Query 010998
Match_columns 496
No_of_seqs 198 out of 870
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c6a_A Ubiquitin-protein ligas 21.5 20 0.00068 25.6 0.0 18 23-40 20-37 (46)
2 1gl4_A Nidogen-1, entactin; im 17.3 5.3E+02 0.018 25.1 9.3 118 238-358 84-235 (285)
3 1jb0_X Photosystem I subunit P 16.7 72 0.0025 21.2 1.9 22 160-184 7-28 (35)
4 3j1r_A Archaeal adhesion filam 10.7 1.7E+02 0.0058 18.2 2.2 15 108-122 4-18 (26)
5 1xrd_A LH-1, light-harvesting 10.3 1.1E+02 0.0037 22.4 1.4 24 467-490 8-31 (52)
6 2cr8_A MDM4 protein; ZF-ranbp 9.3 70 0.0024 23.3 0.1 16 24-39 19-34 (53)
7 3u2g_A S-layer protein MA0829; 9.2 6.8E+02 0.023 24.4 7.2 52 308-368 123-175 (286)
8 3kcp_B Cellulosome anchoring p 8.3 2E+02 0.0068 26.2 2.7 22 450-471 38-61 (187)
9 1lgh_A LH II, B800/850, light 7.7 1.6E+02 0.0054 21.8 1.4 24 467-490 13-36 (56)
10 1q16_C Cytochrome B-NR, respir 7.4 1.5E+02 0.0052 27.3 1.6 24 250-273 48-71 (225)
No 1
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.50 E-value=20 Score=25.60 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.4
Q ss_pred cccCcchhhhccccccce
Q 010998 23 STFNPQLHTLFNRCITLS 40 (496)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (496)
.+|||-++..|+||-.|+
T Consensus 20 ~~~N~Pl~r~C~rCw~LR 37 (46)
T 2c6a_A 20 NEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp CCEECSSCSSCTTTCCCC
T ss_pred cccCCCccchhhHHHhhc
Confidence 389999999999998554
No 2
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=17.35 E-value=5.3e+02 Score=25.08 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=65.3
Q ss_pred ecceEEEEcCcccchhhHHHHHHHHHHHHhhhcc--------------cccceEEEEEEeCC-ceeeecccc---C----
Q 010998 238 KGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS--------------ATGSFRGSVTVPQG-LNFVVGDVL---G---- 295 (496)
Q Consensus 238 ~~~~l~A~Kg~~~r~G~~l~HlslvlILiG~llg--------------~~~Gf~g~v~l~eG-e~~~~~~~~---~---- 295 (496)
++....|-...-..+|+-+.=+.-++-.+|.+.. +.|-.+.++.-..| |.+.+...+ .
T Consensus 84 dgr~ytais~Ip~~~G~~l~~L~~ig~~igWlfA~e~~~~~NGfslTgG~F~r~s~v~F~~g~e~l~i~q~~~GlD~~g~ 163 (285)
T 1gl4_A 84 HGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGH 163 (285)
T ss_dssp TCEEEEEEESCCHHHHGGGTTCTHHHHHHHHHTCEECTTCCCHHHHHTTEEEEEEEEEETTSSSCEEEEEEEECBCTTSC
T ss_pred CCeEEEEeccCChhhchhhhhhhhhccceeeeeecccCccccceEeeCceEEEEEEEEEcCCCeEEEEEEEEEccCcCCc
Confidence 3444556666666777776666666666665542 23334444555556 555443221 1
Q ss_pred -------CCCCcCCCCCCcceEEEEccEEEEEe-cCCCeeeEEEEEEEEecC---C-ceeEEEEEEeCcceEECC
Q 010998 296 -------PNGFLSTPTDAFSTEVHVNKFYMDYY-DSGEVKQFHSDLSLFDIG---G-KEVMRKTISVNDPLRYGG 358 (496)
Q Consensus 296 -------~g~~~~~~~~~~pf~i~l~~F~i~yy-~~G~p~~f~Sdlti~~~~---G-~~v~~~~I~VN~PL~y~G 358 (496)
+|. .-.++. ..+|++.+|+-+|. ..|....+.+.--.++.. | .........+||-..|++
T Consensus 164 L~~~~~i~G~-vP~i~~--~~~v~i~dy~E~Y~~~~g~l~s~str~~~~~~~~~~g~~~~~~~~y~~~qtI~y~~ 235 (285)
T 1gl4_A 164 LTISTELEGR-VPQIPY--GASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITFQE 235 (285)
T ss_dssp EECEEEEEEE-ECCCCT--TCEEECCCEEEEEEEETTEEEEEEEEEEEEECCSSTTCCCCEEEEEEEEEEEECCC
T ss_pred EEEEEEEeee-cCCCCC--CCeeecCCcceEEEEcCCEEEEEeeeeEEeccccccCcccceeEeEEEeeEEEecc
Confidence 122 112333 44999999999884 346667666664444432 2 123456677777776554
No 3
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=16.67 E-value=72 Score=21.16 Aligned_cols=22 Identities=5% Similarity=0.200 Sum_probs=15.9
Q ss_pred CCcccccHHHHHHHHHHHHHhhhhh
Q 010998 160 FDHMFSSPIFLGLLVMMGLSLMACT 184 (496)
Q Consensus 160 l~~vYsSwWF~~Ll~LL~inL~~Ct 184 (496)
...+|.+-|.+ +||++|.++.-
T Consensus 7 p~y~frt~Wal---llLaINflVAa 28 (35)
T 1jb0_X 7 PTYAFRTFWAV---LLLAINFLVAA 28 (35)
T ss_dssp CCCCHHHHHHH---HHHHHHHHHHH
T ss_pred CCccHHHHHHH---HHHHHHHHHHH
Confidence 35688888887 66778877653
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=10.69 E-value=1.7e+02 Score=18.20 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHhh
Q 010998 108 PLAIGEMAAIAALMA 122 (496)
Q Consensus 108 klaI~LL~lLav~si 122 (496)
-.|.+||+++|++++
T Consensus 4 iVA~~lLIviav~aa 18 (26)
T 3j1r_A 4 VIATLLLILIAVAAA 18 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367778888887754
No 5
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=10.27 E-value=1.1e+02 Score=22.37 Aligned_cols=24 Identities=25% Similarity=0.276 Sum_probs=21.2
Q ss_pred ecCCchHHHHHHHHHHHHHhhhhc
Q 010998 467 TDPGVPIVYAGFGALMLTTCISFL 490 (496)
Q Consensus 467 ~DPGvpiV~~Gf~Ll~lGL~lsf~ 490 (496)
-||-..+|-.+.+++++++.++|+
T Consensus 8 fDPrr~Lva~~~fl~vlAl~IHfi 31 (52)
T 1xrd_A 8 FDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchhHHHHHHHHHHHHHHHHHHHH
Confidence 388889999999999999999874
No 6
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=9.33 E-value=70 Score=23.33 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.4
Q ss_pred ccCcchhhhccccccc
Q 010998 24 TFNPQLHTLFNRCITL 39 (496)
Q Consensus 24 ~~~~~~~~~~~~~~~~ 39 (496)
+|||-++.-|.||-.|
T Consensus 19 k~N~Pl~ryC~rCwaL 34 (53)
T 2cr8_A 19 KFNSPSKRYCFRCWAL 34 (53)
T ss_dssp CEECSSCCBCTTTCCB
T ss_pred ccCCCccchhHHHHHh
Confidence 8999999999999944
No 7
>3u2g_A S-layer protein MA0829; DUF1608 domain, cell envelop, surface layer, unknow function, structural protein; HET: CIT; 2.30A {Methanosarcina acetivorans} PDB: 3u2h_A
Probab=9.25 E-value=6.8e+02 Score=24.39 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=35.0
Q ss_pred ceEEEEccEEEEEecCCCeeeEEEEEEEEecCCceeEEEEEEeCcceEECCeEEEE-ccCCC
Q 010998 308 STEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQ-TDWSF 368 (496)
Q Consensus 308 pf~i~l~~F~i~yy~~G~p~~f~Sdlti~~~~G~~v~~~~I~VN~PL~y~G~~~YQ-ss~g~ 368 (496)
.|+++++...+ +|. ...|++.. ||+++..+.|+++.--.-+-..+|- .+.|-
T Consensus 123 GY~L~i~~Id~----dG~----kV~leL~K-DG~~Vds~vv~~~~~~~~~~t~~y~~~di~~ 175 (286)
T 3u2g_A 123 GYAIEAKQVDV----DGE----KVWLEFTK-DGEFVDDEIISVSTADDEANTWDVELDDIED 175 (286)
T ss_dssp TEEEEEEEECT----TSS----EEEEEEEE-TTEEEEEEEEECSSSCGGGGEEEEEESCBTT
T ss_pred CeEEEEEEEeC----CCC----EEEEEEEe-CCcEeeEEEEccCCCCcccceEEEEccccCC
Confidence 35788776554 555 56777876 8999999999998542212355666 66654
No 8
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=8.27 E-value=2e+02 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.7
Q ss_pred eEEEEeeeeeeEEEEE--eecCCc
Q 010998 450 TKIVIVDAIGSTGLDL--KTDPGV 471 (496)
Q Consensus 450 ~~i~f~~~~~~tGLqV--k~DPGv 471 (496)
.+|+..+++.++|.|| |.||-+
T Consensus 38 ATIkinnI~nfAGYQvNIKYDP~V 61 (187)
T 3kcp_B 38 GTVRINNIKNFAGFQVNIVYDPKV 61 (187)
T ss_dssp EEEEEESCTTEEEEEEEEECCTTT
T ss_pred EEEEEcccccccceEEeeeEChhH
Confidence 5889999999999885 789875
No 9
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=7.71 E-value=1.6e+02 Score=21.84 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=20.7
Q ss_pred ecCCchHHHHHHHHHHHHHhhhhc
Q 010998 467 TDPGVPIVYAGFGALMLTTCISFL 490 (496)
Q Consensus 467 ~DPGvpiV~~Gf~Ll~lGL~lsf~ 490 (496)
-||.+.++....+++++.++++|.
T Consensus 13 vdP~~~L~~l~~~v~vlAllIH~~ 36 (56)
T 1lgh_A 13 INPSTWLPVIWIVATVVAIAVHAA 36 (56)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCceeHHHHHHHHHHHHHHHHHH
Confidence 388889999999999999999863
No 10
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=7.41 E-value=1.5e+02 Score=27.34 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.9
Q ss_pred cchhhHHHHHHHHHHHHhhhcccc
Q 010998 250 GRFAPIGVHLAMLLIMAGGTLSAT 273 (496)
Q Consensus 250 ~r~G~~l~HlslvlILiG~llg~~ 273 (496)
.++++.++|.+++++++|.+.+.+
T Consensus 48 l~~~~~l~H~~il~l~~g~~~~~l 71 (225)
T 1q16_C 48 MNLASNLFHIGILGIFVGHFFGML 71 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445999999999999999886553
Done!