Query 010998
Match_columns 496
No_of_seqs 198 out of 870
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 18:41:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010998.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010998hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iaka2 d.19.1.1 (A:1-81) Clas 24.5 38 0.0028 25.2 4.1 27 358-385 10-37 (82)
2 d1y5ic1 f.21.3.1 (C:1-225) Res 21.0 18 0.0013 31.6 2.0 26 248-273 46-71 (225)
3 d1uvqa2 d.19.1.1 (A:2-84) Clas 19.5 47 0.0035 24.7 3.8 27 358-385 11-38 (83)
4 d2c6aa1 g.41.11.1 (A:290-335) 14.1 18 0.0013 24.1 0.0 18 23-40 20-37 (46)
5 d2cr8a1 g.41.11.1 (A:8-48) MDM 11.7 24 0.0018 22.8 0.1 18 23-40 11-28 (41)
6 d2o3ga1 d.145.1.4 (A:180-255) 8.6 2E+02 0.015 19.9 4.6 32 438-469 43-76 (76)
7 d2iqia1 c.51.6.2 (A:32-209) Hy 7.8 3.7E+02 0.027 21.2 6.6 47 309-355 94-142 (178)
8 d1zhva2 d.58.18.8 (A:62-127) H 7.0 1.4E+02 0.0099 20.9 2.7 20 216-235 46-65 (66)
9 d1wgoa_ b.1.3.1 (A:) VPS10 dom 6.7 1.9E+02 0.013 22.6 3.7 30 325-354 92-121 (123)
10 d1xrda1 f.3.1.1 (A:1-52) Light 6.5 95 0.0069 20.9 1.4 24 467-490 8-31 (52)
No 1
>d1iaka2 d.19.1.1 (A:1-81) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
Probab=24.50 E-value=38 Score=25.23 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=20.9
Q ss_pred CeEEEEccCCCce-eEEEeCCCcceEeec
Q 010998 358 GITIYQTDWSFSA-LQVLKNDEGPFNLAM 385 (496)
Q Consensus 358 G~~~YQss~g~~~-v~v~~~~~~~~~l~~ 385 (496)
|..||| +||.+. .....|++..|..++
T Consensus 10 g~~~yq-s~~psGe~~~efDGdE~fyvDl 37 (82)
T d1iaka2 10 GITVYQ-SPGDIGQYTFEFDGDELFYVDL 37 (82)
T ss_dssp EEEEEE-ETTTEEEEEEEETTEEEEEEET
T ss_pred ceeEEE-ecCCCccEeeeeCCcEEEEEEc
Confidence 789999 677765 677888877777776
No 2
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=21.02 E-value=18 Score=31.62 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.5
Q ss_pred cccchhhHHHHHHHHHHHHhhhcccc
Q 010998 248 LVGRFAPIGVHLAMLLIMAGGTLSAT 273 (496)
Q Consensus 248 ~~~r~G~~l~HlslvlILiG~llg~~ 273 (496)
++.++|..++|.+++++++|.+++-+
T Consensus 46 k~l~~~~~lfH~gi~~~f~gh~~g~l 71 (225)
T d1y5ic1 46 KGMNLASNLFHIGILGIFVGHFFGML 71 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999888754
No 3
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Probab=19.53 E-value=47 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=20.7
Q ss_pred CeEEEEccCCCce-eEEEeCCCcceEeec
Q 010998 358 GITIYQTDWSFSA-LQVLKNDEGPFNLAM 385 (496)
Q Consensus 358 G~~~YQss~g~~~-v~v~~~~~~~~~l~~ 385 (496)
|.+||| +||.+. .....|++..|..++
T Consensus 11 g~~~yq-s~~psGey~~~fDGdE~fyvDl 38 (83)
T d1uvqa2 11 GVNLYQ-FYGPSGQYTHEFDGDEQFYVDL 38 (83)
T ss_dssp EEEEEE-TTTTEEEEEEEETTEEEEEEET
T ss_pred cceEEE-ecCCCccEeeccCCcEEEEEEc
Confidence 789999 667765 577778877777766
No 4
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.10 E-value=18 Score=24.06 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.4
Q ss_pred cccCcchhhhccccccce
Q 010998 23 STFNPQLHTLFNRCITLS 40 (496)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (496)
..|||-++..|+||-.|+
T Consensus 20 ~~~N~Pl~ryC~rCWaLR 37 (46)
T d2c6aa1 20 NEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp CCEECSSCSSCTTTCCCC
T ss_pred cccCCcchhHhHHHHHHh
Confidence 489999999999998554
No 5
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.66 E-value=24 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.2
Q ss_pred cccCcchhhhccccccce
Q 010998 23 STFNPQLHTLFNRCITLS 40 (496)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (496)
..|||-++..|.||-.|+
T Consensus 11 ~~~N~Pl~ryC~rCWalR 28 (41)
T d2cr8a1 11 KKFNSPSKRYCFRCWALR 28 (41)
T ss_dssp CCEECSSCCBCTTTCCBC
T ss_pred cccCCcchhHHHHHHHHH
Confidence 478999999999998554
No 6
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=8.65 E-value=2e+02 Score=19.94 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=23.1
Q ss_pred cCCCCCceeeCCeEEEEeeee--eeEEEEEeecC
Q 010998 438 RPNSKLPIDIDGTKIVIVDAI--GSTGLDLKTDP 469 (496)
Q Consensus 438 ~l~~g~~i~l~g~~i~f~~~~--~~tGLqVk~DP 469 (496)
.+..|+.+.++|++++..+.. +-.-+.|.+-|
T Consensus 43 iP~~Ge~v~~~~~~f~V~~~~~~rI~~V~v~~lP 76 (76)
T d2o3ga1 43 IPDVGDFADFHGWRFEVVEKEGQRIERVKITKLP 76 (76)
T ss_dssp CCCTTCEEEETTEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCCCEEEECCEEEEEEEeeCCeEEEEEEEECc
Confidence 456689999999988887654 44566776655
No 7
>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=7.84 E-value=3.7e+02 Score=21.25 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=30.4
Q ss_pred eEEEEccEEEEEecCCCe-eeEEEEEEEEec-CCceeEEEEEEeCcceE
Q 010998 309 TEVHVNKFYMDYYDSGEV-KQFHSDLSLFDI-GGKEVMRKTISVNDPLR 355 (496)
Q Consensus 309 f~i~l~~F~i~yy~~G~p-~~f~Sdlti~~~-~G~~v~~~~I~VN~PL~ 355 (496)
..+++.+|+.++..++.. -...-+.++.+. +|+.+..+.+.+..|+.
T Consensus 94 L~~~i~~F~~~~~~~~~~~a~~~~~~~l~~~~~~~v~~~~~f~~~~p~~ 142 (178)
T d2iqia1 94 LAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSS 142 (178)
T ss_dssp EEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECS
T ss_pred EEEEEEEEEEEecCCCceEEEEEEEEEEecCCCCcEEEEEEEEEEEeCC
Confidence 489999999998655443 233444555654 34455677777777764
No 8
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.00 E-value=1.4e+02 Score=20.89 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=17.6
Q ss_pred cchhhHHHHHHHHhhCCeEE
Q 010998 216 LPRASIQDLGVILMGAGYEV 235 (496)
Q Consensus 216 ~~~~~~~~v~~~L~~~gyrv 235 (496)
.|++..+++.+.|++.||+|
T Consensus 46 Vp~~~~~~A~~~L~~~g~~v 65 (66)
T d1zhva2 46 VRSNDLEKTADLLANAGHSL 65 (66)
T ss_dssp EEGGGHHHHHHHHHHTTCEE
T ss_pred EEHHHHHHHHHHHHHccCEe
Confidence 36778899999999999987
No 9
>d1wgoa_ b.1.3.1 (A:) VPS10 domain-containing receptor SorCS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.71 E-value=1.9e+02 Score=22.58 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=24.5
Q ss_pred CeeeEEEEEEEEecCCceeEEEEEEeCcce
Q 010998 325 EVKQFHSDLSLFDIGGKEVMRKTISVNDPL 354 (496)
Q Consensus 325 ~p~~f~Sdlti~~~~G~~v~~~~I~VN~PL 354 (496)
.+-.|.-.|++.+..|.......|.||.|-
T Consensus 92 ~~G~Y~V~ltv~n~~gsdtat~~I~V~~P~ 121 (123)
T d1wgoa_ 92 SPGIYRVSVRAENTAGHDEAVLFVQVSGPS 121 (123)
T ss_dssp SCSCEEEEEEEECSSCEEEEEEEECBCCSS
T ss_pred eCCeEEEEEEEEcCCCceEEEEEEEECCCC
Confidence 466788999998877877778889999984
No 10
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=6.49 E-value=95 Score=20.89 Aligned_cols=24 Identities=25% Similarity=0.276 Sum_probs=20.9
Q ss_pred ecCCchHHHHHHHHHHHHHhhhhc
Q 010998 467 TDPGVPIVYAGFGALMLTTCISFL 490 (496)
Q Consensus 467 ~DPGvpiV~~Gf~Ll~lGL~lsf~ 490 (496)
-||-.-+|-.+.+++++.+.++|+
T Consensus 8 fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 8 FDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888999999999999999874
Done!