss_pred EecCcEEEEEECCCCc--EEeecc--CCCCCCceE---ECCEEEEEcCCCeEEEEECCC------CcEEEeecccCCCcc
Confidence 7889999999999887 333322 233444544 356677778899999999988 666655542 12222
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
...... +..| ..++.+|.|.++|..+.
T Consensus 312 ~~~~~~--~~~l-~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 312 TSPVLY--NGNL-VVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CCCEEE--TTEE-EEECTTSEEEEEETTTC
T ss_pred cCCEEE--CCEE-EEEeCCCeEEEEECCCC
Confidence 223332 3334 47788999999999874
No 252
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.39 E-value=5.4e-05 Score=72.23 Aligned_cols=222 Identities=13% Similarity=0.070 Sum_probs=115.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC--------CCcceeeeecCCCCceEEecCCCcEEEEe
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--------DNAEFALAMCPTEPYVLSGGKDKSVVLWS 224 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~--------~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd 224 (496)
+..|..++.++.|..+|..++... ....... ...+.+ ....++..++.++.++.|..+|
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~------------W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d 119 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEI------------WSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALN 119 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEE------------EEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCcee------------eeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEE
Confidence 346667778889999999887322 2222110 111111 1112455777888899999999
Q ss_pred cCCccccccCCccccccCCC--CCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce-----eEEEEccCCCceEEEE
Q 010997 225 IQDHITSSATDPATAKSAGS--SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSV 297 (496)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~ 297 (496)
..+++............... ....+... ...+.+..++..+.+.+..+....... ...... + ..++.+
T Consensus 120 ~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~--~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g 194 (376)
T 3q7m_A 120 TSDGTVAWQTKVAGEALSRPVVSDGLVLIH--TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVG 194 (376)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEETTEEEEE--CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEEC
T ss_pred CCCCCEEEEEeCCCceEcCCEEECCEEEEE--cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEE
Confidence 98876544332211100000 00011110 112233333444444433333221110 111222 2 357778
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCC-------CeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDA-------DLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (496)
+.++.|..+|..+++ .......... .+..+.-.|. .+..+..++.++.|..+|.++ ++.+....
T Consensus 195 ~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t------G~~~w~~~ 266 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS------GQIMWKRE 266 (376)
T ss_dssp CTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT------CCEEEEEC
T ss_pred cCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC------CcEEeecc
Confidence 889999999999887 3322221110 0000111110 246677788899999999988 66665554
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
......+... +..++ .++.++.|..+|..+.
T Consensus 267 --~~~~~~~~~~--~~~l~-~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 267 --LGSVNDFIVD--GNRIY-LVDQNDRVMALTIDGG 297 (376)
T ss_dssp --CCCEEEEEEE--TTEEE-EEETTCCEEEEETTTC
T ss_pred --CCCCCCceEE--CCEEE-EEcCCCeEEEEECCCC
Confidence 2334455443 44354 6677899999999874
No 253
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.37 E-value=3e-05 Score=80.24 Aligned_cols=83 Identities=6% Similarity=0.001 Sum_probs=53.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
+|.|..||+.+ ++.+.++..+. ++....+...+. ++..++.||.++.||.+++ +++.
T Consensus 454 ~g~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG---------------~~lw 510 (689)
T 1yiq_A 454 SGKLIAWDPVK------QQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTG---------------EKLW 510 (689)
T ss_dssp EEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTC---------------CEEE
T ss_pred ceeEEEEECCC------CCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCC---------------ccce
Confidence 37799999998 77777665443 233334555666 4558899999999999985 3444
Q ss_pred EecCC-CCCcceEEecCCCCcEEEEec
Q 010997 425 QHAGH-RDKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 425 ~~~~h-~~~V~~~~~~p~~~~l~~s~s 450 (496)
.+... .....-+.|..+|...++..+
T Consensus 511 ~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 511 EQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eeeCCCCcccCceEEEECCEEEEEEEe
Confidence 44332 222345677777776665543
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.36 E-value=8.9e-05 Score=65.49 Aligned_cols=181 Identities=5% Similarity=0.001 Sum_probs=116.1
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
..+|.|+ ++.++++.+.+|.|+++|+++++..... +.. .
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---------------------------------------l~~-~ 95 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---------------------------------------RLG-N 95 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---------------------------------------ECT-T
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---------------------------------------CCC-C
Confidence 3578887 4567778888999999999876543211 111 1
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
.--..+.+ .+..++++.-.++.+.+||..+.+ .+..+.. ...-..+++ ++..|+.+..++.|.++|..+
T Consensus 96 ~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~-~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T--- 164 (268)
T 3nok_A 96 IFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ--RERTTRY-SGEGWGLCY---WNGKLVRSDGGTMLTFHEPDG--- 164 (268)
T ss_dssp CCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE--EEEEEEC-SSCCCCEEE---ETTEEEEECSSSEEEEECTTT---
T ss_pred cceeEEEE--eCCEEEEEEccCCEEEEEECCcCc--EEEEEeC-CCceeEEec---CCCEEEEECCCCEEEEEcCCC---
Confidence 11123444 344567777789999999999877 4444432 222234454 456666666789999999998
Q ss_pred CCCCCCceEeccCC-----CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec------
Q 010997 359 NGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA------ 427 (496)
Q Consensus 359 ~~~~~~~~~~~~h~-----~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------ 427 (496)
.+.+.++.... ..++.+.|. +|. |+|..-.++.|.+-|..++.-.. ...+.
T Consensus 165 ---~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~-------------~Idl~~L~~~~ 226 (268)
T 3nok_A 165 ---FALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVG-------------VIDASALTRAV 226 (268)
T ss_dssp ---CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEE-------------EEECHHHHHHH
T ss_pred ---CeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEE-------------EEECCCCcccc
Confidence 56666654321 245778887 664 88777678899999998742110 01111
Q ss_pred -----CCCCCcceEEecCCCCcEEEEe
Q 010997 428 -----GHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 428 -----~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
.-.+..+.+||+|++..|++++
T Consensus 227 ~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 227 AGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccccCcCCceEEEEEcCCCCEEEEeC
Confidence 1123568999999988888865
No 255
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.35 E-value=0.00018 Score=75.39 Aligned_cols=197 Identities=13% Similarity=0.120 Sum_probs=109.6
Q ss_pred ceeEEEec-CCCCcEEEEEe-CCC----cEEEEeCCCC-CCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 142 EVNRIREL-PQNTKIVATHT-DSP----DVLIWDVEAQ-PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 142 ~V~~l~~~-p~~~~~lat~~-~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
.+...+|+ | ++++||-+. .+| .|+++|+.++ .... . .+.. ....++|+|||+.|+..
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------~---~~~~----~~~~~~WspDg~~l~y~ 238 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------D---KVSG----TNGEIVWGPDHTSLFYV 238 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------C---CEEE----ECSCCEECSSTTEEEEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------c---cccC----ceeeEEEecCCCEEEEE
Confidence 57788999 8 777776443 333 4999999876 3110 0 1111 23578999999877766
Q ss_pred cCC-----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEcc
Q 010997 215 GKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP 288 (496)
Q Consensus 215 ~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~ 288 (496)
..| ..|.++++.++... ....+. ........+.|+|
T Consensus 239 ~~d~~~~~~~v~~~~lgt~~~~--------------------------------------~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 239 TKDETLRENKVWRHVMGKLQSE--------------------------------------DVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp EECTTCCEEEEEEEETTSCGGG--------------------------------------CEEEEECCCTTCEEEEEECT
T ss_pred EECCCCCCCEEEEEECCCCchh--------------------------------------cEEEEecCCCceEEEEEECC
Confidence 655 25667776543210 011222 1223456789999
Q ss_pred CCCceEEEEc--CCCeEEEEEccCCCccc--eeeeccCCCCeEEEEecCCCCcEEEEEcCC--C--cEEEEeCCCCCCCC
Q 010997 289 SSAQEFCSVG--DDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSAD--N--SVRMFDRRNLTSNG 360 (496)
Q Consensus 289 ~~~~~l~s~~--~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d--g--~i~iwd~~~~~~~~ 360 (496)
++..++++.. ....|.++|+.++.... .............+.|+. ++.+++....+ + .|..+|+.+
T Consensus 281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~----- 354 (751)
T 2xe4_A 281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ----- 354 (751)
T ss_dssp TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS-----
T ss_pred CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC-----
Confidence 9954444443 23468888987753222 222233445566676655 44455555443 3 566666653
Q ss_pred CCCCceE-eccCCCC--EEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997 361 VGSPINK-FEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 361 ~~~~~~~-~~~h~~~--i~~l~~sp~~~~llas~~~dg~i~iwd 401 (496)
...... +..+... +..+.+ .+..|+++...++..+||-
T Consensus 355 -~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 355 -PSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp -TTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred -cccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence 111222 2233333 444444 4566777888888655443
No 256
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.31 E-value=7.1e-06 Score=77.57 Aligned_cols=258 Identities=9% Similarity=-0.062 Sum_probs=138.8
Q ss_pred cEEEEEeCCC----cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec----------CCCc
Q 010997 154 KIVATHTDSP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKS 219 (496)
Q Consensus 154 ~~lat~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~----------~Dg~ 219 (496)
..+++-..++ .|.+.|..+. +.+..+..-.. + .+.++|++++++.+. .++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~------------~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~ 97 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCG------------VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTT------------EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred eEEEECCccCCccceEEEEECCCC------------eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCE
Confidence 3444544444 8889999888 45555554443 4 799999999888775 4789
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-------CCceeEEEEccCCCc
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-------EDTVEDVTFCPSSAQ 292 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~ 292 (496)
|.+||+.+.+.. ..+.-. ......+.++|++.
T Consensus 98 VsviD~~T~~vv----------------------------------------~~I~v~~~~~~~~g~~P~~ia~SpDGk- 136 (368)
T 1mda_H 98 VEVFDPVTFLPI----------------------------------------ADIELPDAPRFSVGPRVHIIGNCASSA- 136 (368)
T ss_dssp EEEECTTTCCEE----------------------------------------EEEEETTSCSCCBSCCTTSEEECTTSS-
T ss_pred EEEEECCCCCEE----------------------------------------EEEECCCccccccCCCcceEEEcCCCC-
Confidence 999999875432 222111 12345789999994
Q ss_pred eEEEEc-C-CCeEEE--EEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc---
Q 010997 293 EFCSVG-D-DSCLIL--WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI--- 365 (496)
Q Consensus 293 ~l~s~~-~-dg~i~i--wd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--- 365 (496)
+++.+. . +..|.+ +|+.+ . ..... ... +.+.|.....+++.+.||.+.+.|+....... ++..
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t-v----~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~-~~v~~~~ 206 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD-D----QLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA-GIVGAQC 206 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE-E----EEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC-EECCCCS
T ss_pred EEEEEccCCCCeEEEEEEchhh-c----eEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccC-CeEEEEe
Confidence 555554 3 467888 88876 1 11111 111 22334234566677788888888887500000 0111
Q ss_pred -eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCC
Q 010997 366 -NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDP 443 (496)
Q Consensus 366 -~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~ 443 (496)
..+.....+. . ++++..++ ..+. +.|.+.|+.............. ..... ..+ +......++++|++.
T Consensus 207 t~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~-~~~~~---~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 207 TGAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGN-ESGRK---ADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CTTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSS-CTHHH---HTTEEECSSSCEEEETTTT
T ss_pred eeeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEec-ccccc---ccccccCcceeeEEcCCCC
Confidence 0111123343 3 56665544 3444 8999999865211100000000 00000 000 011222378999999
Q ss_pred cEEEEec---CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997 444 WTVVSVS---DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496 (496)
Q Consensus 444 ~l~~s~s---~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP 496 (496)
.++++.. ..+ -+. ++.+.++|+. +.+.++++.... ....++|+|
T Consensus 277 ~lyV~~~~~~~~~-~~~-~~~~~ViD~~------t~~vv~~i~vg~-~p~gi~~s~ 323 (368)
T 1mda_H 277 GIMILTVEHSRSC-LAA-AENTSSVTAS------VGQTSGPISNGH-DSDAIIAAQ 323 (368)
T ss_dssp EEEEEEEECSSCT-TSC-EEEEEEEESS------SCCEEECCEEEE-EECEEEECC
T ss_pred EEEEEeccccCcc-ccc-CCCEEEEECC------CCeEEEEEECCC-CcceEEECC
Confidence 8887643 100 000 1345599998 556666665443 456666665
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.31 E-value=0.00025 Score=62.09 Aligned_cols=195 Identities=9% Similarity=-0.022 Sum_probs=113.6
Q ss_pred cceeeeecCCCCceEEecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee
Q 010997 198 AEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 275 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (496)
-..+|.|++ +.++.+.+.+| +|+.+|+.+++...... +.
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~--------------------------------------l~ 62 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE--------------------------------------VP 62 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE--------------------------------------CC
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe--------------------------------------CC
Confidence 355889986 56666777654 99999998765432111 00
Q ss_pred cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
.+ .--..+.+. +..+++..-.++.+.+||..+.+ .+..+... ..-..++. ++..|+.+..++.|.++|..+
T Consensus 63 ~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~-~~Gwglt~---dg~~L~vSdgs~~l~~iDp~t 133 (243)
T 3mbr_X 63 PP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYP-GEGWALTS---DDSHLYMSDGTAVIRKLDPDT 133 (243)
T ss_dssp TT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECS-SCCCEEEE---CSSCEEEECSSSEEEEECTTT
T ss_pred CC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCC-CCceEEee---CCCEEEEECCCCeEEEEeCCC
Confidence 11 011233333 33566677789999999998877 44444322 22245554 445555555688999999998
Q ss_pred CCCCCCCCCceEeccCC-----CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC
Q 010997 356 LTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 430 (496)
Q Consensus 356 ~~~~~~~~~~~~~~~h~-----~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 430 (496)
.+.+.++.... ..++.+.|. +|. ++|..-.+..|.+.|..++.......-... .+.... ....-.
T Consensus 134 ------~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l-~~~~~~-~~~~~~ 203 (243)
T 3mbr_X 134 ------LQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQAL-VPDADA-LTDSTN 203 (243)
T ss_dssp ------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGG-STTTTS-CCCTTS
T ss_pred ------CeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcC-cccccc-ccCCcC
Confidence 55666664321 345677776 554 777776678899999988421110000000 000000 000112
Q ss_pred CCcceEEecCCCCcEEEEec
Q 010997 431 DKVVDFHWNASDPWTVVSVS 450 (496)
Q Consensus 431 ~~V~~~~~~p~~~~l~~s~s 450 (496)
...+.++|+|++..+++++-
T Consensus 204 ~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp SCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEEcCCCCEEEEECC
Confidence 35688999999888888653
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.30 E-value=4.3e-05 Score=75.55 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=101.8
Q ss_pred ceeEEEE-c-cCCCceEEEE-----------------cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997 280 TVEDVTF-C-PSSAQEFCSV-----------------GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 340 (496)
Q Consensus 280 ~v~~l~~-~-~~~~~~l~s~-----------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 340 (496)
....+++ + |++..+++++ -.++.+.+.|..+.+ ......... ....++++| ++.+++
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~--v~~qI~Vgg-~pd~~~~sp-dGk~~~ 210 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE--VAWQVLVSG-NLDNCDADY-EGKWAF 210 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE--EEEEEEESS-CCCCEEECS-SSSEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe--EEEEEEeCC-CccceEECC-CCCEEE
Confidence 4567776 4 7774444442 345689999998765 333332212 345677888 777777
Q ss_pred EEcCCC--------------------------------------cEEEEeCCCCCCCCCCCC-ceEeccCCCCEEEEEEc
Q 010997 341 TGSADN--------------------------------------SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWS 381 (496)
Q Consensus 341 sgs~dg--------------------------------------~i~iwd~~~~~~~~~~~~-~~~~~~h~~~i~~l~~s 381 (496)
+.+.+. .|.+.|.++.. +.. +..+.. .....++.++
T Consensus 211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~s 285 (595)
T 1fwx_A 211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMA 285 (595)
T ss_dssp EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEE-ESSCCCEEEC
T ss_pred EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEec-CCCceEEEEc
Confidence 776443 36666666411 122 333432 2345689999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT 461 (496)
Q Consensus 382 p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~ 461 (496)
|||+++++++..+..|.++|+.+........ . .+...+.....-......++|+|+| ++.++.-- |+.
T Consensus 286 PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~---l-~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-------dsq 353 (595)
T 1fwx_A 286 PDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN---A-DPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-------DSQ 353 (595)
T ss_dssp TTSSEEEEECTTSSBEEEEEGGGHHHHHHSC---C-CGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT-------TTE
T ss_pred CCCCEEEEeCCCCCeEEEEECcccccccccc---c-CcccceEEEcCCCCCcceEEECCCC-eEEEEEec-------CCc
Confidence 9999999888889999999998631100000 0 0011111111223457889999999 76665544 599
Q ss_pred EEEeecC
Q 010997 462 LQIWRMS 468 (496)
Q Consensus 462 i~iw~~~ 468 (496)
|.+|++.
T Consensus 354 V~kwdi~ 360 (595)
T 1fwx_A 354 VVKWNIE 360 (595)
T ss_dssp EEEEEHH
T ss_pred EEEEEhh
Confidence 9999987
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.29 E-value=0.0019 Score=59.76 Aligned_cols=207 Identities=8% Similarity=-0.025 Sum_probs=126.2
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecC
Q 010997 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK 216 (496)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~ 216 (496)
.....+..++|.+.++.++.+-...+.|..+++...... ......+...-. ...++++.+.+. ++++-..
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--------~~~~~~~~~~~~-~p~glavd~~~~~ly~~d~~ 97 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSV 97 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CCCEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--------cccEEEEeCCCC-CcCEEEEeecCCeEEEEECC
Confidence 344567899999866777777777889999998762000 011112222112 246888886544 4455566
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
.+.|.+.+++..... ..+........++++.|.+..++++
T Consensus 98 ~~~I~~~~~~g~~~~----------------------------------------~~~~~~~~~P~~iavdp~~g~ly~~ 137 (316)
T 1ijq_A 98 LGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYWT 137 (316)
T ss_dssp TTEEEEEETTSSSEE----------------------------------------EEEECTTCCEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCceE----------------------------------------EEEECCCCCcceEEeCCCCCEEEEE
Confidence 789999887632110 1112223456899999876566666
Q ss_pred EcCC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCC
Q 010997 297 VGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHS 372 (496)
Q Consensus 297 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~ 372 (496)
.... +.|...++.... ........-...+.|+++|..+.++++-+..+.|..+|+.. .....+. ..-
T Consensus 138 d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-------~~~~~~~~~~~~~ 208 (316)
T 1ijq_A 138 DWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRL 208 (316)
T ss_dssp ECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTTTT
T ss_pred ccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-------CceEEEeecCCcc
Confidence 5444 788888875433 11122223456789999984455556666778999999874 2233332 123
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.....+++. +..++++-...+.|..++...
T Consensus 209 ~~P~giav~--~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 209 AHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCcEEEEEE--CCEEEEEECCCCeEEEEeCCC
Confidence 456788885 345777777788999998755
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.26 E-value=0.00022 Score=65.85 Aligned_cols=198 Identities=13% Similarity=0.043 Sum_probs=117.2
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
..+++|+++++++++-..++.|..||...... . .....
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------------------------------------~-~~~~~ 71 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------------------I-HATVE 71 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------------------E-EEECS
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------------------------------------E-EEeCC
Confidence 57899999998777777789999998764211 1 11122
Q ss_pred CceeEEEEccCCCceEEEEcCC--CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
..+..+++.+++ +++++.... ..|..+|..+++....... ........++..+ ++..+++-..++.|..+|....
T Consensus 72 ~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 72 GKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp SEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTT
T ss_pred CCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCC
Confidence 457899999998 555554332 2466777766652111111 1223345555555 5555666656889999997641
Q ss_pred CCCCCCCCce--------EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997 357 TSNGVGSPIN--------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (496)
Q Consensus 357 ~~~~~~~~~~--------~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (496)
. ..... .....-.....+ +|++.+|+++-...+.|..|++...+.. .....+...
T Consensus 149 ~----~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---------~~~~~~~~~-- 211 (306)
T 2p4o_A 149 S----GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---------GEPEIFVEQ-- 211 (306)
T ss_dssp E----EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---------CCCEEEEES--
T ss_pred c----EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---------CccEEEecc--
Confidence 0 01100 000111234556 8888888888888899999998752111 111222221
Q ss_pred CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.....+++.++|. ++++... .+.|.+++..
T Consensus 212 --~~P~gi~vd~dG~-l~va~~~-------~~~V~~~~~~ 241 (306)
T 2p4o_A 212 --TNIDDFAFDVEGN-LYGATHI-------YNSVVRIAPD 241 (306)
T ss_dssp --CCCSSEEEBTTCC-EEEECBT-------TCCEEEECTT
T ss_pred --CCCCCeEECCCCC-EEEEeCC-------CCeEEEECCC
Confidence 3467889999885 4554332 3789999876
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.26 E-value=6.8e-05 Score=77.35 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=48.7
Q ss_pred EEEecCCCCcEEEEEeCCC-----------cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997 145 RIRELPQNTKIVATHTDSP-----------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (496)
Q Consensus 145 ~l~~~p~~~~~lat~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s 213 (496)
.+++.|.++++++.|+.+. .+.+||..+.. ......+.........++++.++++.++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~----------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI----------VSDRTVTVTKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC----------BCCCEEEECSCCCSSCEEEECTTSCEEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc----------EEeCcccCCCCCCccccccCCCCCCEEEe
Confidence 5566665778888887643 58899988772 23333333322212335677788998999
Q ss_pred ecC-CCcEEEEecCCc
Q 010997 214 GGK-DKSVVLWSIQDH 228 (496)
Q Consensus 214 g~~-Dg~i~iwd~~~~ 228 (496)
|+. +..+.+||..+.
T Consensus 260 GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSD 275 (656)
T ss_dssp CSSSTTCEEEEEGGGT
T ss_pred CCCCCCceEEecCcCC
Confidence 884 568999998754
No 262
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.23 E-value=0.00054 Score=63.50 Aligned_cols=183 Identities=5% Similarity=-0.024 Sum_probs=115.8
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
...|+..++..... .....+.+-. ...+++|.+.+. ++.+-...+.|..++++.....
T Consensus 12 ~~~I~~i~l~~~~~----------~~~~~~~~~~--~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------- 70 (318)
T 3sov_A 12 RRDLRLVDATNGKE----------NATIVVGGLE--DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------- 70 (318)
T ss_dssp EEEEEEEETTCTTS----------CCEEEEEEEE--EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---------
T ss_pred cCeEEEEECCCCce----------EEEEEecCCC--ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---------
Confidence 35789999876520 1112223322 246899998644 5556566788888887643110
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (496)
...+.........+++.+.+..++++-...+.|.++++.... ......
T Consensus 71 ------------------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l~~ 118 (318)
T 3sov_A 71 ------------------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFW 118 (318)
T ss_dssp ------------------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEEC
T ss_pred ------------------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--EEEEEe
Confidence 011222223467888887665777887788899999987544 222222
Q ss_pred cCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 321 AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 321 ~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
........++++|..+.++.+-. ..+.|...++.. .....+ ...-.....|+|+|++..|+.+-+..+.|.
T Consensus 119 ~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-------SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-------CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence 44466789999984444445442 357888888763 333333 222345789999998887887777788999
Q ss_pred EEECCC
Q 010997 399 IWDYEK 404 (496)
Q Consensus 399 iwd~~~ 404 (496)
.+|+..
T Consensus 192 ~~d~dG 197 (318)
T 3sov_A 192 KSNLDG 197 (318)
T ss_dssp EEETTS
T ss_pred EEcCCC
Confidence 999875
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.19 E-value=0.0039 Score=59.77 Aligned_cols=209 Identities=9% Similarity=-0.017 Sum_probs=127.8
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEec
Q 010997 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG 215 (496)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~ 215 (496)
+.....+..++|.+.++.++.+-...+.|+.+++...... ......+..... ...+|++.+. ++++++-.
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--------~~~~~~~~~~~~-~p~glavD~~~~~lY~~d~ 178 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDS 178 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CCCEEEECSSCS-CEEEEEEETTTTEEEEEET
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--------CcceEEEeCCCC-CcccEEEEecCCceEEEEC
Confidence 4456678999999867777777777889999998753100 011122221222 3468888874 44555656
Q ss_pred CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
..+.|.+.+++..... ..+........+|++.|.++.+++
T Consensus 179 ~~~~I~~~~~~g~~~~----------------------------------------~l~~~~~~~P~~iavdp~~g~ly~ 218 (400)
T 3p5b_L 179 VLGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYW 218 (400)
T ss_dssp TTTEEEEECTTTCSEE----------------------------------------EEEECSSCCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEeCCCCceE----------------------------------------EEEeCCCCCcceEEEecccCeEEE
Confidence 6788888887642210 112223345789999997656666
Q ss_pred EEcC-CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-c--cC
Q 010997 296 SVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-E--GH 371 (496)
Q Consensus 296 s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~--~h 371 (496)
+-.. .+.|...++.... ........-...+.|+++|..+.+.++-+..+.|..+|+.. .....+ . ..
T Consensus 219 td~~~~~~I~~~~~dG~~--~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~ 289 (400)
T 3p5b_L 219 TDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKR 289 (400)
T ss_dssp EECSSSCCEEEEETTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CCCEEEEECSST
T ss_pred EeCCCCCEEEEEeCCCCc--cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-------CccEEEEeCCCC
Confidence 6533 4788888886544 22222233457899999984455555556678899999874 223333 2 12
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
-.....|++. +..++.+....+.|..+|..++
T Consensus 290 l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 290 LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TSSEEEEEEE--TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCC
Confidence 3445677773 4457778877889999986553
No 264
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.17 E-value=0.00092 Score=69.70 Aligned_cols=184 Identities=5% Similarity=-0.049 Sum_probs=116.2
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
...|+..++... .....+.+.. .+.+|+|.+.+. ++++-...+.|..+++......
T Consensus 403 ~~~Ir~i~l~~~------------~~~~l~~~~~--~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~--------- 459 (791)
T 3m0c_C 403 RHEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------- 459 (791)
T ss_dssp BSSEEEECTTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred ccceeEeeccCC------------cceeeecCCC--ceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---------
Confidence 346777777654 2222333333 357899988544 4555566788888887642100
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (496)
......+.........|++.+.+.+++++-...+.|.+.++.... ......
T Consensus 460 ---------------------------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--~~~l~~ 510 (791)
T 3m0c_C 460 ---------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFR 510 (791)
T ss_dssp -----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEE
T ss_pred ---------------------------cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--EEEEEe
Confidence 000122222344567889988776788888888999999987554 222222
Q ss_pred cCCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 321 AHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 321 ~~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
........|+++|..+.++++-... +.|...++.. .....+. ..-.....|++++.+..|+++-...+.|.
T Consensus 511 ~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-------~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~ 583 (791)
T 3m0c_C 511 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 583 (791)
T ss_dssp CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-------CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence 3445688999999445555554333 7888888874 3343333 23357889999988887887766678899
Q ss_pred EEECCC
Q 010997 399 IWDYEK 404 (496)
Q Consensus 399 iwd~~~ 404 (496)
..++..
T Consensus 584 ~~d~dG 589 (791)
T 3m0c_C 584 SIDVNG 589 (791)
T ss_dssp EEETTS
T ss_pred EEecCC
Confidence 999865
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.17 E-value=0.00021 Score=66.50 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=72.8
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC----------CCcEE
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA----------DNSVR 349 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~----------dg~i~ 349 (496)
....|+|+|++..++++-...+.|.+|++..........+..... ...+++++ ++++.++... .+.|.
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEE
Confidence 356789999984456666777899999987532111122211223 78899999 7877666544 46688
Q ss_pred EEeCCCCCCCCCCCCceEeccCC----CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 350 MFDRRNLTSNGVGSPINKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~----~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.+|.. +..+..+.... ..++.+++. ++ .|+++....+.|.++++..
T Consensus 264 ~~d~~-------G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 264 KFDEF-------GNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECTT-------SCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC--
T ss_pred EECCC-------CCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEeccc
Confidence 88764 45565554332 346667663 44 4777777788999999875
No 266
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.14 E-value=7.5e-05 Score=77.01 Aligned_cols=176 Identities=10% Similarity=0.090 Sum_probs=88.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEecC------CCcEEEEec
Q 010997 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGK------DKSVVLWSI 225 (496)
Q Consensus 154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~~------Dg~i~iwd~ 225 (496)
..|+.++.|+.|..+|..++. .+..+..........+.-.| .+..++.+.. +|.|..+|.
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~------------~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~ 185 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGK------------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDA 185 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCC------------EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred CEEEEEcCCCEEEEEECCCCC------------EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEEC
Confidence 467778889999999999883 22232221100011111122 1334444432 589999999
Q ss_pred CCccccccCCcccc-ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC---
Q 010997 226 QDHITSSATDPATA-KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--- 301 (496)
Q Consensus 226 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--- 301 (496)
.+++.......... ............ ....+. ......+.++......+++.|.. .+++.++.++
T Consensus 186 ~tG~~~W~~~~~~~~p~~~~~~~~~~~-------~~~~~~---g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w 254 (668)
T 1kv9_A 186 DTGKLAWRFYTVPGDPALPYEHPELRE-------AAKTWQ---GDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPW 254 (668)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHH-------HHTTCC---SSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESS
T ss_pred CCCcEEEEecccCCCCCcccccccccc-------ccccCC---ccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCcc
Confidence 98876554332100 000000000000 000000 00000001122223456787776 5677776665
Q ss_pred ----------------eEEEEEccCCCccceeeecc--CC-------CCeEEEEecCCCCc---EEEEEcCCCcEEEEeC
Q 010997 302 ----------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRMFDR 353 (496)
Q Consensus 302 ----------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~i~~sp~~~~---~l~sgs~dg~i~iwd~ 353 (496)
.|..+|.++++ ....+.. |. .++....+.. ++. .++.++.+|.+.++|.
T Consensus 255 ~~~~~~~~~gd~l~~~~v~AlD~~tG~--~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~ 331 (668)
T 1kv9_A 255 NREVRSPGGGDNLYLSSILAIRPDTGK--LAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDR 331 (668)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEET
T ss_pred ccCCCCCCCCCceeeeeEEEEcCCCCc--eeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEEC
Confidence 49999999988 3333322 22 2222222222 443 6889999999999999
Q ss_pred CC
Q 010997 354 RN 355 (496)
Q Consensus 354 ~~ 355 (496)
.+
T Consensus 332 ~t 333 (668)
T 1kv9_A 332 TN 333 (668)
T ss_dssp TT
T ss_pred CC
Confidence 88
No 267
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.13 E-value=1.4e-05 Score=82.63 Aligned_cols=115 Identities=4% Similarity=-0.054 Sum_probs=74.8
Q ss_pred eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCC
Q 010997 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSN 359 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~ 359 (496)
...|++.+.+..++++-...+.|.++++.... ..............|+++|..+.++++-... +.|..+++..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG---- 528 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---- 528 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS----
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC----
Confidence 45677776554677776777899999987554 2222222234567889998445555544333 7788887764
Q ss_pred CCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 360 GVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 360 ~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.....+ ...-.....|+|+|++..|+++-+..+.|.++++..
T Consensus 529 ---~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 529 ---VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp ---CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred ---CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 222222 122234678999998888887877788999999865
No 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.12 E-value=0.004 Score=57.58 Aligned_cols=201 Identities=6% Similarity=-0.024 Sum_probs=126.3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEecCCCcE
Q 010997 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSV 220 (496)
Q Consensus 142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i 220 (496)
.+..++|.+.++.++.+-...+.|..+++..... ....+...-. ...++++.+. ++++++-...+.|
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----------~~~~~~~~l~-~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----------VQNVVVSGLL-SPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----------CCEEEEECCS-CCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----------eEEEEcCCCC-CccEEEEEcCCCeEEEEECCCCEE
Confidence 4678899986777777777788999999876511 1111222112 2467888875 4455565667889
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE-cC
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV-GD 299 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~ 299 (496)
.+++++..... ..+........++++.|.++.++++- +.
T Consensus 104 ~~~~~dG~~~~----------------------------------------~l~~~~~~~P~giavdp~~g~ly~td~~~ 143 (318)
T 3sov_A 104 EVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTDWGE 143 (318)
T ss_dssp EEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEEGGGTEEEEEECSS
T ss_pred EEEECCCCcEE----------------------------------------EEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 99987642110 11112334568999998764555554 23
Q ss_pred CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEE
Q 010997 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCV 378 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l 378 (496)
.+.|...++.... ........-...+.|+++|.++.+.++=+..+.|..+|+.. .....+ .+.......+
T Consensus 144 ~~~I~r~~~dG~~--~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~P~gl 214 (318)
T 3sov_A 144 VPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-------TNRQAVVKGSLPHPFAL 214 (318)
T ss_dssp SCEEEEEETTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEECSCCSCEEEE
T ss_pred CCEEEEEEcCCCC--eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-------CceEEEecCCCCCceEE
Confidence 6788888876433 22222223356789999984555666666778999999874 222322 2234556788
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
++.. ..++.+-...+.|..++..++
T Consensus 215 av~~--~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 215 TLFE--DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EEET--TEEEEEETTTTEEEEEETTTC
T ss_pred EEeC--CEEEEEecCCCeEEEEECCCC
Confidence 8753 347777777889999998653
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=0.0022 Score=62.17 Aligned_cols=157 Identities=5% Similarity=-0.009 Sum_probs=92.3
Q ss_pred ceeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CC-
Q 010997 142 EVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK- 218 (496)
Q Consensus 142 ~V~~l~~~p-~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg- 218 (496)
....|+++| .++.++++-.. +.|+.+|+... .. ..+..... ....|+|++++++|+.+.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~------------~v-~~~~~~~~-~P~~ia~d~~G~~lyvad~~~~~ 202 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE------------YV-STVYSGLS-KVRTICWTHEADSMIITNDQNNN 202 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT------------EE-EEEECCCS-CEEEEEECTTSSEEEEEECCSCT
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC------------EE-EEEecCCC-CcceEEEeCCCCEEEEEeCCCCc
Confidence 456788887 35555554443 78888988765 11 12222222 3579999999995555443 22
Q ss_pred ---cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 219 ---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 219 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.+.+.+.. +... ....+.. .....+++++|++..+++
T Consensus 203 ~~~~v~~~~~~-g~~~--------------------------------------~~~~l~~-~~~p~giavdp~~g~lyv 242 (430)
T 3tc9_A 203 DRPNNYILTRE-SGFK--------------------------------------VITELTK-GQNCNGAETHPINGELYF 242 (430)
T ss_dssp TSEEEEEEEGG-GTSC--------------------------------------SEEEEEE-CSSCCCEEECTTTCCEEE
T ss_pred ccceEEEEeCC-Ccee--------------------------------------eeeeecc-CCCceEEEEeCCCCEEEE
Confidence 23223322 1100 0011111 234567889994437777
Q ss_pred EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCC
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRN 355 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~ 355 (496)
+-..++.|..+|........... .......+.|+|+| +++ ++++-...+.|..++...
T Consensus 243 ~d~~~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 243 NSWNAGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCc
Confidence 77788999999987654211111 12224578999999 787 556666778999988763
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.01 E-value=0.00026 Score=74.08 Aligned_cols=158 Identities=15% Similarity=0.066 Sum_probs=90.5
Q ss_pred cceeeeec-CCCCceEEec-CC----CcEEEEecCCc-cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 198 AEFALAMC-PTEPYVLSGG-KD----KSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 198 ~v~~l~~~-p~~~~l~sg~-~D----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
.+...+|+ |||++|+-+. .+ .+|+++|+.++ ... .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----~---------------------------------- 216 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----A---------------------------------- 216 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----C----------------------------------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----C----------------------------------
Confidence 35678999 9999877433 22 35999999865 310 0
Q ss_pred eeeeecCCCceeEEEEccCCCceEEEEcCC-----CeEEEEEccCCCccceeeec-cCCCCeEEEEecCCCCcEEEEEcC
Q 010997 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
..+.. ...++.|+|++..++++ ..| ..|.++++.++.......+. ........+.|+| ++.+|+..+.
T Consensus 217 -~~~~~---~~~~~~WspDg~~l~y~-~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 290 (751)
T 2xe4_A 217 -DKVSG---TNGEIVWGPDHTSLFYV-TKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQ 290 (751)
T ss_dssp -CCEEE---ECSCCEECSSTTEEEEE-EECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEE
T ss_pred -ccccC---ceeeEEEecCCCEEEEE-EECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEec
Confidence 01111 13468899999544444 443 35778888765422122222 2334567889999 8887776553
Q ss_pred ---CCcEEEEeCCCCCCCCCCCC-ceEe-ccCCCCEEEEEEcCCCCCEEEEEeCC----CcEEEEECCC
Q 010997 345 ---DNSVRMFDRRNLTSNGVGSP-INKF-EGHSAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYEK 404 (496)
Q Consensus 345 ---dg~i~iwd~~~~~~~~~~~~-~~~~-~~h~~~i~~l~~sp~~~~llas~~~d----g~i~iwd~~~ 404 (496)
...|.++|+.... ... +..+ ........++.|+. +..|++....+ ..|..+|+..
T Consensus 291 ~~~~~~l~~~d~~~~~----~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 291 SPETAEVHLLDLRKGN----AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CSSCEEEEEEESSSCT----TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCceEEEEECCCCC----CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 3468888987621 122 1333 23345556666654 44455555444 3566666653
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.00 E-value=0.006 Score=59.10 Aligned_cols=201 Identities=9% Similarity=0.049 Sum_probs=112.1
Q ss_pred ceeEEEecCC--CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC--
Q 010997 142 EVNRIRELPQ--NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-- 217 (496)
Q Consensus 142 ~V~~l~~~p~--~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D-- 217 (496)
....|++.|+ ++.++++-.. +.|+.+|..++. . ..+..... ...+++++++++++++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~------------v-~~~~~~~~-~P~giavd~dG~lyVad~~~~~ 204 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY------------V-DIKTTNIG-QCADVNFTLNGDMVVVDDQSSD 204 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE------------E-EEECCCCS-CEEEEEECTTCCEEEEECCSCT
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE------------E-EEeecCCC-CccEEEECCCCCEEEEcCCCCc
Confidence 4568888883 4555555443 789999986651 1 12222222 35799999999944444311
Q ss_pred -Cc-EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997 218 -KS-VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (496)
Q Consensus 218 -g~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (496)
.. +...+...... . ...+. .......++++|.+..+++
T Consensus 205 ~~~gv~~~~~~~~~~------------------------------------~---~~~~~-~~~~P~giavd~~~G~lyv 244 (433)
T 4hw6_A 205 TNTGIYLFTRASGFT------------------------------------E---RLSLC-NARGAKTCAVHPQNGKIYY 244 (433)
T ss_dssp TSEEEEEECGGGTTC------------------------------------C---EEEEE-ECSSBCCCEECTTTCCEEE
T ss_pred ccceEEEEECCCCee------------------------------------c---ccccc-ccCCCCEEEEeCCCCeEEE
Confidence 11 22222111000 0 01111 2234567889994436777
Q ss_pred EEcCCCeEEEEEccCCCccceeeec-cCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC--
Q 010997 296 SVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-- 371 (496)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h-- 371 (496)
+-..++.|+.+|..++... ..... .....-..++|+| +++ ++++-...+.|..+|+...... ......+.+.
T Consensus 245 ~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g 320 (433)
T 4hw6_A 245 TRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNRETGK--LAVPYIVCGQHS 320 (433)
T ss_dssp CBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEBCTTTCC--BCCCEEEEECTT
T ss_pred EECCCCEEEEEECCCCeEE-EEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCCcc--cCcEEEEEecCC
Confidence 7777889999998766520 11111 1222335799999 777 5566666789999887631100 0001112111
Q ss_pred -------------CCCEEEEEE---------cCCCCCEEEEEeCCCcEEEEEC
Q 010997 372 -------------SAAVLCVQW---------SPDKSSVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 372 -------------~~~i~~l~~---------sp~~~~llas~~~dg~i~iwd~ 402 (496)
-.....+++ .+++. |+++-...+.|+.++.
T Consensus 321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP 372 (433)
T ss_dssp CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT
T ss_pred CCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC
Confidence 123677999 56665 6767667788999885
No 272
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.98 E-value=0.006 Score=63.61 Aligned_cols=210 Identities=9% Similarity=-0.014 Sum_probs=128.2
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEe
Q 010997 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSG 214 (496)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg 214 (496)
++.....+..|+|.+.++.++.+-...+.|+.+++...... ......+..... ...+|++.+.++ ++++-
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~--------~~~~~vi~~~l~-~P~GLAvD~~~~~LY~tD 489 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTD 489 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CCCEEEEETTTTEEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC--------cceeEEEecCCC-CcceeeeeecCCcEEEEe
Confidence 34455677889999867777777777788999988753110 011222222222 346888887764 55565
Q ss_pred cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (496)
Q Consensus 215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (496)
...+.|.+.+++..... ..+........+|++.|.++.++
T Consensus 490 ~~~~~I~v~~ldG~~~~----------------------------------------~l~~~~l~~P~gIaVDp~~g~LY 529 (791)
T 3m0c_C 490 SVLGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMY 529 (791)
T ss_dssp TTTTEEEEEETTSSSEE----------------------------------------EEEECTTCCEEEEEEETTTTEEE
T ss_pred cCCCeEEEEeCCCCeEE----------------------------------------EEEeCCCCCcceEEEecCCCCEE
Confidence 66789999888642210 11222334578999999865666
Q ss_pred EEEcCC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-cc--
Q 010997 295 CSVGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EG-- 370 (496)
Q Consensus 295 ~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~-- 370 (496)
++-... +.|...++.... ........-...+.|++++..+.++++-...+.|..+|+.. .....+ ..
T Consensus 530 wtD~g~~~~I~~~~~dG~~--~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-------~~~~~v~~~~~ 600 (791)
T 3m0c_C 530 WTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEK 600 (791)
T ss_dssp EEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTT
T ss_pred EecCCCCCeEEEEecCCCc--eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-------CceEEEecCCC
Confidence 665333 789988886544 22233333467899999984555666656677899999874 333333 21
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.-.....|++. +.+|+++-...+.|...|...+
T Consensus 601 ~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 601 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence 22345577764 3457877777788888886553
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.93 E-value=0.00073 Score=69.63 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=46.1
Q ss_pred eeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CC---
Q 010997 143 VNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KD--- 217 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~D--- 217 (496)
...+++.+ ++++++.|+. +..+.+||..+..-. ....+ +....-.+++..++++.++.|+ .+
T Consensus 245 ~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~----------~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~~ 311 (656)
T 1k3i_A 245 CPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWI----------PGPDM--QVARGYQSSATMSDGRVFTIGGSWSGGV 311 (656)
T ss_dssp SCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEE----------ECCCC--SSCCSSCEEEECTTSCEEEECCCCCSSS
T ss_pred cccccCCC-CCCEEEeCCCCCCceEEecCcCCcee----------ECCCC--CccccccceEEecCCeEEEEeCcccCCc
Confidence 33466667 7888888884 558999998765211 11111 1111123456667889888888 44
Q ss_pred --CcEEEEecCCcc
Q 010997 218 --KSVVLWSIQDHI 229 (496)
Q Consensus 218 --g~i~iwd~~~~~ 229 (496)
..+.+||..+..
T Consensus 312 ~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 312 FEKNGEVYSPSSKT 325 (656)
T ss_dssp CCCCEEEEETTTTE
T ss_pred ccccceEeCCCCCc
Confidence 578999987643
No 274
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.91 E-value=0.017 Score=60.82 Aligned_cols=250 Identities=8% Similarity=0.061 Sum_probs=142.8
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i 220 (496)
..|.++...+ ++.+.+ |+.+ -|.+||..+........... . ..+-....|.++...++|. |-.|+.++-|
T Consensus 263 ~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~--~----~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl 332 (795)
T 4a2l_A 263 NYIRSLAMDS-QNRLWI-GTFN-DLNIYHEGTDSFASYSSNPV--E----NGSLSQRSVRSIFMDSQGG-MWLGTYFGGL 332 (795)
T ss_dssp SBEEEEEECT-TSCEEE-EESS-CEEEEETTTTEEEEECCCTT--S----TTSCSSSCEEEEEECTTSC-EEEEESSSCE
T ss_pred CeEEEEEEcC-CCCEEE-EeCC-hhheEcCCCCeEEEEecCCC--C----CCCCCCCcEEEEEEeCCcC-EEEEECCCCe
Confidence 5689998877 555443 4455 58889976652110000000 0 0011123588998888776 5556667788
Q ss_pred EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (496)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (496)
..++..+......... ... .. -....|.++...+++ .|..|+.+
T Consensus 333 ~~~~~~~~~~~~~~~~-----------------------------~~~---~~--l~~~~V~~i~~d~~g--~lWiGt~~ 376 (795)
T 4a2l_A 333 NYYHPIRNRFKNIRNI-----------------------------PYK---NS--LSDNVVSCIVEDKDK--NLWIGTND 376 (795)
T ss_dssp EEECGGGGSSEEECCC-----------------------------TTS---SS--CSCSSEEEEEECTTS--CEEEEESS
T ss_pred EEeCCCcccceEEcCC-----------------------------CCC---CC--CCCCeeEEEEECCCC--CEEEEECC
Confidence 8888764322110000 000 00 023468888888777 36667778
Q ss_pred CeEEEEEccCCCccceeeec--------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---
Q 010997 301 SCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--- 369 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~--------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~--- 369 (496)
+-|..||..++. ...... .....|.++...+ ++.+|..|+.++-|.+||..+ +. +..+.
T Consensus 377 ~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~------~~-~~~~~~~~ 446 (795)
T 4a2l_A 377 GGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNS------GQ-VENFNQRN 446 (795)
T ss_dssp SCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTT------CC-EEEECTTT
T ss_pred CCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCC------Cc-EEEeecCC
Confidence 789999987665 221110 1245789999887 677566777777799999876 22 33332
Q ss_pred --cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 370 --~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
.....|.++...+++. |. .|+.+ -+.+||.... ......... .+ ..-....|.++...+++...++
T Consensus 447 ~~l~~~~v~~i~~d~~g~-lw-igt~~-Gl~~~~~~~~-~~~~~~~~~--~~------~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGN-LW-LGTLS-ALVRFNPEQR-SFTTIEKEK--DG------TPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp SCCSCSCEEEEEECSSSC-EE-EEESS-CEEEEETTTT-EEEECCBCT--TC------CBCCCCCEEEEEECTTCCEEEE
T ss_pred CCcCCCeeEEEEECCCCC-EE-EEecC-ceeEEeCCCC-eEEEccccc--cc------cccCCceEEEEEECCCCCEEEE
Confidence 2345799999998887 55 34444 5888997653 110000000 00 0112356888888887765553
Q ss_pred EecCCCCCCCCCCeEEEeecC
Q 010997 448 SVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 448 s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
+ . +-|..|+..
T Consensus 515 t-~---------~Gl~~~~~~ 525 (795)
T 4a2l_A 515 G-E---------EGLSVFKQE 525 (795)
T ss_dssp E-S---------SCEEEEEEE
T ss_pred e-C---------CceEEEeCC
Confidence 3 1 247777765
No 275
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.85 E-value=0.0003 Score=72.77 Aligned_cols=205 Identities=8% Similarity=-0.033 Sum_probs=118.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDK 218 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg 218 (496)
...+..|+|.+..+.++++-...+.|+.+++....... .....+..... ...+|++.+.+ +++++-...+
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~--------~~~~~i~~~~~-~P~glavD~~~g~LY~tD~~~~ 475 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLG 475 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C--------CCCCBCCSCC---CCCEECCCSSSBCEECCTTTS
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc--------ceEEEEeCCCC-CcceEEEEeeCCcEEEEeccCC
Confidence 34567888988566666665667899999987521000 00111111111 23577777554 4455555678
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
.|.+.++...... ..+.........|++.|.+..++++-.
T Consensus 476 ~I~v~d~dg~~~~----------------------------------------~l~~~~~~~P~giavDp~~g~ly~td~ 515 (699)
T 1n7d_A 476 TVSVADTKGVKRK----------------------------------------TLFREQGSKPRAIVVDPVHGFMYWTDW 515 (699)
T ss_dssp CEEEEBSSSCCEE----------------------------------------EECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred eEEEEecCCCceE----------------------------------------EEEeCCCCCcceEEEccCCCcEEEccc
Confidence 8999887643211 011111233567888887655555543
Q ss_pred CC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCCCC
Q 010997 299 DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHSAA 374 (496)
Q Consensus 299 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~ 374 (496)
.. +.|..+++..... .......-...+.|+|+|..+.++++-+..+.|..+|+.. .....+. ..-..
T Consensus 516 ~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~~~ 586 (699)
T 1n7d_A 516 GTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAH 586 (699)
T ss_dssp SSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-------SCCEEECCCSSSCSS
T ss_pred CCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-------CceEEEEecCCcCCC
Confidence 33 7788877754331 1111122345678999985566777777788999999864 2222222 11223
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
...|++..+ .|+++....+.|..+|..+
T Consensus 587 P~glavd~~--~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 587 PFSLAVFED--KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CCCCEEETT--EEEEECSTTTCEEEEETTT
T ss_pred ceEeEEECC--EEEEEeCCCCeEEEEEccC
Confidence 345566443 5777877788999999765
No 276
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.85 E-value=0.0097 Score=60.56 Aligned_cols=183 Identities=9% Similarity=-0.013 Sum_probs=117.3
Q ss_pred CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc-eEEecCCCcEEEEecCCccccccCCcccc
Q 010997 161 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATA 239 (496)
Q Consensus 161 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~-l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~ 239 (496)
....|+..++.+.... ....+.+-. ...+|+|++.+.. +++-..++.|..++++.....
T Consensus 13 ~~~~I~~i~l~~~~~~----------~~~~~~~~~--~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-------- 72 (628)
T 4a0p_A 13 RRADIRRISLETNNNN----------VAIPLTGVK--EASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-------- 72 (628)
T ss_dssp ETTEEEEEESSCTTCE----------EECCCCSCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------
T ss_pred eCCcEEEEECCCCCcc----------eEEEcCCCC--ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--------
Confidence 4458999998765210 011112222 3579999987554 445566788988887642110
Q ss_pred ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee
Q 010997 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE 319 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 319 (496)
..+.........|++.+.+.+++++-...+.|.+.++.... .....
T Consensus 73 --------------------------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~ 118 (628)
T 4a0p_A 73 --------------------------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLV 118 (628)
T ss_dssp --------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEE
T ss_pred --------------------------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEE
Confidence 11111223467888887766777887888999999987554 22222
Q ss_pred ccCCCCeEEEEecCCCCcEEEEE-cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 320 KAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 320 ~~~~~~v~~i~~sp~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
...-.....|+++|..+.++.+- +..+.|...++.. .....+...-.....|++++++..|+.+-...+.|.
T Consensus 119 ~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-------~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~ 191 (628)
T 4a0p_A 119 WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-------SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIE 191 (628)
T ss_dssp CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-------CceEEEECCCCCcceEEEccccCEEEEEECCCCEEE
Confidence 23445678999999455555554 2356788888764 333333334556889999998887887777788999
Q ss_pred EEECCC
Q 010997 399 IWDYEK 404 (496)
Q Consensus 399 iwd~~~ 404 (496)
.+|+..
T Consensus 192 ~~d~dG 197 (628)
T 4a0p_A 192 SSNMLG 197 (628)
T ss_dssp EEETTS
T ss_pred EEcCCC
Confidence 999876
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.82 E-value=0.0017 Score=65.44 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=39.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEecC------CCcEEEEe
Q 010997 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGK------DKSVVLWS 224 (496)
Q Consensus 153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~~------Dg~i~iwd 224 (496)
+..|+.++.|+.|..+|..++.. ...........-..+.-+| .+..++.++. ++.|..+|
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D 182 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFD 182 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEE
Confidence 34677778899999999988832 2222211000001111122 1334555544 79999999
Q ss_pred cCCccccccC
Q 010997 225 IQDHITSSAT 234 (496)
Q Consensus 225 ~~~~~~~~~~ 234 (496)
..+++.....
T Consensus 183 ~~tG~~~W~~ 192 (571)
T 2ad6_A 183 LKTGELKWRA 192 (571)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9988765543
No 278
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.78 E-value=0.014 Score=61.42 Aligned_cols=245 Identities=7% Similarity=0.050 Sum_probs=136.0
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (496)
Q Consensus 143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i 222 (496)
|.++...+ ++.+.+ |+.++-|..||..+..... ... ..+. ..|.++...+++.+.+ |+.++-|.+
T Consensus 175 i~~i~~d~-~g~lwi-gt~~~Gl~~~~~~~~~~~~----------~~~-~~~~-~~i~~i~~d~~g~lwi-gt~~~Gl~~ 239 (795)
T 4a2l_A 175 IASTLYRQ-GDQIYI-GTSTDGLYTYSITQKTFEK----------VIP-ILGT-KQIQAILQQSPTRIWV-ATEGAGLFL 239 (795)
T ss_dssp CEEEEEEE-TTEEEE-EESSSCEEEEETTTCCEEE----------CC-----C-CCEEEEEEEETTEEEE-EEBSSCEEE
T ss_pred eEEEEECC-CCCEEE-EECCCCEEEEeCCCCeEEE----------ecC-CCCC-CeeEEEEEcCCCCEEE-EECCCCeEE
Confidence 78887777 665555 5555568899977652110 000 0112 2578888877776554 444444888
Q ss_pred EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe
Q 010997 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 302 (496)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (496)
||..+.......... ... . .-....|.++...+++ . +..|+.+ -
T Consensus 240 ~~~~~~~~~~~~~~~----------------------------~~~---~--~l~~~~i~~i~~d~~g-~-lWigt~~-G 283 (795)
T 4a2l_A 240 INPKTKEIKNYLHSP----------------------------SNP---K--SISSNYIRSLAMDSQN-R-LWIGTFN-D 283 (795)
T ss_dssp EETTTTEEEEECCCT----------------------------TCT---T--SCSCSBEEEEEECTTS-C-EEEEESS-C
T ss_pred EeCCCCeEEEeecCC----------------------------CCc---c--ccCCCeEEEEEEcCCC-C-EEEEeCC-h
Confidence 887654321100000 000 0 0123568899888877 3 4445555 5
Q ss_pred EEEEEccCCCccceeee-------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc-----
Q 010997 303 LILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----- 370 (496)
Q Consensus 303 i~iwd~~~~~~~~~~~~-------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----- 370 (496)
|.+||..+.. ..... ......|.++..++ ++. |..|+.++-|..||... .....+..
T Consensus 284 l~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~-------~~~~~~~~~~~~~ 352 (795)
T 4a2l_A 284 LNIYHEGTDS--FASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIR-------NRFKNIRNIPYKN 352 (795)
T ss_dssp EEEEETTTTE--EEEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGG-------GSSEEECCCTTSS
T ss_pred hheEcCCCCe--EEEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCc-------ccceEEcCCCCCC
Confidence 8889977654 21111 11235799999988 555 55677777799998765 22222221
Q ss_pred --CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-cCCCCCcceEEecCCCC-cEE
Q 010997 371 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHRDKVVDFHWNASDP-WTV 446 (496)
Q Consensus 371 --h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~-~l~ 446 (496)
....|.++...++|. |. .|+.++-|..||.....-....... .... .-....|.++...+++. ..+
T Consensus 353 ~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~v~~i~~d~~g~~lWi 422 (795)
T 4a2l_A 353 SLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQRFTSYTLQE--------DESARGIGSNNIKAVYVDEKKSLVYI 422 (795)
T ss_dssp SCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCCEEEECCC--------------CCSCSCEEEEEEETTTTEEEE
T ss_pred CCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCcEEEEecCC--------CCcccCCCCccEEEEEEcCCCCEEEE
Confidence 245699999998887 54 6777777999997653110000000 0000 01134688888887666 333
Q ss_pred EEecCCCCCCCCCCeEEEeecC
Q 010997 447 VSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 447 ~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
++ .++-|.+|+..
T Consensus 423 gt---------~~~Gl~~~d~~ 435 (795)
T 4a2l_A 423 GT---------HAGGLSILHRN 435 (795)
T ss_dssp EE---------TTTEEEEEETT
T ss_pred Ee---------CcCceeEEeCC
Confidence 22 12557778766
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.78 E-value=0.015 Score=51.39 Aligned_cols=206 Identities=11% Similarity=0.069 Sum_probs=122.7
Q ss_pred ecCCCCcceeeeecCCCCceE-EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997 192 TGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (496)
Q Consensus 192 ~~h~~~~v~~l~~~p~~~~l~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
.+-.. .+.+++|+|++..|+ +...++.|...|.. +...
T Consensus 23 ~g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~--------------------------------------- 61 (255)
T 3qqz_A 23 AGITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI--------------------------------------- 61 (255)
T ss_dssp TTCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE---------------------------------------
T ss_pred CCccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE---------------------------------------
Confidence 34444 478999999866444 46668888888876 2211
Q ss_pred eeeee-cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-ceeee------ccCCCCeEEEEecCCCCcEEEEE
Q 010997 271 RGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVE------KAHDADLHCVDWNPLDDNLILTG 342 (496)
Q Consensus 271 ~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~------~~~~~~v~~i~~sp~~~~~l~sg 342 (496)
..+. +-......|++.+++ .++++.-.++.+.++++...... ..... .........|+|+| .++.|.++
T Consensus 62 -~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va 138 (255)
T 3qqz_A 62 -RTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFF 138 (255)
T ss_dssp -EEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEE
T ss_pred -EEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEE
Confidence 1111 112457888998877 56677667788999988665420 01111 12345678999999 56555555
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCceEec-------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC
Q 010997 343 SADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415 (496)
Q Consensus 343 s~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~ 415 (496)
.......||.+..... ...+..+. .+...+.+++++|....+++.+...+.+.++|.... .
T Consensus 139 ~E~~p~~i~~~~g~~~---~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~------- 206 (255)
T 3qqz_A 139 KEKNPIEVYKVNGLLS---SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--V------- 206 (255)
T ss_dssp EESSSEEEEEEESTTC---SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E-------
T ss_pred ECcCCceEEEEccccc---CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--E-------
Confidence 5544455555442100 11222221 123457899999988888888888899999997752 1
Q ss_pred CCCCCeeEEEec-CC------CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997 416 TNYPAGLFFQHA-GH------RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467 (496)
Q Consensus 416 ~~~~~~~~~~~~-~h------~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~ 467 (496)
.-...+. +. -..--.|+|.++|. ++++ |+- +.++++..
T Consensus 207 -----~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~-------n~~y~f~~ 251 (255)
T 3qqz_A 207 -----IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEP-------NRFYRFTP 251 (255)
T ss_dssp -----EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETT-------TEEEEEEC
T ss_pred -----EEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCC-------ceEEEEEe
Confidence 1122222 21 12456899999886 5544 333 66666644
No 280
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.75 E-value=0.0015 Score=67.37 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+|.|..||+.+ ++.+-++..+ .++....+...+. ++..++.|+.+++||..+.
T Consensus 437 ~g~l~A~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 437 SGALLAWDPVK------QKAAWKVPYP-THWNGGTLSTAGN-LVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp EEEEEEEETTT------TEEEEEEEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTC
T ss_pred cceEEEEeCCC------CcEEEEccCC-CCCcCceeEeCCC-EEEEECCcccchhhhhhcC
Confidence 47899999988 6666665533 2233333444555 4457889999999999885
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.025 Score=55.14 Aligned_cols=163 Identities=10% Similarity=0.054 Sum_probs=94.8
Q ss_pred eeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC--CCcceeeee-------cCCCCceE
Q 010997 143 VNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--DNAEFALAM-------CPTEPYVL 212 (496)
Q Consensus 143 V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~--~~~v~~l~~-------~p~~~~l~ 212 (496)
...|+|.|. +++++++....+.|++.|+.... ....+..-. -.....|+| ++++++|+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~------------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly 208 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM------------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMI 208 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE------------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE------------EEEEEccCccccCCCcEEEEeecccccCCCCCEEE
Confidence 568889883 56666666655678888987751 111111111 113578999 99998666
Q ss_pred EecCCC-c------EEEEecCC-ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEE
Q 010997 213 SGGKDK-S------VVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (496)
Q Consensus 213 sg~~Dg-~------i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (496)
.+...+ . |.+.+... +... ..... ..+.. -.....+
T Consensus 209 vad~~~~~~~~~~~V~~i~r~~~G~~~--------------------------------~~~~~---~~v~~-~~~p~gi 252 (496)
T 3kya_A 209 VAIDYDGKGDESPSVYIIKRNADGTFD--------------------------------DRSDI---QLIAA-YKQCNGA 252 (496)
T ss_dssp EEECCCTTGGGEEEEEEEECCTTSCCS--------------------------------TTSCE---EEEEE-ESCCCCE
T ss_pred EEeCCCCCcccCceEEEEecCCCCcee--------------------------------ecccc---eeecc-CCCceEE
Confidence 555443 2 44554321 0000 00000 11111 1234678
Q ss_pred EEccCCCceEEEEcCCCeEEEEEcc-------CCCc-----cc----e-eee-ccCCCCeEEEEecCCCCcE-EEEEcCC
Q 010997 285 TFCPSSAQEFCSVGDDSCLILWDAR-------VGTS-----PV----I-KVE-KAHDADLHCVDWNPLDDNL-ILTGSAD 345 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~-----~~----~-~~~-~~~~~~v~~i~~sp~~~~~-l~sgs~d 345 (496)
+++|++..++++-..++.|..+|+. ++.. +. . ... .........|+|+| ++++ +++-+..
T Consensus 253 avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~ 331 (496)
T 3kya_A 253 TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINN 331 (496)
T ss_dssp EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETTT
T ss_pred EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCCC
Confidence 8899665788888889999999997 4442 00 0 111 12234568999999 8884 5555667
Q ss_pred CcEEEEeCC
Q 010997 346 NSVRMFDRR 354 (496)
Q Consensus 346 g~i~iwd~~ 354 (496)
..|+.+|..
T Consensus 332 h~I~kid~d 340 (496)
T 3kya_A 332 HYFMRSDYD 340 (496)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEecC
Confidence 889987654
No 282
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.65 E-value=0.0078 Score=60.77 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=36.6
Q ss_pred CeEEEEEccCCCccceeeec--cCCC-------CeEEEEec-CCCC---cEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997 301 SCLILWDARVGTSPVIKVEK--AHDA-------DLHCVDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~--~~~~-------~v~~i~~s-p~~~---~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 367 (496)
+.|..+|.++++ ..-.++ .|.. ...-+... . ++ ..++.++.+|.+.++|.++ ++.+..
T Consensus 278 ~sv~Ald~~TG~--~~W~~q~~~~d~wd~d~~~~p~l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw~ 348 (599)
T 1w6s_A 278 MTIFGRDADTGE--AKFGYQKTPHDEWDYAGVNVMMLSEQKDK-DGKARKLLTHPDRNGIVYTLDRTD------GALVSA 348 (599)
T ss_dssp SEEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEEEEEECT-TSCEEEEEEEECTTSEEEEEETTT------CCEEEE
T ss_pred ceEEEEeCCCCc--eeeEeecCCCccccccCCCccEEEecccc-CCcEEEEEEEECCCcEEEEEECCC------CCEeec
Confidence 489999999988 333322 2211 11112222 3 45 5778899999999999988 555544
Q ss_pred e
Q 010997 368 F 368 (496)
Q Consensus 368 ~ 368 (496)
.
T Consensus 349 ~ 349 (599)
T 1w6s_A 349 N 349 (599)
T ss_dssp E
T ss_pred c
Confidence 3
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.002 Score=62.54 Aligned_cols=157 Identities=11% Similarity=0.121 Sum_probs=98.2
Q ss_pred ceeeeecC-CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997 199 EFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (496)
Q Consensus 199 v~~l~~~p-~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (496)
...|+++| ++..|+.+...+.|+.+|+..... ..+...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-----------------------------------------~~~~~~ 177 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-----------------------------------------STVYSG 177 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-----------------------------------------EEEECC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-----------------------------------------EEEecC
Confidence 36889998 455566555557888888865322 222223
Q ss_pred CCceeEEEEccCCCceEEEEcCCC----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~ 353 (496)
......|+|++++..++++...++ .+..++. .+.......+. .......++++|.++.++++-..++.|..+|.
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 456789999999843556554333 3333443 33311112221 23456788899956777777777889999998
Q ss_pred CCCCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 354 RNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 354 ~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.. ........ ........++|+|++.+|+++-...+.|..++...
T Consensus 256 ~~------~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TT------QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TT------TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CC------CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 75 22211111 11234679999999997777777788999988764
No 284
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.56 E-value=0.018 Score=58.49 Aligned_cols=183 Identities=5% Similarity=-0.016 Sum_probs=111.4
Q ss_pred CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-EecCCCcEEEEecCCccccccCCccccc
Q 010997 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAK 240 (496)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~~ 240 (496)
...|++.++..... .......+-. ...+|+|++.+..|+ +=...+.|..++++....
T Consensus 17 ~~~I~~i~~~~~~~----------~~~~~~~~~~--~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---------- 74 (619)
T 3s94_A 17 RRDLRLVDATNGKE----------NATIVVGGLE--DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------- 74 (619)
T ss_dssp SSBEEEECCC-------------------CBCCS--CEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred cccEEEEeCCCCcc----------eEEEEEcCCC--ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----------
Confidence 45788888875410 0111222222 246899998766555 444567888888764210
Q ss_pred cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (496)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (496)
....+.........|++.+.+.+++++-...+.|.+.++.... ......
T Consensus 75 -----------------------------~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--~~~l~~ 123 (619)
T 3s94_A 75 -----------------------------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFW 123 (619)
T ss_dssp -----------------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEEC
T ss_pred -----------------------------eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--EEEEEe
Confidence 0012222234678999998765788888888999999987654 222222
Q ss_pred cCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 321 AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 321 ~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
..-.....|+++|..+.++.+-- ..+.|...++.- .....+ ...-.....|++++++..|+++-...+.|.
T Consensus 124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-------~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-------SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-------CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 34456789999994455555542 246777777663 333333 223456789999998777887777788899
Q ss_pred EEECCC
Q 010997 399 IWDYEK 404 (496)
Q Consensus 399 iwd~~~ 404 (496)
.+|+..
T Consensus 197 ~~~~dG 202 (619)
T 3s94_A 197 KSNLDG 202 (619)
T ss_dssp EESSSC
T ss_pred EecCCC
Confidence 999875
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.50 E-value=0.018 Score=55.74 Aligned_cols=156 Identities=10% Similarity=0.131 Sum_probs=94.5
Q ss_pred ceeeeecCC--CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997 199 EFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (496)
Q Consensus 199 v~~l~~~p~--~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (496)
..+|+|+|+ +..|+.+...+.|+.+|..++.. ..+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-----------------------------------------~~~~~ 179 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-----------------------------------------DIKTT 179 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-----------------------------------------EEECC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-----------------------------------------EEeec
Confidence 368999984 34455554448899999865432 12222
Q ss_pred CCCceeEEEEccCCCceEEEEcCC---C-eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGDD---S-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd 352 (496)
......++++++++ .++++.... . .+...+...... ..... ........++++|.++.++++-..++.|+.+|
T Consensus 180 ~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d 256 (433)
T 4hw6_A 180 NIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRASGFT-ERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYD 256 (433)
T ss_dssp CCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGGTTC-CEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEEC
T ss_pred CCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCCCee-ccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEE
Confidence 33457899999999 466655422 1 233333322211 01111 22345677888985566666666788999999
Q ss_pred CCCCCCCCCCCCceEe-c-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 353 RRNLTSNGVGSPINKF-E-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 353 ~~~~~~~~~~~~~~~~-~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
..+ +.....+ . +....-..++|+|++.+|+++-...+.|+.+++..
T Consensus 257 ~~~------g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 257 PAT------GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp TTT------CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCC------CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 875 3331222 1 11222357999999987787777788999988763
No 286
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.46 E-value=0.079 Score=55.62 Aligned_cols=246 Identities=7% Similarity=0.018 Sum_probs=137.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
...|.++...+ ++. |-.|+.++-|..|+............... .. ..+-....|.++...++|. |..|+.++-
T Consensus 312 ~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~-~~---~~~l~~~~v~~i~~d~~g~-lWigt~~~G 384 (781)
T 3v9f_A 312 NASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ-MN---ESSLSNKVVSSVCDDGQGK-LWIGTDGGG 384 (781)
T ss_dssp SSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----C-CC---SSCCSSSCEEEEEECTTSC-EEEEEBSSC
T ss_pred CCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccc-cc---cCCCCCcceEEEEEcCCCC-EEEEeCCCc
Confidence 35688888777 554 44566667788888765521110000000 00 0011223588888877775 555665667
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
|..+|..+......... .......|.++...+++ . |..|+.
T Consensus 385 l~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~v~~i~~d~~g-~-lWigt~ 425 (781)
T 3v9f_A 385 INVFENGKRVAIYNKEN-------------------------------------RELLSNSVLCSLKDSEG-N-LWFGTY 425 (781)
T ss_dssp EEEEETTEEEEECC------------------------------------------CCCSBEEEEEECTTS-C-EEEEET
T ss_pred EEEEECCCCeEEEccCC-------------------------------------CCCCCcceEEEEECCCC-C-EEEEec
Confidence 88888765322110000 01123568888887776 3 555776
Q ss_pred CCeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC-----C
Q 010997 300 DSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-----S 372 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----~ 372 (496)
++-|..+|..+++ ..... ......|.++...+ ++.+ ..|+. +-|..||..+ +......... .
T Consensus 426 ~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~-~g~l-wigt~-~Gl~~~~~~~------~~~~~~~~~~~~~~~~ 494 (781)
T 3v9f_A 426 LGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDK-NKKI-WIGTH-AGVFVIDLAS------KKVIHHYDTSNSQLLE 494 (781)
T ss_dssp TEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECT-TSEE-EEEET-TEEEEEESSS------SSCCEEECTTTSSCSC
T ss_pred cCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECC-CCCE-EEEEC-CceEEEeCCC------CeEEecccCccccccc
Confidence 6778999887654 21111 12346789999887 5554 44555 4588899876 2222211111 3
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec---C-CCCCcceEEecCCCCcEEEE
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA---G-HRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~-h~~~V~~~~~~p~~~~l~~s 448 (496)
..|.++...++|. |. .|+.++-|..||.... . +..+. + ....|.++...+++...+++
T Consensus 495 ~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~-~---------------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 495 NFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQ-L---------------VRKFNQYEGFCSNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp SCEEEEEECTTCC-EE-EEESSSCEEEECTTCC-E---------------EEEECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred ceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCC-e---------------EEEccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence 6799999999887 54 4554444777887652 1 11111 1 13467888888777644432
Q ss_pred ecCCCCCCCCCCeEEEeecCC
Q 010997 449 VSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 449 ~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
. +|.|..|+...
T Consensus 557 -~--------~Glv~~~d~~~ 568 (781)
T 3v9f_A 557 -G--------EGLVCFPSARN 568 (781)
T ss_dssp -T--------TEEEEESCTTT
T ss_pred -C--------CCceEEECCCC
Confidence 2 24447777653
No 287
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.44 E-value=0.052 Score=55.09 Aligned_cols=203 Identities=6% Similarity=-0.035 Sum_probs=120.8
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK 218 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg 218 (496)
-+.+..++|.+.++.++.+-...+.|..+++.... .....+..... ...+|++.+.+. ++++-...+
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-----------~~~~v~~~~~~-~P~GlAvD~~~~~ly~~d~~~~ 106 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-----------SVQNVVVSGLL-SPDGLACDWLGEKLYWTDSETN 106 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CEEEEEEETTTTEEEEEETTTT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-----------ceEEEEeCCCC-CcCeEEEEecCCEEEEEeCCCC
Confidence 34578899999677677676667889999887541 01112222212 357899988655 555556678
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE-
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV- 297 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~- 297 (496)
.|.+.+++..... ..+........+|++.|.++.++++-
T Consensus 107 ~I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 107 RIEVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp EEEEEETTSCSCE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEE----------------------------------------EEEeCCCCCCceEEEecCCCeEEEecc
Confidence 9999998643211 11112334567899998764666664
Q ss_pred cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEE
Q 010997 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL 376 (496)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~ 376 (496)
+..+.|...++.... ........-...+.|++++..+.++++-+..+.|..+|+... ....+ .+......
T Consensus 147 g~~~~I~r~~~dG~~--~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-------~~~~~~~~~~~~P~ 217 (619)
T 3s94_A 147 GEVPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-------NRQAVVKGSLPHPF 217 (619)
T ss_dssp SSSCEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-------EEC---------CC
T ss_pred CCCCEEEEEECCCCc--eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-------ccEEEEeCCCCCce
Confidence 234677777775443 222222334567899999845566666666788999998752 11111 11122234
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.|++..+ .++.+-...+.|...|..++
T Consensus 218 gi~~~~~--~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 218 ALTLFED--ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp CEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred EEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence 6677655 57777777888999998764
No 288
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.1 Score=54.74 Aligned_cols=246 Identities=9% Similarity=0.007 Sum_probs=132.4
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCC---CceEEecCCCCcceeeeecCCCCceEEecC
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR---PDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~ 216 (496)
...|.++...+ ++.+ -.|+..+-|.++|..+......... ... ....-.+-....|.++...++|. |-.|+.
T Consensus 257 ~~~i~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~ 331 (781)
T 3v9f_A 257 SSYIFSIKQLK-DNKL-WIATELNGIMILDLQQNQFLLPEQI--RFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTW 331 (781)
T ss_dssp CCCEEEEEECT-TSEE-EEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEB
T ss_pred CceEEEEEECC-CCCE-EEEeCCCCeEEECCCCCeeeeeecc--ccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEec
Confidence 35688888776 5554 4556645688899876521110000 000 00000011223588888888776 556666
Q ss_pred CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (496)
Q Consensus 217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (496)
++-|..++............. ... ....-....|.++...+++ .|..
T Consensus 332 ~~Gl~~~~~~~~~~~~~~~~~-----------------------------~~~--~~~~l~~~~v~~i~~d~~g--~lWi 378 (781)
T 3v9f_A 332 GGGINFISNAPPTFHTWSYSP-----------------------------TQM--NESSLSNKVVSSVCDDGQG--KLWI 378 (781)
T ss_dssp SSCEEEECSSCCSCEEEC---------------------------------CC--CSSCCSSSCEEEEEECTTS--CEEE
T ss_pred CCeEEEeCCCCCcceeeccCc-----------------------------ccc--ccCCCCCcceEEEEEcCCC--CEEE
Confidence 777888887643221100000 000 0000123468888887776 3666
Q ss_pred EcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCC
Q 010997 297 VGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHS 372 (496)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~ 372 (496)
|+.++-|..||..+........ .......|.++...+ ++.+. .|+.++-|..+|..+ + .+..+. ...
T Consensus 379 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~------~-~~~~~~~~~~~~ 449 (781)
T 3v9f_A 379 GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRL------K-KFQIIELEKNEL 449 (781)
T ss_dssp EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEEEEEECSSS------C-EEEECCSTTTCC
T ss_pred EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCCEEEEcCCC------C-cEEEeccCCCCC
Confidence 6766778889876543111100 012346789999887 55544 466666788998875 2 233332 234
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec---CCCCCcceEEecCCCCcEEEE
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA---GHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~~~~~p~~~~l~~s 448 (496)
..|.++...+++. |. .|+. +-|..||.....- ....... .....|.++...+++...+++
T Consensus 450 ~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 450 LDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKV-------------IHHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp CCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSC-------------CEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred CeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeE-------------EecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 6799999988886 44 4444 4588898765311 0111000 113568888888877655543
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.41 E-value=0.019 Score=52.92 Aligned_cols=123 Identities=11% Similarity=0.167 Sum_probs=78.7
Q ss_pred CceeEEEE--ccCCC-ceEEEEcCCCeEEEEEccCC---C--ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997 279 DTVEDVTF--CPSSA-QEFCSVGDDSCLILWDARVG---T--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 350 (496)
Q Consensus 279 ~~v~~l~~--~~~~~-~~l~s~~~dg~i~iwd~~~~---~--~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i 350 (496)
..+..+++ +|... .+++....+|.+..|++... . ...+..+ ...+.+-.+...+ ....|..+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADD-EYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcC-CCCeEEEecccceEEE
Confidence 45667777 66442 36777888899999998532 1 1133444 3456788888888 6778888888866666
Q ss_pred EeCCCCCCCCCCCCceEec-cC-CCCEEEEEE--cCCCC-CEEEEEeCCCcEEEEECCC
Q 010997 351 FDRRNLTSNGVGSPINKFE-GH-SAAVLCVQW--SPDKS-SVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~-~h-~~~i~~l~~--sp~~~-~llas~~~dg~i~iwd~~~ 404 (496)
+|.+-... .....+..+. ++ ...+..|++ .+++. +||+|+-.++...+||...
T Consensus 206 ~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 206 FSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 66543110 0123444432 22 246888888 45555 6887776688999999963
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.41 E-value=0.0039 Score=56.97 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=100.1
Q ss_pred eeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 200 FALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 200 ~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
.+++|++... ++++.-..++|..||...+.......+ . .. .. ....
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~------~----------------------~s----~~-g~~~ 62 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID------G----------------------AS----SN-GDGE 62 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT------T----------------------TC----CS-SCCS
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC------C----------------------cc----cc-CCCc
Confidence 5789987555 445555799999999864321110000 0 00 00 0011
Q ss_pred CceeEEEE---ccCCCceEEEEc-------------CCCeEEEEEcc---CCCccceeeecc-----------CCCCeEE
Q 010997 279 DTVEDVTF---CPSSAQEFCSVG-------------DDSCLILWDAR---VGTSPVIKVEKA-----------HDADLHC 328 (496)
Q Consensus 279 ~~v~~l~~---~~~~~~~l~s~~-------------~dg~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~ 328 (496)
..+..|.| .|++ .++++.. .+..|..||+. +++......+.. -....+.
T Consensus 63 ~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nD 141 (334)
T 2p9w_A 63 QQMSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQ 141 (334)
T ss_dssp EEEEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEE
T ss_pred ceeeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCce
Confidence 23578899 5775 6666433 26789999998 665221122111 1135889
Q ss_pred EEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEec------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997 329 VDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 329 i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~~------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd 401 (496)
++..+ +++..++++.- +.|..++... +.+..+. ......+.|+++|++..|++..+ .|.+..+|
T Consensus 142 vavD~-~GnaYVt~s~~~~~I~rV~pdG-------~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD 212 (334)
T 2p9w_A 142 SAQDR-DGNSYVAFALGMPAIARVSADG-------KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFD 212 (334)
T ss_dssp EEECT-TSCEEEEEEESSCEEEEECTTS-------CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEE
T ss_pred eEECC-CCCEEEeCCCCCCeEEEEeCCC-------CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEc
Confidence 99999 89999988888 8877777663 3233221 11234679999999987765555 99999999
Q ss_pred CCC
Q 010997 402 YEK 404 (496)
Q Consensus 402 ~~~ 404 (496)
+..
T Consensus 213 ~~~ 215 (334)
T 2p9w_A 213 VSK 215 (334)
T ss_dssp CSS
T ss_pred CCC
Confidence 884
No 291
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.39 E-value=0.017 Score=58.06 Aligned_cols=54 Identities=19% Similarity=0.112 Sum_probs=35.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.+|.|..||+.+ ++.+.++... ..+.+..+...+..++ .++.|+.|+.||..++
T Consensus 442 ~~g~l~a~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v~-~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 442 EMGQIRAFDLTT------GKAKWTKWEK-FAAWGGTLYTKGGLVW-YATLDGYLKALDNKDG 495 (571)
T ss_dssp CCEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEEE-EECTTSEEEEEETTTC
T ss_pred CCCeEEEEECCC------CCEEEEecCC-CCccceeEEECCCEEE-EEcCCCeEEEEECCCC
Confidence 357899999988 6666665432 2222222233344454 6888999999999885
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.38 E-value=0.078 Score=49.06 Aligned_cols=116 Identities=14% Similarity=0.201 Sum_probs=62.3
Q ss_pred CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (496)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~ 356 (496)
....+..+.+.+++ .+++.+...+..+-.|-..... ..........+..+++.+ ++.+++. +.+|.+.+.+....
T Consensus 161 ~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW--~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 161 AIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAW--EPHNRTTSRRLHNMGFTP-DGRLWMI-VNGGKIAFSDPDNS 235 (327)
T ss_dssp CCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSC--EEEECCSSSCEEEEEECT-TSCEEEE-ETTTEEEEEETTEE
T ss_pred CCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCce--eECCCCCCCccceeEECC-CCCEEEE-eCCceEEEecCCCC
Confidence 34467889999877 5666554444334444211111 111224556788999988 6766554 46788877642210
Q ss_pred CCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997 357 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (496)
Q Consensus 357 ~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~ 403 (496)
. ....+..- ..+...+.++.+.+++. +++++. ++.| ++...
T Consensus 236 ~---tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~D 277 (327)
T 2xbg_A 236 E---NWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQD 277 (327)
T ss_dssp E---EECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESS
T ss_pred C---eeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCC
Confidence 0 01111110 01234588999998776 665554 6766 34433
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.35 E-value=0.04 Score=55.54 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=33.3
Q ss_pred CeEEEEEccCCCccceeeec--cCC-------CCeEEEEec-CCCC---cEEEEEcCCCcEEEEeCCC
Q 010997 301 SCLILWDARVGTSPVIKVEK--AHD-------ADLHCVDWN-PLDD---NLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~--~~~-------~~v~~i~~s-p~~~---~~l~sgs~dg~i~iwd~~~ 355 (496)
+.|..+|..+++ ..-.++ .|. ....-+... . ++ .+++.++.+|.++++|..+
T Consensus 291 ~~v~AlD~~TG~--~~W~~q~~~~d~wd~~~~~~p~l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 291 SGQVGVDPSSGE--VKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SEEEEECTTTCC--EEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTT
T ss_pred ceEEEEeCCCCC--EEEEEeCCCCCcccccCCCCcEEEeeecC-CCCEEEEEEEECCCceEEEEECCC
Confidence 689999999988 333322 232 111112222 2 45 4788899999999999987
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.31 E-value=0.042 Score=50.69 Aligned_cols=155 Identities=7% Similarity=0.107 Sum_probs=91.8
Q ss_pred EEEEcC--CCeEEEEEccCCCccceeeecc------CC-CCeEEEEe--cCCCCc-EEEEEcCCCcEEEEeCCCCCCC-C
Q 010997 294 FCSVGD--DSCLILWDARVGTSPVIKVEKA------HD-ADLHCVDW--NPLDDN-LILTGSADNSVRMFDRRNLTSN-G 360 (496)
Q Consensus 294 l~s~~~--dg~i~iwd~~~~~~~~~~~~~~------~~-~~v~~i~~--sp~~~~-~l~sgs~dg~i~iwd~~~~~~~-~ 360 (496)
+++.-. +++|.+|++.....+ +..... .. ..+..+++ +|..+. ++++...+|.+..|++...... .
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~ 168 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI 168 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred EEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence 344444 689999987422211 222211 11 56667777 774443 6777888899999998542110 1
Q ss_pred CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-cCCC-CCcceEEe
Q 010997 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHR-DKVVDFHW 438 (496)
Q Consensus 361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~-~~V~~~~~ 438 (496)
..+.+++|.. .+.+-.+...+....|+ .+-++.-|..++...... ....++... .++. ..+..|+.
T Consensus 169 ~~~lVR~f~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~----------~~~~~v~~~~~g~l~aDvEGLai 236 (355)
T 3amr_A 169 SGKKVRAFKM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGG----------SNGTVIDRADGRHLTRDIEGLTI 236 (355)
T ss_dssp EEEEEEEEEC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSC----------SCCEEEEEBSSSSBCSCEEEEEE
T ss_pred cceEEEEecC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCC----------CCceEEEEecCCccccCcceEEE
Confidence 1456677764 45788899998777665 777775554445332110 112333333 2332 36777877
Q ss_pred --cCCCC-cEEEEecCCCCCCCCCCeEEEeecC
Q 010997 439 --NASDP-WTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 439 --~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
.+++. ++++|+-.+ +++.|||..
T Consensus 237 ~~~~~g~gyLivSsQG~-------~s~~Vydr~ 262 (355)
T 3amr_A 237 YYAADGKGYLMASSQGN-------SSYAIYDRQ 262 (355)
T ss_dssp EECGGGCEEEEEEEGGG-------TEEEEEESS
T ss_pred EecCCCCEEEEEEcCCC-------CEEEEEECC
Confidence 44455 788877555 899999996
No 295
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.30 E-value=0.022 Score=57.42 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=32.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
+|.|..||+.+ ++.+-+... ..++..-...-.+..+| .++.|+.++.||.+++
T Consensus 452 ~G~l~A~D~~t------G~~~W~~~~-~~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 452 LGQIKAYNAIT------GDYKWEKME-RFAVWGGTMATAGDLVF-YGTLDGYLKARDSDTG 504 (599)
T ss_dssp CEEEEEECTTT------CCEEEEEEE-SSCCCSBCEEETTTEEE-EECTTSEEEEEETTTC
T ss_pred cCeEEEEECCC------CCEEeEecC-CCCccCcceEecCCEEE-EECCCCeEEEEECCCC
Confidence 46788888887 666555532 11111111122344344 6888999999999985
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.30 E-value=0.19 Score=50.99 Aligned_cols=200 Identities=6% Similarity=-0.065 Sum_probs=127.4
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCc
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS 219 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~ 219 (496)
..+..|+|.+.++.++.+-..++.|+.+++.... ....+..... ...+|++.+.+. ++++-...+.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~------------~~~v~~~g~~-~P~GlAvD~~~~~LY~tD~~~~~ 103 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA------------LEHVVEFGLD-YPEGMAVDWLGKNLYWADTGTNR 103 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEECSSCS-CCCEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC------------cEEEEeCCCC-CcceEEEEeCCCEEEEEECCCCE
Confidence 4578999999777777787788999999987541 1112221112 246788876654 4455556788
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE-c
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV-G 298 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~ 298 (496)
|.+.+++..... ..+........+|++.|..+.++++- +
T Consensus 104 I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 104 IEVSKLDGQHRQ----------------------------------------VLVWKDLDSPRALALDPAEGFMYWTEWG 143 (628)
T ss_dssp EEEEETTSTTCE----------------------------------------EEECSSCCCEEEEEEETTTTEEEEEECS
T ss_pred EEEEecCCCcEE----------------------------------------EEEeCCCCCcccEEEccCCCeEEEeCCC
Confidence 888887642110 11112234568999998664666654 3
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l 378 (496)
..+.|...++.... ..... ..-...+.|++++..+.+.++-...+.|..+|+.. .....+...-.....|
T Consensus 144 ~~~~I~r~~~dG~~--~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-------~~~~v~~~~l~~P~gl 213 (628)
T 4a0p_A 144 GKPKIDRAAMDGSE--RTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-------LNREVIADDLPHPFGL 213 (628)
T ss_dssp SSCEEEEEETTSCS--CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECCSCEEEE
T ss_pred CCCEEEEEeCCCCc--eEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-------CceEEeeccCCCceEE
Confidence 36788888876554 22222 34567889999994455556666678999999875 2223333334456688
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 379 QWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 379 ~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
++.. .+++.+-...+.|...|..++
T Consensus 214 av~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 214 TQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEET--TEEEEEETTTTEEEEEETTTC
T ss_pred EEEC--CEEEEecCCCCEEEEEECCCC
Confidence 8865 357777777888999987653
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.20 E-value=0.035 Score=50.70 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=104.3
Q ss_pred eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CC--CCeEEEEe---cCCCCcEEEEEc-
Q 010997 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HD--ADLHCVDW---NPLDDNLILTGS- 343 (496)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~--~~v~~i~~---sp~~~~~l~sgs- 343 (496)
+.....--.++.|++....++++.-..++|..||...+..... .+.. .. ..+..|.| .| ++.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~ 85 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKN 85 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcc
Confidence 3344445678899886645666666899999999875541111 2211 11 13579999 68 677777543
Q ss_pred ------------CCCcEEEEeCC---CCCCCCCCCCceEec--c-----------CCCCEEEEEEcCCCCCEEEEEeCC-
Q 010997 344 ------------ADNSVRMFDRR---NLTSNGVGSPINKFE--G-----------HSAAVLCVQWSPDKSSVFGSSAED- 394 (496)
Q Consensus 344 ------------~dg~i~iwd~~---~~~~~~~~~~~~~~~--~-----------h~~~i~~l~~sp~~~~llas~~~d- 394 (496)
.+..|..||+. + ++.+.... . -......++..++|. .+++++.-
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~t------g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~ 158 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSEN------SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGM 158 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTT------CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESS
T ss_pred cccccccccccCCCCEEEEEcCCcCCC------CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCC
Confidence 26779999998 5 44444332 1 112478999999998 67788776
Q ss_pred CcEEEEECCCCCcccCCCCCCCCCCCeeEEEe---cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 395 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 395 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
+.|...+... +.. ...+.. .......+.++++|++..|++.-+ .|.|..+|+..
T Consensus 159 ~~I~rV~pdG--~~~-----------~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~--------~g~L~~fD~~~ 215 (334)
T 2p9w_A 159 PAIARVSADG--KTV-----------STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG--------PRALTAFDVSK 215 (334)
T ss_dssp CEEEEECTTS--CCE-----------EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS--------SSSEEEEECSS
T ss_pred CeEEEEeCCC--CEE-----------eeeeecCCCcccccCcceEEEeCCCCEEEEEcC--------CCeEEEEcCCC
Confidence 6665555443 111 111110 112234779999999988887544 49999999873
No 298
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.19 E-value=0.041 Score=55.42 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (496)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (496)
+|.|..||+.+ ++.+-+..... ++..-.....+. ++..++.|+.++.||.+++ +.+.
T Consensus 465 ~G~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG---------------~~lW 521 (582)
T 1flg_A 465 VGSLRAMDPVS------GKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSG---------------KELW 521 (582)
T ss_dssp SEEEEEECTTT------CCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTC---------------CEEE
T ss_pred cceEEEEECCC------CCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCCC---------------CEEE
Confidence 57899999988 66665554322 221111112344 3446889999999999885 3344
Q ss_pred EecCCCCC-cceEEecCCCCcEEEEe
Q 010997 425 QHAGHRDK-VVDFHWNASDPWTVVSV 449 (496)
Q Consensus 425 ~~~~h~~~-V~~~~~~p~~~~l~~s~ 449 (496)
.+...... -.-+.|..+|...++..
T Consensus 522 ~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 522 KFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EecCCCCcccCceEEEECCEEEEEEE
Confidence 44332221 12366666676555543
No 299
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.15 E-value=0.11 Score=48.15 Aligned_cols=196 Identities=10% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg 218 (496)
+++.+..+.+.+ ++.+++.+. +|.|.. ....+. . -.....++.. .+..+.+.+++.+++.+...+
T Consensus 120 ~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~DgG~-t----------W~~~~~~~~~-~~~~~~~~~~~~~~~~g~~G~ 184 (327)
T 2xbg_A 120 LPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDSGK-N----------WQALVQEAIG-VMRNLNRSPSGEYVAVSSRGS 184 (327)
T ss_dssp CSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESSTTS-S----------EEEEECSCCC-CEEEEEECTTSCEEEEETTSS
T ss_pred CCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCCCC-C----------CEEeecCCCc-ceEEEEEcCCCcEEEEECCCc
Confidence 345677888776 566666654 554432 111221 0 0111122333 478899999888777665444
Q ss_pred cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (496)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (496)
..+-+|-. +. ....+ -......+..+.+.+++ . ++.++
T Consensus 185 ~~~S~d~g-G~-------------------------------------tW~~~--~~~~~~~~~~~~~~~~g-~-~~~~~ 222 (327)
T 2xbg_A 185 FYSTWEPG-QT-------------------------------------AWEPH--NRTTSRRLHNMGFTPDG-R-LWMIV 222 (327)
T ss_dssp EEEEECTT-CS-------------------------------------SCEEE--ECCSSSCEEEEEECTTS-C-EEEEE
T ss_pred EEEEeCCC-CC-------------------------------------ceeEC--CCCCCCccceeEECCCC-C-EEEEe
Confidence 33434321 10 00000 11234567888888887 4 44555
Q ss_pred CCCeEEEEEccCCC-ccceeee-ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCCC
Q 010997 299 DDSCLILWDARVGT-SPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHSA 373 (496)
Q Consensus 299 ~dg~i~iwd~~~~~-~~~~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~ 373 (496)
.+|.+.+.+...+. ....... ......+.++++.+ ++.+++++. +|.| ++.... +..-..+. ....
T Consensus 223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~Dg------G~tW~~~~~~~~~~~ 293 (327)
T 2xbg_A 223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQDG------GQTWQQDVDVKKVPS 293 (327)
T ss_dssp TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEESST------TSSCEECGGGTTSSS
T ss_pred CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeCCC------CcccEEcCccCCCCC
Confidence 67888776422121 0001000 01234688999998 677777664 6766 333333 22223332 2345
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~ 402 (496)
.+.++.|.+++. ++ .++.+|.|.-++-
T Consensus 294 ~~~~v~~~~~~~-~~-~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 294 NFYKILFFSPDQ-GF-ILGQKGILLRYVT 320 (327)
T ss_dssp CCCEEEEEETTE-EE-EECSTTEEEEECC
T ss_pred CeEEEEEECCCc-eE-EEcCCceEEEEcC
Confidence 678898976554 44 6667888776654
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.017 Score=56.34 Aligned_cols=173 Identities=8% Similarity=0.063 Sum_probs=98.4
Q ss_pred ceeEEEEccC-CCceEEEEcCCCeEEEEEccCCCccceeeecc---CCCCeEEEEe-------cCCCCcEEEEEcCCC-c
Q 010997 280 TVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHCVDW-------NPLDDNLILTGSADN-S 347 (496)
Q Consensus 280 ~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~i~~-------sp~~~~~l~sgs~dg-~ 347 (496)
....|+|.|. +.+++++-...+.|++.|+..+. +...... .......|+| ++ ++..|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence 4678999984 43556665555789999988766 2222211 1235899999 99 777555554443 2
Q ss_pred ------EEEEeCCCCCCCCCCC--C-ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC-------CCCcccCC
Q 010997 348 ------VRMFDRRNLTSNGVGS--P-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-------KVGKKVEQ 411 (496)
Q Consensus 348 ------i~iwd~~~~~~~~~~~--~-~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~-------~~~~~~~~ 411 (496)
|.+++...... .. . ...+.... ....++++|++.+|+++-..++.|..+|+. .. .....
T Consensus 217 ~~~~~~V~~i~r~~~G~---~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg-~~~tp 291 (496)
T 3kya_A 217 GDESPSVYIIKRNADGT---FDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG-GSWDP 291 (496)
T ss_dssp GGGEEEEEEEECCTTSC---CSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT-CCCCC
T ss_pred cccCceEEEEecCCCCc---eeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc-eeecc
Confidence 66776332000 11 0 01222112 335778899777788888888999999987 32 11000
Q ss_pred CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
...........++.. +....-..++|+|++..++++-+.. +.|+.+++.
T Consensus 292 ~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~-------h~I~kid~d 340 (496)
T 3kya_A 292 IVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINN-------HYFMRSDYD 340 (496)
T ss_dssp BGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTT-------TEEEEEEEE
T ss_pred cccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCC-------CEEEEEecC
Confidence 000000001123333 2233457899999998767655443 788886654
No 301
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.99 E-value=0.28 Score=53.49 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=49.6
Q ss_pred EEecCCCceeEEEecCCC-----CcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec--C
Q 010997 135 KTIIHPGEVNRIRELPQN-----TKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--P 206 (496)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~-----~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~--p 206 (496)
....-.++|.|+++.|.. ..++|.|.. |++|+|+++....... ...+.+. ....++.+. .
T Consensus 548 ~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~----------~~~L~~~--~~p~si~l~~~~ 615 (1158)
T 3ei3_A 548 SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH----------KEMLGGE--IIPRSILMTTFE 615 (1158)
T ss_dssp EEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE----------EEECCSS--CCEEEEEEEEET
T ss_pred cccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE----------EEECCCC--CCCcEEEEEEeC
Confidence 334456789999998632 478999997 9999999997542110 1111111 112233322 2
Q ss_pred CCCceEEecCCCcEEEEecC
Q 010997 207 TEPYVLSGGKDKSVVLWSIQ 226 (496)
Q Consensus 207 ~~~~l~sg~~Dg~i~iwd~~ 226 (496)
...+|..|-.||.+.-+.++
T Consensus 616 ~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 616 SSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TEEEEEEEETTSEEEEEEEC
T ss_pred CCcEEEEEeCCCeEEEEEEc
Confidence 33588899999998777654
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.98 E-value=0.24 Score=46.28 Aligned_cols=243 Identities=10% Similarity=0.086 Sum_probs=118.6
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE---ecCCCCcceeeeecCC---CCceEEe
Q 010997 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL---TGHQDNAEFALAMCPT---EPYVLSG 214 (496)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l---~~h~~~~v~~l~~~p~---~~~l~sg 214 (496)
.....++|.| +++++++ ..+|.|++++ .+. . ..+..+ ..... ....|+|+|+ +..|+.+
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~-~---------~~~~~~~v~~~g~~-~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGR-L---------STYAELSVYHRGES-GLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTE-E---------EEEEECCCCCSTTC-SEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCC-c---------cEeecceEeecCCC-CceeEEECCCCCCCCEEEEE
Confidence 3467899999 7776655 4569999998 221 0 111111 11112 3579999998 4444443
Q ss_pred cC-C-----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee---cCCCceeEEE
Q 010997 215 GK-D-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN---GHEDTVEDVT 285 (496)
Q Consensus 215 ~~-D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~ 285 (496)
.. . +.|..++....... ... ..+..+. +.......++
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~---~~~-------------------------------~l~~~~p~~~~~~h~~~~l~ 141 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGV---LDR-------------------------------VVLDGIPARPHGLHSGGRIA 141 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEE---EEE-------------------------------EEEEEECCCTTCCCCCCCEE
T ss_pred EecCCCCCccEEEEEEeCCCCcC---ceE-------------------------------EEEEeCCCCCCCCcCCceEE
Confidence 32 2 56777776532100 000 0000011 1111236899
Q ss_pred EccCCCceEEEEcC-------------CCeEEEEEccCC------------CccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997 286 FCPSSAQEFCSVGD-------------DSCLILWDARVG------------TSPVIKVEKAHDADLHCVDWNPLDDNLIL 340 (496)
Q Consensus 286 ~~~~~~~~l~s~~~-------------dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 340 (496)
|.|++ .++++.+. .|.|.-++.... ....+. ..++ .....++|+|.++.+++
T Consensus 142 ~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~-rnp~g~a~d~~~g~l~v 218 (352)
T 2ism_A 142 FGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGH-RNPQGLAWHPKTGELFS 218 (352)
T ss_dssp ECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECC-SEECCCEECTTTCCEEE
T ss_pred ECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcC-CCcccEEEECCCCCEEE
Confidence 99998 66666432 245666665420 001111 1122 23567899984456555
Q ss_pred EEcCCCc--------EEEEeCCCCC----------CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997 341 TGSADNS--------VRMFDRRNLT----------SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (496)
Q Consensus 341 sgs~dg~--------i~iwd~~~~~----------~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~ 402 (496)
+-..... |.+...-..- ......++..+. +......++| .++. ++++.-..+.|...++
T Consensus 219 ~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~ 295 (352)
T 2ism_A 219 SEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGD-LYVAGLRGQALLRLVL 295 (352)
T ss_dssp EEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTE-EEEEETTTTEEEEEEE
T ss_pred EEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCE-EEEEECCCCEEEEEEE
Confidence 5433332 4433211100 000012444443 3345678888 4554 6666666777888777
Q ss_pred CCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
...+..... .....+. .-...+.++++.|+|..+++
T Consensus 296 ~~~~~~~~~------~~~~~~~---~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 296 EGERGRWRV------LRVETAL---SGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp EEETTEEEE------EEEEEEE---ESSCCEEEEEECTTSCEEEE
T ss_pred CCCCcceee------cchheec---ccCCCeeEEEECCCCcEEEE
Confidence 653210000 0001111 22357899999998854443
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.68 E-value=0.17 Score=45.87 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=54.1
Q ss_pred ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCCCC
Q 010997 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 361 (496)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~ 361 (496)
.+++.|+.+ ..+.+||+.+.+...+...........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~---- 186 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGH---- 186 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence 677777644 3688999887663222222111112222332 56777777755 458889987632
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred EEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCC
Confidence 2222112111111122222 33 477777764 4688999876
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.63 E-value=0.3 Score=45.49 Aligned_cols=115 Identities=7% Similarity=0.027 Sum_probs=70.2
Q ss_pred ceeEEEEcc--CCCc-eEEEEcC--CCeEEEEEccCCCcc--ceeeecc-CCCCeEEEEecCCCCcEEEEEcC-------
Q 010997 280 TVEDVTFCP--SSAQ-EFCSVGD--DSCLILWDARVGTSP--VIKVEKA-HDADLHCVDWNPLDDNLILTGSA------- 344 (496)
Q Consensus 280 ~v~~l~~~~--~~~~-~l~s~~~--dg~i~iwd~~~~~~~--~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~------- 344 (496)
....+.+.+ ++.. ++++-.. +.+|.+|++...... .+....+ .-...+.+++.+ ++.+.++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence 455666655 3322 3444333 578888888765321 1222221 124678999999 7887777541
Q ss_pred ----------CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 345 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 345 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.|.|.-+|... +..+...-...+.++|+|+++.++++-+..+.|..|++..
T Consensus 192 ~~~e~~~~~~~g~vyr~d~~~---------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSPND---------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHHHTTCCCEEEEEECTTC---------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccchhhccCCccEEEEEECCe---------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 24455554321 2222222345789999999998888887889999999875
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.62 E-value=0.37 Score=45.56 Aligned_cols=156 Identities=12% Similarity=0.131 Sum_probs=92.8
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC--CC-CcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QD-NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h--~~-~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~ 228 (496)
++.-++.+- ++.||.-++.... .-+.+... -. ..|..+..+|+|++||..+ +..|.|-.+..+
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~------------~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDS------------LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWG 96 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCS------------SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTT
T ss_pred CCCEEEEEE-CCEEEEEECCCCC------------cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCc
Confidence 444444443 3578877777541 12233322 11 1477899999999999887 568999888632
Q ss_pred cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee------cCCCceeEEEEccCCC--ceEEEEcCC
Q 010997 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN------GHEDTVEDVTFCPSSA--QEFCSVGDD 300 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~--~~l~s~~~d 300 (496)
........ . ... .. .+.+. ....+|..+.|||-+. ..|++-..|
T Consensus 97 ~~~~~~~~--~---~~~----------------------~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD 148 (452)
T 3pbp_A 97 YSNVEDVS--I---QDA----------------------FQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED 148 (452)
T ss_dssp CSCCCCHH--H---HHT----------------------TE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred cccCcccc--c---ccc----------------------cc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence 11100000 0 000 00 01111 1357899999999763 378999999
Q ss_pred CeEEEEEccCCCccceeee---------ccCCCCeEEEEecCCCCcEEEE--EcCCCcEEEE
Q 010997 301 SCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILT--GSADNSVRMF 351 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~---------~~~~~~v~~i~~sp~~~~~l~s--gs~dg~i~iw 351 (496)
+.|++||+........ .+ ......|.+++|.+ ++-.|.. .+..|.|.-.
T Consensus 149 ~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 149 DTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred CEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 9999999986331111 21 12236788999998 7766666 4478888655
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.60 E-value=0.24 Score=44.96 Aligned_cols=103 Identities=9% Similarity=0.087 Sum_probs=52.7
Q ss_pred ceEEEEcCCC-----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-------CcEEEEeCCCCCCC
Q 010997 292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-------NSVRMFDRRNLTSN 359 (496)
Q Consensus 292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-------g~i~iwd~~~~~~~ 359 (496)
.+++.|+.++ .+.+||+.+.+...+...........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-- 184 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE-- 184 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence 6777776553 577888877653222111111112222232 56777777653 358889987632
Q ss_pred CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 360 ~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 185 --W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 185 --WTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTT
T ss_pred --EEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCC
Confidence 1222112111111122222 33 377777764 3688899876
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.42 E-value=0.39 Score=43.57 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=52.6
Q ss_pred ceEEEEcCC------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---------CCcEEEEeCCCC
Q 010997 292 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRMFDRRNL 356 (496)
Q Consensus 292 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---------dg~i~iwd~~~~ 356 (496)
.+++.|+.+ ..+.+||..+.................++.+ ++.+++.|+. -..+.+||+.+.
T Consensus 103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 677777765 4688999887652222111111111222232 5677777764 345889998873
Q ss_pred CCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
. ...+..+......-..+.+ ++. |++.|+.+ ..+.+||+.+
T Consensus 180 ~----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 180 T----WTELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp E----EEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETTT
T ss_pred e----EEECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCCC
Confidence 2 1222211111111122222 343 77777653 3588899876
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.36 E-value=0.28 Score=44.72 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=53.3
Q ss_pred ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCCCC
Q 010997 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 361 (496)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~ 361 (496)
.+++.|+.+ ..+.+||+.+.+.............-.++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~---- 195 (308)
T 1zgk_A 123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE---- 195 (308)
T ss_dssp EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence 566776643 3588899887652221111111112223333 46777777764 458889987632
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 196 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred EeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCC
Confidence 1112111111111222333 34 377777764 4588999876
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.27 E-value=0.65 Score=42.22 Aligned_cols=208 Identities=14% Similarity=0.192 Sum_probs=124.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC---CcceeeeecCCCCc
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD---NAEFALAMCPTEPY 210 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~---~~v~~l~~~p~~~~ 210 (496)
++....+..|.-=+|.. .+.|+-.+.. .|+-|++.... .|...+..|.. .-|.....+++.++
T Consensus 100 lks~~~~e~VvfWkWis--~~~L~lVT~t-aVyHWs~~~~s-----------~P~kvFdR~~~L~~~QIInY~~d~~~kW 165 (365)
T 2xzh_A 100 MKAHTMTDDVTFWKWIS--LNTVALVTDN-AVYHWSMEGES-----------QPVKMFDRHSSLAGCQIINYRTDAKQKW 165 (365)
T ss_dssp EEEEECSSCEEEEEECS--SSEEEEEESS-EEEEEESSTTC-----------CCEEEEECCGGGTTCEEEEEEECTTSCE
T ss_pred hcceecCCccEEEEecC--CCeEEEEcCC-cEEEEcccCCC-----------CCceeeecchhcccceEEEEEECCCCCE
Confidence 34444556777777765 3355555543 89999987631 55566665542 23556667778886
Q ss_pred eEEec-------CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997 211 VLSGG-------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 211 l~sg~-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
++..+ -.|.+.+|..+.... +.+.+|......
T Consensus 166 ~~l~GI~~~~~~v~G~mQLYS~er~~s-----------------------------------------Q~ieGhaa~F~~ 204 (365)
T 2xzh_A 166 LLLTGISAQQNRVVGAMQLYSVDRKVS-----------------------------------------QPIEGHAASFAQ 204 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTTEE-----------------------------------------EEECCSEEEEEE
T ss_pred EEEEeEeccCCccceeEEEEeeccccc-----------------------------------------ceeeeeeeeeEE
Confidence 55433 247788888875432 566677655444
Q ss_pred EEEcc--CCCceEEEEcC---CCeEEEEEccCC---Ccccee----e-e--ccCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997 284 VTFCP--SSAQEFCSVGD---DSCLILWDARVG---TSPVIK----V-E--KAHDADLHCVDWNPLDDNLILTGSADNSV 348 (496)
Q Consensus 284 l~~~~--~~~~~l~s~~~---dg~i~iwd~~~~---~~~~~~----~-~--~~~~~~v~~i~~sp~~~~~l~sgs~dg~i 348 (496)
+.+.- ....+|+.+.. .+.++|-++... ..+..+ . + ....+-..++..++ ....+..-+.-|.|
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~i 283 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYI 283 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEE
Confidence 33321 11123333322 268999998543 111111 0 1 12345567888888 67788888899999
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
++||+.+ +.++..-+-....|..-+-+....-++ .-...|.|.--.++.
T Consensus 284 hlyDleT------gt~i~~nrIS~d~iF~ta~~~~~~Gi~-~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 284 HLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEETTT------CCEEEEEECCSSCEEEEEEEGGGTEEE-EEETTCEEEEEEECT
T ss_pred EEEEccc------CcEEEEeccCCCceEEecccCCCCcEE-EEcCCCEEEEEEECc
Confidence 9999999 788877766666776555544433344 444566665555544
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.25 E-value=0.76 Score=42.85 Aligned_cols=247 Identities=10% Similarity=0.071 Sum_probs=121.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCC---CCceEEe
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT---EPYVLSG 214 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~---~~~l~sg 214 (496)
-.....++|.| +++++++ ..+|.|++++. .+. . .+..+. .........|+++|+ +..|+.+
T Consensus 28 l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d~-~G~--~---------~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 28 LEVPWSIAPLG-GGRYLVT-ERPGRLVLISP-SGK--K---------LVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CSCEEEEEEEE-TTEEEEE-ETTTEEEEECS-SCE--E---------EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCCeEEEEcC-CCeEEEE-eCCCEEEEEeC-CCc--e---------EeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 34568899999 7776655 45589999873 331 0 111110 111113578999997 4444443
Q ss_pred cC----C----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe-eeee-cCCCceeEE
Q 010997 215 GK----D----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-GIYN-GHEDTVEDV 284 (496)
Q Consensus 215 ~~----D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l 284 (496)
.. + ..|..|+......... ..+.+ ..+. ........|
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~---------------------------------~~~~l~~~~~~~~~h~~~~l 140 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLK---------------------------------EVKTLIDGIPGAYIHNGGRI 140 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEE---------------------------------EEEEEEEEEECCSSCCCCCE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcC---------------------------------ccEEEEEcCCCCCCcCCceE
Confidence 32 3 5666666543210000 00000 0111 111234678
Q ss_pred EEccCCCceEEEEcC-------------CCeEEEEEccCCC-------ccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997 285 TFCPSSAQEFCSVGD-------------DSCLILWDARVGT-------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 344 (496)
.|.|++ .++++.+. .|.|.-++....- ...+. ..++ .....++|+|.++.++++-..
T Consensus 141 ~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 141 RFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp EECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCCEEEEECC
T ss_pred EECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEecC
Confidence 999998 56666443 2455555543210 00111 1233 235689999844565555333
Q ss_pred CC---cEEEEeCCCCC----------CCCCCCCceEeccCCCCEEEEEEc-------CCCCCEEEEEeCCCcEEEEECCC
Q 010997 345 DN---SVRMFDRRNLT----------SNGVGSPINKFEGHSAAVLCVQWS-------PDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 345 dg---~i~iwd~~~~~----------~~~~~~~~~~~~~h~~~i~~l~~s-------p~~~~llas~~~dg~i~iwd~~~ 404 (496)
.. .|.+...-..- ......++..+.........++|. .++. +|++.-..+.|...++..
T Consensus 218 ~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 218 PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECG
T ss_pred CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECC
Confidence 22 24433211100 000012444442223467888884 4554 665666677888888765
Q ss_pred CCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997 405 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 449 (496)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~ 449 (496)
.+... .....+.+-...+.++++.|+|. |+++.
T Consensus 297 ~g~~~-----------~~~~~~~~~~~rp~~v~~~pDG~-lyv~~ 329 (354)
T 3a9g_A 297 NMEVR-----------KISTFFKNVFGRLRDVVIDDDGG-ILIST 329 (354)
T ss_dssp GGCEE-----------EEEEECTTTSCCEEEEEECTTSC-EEEEE
T ss_pred CCccc-----------ceeeeccCCCCCeeEEEECCCCc-EEEEE
Confidence 32110 00111223345789999999885 45443
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.15 E-value=0.92 Score=42.88 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=83.2
Q ss_pred CCeEEEEEccCCCccceeeeccC----CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC------CCceEec
Q 010997 300 DSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG------SPINKFE 369 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~------~~~~~~~ 369 (496)
++.||.-++.... ..+.+..- -..|..+..|| +|.+||..+. ..|.|..+......... -..+.+.
T Consensus 40 ~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~ 115 (452)
T 3pbp_A 40 DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYS 115 (452)
T ss_dssp TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEE
T ss_pred CCEEEEEECCCCC--cceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEE
Confidence 4788888887543 23332221 23688899999 9999999864 47888888732111100 1112222
Q ss_pred c------CCCCEEEEEEcCCCCC--EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997 370 G------HSAAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441 (496)
Q Consensus 370 ~------h~~~i~~l~~sp~~~~--llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~ 441 (496)
- ...+|..+.|+|-+.. -|++-..|+.|++||+........ ..... .-.+....+...|.+++|..+
T Consensus 116 l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~----~L~k~-~~~fg~d~~~~ev~S~~Fg~~ 190 (452)
T 3pbp_A 116 IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI----VLNKP-NNSFGLDARVNDITDLEFSKD 190 (452)
T ss_dssp GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE----EESCC-CSEEESCSSCCCEEEEEECTT
T ss_pred cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc----chhcc-ccccCCCcccceEEEEEEcCC
Confidence 1 2578999999996532 456777899999999987211110 00000 112333444567889999996
Q ss_pred CCcEEE
Q 010997 442 DPWTVV 447 (496)
Q Consensus 442 ~~~l~~ 447 (496)
+-.|.+
T Consensus 191 ~lTLYv 196 (452)
T 3pbp_A 191 GLTLYC 196 (452)
T ss_dssp SSCEEE
T ss_pred CcEEEE
Confidence 554544
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.05 E-value=0.84 Score=41.50 Aligned_cols=196 Identities=13% Similarity=0.139 Sum_probs=111.9
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997 149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (496)
Q Consensus 149 ~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~ 228 (496)
+| ..++||--+ ..+++|||+++. ..+..+.-.. .|.-=.|-.... |+-.. +..|.-|++...
T Consensus 75 nP-~~~ViALra-g~~LQiFnletK------------~klks~~~~e--~VvfWkWis~~~-L~lVT-~taVyHWs~~~~ 136 (365)
T 2xzh_A 75 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTD--DVTFWKWISLNT-VALVT-DNAVYHWSMEGE 136 (365)
T ss_dssp CS-SSSEEEEEE-TTEEEEEETTTT------------EEEEEEECSS--CEEEEEECSSSE-EEEEE-SSEEEEEESSTT
T ss_pred CC-CccEEEEec-CCeEEEechHHh------------hhhcceecCC--ccEEEEecCCCe-EEEEc-CCcEEEEcccCC
Confidence 66 667777766 568999999987 2233333333 344455554333 33333 568999998641
Q ss_pred cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC----CceeEEEEccCCCceEEEEc------
Q 010997 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE----DTVEDVTFCPSSAQEFCSVG------ 298 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~------ 298 (496)
..|.+.+..|. ..|..-..+++...++++|-
T Consensus 137 ---------------------------------------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 137 ---------------------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp ---------------------------------------CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred ---------------------------------------CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCc
Confidence 12234444332 34555566666644444442
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEecC--CCCcEEEEEcC---CCcEEEEeCCCC-CCCCC-CC-CceEec-
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP--LDDNLILTGSA---DNSVRMFDRRNL-TSNGV-GS-PINKFE- 369 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~sgs~---dg~i~iwd~~~~-~~~~~-~~-~~~~~~- 369 (496)
-.|.+.+|..+... ...+.+|......+.+.- ....+|+.+.. .+.++|.++... ..... .+ .+..+-
T Consensus 178 v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fp 254 (365)
T 2xzh_A 178 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 254 (365)
T ss_dssp EEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCC
T ss_pred cceeEEEEeecccc---cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCC
Confidence 24788999887654 455667766555554432 11234444433 268999998664 11110 01 111111
Q ss_pred --cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 370 --~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
.-.+-..++..|+... ++..-..-|.|++||+.++
T Consensus 255 pea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTg 291 (365)
T 2xzh_A 255 PEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG 291 (365)
T ss_dssp TTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC
T ss_pred ccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccC
Confidence 1234456888888777 4456777999999999996
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.80 E-value=0.41 Score=43.34 Aligned_cols=103 Identities=14% Similarity=0.192 Sum_probs=53.5
Q ss_pred ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCCCC
Q 010997 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 361 (496)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~ 361 (496)
.+++.|+.+ ..+.+||+.+.....+...........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~---- 233 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS---- 233 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc----
Confidence 677777654 4588999887653222111111112223333 56777888764 468999988632
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
...+..+.........+.+ ++. |++.|+.+ ..|.+||+.+
T Consensus 234 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 234 WTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTT
T ss_pred EEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCC
Confidence 2222112111111222222 344 67777755 3567788765
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.69 E-value=1.3 Score=41.07 Aligned_cols=111 Identities=10% Similarity=0.189 Sum_probs=65.0
Q ss_pred CceeEEEEccCCCceEEEEc-----------------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-E
Q 010997 279 DTVEDVTFCPSSAQEFCSVG-----------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-L 340 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~ 340 (496)
...+++.+.++| .++++.. ..|.|.-+|. ++ . ......-...+.|+|+| ++..| +
T Consensus 165 ~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--~-~~~~~~l~~pNGia~sp-Dg~~lYv 237 (355)
T 3sre_A 165 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--V-RVVAEGFDFANGINISP-DGKYVYI 237 (355)
T ss_dssp SSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--C-EEEEEEESSEEEEEECT-TSSEEEE
T ss_pred CCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce--E-EEeecCCcccCcceECC-CCCEEEE
Confidence 457899999998 5666543 1244555554 33 2 22223345679999999 77655 4
Q ss_pred EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-CCCCEEEEEeCC-CcEEEEE
Q 010997 341 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAED-GLLNIWD 401 (496)
Q Consensus 341 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~llas~~~d-g~i~iwd 401 (496)
+-+..+.|..||+..... ......+ ...+..-.+++.+ +|. +.+++..+ +.|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~---l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWT---LTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSC---EEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCc---EecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEEEC
Confidence 455678999999874110 1112233 2245677888888 477 56555433 3343343
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.69 E-value=1.5 Score=41.60 Aligned_cols=208 Identities=14% Similarity=0.196 Sum_probs=128.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC---CcceeeeecCCCCc
Q 010997 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD---NAEFALAMCPTEPY 210 (496)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~---~~v~~l~~~p~~~~ 210 (496)
++....+..|.-=+|.. .+.|+-.+. ..|+-|++.... .|...+..|.. .-|.....+++.++
T Consensus 99 lks~~~~e~VvfWkWis--~~~l~lVT~-taVyHWsi~~~s-----------~P~kvFdR~~~L~~~QIInY~~d~~~kW 164 (494)
T 1bpo_A 99 MKAHTMTDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGES-----------QPVKMFDRHSSLAGCQIINYRTDAKQKW 164 (494)
T ss_dssp EEEEECSSCCCEEEEEE--TTEEEEECS-SEEEEEESSSSC-----------CCEEEEECCGGGTTCEEEEEEECTTSSE
T ss_pred hcceecCCCceEEEecC--CCeEEEEcC-CeeEEecccCCC-----------CchhheecchhcccceEEEEEECCCCCe
Confidence 34444456677777765 335655554 489999997531 55666665542 23556677788886
Q ss_pred eEEec-------CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997 211 VLSGG-------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (496)
Q Consensus 211 l~sg~-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (496)
++-.| -.|.+.+|..+.... +.+.+|......
T Consensus 165 ~~l~GI~~~~~~v~G~mQLYS~er~~s-----------------------------------------Q~ieGhaa~F~~ 203 (494)
T 1bpo_A 165 LLLTGISAQQNRVVGAMQLYSVDRKVS-----------------------------------------QPIEGHAASFAQ 203 (494)
T ss_dssp EEEEEEEEETTEEEEEEEEEESTTCCE-----------------------------------------EEECCSEEEEEE
T ss_pred EEEEeecccCCcccceEEEeecccccc-----------------------------------------chheeeeeeeEE
Confidence 65333 357788888875432 567777665554
Q ss_pred EEEccC--CCceEEEEcC---CCeEEEEEccCC---Ccccee----e---eccCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997 284 VTFCPS--SAQEFCSVGD---DSCLILWDARVG---TSPVIK----V---EKAHDADLHCVDWNPLDDNLILTGSADNSV 348 (496)
Q Consensus 284 l~~~~~--~~~~l~s~~~---dg~i~iwd~~~~---~~~~~~----~---~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i 348 (496)
+...-. ...+|+.+.. .+.++|.++... ..+..+ . ...-.+-..++..++ ....+..-+.-|.|
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i 282 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYI 282 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceE
Confidence 444211 1123443333 378999998653 111101 0 112345567888898 77788888899999
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
++||+.+ +.++..-+-....|..-+-+....-++ .....|.|.--.+..
T Consensus 283 ~lyDleT------gt~i~~nrIs~~~iF~t~~~~~~~Gi~-~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 283 HLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEETTT------CCEEEEEECCSSCEEEEEEETTTTEEE-EEETTCEEEEEEECT
T ss_pred EEEeccc------ceeeeeecccCCceEEecccCCCCcEE-EEccCceEEEEEEcc
Confidence 9999999 788877766667776666655544454 444677666655544
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.59 E-value=0.42 Score=43.36 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=53.3
Q ss_pred ceEEEEcC---------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCC
Q 010997 292 QEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLT 357 (496)
Q Consensus 292 ~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~ 357 (496)
.+++.|+. -..+.+||+.+.....+.........-.++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 56666653 34588999887753222111111111222333 46777777754 358899988632
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+..
T Consensus 228 ----W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 228 ----WKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp ----EEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTT
T ss_pred ----EEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCC
Confidence 2222222211222223333 33 377788754 4578888876
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.57 E-value=0.3 Score=44.30 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=52.7
Q ss_pred ceEEEEcCC-------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCC
Q 010997 292 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSN 359 (496)
Q Consensus 292 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~ 359 (496)
.+++.|+.+ ..+.+||+.+.....+...........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-- 231 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA-- 231 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE--
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC--
Confidence 566666543 3588999887653222111111112223333 56788888765 368899988622
Q ss_pred CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC-----cEEEEECCC
Q 010997 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK 404 (496)
Q Consensus 360 ~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg-----~i~iwd~~~ 404 (496)
...+..+.........+.+ ++. |++.|+.++ .|.+||+.+
T Consensus 232 --W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 232 --WRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred --EeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCC
Confidence 1212111111111112222 343 677777553 478888876
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.21 E-value=1.1 Score=40.68 Aligned_cols=103 Identities=7% Similarity=0.058 Sum_probs=52.9
Q ss_pred ceEEEEcCC--------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-C-----CcEEEEeCCCCC
Q 010997 292 QEFCSVGDD--------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-D-----NSVRMFDRRNLT 357 (496)
Q Consensus 292 ~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-d-----g~i~iwd~~~~~ 357 (496)
.+++.|+.+ ..+.+||..+.+...............++.+ ++.+++.|+. + ..+.+||+.+..
T Consensus 100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 567777642 4588999887652221111111112222332 5677778776 2 468899988632
Q ss_pred CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC-----cEEEEECCC
Q 010997 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK 404 (496)
Q Consensus 358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg-----~i~iwd~~~ 404 (496)
...+..+......-..+.+ ++. |++.|+.++ .+.+||+.+
T Consensus 177 ----W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 177 ----WKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ----EEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTT
T ss_pred ----EEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCC
Confidence 2222222111111122222 343 777777654 478888876
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.17 E-value=2.2 Score=40.42 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=115.0
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCC
Q 010997 148 ELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD 227 (496)
Q Consensus 148 ~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~ 227 (496)
.+| ..++||--+ ..++.|||+++. ..+..+.-.. .|.-=.|-.+. .|+-.+ +..|.-|++..
T Consensus 73 MnP-~~~iiALra-g~~lQiFnle~K------------~klks~~~~e--~VvfWkWis~~-~l~lVT-~taVyHWsi~~ 134 (494)
T 1bpo_A 73 MNP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTD--DVTFWKWISLN-TVALVT-DNAVYHWSMEG 134 (494)
T ss_dssp ECS-SSSCEEEEE-TTEEEEEETTTT------------EEEEEEECSS--CCCEEEEEETT-EEEEEC-SSEEEEEESSS
T ss_pred eCC-CCcEEEEec-CCeEEEEchHHh------------hhhcceecCC--CceEEEecCCC-eEEEEc-CCeeEEecccC
Confidence 356 566777665 569999999987 2223333333 34444554333 343333 56899999864
Q ss_pred ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC----CceeEEEEccCCCceEEEEc-----
Q 010997 228 HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE----DTVEDVTFCPSSAQEFCSVG----- 298 (496)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~----- 298 (496)
. ..|.+.+..|. ..|..-..+++...++++|-
T Consensus 135 ~---------------------------------------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 175 (494)
T 1bpo_A 135 E---------------------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (494)
T ss_dssp S---------------------------------------CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred C---------------------------------------CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence 1 12234444332 34555566677644444442
Q ss_pred -CCCeEEEEEccCCCccceeeeccCCCCeEEEEecC--CCCcEEEEEcCC---CcEEEEeCCCC-CCCCC-CCC-ceEe-
Q 010997 299 -DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP--LDDNLILTGSAD---NSVRMFDRRNL-TSNGV-GSP-INKF- 368 (496)
Q Consensus 299 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~sgs~d---g~i~iwd~~~~-~~~~~-~~~-~~~~- 368 (496)
-.|.+.+|..+... ...+.+|......+.+.- ....+|+.+... +.++|.++... ..... .+. +..+
T Consensus 176 ~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~f 252 (494)
T 1bpo_A 176 RVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (494)
T ss_dssp EEEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred cccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeC
Confidence 34789999987665 556678877666665542 112355555543 78999999764 11110 011 1111
Q ss_pred --ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 369 --EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 369 --~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
..-.+-..++..|+.... +..-..-|.|++||+.+.
T Consensus 253 ppe~~~DFPvamqvs~kygv-iyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 253 PPEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETG 290 (494)
T ss_dssp CTTSTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTTC
T ss_pred CcccccCceeEEEecccCCE-EEEEecCceEEEEecccc
Confidence 112344568888888774 457777999999999996
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.85 E-value=1.9 Score=47.34 Aligned_cols=208 Identities=13% Similarity=0.222 Sum_probs=113.8
Q ss_pred eeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC--CC
Q 010997 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH--ED 279 (496)
Q Consensus 202 l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~ 279 (496)
.-.+|..+.|+--+ ..++.|+|+++... +..| ..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~k-------------------------------------------lks~~~~e 106 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSK-------------------------------------------MKAHTMTD 106 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhh-------------------------------------------hcccccCC
Confidence 34677776665544 67999999986432 2222 23
Q ss_pred ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC----CCCeEEEEecCCCCcEEEEEc-------CCCcE
Q 010997 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGS-------ADNSV 348 (496)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~i~~sp~~~~~l~sgs-------~dg~i 348 (496)
+|.-=.|-.. +.|+..+ +..|..|++..... +.+.+..| ...|..-..++ +..+++..| -.|.+
T Consensus 107 ~VvfWkWis~--~~l~lVT-~~aVyHW~~~~~s~-P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 107 DVTFWKWISL--NTVALVT-DNAVYHWSMEGESQ-PVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred CceEEEecCC--CeeEEEc-CCeEEEeccCCCCc-cHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCccccee
Confidence 4544455433 3444443 46899999975433 33344444 46677777788 666665433 34788
Q ss_pred EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc--CCCCCEEEEEeC---CCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (496)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s--p~~~~llas~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 423 (496)
.+|.... ..-..+.||.+....+... +....+|+-+.. .+.++|-++............ ....+.
T Consensus 182 QLyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k---k~~~~~ 251 (1630)
T 1xi4_A 182 QLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---KAVDVF 251 (1630)
T ss_pred eeeeccc-------ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc---cccccc
Confidence 8998886 4555677776665444443 222335543332 368999998653111100000 011111
Q ss_pred EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997 424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 482 (496)
Q Consensus 424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l 482 (496)
+....-.+--.++..++..+.+.+-+- -|.|+++|+. ++.++..-
T Consensus 252 ~~~~~~~Dfpv~~~vs~k~g~iy~itk--------~G~~~~~d~~------t~~~i~~~ 296 (1630)
T 1xi4_A 252 FPPEAQNDFPVAMQISEKHDVVFLITK--------YGYIHLYDLE------TGTCIYMN 296 (1630)
T ss_pred CCcccccCcceEEEeccccCEEEEEec--------CceEEEEecc------cchhhhhc
Confidence 111122333446677776554443322 2899999998 56555443
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.63 E-value=0.77 Score=42.79 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=21.5
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQ 226 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~ 226 (496)
...|+|.|+|++|+.+...|.|++++..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 3799999999844455568999998853
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.62 E-value=0.99 Score=41.76 Aligned_cols=154 Identities=14% Similarity=0.207 Sum_probs=80.2
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (496)
-++|+|.|+|.+|++--..|.|++++..++........ -..+....
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~----------------------------------~~v~~~g~ 79 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV----------------------------------PGVSPSGE 79 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------------------------TTCCCBTT
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc----------------------------------CceeecCC
Confidence 47999999998777665589999987654321100000 01122234
Q ss_pred CceeEEEEccC---CCceEEEE--cCCCeEEEEEccCCC--------ccce-eeec-cCCCCeEEEEecCCCCcEEEEEc
Q 010997 279 DTVEDVTFCPS---SAQEFCSV--GDDSCLILWDARVGT--------SPVI-KVEK-AHDADLHCVDWNPLDDNLILTGS 343 (496)
Q Consensus 279 ~~v~~l~~~~~---~~~~l~s~--~~dg~i~iwd~~~~~--------~~~~-~~~~-~~~~~v~~i~~sp~~~~~l~sgs 343 (496)
.....|+++|+ +..++++- ..++.|.-|.+.... ...+ ..+. ........|+|.| ++.+.++.+
T Consensus 80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G 158 (347)
T 3das_A 80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG 158 (347)
T ss_dssp BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence 56789999995 32444432 245566666665421 0111 1111 1122356799999 787777644
Q ss_pred C-------------CCcEEEEeCCCCCC--CCC-CCCceEeccCCCCEEEEEEcCCCCCEEEE
Q 010997 344 A-------------DNSVRMFDRRNLTS--NGV-GSPINKFEGHSAAVLCVQWSPDKSSVFGS 390 (496)
Q Consensus 344 ~-------------dg~i~iwd~~~~~~--~~~-~~~~~~~~~h~~~i~~l~~sp~~~~llas 390 (496)
. .|.|.-++....-. +.- ...+. -.+|.. ...++|+|++. |+++
T Consensus 159 d~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~-L~~~ 218 (347)
T 3das_A 159 ESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQR-LFAS 218 (347)
T ss_dssp CTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBCCSB-CCEEEECTTCC-EEEE
T ss_pred CCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeCCCC-cceEEECCCCC-EEEE
Confidence 2 24444444432100 000 01111 124544 45899999876 5533
No 323
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.57 E-value=2.9 Score=38.78 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=37.7
Q ss_pred CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEE
Q 010997 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 391 (496)
Q Consensus 324 ~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~ 391 (496)
.....++|. ++.++++.-..+.|...++..............+-.-...+..+++.|+|. |+++.
T Consensus 268 ~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~~ 332 (352)
T 2ism_A 268 FPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-LYVTT 332 (352)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-EEEEE
T ss_pred CCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-EEEEE
Confidence 356677773 577777777777888888764110000000122212235788999999997 55444
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.42 E-value=4.1 Score=44.87 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=105.6
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997 149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (496)
Q Consensus 149 ~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~ 228 (496)
+| ..++||--+ ..++.|||+++.. .+..+.-.. .|.-=.|-.... |+-.+ +..|.-|++...
T Consensus 74 nP-~~~iiALra-g~~lQiFnl~~k~------------klks~~~~e--~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 74 NP-ASKVIALKA-GKTLQIFNIEMKS------------KMKAHTMTD--DVTFWKWISLNT-VALVT-DNAVYHWSMEGE 135 (1630)
T ss_pred CC-CcceEEEec-CCeEEEeehHHhh------------hhcccccCC--CceEEEecCCCe-eEEEc-CCeEEEeccCCC
Confidence 55 556777665 5699999998872 222222222 244445543333 33332 568999999641
Q ss_pred cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC----CCceeEEEEccCCCceEEEEc------
Q 010997 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------ 298 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~------ 298 (496)
. .|.+.+..| ...|..-..+++...++++|-
T Consensus 136 s---------------------------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~ 176 (1630)
T 1xi4_A 136 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (1630)
T ss_pred C---------------------------------------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCc
Confidence 1 111222222 234555555666644444432
Q ss_pred CCCeEEEEEccCCCccceeeeccCCCCeEEEEec--CCCCcEEEEEcC---CCcEEEEeCCCC-CCCCC--CCCceEecc
Q 010997 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PLDDNLILTGSA---DNSVRMFDRRNL-TSNGV--GSPINKFEG 370 (496)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s--p~~~~~l~sgs~---dg~i~iwd~~~~-~~~~~--~~~~~~~~~ 370 (496)
-.|.+.+|....+. ...+.+|.+....+... +....+++.+.. .+.++|.++... ..++. .+.+..+..
T Consensus 177 v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~ 253 (1630)
T 1xi4_A 177 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (1630)
T ss_pred ccceeeeeeccccc---chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence 45889999987665 33455666555444442 212234443332 268999998764 11110 011111111
Q ss_pred ---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 371 ---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 371 ---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
-..-..++..++.... +..-+.-|.|++||+.++
T Consensus 254 ~~~~~Dfpv~~~vs~k~g~-iy~itk~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 254 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETG 290 (1630)
T ss_pred cccccCcceEEEeccccCE-EEEEecCceEEEEecccc
Confidence 1233457777877664 446677899999999985
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.39 E-value=0.63 Score=39.69 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=39.3
Q ss_pred eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-----eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 348 (496)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i 348 (496)
..++.|.|++ .+.++ .||.|.-++-.+..... ...-...=..+..|.+.| ++.+.++. |+.+
T Consensus 90 F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~l 156 (236)
T 1tl2_A 90 FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQF 156 (236)
T ss_dssp CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEE
T ss_pred ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcE
Confidence 4788999998 55555 56988877753322110 111111115679999999 88888877 7764
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.16 E-value=0.94 Score=41.09 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=52.5
Q ss_pred ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCCCC
Q 010997 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 361 (496)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~ 361 (496)
.+++.|+.+ ..+.+||+.+.+...+...........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~---- 242 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET---- 242 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc----
Confidence 677777654 4588999877652221111111112223333 56777888765 468999988632
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
...+..+.........+.+ ++. |++.|+.+ ..|.+||+.+
T Consensus 243 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 243 WTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTT
T ss_pred EEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCC
Confidence 2222222111111122222 333 67777643 3467777765
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.77 E-value=3.8 Score=37.14 Aligned_cols=103 Identities=8% Similarity=0.120 Sum_probs=50.6
Q ss_pred ceEEEEcCC-------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC------CCcEEEEeCCCCCC
Q 010997 292 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRRNLTS 358 (496)
Q Consensus 292 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~------dg~i~iwd~~~~~~ 358 (496)
.+++.|+.+ ..+.+||..+.+.............-.++.. ++.+++.|+. -..+.+||+.+..
T Consensus 111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 186 (318)
T 2woz_A 111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKKGD- 186 (318)
T ss_dssp EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE---TTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE---CCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence 667777654 3578888877652211111110111122222 5677777764 2358899988732
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~ 404 (496)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 187 ---W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 187 ---WKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp ---EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred ---EEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCC
Confidence 2222111111111122222 33 367777653 3467888876
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.67 E-value=4.7 Score=38.88 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=21.1
Q ss_pred ceeeeecCCCCceEEecCCCcEEEEecCC
Q 010997 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQD 227 (496)
Q Consensus 199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~ 227 (496)
.++|+|.|+|+++++-...+.|.+++..+
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 47999999998776654445788887543
No 329
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.55 E-value=5.8 Score=43.32 Aligned_cols=203 Identities=6% Similarity=0.013 Sum_probs=106.1
Q ss_pred CceeEEEecC---CCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997 141 GEVNRIRELP---QNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (496)
Q Consensus 141 ~~V~~l~~~p---~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~ 207 (496)
..+.|++... +...+|+.|+ ..|.|.+|++... +..........++|++|+-- +
T Consensus 829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~------------kL~lv~~~~v~g~v~al~~~-~ 895 (1158)
T 3ei3_A 829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG------------KLQTVAEKEVKGAVYSMVEF-N 895 (1158)
T ss_dssp EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT------------EEEEEEEEEESSCEEEEEEE-T
T ss_pred cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC------------EEEEEEEEEcCCcCEEEeee-C
Confidence 3455555332 3356888886 3578999998733 22222222223467777643 3
Q ss_pred CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (496)
Q Consensus 208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (496)
| +|++|- ..+|++|++...... ..-..+-..|..+...
T Consensus 896 g-~Lla~i-g~~l~vy~l~~~~~L----------------------------------------~~~~~~~~~i~~~~l~ 933 (1158)
T 3ei3_A 896 G-KLLASI-NSTVRLYEWTTEKEL----------------------------------------RTECNHYNNIMALYLK 933 (1158)
T ss_dssp T-EEEEEE-TTEEEEEEECTTSCE----------------------------------------EEEEEECCCSCEEEEE
T ss_pred C-EEEEEc-CCEEEEEECCCCceE----------------------------------------EEEeeccccEEEEEEe
Confidence 4 454443 479999998643210 0000001112222222
Q ss_pred cCCCceEEEEcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC-CCCc
Q 010997 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GSPI 365 (496)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~~ 365 (496)
..+ ++++.|..-..|.++..+......... ...+...++++.+-. ...++.+..+|.|.++.......... +..+
T Consensus 934 ~~~-~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L 1010 (1158)
T 3ei3_A 934 TKG-DFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDSAATTDEERQHL 1010 (1158)
T ss_dssp EET-TEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECTTCCSTTGGGBE
T ss_pred ccC-CEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCCCCCCcccccee
Confidence 234 578888777777776554433212221 123556788888864 45788899999999987664221110 1111
Q ss_pred e-EeccC-CCCEEEEE---EcCCC--------CCEEEEEeCCCcEEEEE
Q 010997 366 N-KFEGH-SAAVLCVQ---WSPDK--------SSVFGSSAEDGLLNIWD 401 (496)
Q Consensus 366 ~-~~~~h-~~~i~~l~---~sp~~--------~~llas~~~dg~i~iwd 401 (496)
. .-.-| ...|+++. +.+.+ ...++-++.+|.|-+.-
T Consensus 1011 ~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1011 QEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred eeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 1 11122 44567765 33322 22344667788877653
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.50 E-value=0.69 Score=39.43 Aligned_cols=105 Identities=6% Similarity=0.087 Sum_probs=62.2
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCC--------eEEEEecCCCCcEEEEEcCCCcEEE
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD--------LHCVDWNPLDDNLILTGSADNSVRM 350 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------v~~i~~sp~~~~~l~sgs~dg~i~i 350 (496)
..+.+++|+|++ .+.+. .+|.+.-.+..+.... .-+ +.... ..++.|.| ++.+.++ .||.|.-
T Consensus 41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~--~W~-~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDND--NWM-GRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC--CHH-HHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEE
T ss_pred ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcc--ccc-ccccEecccccccceEEEECC-CCCEEEe--CCCEEEE
Confidence 367799999987 54444 7787766665443311 111 11222 47899999 8888887 5698887
Q ss_pred EeCCCCCCCCCCCCce---Ee-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997 351 FDRRNLTSNGVGSPIN---KF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (496)
Q Consensus 351 wd~~~~~~~~~~~~~~---~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~ 398 (496)
++..+... ..-+. .+ ..-=..+..|.|.|+|. |.|.. |+.+.
T Consensus 112 ~~pP~~~~---~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~ly 157 (236)
T 1tl2_A 112 ASPPQSDT---DNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFY 157 (236)
T ss_dssp ESCCCSTT---CCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEE
T ss_pred eCCCcCCC---CceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEE
Confidence 77533111 11111 11 11114679999999997 66544 77743
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.98 E-value=2 Score=39.05 Aligned_cols=61 Identities=8% Similarity=0.143 Sum_probs=34.8
Q ss_pred ceEEEEcC-C-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC-----cEEEEeCCC
Q 010997 292 QEFCSVGD-D-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRN 355 (496)
Q Consensus 292 ~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg-----~i~iwd~~~ 355 (496)
.+++.|+. + ..+.+||+.+.+...+...........++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCC
Confidence 56777765 2 4688999887652222111111112223333 567778877654 588899876
No 332
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.76 E-value=7.3 Score=37.52 Aligned_cols=119 Identities=8% Similarity=0.146 Sum_probs=63.6
Q ss_pred eeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec------cCCCCeEEEEecCC---CCcEEEEEc
Q 010997 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNPL---DDNLILTGS 343 (496)
Q Consensus 273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~i~~sp~---~~~~l~sgs 343 (496)
.+...-.....|+|.|++ .++++-...+.|++++...+....+..+. .....+..|+|+|. ++.+.++-+
T Consensus 21 ~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 21 VILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp EEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 333334567799999999 66666555457888876544422222221 12456789999993 344444433
Q ss_pred C------------CCcEEEEeCCCCCCC-CCCCCce-Eec-cCCCCEEEEEEcCCCCCEEEEEeC
Q 010997 344 A------------DNSVRMFDRRNLTSN-GVGSPIN-KFE-GHSAAVLCVQWSPDKSSVFGSSAE 393 (496)
Q Consensus 344 ~------------dg~i~iwd~~~~~~~-~~~~~~~-~~~-~h~~~i~~l~~sp~~~~llas~~~ 393 (496)
. ...|.-|+....... ...+.+. .+. ........|+|.|+|. |+++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd 163 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD 163 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECC
Confidence 2 234555554321000 0001111 122 1123578999999997 6656543
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.75 E-value=6.1 Score=36.57 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=36.2
Q ss_pred CCEEEEEEcC-------CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997 373 AAVLCVQWSP-------DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 445 (496)
Q Consensus 373 ~~i~~l~~sp-------~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l 445 (496)
..+..++|.. ++. +|++.-..+.|...++... ... .....+.+....+.++++.|+|..+
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~-~~~-----------~~~~~~~~~~~rp~~v~~~pdG~ly 337 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGD-KVT-----------EDGRILTDRGQRIRDVRTGPDGYLY 337 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETT-EEE-----------EEEEESGGGCCCEEEEEECTTSCEE
T ss_pred cCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCC-eEe-----------eeEEcccCCCCceeEEEECCCCcEE
Confidence 4677888864 344 5656656777777777642 111 0001112223478999999988744
Q ss_pred EE
Q 010997 446 VV 447 (496)
Q Consensus 446 ~~ 447 (496)
++
T Consensus 338 v~ 339 (353)
T 2g8s_A 338 VL 339 (353)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.23 E-value=3.5 Score=37.42 Aligned_cols=61 Identities=15% Similarity=0.313 Sum_probs=33.6
Q ss_pred ceEEEEcC------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCC
Q 010997 292 QEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRN 355 (496)
Q Consensus 292 ~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~ 355 (496)
.+++.|+. -..+.+||+.+.+...+...........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCC
Confidence 56677664 23589999987653222111111111222333 56777777654 3577889876
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.70 E-value=6.2 Score=36.38 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=26.8
Q ss_pred CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC------CCcEEEEeC
Q 010997 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDR 353 (496)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~------dg~i~iwd~ 353 (496)
..+.+||..+.+...+.........-.+++.. ++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 57899999877633222221111110223332 4667777764 345777876
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.28 E-value=13 Score=38.17 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCCceEEEEcCCC--eEEEEEccCCCccceee---eccCCCCeEEEEecCCCCcEEEEEcC--C-----CcEEEEeCCC
Q 010997 289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSA--D-----NSVRMFDRRN 355 (496)
Q Consensus 289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~---~~~~~~~v~~i~~sp~~~~~l~sgs~--d-----g~i~iwd~~~ 355 (496)
++ .+++.|+.++ .+.+||..+........ .........++.+....+.+++.|+. + ..+.+||+.+
T Consensus 500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 500 DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred CC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 44 6777777654 68999998765322211 11112222345555523677788876 2 3588999887
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.80 E-value=17 Score=33.50 Aligned_cols=252 Identities=11% Similarity=0.125 Sum_probs=124.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE----ecCCCCcceeeeecCC---CCce
Q 010997 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL----TGHQDNAEFALAMCPT---EPYV 211 (496)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l----~~h~~~~v~~l~~~p~---~~~l 211 (496)
--.....|+|.| ++.++++--..|.|++++...+.. ..+..+ ..... ....|+++|+ +.+|
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~----------~~v~~~~~v~~~g~~-GllGia~~Pdf~~~g~l 97 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK----------TELGEVPGVSPSGEG-GLLGIALSPDYASDHMV 97 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE----------EEEEECTTCCCBTTB-SEEEEEECTTHHHHCEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE----------eeecccCceeecCCC-CceeeEeccccccCCEE
Confidence 345678999999 788887766589999998654411 011111 11122 3579999996 3334
Q ss_pred EEe---cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC-eeeee-cCCCceeEEEE
Q 010997 212 LSG---GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP-RGIYN-GHEDTVEDVTF 286 (496)
Q Consensus 212 ~sg---~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~h~~~v~~l~~ 286 (496)
... ..++.|.-|.+........ .....+. +..+. ........|.|
T Consensus 98 Yv~yt~~~~~~v~R~~~~~~~~~~~------------------------------~~~~~~~i~~~~p~~~~H~g~~l~f 147 (347)
T 3das_A 98 YAYFTSASDNRIVRMLYDEKKPSGE------------------------------QLGAPDTVFRGIPKGVIHNGGRIAF 147 (347)
T ss_dssp EEEEECSSSEEEEEEEBCTTSCTTC------------------------------CBCCCEEEEEEECCCSSCCCCCEEE
T ss_pred EEEEecCCCCEEEEEEeCCCCcccc------------------------------cCCCcEEEEEcCCCCCCccCccccC
Confidence 332 2344555555443110000 0000000 00111 11123467999
Q ss_pred ccCCCceEEEEcC-------------CCeEEEEEccCCC---cc---ceeeeccCCCCeEEEEecCCCCcEEEEEc-CCC
Q 010997 287 CPSSAQEFCSVGD-------------DSCLILWDARVGT---SP---VIKVEKAHDADLHCVDWNPLDDNLILTGS-ADN 346 (496)
Q Consensus 287 ~~~~~~~l~s~~~-------------dg~i~iwd~~~~~---~~---~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg 346 (496)
.|++ .++++.++ -|.|.-.+....- .+ ......+|. ....++|+| ++.++++=. .|+
T Consensus 148 gpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp-~G~L~~~d~g~~~ 224 (347)
T 3das_A 148 GPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDD-KQRLFASEFGQDT 224 (347)
T ss_dssp CTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECT-TCCEEEEECCSSS
T ss_pred CCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECC-CCCEEEEecCCCC
Confidence 9998 66666542 2444444443210 00 011122443 356889999 777666532 233
Q ss_pred cEEEEeCCCCCC------------CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC
Q 010997 347 SVRMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (496)
Q Consensus 347 ~i~iwd~~~~~~------------~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~ 414 (496)
-=.|--+..... .....++..+..+......++|.. +. +|...-..+.|....+...+. .
T Consensus 225 ~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~-~----- 296 (347)
T 3das_A 225 WDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAA-A----- 296 (347)
T ss_dssp CEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-TE-EEEEESTTCSEEEEEEETTEE-S-----
T ss_pred CceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-Cc-eeeccccCCEEEEEEecCCce-e-----
Confidence 222222221100 001234445544435677888874 44 665665566666666654211 0
Q ss_pred CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997 415 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448 (496)
Q Consensus 415 ~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s 448 (496)
...+ ..+.+....+.+|+..|+|..++++
T Consensus 297 ---~~~e--~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 297 ---ADPQ--AFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp ---SCCE--EESTTTSSCEEEEEEEETTEEEEEE
T ss_pred ---cceE--EeecCCCCCccEEEECCCCcEEEEE
Confidence 0111 1233445689999999988654443
No 338
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=87.50 E-value=18 Score=33.44 Aligned_cols=63 Identities=10% Similarity=-0.005 Sum_probs=40.4
Q ss_pred CCeEEEEecC------CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc--eEe-ccCCCCEEEEEEcCCCCCEEEEEe
Q 010997 324 ADLHCVDWNP------LDDNLILTGSADNSVRMFDRRNLTSNGVGSPI--NKF-EGHSAAVLCVQWSPDKSSVFGSSA 392 (496)
Q Consensus 324 ~~v~~i~~sp------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~~~-~~h~~~i~~l~~sp~~~~llas~~ 392 (496)
.....++|.. .++.++++.-..+.|...++... +... ..+ .+....+..+++.|+|. |+++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~-----g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN-----MEVRKISTFFKNVFGRLRDVVIDDDGG-ILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG-----GCEEEEEEECTTTSCCEEEEEECTTSC-EEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC-----CcccceeeeccCCCCCeeEEEECCCCc-EEEEEe
Confidence 4577888842 25777777777788888888741 1111 222 22245789999999996 665553
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=86.05 E-value=4.5 Score=37.32 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=15.5
Q ss_pred CCcEEEEEeC-C---------CcEEEEeCCCC
Q 010997 152 NTKIVATHTD-S---------PDVLIWDVEAQ 173 (496)
Q Consensus 152 ~~~~lat~~~-d---------g~i~iwd~~~~ 173 (496)
++.+++.|+. + ..+.+||..+.
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5667777765 2 46889998775
No 340
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.82 E-value=28 Score=32.45 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=35.9
Q ss_pred CceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCccceeeec----------------cCCCCeEEEEecCCCCcEEEE
Q 010997 279 DTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEK----------------AHDADLHCVDWNPLDDNLILT 341 (496)
Q Consensus 279 ~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~i~~sp~~~~~l~s 341 (496)
..|.++++.|.+ +..+..++..+.|...+-.......+.... .....+.+|.++|.+...|..
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 357888888742 345666666665554432111111111000 122457899999844444455
Q ss_pred EcCCCcEEE
Q 010997 342 GSADNSVRM 350 (496)
Q Consensus 342 gs~dg~i~i 350 (496)
+..++.|..
T Consensus 195 g~~~ggl~~ 203 (394)
T 3b7f_A 195 GMSSGGVFE 203 (394)
T ss_dssp EEETBEEEE
T ss_pred EECCCCEEE
Confidence 544443433
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=83.42 E-value=16 Score=37.47 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCcEEEEEeCCC------cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC--cEEEE
Q 010997 152 NTKIVATHTDSP------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVVLW 223 (496)
Q Consensus 152 ~~~~lat~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg--~i~iw 223 (496)
++.+++.|+.++ .+.+||..+..-. ....+.... .-.+++...++..++.|+.++ .+.+|
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~----------~~~~~p~~R--~~h~~~~~~~~~iyv~GG~~~~~~v~~y 518 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWS----------MIKSLSHTR--FRHSACSLPDGNVLILGGVTEGPAMLLY 518 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEE----------ECCCCSBCC--BSCEEEECTTSCEEEECCBCSSCSEEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEE----------ECCCCCCCc--ccceEEEEcCCEEEEECCCCCCCCEEEE
Confidence 556777776532 5788888765111 000011100 112223323677788887655 68888
Q ss_pred ecCCc
Q 010997 224 SIQDH 228 (496)
Q Consensus 224 d~~~~ 228 (496)
|..+.
T Consensus 519 d~~t~ 523 (695)
T 2zwa_A 519 NVTEE 523 (695)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 88764
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=81.60 E-value=14 Score=33.87 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=34.2
Q ss_pred ceEEEEcCCCeEEEEEccCCCccceeeeccCC--C-----CeEEEEec---C-CCCcEEEEEcCCCcEEEEe
Q 010997 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--A-----DLHCVDWN---P-LDDNLILTGSADNSVRMFD 352 (496)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~-----~v~~i~~s---p-~~~~~l~sgs~dg~i~iwd 352 (496)
..+++|+.+|.+...|+++++ .+..+.... . ...|.... . ..+..++.|..+..+.+.+
T Consensus 112 g~Vy~Gs~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 112 EKVYTGSMRTIMYTINMLNGE--IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp EEEEECEEEEEEEEEETTTCC--EEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred CEEEEEecCCEEEEEECCCCc--EEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 578999999999999999998 444442211 0 01111111 0 1245677777777777766
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.75 E-value=25 Score=33.82 Aligned_cols=119 Identities=9% Similarity=0.136 Sum_probs=62.7
Q ss_pred CCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---------cCCCCEEEEEEcCC---CCCEEEE
Q 010997 324 ADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPD---KSSVFGS 390 (496)
Q Consensus 324 ~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---------~h~~~i~~l~~sp~---~~~llas 390 (496)
.....|+|.| ++. .|+++...|.|++++...... ...+..+. ........|+|+|+ ..+|+++
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 4567899999 774 344456789999997542100 11222221 12457889999996 3346655
Q ss_pred EeCC------------CcEEEEECCCCCcccCCCCCCCCCCCeeEEEec--CCCCCcceEEecCCCCcEEEEecCC
Q 010997 391 SAED------------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA--GHRDKVVDFHWNASDPWTVVSVSDD 452 (496)
Q Consensus 391 ~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~~~~~p~~~~l~~s~s~d 452 (496)
-+.+ ..|.-|.+........ +....+.++... .....-..|+|.|++ +|+++.++.
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~-----d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~ 159 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQV-----DLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDG 159 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSB-----CGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCcc-----CCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCC
Confidence 4421 1344455543110000 001123333322 222345789999987 677776653
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=77.90 E-value=24 Score=31.73 Aligned_cols=101 Identities=11% Similarity=0.095 Sum_probs=56.1
Q ss_pred EEccCCCceEEEEcCC-------------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc--CC--Cc
Q 010997 285 TFCPSSAQEFCSVGDD-------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--AD--NS 347 (496)
Q Consensus 285 ~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~d--g~ 347 (496)
-+++++..+..+...+ ..|+..++..... .... ... +..|++ .+..|+-.. .+ ..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~---~~~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLD---PDP--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEE---CSC--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEee---cCC--ccEEEE-eCCEEEEEeecCCCCce
Confidence 4577774444444333 4677777766552 2211 112 235667 666666554 33 44
Q ss_pred EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
|...++.. .....+..+.. .+|+|+++.|+.+......|.+-++..
T Consensus 131 Iy~~~~dG-------s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 131 LYRIRIDG-------EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEEETTS-------CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEEEECCC-------CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 55555553 33444544433 457888888776655467788877765
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.66 E-value=33 Score=36.53 Aligned_cols=36 Identities=6% Similarity=0.025 Sum_probs=29.3
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCcccccc
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA 233 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~ 233 (496)
.+.+++..++..++++-+.|+++|+|++.++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 355677777888999999999999999998866443
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=69.44 E-value=1.1e+02 Score=31.51 Aligned_cols=109 Identities=9% Similarity=0.112 Sum_probs=62.1
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceee-ecc----CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKA----HDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~----~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~ 353 (496)
..|.++....++ .+ ..|+.+ -|..+|..+.. .... ... ....|.++...+ ++..|..|+. +-+..+|.
T Consensus 146 ~~i~~i~~d~~g-~l-Wigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~ 218 (758)
T 3ott_A 146 NTIYSIIRTKDN-QI-YVGTYN-GLCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFP 218 (758)
T ss_dssp SCEEEEEECTTC-CE-EEEETT-EEEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEET
T ss_pred CeEEEEEEcCCC-CE-EEEeCC-CHhhCccCCCc--eEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcC
Confidence 357777777666 43 334444 47778876544 1111 111 123488888876 5565555554 45888887
Q ss_pred CCCCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 354 RNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 354 ~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.+ .. +..+. .....|.++...+++. |. .|+.+ -+.+++...
T Consensus 219 ~~------~~-~~~~~~l~~~~i~~i~~d~~g~-lW-igT~~-Gl~~~~~~~ 260 (758)
T 3ott_A 219 ST------GQ-IKQTEAFHNNSIKSLALDGNGD-LL-AGTDN-GLYVYHNDT 260 (758)
T ss_dssp TT------TE-EEEEEEEEEEEEEEEEECTTCC-EE-EEETT-EEEEECCTT
T ss_pred CC------Ce-EEeccCCCCCeEEEEEEcCCCC-EE-EEeCC-ceeEEecCC
Confidence 65 22 22221 1234588888888887 44 44544 577888755
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.61 E-value=1.1e+02 Score=32.64 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=25.8
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (496)
Q Consensus 373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~ 405 (496)
..+.+++..++..++ .+-+.|+++|+|++.++
T Consensus 236 ~~~~~~~~~~~~~~l-ftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 236 NTIISMIFLSTYNVL-VMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp TCEEEEEEETTTTEE-EEEETTCEEEEEETTTT
T ss_pred ceEEEEeecCCCcEE-EEEECCCEEEEEECCCC
Confidence 356778888887755 48889999999999985
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=66.93 E-value=4.7 Score=39.56 Aligned_cols=98 Identities=12% Similarity=0.156 Sum_probs=62.0
Q ss_pred eEEEEEccC----CCccceeeeccCCCCeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCCC---CCC----CCCceEec
Q 010997 302 CLILWDARV----GTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTS---NGV----GSPINKFE 369 (496)
Q Consensus 302 ~i~iwd~~~----~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~dg~i~iwd~~~~~~---~~~----~~~~~~~~ 369 (496)
.|.+.|.+. +. ... .+..-......+..+| ++.+++. |-.+.++.++|++.... ... ...+....
T Consensus 299 gv~ViD~~~~~~~~~-~~~-~~iP~pksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDS-KFT-RYVPVPKNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp CCCEEECSCBTTBCC-SSE-EEEEESSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred CeeEEccccccccCC-ceE-EEEeCCCCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 467777765 22 122 2223345566788999 7776655 55688999999985211 000 01112222
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
-.-.....+|.++| +.+.|--.|..|.-|++..
T Consensus 376 -~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp -CCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred -CCCcccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence 24456789999999 4676777899999999976
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=66.43 E-value=82 Score=29.13 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=34.6
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc-----C--------CCCeEEEEecCCCCcEEEEEcCC
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-----H--------DADLHCVDWNPLDDNLILTGSAD 345 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~--------~~~v~~i~~sp~~~~~l~sgs~d 345 (496)
..+.+|.+.|..+..+..+..++.|...+-. ++ ....... + ...+.+|+++|.+...|..+...
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~--tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~ 253 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT--DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC 253 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESST-TS--SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCC-CC--CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC
Confidence 4678899988543445555444444433211 11 1111100 0 13588999998545677777655
Q ss_pred C
Q 010997 346 N 346 (496)
Q Consensus 346 g 346 (496)
+
T Consensus 254 g 254 (394)
T 3b7f_A 254 G 254 (394)
T ss_dssp E
T ss_pred e
Confidence 5
No 350
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=64.40 E-value=1.4e+02 Score=30.98 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=23.7
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWD 169 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd 169 (496)
.+.|.+|+++|.++..+..++..|.|...+
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~ 43 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD 43 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec
Confidence 468999999997778888888777766554
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=54.25 E-value=62 Score=31.90 Aligned_cols=77 Identities=9% Similarity=-0.063 Sum_probs=56.2
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc----------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~ 347 (496)
....-.+.++|+|..++++|-.+.++.++|++.-.. ..+.....-.-.....+|.+ +++...|-..|..
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecce
Confidence 344567889999977778888899999999984210 01111122345677899999 8877778889999
Q ss_pred EEEEeCCC
Q 010997 348 VRMFDRRN 355 (496)
Q Consensus 348 i~iwd~~~ 355 (496)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999875
No 352
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=51.49 E-value=2.1e+02 Score=29.16 Aligned_cols=217 Identities=7% Similarity=0.087 Sum_probs=111.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (496)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~ 219 (496)
...|++|.-.. ++. |=.|+.+| +..||-..... .. .. ..-....|.++....++ .|..|+.+|
T Consensus 21 ~n~V~~I~qD~-~G~-lWigT~~G-L~ryDG~~~~~---~~-----~~----~~~~~~~i~~i~~d~~g-~lWigT~~G- 83 (758)
T 3ott_A 21 ASVVSCFLQDS-EGL-IWIGSNKG-LFSYDGYSTQQ---HF-----TY----GENNNTRIYCGVIIDNT-YLYMGTDNG- 83 (758)
T ss_dssp CCCEEEEEECT-TSC-EEEEESSC-EEEECSSCEEE---CS-----CT----TSTTSSCEEEEEEETTT-EEEEEETTE-
T ss_pred cceEEEEEECC-CCC-EEEEECCC-ccccCCCceEE---EE-----cc----CCCCCceEEEEEEcCCC-cEEEEeCCC-
Confidence 45689998776 553 44456666 66677432100 00 00 00112247777766665 455555555
Q ss_pred EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (496)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (496)
+..+|..+..... + . ......|.++.. .++ . |..++.
T Consensus 84 l~~yd~~~~~f~~---~-----------------------------------~--~~~~~~i~~i~~-~~g-~-lWigt~ 120 (758)
T 3ott_A 84 ILVYNYRADRYEQ---P-----------------------------------E--TDFPTDVRTMAL-QGD-T-LWLGAL 120 (758)
T ss_dssp EEEEETTTTEECC---C-----------------------------------S--CCCCSCEEEEEE-ETT-E-EEEEET
T ss_pred eEEEeCCCCEEEC---c-----------------------------------c--cCCCceEEEEEe-cCC-c-EEEEcC
Confidence 7788876532210 0 0 001123566554 344 3 445555
Q ss_pred CCeEEEEEccCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc----
Q 010997 300 DSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---- 370 (496)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---- 370 (496)
+ -|..||..+.. . ..+ ......|.++.... ++.+.+ |+.+| |..+|..+ .. +..+..
T Consensus 121 ~-Gl~~~~~~~~~--~-~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~G-l~~~~~~~------~~-~~~~~~~~~~ 186 (758)
T 3ott_A 121 N-GLYTYQLQSRK--L-TSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYNG-LCRYIPSN------GK-FEGIPLPVHS 186 (758)
T ss_dssp T-EEEEEETTTCC--E-EEECHHHHCCSCSCEEEEEECT-TCCEEE-EETTE-EEEEETTT------TE-EEEECCCCCT
T ss_pred C-cceeEeCCCCe--E-EEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCCC-HhhCccCC------Cc-eEEecCCCcc
Confidence 5 68888987655 2 221 01235688888877 565544 44454 77788765 22 222211
Q ss_pred --CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997 371 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 447 (496)
Q Consensus 371 --h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~ 447 (496)
....|.++...+++..|. .|.. +-+..+|.... .. .....+. ...|.++.-..++...++
T Consensus 187 ~~~~~~i~~i~~d~~~~~lW-igt~-~Gl~~~~~~~~-~~------------~~~~~l~--~~~i~~i~~d~~g~lWig 248 (758)
T 3ott_A 187 SQSNLFVNSLLEDTTRQCVW-IGTE-GYLFQYFPSTG-QI------------KQTEAFH--NNSIKSLALDGNGDLLAG 248 (758)
T ss_dssp TCSSCCEEEEEEETTTTEEE-EEEE-EEEEEEETTTT-EE------------EEEEEEE--EEEEEEEEECTTCCEEEE
T ss_pred ccccceeEEEEEECCCCEEE-EEEC-CCCeEEcCCCC-eE------------EeccCCC--CCeEEEEEEcCCCCEEEE
Confidence 123488888887766444 3443 45778887652 10 1111111 235777877776665554
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=49.93 E-value=54 Score=29.93 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=62.1
Q ss_pred CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (496)
Q Consensus 209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (496)
..++.++.||.|.-.|..+++..+...... ..+......... +
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-----------------------------~~p~~~~~~~~~--------~ 53 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-----------------------------FQPLIEIQEPSR--------L 53 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG-----------------------------SCCSEECCCSCT--------T
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc-----------------------------cCCcEEecCCcc--------c
Confidence 467888899999999998887655443310 000000000000 1
Q ss_pred CCCceEEEE-cCCCeEEEEEccCCCccceeeec--cCCCCeEEEEecC--------CCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 289 SSAQEFCSV-GDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNP--------LDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 289 ~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp--------~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
.+...++.. +.||.|..+|..++......... ...+++.. .-.| ..+..+.+|+.+|.+...|+++
T Consensus 54 ~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t-- 130 (339)
T 2be1_A 54 ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN-- 130 (339)
T ss_dssp TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTT--
T ss_pred cCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCC--
Confidence 121333333 57888888887665421111100 11222221 1000 0356788899999999999988
Q ss_pred CCCCCCCceEec
Q 010997 358 SNGVGSPINKFE 369 (496)
Q Consensus 358 ~~~~~~~~~~~~ 369 (496)
++.+.++.
T Consensus 131 ----G~~~W~~~ 138 (339)
T 2be1_A 131 ----GEIISAFG 138 (339)
T ss_dssp ----CCEEEEES
T ss_pred ----CcEEEEEe
Confidence 66666654
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=47.10 E-value=2.3e+02 Score=28.16 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCcEEEEEcCC------------CcEEEEeCCCCCCCCCCCCceEeccC-CCCEEEEEEcCCCCCEEEE
Q 010997 325 DLHCVDWNPLDDNLILTGSAD------------NSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGS 390 (496)
Q Consensus 325 ~v~~i~~sp~~~~~l~sgs~d------------g~i~iwd~~~~~~~~~~~~~~~~~~h-~~~i~~l~~sp~~~~llas 390 (496)
..-.|+|+| .+.+++.-..+ ..+.+.+..+ ++..+.+.+. ...++.++|+|+++.||+.
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~------g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT------GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT------CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCC------CeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346789999 78766654332 2344445444 4444434443 4679999999999988754
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.16 E-value=24 Score=38.51 Aligned_cols=36 Identities=6% Similarity=0.025 Sum_probs=28.9
Q ss_pred cceeeeecCCCCceEEecCCCcEEEEecCCcccccc
Q 010997 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA 233 (496)
Q Consensus 198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~ 233 (496)
.+.+++..++..++++-+.|+++|+|++.++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 345666677888999999999999999998866443
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.85 E-value=54 Score=32.61 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCceEEecCCCCcceeeeecCCCCceEEe
Q 010997 186 RPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (496)
Q Consensus 186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg 214 (496)
+....+.++.+.++++++|+||++.|+..
T Consensus 520 ~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 520 EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 44556778877789999999998876654
No 357
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=40.16 E-value=2e+02 Score=25.52 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=54.7
Q ss_pred EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC--CcEEEEeCCCCCCCCC
Q 010997 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD--NSVRMFDRRNLTSNGV 361 (496)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d--g~i~iwd~~~~~~~~~ 361 (496)
..|++++..++.+......|...++..... ..... .... ..+.| ++.+|+-.... ..|..-++..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~--~~l~~---~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG------ 216 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSE--ALFYD---CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINN------ 216 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEE--EEEEC---SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSS------
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCE--EEEeC---CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECCC------
Confidence 345677755555655467788878765542 22222 2222 34568 56665544333 3565656654
Q ss_pred CCCceEeccCCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCC
Q 010997 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEK 404 (496)
Q Consensus 362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~ 404 (496)
.....+.. ..+ ..|+|++..|+.+.. ..+.|..-++..
T Consensus 217 -~~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 217 -PNPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp -CCCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred -CCeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 33344432 233 347888887765432 245566666654
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=40.01 E-value=2.3e+02 Score=26.23 Aligned_cols=122 Identities=11% Similarity=0.168 Sum_probs=65.3
Q ss_pred CceeEEEEc---cC----CCceEEEEcCCCeEEEEEccCCCccceeeec--------------c----CCCCeEEEEecC
Q 010997 279 DTVEDVTFC---PS----SAQEFCSVGDDSCLILWDARVGTSPVIKVEK--------------A----HDADLHCVDWNP 333 (496)
Q Consensus 279 ~~v~~l~~~---~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~----~~~~v~~i~~sp 333 (496)
..+.++.+. |. +....++=+..+.|.++|+.+++. .+... + -...|..|+++|
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s--wRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp 229 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS--WNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD 229 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE--EEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE--EEEccCCCccccCcceEECCEEeEeccCceEEEecC
Confidence 456677766 21 212344444578899999998762 11110 0 024788899998
Q ss_pred CC----CcEEEEEcCCC-cEEEEeCCCCCCCCCCCCceEeccC--CCCEEEEEEc-CCCCCEEEEEeCCCcEEEEECCC
Q 010997 334 LD----DNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQWS-PDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 334 ~~----~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~h--~~~i~~l~~s-p~~~~llas~~~dg~i~iwd~~~ 404 (496)
+ +..|.-....+ .+.-...+.+........+..+... ...-..+++. .+|. |+.+--....|..|+...
T Consensus 230 -~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 230 -RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred -CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence 4 55555554444 3333331111111111223323211 1334456775 4554 777777788999999875
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=34.42 E-value=2.3e+02 Score=24.67 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=78.8
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~ 358 (496)
..|..|+..... .+.-. ||.|..|=...... +- ........|..|+... ...++. . ||.|..|-......
T Consensus 102 ~~v~~ia~G~~h---s~al~-~G~v~~wG~n~~gq-lg-~~~~~~~~i~~i~~G~--~~~~~l-~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 102 SGVDAIAAGAWA---SYALK-DGKVIAWGDDSDGQ-TT-VPAEAQSGVTALDGGV--YTALAV-K-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp SSEEEEEEETTE---EEEEE-TTEEEEEECCTTST-TS-CCGGGGSSEEEEEECS--SEEEEE-E-TTEEEEEECCTTST
T ss_pred CCeEEEECcCCE---EEEEe-CCeEEEecCCCCCc-CC-CCccCCCCeEEEEccc--CEEEEE-E-CCEEEEecCCCCCC
Confidence 357777776543 33334 89999997654321 11 1112335677777654 333333 3 79999998765321
Q ss_pred CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438 (496)
Q Consensus 359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 438 (496)
. +.+. .-...|..|+..... .++. .||.|..|=....++.- .|.. -...|..++-
T Consensus 172 l--g~p~----~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg--------~p~~-------~~~~v~~i~~ 226 (282)
T 3qhy_B 172 T--TVPA----EAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTT--------VPTE-------ALSGVSAIAS 226 (282)
T ss_dssp T--SCCG----GGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTC--------CCGG-------GGSSCCEEEE
T ss_pred C--CCce----ecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCC--------CCcc-------cCCCceEEEc
Confidence 1 1111 113567788765543 3444 49999999876643321 1111 1124666665
Q ss_pred cCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469 (496)
Q Consensus 439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~ 469 (496)
... ..++++ ||.|..|--..
T Consensus 227 G~~-h~~al~----------~g~v~~wG~n~ 246 (282)
T 3qhy_B 227 GEW-YSLALK----------NGKVIAWGSSR 246 (282)
T ss_dssp CSS-CEEEEE----------TTEEEEESTTC
T ss_pred CCC-EEEEEE----------CCEEEEecCCC
Confidence 432 222322 38999998764
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.10 E-value=1.3e+02 Score=29.77 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=34.8
Q ss_pred ceeEEEecCCCCcEEE-EEeC-----------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997 142 EVNRIRELPQNTKIVA-THTD-----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (496)
Q Consensus 142 ~V~~l~~~p~~~~~la-t~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~ 209 (496)
....|.|.+ ++.+.+ +=.. ...|..++..++ +....+.+.....+++++|+||++
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG------------el~~fl~~P~~aEpnGiafSPD~k 543 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG------------EIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC------------CEEEEEECCTTCEEEEEEECTTSS
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCC------------eEEEEEeCCCCccccCCEECCCCC
Confidence 456777887 566555 3211 113444444444 333444554444679999999998
Q ss_pred ceEEe
Q 010997 210 YVLSG 214 (496)
Q Consensus 210 ~l~sg 214 (496)
.|+.+
T Consensus 544 tLfV~ 548 (592)
T 4a9v_A 544 TLFVG 548 (592)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
No 361
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=32.97 E-value=1.5e+02 Score=29.18 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=40.2
Q ss_pred CCeEEEEecCCCCcEEEEEcC------------CCcEEEEeCCCCCCCCCCCCceEeccC-CCCEEEEEEcCCCCCEEEE
Q 010997 324 ADLHCVDWNPLDDNLILTGSA------------DNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGS 390 (496)
Q Consensus 324 ~~v~~i~~sp~~~~~l~sgs~------------dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~~i~~l~~sp~~~~llas 390 (496)
.....|.|++ ++.+.+.-.. ...|..++..+ +.....+... ...++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t------Gel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT------GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT------CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCC------CeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4567899999 7777663221 12456666554 4443334332 3568999999999988866
Q ss_pred EeC
Q 010997 391 SAE 393 (496)
Q Consensus 391 ~~~ 393 (496)
.-.
T Consensus 549 vQH 551 (592)
T 4a9v_A 549 IQH 551 (592)
T ss_dssp EES
T ss_pred EeC
Confidence 543
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=32.72 E-value=2.8e+02 Score=24.99 Aligned_cols=160 Identities=11% Similarity=0.106 Sum_probs=87.6
Q ss_pred CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (496)
Q Consensus 207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (496)
+..+++.++.+|.|+--.+........ .......+.. .+.+..+..
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r---------------------------------~G~~~i~lke-~D~lv~~~~ 153 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRS---------------------------------GGIVAVNLRD-NDELVGAVL 153 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCS---------------------------------SCEESCBCCT-TCCEEEEEE
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhcccc---------------------------------CceEEEEECC-CCEEEEEEE
Confidence 467899999999999988764321100 0000012222 234444444
Q ss_pred ccCCCceEEEEcCCCeEEEEEcc--CCC---cc----ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997 287 CPSSAQEFCSVGDDSCLILWDAR--VGT---SP----VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (496)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~--~~~---~~----~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~ 357 (496)
.... ..++..+..|.+..+... .-. .. ....+ .....|.++...+ .+..++..+..|.++.-.+....
T Consensus 154 ~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~ 230 (327)
T 3uc1_A 154 CSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYP 230 (327)
T ss_dssp ECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSC
T ss_pred ecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHcc
Confidence 4444 457777788888887766 211 00 00111 2345676666655 56688899999999988876543
Q ss_pred CC---CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997 358 SN---GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (496)
Q Consensus 358 ~~---~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~ 404 (496)
.. ..+.....+..-.+.+..+........++ ..+.+|.+.-++...
T Consensus 231 ~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~-l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 231 VQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELY-AVTSGGGVIRTAARQ 279 (327)
T ss_dssp BCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE-EEEGGGCEEEEEGGG
T ss_pred ccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEE-EEcCCCeEEEEehhh
Confidence 21 11222223322234455554444344344 455677777777655
No 363
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=32.62 E-value=1.7e+02 Score=30.29 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc-------CCCCeEEEEecCCCCcEEEEEc
Q 010997 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-------HDADLHCVDWNPLDDNLILTGS 343 (496)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~i~~sp~~~~~l~sgs 343 (496)
.+.|.+|.++|..+..++.++..+.|...+= .++ .-..... ....|.+|+++|.+...+..+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~--tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTS--KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTT--EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCC--CeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 4589999999987777888887777665542 222 1111111 1246999999984445554443
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.37 E-value=4.3e+02 Score=28.66 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=20.8
Q ss_pred CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997 432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470 (496)
Q Consensus 432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~ 470 (496)
.+.+++..++..+ +.+.+.| +++|||++...
T Consensus 239 ~~vs~~~~~~~~~-lftL~~D-------~~LRiWsl~t~ 269 (1139)
T 4fhn_B 239 TIISMIFLSTYNV-LVMLSLD-------YKLKVLDLSTN 269 (1139)
T ss_dssp CBSCCEEETTTTE-EEEEBTT-------CEEEEEETTTT
T ss_pred eeEEeeccCCccE-EEEEeCC-------CEEEEEECCCC
Confidence 4556666665554 5555554 99999999843
No 365
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.47 E-value=2.5e+02 Score=28.74 Aligned_cols=115 Identities=8% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CCCCeEEEEecCCCCcEEEEEcCCCc-------
Q 010997 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNS------- 347 (496)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~sgs~dg~------- 347 (496)
+.|..|+++|..+..++.+...+.|...+-.......+..... ....|.+|+++|.+.+.++.+.....
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Q ss_pred EEEEeCCCCCCCCCCCCceEeccCCCC----------EEEEEEcCCCCCEEEEEeCC-CcEEE
Q 010997 348 VRMFDRRNLTSNGVGSPINKFEGHSAA----------VLCVQWSPDKSSVFGSSAED-GLLNI 399 (496)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~~h~~~----------i~~l~~sp~~~~llas~~~d-g~i~i 399 (496)
..||--.. +-..-+....... +..|+++|....++..+... +.|..
T Consensus 103 ~~l~~S~D------gG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~ 159 (737)
T 2cn3_A 103 GAILRSTD------RGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWR 159 (737)
T ss_dssp CEEEEESS------SSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEE
T ss_pred ccEEEeCC------CCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEE
No 366
>2lid_A Vitellogenin; lipid transport; HET: SEP; NMR {Synthetic}
Probab=35.07 E-value=12 Score=19.75 Aligned_cols=10 Identities=50% Similarity=0.521 Sum_probs=8.4
Q ss_pred cCCCCCCccc
Q 010997 9 RGRKPKPKED 18 (496)
Q Consensus 9 ~~~~~~~~~~ 18 (496)
-+||||++|.
T Consensus 25 fqrkpkltea 34 (35)
T 2lid_A 25 FQRKPKLTEA 34 (35)
Confidence 5899999885
No 367
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=27.36 E-value=4.1e+02 Score=25.27 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=20.3
Q ss_pred ceeEEEecCCCCc--EEEEEeCCCcEEEEeCC
Q 010997 142 EVNRIRELPQNTK--IVATHTDSPDVLIWDVE 171 (496)
Q Consensus 142 ~V~~l~~~p~~~~--~lat~~~dg~i~iwd~~ 171 (496)
.-..|+|.| ++. +|+ +...|.|++++..
T Consensus 15 ~P~~~a~~p-dG~~rl~V-~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSG-DGSQRLFI-LEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCS-SSSCCEEE-EETTTEEEEECTT
T ss_pred CceEEEECC-CCCeEEEE-EeCCceEEEEeCC
Confidence 357889999 654 554 4678999999754
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.98 E-value=93 Score=31.65 Aligned_cols=28 Identities=7% Similarity=0.347 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 325 ~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
.|.++.+ +..++++-+.|.++|+||+++
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t 250 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTS 250 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTT
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCC
Confidence 3555554 467999999999999999998
No 369
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=21.28 E-value=4.5e+02 Score=23.57 Aligned_cols=165 Identities=10% Similarity=-0.000 Sum_probs=84.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (496)
Q Consensus 152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~ 231 (496)
+..+++..+.+|.|+--.+........ .......+... + .+..+........|+..+..|.+..+........
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r-----~G~~~i~lke~-D-~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip 180 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRS-----GGIVAVNLRDN-D-ELVGAVLCSAGDDLLLVSANGQSIRFSATDEALR 180 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCS-----SCEESCBCCTT-C-CEEEEEEECTTCEEEEEETTSEEEEEECCTTTSC
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhcccc-----CceEEEEECCC-C-EEEEEEEecCCCEEEEEECCCeEEEEECcccccC
Confidence 466899999999999988766422110 00111122222 2 2334444444456777778888888877521110
Q ss_pred ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (496)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (496)
..... . .+.....+. ....|.++...+.+ ..++..+..|.++.-.+..-
T Consensus 181 ~~gr~-------------------a----------~Gv~~i~L~-~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 181 PMGRA-------------------T----------SGVQGMRFN-IDDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp CCCTT-------------------S----------BCEESSCCC-TTCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGS
T ss_pred cCCcC-------------------C----------CCeeeecCC-CCCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHc
Confidence 00000 0 000001111 23456665555444 47888889999998876532
Q ss_pred Cc-----cceee--eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997 312 TS-----PVIKV--EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (496)
Q Consensus 312 ~~-----~~~~~--~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~ 355 (496)
.. .-... +....+.+..+.... ....++..+.+|.+.-++...
T Consensus 230 ~~~~R~~~G~~~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 230 PVQGRGGKGVLTVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CBCCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred cccCcCCCcEEEEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 21 01111 112133455544433 345566667788877776654
No 370
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=21.10 E-value=6.6e+02 Score=25.47 Aligned_cols=107 Identities=8% Similarity=0.131 Sum_probs=54.1
Q ss_pred CCCcEEEEeCCCCCCCC-CCCCceE-ecc-CCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCcccCCCCCCCCC
Q 010997 344 ADNSVRMFDRRNLTSNG-VGSPINK-FEG-HSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNY 418 (496)
Q Consensus 344 ~dg~i~iwd~~~~~~~~-~~~~~~~-~~~-h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~~~~~~~~~~~~~~~ 418 (496)
..+.|...|+....... ....... +.. ....+..+.|..+ .++++...++. |.++|+....-.
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~---------- 385 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWT---------- 385 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEEC----------
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceE----------
Confidence 46789999987631100 0011222 222 2345778888876 47778777775 556665442100
Q ss_pred CCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997 419 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 468 (496)
Q Consensus 419 ~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~ 468 (496)
...+..+.+ .+.|..+...+++..++++.+.. ..-+.+..+++.
T Consensus 386 -~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~----~~P~~~~~~d~~ 429 (711)
T 4hvt_A 386 -KPVVLKLPY-QNAIFGMSSYEEEEEALITIENS----IVPPTIYLWVKT 429 (711)
T ss_dssp -CCEEECCCS-TTCEEEEECCTTCSCEEEEEECS----SSCCEEEEECTT
T ss_pred -EEeccCCCC-CeEEEEEeecCcCCEEEEEEecC----CCCCEEEEEeCC
Confidence 011011111 13455566667777777665532 233556666553
Done!