Query 011000
Match_columns 496
No_of_seqs 233 out of 1409
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2596 Aminopeptidase I zinc 100.0 4E-118 8E-123 895.6 35.5 436 55-495 12-479 (479)
2 COG1362 LAP4 Aspartyl aminopep 100.0 4E-110 8E-115 852.7 36.2 402 59-484 7-435 (437)
3 PTZ00371 aspartyl aminopeptida 100.0 6E-109 1E-113 879.4 45.3 433 57-495 5-465 (465)
4 PF02127 Peptidase_M18: Aminop 100.0 2E-108 4E-113 865.8 26.5 405 67-482 1-432 (432)
5 PRK02813 putative aminopeptida 100.0 4E-105 9E-110 842.5 45.4 398 57-484 4-427 (428)
6 PRK02256 putative aminopeptida 100.0 2E-104 4E-109 840.9 41.5 424 34-484 3-461 (462)
7 PRK09864 putative peptidase; P 100.0 9.2E-58 2E-62 471.3 27.3 303 101-487 30-343 (356)
8 COG1363 FrvX Cellulase M and r 100.0 3.6E-56 7.7E-61 456.3 28.6 316 89-488 19-349 (355)
9 TIGR03107 glu_aminopep glutamy 100.0 1.3E-54 2.8E-59 448.2 26.5 303 101-487 28-343 (350)
10 PRK09961 exoaminopeptidase; Pr 100.0 3.1E-52 6.7E-57 430.7 30.7 292 105-487 35-335 (344)
11 PF05343 Peptidase_M42: M42 gl 100.0 6.4E-52 1.4E-56 419.1 17.4 281 115-477 2-292 (292)
12 TIGR03106 trio_M42_hydro hydro 100.0 9.1E-49 2E-53 404.3 32.4 308 73-484 21-341 (343)
13 TIGR01882 peptidase-T peptidas 98.8 2.1E-06 4.6E-11 91.2 24.2 53 433-486 355-407 (410)
14 PF01546 Peptidase_M20: Peptid 98.4 4.6E-06 1E-10 77.8 14.2 159 271-484 26-189 (189)
15 PRK10199 alkaline phosphatase 98.0 6E-05 1.3E-09 78.4 11.5 46 277-327 140-185 (346)
16 TIGR01883 PepT-like peptidase 97.4 0.00033 7.2E-09 72.7 7.3 74 404-483 288-361 (361)
17 PRK13381 peptidase T; Provisio 96.9 0.0022 4.7E-08 68.0 7.7 78 403-486 326-403 (404)
18 PRK05469 peptidase T; Provisio 96.9 0.0022 4.9E-08 67.9 7.7 79 403-487 328-406 (408)
19 PRK08554 peptidase; Reviewed 96.7 0.0036 7.9E-08 67.4 7.6 77 403-485 360-436 (438)
20 PF04389 Peptidase_M28: Peptid 96.5 0.0009 1.9E-08 62.5 1.1 154 274-473 20-177 (179)
21 PRK12891 allantoate amidohydro 96.2 0.011 2.3E-07 63.0 7.4 78 403-487 331-410 (414)
22 PRK07338 hypothetical protein; 96.2 0.0092 2E-07 63.0 6.6 78 404-487 321-399 (402)
23 PRK07473 carboxypeptidase; Pro 96.2 0.0076 1.7E-07 63.4 5.7 75 405-485 300-375 (376)
24 PRK08652 acetylornithine deace 95.9 0.012 2.6E-07 60.5 5.9 77 404-486 268-345 (347)
25 PRK06837 acetylornithine deace 95.9 0.018 3.9E-07 61.6 7.1 80 404-488 344-424 (427)
26 TIGR01246 dapE_proteo succinyl 95.9 0.019 4.1E-07 59.8 7.1 76 404-485 294-370 (370)
27 TIGR01902 dapE-lys-deAc N-acet 95.8 0.018 3.9E-07 59.3 6.6 80 403-487 255-335 (336)
28 TIGR01880 Ac-peptdase-euk N-ac 95.6 0.035 7.5E-07 58.6 7.6 78 404-487 319-399 (400)
29 PRK13983 diaminopimelate amino 95.4 0.045 9.8E-07 57.4 7.6 75 403-483 323-398 (400)
30 PRK12890 allantoate amidohydro 95.3 0.048 1E-06 57.9 7.6 79 402-487 332-412 (414)
31 PRK09290 allantoate amidohydro 95.3 0.045 9.8E-07 58.2 7.4 77 403-486 332-410 (413)
32 PRK04443 acetyl-lysine deacety 95.1 0.049 1.1E-06 56.5 7.0 77 404-485 271-348 (348)
33 PRK08651 succinyl-diaminopimel 94.8 0.064 1.4E-06 56.3 6.9 77 404-486 313-391 (394)
34 PRK13009 succinyl-diaminopimel 94.8 0.076 1.6E-06 55.3 7.4 75 405-485 298-373 (375)
35 PRK06915 acetylornithine deace 94.8 0.066 1.4E-06 57.0 7.0 81 403-488 338-420 (422)
36 COG2195 PepD Di- and tripeptid 94.7 0.13 2.8E-06 55.1 9.0 92 389-486 317-412 (414)
37 PRK00466 acetyl-lysine deacety 94.5 0.1 2.2E-06 54.1 7.3 77 404-486 266-343 (346)
38 TIGR01893 aa-his-dipept aminoa 94.3 0.11 2.4E-06 56.5 7.4 79 402-485 396-476 (477)
39 PRK13004 peptidase; Reviewed 94.2 0.054 1.2E-06 57.2 4.7 78 404-486 317-396 (399)
40 PRK08596 acetylornithine deace 94.2 0.12 2.7E-06 55.1 7.3 80 404-489 338-419 (421)
41 PRK08737 acetylornithine deace 93.9 0.12 2.7E-06 54.2 6.5 72 405-483 290-362 (364)
42 PRK15026 aminoacyl-histidine d 93.8 0.13 2.8E-06 56.3 6.9 81 401-486 401-483 (485)
43 PRK08588 succinyl-diaminopimel 93.8 0.15 3.1E-06 53.4 6.9 77 404-485 296-375 (377)
44 PRK09133 hypothetical protein; 93.6 0.13 2.9E-06 55.6 6.5 78 404-487 386-470 (472)
45 PRK12893 allantoate amidohydro 93.3 0.19 4.1E-06 53.3 6.8 77 403-485 331-408 (412)
46 PRK07318 dipeptidase PepV; Rev 93.2 0.1 2.2E-06 56.5 4.7 75 404-485 388-464 (466)
47 TIGR03176 AllC allantoate amid 93.2 0.13 2.9E-06 54.7 5.6 78 403-487 325-404 (406)
48 TIGR03176 AllC allantoate amid 93.0 0.24 5.2E-06 52.8 7.1 50 74-141 32-81 (406)
49 PRK12892 allantoate amidohydro 92.6 0.24 5.2E-06 52.5 6.5 76 403-485 332-409 (412)
50 TIGR03320 ygeY M20/DapE family 92.3 0.18 3.8E-06 53.3 5.0 78 404-486 315-394 (395)
51 PRK13013 succinyl-diaminopimel 92.2 0.37 8.1E-06 51.2 7.3 78 406-489 344-425 (427)
52 PRK06446 hypothetical protein; 92.0 0.28 6E-06 52.6 6.1 79 404-486 351-434 (436)
53 TIGR01879 hydantase amidase, h 92.0 0.36 7.7E-06 51.2 6.8 76 403-484 324-400 (401)
54 TIGR01910 DapE-ArgE acetylorni 91.8 0.29 6.3E-06 51.1 5.9 68 403-476 305-374 (375)
55 PRK07906 hypothetical protein; 91.8 0.46 9.9E-06 50.6 7.4 77 403-485 340-426 (426)
56 PRK13799 unknown domain/N-carb 91.6 0.37 8E-06 54.1 6.7 79 403-487 510-590 (591)
57 PRK07079 hypothetical protein; 91.4 0.49 1.1E-05 51.3 7.2 81 404-488 374-457 (469)
58 TIGR03526 selenium_YgeY putati 91.3 0.36 7.8E-06 51.0 5.9 77 404-485 315-393 (395)
59 PRK07522 acetylornithine deace 90.3 0.53 1.1E-05 49.2 6.0 52 433-485 331-383 (385)
60 PRK09104 hypothetical protein; 90.3 0.64 1.4E-05 50.3 6.8 78 404-486 381-462 (464)
61 PRK06133 glutamate carboxypept 89.2 0.6 1.3E-05 49.7 5.5 76 406-485 329-406 (410)
62 COG0624 ArgE Acetylornithine d 88.9 1.1 2.4E-05 47.4 7.3 78 404-487 329-408 (409)
63 PRK05111 acetylornithine deace 88.9 0.88 1.9E-05 47.5 6.4 51 434-485 329-380 (383)
64 PRK13007 succinyl-diaminopimel 87.8 0.87 1.9E-05 46.9 5.5 49 433-482 302-351 (352)
65 PRK13590 putative bifunctional 87.7 1 2.2E-05 50.6 6.3 79 403-487 508-588 (591)
66 PRK13381 peptidase T; Provisio 87.2 1.9 4E-05 45.7 7.6 43 279-325 137-179 (404)
67 PRK13799 unknown domain/N-carb 86.9 0.91 2E-05 51.0 5.3 80 59-141 163-263 (591)
68 PRK15026 aminoacyl-histidine d 86.9 1.1 2.4E-05 49.1 5.9 41 280-327 115-155 (485)
69 PRK08201 hypothetical protein; 86.6 1.9 4.2E-05 46.4 7.5 76 404-486 373-454 (456)
70 PRK12891 allantoate amidohydro 86.4 1.2 2.7E-05 47.3 5.8 50 74-141 39-88 (414)
71 PRK13590 putative bifunctional 86.2 1.1 2.3E-05 50.4 5.4 33 106-141 231-263 (591)
72 TIGR01886 dipeptidase dipeptid 85.9 1.2 2.6E-05 48.4 5.5 75 404-485 388-464 (466)
73 TIGR01892 AcOrn-deacetyl acety 84.8 0.96 2.1E-05 46.7 3.9 48 433-481 315-363 (364)
74 TIGR01893 aa-his-dipept aminoa 84.3 3.8 8.1E-05 44.6 8.4 57 71-143 18-76 (477)
75 PRK06156 hypothetical protein; 83.6 2.5 5.4E-05 46.6 6.7 73 405-487 439-516 (520)
76 TIGR01879 hydantase amidase, h 83.4 2.1 4.5E-05 45.4 5.8 51 74-142 30-80 (401)
77 PRK12890 allantoate amidohydro 83.3 3.4 7.4E-05 43.9 7.4 54 71-142 34-87 (414)
78 COG4187 RocB Arginine degradat 83.0 5.8 0.00013 42.8 8.7 56 271-330 130-186 (553)
79 PRK07338 hypothetical protein; 82.9 6.7 0.00015 41.3 9.5 77 58-142 17-105 (402)
80 PRK07205 hypothetical protein; 82.9 2.6 5.6E-05 45.3 6.4 74 403-486 364-442 (444)
81 PRK07907 hypothetical protein; 82.6 3.8 8.3E-05 44.1 7.5 78 404-486 365-447 (449)
82 PRK12892 allantoate amidohydro 82.2 4.7 0.0001 42.6 8.0 49 74-141 38-86 (412)
83 TIGR01883 PepT-like peptidase 82.0 2.8 6.1E-05 43.3 6.1 50 272-325 87-141 (361)
84 TIGR01910 DapE-ArgE acetylorni 81.9 1.7 3.8E-05 45.3 4.5 50 273-325 97-147 (375)
85 PRK05469 peptidase T; Provisio 81.9 5.1 0.00011 42.4 8.1 42 279-324 139-180 (408)
86 PRK08651 succinyl-diaminopimel 81.7 1.5 3.3E-05 46.0 4.0 46 274-325 107-153 (394)
87 PRK08262 hypothetical protein; 81.2 2.1 4.5E-05 46.6 4.9 78 404-486 400-484 (486)
88 PRK08596 acetylornithine deace 80.7 2 4.4E-05 45.7 4.6 50 273-325 110-160 (421)
89 KOG2195 Transferrin receptor a 80.5 4.9 0.00011 46.0 7.7 150 264-465 354-514 (702)
90 PLN02280 IAA-amino acid hydrol 80.2 11 0.00025 41.2 10.2 78 403-485 387-473 (478)
91 PRK07473 carboxypeptidase; Pro 79.8 2.1 4.5E-05 45.1 4.2 45 277-324 109-153 (376)
92 COG2234 Iap Predicted aminopep 79.7 2.8 6E-05 44.7 5.2 75 274-373 222-296 (435)
93 PRK12893 allantoate amidohydro 79.0 8.7 0.00019 40.6 8.7 51 74-142 39-89 (412)
94 PRK07205 hypothetical protein; 78.8 2.5 5.4E-05 45.4 4.5 49 273-324 108-157 (444)
95 PRK08588 succinyl-diaminopimel 78.6 2.5 5.4E-05 44.1 4.4 50 273-325 92-142 (377)
96 PRK06915 acetylornithine deace 78.5 2.8 6.1E-05 44.5 4.8 49 273-324 126-175 (422)
97 TIGR01892 AcOrn-deacetyl acety 78.0 2.9 6.2E-05 43.2 4.6 48 273-325 90-138 (364)
98 PRK08262 hypothetical protein; 77.5 2.9 6.2E-05 45.5 4.6 49 274-325 147-196 (486)
99 PRK06837 acetylornithine deace 77.1 5.7 0.00012 42.4 6.7 77 62-141 27-109 (427)
100 TIGR01880 Ac-peptdase-euk N-ac 76.3 3.1 6.7E-05 43.9 4.3 49 274-325 105-155 (400)
101 PRK13983 diaminopimelate amino 75.7 7 0.00015 40.9 6.8 62 74-143 29-90 (400)
102 PRK06133 glutamate carboxypept 75.2 3.8 8.3E-05 43.5 4.7 43 279-324 135-177 (410)
103 PRK09133 hypothetical protein; 74.3 3.8 8.3E-05 44.4 4.5 49 273-324 133-183 (472)
104 PRK08652 acetylornithine deace 74.3 3.6 7.9E-05 42.1 4.1 42 278-324 85-126 (347)
105 PRK13009 succinyl-diaminopimel 74.2 8.7 0.00019 39.9 7.0 67 58-142 5-71 (375)
106 PRK07522 acetylornithine deace 73.8 4 8.8E-05 42.5 4.4 44 277-325 101-144 (385)
107 PRK07906 hypothetical protein; 73.1 13 0.00028 39.6 8.1 55 75-143 25-79 (426)
108 TIGR01902 dapE-lys-deAc N-acet 73.0 4.3 9.4E-05 41.7 4.3 43 277-326 79-121 (336)
109 PRK05111 acetylornithine deace 72.8 4.7 0.0001 42.1 4.6 43 278-325 109-151 (383)
110 PRK00466 acetyl-lysine deacety 71.9 4.4 9.5E-05 41.9 4.1 42 277-325 89-130 (346)
111 PRK04443 acetyl-lysine deacety 71.8 12 0.00026 38.7 7.3 63 59-142 10-72 (348)
112 PRK09104 hypothetical protein; 71.6 4.4 9.6E-05 43.8 4.2 48 274-324 121-169 (464)
113 PRK09290 allantoate amidohydro 70.3 13 0.00028 39.5 7.3 51 74-142 36-86 (413)
114 TIGR01891 amidohydrolases amid 70.0 14 0.00031 38.3 7.4 49 404-457 288-338 (363)
115 PRK07318 dipeptidase PepV; Rev 69.9 5.1 0.00011 43.4 4.2 44 278-324 116-159 (466)
116 TIGR01246 dapE_proteo succinyl 68.2 6.8 0.00015 40.7 4.6 64 60-141 4-67 (370)
117 PRK06446 hypothetical protein; 67.9 5.6 0.00012 42.7 3.9 45 275-323 98-142 (436)
118 PRK13004 peptidase; Reviewed 67.4 16 0.00035 38.5 7.3 51 72-142 32-82 (399)
119 PRK13013 succinyl-diaminopimel 67.1 6.5 0.00014 41.7 4.3 48 273-323 115-163 (427)
120 PRK13007 succinyl-diaminopimel 63.4 10 0.00022 39.0 4.7 41 274-321 88-129 (352)
121 PLN02280 IAA-amino acid hydrol 62.3 19 0.00041 39.5 6.8 67 58-143 96-166 (478)
122 TIGR01886 dipeptidase dipeptid 62.1 9.2 0.0002 41.5 4.3 46 277-325 114-159 (466)
123 TIGR01887 dipeptidaselike dipe 58.9 13 0.00028 40.2 4.7 69 404-482 374-447 (447)
124 TIGR01887 dipeptidaselike dipe 57.8 11 0.00025 40.7 4.1 46 277-325 103-148 (447)
125 TIGR03526 selenium_YgeY putati 57.4 35 0.00076 35.9 7.6 52 71-142 29-80 (395)
126 COG0624 ArgE Acetylornithine d 57.1 26 0.00056 37.0 6.6 70 59-141 17-87 (409)
127 PRK07907 hypothetical protein; 56.7 16 0.00034 39.3 4.9 43 276-324 120-162 (449)
128 PRK08554 peptidase; Reviewed 56.5 15 0.00033 39.6 4.8 41 277-322 100-140 (438)
129 PRK06156 hypothetical protein; 56.2 14 0.0003 40.8 4.5 44 279-325 153-196 (520)
130 TIGR01900 dapE-gram_pos succin 55.0 20 0.00043 37.7 5.2 49 272-321 94-143 (373)
131 PRK07079 hypothetical protein; 54.8 14 0.0003 40.1 4.1 48 275-324 122-169 (469)
132 PRK08201 hypothetical protein; 53.5 17 0.00036 39.2 4.4 44 277-323 117-160 (456)
133 TIGR03320 ygeY M20/DapE family 53.3 40 0.00086 35.5 7.2 51 72-142 30-80 (395)
134 cd05565 PTS_IIB_lactose PTS_II 51.0 49 0.0011 28.4 6.1 51 402-460 11-61 (99)
135 COG3655 Predicted transcriptio 49.0 14 0.00031 30.1 2.3 25 233-257 44-68 (73)
136 PLN02693 IAA-amino acid hydrol 47.9 70 0.0015 34.6 8.1 79 402-485 334-420 (437)
137 PF05382 Amidase_5: Bacterioph 46.5 23 0.00051 32.6 3.6 37 77-113 52-88 (145)
138 TIGR01900 dapE-gram_pos succin 44.5 42 0.0009 35.2 5.7 33 433-466 339-372 (373)
139 PRK08737 acetylornithine deace 42.3 28 0.00061 36.4 4.0 38 274-321 95-133 (364)
140 PF03698 UPF0180: Uncharacteri 39.6 38 0.00082 28.1 3.5 41 79-119 11-51 (80)
141 PRK13365 protocatechuate 4,5-d 35.9 3E+02 0.0064 28.0 10.1 120 356-486 46-178 (279)
142 PLN02693 IAA-amino acid hydrol 35.4 84 0.0018 33.9 6.3 63 61-142 49-115 (437)
143 PF08854 DUF1824: Domain of un 35.0 1.1E+02 0.0024 27.6 5.9 81 58-143 22-112 (125)
144 TIGR00715 precor6x_red precorr 34.1 66 0.0014 32.4 4.9 63 412-480 190-253 (256)
145 COG2257 Uncharacterized homolo 30.6 52 0.0011 28.0 2.9 23 404-426 30-52 (92)
146 cd07371 2A5CPDO_AB The alpha a 29.6 4.9E+02 0.011 26.1 10.4 82 393-485 79-162 (268)
147 cd07362 HPCD_like Class III ex 29.0 6.1E+02 0.013 25.5 11.9 78 401-485 88-167 (272)
148 KOG2275 Aminoacylase ACY1 and 28.3 65 0.0014 34.7 3.9 52 275-329 124-176 (420)
149 COG1015 DeoB Phosphopentomutas 28.1 63 0.0014 34.3 3.7 34 361-396 328-362 (397)
150 PRK03537 molybdate ABC transpo 27.5 76 0.0017 29.9 4.0 27 58-92 158-184 (188)
151 KOG2194 Aminopeptidases of the 27.2 70 0.0015 37.5 4.2 51 276-329 159-209 (834)
152 TIGR02298 HpaD_Fe 3,4-dihydrox 26.4 3.5E+02 0.0076 27.5 8.8 78 401-485 92-171 (282)
153 PRK10602 murein peptide amidas 26.0 4.7E+02 0.01 26.0 9.3 70 404-485 165-234 (237)
154 COG2352 Ppc Phosphoenolpyruvat 25.1 70 0.0015 37.4 3.6 29 400-428 573-605 (910)
155 cd08344 MhqB_like_N N-terminal 24.3 1.5E+02 0.0033 24.6 4.9 45 76-123 66-110 (112)
156 cd07372 2A5CPDO_B The beta sub 23.8 8E+02 0.017 25.1 11.4 83 402-486 95-180 (294)
157 cd07950 Gallate_Doxase_N The N 23.0 3.8E+02 0.0083 27.2 8.2 121 355-486 45-178 (277)
158 COG0496 SurE Predicted acid ph 22.0 81 0.0017 31.8 3.0 50 434-487 104-154 (252)
159 TIGR01891 amidohydrolases amid 21.9 92 0.002 32.3 3.6 54 71-141 15-68 (363)
No 1
>KOG2596 consensus Aminopeptidase I zinc metalloprotease (M18) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-118 Score=895.59 Aligned_cols=436 Identities=59% Similarity=0.952 Sum_probs=406.0
Q ss_pred cchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEE
Q 011000 55 SSSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHII 134 (496)
Q Consensus 55 ~~~~~~a~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi 134 (496)
....++|++|++|||+||||||||++++++|.++||++|.|++.|.++||+|||++||+++|+||.+|++|.+++||-||
T Consensus 12 ~~~~s~a~efl~fln~spTpfHav~e~k~~Ll~agF~~LsE~~~W~iepg~kyf~tRN~S~iiAFavG~ky~pgnGf~ii 91 (479)
T KOG2596|consen 12 ECKSSAAQEFLDFLNKSPTPFHAVQEFKERLLKAGFKELSEKSDWQIEPGGKYFVTRNGSSIIAFAVGGKYVPGNGFSII 91 (479)
T ss_pred hhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHccchhcccccCcccCCCceEEEEccCceEEEEeccCcccCCCceeEE
Confidence 34466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCceeeeeCCCCCCC--------------------------cEEEEEc-CCCcEEEEEEEcCCCeEEcCCCCccc
Q 011000 135 AAHTDSPCLKLKPKSASSKS--------------------------GRVIVRG-SDGSFLHKLVKVKRPLLRVPTLAIHL 187 (496)
Q Consensus 135 ~AH~Dspgl~VKpi~~~~~~--------------------------G~V~~~~-~~G~~~~~lv~~~~pv~vIp~laiHL 187 (496)
+||||||||+|||++..... |||.++. .+|++.++||+.++|+++||+|||||
T Consensus 92 gaHtDSpcLrlKP~Sk~s~~gylqVgV~tYGGgiw~tWfDRDLsvaGRvivk~~~~~~~~~~LV~v~rPllrIPtLAiHl 171 (479)
T KOG2596|consen 92 GAHTDSPCLRLKPVSKRSAEGYLQVGVETYGGGIWHTWFDRDLSVAGRVIVKEAGDGKLIHRLVDVKRPLLRIPTLAIHL 171 (479)
T ss_pred EecCCCcceeecccccccccceEEEEEeecCCccchhhccccccccceEEEEecCCcceeeeeecCCCceeeccceeeec
Confidence 99999999999999965433 9999985 35789999999999999999999999
Q ss_pred ccccccCCCCCCCccceeeeeeccCCcccCC---ccccCC--CCCCccCChhHHHHHHHHHcCCCCCceeEEeeeeeecC
Q 011000 188 DRTVNKDGFKPNLETQLIPLLATKSEETSVE---PKEKSS--TSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQ 262 (496)
Q Consensus 188 ~~~~~~~~~~~n~~~~L~~diG~~~~~~~~~---~~~~~~--~~~~~~~h~~~ll~~~a~~~gV~~gDiv~~dl~~~d~~ 262 (496)
+++.| ++|++|.+++|.|++|....+++++ +.++++ ..+.+++|++.||.++|+++|++++||++|||+++|.|
T Consensus 172 dr~~n-~~f~pn~EtqlvPil~t~~~~~~~~~e~~~~~~~~~~~~~~~~Hhp~Ll~liak~lg~~~edIvd~eL~l~Dtq 250 (479)
T KOG2596|consen 172 DRDVN-EGFKPNTETQLVPILGTAIPAEEEKTEKPSDDGDKPRNSSKGKHHPVLLGLIAKELGCTPEDIVDFELILYDTQ 250 (479)
T ss_pred CCccc-ccCCCCccceeeeeecccCchhhhcCCCCCCCCccccccccccccHHHHHHHHHHhCCCHHHhhheeeeeecCC
Confidence 99998 7899999999999999876542211 112222 36678899999999999999999999999999999999
Q ss_pred CccccCCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhh
Q 011000 263 PSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGS 342 (496)
Q Consensus 263 ~~~~~Gl~~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~ 342 (496)
|++++|+++|||.++|||||.||||++.||+++... .++++++.+.++++||||||||.+||||.|.|++++|+||..+
T Consensus 251 ~a~lgG~~~eFiFs~RLDnl~~sF~al~aLi~s~~~-~~l~~e~~ir~valfDnEEvGS~SaQGA~s~~l~~vl~Riss~ 329 (479)
T KOG2596|consen 251 KATLGGANDEFIFSPRLDNLLSSFCALQALIDSAEG-ESLENESGIRMVALFDNEEVGSDSAQGAGSPFLESVLRRISSL 329 (479)
T ss_pred chhhcCcccceeecccccchhhHHHHHHHHHHHhcC-CCcccCCCeEEEEeccchhhcchhhccCCCccHHHHHHHHHHh
Confidence 999999999999999999999999999999998654 3566677899999999999999999999999999999999998
Q ss_pred ccCCCCChhhHhhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCE
Q 011000 343 LAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPT 422 (496)
Q Consensus 343 ~~~~~~~~~~~~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~ 422 (496)
++. ....+.+++++||+||+||+||+||||+++|+++|+|.|++|||||+|+||||+||....++++++|+++++|+
T Consensus 330 ~~~---~~~~~~~ai~kSflvSADmaHa~hPNy~~kheenH~P~~h~G~vik~naNqryaTn~v~~~l~kevA~~~~vpl 406 (479)
T KOG2596|consen 330 FGS---FPTAFEEAIAKSFLVSADMAHAVHPNYSDKHEENHRPLLHGGPVIKVNANQRYATNSVGSALVKEVAELAKVPL 406 (479)
T ss_pred cCC---CchHHHHHhhhheeeehhhhhhcCCCchhhhhhccCCccCCCceEEEcCCcceeccchhHHHHHHHHHHcCCCc
Confidence 874 56789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhccccccccccc
Q 011000 423 QEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 495 (496)
Q Consensus 423 Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~~~~~~~~~~ 495 (496)
|.|++|||++||||||||+|+++||+|+|+|+|||+|||+||||+.+|++.++++|++||++|..++.++.+|
T Consensus 407 Q~fvVrNdspcGsTIGPiLAS~~G~RTlDlG~pqLsMHSiRe~~gs~dv~~~~~lFk~Ff~~f~sv~~~~~vd 479 (479)
T KOG2596|consen 407 QDFVVRNDSPCGSTIGPILASKTGIRTLDLGIPQLSMHSIREMCGSKDVEQAVKLFKGFFERFSSVESKLVVD 479 (479)
T ss_pred eeEEEecCCCCccccchhhhhhcCceeeecCchhhhhHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998775
No 2
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-110 Score=852.72 Aligned_cols=402 Identities=44% Similarity=0.744 Sum_probs=378.0
Q ss_pred HHHHH-HHHHHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEe
Q 011000 59 SIVGD-LLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (496)
Q Consensus 59 ~~a~~-~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH 137 (496)
+.+.+ |++||++||||||+|++++++|.++||.+|.|.+.|+.++||+||++|+|++||||.+|++|.+.+||.||+||
T Consensus 7 ~~~~~~f~~FI~~spTpyh~v~~i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~gssliAf~ig~~~~~~~gf~IigaH 86 (437)
T COG1362 7 ELAEDEFIDFISASPTPYHVVANIAERLLKAGFRELEEKDAWKDKPGGKYFVTRNGSSLIAFIIGKKWKLESGFRIIGAH 86 (437)
T ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHHcCchhhhhhhcccccCCCeEEEEcCCceEEEEEecCCCCCCCCeEEEEee
Confidence 35666 99999999999999999999999999999999999988889999999999999999999998788999999999
Q ss_pred ccCCceeeeeCCCCCCC--------------------------cEEEEEcCCCcEEEEEEEcCCCeEEcCCCCccccccc
Q 011000 138 TDSPCLKLKPKSASSKS--------------------------GRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTV 191 (496)
Q Consensus 138 ~Dspgl~VKpi~~~~~~--------------------------G~V~~~~~~G~~~~~lv~~~~pv~vIp~laiHL~~~~ 191 (496)
||||+|+|||+++.... |||.+++.++....++++.++||++||+|||||+|+.
T Consensus 87 tDSP~l~lKp~p~~~~~g~~~~~~e~YGG~~~~~WldrdLsiaGrv~~k~~~~~~~~~lv~~~~Pi~~IP~LaiHL~r~~ 166 (437)
T COG1362 87 TDSPRLRLKPNPDIEVEGYLQLGTEVYGGIILYTWLDRDLSIAGRVFVKDGTGKIISRLVDIDDPILRIPDLAIHLDRDV 166 (437)
T ss_pred cCCCCcccCCCchhhhcceeEEeeEecCCeeecceecCccceeeEEEEecCCCcceeeeccCCCCeeecCcchhhcCcch
Confidence 99999999999986544 9999995445677889999999999999999999998
Q ss_pred ccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeeeeecCCccccCCCC
Q 011000 192 NKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANN 271 (496)
Q Consensus 192 ~~~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~gV~~gDiv~~dl~~~d~~~~~~~Gl~~ 271 (496)
| +++++|+|++|.|++|..+.++ +++|+..+|+++++++||.++|+|++||.++|+|+++.+|+++
T Consensus 167 n-~~~~~n~~~~l~piig~~~~~~-------------~~~~~~~ll~~iae~~~v~~ed~vs~dL~~~~~~~a~~~G~~~ 232 (437)
T COG1362 167 N-KSFEINPQENLNPIIGVIPGEE-------------KNKVKASLLKLLAEQLGVEEEDFVSFDLILVDAQKARLVGADG 232 (437)
T ss_pred h-ccCccCccccceeeEeccCccc-------------ccchhHHHHHHHHHHhCCcHhhhhhceEEEecCCcceeeccch
Confidence 7 7899999999999999976321 2357899999999999999999999999999999999999999
Q ss_pred CeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhhccCCCCChh
Q 011000 272 EFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSET 351 (496)
Q Consensus 272 e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~~~~~~ 351 (496)
+||+++|||||+|||++++||+.+.+ .+.+.++++||||||||.|+|||.|+|++++|+||+.+++. +++
T Consensus 233 efi~a~rlDn~~~~~a~m~AL~~~~~-------~~~~~v~~~fD~EEIGS~s~~GAds~fL~~vLeri~~a~~~---~~~ 302 (437)
T COG1362 233 EFLSAPRLDNLICCHAGMEALLAAAN-------SDKTCVLALFDHEEIGSLSAQGADSPFLENVLERIILALGG---SRD 302 (437)
T ss_pred hhhccCCccchHHHHHHHHHHHhccC-------CCCceEEEEechhhcccccccCcCchhHHHHHHHHHHHccC---ChH
Confidence 99999999999999999999998743 35578999999999999999999999999999999998876 667
Q ss_pred hHhhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeccCC
Q 011000 352 SFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDM 431 (496)
Q Consensus 352 ~~~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~ 431 (496)
++.+++.||++||+||+||+||||+++||++|.|.||+|||||+++|+||+||+.+.++++++|+++|||||.|++|+|.
T Consensus 303 ~~~~~l~nS~~iSaD~ahaihPny~~~hd~~n~p~ln~G~vik~~an~ry~td~~~~a~~~~l~~~~~Vp~Q~f~~~~d~ 382 (437)
T COG1362 303 DHLRALANSFLISADVAHAIHPNYPEKHDPNNAPKLNKGPVIKVNANQRYATDSEGIALLRKLAQKAGVPWQVFVLRNDV 382 (437)
T ss_pred HHHHHHhhceeeehhhHhhcCCCCccccCcccCCccCCCceEEecCCCCcccCchHHHHHHHHHHHcCCceEEEEecccC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhh
Q 011000 432 GCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 484 (496)
Q Consensus 432 ~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~ 484 (496)
+|||||||++++++||+|||||+|+|+|||+||+++++|++.++++|++||++
T Consensus 383 ~~Gstigpi~aa~tGi~tIDiG~~~LsMHS~rE~~g~~D~~~~~~~~~aFf~~ 435 (437)
T COG1362 383 PCGSTIGPILAARTGIRTIDIGPALLSMHSIRELSGSADLYEAYKALSAFFEN 435 (437)
T ss_pred CCCcccchhHHhhcCCceeecchhhhhhccHHHHcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=100.00 E-value=5.5e-109 Score=879.40 Aligned_cols=433 Identities=49% Similarity=0.862 Sum_probs=390.6
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccc-CCCCeeEEE
Q 011000 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYS-VGNGFHIIA 135 (496)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~-~~~g~~mi~ 135 (496)
+++++++|++||++||||||||++++++|+++||++|+|++.|+++||+|||++|+|++|+||++|+++. +++|++|++
T Consensus 5 ~~~~~~~~~~Fl~~s~t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivg 84 (465)
T PTZ00371 5 ARELAQEFLNFINKTGSPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVG 84 (465)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999864 567999999
Q ss_pred EeccCCceeeeeCCCCCCC--------------------------cEEEEEcCCCcEEEEEEEcCCCeEEcCCCCccccc
Q 011000 136 AHTDSPCLKLKPKSASSKS--------------------------GRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDR 189 (496)
Q Consensus 136 AH~Dspgl~VKpi~~~~~~--------------------------G~V~~~~~~G~~~~~lv~~~~pv~vIp~laiHL~~ 189 (496)
||+|||||+|||+++...+ |||++++ +|++++++|+.++||++||+|||||+|
T Consensus 85 aHtDsP~lklKp~~~~~~~g~~~l~ve~YGG~l~~tW~dR~L~laGrV~~~~-~g~~~~~lv~~~~pv~~IP~LaiHl~r 163 (465)
T PTZ00371 85 AHTDSPCLRLKPNSKVTKEGFQQVGVETYGGGLWHTWFDRDLGLAGRVVYKK-DGKLEEKLIRINKPILRIPNLAIHLQT 163 (465)
T ss_pred EeccCCCccccCCCcccCCCEEEEeeEECCChhhccccCCCceeeeEEEEee-CCeEEEEEEeCCCCeEECCchhhhcCc
Confidence 9999999999999987644 9999997 578999999999999999999999999
Q ss_pred ccccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeeeeecCCccccCC
Q 011000 190 TVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGA 269 (496)
Q Consensus 190 ~~~~~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~gV~~gDiv~~dl~~~d~~~~~~~Gl 269 (496)
+++++++++|+|+||.|++|..+.++.. +++++.+.+++|+..|++++++++||++||+++|||++||.++++++|+
T Consensus 164 ~~n~~~~~~n~~~~l~pi~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~la~~~gv~~~Div~~dL~l~d~~~~~~~G~ 240 (465)
T PTZ00371 164 STERESFKPNKENHLKPIISTEVYEQLN---GKQDNDNSNNNHSAPLLKLIAKELGCSVEDIVDFDLCLMDTQPSCFGGL 240 (465)
T ss_pred cccccCCCcCccCcceeEEecCcccccc---cccccccccccchHHHHHHHHHHcCCCCCceEEEEEEeecCCcceEeec
Confidence 9874588999999999999876532100 0011112345788899999999999999999999999999999999999
Q ss_pred CCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhhccCCC-C
Q 011000 270 NNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEH-V 348 (496)
Q Consensus 270 ~~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~~-~ 348 (496)
+++||.|+|||||+|||++++||+++.....+ .+..+.++++||||||||+|++||+|.|+||+|+||+.+++... .
T Consensus 241 ~~e~i~s~rlDnr~~~~~~l~al~~~~~~~~~--~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~ 318 (465)
T PTZ00371 241 NEEFISSPRLDNLGSSFCAFKALTEAVESLGE--NSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNS 318 (465)
T ss_pred CCCeEEEecchhHHHHHHHHHHHHhccccccC--CCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhcccccc
Confidence 99999999999999999999999987531000 02346677789999999999999999999999999999887521 1
Q ss_pred ChhhHhhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEec
Q 011000 349 SETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVR 428 (496)
Q Consensus 349 ~~~~~~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r 428 (496)
+++.+.+++++|++||+||+||+||||+++|++.|.+.||+||+||++++|+|+||+.+.++++++|+++|||||.++.|
T Consensus 319 ~~~~~~~~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q~~~~~ 398 (465)
T PTZ00371 319 SDDSFAKLMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQEFVVK 398 (465)
T ss_pred chhHHHHHHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 26789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhccccccccccc
Q 011000 429 NDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 495 (496)
Q Consensus 429 ~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~~~~~~~~~~ 495 (496)
+|++||||+|+|++++.||||+|||+|+|||||||||++++|++++++++++||+.|..++.++.++
T Consensus 399 ~d~~~GsTig~i~~s~~Gi~tvDiGiP~l~MHS~rE~~~~~D~~~~~~l~~af~~~~~~~~~~~~~~ 465 (465)
T PTZ00371 399 NDSPCGSTIGPILSSNLGIRTVDIGIPQLAMHSIREMCGVVDIYYLVKLIKAFFTNYSKVDGSSLLD 465 (465)
T ss_pred CCCCCcchHHHHHHhCCCCcEEEechhhcccccHHHHccHHHHHHHHHHHHHHHHhhhhhcceEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999998877653
No 4
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=100.00 E-value=2e-108 Score=865.76 Aligned_cols=405 Identities=51% Similarity=0.830 Sum_probs=344.7
Q ss_pred HHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCceeee
Q 011000 67 YLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLK 146 (496)
Q Consensus 67 Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl~VK 146 (496)
||++||||||||++++++|+++||++|+|++.|+++||+|||++|+|++||||.+|+++++++|++|++||+||||||||
T Consensus 1 Fl~~spT~~Hav~~~~~~L~~~GF~eL~e~~~W~l~~ggkyy~~r~~ssliAF~vg~~~~~~~G~~ivgaHtDSP~lklK 80 (432)
T PF02127_consen 1 FLDKSPTPFHAVANAKERLEKAGFTELDETEKWDLKPGGKYYVTRNGSSLIAFAVGGKFPPGNGFRIVGAHTDSPCLKLK 80 (432)
T ss_dssp HHHTTSSHHHHHHHHHHHHHHTTHEESTTTSSTT--TTSEEEEEETTTEEEEEEEETTS-GCG-EEEEEEE---SEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCeEcccccccCCCCCCEEEEEeCCCEEEEEEeCCcCCcccceEEEEEecCCCCeeec
Confidence 89999999999999999999999999999999999999999999999999999999987777899999999999999999
Q ss_pred eCCCCCCC--------------------------cEEEEEcC-CCcEEEEEEEcCCCeEEcCCCCcccccccccCCCCCC
Q 011000 147 PKSASSKS--------------------------GRVIVRGS-DGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPN 199 (496)
Q Consensus 147 pi~~~~~~--------------------------G~V~~~~~-~G~~~~~lv~~~~pv~vIp~laiHL~~~~~~~~~~~n 199 (496)
|+++.... |||++++. .|+++.++++.++||++||+|||||+|+.| +++++|
T Consensus 81 p~~~~~~~g~~~l~ve~YGG~i~~tW~DR~L~laGrV~~k~~~~~~~~~~lv~~~~pv~~IP~LAiHL~r~~n-~~~~~n 159 (432)
T PF02127_consen 81 PNPEYESDGYAQLNVEVYGGGIWHTWFDRPLSLAGRVVVKDGDEGKPESKLVDIDRPVAIIPNLAIHLDREVN-EGFKLN 159 (432)
T ss_dssp EEEEEEETTEEEEEEEEESS--GGGGTTS-EEEEEEEEETTTTTEEEEEESCSTTS-BBBSS---GGGSTTTT-TS-CTT
T ss_pred CCCccccCCEEEEeeEcCCCcccccccCCccceeEEEEEeeCCCCceeEEEEeCCCCEEEeCCchhccccccc-ccCCcc
Confidence 99987543 99999875 356788899999999999999999999876 568999
Q ss_pred CccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeeeeecCCccccCCCCCeeeccCC
Q 011000 200 LETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRL 279 (496)
Q Consensus 200 ~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~gV~~gDiv~~dl~~~d~~~~~~~Gl~~e~I~s~~L 279 (496)
+|.||.|+++....... +.++++ .+++|+..|++++++++||+++||+++||++||+||++++|+++|||.|+||
T Consensus 160 ~q~~l~pi~~~~~~~~~--~~~~~~---~~~~~~~~ll~~la~~~gi~~~dIl~~DL~l~d~~~~~~~G~~~efI~s~rl 234 (432)
T PF02127_consen 160 KQKHLEPILGLSGESSL--PEDDEE---DKNRHKPSLLKLLAEELGIEEEDILDFDLYLYDAQPARIVGLDEEFISSPRL 234 (432)
T ss_dssp TSTTSGGEEEECCHHHH--HTTTSS---SSSHHHHHHHHHHHHHHT--GGGCCCEEEEEEEES--EEETTTTSEEEETTH
T ss_pred ccccccCeEeecccccc--cccccc---cccchhHHHHHHHHHHhCCCHHHhccceEEEEecCCCeEecCchhhhhccCc
Confidence 99999999998752100 000100 1357889999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhhccCCCCChhhHhhhccc
Q 011000 280 DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQ 359 (496)
Q Consensus 280 DNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~~~~~~~~~~~l~~ 359 (496)
|||+|||++|+||++.... .+.+.+.+.++++||||||||.|.|||.|.|++++|+||..+++. +.+.+++++++
T Consensus 235 Dnl~s~~a~l~Al~~~~~~--~~~~~~~~~v~~~fD~EEiGS~s~~GA~S~fl~~~l~ri~~~~~~---~~~~~~~~l~~ 309 (432)
T PF02127_consen 235 DNLASCYAALEALIDSSND--SLEPEDGTNVVVLFDNEEIGSESRQGADSPFLEDVLERILAALGG---SREFYRRILAN 309 (432)
T ss_dssp HHHHHHHHHHHHHHHHTSS--CCCCSSSEEEEEEESSGGGTSTSTTSTTSTHHHHHHHHHHHHCST---TTHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhhhcc--cccccCceEEEEEEcccccCCCccccccchHHHHHHHHHHHhcCC---CHHHHHHHhhc
Confidence 9999999999999998542 122245789999999999999999999999999999999999875 45677788999
Q ss_pred ceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHH
Q 011000 360 SFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGP 439 (496)
Q Consensus 360 S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~ 439 (496)
|++||+||+||+||||+++||++|+|.||+|||||++++|+|+||....++++++|+++|||||.|++|+|++||||+||
T Consensus 310 S~~lSaD~aHa~HPny~~~~d~~~~p~l~~G~viK~~a~q~yatd~~~~a~~~~i~~~~~ip~Q~f~~r~d~~~GsTiGp 389 (432)
T PF02127_consen 310 SFLLSADVAHAVHPNYPEKHDPNNQPLLNKGPVIKKNANQRYATDAASAAVFREICEKAGIPWQEFVNRSDDPGGSTIGP 389 (432)
T ss_dssp -EEEEE--EEB-BTTSGGGS-TTTSBSTTS-EEEESETTTTSSS-HHHHHHHHHHHHHHH--EEEEESSSTSSS--HHHH
T ss_pred CcEECcCcccccCCCcchhccccCCCcCCcccEEEEeCCCCcccCHHHHHHHHHHHHHcCCCeEEEEecCCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 440 ILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 440 i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
++++++||+|||||+|+|+|||+|||++++|++++++++++||
T Consensus 390 i~sa~~gi~tvDiG~P~LsMHS~rE~~g~~D~~~~~~~~~aFf 432 (432)
T PF02127_consen 390 ILSARLGIRTVDIGIPQLSMHSIRETAGKKDIYYLYKAFKAFF 432 (432)
T ss_dssp HHHHCCTSEEEEEE-EEESTTSSSEEEEHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEEechhhhhcccHHHHhccccHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999996
No 5
>PRK02813 putative aminopeptidase 2; Provisional
Probab=100.00 E-value=4.2e-105 Score=842.54 Aligned_cols=398 Identities=47% Similarity=0.773 Sum_probs=372.3
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEE
Q 011000 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (496)
Q Consensus 57 ~~~~a~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~A 136 (496)
.++++++|++||++||||||||++++++|+++||++|+|++.|+++||+|||++|+|++|+||++|+++.+++|++|++|
T Consensus 4 ~~~~~~~~~~fl~~s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~a 83 (428)
T PRK02813 4 ARAFAQDLLDFIDASPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGA 83 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999998655578999999
Q ss_pred eccCCceeeeeCCCCCCC--------------------------cEEEEEcCCCcEEEEEEEcCCCeEEcCCCCcccccc
Q 011000 137 HTDSPCLKLKPKSASSKS--------------------------GRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRT 190 (496)
Q Consensus 137 H~Dspgl~VKpi~~~~~~--------------------------G~V~~~~~~G~~~~~lv~~~~pv~vIp~laiHL~~~ 190 (496)
|+|||||+|||++..+++ |||++++. +++..++++.++||++||+|||||+++
T Consensus 84 H~DsP~l~lKp~~~~~~~g~~~l~ve~YGG~~~~tW~Dr~L~laGrV~~~~~-~~~~~~l~~~~~pv~~Ip~LaiHL~~~ 162 (428)
T PRK02813 84 HTDSPGLRVKPNPDTGEAGYLQLNVEVYGGPILNTWLDRDLSLAGRVVLRDG-NKPESRLVNIDRPILRIPNLAIHLNRE 162 (428)
T ss_pred eccCCCeeeccCCcccCCCEEEEeeEECCCchhccccCCCcccceEEEEecC-CEeEEEEEeCCCCeEEeCcchhccCcc
Confidence 999999999999987655 88888864 367888999999999999999999999
Q ss_pred cccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeeeeecCCccccCCC
Q 011000 191 VNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGAN 270 (496)
Q Consensus 191 ~~~~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~gV~~gDiv~~dl~~~d~~~~~~~Gl~ 270 (496)
++ +++++|+|.+|.|+++... +.++..|++++++++||++||+++||++++|++|++++|++
T Consensus 163 ~~-~g~~~n~~~~~~Pi~~~~~-----------------~~~~~~~l~~la~~~gi~~~Div~~dl~~~d~~~~~~~G~~ 224 (428)
T PRK02813 163 VN-EGLKLNPQKHLLPILLNGV-----------------GEKEGDFLELLAEELGVDADDILDFDLFLYDTQPGALIGAN 224 (428)
T ss_pred cc-cccCcccccCCcceecccc-----------------cccchHHHHHHHHHcCCCcCCEEEEEEEEEEcccceeeccC
Confidence 87 7899999999999974311 12346799999999999999999999999999999999999
Q ss_pred CCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhhccCCCCCh
Q 011000 271 NEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSE 350 (496)
Q Consensus 271 ~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~~~~~ 350 (496)
++||.|+|||||+|||++++||+++.. +.+.++++||||||||+|++||.+.|++++|+||+.++|. ++
T Consensus 225 ~e~i~s~~lDnr~~~~~~l~al~~~~~--------~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~---~~ 293 (428)
T PRK02813 225 GEFISSGRLDNLSSCHAGLEALLAAAS--------DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGG---DR 293 (428)
T ss_pred CCEEEEecchhHHHHHHHHHHHHhcCC--------CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcC---ch
Confidence 999999999999999999999998731 3478999999999999999999999999999999998875 67
Q ss_pred hhHhhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeccC
Q 011000 351 TSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRND 430 (496)
Q Consensus 351 ~~~~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D 430 (496)
+.+.+++++|++||+||+||.||||+++|++.|.+.||+||+||++++|+|+||+.+.++++++|+++|||||+++.|+|
T Consensus 294 ~~~~~~i~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~v~~~d 373 (428)
T PRK02813 294 EDFLRALARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNRSD 373 (428)
T ss_pred HHHHHhhCCCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhh
Q 011000 431 MGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 484 (496)
Q Consensus 431 ~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~ 484 (496)
++||||+|+|++++.||||+|||+|+|||||+|||++++|++++++|+++||+.
T Consensus 374 ~~gGstig~i~~s~~Gi~tvdiGiP~l~MHS~~E~~~~~D~~~~~~l~~~f~~~ 427 (428)
T PRK02813 374 MPCGSTIGPITAARLGIRTVDVGAPMLAMHSARELAGVKDHAYLIKALTAFFSG 427 (428)
T ss_pred CCCccHHHHHHHhCCCCcEEEeChhhcccccHHHHccHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999964
No 6
>PRK02256 putative aminopeptidase 1; Provisional
Probab=100.00 E-value=1.9e-104 Score=840.94 Aligned_cols=424 Identities=24% Similarity=0.351 Sum_probs=380.5
Q ss_pred CCCccccCCCCCccccccccccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecC
Q 011000 34 SSNRYRPRTLHNFSTSGIAQSSSSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM 113 (496)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g 113 (496)
.+|.|++.++|. .++......+.+++++|++||++||||||||++++++|+++||++|+|++ ++++|++||++|+|
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Fl~~sptp~Hav~~~~~~L~~~GF~el~e~~--~l~~g~kyy~~r~~ 78 (462)
T PRK02256 3 KKLTYKKKNAWE--KYSEEEKEEIFAFAEDYKDFLSKCKTEREAVKEIIELAEEKGFINLEEII--GLKPGDKVYAVNRG 78 (462)
T ss_pred ccccccccChhh--hCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccc--ccCCCCEEEEEcCC
Confidence 456899999999 65555556667799999999999999999999999999999999999999 57899999999999
Q ss_pred cEEEEEEeCCcccCCCCeeEEEEeccCCceeeeeCCCCCCC--------------------------cEEEEEcCCCc-E
Q 011000 114 SCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKS--------------------------GRVIVRGSDGS-F 166 (496)
Q Consensus 114 ~~liA~~~G~~~~~~~g~~mi~AH~Dspgl~VKpi~~~~~~--------------------------G~V~~~~~~G~-~ 166 (496)
++|+||++|+++ +++|++|++||||||||||||+++...+ |||++++ |. +
T Consensus 79 ssliAf~ig~~~-~~~g~~iv~aHtDsP~lklKP~~~~~~~g~~~l~ve~YGG~l~~tW~DRdL~lAGrV~~~~--~~~~ 155 (462)
T PRK02256 79 KSVALAVIGKEP-LEEGLNIIGAHIDSPRLDLKPNPLYEDEGLALLKTHYYGGIKKYQWVAIPLALHGVVVKKD--GTKV 155 (462)
T ss_pred CEEEEEEeCCCC-CCCceEEEEEecCCCCceecCCCccccCCeeEeCeEecCCcccccccCCCceeeeEEEEec--CCEE
Confidence 999999999874 4679999999999999999999987544 9999985 44 4
Q ss_pred EEEE-EEcCCCeEEcCCCCccccccccc-CCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHc
Q 011000 167 LHKL-VKVKRPLLRVPTLAIHLDRTVNK-DGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQEL 244 (496)
Q Consensus 167 ~~~l-v~~~~pv~vIp~laiHL~~~~~~-~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~ 244 (496)
..++ ++.++|+++||+|||||+|+.|+ +++++|+|+||.|++|..+.+. ++ .++|+..|++++++++
T Consensus 156 ~~~l~~~~~~pi~~IP~LAiHl~r~~n~~~~~~~n~q~~l~pi~~~~~~~~-------~~----~~~~~~~ll~~la~~~ 224 (462)
T PRK02256 156 EIVIGEDENDPVFTISDLLPHLAKDQMEKKASEAIEGEKLNILIGSIPLED-------EE----KEKVKLNILKLLNEKY 224 (462)
T ss_pred EEEecccCCCCeEEcCchhhhhCchhhhccccccCccCCcceeeccCCccc-------cc----cccchHHHHHHHHHHh
Confidence 4455 57789999999999999999762 3679999999999999754221 00 1346788999999999
Q ss_pred CCCCCceeEEeeeeeecCCccccCCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 245 GCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 245 gV~~gDiv~~dl~~~d~~~~~~~Gl~~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
||+++||++|||++||+||++++|+++|||+|+|||||+|||++++||+++.+ .+.+.++++||||||||+|+
T Consensus 225 ~v~~~dI~~~DL~l~d~q~~~~~G~~~efI~s~rLDNr~~~~~~leal~~~~~-------~~~~~~~~~~dqEEVGs~ga 297 (462)
T PRK02256 225 GITEEDFVSAELEVVPAGKARDVGLDRSLIGAYGQDDRVCAYTSLEALLELEN-------PEKTAVVLLVDKEEIGSEGN 297 (462)
T ss_pred CCCHHHeeeceEEEecCCCcceeccccceeeccccccHHHHHHHHHHHHhccc-------CCCeEEEEEEcccccCCcch
Confidence 99999999999999999999999999999999999999999999999998742 24578999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhccCCCCChhhHhhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEE-E-cCCCCcc
Q 011000 325 QGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIK-H-NANQRYA 402 (496)
Q Consensus 325 ~gA~s~~~~d~l~ri~~~~~~~~~~~~~~~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk-~-~~~~~y~ 402 (496)
+||+|.|++++|+||..+++. ..+++++.+++++|++||+||+||.||||++++++.|.+.||+||+|| + +++|+|+
T Consensus 298 ~gA~s~~l~~~l~Ri~~~~~p-d~~~~~~~~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~ 376 (462)
T PRK02256 298 TGAQSRFFENFVAELLAKTEG-NYSDLKLRRALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYG 376 (462)
T ss_pred hhhcchhHHHHHHHHHHhcCC-CcchHHHHHHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCccc
Confidence 999999999999999987752 124678999999999999999999999999999999999999999996 6 5899999
Q ss_pred c---CHHHHHHHHHHHHHCCCCEeEE-EeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHH
Q 011000 403 T---SGVTAFLFKEIAKLHNLPTQEF-VVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 478 (496)
Q Consensus 403 t---~~~~~~~l~~ia~~~~Ip~Q~~-~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~ 478 (496)
+ |+.+.++++++|+++|||||.+ +.|||++||||+|++++ ++||||+|||+|+|||||+|||++++|++++++|+
T Consensus 377 t~~~~~~~~~~i~~iA~~~~Ip~Q~~~~~r~d~~~GgTig~~~s-~~Gi~tvdiGiP~l~MHS~rE~~~~~D~~~~~~ll 455 (462)
T PRK02256 377 ANDANAEFVAEVRNLFNKNNVVWQTAELGKVDQGGGGTIAKFLA-NYGMEVIDCGVALLSMHSPFEIASKADIYETYKAY 455 (462)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCcChHHHHHc-CCCCcEEEechhhhccccHHHHhhHHHHHHHHHHH
Confidence 9 9999999999999999999996 66999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHhh
Q 011000 479 KAFYES 484 (496)
Q Consensus 479 ~af~~~ 484 (496)
++||++
T Consensus 456 ~~f~~~ 461 (462)
T PRK02256 456 KAFLEE 461 (462)
T ss_pred HHHHhh
Confidence 999964
No 7
>PRK09864 putative peptidase; Provisional
Probab=100.00 E-value=9.2e-58 Score=471.26 Aligned_cols=303 Identities=17% Similarity=0.108 Sum_probs=253.7
Q ss_pred ccC-CCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCceeeeeCCCCCCCcEEEEEcCCCc----E--EEEEEEc
Q 011000 101 LKP-GGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGRVIVRGSDGS----F--LHKLVKV 173 (496)
Q Consensus 101 l~~-g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl~VKpi~~~~~~G~V~~~~~~G~----~--~~~lv~~ 173 (496)
+++ ++++++|+.| |++|.. |++ ...+|++|||||+||+|+.|.+ +|++.+.+.||- + .+++|.+
T Consensus 30 l~~~~dev~~D~~G-Nli~~~-g~~----~~kvml~AHmDevG~mV~~I~~---~G~l~~~~lGG~~~~~l~~q~V~i~t 100 (356)
T PRK09864 30 LEPCVNEITFDGLG-SFVARK-GNK----GPKVAVVGHMDEVGFMVTHIDE---SGFLRFTTIGGWWNQSMLNHRVTIRT 100 (356)
T ss_pred HHHhCCEEEECCCC-CEEEEe-CCC----CcEEEEEecccccCEEEEEECC---CCeEEEEeCCCcCccccCCCEEEEEe
Confidence 455 5778999999 999975 532 2379999999999999999875 899999998652 1 1234544
Q ss_pred -CC--CeEEcCCCCcccccccccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCc
Q 011000 174 -KR--PLLRVPTLAIHLDRTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDD 250 (496)
Q Consensus 174 -~~--pv~vIp~laiHL~~~~~~~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~gV~~gD 250 (496)
++ ..|+|+.++||+.++++++ +..+.++|++|+|+.+++ +++++||++||
T Consensus 101 ~~g~~v~GVig~~~~H~~~~~~~~--k~~~~~~l~IDiGa~s~e-------------------------e~~~~GV~vGD 153 (356)
T PRK09864 101 HKGVKIPGVIGSVAPHALTEKQKQ--QPLSFDEMFIDIGANSRE-------------------------EVEKRGVEIGD 153 (356)
T ss_pred CCCCEEEEEEeCCccccCChhHcc--cCCChhHEEEEeCCCCHH-------------------------HHHhcCCCCCC
Confidence 34 3599999999999876533 567789999999998864 67889999999
Q ss_pred eeEEeeeeeecCCccccCCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCC
Q 011000 251 IASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAP 330 (496)
Q Consensus 251 iv~~dl~~~d~~~~~~~Gl~~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~ 330 (496)
+|+|+..+.. ++++++.||+||||+|||+++++|.+++. .+...+++|++|||||.|||+.|++.
T Consensus 154 ~v~~~~~~~~--------l~~~~i~~kalDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~ 218 (356)
T PRK09864 154 FISPEANFAC--------WGEDKVVGKALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEH 218 (356)
T ss_pred EEEECCCcEE--------EcCCEEEEEeCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhc
Confidence 9999998865 34788999999999999999999988742 24578999999999999999999988
Q ss_pred cHHHHHHHHHhhccCCCCChhhHhhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHH
Q 011000 331 TMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFL 410 (496)
Q Consensus 331 ~~~d~l~ri~~~~~~~~~~~~~~~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~ 410 (496)
+.|| ++|++|++++.|. |+........+||+||+|+.++++ .++|+.+.++
T Consensus 219 i~PD--------------------------iaIavDvt~~~d~--p~~~~~~~~~~lG~Gp~i~~~D~~-~i~~~~l~~~ 269 (356)
T PRK09864 219 IKPD--------------------------VVIVLDTAVAGDV--PGIDNIKYPLKLGQGPGLMLFDKR-YFPNQKLVAA 269 (356)
T ss_pred CCCC--------------------------EEEEEecccCCCC--CCCcccccccccCCCCeEEEccCC-ccCCHHHHHH
Confidence 6655 8999999999762 222222235789999999998886 8889999999
Q ss_pred HHHHHHHCCCCEeEEEeccCCCCCCC-hHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhccc
Q 011000 411 FKEIAKLHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 487 (496)
Q Consensus 411 l~~ia~~~~Ip~Q~~~~r~D~~gG~T-ig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~~ 487 (496)
++++|+++|||||+.+. ++||| .+.++.++.|+||+.||+|+||||||.||++++|++++++|+.+|++++.+
T Consensus 270 l~~~A~~~~Ip~Q~~~~----~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~~Ll~~~~~~l~~ 343 (356)
T PRK09864 270 LKSCAAHNDLPLQFSTM----KTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLIRDFLTTLTA 343 (356)
T ss_pred HHHHHHHcCCCceEEEc----CCCCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999775 44566 678999999999999999999999999999999999999999999988754
No 8
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-56 Score=456.28 Aligned_cols=316 Identities=22% Similarity=0.208 Sum_probs=264.5
Q ss_pred CCccccccccc--cccC-CCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCceeeeeCCCCCCCcEEEEEcCCCc
Q 011000 89 GFELLNENDEW--ELKP-GGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGRVIVRGSDGS 165 (496)
Q Consensus 89 GF~~l~e~~~w--~l~~-g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl~VKpi~~~~~~G~V~~~~~~G~ 165 (496)
|||+. -++.| ++++ ++++.+|+.| ||||.+.|++ +.+.+||+|||||+|||||.|.+ +|++.+.+.||-
T Consensus 19 G~E~e-Vr~~~~~el~~~~~ev~~D~lG-nlia~~~g~~---g~~~imi~AHmDEiG~mV~~I~~---~G~Lr~~~IGG~ 90 (355)
T COG1363 19 GYEEE-VRDVLKEELEPLGDEVEVDRLG-NLIAKKGGKN---GPPKVMIAAHMDEIGFMVKEIED---DGFLRFVPIGGW 90 (355)
T ss_pred CcHHH-HHHHHHHHHHHhCCceEEcCCC-cEEEEecCCC---CCccEEEEeecceeeeeEEEECC---CceEEEEEcCCc
Confidence 66654 24444 4666 6889999999 9999887732 22359999999999999999875 899999998762
Q ss_pred ----EE--EEEEEc-C-CC-eEEcCCCCccccccc-ccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhH
Q 011000 166 ----FL--HKLVKV-K-RP-LLRVPTLAIHLDRTV-NKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQ 235 (496)
Q Consensus 166 ----~~--~~lv~~-~-~p-v~vIp~laiHL~~~~-~~~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (496)
+. .+.|.+ + ++ .|+|++.+||+.++. +++ +..+.++|++|+|+.+++
T Consensus 91 ~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~--~~~~~~el~iDiga~ske--------------------- 147 (355)
T COG1363 91 DPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERK--KPPEWDELFIDIGASSKE--------------------- 147 (355)
T ss_pred ChhhccCcEEEEEeCCCcEEeeeEcccCccccCcccccc--CCCchhhEEEECCcCCHH---------------------
Confidence 11 223433 2 24 599999999999754 322 446789999999998875
Q ss_pred HHHHHHHHcCCCCCceeEEeeeeeecCCccccCCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEe
Q 011000 236 LMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFD 315 (496)
Q Consensus 236 ll~~~a~~~gV~~gDiv~~dl~~~d~~~~~~~Gl~~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~d 315 (496)
+++++||++||+++|+..+..+ ++++|.|++||||+||+++|+++.++... +.+.+.++++++
T Consensus 148 ----ea~~lGI~vGd~v~~~~~~~~l--------~~~~i~skalDdR~gva~lle~lk~l~~~-----~~~~~vy~v~tv 210 (355)
T COG1363 148 ----EAEELGIRVGDFVVFDPRFREL--------ANGRVVSKALDDRAGVAALLELLKELKGI-----ELPADVYFVASV 210 (355)
T ss_pred ----HHHhcCCCCCCEEEEcCceEEe--------cCCcEEeeeccchHhHHHHHHHHHHhccC-----CCCceEEEEEec
Confidence 7899999999999999998874 56899999999999999999999998421 246689999999
Q ss_pred ccccCcccccccCCCcHHHHHHHHHhhccCCCCChhhHhhhcccceEEEEecCCCCC-CCCCccccCCCCCcCCCCcEEE
Q 011000 316 NEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIK 394 (496)
Q Consensus 316 qEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~~~~~~~~~~~l~~S~~iS~DvahA~~-Pn~~~~~~~~~~~~LG~GpvIk 394 (496)
|||||.|||+.++..+.|| ++|++|++++.+ |..+ ....+||+||+|+
T Consensus 211 qEEVGlrGA~~~a~~i~pd--------------------------~aiavd~~~~~d~~~~~-----~~~~~lg~Gp~i~ 259 (355)
T COG1363 211 QEEVGLRGAKTSAFRIKPD--------------------------IAIAVDVTPAGDTPGVP-----KGDVKLGKGPVIR 259 (355)
T ss_pred chhhccchhhccccccCCC--------------------------EEEEEecccccCCCCCc-----ccccccCCCCEEE
Confidence 9999999999999987665 999999999987 5544 3468999999999
Q ss_pred EcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCC-hHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHH
Q 011000 395 HNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDI 473 (496)
Q Consensus 395 ~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~T-ig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~ 473 (496)
+.+++ ...|+.+..+|.++|+++|||||..+. ++||| ++.++.++.||||+.||+|+|||||+.|+++.+|+++
T Consensus 260 ~~D~~-~~~~~~l~~~L~~~A~~~~Ip~Q~~v~----~~ggTDA~a~~~~g~gvpta~Igip~ry~Hs~~e~~~~~D~~~ 334 (355)
T COG1363 260 VKDAS-GIYHPKLRKFLLELAEKNNIPYQVDVS----PGGGTDAGAAHLTGGGVPTALIGIPTRYIHSPVEVAHLDDLEA 334 (355)
T ss_pred EEcCC-CCCCHHHHHHHHHHHHHcCCCeEEEec----CCCCccHHHHHHcCCCCceEEEecccccccCcceeecHHHHHH
Confidence 99886 667999999999999999999999986 44555 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 011000 474 AYRHFKAFYESFSSI 488 (496)
Q Consensus 474 ~~~l~~af~~~~~~~ 488 (496)
+++|+.+|++++..-
T Consensus 335 ~~~Ll~~~i~~~~~~ 349 (355)
T COG1363 335 TVKLLVAYLESLDRE 349 (355)
T ss_pred HHHHHHHHHHhcchh
Confidence 999999999987653
No 9
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=100.00 E-value=1.3e-54 Score=448.22 Aligned_cols=303 Identities=14% Similarity=0.050 Sum_probs=249.4
Q ss_pred ccC-CCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCceeeeeCCCCCCCcEEEEEcCCCc----E--EEEEEEc
Q 011000 101 LKP-GGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGRVIVRGSDGS----F--LHKLVKV 173 (496)
Q Consensus 101 l~~-g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl~VKpi~~~~~~G~V~~~~~~G~----~--~~~lv~~ 173 (496)
+++ ++++++|+.| |++|.+.|+.. +.+.+|+.||||++||+|+.|.+ +|++.+.+.||- + .++.|.+
T Consensus 28 l~~~~~~v~~D~~G-Nvia~~~g~~~--~~~~vml~AHmDeVGf~V~~I~~---~G~l~~~~vGG~~~~~l~gq~V~i~t 101 (350)
T TIGR03107 28 ITPLVDQVETDGLG-GIFGIKESQVE--NAPRVMVAAHMDEVGFMVSQIKP---DGTFRVVELGGWNPLVVSSQRFTLFT 101 (350)
T ss_pred HHhhCCEEEECCCC-CEEEEecCCCC--CCCEEEEEecccEeCEEEEEECC---CceEEEEeCCCccccccCCcEEEEEe
Confidence 444 5678899999 99998766311 12379999999999999999876 899999998752 1 1234443
Q ss_pred -CC--CeEEcCCCCcccccccc-cCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCC
Q 011000 174 -KR--PLLRVPTLAIHLDRTVN-KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTD 249 (496)
Q Consensus 174 -~~--pv~vIp~laiHL~~~~~-~~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~gV~~g 249 (496)
++ ..|||+.++||+.++++ ++ +..+.++|++|+|+.+++ +++++||++|
T Consensus 102 ~~g~~i~GViG~~~~Hl~~~~~~~~--~~~~~~~l~IDiGa~ske-------------------------e~~~~GI~vG 154 (350)
T TIGR03107 102 RKGKKYPVISGSVPPHLLRGSSGGP--QLPAVSDILFDGGFTNKD-------------------------EAWSFGVRPG 154 (350)
T ss_pred CCCCEEEEEEeCCcccccChhhccc--ccCChhhEEEEeCCCCHH-------------------------HHHhcCCCCC
Confidence 34 34999999999987643 22 556779999999998865 7789999999
Q ss_pred ceeEEeeeeeecCCccccCCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCC
Q 011000 250 DIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGA 329 (496)
Q Consensus 250 Div~~dl~~~d~~~~~~~Gl~~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s 329 (496)
|+|+|+..+.... ++.++.|++||||+|||+++++|.+++.. +.+...+++|++|||||.|||+.|++
T Consensus 155 d~v~~~~~~~~~~-------~~~~i~~kalDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~ 222 (350)
T TIGR03107 155 DVIVPQTETILTA-------NGKNVISKAWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTT 222 (350)
T ss_pred CEEEECCCeEEEc-------CCCEEEEeccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHh
Confidence 9999998886531 35779999999999999999999988542 13457899999999999999999998
Q ss_pred CcHHHHHHHHHhhccCCCCChhhHhhhcccceEEEEecCCCCC-CCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHH
Q 011000 330 PTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTA 408 (496)
Q Consensus 330 ~~~~d~l~ri~~~~~~~~~~~~~~~~~l~~S~~iS~DvahA~~-Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~ 408 (496)
.+.|| ++|++|++++.+ |... + ..||+||+|+.++++ ...|+.+.
T Consensus 223 ~i~pD--------------------------~aI~vDv~~~~d~~~~~------~-~~lg~Gp~i~~~D~~-~i~~~~l~ 268 (350)
T TIGR03107 223 KFNPD--------------------------IFFAVDCSPAGDIYGDQ------G-GKLGEGTLLRFFDPG-HIMLPRMK 268 (350)
T ss_pred hCCCC--------------------------EEEEEecCCcCCCCCCC------c-cccCCCceEEEecCC-CCCCHHHH
Confidence 86554 999999999876 3221 1 689999999998886 88899999
Q ss_pred HHHHHHHHHCCCCEeEEEeccCCCCCCC-hHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhccc
Q 011000 409 FLFKEIAKLHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 487 (496)
Q Consensus 409 ~~l~~ia~~~~Ip~Q~~~~r~D~~gG~T-ig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~~ 487 (496)
++++++|+++|||||+ .. .+||| .+.++.++.|+||+.||+|+|||||+.|+++++|++++++|+.+|++.+..
T Consensus 269 ~~l~~~A~~~~I~~Q~-~~----~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~Ll~~~i~~l~~ 343 (350)
T TIGR03107 269 DFLLTTAEEAGIKYQY-YV----AKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQAFLQAIVKKLDR 343 (350)
T ss_pred HHHHHHHHHcCCCcEE-ec----CCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999998 43 34566 667888899999999999999999999999999999999999999988754
No 10
>PRK09961 exoaminopeptidase; Provisional
Probab=100.00 E-value=3.1e-52 Score=430.69 Aligned_cols=292 Identities=14% Similarity=0.079 Sum_probs=238.3
Q ss_pred CeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCceeeeeCCCCCCCcEEEEEcCCCc----E--EEEEEEc-CC--
Q 011000 105 GGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGRVIVRGSDGS----F--LHKLVKV-KR-- 175 (496)
Q Consensus 105 ~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl~VKpi~~~~~~G~V~~~~~~G~----~--~~~lv~~-~~-- 175 (496)
+++.+|+.| |++|...|++ .+.+|+.||||++||+|+.|.+ +|++.+.+.||- + .+++|.+ ++
T Consensus 35 ~~v~~D~~G-nvi~~~~g~~----~~~v~l~aHmDevg~~V~~I~~---~G~l~~~~vGG~~~~~~~~~~v~i~~~~g~~ 106 (344)
T PRK09961 35 KEVRFDGLG-SVLIRLNEST----GPKVMICAHMDEVGFMVRSISR---EGAIDVLPVGNVRMAARQLQPVRITTREECK 106 (344)
T ss_pred CEEEECCCC-CEEEEEcCCC----CCEEEEEeccceeceEEEEECC---CceEEEEeCCCccccccCCCEEEEEeCCCCE
Confidence 456668888 8999664532 2379999999999999999876 799999998652 1 1234444 33
Q ss_pred CeEEcCCCCcccccccccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEe
Q 011000 176 PLLRVPTLAIHLDRTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIE 255 (496)
Q Consensus 176 pv~vIp~laiHL~~~~~~~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~gV~~gDiv~~d 255 (496)
..|+|. ..+ + + .+.++|++|+|+.+++ +++++||++||+++||
T Consensus 107 i~Gvi~--------~~~-~--~-~~~~~l~iDiG~~s~e-------------------------e~~~~GI~~Gd~v~~~ 149 (344)
T PRK09961 107 IPGLLN--------GDR-Q--G-NDVSAMRVDIGARSYD-------------------------EVMQAGIRPGDRVTFD 149 (344)
T ss_pred eeEEEC--------hhh-c--C-CCHHHEEEEcCCCCHH-------------------------HHHhcCCCCCCEEEEc
Confidence 458881 111 1 4 4668999999998764 6788999999999999
Q ss_pred eeeeecCCccccCCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHH
Q 011000 256 LNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQA 335 (496)
Q Consensus 256 l~~~d~~~~~~~Gl~~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~ 335 (496)
..++.. +++++.|++||||+|||+++++|+++++. +.+...+++||+|||||+|||++|++.+.|
T Consensus 150 ~~~~~~--------~~~~i~gkalDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i~p-- 214 (344)
T PRK09961 150 TTFQVL--------PHQRVMGKAFDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAVSP-- 214 (344)
T ss_pred ceeEEe--------cCCEEEEeechhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhccCC--
Confidence 999874 46789999999999999999999987532 124567899999999999999999988554
Q ss_pred HHHHHhhccCCCCChhhHhhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHH
Q 011000 336 IRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIA 415 (496)
Q Consensus 336 l~ri~~~~~~~~~~~~~~~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia 415 (496)
+++|++|+++ +|++++ .+..+.++||+||+|+.++. ++++|+.+.++++++|
T Consensus 215 ------------------------d~~I~vDv~~--~~d~~~-~~~~~~~~lg~Gp~i~~~D~-~~i~~~~l~~~l~~~A 266 (344)
T PRK09961 215 ------------------------DVAIVLDTAC--WAKNFD-YGAANHRQIGNGPMLVLSDK-SLIAPPKLTAWIETVA 266 (344)
T ss_pred ------------------------CEEEEEeccC--CCCCCC-CCCCcccccCCCceEEEccC-CcCCCHHHHHHHHHHH
Confidence 5999999997 556665 33444689999999999866 5999999999999999
Q ss_pred HHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhccc
Q 011000 416 KLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 487 (496)
Q Consensus 416 ~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~~ 487 (496)
++++||+|..+.. +||+++++++.++.|+||+++|+|+|||||++|+++++|++++++|+.+|++.+..
T Consensus 267 ~~~~Ip~Q~~~~~---ggGTDa~~~~~~~~Giptv~ig~p~ry~Hs~~E~v~~~D~~~~~~Ll~~~i~~l~~ 335 (344)
T PRK09961 267 AEIGIPLQADMFS---NGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMIQLLSALIQRLTR 335 (344)
T ss_pred HHcCCCcEEEecC---CCcchHHHHHHhCCCCCEEEechhhhcccChhheEEHHHHHHHHHHHHHHHHHcCH
Confidence 9999999986541 34455788999999999999999999999999999999999999999999987754
No 11
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=100.00 E-value=6.4e-52 Score=419.13 Aligned_cols=281 Identities=22% Similarity=0.203 Sum_probs=221.1
Q ss_pred EEEEEEeCCcccCCCCeeEEEEeccCCceeeeeCCCCCCCcEEEEEcCCCc----E--EEEEEEcCC--CeEEcCCCCcc
Q 011000 115 CLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGRVIVRGSDGS----F--LHKLVKVKR--PLLRVPTLAIH 186 (496)
Q Consensus 115 ~liA~~~G~~~~~~~g~~mi~AH~Dspgl~VKpi~~~~~~G~V~~~~~~G~----~--~~~lv~~~~--pv~vIp~laiH 186 (496)
||||.+.|++ +.+.+||.|||||+||+|+.|.+ +|++.+.+.||- + .+++|.+.+ ..|+|+.++||
T Consensus 2 nvi~~~~g~~---~~~~vmi~AHmDEiG~iV~~I~~---~G~l~~~~lGg~~~~~l~gq~v~i~~~~g~i~Gvig~~~~H 75 (292)
T PF05343_consen 2 NVIARKKGKE---GGPKVMIAAHMDEIGFIVRHIDD---DGFLRFVPLGGIDPRVLPGQRVRIHTRDGDIPGVIGSKPPH 75 (292)
T ss_dssp -EEEEECSSC---SSSEEEEEEE--B-EEEEEEEET---TSEEEEEEESS--GGGTTTEEEEEEETTEEEEEEEEE--GG
T ss_pred cEEEEECCCC---CCceEEEEEccceeeEEEEEECC---CCEEEEEEcCCcCccccCCCEEEEEcCCcEEEEEEcCCCCc
Confidence 8999987722 24579999999999999999876 799999987651 1 244555533 46999999999
Q ss_pred cccccccCCCCCCCccceeeeeeccCCcccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeeeeecCCccc
Q 011000 187 LDRTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCL 266 (496)
Q Consensus 187 L~~~~~~~~~~~n~~~~L~~diG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~a~~~gV~~gDiv~~dl~~~d~~~~~~ 266 (496)
+.++.+++ +..+.++|++|+|+++++ +++++||++||+++|+..+...
T Consensus 76 ~~~~~~~~--~~~~~~~l~iDiGa~s~e-------------------------e~~~~GV~iGd~v~~~~~~~~~----- 123 (292)
T PF05343_consen 76 LQSEEERK--KVPKWDDLFIDIGASSKE-------------------------EVEELGVRIGDPVVFDPPFREL----- 123 (292)
T ss_dssp GCCHHHHH--STTEGGGEEEECSGSSHH-------------------------HHHHTTS-TT-EEEES---EEE-----
T ss_pred ccChhhcc--cCCCcceEEEEeccCCHH-------------------------HHHhCCCCCCCEEeecCCeEEe-----
Confidence 99865433 455679999999998864 7789999999999999998874
Q ss_pred cCCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhhccCC
Q 011000 267 GGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHE 346 (496)
Q Consensus 267 ~Gl~~e~I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~ 346 (496)
++.+|.|++||||+|||+++++|.++++. . .+...+++|++|||||.|||+.|+..+
T Consensus 124 ---~~~~i~gkalDdR~g~~~lle~l~~l~~~--~---~~~~v~~v~tvqEEvG~rGA~~aa~~i--------------- 180 (292)
T PF05343_consen 124 ---GNGRIVGKALDDRAGCAVLLELLRELKEK--E---LDVDVYFVFTVQEEVGLRGAKTAAFRI--------------- 180 (292)
T ss_dssp ---TTTEEEETTHHHHHHHHHHHHHHHHHTTS--S----SSEEEEEEESSCTTTSHHHHHHHHHH---------------
T ss_pred ---CCCEEEEEeCCchhHHHHHHHHHHHHhhc--C---CCceEEEEEEeeeeecCcceeeccccc---------------
Confidence 46779999999999999999999988653 1 236789999999999999999987664
Q ss_pred CCChhhHhhhcccceEEEEecCCCCC-CCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEE
Q 011000 347 HVSETSFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEF 425 (496)
Q Consensus 347 ~~~~~~~~~~l~~S~~iS~DvahA~~-Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~ 425 (496)
.++++|++|++++.+ |..++. ...||+||+|++.+.. +..|+.+.++|+++|++++||||+.
T Consensus 181 -----------~PD~ai~vD~~~a~d~~~~~~~-----~~~lG~Gp~i~~~D~~-~i~~~~l~~~l~~~A~~~~Ip~Q~~ 243 (292)
T PF05343_consen 181 -----------KPDIAIAVDVTPAGDTPGSDEK-----EQGLGKGPVIRVGDSS-MIPNPKLVDKLREIAEENGIPYQRE 243 (292)
T ss_dssp ------------CSEEEEEEEEEESSSTTSTTT-----TSCTTS-EEEEEEETT-EESHHHHHHHHHHHHHHTT--EEEE
T ss_pred -----------CCCEEEEEeeeccCCCCCCchh-----hccCCCCcEEEEccCC-CCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 456999999999986 544332 1229999999999886 8889999999999999999999997
Q ss_pred EeccCCCCCCC-hHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHH
Q 011000 426 VVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRH 477 (496)
Q Consensus 426 ~~r~D~~gG~T-ig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l 477 (496)
+. .+||| .+.++.++.|+||+.||+|+|||||+.|+++++|++++++|
T Consensus 244 ~~----~~ggTDa~~~~~~~~Gi~t~~i~iP~ry~Hs~~e~~~~~Di~~~~~L 292 (292)
T PF05343_consen 244 VF----SGGGTDAGAIQLSGGGIPTAVISIPCRYMHSPVEVIDLDDIEATIDL 292 (292)
T ss_dssp EE----SSSSSTHHHHHTSTTSSEEEEEEEEEBSTTSTTEEEEHHHHHHHHHH
T ss_pred ec----CCcccHHHHHHHcCCCCCEEEEecccccCCCcceEEEHHHHHHHhhC
Confidence 65 35566 67899999999999999999999999999999999999986
No 12
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=100.00 E-value=9.1e-49 Score=404.28 Aligned_cols=308 Identities=17% Similarity=0.083 Sum_probs=246.4
Q ss_pred ChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCceeeeeCCCCC
Q 011000 73 TPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASS 152 (496)
Q Consensus 73 T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl~VKpi~~~~ 152 (496)
.+..+.+++++.|++.|++ +.+|+.| |++|...|.. +.+.+|+.||||++||+|+.|.+
T Consensus 21 ~E~~V~~~l~~~l~~~g~e---------------v~~D~~G-nlia~~~g~~---~~~~v~l~aHmDevG~~V~~I~~-- 79 (343)
T TIGR03106 21 FTDAVVRYVAERLEDLGIE---------------YELTRRG-AIRATLPGRE---ATPARAVVTHLDTLGAMVRELKD-- 79 (343)
T ss_pred CHHHHHHHHHHHHHHcCCe---------------EEECCCe-EEEEEECCCC---CCCeEEEEEeeccccceeeEECC--
Confidence 3445667777777665553 4457788 9999876632 12369999999999999999876
Q ss_pred CCcEEEEEcCCCc----EE--EEEEEc-CC-CeEEc-C-CCCcccccccccCCCCCCCcc--ceeeeeeccCCcccCCcc
Q 011000 153 KSGRVIVRGSDGS----FL--HKLVKV-KR-PLLRV-P-TLAIHLDRTVNKDGFKPNLET--QLIPLLATKSEETSVEPK 220 (496)
Q Consensus 153 ~~G~V~~~~~~G~----~~--~~lv~~-~~-pv~vI-p-~laiHL~~~~~~~~~~~n~~~--~L~~diG~~~~~~~~~~~ 220 (496)
+|++++.+.||- +. ++.|.+ ++ ..|+| + ..+||+.++++++ +..+.+ +|++|+|+.+++
T Consensus 80 -~G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~--~~~~~~~~~l~iDiG~~s~e------ 150 (343)
T TIGR03106 80 -NGRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDS--QPTGWDHVEVRVDARASCRA------ 150 (343)
T ss_pred -CCeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHcc--CCCCCcccEEEEECCcCCHH------
Confidence 899999998752 11 234443 34 56999 7 9999998765432 456678 999999998865
Q ss_pred ccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEeeeeeecCCccccCCCCCeeeccCCCchhhHHHHHHHHHHcCCCCC
Q 011000 221 EKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPS 300 (496)
Q Consensus 221 ~~~~~~~~~~~h~~~ll~~~a~~~gV~~gDiv~~dl~~~d~~~~~~~Gl~~e~I~s~~LDNr~~~~~~leal~~~~~~~~ 300 (496)
+++++||++||+++|+..+... +++++.|+++|||+||+++++++.++.....
T Consensus 151 -------------------e~~~lGV~~Gd~v~~~~~~~~~--------~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~ 203 (343)
T TIGR03106 151 -------------------DLVRLGISVGDFVAFDPQPEFL--------ANGFIVSRHLDDKAGVAALLAALKAIVEHKV 203 (343)
T ss_pred -------------------HHHHcCCCCCCEEEECCccEEe--------cCCEEEEEecccHHhHHHHHHHHHHHHhcCC
Confidence 7789999999999999987653 4778999999999999999999988753211
Q ss_pred CCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhhccCCCCChhhHhhhcccceEEEEecCCCCCCCCCcccc
Q 011000 301 NLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHE 380 (496)
Q Consensus 301 ~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~~~~~~~~~~~l~~S~~iS~DvahA~~Pn~~~~~~ 380 (496)
..+...+++|+.||||| +| ++..+.|++. .+|++|++++ .|.
T Consensus 204 ---~~~~~v~~~~t~qEEvG-~g---aa~~i~pd~a------------------------~~i~vd~~~~-~p~------ 245 (343)
T TIGR03106 204 ---PLPVDVHPLFTITEEVG-SG---ASHALPPDVA------------------------ELVSVDNGTV-APG------ 245 (343)
T ss_pred ---CCCceEEEEEECCcccC-cc---chhcccHhhh------------------------ccEEEEeccc-CCC------
Confidence 12456889999999999 55 5666666621 3499999997 332
Q ss_pred CCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCC-hHHHHhcCCCCcEEEeccccccc
Q 011000 381 EHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSM 459 (496)
Q Consensus 381 ~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~T-ig~i~~s~~Gi~tidiGiP~l~M 459 (496)
...||+||+|+.++++ +..|+.+.++++++|+++|||||+.+. ++||| .+.++.++.||||+.||+|+|||
T Consensus 246 ---~~~lg~Gp~i~~~d~~-~~~~~~l~~~l~~~A~~~~Ip~Q~~~~----~~~gtDa~~~~~~~~Gi~t~~i~iP~Ry~ 317 (343)
T TIGR03106 246 ---QNSSEHGVTIAMADSS-GPFDYHLTRKLIRLCQDHGIPHRRDVF----RYYRSDAASAVEAGHDIRTALVTFGLDAS 317 (343)
T ss_pred ---CCcCCCCceEEEecCC-CCCCHHHHHHHHHHHHHcCCCcEEEec----CCCCChHHHHHHcCCCCCEEEeeccccch
Confidence 2679999999998875 888999999999999999999999875 44555 77899999999999999999999
Q ss_pred ccHhhhcCHHHHHHHHHHHHHHHhh
Q 011000 460 HSVREICGTEDIDIAYRHFKAFYES 484 (496)
Q Consensus 460 HS~rE~~~~~Dv~~~~~l~~af~~~ 484 (496)
|| .|+++++|++++++|+.+|+.+
T Consensus 318 Hs-~e~~~~~D~~~~~~Ll~~~~~~ 341 (343)
T TIGR03106 318 HG-YERTHIDALEALANLLVAYAQS 341 (343)
T ss_pred hh-hhhccHHHHHHHHHHHHHHhcc
Confidence 99 9999999999999999999843
No 13
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=98.76 E-value=2.1e-06 Score=91.22 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=46.9
Q ss_pred CCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhcc
Q 011000 433 CGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFS 486 (496)
Q Consensus 433 gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~ 486 (496)
.|||.+.+++. .|+|++.+|.-.-.+|++.|.+.++|++.+++++..+++.+.
T Consensus 355 ~ggtDa~~~~~-~Gip~~~~G~G~~~aHt~dE~v~i~~l~~~~~~~~~li~~~~ 407 (410)
T TIGR01882 355 RGGTDGSQLSY-MGLPTPNIFAGGENMHGRFEYISVDNMVKAVDVIVEIAKLNE 407 (410)
T ss_pred ceechHHHHHh-CCCCCCeEcCCcccCcCCceEEEHHHHHHHHHHHHHHHHHHh
Confidence 57888888864 899999999977779999999999999999999999987664
No 14
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.44 E-value=4.6e-06 Score=77.83 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=108.2
Q ss_pred CCeeeccCC-CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccc-ccccCCCcHHHHHHHHHhhccCCCC
Q 011000 271 NEFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS-YQGAGAPTMFQAIRRIVGSLAHEHV 348 (496)
Q Consensus 271 ~e~I~s~~L-DNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~g-a~gA~s~~~~d~l~ri~~~~~~~~~ 348 (496)
++.+.|++. |+..++.+.+.++..+.+.. ......+.++++..||+|+.. +. .++..
T Consensus 26 ~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~~~~i~~~~~~~EE~g~~~g~~------------~l~~~------ 84 (189)
T PF01546_consen 26 DGRLYGRGADDMKGGIAAMLAALKALKESG---DDLPGNIIFLFTPDEEIGSIGGAK------------HLLEE------ 84 (189)
T ss_dssp TTEEESTTTTTTHHHHHHHHHHHHHHHHTT---TTCSSEEEEEEESTCCGTSTTHHH------------HHHHH------
T ss_pred CCEEEcCCcCCCcccHHHHHHHHHHHHhcc---ccccccccccccccccCCCcchhh------------hhhhh------
Confidence 566777776 77888888888887764211 123557889999999999974 32 11111
Q ss_pred ChhhHhhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCC-CEeEEEe
Q 011000 349 SETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNL-PTQEFVV 427 (496)
Q Consensus 349 ~~~~~~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~I-p~Q~~~~ 427 (496)
.....+..++++..|.+... .+. ...+..+...+++++++.+. +......
T Consensus 85 ---~~~~~~~~~~~~~~e~~~~~-------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (189)
T PF01546_consen 85 ---GAFFGLHPDYVIIGEPTGKG-------------------GVG-------SDNDPPLVQALQAAAQEVGGEPPEPVAS 135 (189)
T ss_dssp ---CEEEEEEESEEEECECETTS-------------------EEE-------HCTCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ---cccccccccccccccccccc-------------------ccc-------ccccHHHHHHHHHHHHHHhhccccccce
Confidence 00111233444444432211 000 23477789999999999987 5555443
Q ss_pred ccCCCCCCChHHHHhc--CCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhh
Q 011000 428 RNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 484 (496)
Q Consensus 428 r~D~~gG~Tig~i~~s--~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~ 484 (496)
+|+|.+++++. +.|++++-+|.---.+|++.|-+...|+...++++.+++++
T Consensus 136 -----~g~tD~~~~~~~~~~~~~~i~~G~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~n 189 (189)
T PF01546_consen 136 -----GGGTDAGFLAEVKGLGIPAIGFGPGGSNAHTPDEYIDIEDLVKGAKIYAALLEN 189 (189)
T ss_dssp -----SSSSTHHHHHCHHHTTEEEEEEESCEESTTSTT-EEEHHHHHHHHHHHHHHHHT
T ss_pred -----eccccchhhhhhhccccceeeeCCCCCCCCCCCcEecHHHHHHHHHHHHHHHhC
Confidence 57777766665 68999999999889999999999999999999999999874
No 15
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=97.96 E-value=6e-05 Score=78.38 Aligned_cols=46 Identities=17% Similarity=-0.091 Sum_probs=35.7
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccccc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGA 327 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA 327 (496)
.+.||..|+.++|+++..+... .....+.+++++.||+|+.|++--
T Consensus 140 GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~fv~~~~EE~Gl~GS~~~ 185 (346)
T PRK10199 140 GMDDNAAGLGVMLELAERLKNV-----PTEYGIRFVATSGEEEGKLGAENL 185 (346)
T ss_pred CccccHHHHHHHHHHHHHHhhC-----CCCCcEEEEEECCcccCcHHHHHH
Confidence 4579999999999998877532 123468899999999999877643
No 16
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=97.41 E-value=0.00033 Score=72.69 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHh
Q 011000 404 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 483 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~ 483 (496)
|..+...+++.+++.|.+++... .+|||.+.+++. .|||++.+|++...+||+.|.++++|+...++++..+++
T Consensus 288 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~~~-~giP~v~~G~g~~~~Hs~~E~v~i~~~~~~~~~~~~~~~ 361 (361)
T TIGR01883 288 QHPLMNIFKKAAKKIGLKTSEIF-----SGGGSDANVLNE-KGVPTVNLSAGYVHAHTEKETISIEQLVKLAELVIALAE 361 (361)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEe-----cCcccHHHHHhh-CCCceEEECCCcccCcCcceeEEHHHHHHHHHHHHHHhC
Confidence 55788889999999999887532 367888777764 699999999999999999999999999999999988763
No 17
>PRK13381 peptidase T; Provisional
Probab=96.93 E-value=0.0022 Score=67.95 Aligned_cols=78 Identities=15% Similarity=0.037 Sum_probs=64.9
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
.|..+...+++.+++.|++..... .+|+|.+.++.. .|||++.+|++...+|++.|-++.+|++.+++++..++
T Consensus 326 ~~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~~GpG~~~aH~~dE~v~i~~l~~~~~v~~~~~ 399 (404)
T PRK13381 326 DDRRAVDLAFDAMKELGIEPKVIP-----MRGGTDGAALSA-KGLPTPNLFTGAHNFHSRFEFLPVSSFVKSYEVTITIC 399 (404)
T ss_pred cCHHHHHHHHHHHHHcCCCeeecc-----CCccchHHHHhc-CCCCeEEECccccCCcCcceeEEHHHHHHHHHHHHHHH
Confidence 367788888888888888766432 246777777654 69999999999999999999999999999999999998
Q ss_pred hhcc
Q 011000 483 ESFS 486 (496)
Q Consensus 483 ~~~~ 486 (496)
..+.
T Consensus 400 ~~~~ 403 (404)
T PRK13381 400 LLAA 403 (404)
T ss_pred HHhc
Confidence 7764
No 18
>PRK05469 peptidase T; Provisional
Probab=96.91 E-value=0.0022 Score=67.95 Aligned_cols=79 Identities=15% Similarity=0.024 Sum_probs=65.9
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
.|..+.+.+++.+++.|++.+... .+|||.+.+.+. .|||++.+|++...+|++.|.++.+|+..+++++..++
T Consensus 328 ~~~~lv~~~~~a~~~~g~~~~~~~-----~~ggtD~~~~~~-~giP~v~~gpG~~~~H~~~E~v~i~~l~~~~~~~~~~~ 401 (408)
T PRK05469 328 PHPHIVDLAKQAMEDLGIEPIIKP-----IRGGTDGSQLSF-MGLPCPNIFTGGHNFHGKFEFVSLESMEKAVEVIVEIA 401 (408)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEec-----CCCcccHHHHhh-CCCceEEECcCcccCcCcceeeEHHHHHHHHHHHHHHH
Confidence 467788899999998888876432 357787777654 79999999999989999999999999999999999998
Q ss_pred hhccc
Q 011000 483 ESFSS 487 (496)
Q Consensus 483 ~~~~~ 487 (496)
..|.+
T Consensus 402 ~~~~~ 406 (408)
T PRK05469 402 ELTAE 406 (408)
T ss_pred HHHhc
Confidence 77653
No 19
>PRK08554 peptidase; Reviewed
Probab=96.73 E-value=0.0036 Score=67.36 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=66.7
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
.+..+.+.+++++++.|++.+... .+|+|.+.+++. .|+|++++|+---.||++.|-+.++++..+.+++..++
T Consensus 360 ~~~~lv~~~~~~~~~~g~~~~~~~-----~~GgtDa~~~~~-~Gip~v~~Gp~~~~~H~~~E~v~i~~l~~~~~i~~~~i 433 (438)
T PRK08554 360 PDEEIVKVALRVLKELGEDAEPVE-----GPGASDSRYFTP-YGVKAIDFGPKGGNIHGPNEYVEIDSLKKMPEVYKRIA 433 (438)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEe-----cCCchHHHHHHh-cCCCceEECCCCCCCCCCcceEEHHHHHHHHHHHHHHH
Confidence 477888999999999999877654 378899988875 79999999996678999999999999999999999988
Q ss_pred hhc
Q 011000 483 ESF 485 (496)
Q Consensus 483 ~~~ 485 (496)
..|
T Consensus 434 ~~l 436 (438)
T PRK08554 434 LRL 436 (438)
T ss_pred HHH
Confidence 665
No 20
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=96.53 E-value=0.0009 Score=62.49 Aligned_cols=154 Identities=14% Similarity=0.019 Sum_probs=84.6
Q ss_pred eeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhhccCCCCChhhH
Q 011000 274 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSF 353 (496)
Q Consensus 274 I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~~~~~~~~ 353 (496)
+.-++.||-.||.++|+..+.+.... ......+.+++|+.||.|+.|++.-... .+..+
T Consensus 20 ~~~GA~DnasGva~lLelAr~l~~~~---~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~~~~----------------- 78 (179)
T PF04389_consen 20 WSPGANDNASGVAALLELARVLKELK---PQPKRTIRFVFFDGEEQGLLGSRAFVEH-DHEEL----------------- 78 (179)
T ss_dssp SSS-TTTTHHHHHHHHHHHHHHHHST---HSSSEEEEEEEESSGGGTSHHHHHHHHH-HHCHH-----------------
T ss_pred ccCCcccchHHHHHHHHHHHHHHHhh---cccCccEEEEEecccccCccchHHHHHh-hhccc-----------------
Confidence 55678999999999998877764311 1134578899999999998877643320 11111
Q ss_pred hhhcccceEEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEe-ccCCC
Q 011000 354 ECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVV-RNDMG 432 (496)
Q Consensus 354 ~~~l~~S~~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~-r~D~~ 432 (496)
-.--++|..|+....+ +.+...... .....+.+.+.++++.....++.... .....
T Consensus 79 ---~~~~~~inlD~~g~~~------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (179)
T PF04389_consen 79 ---DNIAAVINLDMIGSGD------------------PTVYSEGSP--SLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTF 135 (179)
T ss_dssp ---HHEEEEEEECSSBSSS------------------SEEEEEEGG--GHHHHHHHHHHHHHHHHHCHTSSECEEEESST
T ss_pred ---ccceeEEeccccccCc------------------ccceeeeec--cccchhhhhhhhhhhhhhcccccccccccCCC
Confidence 1113678888654322 122111111 00112455566665543222222221 11234
Q ss_pred CCCChHHHHhcCCCCcEEEecccc---cccccHhhhcCHHHHHH
Q 011000 433 CGSTIGPILASGVGIRTVDCGIAQ---LSMHSVREICGTEDIDI 473 (496)
Q Consensus 433 gG~Tig~i~~s~~Gi~tidiGiP~---l~MHS~rE~~~~~Dv~~ 473 (496)
+++.-.++. +.|||++.+.-=- .+-|++.-+.+.-|.+.
T Consensus 136 ~~sD~~~F~--~~gip~~~~~~~~~~~~~~Ht~~Dt~~~~~~~~ 177 (179)
T PF04389_consen 136 GGSDHYPFS--KAGIPAVTLSSTDGYNPYYHTPEDTPDNLDPDT 177 (179)
T ss_dssp TSSTCHHHH--TTT-EEEEEEESSSSGTTTTSTT-SGGGC-HHH
T ss_pred CCCCcHhhh--cCCEeEEEEEecCCCCCCCCCcccChhhcCCcc
Confidence 455566777 6899998776433 66799888877766554
No 21
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=96.24 E-value=0.011 Score=63.04 Aligned_cols=78 Identities=12% Similarity=-0.070 Sum_probs=63.5
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccc--ccHhhhcCHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSM--HSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~M--HS~rE~~~~~Dv~~~~~l~~a 480 (496)
.|..+.+.+++.+++.|++.+... .+|||.+.+.+ .|+|++.+..|...+ |++.|.++.+|+...++++..
T Consensus 331 ~d~~lv~~l~~a~~~~G~~~~~~~-----~~ggtDa~~~~--~giPt~~~~gp~~~~~aH~~dE~v~i~~l~~~~~il~~ 403 (414)
T PRK12891 331 FAPGCIDAVRDAARALGLSHMDIV-----SGAGHDACFAA--RGAPTGMIFVPCVDGLSHNEAEAITPEWFAAGADVLLR 403 (414)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----CcchHHHHHHH--hhCCEEEEEEcCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 467788999999998999877532 35677766543 499998877787764 999999999999999999999
Q ss_pred HHhhccc
Q 011000 481 FYESFSS 487 (496)
Q Consensus 481 f~~~~~~ 487 (496)
++..|.+
T Consensus 404 ~l~~~~~ 410 (414)
T PRK12891 404 AVLQSAQ 410 (414)
T ss_pred HHHHHhh
Confidence 9988865
No 22
>PRK07338 hypothetical protein; Provisional
Probab=96.21 E-value=0.0092 Score=62.99 Aligned_cols=78 Identities=15% Similarity=0.055 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEE-ecccccccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD-CGIAQLSMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tid-iGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
+..+...+++.+++.|++..... .+|+|.+.+++. .|||+++ +|.---.+|++.|-++++|+...++++..++
T Consensus 321 ~~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~~~Gpg~~~~H~~~E~v~i~~l~~~~~~~~~~l 394 (402)
T PRK07338 321 QQRLFEAVQACGAALGLTIDWKD-----SGGVCDGNNLAA-AGLPVVDTLGVRGGNIHSEDEFVILDSLVERAQLSALIL 394 (402)
T ss_pred hHHHHHHHHHHHHHcCCCccccc-----CCccchHHHHhh-cCCCeEeccCCCCCCCCCccceEehhhHHHHHHHHHHHH
Confidence 44688889999999998876432 367788777765 7999995 8886667899999999999999999999999
Q ss_pred hhccc
Q 011000 483 ESFSS 487 (496)
Q Consensus 483 ~~~~~ 487 (496)
..|.+
T Consensus 395 ~~~~~ 399 (402)
T PRK07338 395 MRLAQ 399 (402)
T ss_pred HHHhc
Confidence 88754
No 23
>PRK07473 carboxypeptidase; Provisional
Probab=96.15 E-value=0.0076 Score=63.44 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEE-ecccccccccHhhhcCHHHHHHHHHHHHHHHh
Q 011000 405 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD-CGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 483 (496)
Q Consensus 405 ~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tid-iGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~ 483 (496)
..+.+.++++++..|++..... .+|+|.+.+++. .|||+++ +|+---.+|++-|-++.+|+..+++++..++.
T Consensus 300 ~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~g~Gpg~~~~H~~dE~v~i~~l~~~~~vl~~~l~ 373 (376)
T PRK07473 300 MALYEKARAIAGQLGLSLPHGS-----AGGGSDGNFTGA-MGIPTLDGLGVRGADYHTLNEHIEVDSLAERGRLMAGLLA 373 (376)
T ss_pred HHHHHHHHHHHHHcCCCCcccc-----CccccHhhhHHh-cCCCEEEeccCCCCCCCCCCceEecccHHHHHHHHHHHHH
Confidence 3577888899999999877543 367788888775 6999998 98876779999999999999999999999986
Q ss_pred hc
Q 011000 484 SF 485 (496)
Q Consensus 484 ~~ 485 (496)
.+
T Consensus 374 ~~ 375 (376)
T PRK07473 374 TL 375 (376)
T ss_pred hc
Confidence 54
No 24
>PRK08652 acetylornithine deacetylase; Provisional
Probab=95.95 E-value=0.012 Score=60.49 Aligned_cols=77 Identities=19% Similarity=0.069 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-cccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~-l~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
|..+.+.+++.+++.|.+..... .+|+|.+..++. .|+|++.+|.-. -.+|++.|-+..+|+..+++++..++
T Consensus 268 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~gip~v~~Gpg~~~~~H~~nE~i~i~~l~~~~~~l~~~~ 341 (347)
T PRK08652 268 DEEIVQLLEKAMKEVGLEPEFTV-----MRSWTDAINFRY-NGTKTVVWGPGELDLCHTKFERIDVREVEKAKEFLKALN 341 (347)
T ss_pred CCHHHHHHHHHHHHhCCCCCcCc-----CCccchhHHHHH-CCCCEEEECCCchhhcCCCCceeeHHHHHHHHHHHHHHH
Confidence 66788899999998898765433 256787776654 799999999654 35899999999999999999999998
Q ss_pred hhcc
Q 011000 483 ESFS 486 (496)
Q Consensus 483 ~~~~ 486 (496)
+.+-
T Consensus 342 ~~~~ 345 (347)
T PRK08652 342 EILL 345 (347)
T ss_pred HHHh
Confidence 7664
No 25
>PRK06837 acetylornithine deacetylase; Provisional
Probab=95.89 E-value=0.018 Score=61.57 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
|..+...+++.+++ .|.+...... +|+|.+.++....|+|++.+|..-..+|++.|-++++|+..+++++..++
T Consensus 344 ~~~~~~~~~~a~~~~~g~~~~~~~~-----~g~tDa~~~~~~~gip~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~~~l 418 (427)
T PRK06837 344 GSEAEAALARAHAAVFGGPLRSFVT-----TAYTDTRFYGLYYGIPALCYGPSGEGIHGFDERVDLESVRKVTKTIALFV 418 (427)
T ss_pred CCHHHHHHHHHHHHHhCCCCeeeEE-----eeccchHHHhccCCCCEEEECCCCCccCCCCceEEHHHHHHHHHHHHHHH
Confidence 34666777777666 7888776542 57787777664479999999998888999999999999999999999999
Q ss_pred hhcccc
Q 011000 483 ESFSSI 488 (496)
Q Consensus 483 ~~~~~~ 488 (496)
..+-.+
T Consensus 419 ~~~~~~ 424 (427)
T PRK06837 419 AEWCGV 424 (427)
T ss_pred HHHhCC
Confidence 877654
No 26
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=95.88 E-value=0.019 Score=59.84 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
|....+.+++.+++ .|.+.+... .+|+|.+.++.. .|+|++.+|..-..+|++.|-+..+|+..+++++..++
T Consensus 294 ~~~~~~~~~~a~~~~~g~~~~~~~-----~~g~~d~~~~~~-~g~p~~~~Gp~~~~~H~~~E~i~i~~l~~~~~~~~~~l 367 (370)
T TIGR01246 294 DGKLIDKAREAIEETNGIKPELST-----GGGTSDGRFIAL-MGAEVVEFGPVNATIHKVNECVSIEDLEKLSDVYQDLL 367 (370)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec-----CCCCchHHHHHH-cCCCEEEecCCcccCCCCCceeEHHHHHHHHHHHHHHH
Confidence 45566777776665 687765533 367888877764 79999999999888999999999999999999999988
Q ss_pred hhc
Q 011000 483 ESF 485 (496)
Q Consensus 483 ~~~ 485 (496)
.+|
T Consensus 368 ~~~ 370 (370)
T TIGR01246 368 ENL 370 (370)
T ss_pred HhC
Confidence 654
No 27
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=95.83 E-value=0.018 Score=59.31 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=64.0
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
.+..+...+++.+++.+.+..... .+|+|.+.+++...|+|++.+|.-.. .+|++.|-+..+|++.+++++..+
T Consensus 255 ~~~~lv~~~~~a~~~~~~~~~~~~-----~~g~tD~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~ 329 (336)
T TIGR01902 255 RNNPLVRAFVRAIRKQGMKPRLKK-----KTGTSDMNILAPIWTVPMVAYGPGDSTLDHTPQEKISLAEYLIGIKTLMLA 329 (336)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEee-----ccccCccceeccccCCCeEEECCCCcccCCCCcceeEHHHHHHHHHHHHHH
Confidence 456778888999988887655433 24678887776656999999997754 479999999999999999999999
Q ss_pred Hhhccc
Q 011000 482 YESFSS 487 (496)
Q Consensus 482 ~~~~~~ 487 (496)
+..+.+
T Consensus 330 l~~l~~ 335 (336)
T TIGR01902 330 IEELWQ 335 (336)
T ss_pred HHHHhc
Confidence 987643
No 28
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=95.55 E-value=0.035 Score=58.62 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc---cccccHhhhcCHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ---LSMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~---l~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
+..+...+++++++.+.+.+... .+|+|.+.++.. .|||++-+|.-- ...|++.|-++.+|+..+++++..
T Consensus 319 ~~~lv~~l~~a~~~~~~~~~~~~-----~~g~tDa~~~~~-~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~~~~~~~ 392 (400)
T TIGR01880 319 SNPWWVAFKDAVKEMGCTFKPEI-----LPGSTDSRYIRA-AGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIYQT 392 (400)
T ss_pred CCHHHHHHHHHHHHcCCeeccee-----ecCcchHHHHHh-CCCCeEEECCccCCcccccCCCCceEHHHHHHHHHHHHH
Confidence 44666888899998876655432 357788888864 899999877632 248999999999999999999999
Q ss_pred HHhhccc
Q 011000 481 FYESFSS 487 (496)
Q Consensus 481 f~~~~~~ 487 (496)
++..+..
T Consensus 393 ~l~~~~~ 399 (400)
T TIGR01880 393 LISALAS 399 (400)
T ss_pred HHHHhhc
Confidence 9988754
No 29
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=95.36 E-value=0.045 Score=57.38 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=61.4
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 403 t~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
.|..+.+.+++.+++ .|.+.+.... +|+|.+.++.. .|||++.+|..--.+|++.|-+..+|++.+++++..+
T Consensus 323 ~~~~~v~~l~~a~~~~~g~~~~~~~~-----~g~td~~~~~~-~gip~v~~Gp~~~~~H~~nE~v~i~~l~~~~~~~~~~ 396 (400)
T PRK13983 323 PDSEIVKKLKRAIKEVRGIEPKVGGI-----GGGTVAAFLRK-KGYPAVVWSTLDETAHQPNEYAKISNLIEDAKVFALL 396 (400)
T ss_pred CCcHHHHHHHHHHHHhcCCCceeeee-----cCcHHHHHHHH-cCCCEEEeCCccccCCCCCceeeHHHHHHHHHHHHHH
Confidence 466677778777776 6887776442 57788877764 7999999999888899999999999999999999988
Q ss_pred Hh
Q 011000 482 YE 483 (496)
Q Consensus 482 ~~ 483 (496)
+.
T Consensus 397 ~~ 398 (400)
T PRK13983 397 LL 398 (400)
T ss_pred Hh
Confidence 64
No 30
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=95.28 E-value=0.048 Score=57.95 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=61.0
Q ss_pred ccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccc--cccHhhhcCHHHHHHHHHHHH
Q 011000 402 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS--MHSVREICGTEDIDIAYRHFK 479 (496)
Q Consensus 402 ~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~--MHS~rE~~~~~Dv~~~~~l~~ 479 (496)
..|+.+...+.+.+++.|++.+... .+|+|.+.++.. .| |++.+..|... +|++.|.++.+|+..+++++.
T Consensus 332 ~~~~~l~~~l~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~g-p~~~~~gp~~~~~aHs~dE~v~i~~l~~~~~i~~ 404 (414)
T PRK12890 332 PCDPALVDAVEAAAARLGYPSRRMP-----SGAGHDAAAIAR-IG-PSAMIFVPCRGGISHNPEEAMDPEDLAAGARVLL 404 (414)
T ss_pred CCCHHHHHHHHHHHHHcCCCceecC-----CcccHHHHHHHh-hC-CEEEEEecCCCCCCCCcCccCCHHHHHHHHHHHH
Confidence 3477888999999998898876432 357787777764 56 55555555443 899999999999999999999
Q ss_pred HHHhhccc
Q 011000 480 AFYESFSS 487 (496)
Q Consensus 480 af~~~~~~ 487 (496)
.++..|.+
T Consensus 405 ~ll~~l~~ 412 (414)
T PRK12890 405 DAVLRLDR 412 (414)
T ss_pred HHHHHHhh
Confidence 99987743
No 31
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=95.27 E-value=0.045 Score=58.18 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=61.0
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccc--cccHhhhcCHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS--MHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~--MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
.|..+.+.+++.+++.|.+.+... .+|+|.+.+.+ .|+|++.++.|... +|++.|.++.+++..+++++..
T Consensus 332 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~--~~iP~~~~~gp~~~~~~H~~dE~v~i~~l~~~~~v~~~ 404 (413)
T PRK09290 332 FDPGLVAALEEAAERLGLSYRRLP-----SGAGHDAQILA--AVVPTAMIFVPSVGGISHNPAEFTSPEDCAAGANVLLH 404 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccchHHHHHh--ccCCEEEEEeccCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 467788889999988887754322 35778776664 47999887778654 8999999999999999999999
Q ss_pred HHhhcc
Q 011000 481 FYESFS 486 (496)
Q Consensus 481 f~~~~~ 486 (496)
++..|.
T Consensus 405 ~l~~l~ 410 (413)
T PRK09290 405 ALLELA 410 (413)
T ss_pred HHHHHh
Confidence 987764
No 32
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=95.14 E-value=0.049 Score=56.51 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
+..+.+.+++..++.+.+.-... .+|+|.+.++....|+|++-+|+... .+|++.|-+..+|+..+++++..++
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~-----~~g~tD~~~~~~~~gip~v~~Gpg~~~~~H~~dE~i~i~~l~~~~~~~~~~~ 345 (348)
T PRK04443 271 RTPLARAFRVAIREAGGTPRLKR-----KTGTSDMNVVAPAWGCPMVAYGPGDSDLDHTPDEHLPLAEYLRAIAVLTDVL 345 (348)
T ss_pred CCHHHHHHHHHHHHhcCCcceec-----cccCCcHHHHhhhcCCCEEEECCCCccccCCCcccccHHHHHHHHHHHHHHH
Confidence 44567778888887654322111 35777766665447999999998754 4799999999999999999999998
Q ss_pred hhc
Q 011000 483 ESF 485 (496)
Q Consensus 483 ~~~ 485 (496)
.++
T Consensus 346 ~~l 348 (348)
T PRK04443 346 ERL 348 (348)
T ss_pred hhC
Confidence 654
No 33
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.80 E-value=0.064 Score=56.32 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-cccccHhhhcCHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~-l~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+..+.+.+++.+++ .|++..... .+|+|.+.++. +.|||++.+|.-. .-+|++.|-++.+++..+++++..+
T Consensus 313 ~~~l~~~~~~a~~~~~g~~~~~~~-----~~g~tD~~~~~-~~gip~v~~Gpg~~~~~H~~~E~i~~~~l~~~~~i~~~~ 386 (394)
T PRK08651 313 DSELVKALREAIREVLGVEPKKTI-----SLGGTDARFFG-AKGIPTVVYGPGELELAHAPDEYVEVKDVEKAAKVYEEV 386 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----ecCcccHHHHh-hCCCcEEEECCCChHhcCCCCceeEHHHHHHHHHHHHHH
Confidence 34577888888877 687655433 25778777766 4799999988865 3699999999999999999999999
Q ss_pred Hhhcc
Q 011000 482 YESFS 486 (496)
Q Consensus 482 ~~~~~ 486 (496)
+.++.
T Consensus 387 i~~l~ 391 (394)
T PRK08651 387 LKRLA 391 (394)
T ss_pred HHHhh
Confidence 88764
No 34
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.80 E-value=0.076 Score=55.30 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHh
Q 011000 405 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 483 (496)
Q Consensus 405 ~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~ 483 (496)
..+.+.+++.+++ .|.+.+... .+|+|.+.++.. .|+|++.+|.--...|++.|-++.+|+..+++++..++.
T Consensus 298 ~~~~~~l~~a~~~~~g~~~~~~~-----~~g~tda~~~~~-~g~p~v~~Gp~~~~~H~~~E~i~~~~l~~~~~~~~~~~~ 371 (375)
T PRK13009 298 GKLVDAVVAAIEAVTGITPELST-----SGGTSDARFIAD-YGAQVVEFGPVNATIHKVNECVSVADLEKLTRIYERILE 371 (375)
T ss_pred cHHHHHHHHHHHHHhCCCceeec-----cCCCccHHHHHH-cCCCeEEeccCcccCCCCCCcEEHHHHHHHHHHHHHHHH
Confidence 4556667766665 687766543 367788877765 799999999876679999999999999999999999987
Q ss_pred hc
Q 011000 484 SF 485 (496)
Q Consensus 484 ~~ 485 (496)
.|
T Consensus 372 ~~ 373 (375)
T PRK13009 372 RL 373 (375)
T ss_pred HH
Confidence 65
No 35
>PRK06915 acetylornithine deacetylase; Validated
Probab=94.80 E-value=0.066 Score=56.96 Aligned_cols=81 Identities=11% Similarity=-0.014 Sum_probs=62.9
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-cccccHhhhcCHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 403 t~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~-l~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
.|..+...+++++++ .|.+..... .+|||.+.++....|+|++.+|+.. -..|++.|-++.+|+..+++++.+
T Consensus 338 ~d~~lv~~l~~a~~~~~G~~~~~~~-----~~g~tD~~~~~~~~giP~v~fGpg~~~~aH~~dE~v~~~~l~~~~~~~~~ 412 (422)
T PRK06915 338 ENHPLMTTLEHNFVEIEGNKPIIEA-----SPWGTDGGLLTQIAGVPTIVFGPGETKVAHYPNEYIEVDKMIAAAKIIAL 412 (422)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeece-----eeeeccHHHHhccCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHH
Confidence 356777888888887 476655422 2567777777653499999999864 358999999999999999999999
Q ss_pred HHhhcccc
Q 011000 481 FYESFSSI 488 (496)
Q Consensus 481 f~~~~~~~ 488 (496)
++.++-.+
T Consensus 413 ll~~~~~~ 420 (422)
T PRK06915 413 TLLDWCEV 420 (422)
T ss_pred HHHHHhCC
Confidence 99877654
No 36
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=94.74 E-value=0.13 Score=55.13 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=69.2
Q ss_pred CCcEEEE---cCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhc-CCCCcEEEecccccccccHhh
Q 011000 389 KGLVIKH---NANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILAS-GVGIRTVDCGIAQLSMHSVRE 464 (496)
Q Consensus 389 ~GpvIk~---~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s-~~Gi~tidiGiP~l~MHS~rE 464 (496)
.++-+.. +....+-.+..+....++..++.+++-..... .|||.|..++. ...++.+.+|. ...+||+.|
T Consensus 317 ~~~~~~~~~~Yp~~~~~~~~~iv~~a~~a~~~l~~~p~v~~i-----~gGtd~~~is~~g~p~~~i~~Gp-~~n~Hs~~E 390 (414)
T COG2195 317 AGAELEVKDSYPGWKIKPDSPLVDLAKKAYKELGIKPKVKPI-----HGGTDGGVLSFKGLPTPNISTGP-GENPHSPDE 390 (414)
T ss_pred cceEEEEeccccCcCCCCCchHHHHHHHHHHHhCCCceEEEe-----ecccchhhhhccCCCCceEeccc-ccCCCCccc
Confidence 5555554 22334566788899999999999999665554 36665555544 45566666666 999999999
Q ss_pred hcCHHHHHHHHHHHHHHHhhcc
Q 011000 465 ICGTEDIDIAYRHFKAFYESFS 486 (496)
Q Consensus 465 ~~~~~Dv~~~~~l~~af~~~~~ 486 (496)
-+++..++.+++++...++.+.
T Consensus 391 ~v~I~s~ek~~~~l~~l~~~~~ 412 (414)
T COG2195 391 FVSIESMEKAVQVLVELLKLAA 412 (414)
T ss_pred eeehHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988764
No 37
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=94.50 E-value=0.1 Score=54.09 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccc-cccHhhhcCHHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~-MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
+..+...+.+.+++.|.+..... .+|+|.+.+++. .|.+++.+|.-... +|++.|-+..+|+..++++|..++
T Consensus 266 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~~~-~~~~~v~fGpg~~~~aH~~nE~i~i~~l~~~~~~~~~~i 339 (346)
T PRK00466 266 NNPVVKALMRALLKQNIKPRLVR-----KAGTSDMNILQK-ITTSIATYGPGNSMLEHTNQEKITLDEIYIAVKTYMLAI 339 (346)
T ss_pred CCHHHHHHHHHHHHhCCCceEEe-----cCCcCcHHHHHH-hCCCEEEECCCCcccccCCCceeeHHHHHHHHHHHHHHH
Confidence 35666777777777788766543 367777776664 67899999975544 899999999999999999999998
Q ss_pred hhcc
Q 011000 483 ESFS 486 (496)
Q Consensus 483 ~~~~ 486 (496)
..|.
T Consensus 340 ~~l~ 343 (346)
T PRK00466 340 EELW 343 (346)
T ss_pred HHHH
Confidence 7663
No 38
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=94.27 E-value=0.11 Score=56.48 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=61.2
Q ss_pred ccCHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcC-CCCcEEEecccccccccHhhhcCHHHHHHHHHHHH
Q 011000 402 ATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASG-VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFK 479 (496)
Q Consensus 402 ~t~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~-~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~ 479 (496)
..|..+...+++.+++ .|.+...... +|||.+.+.+.. -|+|++.+|.+.-.+|++.|-+.++|+...++++.
T Consensus 396 ~~d~plv~~l~~a~~~~~g~~~~~~~~-----~Ggtd~~~~~~~~~~i~~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~ 470 (477)
T TIGR01893 396 DPQSNLLDTARKVYSEMFGEDPEVKVI-----HAGLECGIISSKIPDIDMISIGPNIYDPHSPNERVSISSVEKVWDFLV 470 (477)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCeEEEe-----ecCccHHHHHhhCCCceEEEeCCCCCCCCCCCceeeHHHHHHHHHHHH
Confidence 3456677777777775 4777765442 455656555543 38999999999999999999999999999999999
Q ss_pred HHHhhc
Q 011000 480 AFYESF 485 (496)
Q Consensus 480 af~~~~ 485 (496)
.+++.+
T Consensus 471 ~ll~~~ 476 (477)
T TIGR01893 471 KVLERL 476 (477)
T ss_pred HHHHhc
Confidence 998765
No 39
>PRK13004 peptidase; Reviewed
Probab=94.19 E-value=0.054 Score=57.24 Aligned_cols=78 Identities=21% Similarity=0.021 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHC-CCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKLH-NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~-~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+..+...+++.+++. |.+..... ..++|.|.......|+|++.+|+-.. .+|++.|-+.++|+..+++++..+
T Consensus 317 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~~~td~~~~~~~~Gip~v~~Gpg~~~~aH~~nE~i~i~~l~~~~~~~~~~ 391 (399)
T PRK13004 317 DHEFVKAAVEAYKGLFGKAPEVDK-----WTFSTNGVSIAGRAGIPTIGFGPGKEPLAHAPNEYTWKEQLVKAAAMYAAI 391 (399)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecc-----cccccCCeEEehhcCCCEEEECCCcccccCCCCceeEHHHHHHHHHHHHHH
Confidence 456667777777765 76544321 23445444444458999999997554 499999999999999999999999
Q ss_pred Hhhcc
Q 011000 482 YESFS 486 (496)
Q Consensus 482 ~~~~~ 486 (496)
+..|-
T Consensus 392 ~~~~~ 396 (399)
T PRK13004 392 PKSLL 396 (399)
T ss_pred HHHHh
Confidence 98764
No 40
>PRK08596 acetylornithine deacetylase; Validated
Probab=94.16 E-value=0.12 Score=55.06 Aligned_cols=80 Identities=18% Similarity=0.073 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-cccccHhhhcCHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~-l~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+..+...+++.+++ .|.+..... .+|+|.+.++.. .|||++.+|.-- -.+|++.|-+.++|++.+++++.++
T Consensus 338 ~~~~v~~l~~a~~~~~g~~~~~~~-----~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~i~~~~~~~~~~~~~ 411 (421)
T PRK08596 338 EHPAVKTLSSAHESVLSKNAILDM-----STTVTDGGWFAE-FGIPAVIYGPGTLEEAHSVNEKVEIEQLIEYTKVITAF 411 (421)
T ss_pred CchHHHHHHHHHHHHhCCCCeeeE-----Eeeecchhhhhh-cCCCEEEECCCcccccCCCCceEEHHHHHHHHHHHHHH
Confidence 33444445554544 577754432 357777777765 899999999864 4589999999999999999999999
Q ss_pred Hhhccccc
Q 011000 482 YESFSSID 489 (496)
Q Consensus 482 ~~~~~~~~ 489 (496)
+.+|-...
T Consensus 412 l~~~~~~~ 419 (421)
T PRK08596 412 IYEWCHTK 419 (421)
T ss_pred HHHHhCCC
Confidence 98876543
No 41
>PRK08737 acetylornithine deacetylase; Provisional
Probab=93.87 E-value=0.12 Score=54.19 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-cccccHhhhcCHHHHHHHHHHHHHHHh
Q 011000 405 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFYE 483 (496)
Q Consensus 405 ~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~-l~MHS~rE~~~~~Dv~~~~~l~~af~~ 483 (496)
....+.+++++++.++|.-.. .+|+|.+.++.. .|||||..|.-- ..+|++.|-+.++++..++++|..++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~------~~~~tDa~~~~~-~Gip~v~~GpG~~~~aHt~dE~i~i~~l~~~~~~~~~~~~ 362 (364)
T PRK08737 290 EERRLAARDVADALDLPIGNA------VDFWTEASLFSA-AGYTALVYGPGDIAQAHTADEFVTLDQLQRYAESVHRIIN 362 (364)
T ss_pred hHHHHHHHHHHhhhcCCCCce------eccccCHHHHHH-cCCCEEEECCCChhhccCCCcceeHHHHHHHHHHHHHHhc
Confidence 344455677777778775321 256788887764 799999999884 468999999999999999999998875
No 42
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=93.84 E-value=0.13 Score=56.28 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=61.8
Q ss_pred cccCHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCC-hHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHH
Q 011000 401 YATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 478 (496)
Q Consensus 401 y~t~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~T-ig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~ 478 (496)
+..|..+...+.++.++ .|-+-+.... .||+ .|-+....-|||+|.+|.-...||||.|-+++++++.+++++
T Consensus 401 ~~~ds~lv~~l~~~y~e~~G~~~~~~~i-----haglEcG~~~~~~p~i~~VsfGP~~~~~HspdE~v~I~s~~~~~~~l 475 (485)
T PRK15026 401 PDANSPVMHLVRETYQRLFNKTPNIQII-----HAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLL 475 (485)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCeEEEE-----EEEehHHHHHhhCCCCCEEEECCCCCCCCCCCcEEEhHHHHHHHHHH
Confidence 34456667777777666 3555554432 3555 565554457999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 011000 479 KAFYESFS 486 (496)
Q Consensus 479 ~af~~~~~ 486 (496)
..|++++.
T Consensus 476 ~~~l~~~~ 483 (485)
T PRK15026 476 TELLKEIP 483 (485)
T ss_pred HHHHHhhh
Confidence 99999873
No 43
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=93.80 E-value=0.15 Score=53.36 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhc-CCCCcEEEeccc-ccccccHhhhcCHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILAS-GVGIRTVDCGIA-QLSMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s-~~Gi~tidiGiP-~l~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
+..+.+.+++.+++ .|.++.... .+|+|.+..+.. ..|+|++.+|.- .-.+|++.|-++.+|+..+++++..
T Consensus 296 ~~~l~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~~~~~ip~i~~Gpg~~~~~H~~~E~i~~~~l~~~~~~~~~ 370 (377)
T PRK08588 296 DSKLVQLAKDVAKSYVGQDIPLSA-----IPGATDASSFLKKKPDFPVIIFGPGNNLTAHQVDEYVEKDMYLKFIDIYKE 370 (377)
T ss_pred CCHHHHHHHHHHHHhhCCCCceec-----CCCcccHHHHhhhcCCCCEEEECCCCCccCCCCCceeEHHHHHHHHHHHHH
Confidence 44677888888877 677655432 356676655543 368999999976 5679999999999999999999999
Q ss_pred HHhhc
Q 011000 481 FYESF 485 (496)
Q Consensus 481 f~~~~ 485 (496)
++..+
T Consensus 371 ~~~~~ 375 (377)
T PRK08588 371 IIIQY 375 (377)
T ss_pred HHHHH
Confidence 98765
No 44
>PRK09133 hypothetical protein; Provisional
Probab=93.64 E-value=0.13 Score=55.62 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHC--CCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEec---c-c-ccccccHhhhcCHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKLH--NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCG---I-A-QLSMHSVREICGTEDIDIAYR 476 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~--~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiG---i-P-~l~MHS~rE~~~~~Dv~~~~~ 476 (496)
+..+.+.+++++++. ++|+.... .+|+|.+.++.. .|+|++.++ . + .-.+|++.|-++.+|+..+++
T Consensus 386 ~~~l~~~l~~~~~~~~~g~~~~~~~-----~~ggtDa~~~~~-~gip~~~~~~i~gp~~~~~aH~~dE~v~i~~l~~~~~ 459 (472)
T PRK09133 386 RPDIMKAVEKLTAAMWPGVPVIPSM-----STGATDGRYLRA-AGIPTYGVSGLFGDPDDTFAHGLNERIPVASFYEGRD 459 (472)
T ss_pred CcHHHHHHHHHHHHHCCCCceeccc-----cccccchHHHHh-cCCCceeecCcccCcccccCCCCCCceeHHHHHHHHH
Confidence 556778888888775 77765433 357788887764 799998632 1 2 345899999999999999999
Q ss_pred HHHHHHhhccc
Q 011000 477 HFKAFYESFSS 487 (496)
Q Consensus 477 l~~af~~~~~~ 487 (496)
++..|+..+.+
T Consensus 460 ~l~~~l~~l~~ 470 (472)
T PRK09133 460 FLYELVKDLAG 470 (472)
T ss_pred HHHHHHHHhhc
Confidence 99999987643
No 45
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=93.28 E-value=0.19 Score=53.30 Aligned_cols=77 Identities=13% Similarity=-0.016 Sum_probs=57.1
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-cccccHhhhcCHHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~-l~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
.|+.+.+.+++.+++.+.+.+... .+|+|.+.+++. .+.+++..|... -.+|++.|.++.+|+..+++++..+
T Consensus 331 ~d~~l~~~l~~~~~~~g~~~~~~~-----~~g~tD~~~~~~-~~p~~v~~gp~~~~~~Hs~dE~v~i~~l~~~~~i~~~l 404 (412)
T PRK12893 331 FDPALVALVEAAAEALGLSHMRMV-----SGAGHDAMFLAR-VAPAAMIFVPCRGGISHNEAEDTEPADLAAGANVLLHA 404 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccHHHHHHHHh-hCCEEEEEeecCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 467788899999988888765322 357787777664 343345555332 2379999999999999999999999
Q ss_pred Hhhc
Q 011000 482 YESF 485 (496)
Q Consensus 482 ~~~~ 485 (496)
+..|
T Consensus 405 l~~~ 408 (412)
T PRK12893 405 VLEL 408 (412)
T ss_pred HHHh
Confidence 8766
No 46
>PRK07318 dipeptidase PepV; Reviewed
Probab=93.20 E-value=0.1 Score=56.51 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+..+...+++.+++ .|.+.+... .+|+|.+.++. .||+.+-++++.. .+|++.|-++++|+..++++|..+
T Consensus 388 d~~lv~~l~~a~~~~~g~~~~~~~-----~~ggtDa~~~~--~~i~~Gp~~pg~~~~aH~~dE~v~i~~l~~~~~v~~~~ 460 (466)
T PRK07318 388 DDPLVKTLLKVYEKQTGLKGEEQV-----IGGGTYARLLK--RGVAFGAMFPGSEDTMHQANEYIEIDDLIKAAAIYAEA 460 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeE-----EcchHhHhhCC--CeEEeCCCCCCCCCCCcCCCcceeHHHHHHHHHHHHHH
Confidence 56777888888886 788877543 26778887765 3777665555533 399999999999999999999999
Q ss_pred Hhhc
Q 011000 482 YESF 485 (496)
Q Consensus 482 ~~~~ 485 (496)
+..+
T Consensus 461 l~~~ 464 (466)
T PRK07318 461 IYEL 464 (466)
T ss_pred HHHH
Confidence 8776
No 47
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=93.20 E-value=0.13 Score=54.72 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=62.4
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc--ccccHhhhcCHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL--SMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l--~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
.|..+...+++.|++.+.++... ..+|||.+.+++. .+|++.+-.|.. .+|++.|-++.+|+...++++..
T Consensus 325 ~d~~lv~~l~~a~~~~~~~~~~~-----~sggg~Da~~~~~--~vP~~~ifgp~~~g~~H~p~E~v~~e~l~~g~~vl~~ 397 (406)
T TIGR03176 325 MNKEIVAIIEQLAKAEKLNYRLM-----HSGAGHDAQIFAP--RVPTAMIFVPSIGGISHNPAERTNIEDLVEGVKTLAD 397 (406)
T ss_pred CCHHHHHHHHHHHHHcCCCceec-----CcccHHHHHHHHH--HCCEEEEEEeCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 36788899999999988775532 2467888777775 389988777763 47999999999999999999999
Q ss_pred HHhhccc
Q 011000 481 FYESFSS 487 (496)
Q Consensus 481 f~~~~~~ 487 (496)
++..+..
T Consensus 398 ~l~~l~~ 404 (406)
T TIGR03176 398 MLYELAY 404 (406)
T ss_pred HHHHHhc
Confidence 9887643
No 48
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=93.00 E-value=0.24 Score=52.82 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCC
Q 011000 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (496)
Q Consensus 74 ~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dsp 141 (496)
...+.+++++.+++.|++ +++|..| ||+|...|..+ +.+.+++++|+|++
T Consensus 32 ~~~a~~~~~~~~~~~Gl~---------------v~~D~~g-N~~~~~~g~~~--~~~~i~~gsHlDtv 81 (406)
T TIGR03176 32 WLAAQQQFKKRMAESGLE---------------TRFDDVG-NLYGRLVGTEF--PEETILTGSHIDTV 81 (406)
T ss_pred HHHHHHHHHHHHHHcCCE---------------EEEcCCC-cEEEEecCCCC--CCCeEEEeccccCC
Confidence 456788889999999886 3445557 99998888653 24579999999987
No 49
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=92.63 E-value=0.24 Score=52.46 Aligned_cols=76 Identities=11% Similarity=0.010 Sum_probs=58.2
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--cccccHhhhcCHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~--l~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
.|..+.+.+++.+++.|.+..... .+|+|.+.+++. . +|++.+..|. -.+|++.|-++.+|+...++++..
T Consensus 332 ~d~~lv~~~~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~-ip~~~~~gp~~~~~~H~~~E~v~i~~l~~~~~il~~ 404 (412)
T PRK12892 332 CDAALVDALRAAAEAAGGPYLEMP-----SGAGHDAQNMAR-I-APSAMLFVPSKGGISHNPAEDTSPADLAQGARVLAD 404 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----cchHHHHHHHHh-H-CCEEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 467788899999998887754322 357787777665 3 8876555553 237999999999999999999999
Q ss_pred HHhhc
Q 011000 481 FYESF 485 (496)
Q Consensus 481 f~~~~ 485 (496)
++..|
T Consensus 405 ~l~~~ 409 (412)
T PRK12892 405 TLRRL 409 (412)
T ss_pred HHHHh
Confidence 98765
No 50
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=92.34 E-value=0.18 Score=53.26 Aligned_cols=78 Identities=18% Similarity=0.025 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccc-cccHhhhcCHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~-MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+..+...+.+++++ .+-+-.... .+++|.+.....+.|+|++.+|+-... +|++.|-+..+|+..+++++..|
T Consensus 315 ~~~~v~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~ 389 (395)
T TIGR03320 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVRAAAMYAAI 389 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----cceecccceehhhcCCCEEEECCCchhhccCCCcEEEHHHHHHHHHHHHHH
Confidence 44555666666665 355543322 244554433334589999999987654 79999999999999999999999
Q ss_pred Hhhcc
Q 011000 482 YESFS 486 (496)
Q Consensus 482 ~~~~~ 486 (496)
+..|-
T Consensus 390 ~~~~~ 394 (395)
T TIGR03320 390 PTVYL 394 (395)
T ss_pred HHHhh
Confidence 87763
No 51
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=92.21 E-value=0.37 Score=51.18 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCC-C-cEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHH
Q 011000 406 VTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVG-I-RTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 406 ~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~G-i-~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
.+...+.+.+++ .|.+.-... .+|+|.+.++.. .| + |++-+|.-.. .+|++.|-+..+|+..+++++..+
T Consensus 344 ~lv~~l~~a~~~~~g~~~~~~~-----~~g~~D~~~~~~-~g~~~~~v~fGPg~~~~aH~~nE~v~i~~l~~~~~~l~~~ 417 (427)
T PRK13013 344 PVVRSVAAAIERVLGRQADYVV-----SPGTYDQKHIDR-IGKLKNCIAYGPGILDLAHQPDEWVGIADMVDSAKVMALV 417 (427)
T ss_pred HHHHHHHHHHHHhhCCCCceee-----cCccCCHHHHHh-cCCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHHH
Confidence 556666666665 677654332 366777777765 45 4 6888886433 489999999999999999999999
Q ss_pred Hhhccccc
Q 011000 482 YESFSSID 489 (496)
Q Consensus 482 ~~~~~~~~ 489 (496)
+..|.+.+
T Consensus 418 l~~~~~~~ 425 (427)
T PRK13013 418 LADLLAGT 425 (427)
T ss_pred HHHHhccc
Confidence 98886653
No 52
>PRK06446 hypothetical protein; Provisional
Probab=92.05 E-value=0.28 Score=52.65 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEE--ecc--cccccccHhhhcCHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD--CGI--AQLSMHSVREICGTEDIDIAYRHF 478 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tid--iGi--P~l~MHS~rE~~~~~Dv~~~~~l~ 478 (496)
+..+...+.+..++ .+.+-+... ..+|+|.+.......|+|++. +|+ |--.+|++.|-+++++++.+++++
T Consensus 351 ~~~~v~~l~~a~~~~~g~~~~~~~----~~~g~~d~~~~~~~~gip~v~~~~g~g~~~~~~H~~dE~i~i~~l~~~~~~~ 426 (436)
T PRK06446 351 NSKVVKAMIESAKRVYGTEPVVIP----NSAGTQPMGLFVYKLGIRDIVSAIGVGGYYSNAHAPNENIRIDDYYKAIKHT 426 (436)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec----CCCCcchHHHHHHHhCCCcceeecccCCCCcCCcCCCCCcCHHHHHHHHHHH
Confidence 44555666665554 366544432 134555555555558999875 433 467899999999999999999999
Q ss_pred HHHHhhcc
Q 011000 479 KAFYESFS 486 (496)
Q Consensus 479 ~af~~~~~ 486 (496)
..|++.+.
T Consensus 427 ~~~~~~~~ 434 (436)
T PRK06446 427 EEFLKLYS 434 (436)
T ss_pred HHHHHHhc
Confidence 99998764
No 53
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=91.96 E-value=0.36 Score=51.19 Aligned_cols=76 Identities=12% Similarity=-0.039 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
.|..+...+++.+++.|.+..... .+|+|.+.+++. .|++++..|.... .+|++.|-++.+|+..+++++..+
T Consensus 324 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~ggtDa~~~~~-~~~~~v~fgPg~~~~aH~~dE~v~~e~l~~~~~vl~~~ 397 (401)
T TIGR01879 324 CSEELVAALTELCERLGYNARVMV-----SGAGHDAQILAP-IVPIGMIFIPSINGISHNPAEWSNITDCAEGAKVLYLM 397 (401)
T ss_pred CCHHHHHHHHHHHHHcCCCccccc-----cchHHHHHHHHh-hCCEEEEEecCCCCCcCCCCccCCHHHHHHHHHHHHHH
Confidence 477888999999998887765422 357787777764 6888887766543 479999999999999999999988
Q ss_pred Hhh
Q 011000 482 YES 484 (496)
Q Consensus 482 ~~~ 484 (496)
+..
T Consensus 398 i~~ 400 (401)
T TIGR01879 398 VYQ 400 (401)
T ss_pred HHh
Confidence 754
No 54
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=91.84 E-value=0.29 Score=51.13 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccc-ccccccHhhhcCHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIA-QLSMHSVREICGTEDIDIAYR 476 (496)
Q Consensus 403 t~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP-~l~MHS~rE~~~~~Dv~~~~~ 476 (496)
.+..+.+.+++.+++ .|.+..... .+|||.+.++.. .|||++.+|+- .-.+|++.|-+..+|+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~~~~~~~~~~ 374 (375)
T TIGR01910 305 PDSRLVKALEAIIKKVRGIEPEVLV-----STGGTDARFLRK-AGIPSIVYGPGDLETAHQVNEYISIKNLVESTK 374 (375)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEee-----eccchhHHHHHH-cCCcEEEECCCCccccCCCCceeEHHHHHHHhh
Confidence 355677888888876 577654432 357787877764 79999999976 467999999999999988765
No 55
>PRK07906 hypothetical protein; Provisional
Probab=91.76 E-value=0.46 Score=50.64 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHHCC--CCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--------cccccHhhhcCHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHN--LPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--------LSMHSVREICGTEDID 472 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~--Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~--------l~MHS~rE~~~~~Dv~ 472 (496)
.|..+...+++++++.. ...-... .+|+|.+.++. +.|+|++.+|.-- -.+|++.|-+..+|+.
T Consensus 340 ~~~~~v~~l~~a~~~~~~~~~~~~~~-----~~ggtDa~~~~-~~g~p~~~~gp~~~~~~~~~~~~~H~~~E~v~~~~l~ 413 (426)
T PRK07906 340 FDGPLVDAMNAALLAEDPGARVVPYM-----LSGGTDAKAFS-RLGIRCYGFAPLRLPPDLDFAALFHGVDERVPVDALR 413 (426)
T ss_pred CCcHHHHHHHHHHHHHCCCCeEeeee-----ecccCcHHHHH-hcCCceEEEeccccCccccccccCcCCCCceeHHHHH
Confidence 35677788888888753 2111111 35678888877 4899999887532 4699999999999999
Q ss_pred HHHHHHHHHHhhc
Q 011000 473 IAYRHFKAFYESF 485 (496)
Q Consensus 473 ~~~~l~~af~~~~ 485 (496)
..++++..++.++
T Consensus 414 ~~~~~~~~~l~~~ 426 (426)
T PRK07906 414 FGVRVLDRFLRTC 426 (426)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998753
No 56
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=91.61 E-value=0.37 Score=54.07 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=61.0
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--cccccHhhhcCHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~--l~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
.|+.+...+++.|++.|++++... .+|||.+.+.+. .|.+++..+.+- -..|++.|.++.+|+...++++..
T Consensus 510 ~d~~lv~~~~~a~~~~G~~~~~~~-----sgag~Da~~~a~-~~p~amif~~~g~~g~sHsp~E~v~~edL~~g~~vl~~ 583 (591)
T PRK13799 510 CAPELMKQLEAATDAAGVPLFELA-----SGAGHDAMKIAE-IMDQAMLFTRCGNAGISHNPLESMTADDMELSADAFLD 583 (591)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----cchHHHHHHHHh-hCCEEEEEEecCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 477888999999999999876422 367788877775 566665554432 247999999999999999999999
Q ss_pred HHhhccc
Q 011000 481 FYESFSS 487 (496)
Q Consensus 481 f~~~~~~ 487 (496)
++..+.+
T Consensus 584 ~l~~l~~ 590 (591)
T PRK13799 584 FLNNFAE 590 (591)
T ss_pred HHHHHhh
Confidence 9987753
No 57
>PRK07079 hypothetical protein; Provisional
Probab=91.36 E-value=0.49 Score=51.28 Aligned_cols=81 Identities=10% Similarity=-0.064 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEec--ccccccccHhhhcCHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCG--IAQLSMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiG--iP~l~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
+..+...+++.+++ .+.+.+.... .+|+|.+.+.....|||++.+| .|--.+|++.|-+.++|+..+++++..
T Consensus 374 ~~~~v~~l~~a~~~~~g~~~~~~~~----~~g~~d~~~~~~~~giP~v~~g~~~~~~~~H~~dE~v~l~~l~~~~~~~~~ 449 (469)
T PRK07079 374 DDPWVRWALASIARTTGKKPALLPN----LGGSLPNDVFADILGLPTLWVPHSYPACSQHAPNEHLLASVAREGLQIMAG 449 (469)
T ss_pred CCHHHHHHHHHHHHHhCCCCceecC----CCcchhHHHHHHHhCCCEEEecCCCCCccCcCCCCCCCHHHHHHHHHHHHH
Confidence 34455556555554 4655444321 3455555454444799999653 333358999999999999999999999
Q ss_pred HHhhcccc
Q 011000 481 FYESFSSI 488 (496)
Q Consensus 481 f~~~~~~~ 488 (496)
++..|.+-
T Consensus 450 ~~~~~~~~ 457 (469)
T PRK07079 450 LFWDLGEQ 457 (469)
T ss_pred HHHHHhcc
Confidence 99888653
No 58
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=91.25 E-value=0.36 Score=50.97 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+..+...+.+.+++ .|.+..... .+++|.|....++.|+|++.+|+-.. .+|++.|-++.+|+..+++++.++
T Consensus 315 ~~~~~~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~dE~i~i~~l~~~~~~~~~~ 389 (395)
T TIGR03526 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVKAAAMYAAI 389 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----eeeecccceehhhcCCCEEEECCcchhhccCCCceEEHHHHHHHHHHHHHH
Confidence 44555666666654 454433321 23444443333348999999998754 489999999999999999999999
Q ss_pred Hhhc
Q 011000 482 YESF 485 (496)
Q Consensus 482 ~~~~ 485 (496)
++.+
T Consensus 390 ~~~~ 393 (395)
T TIGR03526 390 PTVY 393 (395)
T ss_pred HHHh
Confidence 8875
No 59
>PRK07522 acetylornithine deacetylase; Provisional
Probab=90.30 E-value=0.53 Score=49.17 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCCChHHHHhcCCCCcEEEecc-cccccccHhhhcCHHHHHHHHHHHHHHHhhc
Q 011000 433 CGSTIGPILASGVGIRTVDCGI-AQLSMHSVREICGTEDIDIAYRHFKAFYESF 485 (496)
Q Consensus 433 gG~Tig~i~~s~~Gi~tidiGi-P~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~ 485 (496)
.|+|.+.++. ..|+|++.+|. +.-.+|++.|-+...|+...++++..++..+
T Consensus 331 ~~~td~~~~~-~~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~~~~~ 383 (385)
T PRK07522 331 AYGTEAGLFQ-RAGIPTVVCGPGSIEQAHKPDEFVELAQLAACEAFLRRLLASL 383 (385)
T ss_pred eeecchHHhc-cCCCCEEEECCCChhhCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 3567676665 58999999997 3457999999999999999999999998765
No 60
>PRK09104 hypothetical protein; Validated
Probab=90.28 E-value=0.64 Score=50.27 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCC-hHHHHhcCCCCcEEEecccc--cccccHhhhcCHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFK 479 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~T-ig~i~~s~~Gi~tidiGiP~--l~MHS~rE~~~~~Dv~~~~~l~~ 479 (496)
+..+...+.+.+++ .+.+..... .+|++ ....+....|||++.+|... -.+|++.|-++++|+..+++++.
T Consensus 381 ~~~~v~~l~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~gip~v~~g~G~~~~~aH~~nE~i~i~~l~~~~~~~~ 455 (464)
T PRK09104 381 DSPALAAAKAALSDEWGKPAVLIG-----SGGSIPIVGDFKRILGMDSLLVGFGLDDDRIHSPNEKYDLESFHKGIRSWA 455 (464)
T ss_pred CCHHHHHHHHHHHHHhCCCceecC-----CCCcHHHHHHHHHHhCCCEEEecCCCCCCCCcCCCCCcCHHHHHHHHHHHH
Confidence 44556666666554 566544321 24444 33333334799999898743 35999999999999999999999
Q ss_pred HHHhhcc
Q 011000 480 AFYESFS 486 (496)
Q Consensus 480 af~~~~~ 486 (496)
.++..+.
T Consensus 456 ~ll~~~~ 462 (464)
T PRK09104 456 RILAALA 462 (464)
T ss_pred HHHHHhh
Confidence 9987763
No 61
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=89.20 E-value=0.6 Score=49.67 Aligned_cols=76 Identities=16% Similarity=-0.014 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--cccccHhhhcCHHHHHHHHHHHHHHHh
Q 011000 406 VTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKAFYE 483 (496)
Q Consensus 406 ~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~--l~MHS~rE~~~~~Dv~~~~~l~~af~~ 483 (496)
.+...+++.+++.|+++-... ...+|+|.+.++.. .|+|++.+|... ..+|++.|-++..|+...++++..++.
T Consensus 329 ~l~~~~~~~~~~~~~~~~~~~---~~~~g~tDa~~~~~-~gip~v~~g~G~~~~~aH~~nE~i~i~~~~~~~~~~~~~~~ 404 (410)
T PRK06133 329 ALAEHAQGIYGELGRRLEPID---MGTGGGTDAAFAAG-SGKAAVLEGFGLVGFGAHSNDEYIELNSIVPRLYLLTRMIM 404 (410)
T ss_pred HHHHHHHHHHHHcCCCccccc---cCCCCCchHHHHHh-cCCCceEecccCCCCCCCCCCcEEEcccHHHHHHHHHHHHH
Confidence 455667777777777643211 11356776666654 699999855433 559999999999999999999998886
Q ss_pred hc
Q 011000 484 SF 485 (496)
Q Consensus 484 ~~ 485 (496)
.+
T Consensus 405 ~~ 406 (410)
T PRK06133 405 EL 406 (410)
T ss_pred Hh
Confidence 65
No 62
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=88.94 E-value=1.1 Score=47.36 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-cccccHhhhcCHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~-l~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+..+.+.+++.+++ .|.+ .... ..||++.+.+.+ +.|+|++.+|... =-+|++.|-+.++|++.+++++..+
T Consensus 329 ~~~~v~~l~~~~~~~~g~~--~~~~---~~G~~~da~~~~-~~~~~~~~fgp~~~~~~H~~~E~v~i~~l~~~~~~~~~~ 402 (409)
T COG0624 329 DSPLVAALAEAAEELLGLP--PEVS---TGGGTHDARFFA-RLGIPAVIFGPGDIGLAHQPNEYVELEDLVKGAKVLARL 402 (409)
T ss_pred chHHHHHHHHHHHHhhCCC--ceec---CCCCcchHHHHH-hcCCeeEEECCCCcccccCCCceeeHHHHHHHHHHHHHH
Confidence 55666666666666 5777 2222 134444666655 4779999999988 6999999999999999999999999
Q ss_pred Hhhccc
Q 011000 482 YESFSS 487 (496)
Q Consensus 482 ~~~~~~ 487 (496)
+..+..
T Consensus 403 l~~l~~ 408 (409)
T COG0624 403 LYELAE 408 (409)
T ss_pred HHHHhc
Confidence 987753
No 63
>PRK05111 acetylornithine deacetylase; Provisional
Probab=88.88 E-value=0.88 Score=47.53 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=43.4
Q ss_pred CCChHHHHhcCCCCcEEEecccc-cccccHhhhcCHHHHHHHHHHHHHHHhhc
Q 011000 434 GSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFYESF 485 (496)
Q Consensus 434 G~Tig~i~~s~~Gi~tidiGiP~-l~MHS~rE~~~~~Dv~~~~~l~~af~~~~ 485 (496)
++|.++++. +.|+|++.+|+.. -.+|++.|-++.+|+..+++++..++..+
T Consensus 329 ~~~Da~~~~-~~g~p~v~~G~g~~~~~H~~~E~v~~~~l~~~~~i~~~~~~~~ 380 (383)
T PRK05111 329 YCTEAPFIQ-QLGCPTLVLGPGSIEQAHQPDEYLELSFIKPTRELLRQLIHHF 380 (383)
T ss_pred eeccHHHHH-hcCCCEEEECCCchHhCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 456677665 5899999999985 34899999999999999999999998766
No 64
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=87.79 E-value=0.87 Score=46.93 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=41.5
Q ss_pred CCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHHH
Q 011000 433 CGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAFY 482 (496)
Q Consensus 433 gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af~ 482 (496)
.|+|.+.+++ ..|+|++.+|.-.. .+|++.|-++.+|+..+++++..|+
T Consensus 302 ~g~td~~~~~-~~Gip~v~~Gpg~~~~~H~~~E~v~i~~l~~~~~~~~~~~ 351 (352)
T PRK13007 302 YGWTDVARFS-ALGIPAVNFGPGDPALAHQRDEHVPVAQITACARILRRWL 351 (352)
T ss_pred cccchHHHHH-hCCCCEEEeCCCchhhccCCCCceEHHHHHHHHHHHHHHh
Confidence 4667766665 47999999997554 5999999999999999999999886
No 65
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=87.71 E-value=1 Score=50.59 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=59.7
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--cccccHhhhcCHHHHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~--l~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
.|+.+...+++.|++.|+++.... .+|||.+.+++. .+.+++-+|.-. -.+|++.|-++.+|+...++++..
T Consensus 508 ~d~~lv~~~~~aa~~~G~~~~~~~-----sggg~Da~~~a~-~~p~~mifgpg~~~g~sH~p~E~v~~edL~~g~~vl~~ 581 (591)
T PRK13590 508 SAPAWQQRWEAAVAALGLPLFRMP-----SGAGHDAMKLHE-IMPQAMLFVRGENAGISHNPLESSTADDMQLAVQAFQH 581 (591)
T ss_pred CCHHHHHHHHHHHHHcCCCcccCC-----cchhHHHHHHHH-HCCEEEEEEeeCCCCCCCCCccCCCHHHHHHHHHHHHH
Confidence 477888999999999998865321 367888877765 455565454321 247999999999999999999999
Q ss_pred HHhhccc
Q 011000 481 FYESFSS 487 (496)
Q Consensus 481 f~~~~~~ 487 (496)
++..+..
T Consensus 582 ll~~l~~ 588 (591)
T PRK13590 582 LLDQLAA 588 (591)
T ss_pred HHHHHhh
Confidence 9877653
No 66
>PRK13381 peptidase T; Provisional
Probab=87.20 E-value=1.9 Score=45.72 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=32.2
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 279 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 279 LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
-|+..++.++|.|+..+... .. ....++++|+..||+|+.|+.
T Consensus 137 ~DmKgg~aa~l~a~~~l~~~--~~--~~g~i~~~~~~dEE~g~~G~~ 179 (404)
T PRK13381 137 ADNKAAIAVVMTLLENLTEN--EV--EHGDIVVAFVPDEEIGLRGAK 179 (404)
T ss_pred cccHHHHHHHHHHHHHHHhc--CC--CCCCEEEEEEcccccccccHH
Confidence 69999999999888776432 11 234678899999999986554
No 67
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=86.92 E-value=0.91 Score=50.98 Aligned_cols=80 Identities=10% Similarity=-0.058 Sum_probs=52.4
Q ss_pred HHHH-HHHHHHhcCCChHHHHHHHHHHHHHCC---Cc------cccccc------cc---cccC-CCe-EEEeecCcEEE
Q 011000 59 SIVG-DLLDYLNESWTPFHATAEAKRLLIDAG---FE------LLNEND------EW---ELKP-GGG-YFFTRNMSCLV 117 (496)
Q Consensus 59 ~~a~-~~~~Fl~~s~T~~h~v~~~~~~L~~~G---F~------~l~e~~------~w---~l~~-g~k-~~~~r~g~~li 117 (496)
+++. +|.+.+..-|+-..-+..-.+.|.+-| +. .+.-++ .| .++. |=. +.+|..| ||+
T Consensus 163 ~I~~~Rl~~l~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~g-Nv~ 241 (591)
T PRK13799 163 RIAEIRINDKFGYTPAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVG-NVV 241 (591)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCC-CEE
Confidence 3444 688888888888776666666665543 32 222111 22 1233 555 8889888 999
Q ss_pred EEEeCCcccCCCCeeEEEEeccCC
Q 011000 118 AFAVGQKYSVGNGFHIIAAHTDSP 141 (496)
Q Consensus 118 A~~~G~~~~~~~g~~mi~AH~Dsp 141 (496)
+...|..+ +.+.+|+++|+|++
T Consensus 242 ~~~~g~~~--~~p~v~~gSHlDTV 263 (591)
T PRK13799 242 GRYKAADD--DAKTLITGSHYDTV 263 (591)
T ss_pred EEcCCCCC--CCCeEEEecccccc
Confidence 98877643 24579999999999
No 68
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=86.92 E-value=1.1 Score=49.11 Aligned_cols=41 Identities=32% Similarity=0.244 Sum_probs=31.0
Q ss_pred CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccccc
Q 011000 280 DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGA 327 (496)
Q Consensus 280 DNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA 327 (496)
||..|+.++|.+|.+.. . ......++|+..||+|+.|+...
T Consensus 115 D~k~gva~~l~~l~~~~-----~--~~~~i~~l~t~dEE~G~~ga~~l 155 (485)
T PRK15026 115 DNGIGMASALAVLADEN-----V--VHGPLEVLLTMTEEAGMDGAFGL 155 (485)
T ss_pred ccHHHHHHHHHHHHhCC-----C--CCCCEEEEEEcccccCcHhHHHh
Confidence 99999999998875432 1 12346788999999999887753
No 69
>PRK08201 hypothetical protein; Provisional
Probab=86.58 E-value=1.9 Score=46.40 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCCh---HHHHhcCCCCcEEEecccc--cccccHhhhcCHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTI---GPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRH 477 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Ti---g~i~~s~~Gi~tidiGiP~--l~MHS~rE~~~~~Dv~~~~~l 477 (496)
+......+.+.+++ .|.+.... .+|+|+ +.+. ...|+|++.+|.-. -.+|++.|-+.++|+..++++
T Consensus 373 ~~~~~~~l~~a~~~~~g~~~~~~------~~gg~~~~~~~~~-~~~gip~v~~GpG~~~~~~H~~nE~v~i~~l~~~~~~ 445 (456)
T PRK08201 373 DHPAIQAAARAYEAVYGTEAAFT------RMGGSIPVVETFS-SQLHIPIVLMGFGLPSENFHAPNEHFHLENFDKGLRT 445 (456)
T ss_pred CCHHHHHHHHHHHHHhCCCceec------CCCCcHHHHHHHH-HHhCCCEEEecCCCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 33455556555554 46654322 234553 4444 34899999997643 568999999999999999999
Q ss_pred HHHHHhhcc
Q 011000 478 FKAFYESFS 486 (496)
Q Consensus 478 ~~af~~~~~ 486 (496)
+..|+..+.
T Consensus 446 l~~~~~~~~ 454 (456)
T PRK08201 446 LVEYWHQLA 454 (456)
T ss_pred HHHHHHHhh
Confidence 999998774
No 70
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=86.42 E-value=1.2 Score=47.33 Aligned_cols=50 Identities=20% Similarity=0.026 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCC
Q 011000 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (496)
Q Consensus 74 ~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dsp 141 (496)
+..+.+++++.|++.||+.. .| ..| ||+|...|..+ +.+.+|+++|+|.+
T Consensus 39 e~~~~~~l~~~l~~~G~~v~----~~-----------~~g-Nl~a~~~g~~~--~~~~l~~~~H~DtV 88 (414)
T PRK12891 39 DREARDLFVAWARDAGCTVR----VD-----------AMG-NLFARRAGRDP--DAAPVMTGSHADSQ 88 (414)
T ss_pred HHHHHHHHHHHHHHCCCEEE----EC-----------CCC-CEEEEecCCCC--CCCeEEEEecccCC
Confidence 34588999999999999731 12 235 78887766432 13469999999997
No 71
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=86.15 E-value=1.1 Score=50.37 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=25.3
Q ss_pred eEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCC
Q 011000 106 GYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (496)
Q Consensus 106 k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dsp 141 (496)
++.+|.-| |+++...|..+ +.+.+|+++|+|++
T Consensus 231 ~v~~D~~G-Nl~~~~~g~~~--~~~~v~~gsHlDTV 263 (591)
T PRK13590 231 EVHIDAVG-NVVGRYKGSTP--QAKRLLTGSHYDTV 263 (591)
T ss_pred eeeECCCC-CEEEEecCCCC--CCCeEEEecccccC
Confidence 46666668 99998777543 23579999999998
No 72
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=85.95 E-value=1.2 Score=48.38 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+..+.+.+.+++++ .|.+.+... .+|+|.+.++. .||+++.+|..-. .+|++.|-++++++..++++|..+
T Consensus 388 ds~lv~~l~~a~~~v~G~~~~~~~-----~~ggTDa~~~~--~~i~~gv~gPG~~~~aH~~dE~V~i~el~~a~~iy~~~ 460 (466)
T TIGR01886 388 SDPLVQTLLKVYEKHTGKKGHEVI-----IGGGTYGRLLE--RGVAYGAMFEGGPDVMHQANEFMMLDDLILAAAIYAEA 460 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----ecCccHHHhcc--cccccccccCCCCCCccCCCcceEHHHHHHHHHHHHHH
Confidence 34666677776665 355554432 26788887775 3799888888754 589999999999999999999999
Q ss_pred Hhhc
Q 011000 482 YESF 485 (496)
Q Consensus 482 ~~~~ 485 (496)
+..|
T Consensus 461 i~~l 464 (466)
T TIGR01886 461 IYEL 464 (466)
T ss_pred HHHH
Confidence 8776
No 73
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=84.77 E-value=0.96 Score=46.74 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=39.5
Q ss_pred CCCChHHHHhcCCCCcEEEeccccc-ccccHhhhcCHHHHHHHHHHHHHH
Q 011000 433 CGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 481 (496)
Q Consensus 433 gG~Tig~i~~s~~Gi~tidiGiP~l-~MHS~rE~~~~~Dv~~~~~l~~af 481 (496)
+|+|.+.++.. .|||++.+|.-.. -+|++.|-++.+|+..+++++..+
T Consensus 315 ~~~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~ 363 (364)
T TIGR01892 315 SYGTEAPQFQE-LGAEAVVCGPGDIRQAHQPDEYVEIEDLVRCRAVLARL 363 (364)
T ss_pred cccccHHHHHh-CCCcEEEECCCChHhCCCCCceeeHHHHHHHHHHHHHh
Confidence 35677777654 7999999997553 489999999999999999998765
No 74
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=84.26 E-value=3.8 Score=44.61 Aligned_cols=57 Identities=9% Similarity=-0.051 Sum_probs=37.4
Q ss_pred CCC--hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCce
Q 011000 71 SWT--PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCL 143 (496)
Q Consensus 71 s~T--~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl 143 (496)
+|| +-.+++++++.|++.||+.- ++..| |+++...|.......+.+++.+|+|.+..
T Consensus 18 s~s~~e~~~~~~l~~~l~~~G~~~~---------------~~~~~-n~~~~~~~~~g~~~~~~l~l~~HlDtV~~ 76 (477)
T TIGR01893 18 RPSKNEKEVSNFIVNWAKKLGLEVK---------------QDEVG-NVLIRKPATPGYENHPPIVLQGHMDMVCE 76 (477)
T ss_pred CCCccHHHHHHHHHHHHHHcCCeEE---------------EeCCC-eEEEEEcCCCCCCCCCeEEEEeeccccCC
Confidence 444 35688999999999998621 12235 88887655321112246999999998753
No 75
>PRK06156 hypothetical protein; Provisional
Probab=83.56 E-value=2.5 Score=46.62 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc----ccccHhhhcCHHHHHHHHHHHH
Q 011000 405 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL----SMHSVREICGTEDIDIAYRHFK 479 (496)
Q Consensus 405 ~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l----~MHS~rE~~~~~Dv~~~~~l~~ 479 (496)
..+...+.+.+++ .|.+..... .+|+|.+.++. +++.+|.-.. .||++.|-+.++++..+++++.
T Consensus 439 ~~lv~~l~~a~~~~~G~~~~~~~-----~~ggTDa~~~~-----~~v~fGP~~~g~~~~aHt~dE~V~ie~l~~~~~i~~ 508 (520)
T PRK06156 439 GPWLKTLLDVFGHFTGLDAKPVA-----IAGSTNAKLFP-----NAVSFGPAMPGVKYTGHTENEFKTVEQFMLDLQMYT 508 (520)
T ss_pred CHHHHHHHHHHHHHhCCCCceee-----ecChhhhhhCC-----ccEEEcCCCCCCCCCCcCcccCCCHHHHHHHHHHHH
Confidence 3455555554443 466554432 26777776542 5788886322 3899999999999999999999
Q ss_pred HHHhhccc
Q 011000 480 AFYESFSS 487 (496)
Q Consensus 480 af~~~~~~ 487 (496)
.++..+..
T Consensus 509 ~~l~~l~~ 516 (520)
T PRK06156 509 EMLIRIGN 516 (520)
T ss_pred HHHHHHhc
Confidence 99988866
No 76
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=83.37 E-value=2.1 Score=45.35 Aligned_cols=51 Identities=18% Similarity=0.049 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCc
Q 011000 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (496)
Q Consensus 74 ~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspg 142 (496)
+.-+++++++.|++.||+.. .| ..+ ||+|...|..+ +.+.+++++|+|.+.
T Consensus 30 e~~~~~~l~~~~~~~G~~~~----~~-----------~~~-nl~a~~~g~~~--~~~~l~~~~H~DtV~ 80 (401)
T TIGR01879 30 DREAQDLFKKRMRAAGLEVR----FD-----------EVG-NLIGRKEGTEP--PLEVVLSGSHIDTVV 80 (401)
T ss_pred HHHHHHHHHHHHHHCCCEEE----Ee-----------cCC-cEEEEecCCCC--CCCEEEEecccccCC
Confidence 34588999999999999741 11 225 89998766532 124699999999984
No 77
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=83.32 E-value=3.4 Score=43.87 Aligned_cols=54 Identities=19% Similarity=-0.011 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCc
Q 011000 71 SWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (496)
Q Consensus 71 s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspg 142 (496)
++.+..+++++.+.|++.||+-- .+ ..+ ||+|...|... ..+.+++.+|+|.+.
T Consensus 34 ~~~e~~~~~~l~~~l~~~G~~~~----~~-----------~~~-nlia~~~g~~~--~~~~l~~~~H~DtVp 87 (414)
T PRK12890 34 SDEERAARALLAAWMRAAGLEVR----RD-----------AAG-NLFGRLPGRDP--DLPPLMTGSHLDTVP 87 (414)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEE----Ec-----------CCC-cEEEEeCCCCC--CCCEEEEeCcccCCC
Confidence 34467799999999999999731 11 124 89987755421 234699999999984
No 78
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=83.02 E-value=5.8 Score=42.80 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=42.7
Q ss_pred CCeeec-cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCC
Q 011000 271 NEFIFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAP 330 (496)
Q Consensus 271 ~e~I~s-~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~ 330 (496)
++++.| +++|-..|..+.|-+|.+.... ..-.+.++++..--||+-|+|..-|...
T Consensus 130 GDwlfGRGa~DMKsGlav~la~L~~fa~~----~~~~GNlLf~a~pdEE~~s~G~r~a~~~ 186 (553)
T COG4187 130 GDWLFGRGALDMKSGLAVHLACLEEFAAR----TDRQGNLLFMAVPDEEVESRGMREARPA 186 (553)
T ss_pred cCcccCCCchhhhhhhHHHHHHHHHHhhC----CCCCCcEEEEeccchhhhcccHHHHHHH
Confidence 455555 4689999999999999887643 1235568888999999999999887643
No 79
>PRK07338 hypothetical protein; Provisional
Probab=82.95 E-value=6.7 Score=41.31 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHh-cCCCh-----HHHHHHHHHHHHHCCCccccccccccccC------CCeEEEeecCcEEEEEEeCCcc
Q 011000 58 SSIVGDLLDYLN-ESWTP-----FHATAEAKRLLIDAGFELLNENDEWELKP------GGGYFFTRNMSCLVAFAVGQKY 125 (496)
Q Consensus 58 ~~~a~~~~~Fl~-~s~T~-----~h~v~~~~~~L~~~GF~~l~e~~~w~l~~------g~k~~~~r~g~~liA~~~G~~~ 125 (496)
.++.+.|.++++ .|+|. ..+.++++++|++.||+. +.|...+ .++.+....+.||+|...|+.
T Consensus 17 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~----~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~~- 91 (402)
T PRK07338 17 APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEI----ELIPLPPVEVIDADGRTLEQAHGPALHVSVRPEA- 91 (402)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcE----EEecCCccccccccccccccCcCCeEEEEECCCC-
Confidence 446677777777 44542 357889999999999973 2232111 011111223348988763321
Q ss_pred cCCCCeeEEEEeccCCc
Q 011000 126 SVGNGFHIIAAHTDSPC 142 (496)
Q Consensus 126 ~~~~g~~mi~AH~Dspg 142 (496)
.+.+++.+|+|-+-
T Consensus 92 ---~~~lll~gH~DvVp 105 (402)
T PRK07338 92 ---PRQVLLTGHMDTVF 105 (402)
T ss_pred ---CccEEEEeecCccC
Confidence 23599999999763
No 80
>PRK07205 hypothetical protein; Provisional
Probab=82.91 E-value=2.6 Score=45.28 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=51.6
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecc--c--ccccccHhhhcCHHHHHHHHHH
Q 011000 403 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGI--A--QLSMHSVREICGTEDIDIAYRH 477 (496)
Q Consensus 403 t~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGi--P--~l~MHS~rE~~~~~Dv~~~~~l 477 (496)
.+..+...+++++++ .|.+.-... .+|+|.+. ...+++.+|+ | ...+|++.|-+.++|++.++++
T Consensus 364 ~~~~lv~~l~~~~~~~~g~~~~~~~-----~gg~~~~~-----~~~~~i~~G~~~Pg~~~~aH~~nE~v~i~~l~~~~~~ 433 (444)
T PRK07205 364 LDSELVSTLMSVYQEKTGDDSPAQS-----SGGATFAR-----TMPNCVAFGALFPGAPQTEHQANEHIVLEDLYRAMDI 433 (444)
T ss_pred CCcHHHHHHHHHHHHHhCCCCceEE-----eccHHHHH-----hCCCcEEECCccCCCCCCCcCcccCccHHHHHHHHHH
Confidence 355667777777765 455432222 24444332 2357888995 4 4679999999999999999999
Q ss_pred HHHHHhhcc
Q 011000 478 FKAFYESFS 486 (496)
Q Consensus 478 ~~af~~~~~ 486 (496)
+..++.++.
T Consensus 434 l~~~l~~l~ 442 (444)
T PRK07205 434 YAEAIYRLT 442 (444)
T ss_pred HHHHHHHHh
Confidence 999987763
No 81
>PRK07907 hypothetical protein; Provisional
Probab=82.57 E-value=3.8 Score=44.06 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCC-h-HHHHhcCCCCcEEEecccc--cccccHhhhcCHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-I-GPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHF 478 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~T-i-g~i~~s~~Gi~tidiGiP~--l~MHS~rE~~~~~Dv~~~~~l~ 478 (496)
+..+...+.+.+++ .|.+..... .||++ . +.+.....++|++.+|.-. -.+|++.|-++++|+..+++++
T Consensus 365 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~g~~~~~~~~~~~~~~~~~v~~Gpg~~~~~aH~~nE~i~i~~l~~~~~~~ 439 (449)
T PRK07907 365 SGPAYDAARAAMREAWGKDPVDMG-----MGGSIPFIAELQEAFPQAEILVTGVEDPKTRAHSPNESVHLGELERAAVAE 439 (449)
T ss_pred CCHHHHHHHHHHHHHhCCCceecC-----CCCcHHHHHHHHHhcCCCcEEEeccCCCCCCCcCCCCCcCHHHHHHHHHHH
Confidence 44555555555554 477653221 23332 1 2233333468999888754 4689999999999999999999
Q ss_pred HHHHhhcc
Q 011000 479 KAFYESFS 486 (496)
Q Consensus 479 ~af~~~~~ 486 (496)
..+++.|.
T Consensus 440 ~~~l~~~~ 447 (449)
T PRK07907 440 ALLLARLA 447 (449)
T ss_pred HHHHHHHh
Confidence 99998874
No 82
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=82.24 E-value=4.7 Score=42.63 Aligned_cols=49 Identities=14% Similarity=0.004 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCC
Q 011000 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (496)
Q Consensus 74 ~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dsp 141 (496)
+..+++++.+.|++.||+- +.| ..+ |++|...|..+ .+.+|+.+|+|.+
T Consensus 38 e~~~~~~l~~~l~~~G~~~----~~~-----------~~~-nl~a~~~g~~~---~~~l~l~gH~DtV 86 (412)
T PRK12892 38 HVAARRRLAAWCEAAGLAV----RID-----------GIG-NVFGRLPGPGP---GPALLVGSHLDSQ 86 (412)
T ss_pred HHHHHHHHHHHHHHcCCEE----EEc-----------CCC-cEEEEecCCCC---CCeEEEEccccCC
Confidence 5678899999999999973 111 224 89887756432 2469999999997
No 83
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=82.04 E-value=2.8 Score=43.34 Aligned_cols=50 Identities=18% Similarity=0.052 Sum_probs=37.0
Q ss_pred CeeeccC-----CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 272 EFIFSGR-----LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 272 e~I~s~~-----LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
+.+.|++ .|+..++.++|.++..+.... .....++++|+..||.|+.|+.
T Consensus 87 ~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~----~~~~~v~~~~~~~EE~g~~G~~ 141 (361)
T TIGR01883 87 GIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE----TPHGTIEFIFTVKEELGLIGMR 141 (361)
T ss_pred CeEecCCCeEeeccccHHHHHHHHHHHHHHhcC----CCCCCEEEEEEcccccCchhHh
Confidence 4455666 699999999999888775321 1234688899999999987665
No 84
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=81.95 E-value=1.7 Score=45.28 Aligned_cols=50 Identities=14% Similarity=0.017 Sum_probs=35.3
Q ss_pred eeecc-CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 273 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 273 ~I~s~-~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
.|.|+ ..||+.++.++|.++..+...... .....+++|+..||+|+.|+.
T Consensus 97 ~i~grG~~D~k~~~a~~l~a~~~l~~~~~~---~~~~i~~~~~~~EE~g~~G~~ 147 (375)
T TIGR01910 97 KLYGRGATDMKGGLVALLYALKAIREAGIK---PNGNIILQSVVDEESGEAGTL 147 (375)
T ss_pred EEEecCccccchHHHHHHHHHHHHHHcCCC---CCccEEEEEEcCcccCchhHH
Confidence 34444 369999999999888776432111 244688899999999976655
No 85
>PRK05469 peptidase T; Provisional
Probab=81.87 E-value=5.1 Score=42.43 Aligned_cols=42 Identities=26% Similarity=0.188 Sum_probs=30.5
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 279 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 279 LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
.|++.++.+.+.|+..+.... . .....+.++|+..||+| .|+
T Consensus 139 ~D~Kgglaa~l~a~~~l~~~~-~--~~~g~v~~~f~~dEE~g-~Ga 180 (408)
T PRK05469 139 ADDKAGIAEIMTALEYLIAHP-E--IKHGDIRVAFTPDEEIG-RGA 180 (408)
T ss_pred ccchHHHHHHHHHHHHHHhCC-C--CCCCCEEEEEecccccC-CCH
Confidence 899999999998887664321 0 12346889999999987 443
No 86
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=81.65 E-value=1.5 Score=45.95 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=34.2
Q ss_pred eeccC-CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 274 IFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 274 I~s~~-LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
+.|++ .|++.++.++|.++..+... ....++++|+..||+|+.|+.
T Consensus 107 ~~grG~~D~k~~~~~~l~a~~~l~~~------~~~~v~~~~~~~EE~g~~G~~ 153 (394)
T PRK08651 107 VYGRGASDMKGGIAALLAAFERLDPA------GDGNIELAIVPDEETGGTGTG 153 (394)
T ss_pred EEecCccccchHHHHHHHHHHHHHhc------CCCCEEEEEecCccccchhHH
Confidence 33433 79999999999998877432 144678899999999985554
No 87
>PRK08262 hypothetical protein; Provisional
Probab=81.16 E-value=2.1 Score=46.57 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHCC--CCEeEEEeccCCCCCCChHHHHhcCC----CCcEEEeccc-ccccccHhhhcCHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKLHN--LPTQEFVVRNDMGCGSTIGPILASGV----GIRTVDCGIA-QLSMHSVREICGTEDIDIAYR 476 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~--Ip~Q~~~~r~D~~gG~Tig~i~~s~~----Gi~tidiGiP-~l~MHS~rE~~~~~Dv~~~~~ 476 (496)
|..+...+++.+++.. .+..... .+|||.+.++.... +++++.+|.- .-.+|++.|-+..+|+..+++
T Consensus 400 ~~~lv~~l~~a~~~~~g~~~~~~~~-----~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~~~~Ht~dE~i~i~~l~~~~~ 474 (486)
T PRK08262 400 DSAAYKLLAATIREVFPDVVVAPYL-----VVGATDSRHYSGISDNVYRFSPLRLSPEDLARFHGTNERISVANYARMIR 474 (486)
T ss_pred CCHHHHHHHHHHHHHCCCCccccce-----ecccccHHHHHHhcCCeEEECCccCCcccccCCCCCCCceeHHHHHHHHH
Confidence 5667778888887654 3433222 25788887766431 2344444432 245899999999999999999
Q ss_pred HHHHHHhhcc
Q 011000 477 HFKAFYESFS 486 (496)
Q Consensus 477 l~~af~~~~~ 486 (496)
++..++.++.
T Consensus 475 i~~~~l~~~~ 484 (486)
T PRK08262 475 FYYRLIENAA 484 (486)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 88
>PRK08596 acetylornithine deacetylase; Validated
Probab=80.74 E-value=2 Score=45.75 Aligned_cols=50 Identities=14% Similarity=0.000 Sum_probs=35.1
Q ss_pred eeecc-CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 273 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 273 ~I~s~-~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
.|.|+ ..|++.++.+++.|+..+...... .+..++++|+..||.|+.|+.
T Consensus 110 ~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~---~~~~v~~~~~~dEE~g~~G~~ 160 (421)
T PRK08596 110 WLYGRGAADMKGGLAGALFAIQLLHEAGIE---LPGDLIFQSVIGEEVGEAGTL 160 (421)
T ss_pred EEEeccccccchHHHHHHHHHHHHHHcCCC---CCCcEEEEEEeccccCCcCHH
Confidence 34444 459999999999888776432111 244688899999999986543
No 89
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=80.52 E-value=4.9 Score=46.02 Aligned_cols=150 Identities=19% Similarity=0.098 Sum_probs=87.8
Q ss_pred ccccCCCCCeeeccCCCchhhHHHHHHHHH---HcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHH
Q 011000 264 SCLGGANNEFIFSGRLDNLASSYCGLRALI---DSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIV 340 (496)
Q Consensus 264 ~~~~Gl~~e~I~s~~LDNr~~~~~~leal~---~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~ 340 (496)
..++|...+=+.-.+.|.=.|++.+++.-+ ...+.. . .+..+.+++.||-||-|+-|++== .+.
T Consensus 354 ~ViigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~g--w-rP~RtI~F~sWdAeEfGliGStE~----~E~------ 420 (702)
T KOG2195|consen 354 YVIIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKRG--W-RPRRTILFASWDAEEFGLLGSTEW----AEE------ 420 (702)
T ss_pred EEEEeccccccccCCcCCCccHHHHHHHHHHHHHHHHcC--C-CccceEEEEEccchhccccccHHH----HHH------
Confidence 344555555555559999999887754333 233222 2 245688999999999999887722 221
Q ss_pred hhccCCCCChhhHhhhcccce--EEEEecCCCCCCCCCccccCCCCCcCCCCcEEEEcCCCCcccCHHHHHHHHHHHHHC
Q 011000 341 GSLAHEHVSETSFECTIRQSF--LVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLH 418 (496)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~S~--~iS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~ 418 (496)
+...+..-. .|.+|++- =|| .+. +-.|++.+..+++++++..
T Consensus 421 ------------~~~~L~~~av~yin~d~~~--~~~--------------~~l--------~~~~~PlL~~li~~~~k~~ 464 (702)
T KOG2195|consen 421 ------------YLKNLKSRAVVYINVDNAV--LGD--------------YTL--------HVKTTPLLTDLIEEAAKSV 464 (702)
T ss_pred ------------HHHHhhheeEEEEeccccc--cCC--------------cee--------EEecCccHHHHHHHHHhcc
Confidence 112222223 34444333 221 222 2335888889999999986
Q ss_pred CCCEeEEE---eccCCCCCCC-hHHHHhcCCCCcEEEeccc--ccccccHhhh
Q 011000 419 NLPTQEFV---VRNDMGCGST-IGPILASGVGIRTVDCGIA--QLSMHSVREI 465 (496)
Q Consensus 419 ~Ip~Q~~~---~r~D~~gG~T-ig~i~~s~~Gi~tidiGiP--~l~MHS~rE~ 465 (496)
.=|.-... +.. .||+| ..+++. ..|||++++-.- .=.-||..++
T Consensus 465 ~~p~~~~~~~~v~~--~g~~Sd~~~F~~-~~GIpsv~~~f~~~yP~yhs~~dt 514 (702)
T KOG2195|consen 465 LSPDKGDQSNRVLS--LGGGSDYASFLQ-FAGIPSVDFAFNRTYPFYHSTYDT 514 (702)
T ss_pred CCCCccccceeEec--cCCCCcchhhcc-ccCcceeeeeecCCcceeecccCc
Confidence 65553322 222 35555 556655 589999987543 3346777666
No 90
>PLN02280 IAA-amino acid hydrolase
Probab=80.19 E-value=11 Score=41.16 Aligned_cols=78 Identities=10% Similarity=-0.055 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHHHHHC-CCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccc--------ccccccHhhhcCHHHHHH
Q 011000 403 TSGVTAFLFKEIAKLH-NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIA--------QLSMHSVREICGTEDIDI 473 (496)
Q Consensus 403 t~~~~~~~l~~ia~~~-~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP--------~l~MHS~rE~~~~~Dv~~ 473 (496)
.++.+...+++++.+. |.+.-.. ....+|+|.+.+++. ++|++..|+- ...+|++.|.++.+++..
T Consensus 387 n~~~l~~~~~~~a~~~~G~~~~~~---~~~~~g~tD~~~~~~--~vP~i~~glG~~~~~~G~~~~~Htp~e~id~~~L~~ 461 (478)
T PLN02280 387 NNDAMYEHVRKVAIDLLGPANFTV---VPPMMGAEDFSFYSQ--VVPAAFYYIGIRNETLGSTHTGHSPYFMIDEDVLPI 461 (478)
T ss_pred CCHHHHHHHHHHHHHhcCcccccc---CCCCeeechHHHHHh--hCCEEEEEEeecCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 3677888888888663 5442111 112357776666654 4999977422 236899999999999999
Q ss_pred HHHHHHHHHhhc
Q 011000 474 AYRHFKAFYESF 485 (496)
Q Consensus 474 ~~~l~~af~~~~ 485 (496)
.++++..+...+
T Consensus 462 ~~~~~~~~~~~~ 473 (478)
T PLN02280 462 GAAVHAAIAERY 473 (478)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 91
>PRK07473 carboxypeptidase; Provisional
Probab=79.81 E-value=2.1 Score=45.11 Aligned_cols=45 Identities=27% Similarity=0.251 Sum_probs=32.2
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
...|++.++.++|.|+..+...... ......++++..||+|+.|+
T Consensus 109 G~~D~Kgglaa~l~A~~~l~~~~~~---~~~~v~~~~~~dEE~g~~g~ 153 (376)
T PRK07473 109 GILDMKGGNYLALEAIRQLARAGIT---TPLPITVLFTPDEEVGTPST 153 (376)
T ss_pred chhhchHHHHHHHHHHHHHHHcCCC---CCCCEEEEEeCCcccCCccH
Confidence 3489999999999888766432101 12347888999999998764
No 92
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=79.72 E-value=2.8 Score=44.74 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=54.9
Q ss_pred eeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCCcHHHHHHHHHhhccCCCCChhhH
Q 011000 274 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSF 353 (496)
Q Consensus 274 I~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s~~~~d~l~ri~~~~~~~~~~~~~~ 353 (496)
+.-++.||-.|+.++||..+.+... .++..+.+++|.-||.|.+|++-.......+..+.+
T Consensus 222 ~~~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~~-------------- 282 (435)
T COG2234 222 TGPGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSEAYVKRLSKDLDKKI-------------- 282 (435)
T ss_pred CCCCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccHHHHhcCCcchhhhh--------------
Confidence 3348999999999999988877643 145578899999999999999987776654311111
Q ss_pred hhhcccceEEEEecCCCCCC
Q 011000 354 ECTIRQSFLVSADMAHGVHP 373 (496)
Q Consensus 354 ~~~l~~S~~iS~DvahA~~P 373 (496)
...|-.|+-...+|
T Consensus 283 ------~~viN~Dm~g~~~~ 296 (435)
T COG2234 283 ------ALVINLDMLGSPNP 296 (435)
T ss_pred ------heEEecccccCCCC
Confidence 24788888877653
No 93
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=79.04 E-value=8.7 Score=40.65 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCc
Q 011000 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (496)
Q Consensus 74 ~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspg 142 (496)
++.+++++.+.|++.||+.. . +..+ |++|...|..+ ..+.+++.+|+|.+-
T Consensus 39 e~~~~~~l~~~l~~~G~~~~----~-----------~~~~-n~~a~~~g~~~--~~~~l~l~~H~DtVp 89 (412)
T PRK12893 39 DREARDLLAQWMEEAGLTVS----V-----------DAIG-NLFGRRAGTDP--DAPPVLIGSHLDTQP 89 (412)
T ss_pred HHHHHHHHHHHHHHcCCEEE----E-----------cCCC-cEEEEeCCCCC--CCCEEEEEecccCCC
Confidence 47789999999999999731 1 1124 78887756431 134699999999963
No 94
>PRK07205 hypothetical protein; Provisional
Probab=78.81 E-value=2.5 Score=45.43 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=35.0
Q ss_pred eeeccC-CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 273 FIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 273 ~I~s~~-LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
.|.|++ .|++.++.+.|.|+..+...... .+..+.+++...||+|+.|.
T Consensus 108 ~lyGRGa~DmKgglaa~l~Al~~l~~~~~~---~~~~i~l~~~~dEE~g~~g~ 157 (444)
T PRK07205 108 CLFGRGTQDDKGPSMAALYAVKALLDAGVQ---FNKRIRFIFGTDEETLWRCM 157 (444)
T ss_pred EEEECCcccCcHHHHHHHHHHHHHHHcCCC---CCCcEEEEEECCcccCcccH
Confidence 444544 89999999999998876432111 23457889999999988653
No 95
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=78.62 E-value=2.5 Score=44.11 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=34.0
Q ss_pred eeeccC-CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 273 FIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 273 ~I~s~~-LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
.+.|++ .|++.++.+++.|+..+..... .......++|+..||+|+.|+.
T Consensus 92 ~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~---~~~~~i~l~~~~dEE~g~~G~~ 142 (377)
T PRK08588 92 KLYGRGATDMKSGLAALVIAMIELKEQGQ---LLNGTIRLLATAGEEVGELGAK 142 (377)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHcCC---CCCCcEEEEEEcccccCchhHH
Confidence 344544 4999999998888776543211 1234688899999999876554
No 96
>PRK06915 acetylornithine deacetylase; Validated
Probab=78.52 E-value=2.8 Score=44.52 Aligned_cols=49 Identities=16% Similarity=0.004 Sum_probs=34.2
Q ss_pred eeeccCC-CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 273 FIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 273 ~I~s~~L-DNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
.+.|++- |++.++.++|.|+..+...... .+..+.++++..||+|+.|+
T Consensus 126 ~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~---~~~~v~~~~~~dEE~g~~G~ 175 (422)
T PRK06915 126 RIYGRGTTDMKGGNVALLLAMEALIESGIE---LKGDVIFQSVIEEESGGAGT 175 (422)
T ss_pred EEEecCcccchHHHHHHHHHHHHHHHcCCC---CCCcEEEEEecccccCCcch
Confidence 4556665 9999999998887766432111 23457888999999998754
No 97
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=77.99 E-value=2.9 Score=43.17 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=34.2
Q ss_pred eeecc-CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 273 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 273 ~I~s~-~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
.|.|+ ..|++.++.++|.++..+... .+ .....++|+..||+|+.|+.
T Consensus 90 ~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~---~~~v~~~~~~~EE~g~~G~~ 138 (364)
T TIGR01892 90 RLYGRGTCDMKGFLACALAAAPDLAAE--QL---KKPLHLALTADEEVGCTGAP 138 (364)
T ss_pred EEEecCccccchHHHHHHHHHHHHHhc--Cc---CCCEEEEEEeccccCCcCHH
Confidence 34443 379999999999888766432 12 33578899999999986654
No 98
>PRK08262 hypothetical protein; Provisional
Probab=77.52 E-value=2.9 Score=45.49 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=34.7
Q ss_pred eecc-CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 274 IFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 274 I~s~-~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
|.|+ ..|+..++.++|.|+..+++.... .....+++|...||+|+.|+.
T Consensus 147 lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~---l~~~I~llf~~dEE~g~~G~~ 196 (486)
T PRK08262 147 VWGRGALDDKGSLVAILEAAEALLAQGFQ---PRRTIYLAFGHDEEVGGLGAR 196 (486)
T ss_pred EEecCccccchhHHHHHHHHHHHHHcCCC---CCCeEEEEEecccccCCcCHH
Confidence 3343 379999999999988766432111 234678899999999987543
No 99
>PRK06837 acetylornithine deacetylase; Provisional
Probab=77.12 E-value=5.7 Score=42.40 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHCCCcccc-cccccccc--CC-Ce--EEEeecCcEEEEEEeCCcccCCCCeeEEE
Q 011000 62 GDLLDYLNESWTPFHATAEAKRLLIDAGFELLN-ENDEWELK--PG-GG--YFFTRNMSCLVAFAVGQKYSVGNGFHIIA 135 (496)
Q Consensus 62 ~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~-e~~~w~l~--~g-~k--~~~~r~g~~liA~~~G~~~~~~~g~~mi~ 135 (496)
++|+++=.-++-+..+++++++.|++.||..-. +.+.+.+. ++ ++ ...+.. .||+|...|..+ ..+.+++.
T Consensus 27 ~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nl~a~~~g~~~--~~~~il~~ 103 (427)
T PRK06837 27 QDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGA-PNVVGTYRPAGK--TGRSLILQ 103 (427)
T ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCC-ceEEEEecCCCC--CCCeEEEE
Confidence 344443344555678999999999999997311 11111111 11 01 122223 488887655432 12359999
Q ss_pred EeccCC
Q 011000 136 AHTDSP 141 (496)
Q Consensus 136 AH~Dsp 141 (496)
+|+|.+
T Consensus 104 gH~DvV 109 (427)
T PRK06837 104 GHIDVV 109 (427)
T ss_pred eecccC
Confidence 999987
No 100
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=76.33 E-value=3.1 Score=43.88 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=33.9
Q ss_pred eeccCC-CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcc-ccc
Q 011000 274 IFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD-SYQ 325 (496)
Q Consensus 274 I~s~~L-DNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~-ga~ 325 (496)
|.|++- |+..++.+++.|+..+.... . .....++++|+..||+|+. |+.
T Consensus 105 iyGrG~~D~K~~~aa~l~a~~~l~~~~--~-~~~~~v~l~~~~dEE~g~~~G~~ 155 (400)
T TIGR01880 105 IYARGAQDMKCVGVQYLEAVRNLKASG--F-KFKRTIHISFVPDEEIGGHDGME 155 (400)
T ss_pred EEEcccccccHHHHHHHHHHHHHHHcC--C-CCCceEEEEEeCCcccCcHhHHH
Confidence 445554 99999999998887764321 1 1234678899999999863 553
No 101
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=75.68 E-value=7 Score=40.86 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCce
Q 011000 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCL 143 (496)
Q Consensus 74 ~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl 143 (496)
+.-+++++.++|++.||... +.+...+++.......||+|...|... .+.+++.+|+|.+..
T Consensus 29 e~~~~~~l~~~l~~~G~~~~-----~~~~~~~~~~~~~~~~nl~~~~~g~~~---~~~lll~~H~Dtvp~ 90 (400)
T PRK13983 29 EKEKAEYLESLLKEYGFDEV-----ERYDAPDPRVIEGVRPNIVAKIPGGDG---KRTLWIISHMDVVPP 90 (400)
T ss_pred HHHHHHHHHHHHHHcCCceE-----EEEecCCcccccCCCccEEEEecCCCC---CCeEEEEeeccccCC
Confidence 46788999999999999721 111111211111112378887655421 236999999998743
No 102
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=75.22 E-value=3.8 Score=43.55 Aligned_cols=43 Identities=21% Similarity=0.082 Sum_probs=31.3
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 279 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 279 LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
.|+..++.++|.++..+... .. .....++++|+..||+|+.|+
T Consensus 135 ~D~kgg~a~~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~G~ 177 (410)
T PRK06133 135 ADDKGGVAVILHALKILQQL--GF-KDYGTLTVLFNPDEETGSPGS 177 (410)
T ss_pred ccchHHHHHHHHHHHHHHHc--CC-CCCCCEEEEEECCcccCCccH
Confidence 79999999999887766432 11 123457888999999987654
No 103
>PRK09133 hypothetical protein; Provisional
Probab=74.35 E-value=3.8 Score=44.38 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=33.7
Q ss_pred eeeccC-CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccc-cCcccc
Q 011000 273 FIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEE-VGSDSY 324 (496)
Q Consensus 273 ~I~s~~-LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEE-VGs~ga 324 (496)
+|.|++ .|++.++.+.|.++..+..... .....++++++..|| .|+.|+
T Consensus 133 ~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~~g~~G~ 183 (472)
T PRK09133 133 YFYGRGTSDDKADAAIWVATLIRLKREGF---KPKRDIILALTGDEEGTPMNGV 183 (472)
T ss_pred EEEecCcccchHHHHHHHHHHHHHHhcCC---CCCCCEEEEEECccccCccchH
Confidence 455554 5999999999988877643211 124468889999999 566544
No 104
>PRK08652 acetylornithine deacetylase; Provisional
Probab=74.27 E-value=3.6 Score=42.10 Aligned_cols=42 Identities=21% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 278 RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 278 ~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
..|++.++.+++.|+..+... .....++++|+..||+|+.|+
T Consensus 85 ~~D~Kg~~a~~l~a~~~l~~~-----~~~~~v~~~~~~dEE~g~~G~ 126 (347)
T PRK08652 85 ACDAKGGVAAILLALEELGKE-----FEDLNVGIAFVSDEEEGGRGS 126 (347)
T ss_pred chhhhHHHHHHHHHHHHHhhc-----ccCCCEEEEEecCcccCChhH
Confidence 579999999999998876431 123357888999999998654
No 105
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=74.20 E-value=8.7 Score=39.87 Aligned_cols=67 Identities=18% Similarity=0.028 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEe
Q 011000 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (496)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH 137 (496)
.++.++|+..=.-++.+..+.+++.+.|++.||+.. .+ +. +..+ |+++.. |.. .+.+++.+|
T Consensus 5 ~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~----~~--~~------~~~~-n~~~~~-g~~----~~~i~l~~H 66 (375)
T PRK13009 5 LELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCE----RM--DF------GDVK-NLWARR-GTE----GPHLCFAGH 66 (375)
T ss_pred HHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEE----Ee--cc------CCCc-EEEEEe-cCC----CCEEEEEee
Confidence 345566666666667778899999999999999731 11 11 1124 788754 542 246999999
Q ss_pred ccCCc
Q 011000 138 TDSPC 142 (496)
Q Consensus 138 ~Dspg 142 (496)
+|.+-
T Consensus 67 ~D~Vp 71 (375)
T PRK13009 67 TDVVP 71 (375)
T ss_pred cccCC
Confidence 99863
No 106
>PRK07522 acetylornithine deacetylase; Provisional
Probab=73.76 E-value=4 Score=42.53 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=32.1
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
...|++.++.+++.|+..+... .+ .....++|+..||+|++|+.
T Consensus 101 G~~D~Kg~~a~~l~a~~~l~~~--~~---~~~i~~~~~~dEE~g~~G~~ 144 (385)
T PRK07522 101 GTCDMKGFIAAALAAVPELAAA--PL---RRPLHLAFSYDEEVGCLGVP 144 (385)
T ss_pred cccccchHHHHHHHHHHHHHhC--CC---CCCEEEEEEeccccCCccHH
Confidence 4479999999998888766432 12 34578899999999875443
No 107
>PRK07906 hypothetical protein; Provisional
Probab=73.09 E-value=13 Score=39.59 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCce
Q 011000 75 FHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCL 143 (496)
Q Consensus 75 ~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspgl 143 (496)
..+++++.+.|++.||.. +.+...+ ..+ |++|...|+.+ +.+.+++.+|+|.+--
T Consensus 25 ~~~~~~l~~~l~~~G~~~----~~~~~~~-------~~~-nv~~~~~g~~~--~~~~lll~~H~DtVp~ 79 (426)
T PRK07906 25 REAAEYVAEKLAEVGLEP----TYLESAP-------GRA-NVVARLPGADP--SRPALLVHGHLDVVPA 79 (426)
T ss_pred HHHHHHHHHHHHhCCCCe----EEeecCC-------Cce-EEEEEEeCCCC--CCCcEEEEcccccCCC
Confidence 358899999999999973 1222111 123 89887766432 1246999999998754
No 108
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=72.95 E-value=4.3 Score=41.67 Aligned_cols=43 Identities=16% Similarity=0.004 Sum_probs=33.4
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQG 326 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~g 326 (496)
...|+..++.+.+.|+..+... ....+++++..||.|+.|...
T Consensus 79 G~~D~Kg~~aa~l~a~~~l~~~-------~~~i~~~~~~dEE~g~~G~~~ 121 (336)
T TIGR01902 79 GAVDAKGPLIAMIFATWLLNEK-------GIKVIVSGLVDEESSSKGARE 121 (336)
T ss_pred cccCCCcHHHHHHHHHHHHHhC-------CCcEEEEEEeCcccCCccHHH
Confidence 4689999999999988777431 335788899999998876653
No 109
>PRK05111 acetylornithine deacetylase; Provisional
Probab=72.84 E-value=4.7 Score=42.08 Aligned_cols=43 Identities=19% Similarity=0.032 Sum_probs=32.5
Q ss_pred CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 278 RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 278 ~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
..|++.++.++|.|+..+... .+ +....++|+..||+|+.|+.
T Consensus 109 ~~D~Kg~~a~~l~a~~~l~~~--~~---~~~i~~~~~~~EE~g~~G~~ 151 (383)
T PRK05111 109 TADMKGFFAFILEALRDIDLT--KL---KKPLYILATADEETSMAGAR 151 (383)
T ss_pred cccccHHHHHHHHHHHHHhhc--CC---CCCeEEEEEeccccCcccHH
Confidence 489999999999888776432 12 33578889999999987655
No 110
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=71.88 E-value=4.4 Score=41.88 Aligned_cols=42 Identities=19% Similarity=0.003 Sum_probs=31.9
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
...|++.++.+++.|+..+... .....++++..||.|+.|+.
T Consensus 89 G~~DmKgg~aa~l~a~~~l~~~-------~~~i~~~~~~dEE~g~~G~~ 130 (346)
T PRK00466 89 GAVDAKGPLISMIIAAWLLNEK-------GIKVMVSGLADEESTSIGAK 130 (346)
T ss_pred CccccchHHHHHHHHHHHHHHc-------CCCEEEEEEcCcccCCccHH
Confidence 4489999999999988876432 22368889999999886644
No 111
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=71.81 E-value=12 Score=38.73 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEec
Q 011000 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (496)
Q Consensus 59 ~~a~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~ 138 (496)
++.++++.+=.-++.+.-+.+++.++|++.||+.- .+..| |++|.. |+. .+.+++.+|+
T Consensus 10 ~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~---------------~~~~~-n~i~~~-~~~----~~~l~~~~H~ 68 (348)
T PRK04443 10 ELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAW---------------VDEAG-NARGPA-GDG----PPLVLLLGHI 68 (348)
T ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEE---------------EcCCC-cEEEEc-CCC----CCEEEEEeec
Confidence 34445554444455566789999999999999731 11124 677754 532 2469999999
Q ss_pred cCCc
Q 011000 139 DSPC 142 (496)
Q Consensus 139 Dspg 142 (496)
|.+.
T Consensus 69 DtVp 72 (348)
T PRK04443 69 DTVP 72 (348)
T ss_pred cccC
Confidence 9884
No 112
>PRK09104 hypothetical protein; Validated
Probab=71.59 E-value=4.4 Score=43.76 Aligned_cols=48 Identities=17% Similarity=0.020 Sum_probs=33.3
Q ss_pred eecc-CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 274 IFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 274 I~s~-~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
|.|+ ..|++.++.+.+.|+..+...... .+....+++...||+|+.|.
T Consensus 121 lyGRG~~D~Kg~laa~l~a~~~l~~~~~~---~~~~i~~~~~~dEE~g~~g~ 169 (464)
T PRK09104 121 IVARGASDDKGQLMTFVEACRAWKAVTGS---LPVRVTILFEGEEESGSPSL 169 (464)
T ss_pred EEEecccCCcHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECccccCCccH
Confidence 3343 489999999999888776432111 23357788999999998643
No 113
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=70.31 E-value=13 Score=39.45 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCc
Q 011000 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (496)
Q Consensus 74 ~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspg 142 (496)
+.-+.+++.+.|++.||+.- .+ ..+ ||+|...|... ..+.+++.+|+|.+.
T Consensus 36 e~~~a~~l~~~l~~~g~~~~----~~-----------~~~-nl~a~~~g~~~--~~~~l~l~gH~DtVp 86 (413)
T PRK09290 36 DLQARDLFAEWMEAAGLTVR----VD-----------AVG-NLFGRLEGRDP--DAPAVLTGSHLDTVP 86 (413)
T ss_pred HHHHHHHHHHHHHHcCCEEE----Ec-----------CCC-cEEEEecCCCC--CCCEEEEecCccCCC
Confidence 55689999999999999731 11 123 78887754321 124699999999974
No 114
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=70.02 E-value=14 Score=38.33 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHH-CCC-CEeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc
Q 011000 404 SGVTAFLFKEIAKL-HNL-PTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL 457 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~I-p~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l 457 (496)
|..+...+++.+++ .|. ++.... ...+|||.+..++. .+|++-+.+|++
T Consensus 288 ~~~l~~~l~~a~~~~~g~~~~~~~~---~~~~gg~Da~~~~~--~~P~~~~f~~~~ 338 (363)
T TIGR01891 288 DPALTQILKEVARHVVGPENVAEDP---EVTMGSEDFAYYSQ--KVPGAFFFLGIG 338 (363)
T ss_pred CHHHHHHHHHHHHHhcCccceeccC---CCCccccCHHHHHH--hCCeeEEEEecC
Confidence 66778899999988 563 332211 01357777666664 499999999999
No 115
>PRK07318 dipeptidase PepV; Reviewed
Probab=69.92 E-value=5.1 Score=43.41 Aligned_cols=44 Identities=16% Similarity=-0.017 Sum_probs=32.0
Q ss_pred CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 278 RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 278 ~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
..|++.++.+++.|+..++... . .....+.++++..||+|+.|+
T Consensus 116 ~~DmKgg~aa~l~Al~~l~~~g--~-~~~~~i~l~~~~DEE~g~~G~ 159 (466)
T PRK07318 116 TSDDKGPTMAAYYALKIIKELG--L-PLSKKVRFIVGTDEESGWKCM 159 (466)
T ss_pred cccCcHHHHHHHHHHHHHHHcC--C-CCCccEEEEEEcccccCchhH
Confidence 3799999999998887764321 1 113357888999999998655
No 116
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=68.15 E-value=6.8 Score=40.69 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEecc
Q 011000 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTD 139 (496)
Q Consensus 60 ~a~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~D 139 (496)
+.++|+..=.-|+.+.-++++++++|++.||+.- .+.+ +..+ |+++.. |+. .+.+++.+|+|
T Consensus 4 ~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~----~~~~--------~~~~-~~~~~~-g~~----~~~i~~~~H~D 65 (370)
T TIGR01246 4 LAKELISRPSVTPNDAGCQDIIAERLEKLGFEIE----WMHF--------GDTK-NLWATR-GTG----EPVLAFAGHTD 65 (370)
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEE----EEec--------CCCc-eEEEEe-cCC----CcEEEEEcccc
Confidence 4455665555666667789999999999999831 1111 1123 787753 432 23599999999
Q ss_pred CC
Q 011000 140 SP 141 (496)
Q Consensus 140 sp 141 (496)
.+
T Consensus 66 tV 67 (370)
T TIGR01246 66 VV 67 (370)
T ss_pred cc
Confidence 76
No 117
>PRK06446 hypothetical protein; Provisional
Probab=67.86 E-value=5.6 Score=42.65 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=32.9
Q ss_pred eccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccc
Q 011000 275 FSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 323 (496)
Q Consensus 275 ~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~g 323 (496)
.=.+-|++.++.++|.|+.++.... . ......++|+..||+|+.|
T Consensus 98 GRGa~DmKgglaa~l~A~~~l~~~~-~---~~~~i~~~~~~dEE~g~~g 142 (436)
T PRK06446 98 ARGASDNKGTLMARLFAIKHLIDKH-K---LNVNVKFLYEGEEEIGSPN 142 (436)
T ss_pred EEeccCCcHHHHHHHHHHHHHHHcC-C---CCCCEEEEEEcccccCCHh
Confidence 3355899999999999987764211 1 2345778899999999865
No 118
>PRK13004 peptidase; Reviewed
Probab=67.45 E-value=16 Score=38.53 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCc
Q 011000 72 WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (496)
Q Consensus 72 ~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspg 142 (496)
..++.+.+++.+.|++.||+.. .++..+ |++|...|+ ++.+++.+|+|.+-
T Consensus 32 ~~e~~~a~~l~~~l~~~G~~~~--------------~~~~~~-n~~a~~~~~-----~~~i~~~~H~DtVp 82 (399)
T PRK13004 32 GDEKRVVKRIKEEMEKVGFDKV--------------EIDPMG-NVLGYIGHG-----KKLIAFDAHIDTVG 82 (399)
T ss_pred CchHHHHHHHHHHHHHcCCcEE--------------EEcCCC-eEEEEECCC-----CcEEEEEeccCccC
Confidence 3477889999999999999621 012234 788765332 23699999999875
No 119
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=67.09 E-value=6.5 Score=41.69 Aligned_cols=48 Identities=15% Similarity=-0.029 Sum_probs=34.0
Q ss_pred eeec-cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccc
Q 011000 273 FIFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 323 (496)
Q Consensus 273 ~I~s-~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~g 323 (496)
.|.| ...|++.++.++|.|+..+.... . .....+.++++..||+|+.+
T Consensus 115 ~iyGrGa~D~Kg~~aa~l~a~~~l~~~~--~-~~~~~v~~~~~~dEE~g~~~ 163 (427)
T PRK13013 115 RIYGRGACDMKGGLAASIIAAEAFLAVY--P-DFAGSIEISGTADEESGGFG 163 (427)
T ss_pred EEEeccccccchHHHHHHHHHHHHHHhC--C-CCCccEEEEEEeccccCChh
Confidence 3444 36899999999998887764321 1 12346788899999998763
No 120
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=63.41 E-value=10 Score=39.00 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=30.3
Q ss_pred eeccCC-CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 011000 274 IFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 321 (496)
Q Consensus 274 I~s~~L-DNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs 321 (496)
|.|++- |++.++.++|.|+..+.. ......++|+..||+|+
T Consensus 88 i~GrG~~D~Kg~~a~~l~a~~~l~~-------~~~~i~~~~~~~EE~~~ 129 (352)
T PRK13007 88 LYGCGASDMKSGLAVMLHLAATLAE-------PAHDLTLVFYDCEEVEA 129 (352)
T ss_pred EEccCcccccHHHHHHHHHHHHhhc-------cCCCeEEEEEecccccC
Confidence 444443 999999999988877632 23457888999999986
No 121
>PLN02280 IAA-amino acid hydrolase
Probab=62.33 E-value=19 Score=39.46 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeE
Q 011000 58 SSIVGDLLDYLNESW----TPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHI 133 (496)
Q Consensus 58 ~~~a~~~~~Fl~~s~----T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~m 133 (496)
.++.+++..++...| -++.+++++++.|++.||+... .. .+.+++|.. |+.. .+.++
T Consensus 96 ~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~-------~~--------~~~~vva~~-g~~~---~~~I~ 156 (478)
T PLN02280 96 VAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRY-------PL--------AKTGIRAWI-GTGG---PPFVA 156 (478)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEe-------cC--------CCCEEEEEE-CCCC---CCEEE
Confidence 346678888899999 4578999999999999998421 01 123788875 6421 23699
Q ss_pred EEEeccCCce
Q 011000 134 IAAHTDSPCL 143 (496)
Q Consensus 134 i~AH~Dspgl 143 (496)
+-+|||.+-.
T Consensus 157 l~gh~DaVP~ 166 (478)
T PLN02280 157 VRADMDALPI 166 (478)
T ss_pred EEEecCCCcc
Confidence 9999998753
No 122
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=62.07 E-value=9.2 Score=41.55 Aligned_cols=46 Identities=20% Similarity=0.048 Sum_probs=32.5
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
...|++.++.+.+.|+..++... . .....+.+++...||+|+.|..
T Consensus 114 G~~D~Kg~~~a~l~a~~~l~~~~--~-~~~~~i~~~~~~dEE~g~~g~~ 159 (466)
T TIGR01886 114 GASDDKGPSLAAYYAMKILKELG--L-PPSKKIRFVVGTNEETGWVDMD 159 (466)
T ss_pred CccccchHHHHHHHHHHHHHHhC--C-CCCCCEEEEEECccccCcccHH
Confidence 34799999999888877664321 1 1234578889999999987654
No 123
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=58.93 E-value=13 Score=40.24 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecc--c--ccccccHhhhcCHHHHHHHHHHH
Q 011000 404 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGI--A--QLSMHSVREICGTEDIDIAYRHF 478 (496)
Q Consensus 404 ~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGi--P--~l~MHS~rE~~~~~Dv~~~~~l~ 478 (496)
+..+...+.++.++ .|.+.+.... +|+|.+.... +++.+|+ | ...+|++.|-++++|+..+.++|
T Consensus 374 ~~~lv~~l~~~~~~~~g~~~~~~~~-----~ggtda~~~~-----~~i~~Gp~~pG~~~~aH~~dE~v~i~~l~~~~~i~ 443 (447)
T TIGR01887 374 DDPLVQTLMKVYEKQTGDEGTPVAI-----GGGTYARLME-----NGVAFGALFPGEEDTMHQANEYIMIDDLLLATAIY 443 (447)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeEe-----cchhhhhhCC-----CcEEeCCCCCCCCCCccCCCcceeHHHHHHHHHHH
Confidence 44566666666664 4555554432 4667665532 3577775 2 34589999999999999999998
Q ss_pred HHHH
Q 011000 479 KAFY 482 (496)
Q Consensus 479 ~af~ 482 (496)
..++
T Consensus 444 ~~~~ 447 (447)
T TIGR01887 444 AEAI 447 (447)
T ss_pred HHhC
Confidence 7653
No 124
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=57.80 E-value=11 Score=40.69 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=32.4
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
...|+..++.+++.|+..+... .. .......++++..||+|+.|..
T Consensus 103 Ga~D~KG~laa~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~g~~ 148 (447)
T TIGR01887 103 GTLDDKGPTIAALYAMKILKEL--GL-KLKKKIRFIFGTDEETGWACID 148 (447)
T ss_pred CcccCcHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEECCcccCcHhHH
Confidence 3469999999999888766432 11 1234578889999999987644
No 125
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=57.36 E-value=35 Score=35.90 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=35.6
Q ss_pred CCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCc
Q 011000 71 SWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (496)
Q Consensus 71 s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspg 142 (496)
+..++.+.+++.+.|++.||+... . +..+ +++|.. |.. .+.+++.+|+|.+.
T Consensus 29 s~~e~~~~~~l~~~l~~~g~~~~~---~-----------~~~~-~v~~~~-g~~----~~~l~l~~H~DtVp 80 (395)
T TIGR03526 29 SGDEGRVALRIKQEMEKLGFDKVE---I-----------DPMG-NVLGYI-GHG----PKLIAMDAHIDTVG 80 (395)
T ss_pred CCchHHHHHHHHHHHHHcCCceEE---E-----------cCCC-cEEEEe-CCC----CCEEEEEeeccccC
Confidence 344678899999999999997321 1 1124 677764 532 23589999999875
No 126
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=57.13 E-value=26 Score=37.02 Aligned_cols=70 Identities=23% Similarity=0.209 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcC-CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEe
Q 011000 59 SIVGDLLDYLNES-WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (496)
Q Consensus 59 ~~a~~~~~Fl~~s-~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH 137 (496)
+..++++.|-.-+ ....-+.+++++.|++.||.... +...+.. .. .|+++...|... .+.+++.+|
T Consensus 17 ~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~----~~~~~~~-----~~-~n~~~~~~~~~~---~~~l~l~~H 83 (409)
T COG0624 17 ELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEE----DEVGPGP-----GR-PNLVARLGGGDG---GPTLLLGGH 83 (409)
T ss_pred HHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEE----eecCCCC-----Cc-eEEEEEecCCCC---CCeEEEecc
Confidence 4556666666666 55778999999999999998421 1112211 22 278877655431 146999999
Q ss_pred ccCC
Q 011000 138 TDSP 141 (496)
Q Consensus 138 ~Dsp 141 (496)
+|.+
T Consensus 84 ~DvV 87 (409)
T COG0624 84 LDVV 87 (409)
T ss_pred cccc
Confidence 9965
No 127
>PRK07907 hypothetical protein; Provisional
Probab=56.65 E-value=16 Score=39.31 Aligned_cols=43 Identities=26% Similarity=0.130 Sum_probs=31.6
Q ss_pred ccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 276 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 276 s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
=...|++.++.+.+.|+..+ .. . .+..+.++++..||.|+.|.
T Consensus 120 rG~~D~Kg~~aa~l~a~~~l-~~--~---~~~~i~~~~~~dEE~g~~g~ 162 (449)
T PRK07907 120 RGAADDKGGIAMHLAALRAL-GG--D---LPVGVTVFVEGEEEMGSPSL 162 (449)
T ss_pred CCccCCcHHHHHHHHHHHHh-cc--C---CCCcEEEEEEcCcccCCccH
Confidence 35589999999999998876 21 1 23346677889999998544
No 128
>PRK08554 peptidase; Reviewed
Probab=56.55 E-value=15 Score=39.58 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=30.9
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD 322 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ 322 (496)
...|+..++.+++.|+..+... . ......++++..||+|+.
T Consensus 100 G~~DmKgg~aa~l~A~~~l~~~--~---~~~~i~l~~~~dEE~g~~ 140 (438)
T PRK08554 100 GSADDKGNVASVMLALKELSKE--P---LNGKVIFAFTGDEEIGGA 140 (438)
T ss_pred CcccchHHHHHHHHHHHHHHhc--C---CCCCEEEEEEcccccCcc
Confidence 4589999999999888876432 1 234577889999999864
No 129
>PRK06156 hypothetical protein; Provisional
Probab=56.21 E-value=14 Score=40.81 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=31.4
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 011000 279 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 325 (496)
Q Consensus 279 LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~ 325 (496)
-|+..++.+++.|+..+... .. .....+.++|+..||+|+.|+.
T Consensus 153 ~D~Kgg~a~~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~G~~ 196 (520)
T PRK06156 153 EDDKGAIVTALYAMKAIKDS--GL-PLARRIELLVYTTEETDGDPLK 196 (520)
T ss_pred ccchHHHHHHHHHHHHHHHc--CC-CCCceEEEEEecccccCchhHH
Confidence 69999999998877665322 11 1234578889999999987644
No 130
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=55.01 E-value=20 Score=37.66 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=32.3
Q ss_pred CeeeccCC-CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 011000 272 EFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 321 (496)
Q Consensus 272 e~I~s~~L-DNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs 321 (496)
+.|.|++- |++.++.++|.|+..+...... ......+.++++..||+|+
T Consensus 94 g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~-~~~~~~i~~~~~~dEE~~~ 143 (373)
T TIGR01900 94 GILWGCGATDMKAGDAVMLHLAATLDGRAPE-TELKHDLTLIAYDCEEVAA 143 (373)
T ss_pred CEEEecCchhhhHHHHHHHHHHHHHhhhccc-cCCCCCEEEEEEecccccC
Confidence 34555555 9999999999888766310000 0123457788999999974
No 131
>PRK07079 hypothetical protein; Provisional
Probab=54.75 E-value=14 Score=40.08 Aligned_cols=48 Identities=21% Similarity=0.063 Sum_probs=32.3
Q ss_pred eccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 011000 275 FSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 324 (496)
Q Consensus 275 ~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga 324 (496)
.=...|++.++.+.+.|+..+.... .. .....++++++..||+|+.|.
T Consensus 122 GRGa~DmKgg~aa~l~A~~~l~~~~-~~-~~~~~i~~~~~~dEE~g~~G~ 169 (469)
T PRK07079 122 GRGTADNKGQHTINLAALEQVLAAR-GG-RLGFNVKLLIEMGEEIGSPGL 169 (469)
T ss_pred EEeccCCcHHHHHHHHHHHHHHHhc-CC-CCCCCEEEEEECccccCCccH
Confidence 3356899999998887776653210 00 123457889999999987543
No 132
>PRK08201 hypothetical protein; Provisional
Probab=53.45 E-value=17 Score=39.21 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=30.6
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccc
Q 011000 277 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 323 (496)
Q Consensus 277 ~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~g 323 (496)
+.-|++.++++.+.|+..+...... ......++++..||+|+.|
T Consensus 117 G~~DmKgglaa~l~a~~~l~~~~~~---~~~~i~~~~~~dEE~g~~g 160 (456)
T PRK08201 117 GASDDKGQVFMHLKAVEALLKVEGT---LPVNVKFCIEGEEEIGSPN 160 (456)
T ss_pred ecccCcHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEcccccCCcc
Confidence 3469999999998887666321101 2345778899999998754
No 133
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=53.33 E-value=40 Score=35.45 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCCc
Q 011000 72 WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (496)
Q Consensus 72 ~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dspg 142 (496)
..+..+++++.+.|++.||+... . +..+ |++|.. |.. .+.+++.+|+|.+-
T Consensus 30 ~~e~~~~~~l~~~l~~~G~~~~~---~-----------~~~~-n~~~~~-g~~----~~~l~l~~H~DtVp 80 (395)
T TIGR03320 30 GDEKRVAERIKEEMEKLGFDKVE---I-----------DPMG-NVLGYI-GHG----PKLIAMDAHIDTVG 80 (395)
T ss_pred CchHHHHHHHHHHHHHhCCcEEE---E-----------CCCC-CEEEEe-CCC----CcEEEEEecccccC
Confidence 34577899999999999997311 1 1124 677765 532 23589999999863
No 134
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=51.00 E-value=49 Score=28.43 Aligned_cols=51 Identities=20% Similarity=0.040 Sum_probs=38.0
Q ss_pred ccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccc
Q 011000 402 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMH 460 (496)
Q Consensus 402 ~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MH 460 (496)
+|+..+...+++.|+++|++++.... + .+.+-..-.+...+-+|..++|+-
T Consensus 11 aSSs~la~km~~~a~~~gi~~~i~a~------~--~~e~~~~~~~~Dvill~PQv~~~~ 61 (99)
T cd05565 11 GTSGLLANALNKGAKERGVPLEAAAG------A--YGSHYDMIPDYDLVILAPQMASYY 61 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEe------e--HHHHHHhccCCCEEEEcChHHHHH
Confidence 78999999999999999999987653 1 222222335677888888888864
No 135
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=48.96 E-value=14 Score=30.11 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHcCCCCCceeEEeee
Q 011000 233 HPQLMQILSQELGCGTDDIASIELN 257 (496)
Q Consensus 233 ~~~ll~~~a~~~gV~~gDiv~~dl~ 257 (496)
...-|+-+++.+.|+|||++.|+..
T Consensus 44 ~~~tL~~iC~~LeCqpgDiley~~d 68 (73)
T COG3655 44 RLSTLEKICKALECQPGDILEYVPD 68 (73)
T ss_pred eHHHHHHHHHHcCCChhheeEEecC
Confidence 3456777999999999999998754
No 136
>PLN02693 IAA-amino acid hydrolase
Probab=47.86 E-value=70 Score=34.55 Aligned_cols=79 Identities=13% Similarity=-0.055 Sum_probs=54.5
Q ss_pred ccCHHHHHHHHHHHHH-CCCCEeEEEeccCCCCCCChHHHHhcCCCCcEE--Eeccc-----ccccccHhhhcCHHHHHH
Q 011000 402 ATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTV--DCGIA-----QLSMHSVREICGTEDIDI 473 (496)
Q Consensus 402 ~t~~~~~~~l~~ia~~-~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~ti--diGiP-----~l~MHS~rE~~~~~Dv~~ 473 (496)
..|..+.+.+++.+++ .|.+..... ...+||+.+.+.+. .+|++ -+|+- .-.+||+.+.++-+-+..
T Consensus 334 ~nd~~l~~~~~~~~~~~~G~~~~~~~---~~~~gseDf~~~~~--~vP~~~~~lG~~~~~~~~~~~H~~~f~~de~~l~~ 408 (437)
T PLN02693 334 VNNMDLYKQFKKVVRDLLGQEAFVEA---APEMGSEDFSYFAE--TIPGHFSLLGMQDETNGYASSHSPLYRINEDVLPY 408 (437)
T ss_pred cCCHHHHHHHHHHHHHhcCCcceeec---CCCceechHHHHHH--HhhhhEEEEecCCCCCCCCCCCCCCcCCCHHHHHH
Confidence 3467788999999988 476532211 12357777666654 67876 55542 247899999999999988
Q ss_pred HHHHHHHHHhhc
Q 011000 474 AYRHFKAFYESF 485 (496)
Q Consensus 474 ~~~l~~af~~~~ 485 (496)
.++++..+..++
T Consensus 409 ~~~~~~~~~~~~ 420 (437)
T PLN02693 409 GAAIHATMAVQY 420 (437)
T ss_pred HHHHHHHHHHHH
Confidence 888887766554
No 137
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=46.49 E-value=23 Score=32.63 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCccccccccccccCCCeEEEeecC
Q 011000 77 ATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM 113 (496)
Q Consensus 77 ~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g 113 (496)
.+..+.+.|+++||+++.+.+.|.+++||=++..+.|
T Consensus 52 nT~tl~~~L~~~G~~~I~~~~~~~~q~GDI~I~g~~g 88 (145)
T PF05382_consen 52 NTETLHDWLKKNGFKKISENVDWNLQRGDIFIWGRRG 88 (145)
T ss_pred CHHHHHHHHhhCCcEEeccCCcccccCCCEEEEcCCC
Confidence 6788889999999999998877988888855544443
No 138
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=44.52 E-value=42 Score=35.21 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=26.0
Q ss_pred CCCChHHHHhcCCCCcEEEecccccc-cccHhhhc
Q 011000 433 CGSTIGPILASGVGIRTVDCGIAQLS-MHSVREIC 466 (496)
Q Consensus 433 gG~Tig~i~~s~~Gi~tidiGiP~l~-MHS~rE~~ 466 (496)
.|+|.+.++. ..|||++.+|.--.. +|++.|-+
T Consensus 339 ~g~tD~~~~~-~~gip~v~~Gpg~~~~aH~~dE~v 372 (373)
T TIGR01900 339 FGWTDVARFS-ALGIPALNFGAGDPLFAHKHDEQC 372 (373)
T ss_pred cCCccHHHHH-hcCCCEEEeCCCChhhccCCCCCC
Confidence 3667776665 479999999998764 89999976
No 139
>PRK08737 acetylornithine deacetylase; Provisional
Probab=42.26 E-value=28 Score=36.45 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=27.5
Q ss_pred eec-cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 011000 274 IFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 321 (496)
Q Consensus 274 I~s-~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs 321 (496)
|.| .+.|.+.++.+++.|+... .....++++..||+|+
T Consensus 95 lyGrGa~DmKg~~aa~l~a~~~~----------~~~v~~~~~~dEE~g~ 133 (364)
T PRK08737 95 VIGLGVCDIKGAAAALLAAANAG----------DGDAAFLFSSDEEAND 133 (364)
T ss_pred EEEECcccchHHHHHHHHHHHcc----------CCCEEEEEEcccccCc
Confidence 344 4466678888888887532 1247889999999987
No 140
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=39.61 E-value=38 Score=28.13 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEE
Q 011000 79 AEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAF 119 (496)
Q Consensus 79 ~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~ 119 (496)
..+++.|++.||+-......+++++.+-+.++-.++|+.++
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~ 51 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGI 51 (80)
T ss_pred hHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccc
Confidence 46889999999998876655557777877777777777654
No 141
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=35.89 E-value=3e+02 Score=28.03 Aligned_cols=120 Identities=11% Similarity=-0.073 Sum_probs=72.3
Q ss_pred hcccceEEEEecCCCCCCCC-CccccCCCCCcCCCCcEEEEcC-------CCCcccCHHHHHHHHHHHHHCCCCEeEEEe
Q 011000 356 TIRQSFLVSADMAHGVHPNF-SEKHEEHHRPEMQKGLVIKHNA-------NQRYATSGVTAFLFKEIAKLHNLPTQEFVV 427 (496)
Q Consensus 356 ~l~~S~~iS~DvahA~~Pn~-~~~~~~~~~~~LG~GpvIk~~~-------~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~ 427 (496)
..+++.+|.++.-|+. +| .+.. -+-.+|.|..+...+ .-.+-.|+.++..|.+.+.+.|++......
T Consensus 46 ~~~PDviVvi~sdH~~--~f~~d~~---p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~~~~~~~~ 120 (279)
T PRK13365 46 EQKADVLVFFYNDHCT--TFFFDLY---PTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEFDLTVFQD 120 (279)
T ss_pred HhCCCEEEEEcCchHH--HhccccC---CceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeccC
Confidence 3678888888777763 22 1110 012233333331110 013556999999999999999999875421
Q ss_pred ccCCCCCCChHHHHhcC-----CCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhcc
Q 011000 428 RNDMGCGSTIGPILASG-----VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFS 486 (496)
Q Consensus 428 r~D~~gG~Tig~i~~s~-----~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~ 486 (496)
+ .--=||.-|+...+ ..+|+|-|++.+.. ++ +.+.+..+.+-+.+..+.+++.
T Consensus 121 ~--~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~-~p---~~~~~~~~~lG~al~~~i~~~~ 178 (279)
T PRK13365 121 K--PIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQ-YP---LPTARRCYRLGQALRRAIESYP 178 (279)
T ss_pred C--CCCchhhhHHHHhCCccccCCCCeEEEEEeccc-CC---CCCHHHHHHHHHHHHHHHHhcC
Confidence 1 01235555543332 23889999987653 22 3356788888889999988763
No 142
>PLN02693 IAA-amino acid hydrolase
Probab=35.35 E-value=84 Score=33.94 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCC----ChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEE
Q 011000 61 VGDLLDYLNESW----TPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (496)
Q Consensus 61 a~~~~~Fl~~s~----T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~A 136 (496)
..++...|-+.| -++.+++++++.|++.||+... .. . +.+++|.. |+.. .+.+++-|
T Consensus 49 ~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~-------~~-------~-~~~via~~-g~~~---g~~i~l~~ 109 (437)
T PLN02693 49 MVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRY-------PV-------A-ITGIIGYI-GTGE---PPFVALRA 109 (437)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEe-------cC-------C-CcEEEEEE-CCCC---CCEEEEEe
Confidence 345666666666 5788999999999999998311 01 1 24788865 5321 23699999
Q ss_pred eccCCc
Q 011000 137 HTDSPC 142 (496)
Q Consensus 137 H~Dspg 142 (496)
|||.+-
T Consensus 110 h~DaVp 115 (437)
T PLN02693 110 DMDALP 115 (437)
T ss_pred ecCCCc
Confidence 999984
No 143
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=35.05 E-value=1.1e+02 Score=27.60 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCC
Q 011000 58 SSIVGDLLDYLNES---------WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVG 128 (496)
Q Consensus 58 ~~~a~~~~~Fl~~s---------~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~ 128 (496)
..+-+.+..-++.| ||.-.|+..++..+++-|+..+...+ +. .+-+-+|+.-|.++--.+..... +
T Consensus 22 ~~Lr~~L~~~~~~sd~~~lGIcA~s~~~ai~ALr~~~~alg~~~~~~~~-~~-~~~GpVfLK~N~~tg~~yv~~y~---G 96 (125)
T PF08854_consen 22 KKLRQALRLLASNSDWFTLGICAPSAEEAIAALRSYEQALGYPPLEPLD-SP-PIEGPVFLKANQKTGSCYVRSYT---G 96 (125)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEEESSHHHHHHHHHHHHHHTT--------------SSSEEEEEETTT--EEEEE-----S
T ss_pred HHHHHHHHHHHhccCceEEEeecCCHHHHHHHHHHHHHHcCCCccCCCC-CC-CCCCCEEEEecCCCCcEEEeecC---C
Confidence 34556666666665 89999999999999999999965444 21 22356888877655444432221 1
Q ss_pred CCe-eEEEEeccCCce
Q 011000 129 NGF-HIIAAHTDSPCL 143 (496)
Q Consensus 129 ~g~-~mi~AH~Dspgl 143 (496)
.+. |+|..|.|+..+
T Consensus 97 ~~rGVLiScqs~~~~~ 112 (125)
T PF08854_consen 97 LGRGVLISCQSDDDEG 112 (125)
T ss_dssp --BEEEEEEE-SSTTS
T ss_pred ccceEEEEeccCCccc
Confidence 223 999999998764
No 144
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=34.13 E-value=66 Score=32.38 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=41.6
Q ss_pred HHHHHHCCCCEeEEEeccCCCCCCChHHHHhcC-CCCcEEEecccccccccHhhhcCHHHHHHHHHHHHH
Q 011000 412 KEIAKLHNLPTQEFVVRNDMGCGSTIGPILASG-VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKA 480 (496)
Q Consensus 412 ~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~-~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~a 480 (496)
+.+.++.+|.+ .+.|+.-..||+...+.+++ +|||++.|.-|.+.-+ ..-..|++.+++.+..
T Consensus 190 ~al~~~~~i~~--lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~----~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 190 KALLREYRIDA--VVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPG----VAIFDDISQLNQFVAR 253 (256)
T ss_pred HHHHHHcCCCE--EEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCC----CccCCCHHHHHHHHHH
Confidence 66778888754 45565333367788887755 8999999999976222 2223566666666554
No 145
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=30.61 E-value=52 Score=27.96 Aligned_cols=23 Identities=39% Similarity=0.277 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEE
Q 011000 404 SGVTAFLFKEIAKLHNLPTQEFV 426 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~Ip~Q~~~ 426 (496)
.+.++..|.+.|+++|||+|...
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp 52 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDP 52 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCH
Confidence 45677999999999999999853
No 146
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=29.56 E-value=4.9e+02 Score=26.08 Aligned_cols=82 Identities=15% Similarity=-0.039 Sum_probs=52.5
Q ss_pred EEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhc--CCCCcEEEecccccccccHhhhcCHHH
Q 011000 393 IKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHSVREICGTED 470 (496)
Q Consensus 393 Ik~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s--~~Gi~tidiGiP~l~MHS~rE~~~~~D 470 (496)
+++... .|++++..|.+.++++||+......+.-.--=||.-|+... ...+|++.+++++. + .+.+.
T Consensus 79 ~~y~~~----g~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~------~~~~~ 147 (268)
T cd07371 79 LDYSIN----VDVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-Y------LSGEE 147 (268)
T ss_pred eeecCC----CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-C------CCHHH
Confidence 555544 49999999999999999998752111100123565565443 36789999988765 2 34555
Q ss_pred HHHHHHHHHHHHhhc
Q 011000 471 IDIAYRHFKAFYESF 485 (496)
Q Consensus 471 v~~~~~l~~af~~~~ 485 (496)
.+.+-+.+.+.+++.
T Consensus 148 ~~~lG~al~~~l~~~ 162 (268)
T cd07371 148 TEGEMDLAGKATRDA 162 (268)
T ss_pred HHHHHHHHHHHHHHc
Confidence 666666666565543
No 147
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=28.97 E-value=6.1e+02 Score=25.52 Aligned_cols=78 Identities=12% Similarity=-0.081 Sum_probs=49.1
Q ss_pred cccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhc--CCCCcEEEecccccccccHhhhcCHHHHHHHHHHH
Q 011000 401 YATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 478 (496)
Q Consensus 401 y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s--~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~ 478 (496)
+-.|+.++..|.+.++++||++.......-.--=||.-|+... ...+|+|-|++++- +. +.+..+.+-+.+
T Consensus 88 ~~g~~~LA~~i~~~l~~~Gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~-~~------~~~~~~~lG~ai 160 (272)
T cd07362 88 YPGDPELGRLLVEEGQEAGLRVKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWT-AA------SLEESYTWGEVI 160 (272)
T ss_pred CCCCHHHHHHHHHHHHHcCCceeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCC-CC------CHHHHHHHHHHH
Confidence 4459999999999999999998742210000113565555443 25699999998864 23 344555555556
Q ss_pred HHHHhhc
Q 011000 479 KAFYESF 485 (496)
Q Consensus 479 ~af~~~~ 485 (496)
...++.+
T Consensus 161 ~~al~~~ 167 (272)
T cd07362 161 GKALLES 167 (272)
T ss_pred HHHHHhh
Confidence 5666655
No 148
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=28.32 E-value=65 Score=34.69 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=40.6
Q ss_pred eccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccC-cccccccCC
Q 011000 275 FSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG-SDSYQGAGA 329 (496)
Q Consensus 275 ~s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVG-s~ga~gA~s 329 (496)
+=+++|++....+-|+|++.+..+.. .+..+..+.|-..|||| -.|+.+.+.
T Consensus 124 aRGaqD~K~~~va~leAir~L~~~g~---kp~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 124 ARGAQDMKCVGVAYLEAIRNLKASGF---KPKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred eccccchHhHHHHHHHHHHHHHhcCC---CcCceEEEEecCchhccCcchHHHHhh
Confidence 34679999999999999998864421 24567888899999998 778777776
No 149
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=28.06 E-value=63 Score=34.33 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=25.1
Q ss_pred eEEEEecCCCCCCCCCcc-ccCCCCCcCCCCcEEEEc
Q 011000 361 FLVSADMAHGVHPNFSEK-HEEHHRPEMQKGLVIKHN 396 (496)
Q Consensus 361 ~~iS~DvahA~~Pn~~~~-~~~~~~~~LG~GpvIk~~ 396 (496)
++|-+| |+.||.|+.. |-..+-|.|..||.+|-.
T Consensus 328 LiiTAD--HGnDPT~~gTdHTRE~iPvl~y~~~~k~~ 362 (397)
T COG1015 328 LIITAD--HGNDPTWGGTDHTREYIPVLVYGPGLKPG 362 (397)
T ss_pred EEEecC--CCCCCCCCCCCccccccceEEEcCCccCC
Confidence 457777 9999999874 334556888888888754
No 150
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=27.52 E-value=76 Score=29.89 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCcc
Q 011000 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFEL 92 (496)
Q Consensus 58 ~~~a~~~~~Fl~~s~T~~h~v~~~~~~L~~~GF~~ 92 (496)
.+.|++|++||.. .++++.|++.||..
T Consensus 158 ~~~A~~F~~fl~s--------~eaq~i~~~~Gf~~ 184 (188)
T PRK03537 158 SPQAKRLADFLLS--------PKGQAILAQYGFSP 184 (188)
T ss_pred hHHHHHHHHHHhC--------HHHHHHHHHcCCCC
Confidence 3789999999954 57899999999975
No 151
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=27.22 E-value=70 Score=37.45 Aligned_cols=51 Identities=20% Similarity=0.015 Sum_probs=38.4
Q ss_pred ccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCC
Q 011000 276 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGA 329 (496)
Q Consensus 276 s~~LDNr~~~~~~leal~~~~~~~~~l~~~~~~~~~v~~dqEEVGs~ga~gA~s 329 (496)
.++=||-.||.++||+|+-....+..+ .+.+++.|.+.||-++.|+.|=-.
T Consensus 159 ~gAtDDg~~va~mLe~lRv~s~~~~~l---~~~vVFLfNgaEE~~L~gsH~FIt 209 (834)
T KOG2194|consen 159 PGATDDGSGVASMLEALRVLSKSDKLL---THSVVFLFNGAEESGLLGSHAFIT 209 (834)
T ss_pred CCCCcchhHHHHHHHHHHHhhcCCCcc---cccEEEEecCcccchhhhccccee
Confidence 456699999999999988765432122 456889999999999988776543
No 152
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=26.38 E-value=3.5e+02 Score=27.47 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=51.9
Q ss_pred cccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHh--cCCCCcEEEecccccccccHhhhcCHHHHHHHHHHH
Q 011000 401 YATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILA--SGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 478 (496)
Q Consensus 401 y~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~--s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~ 478 (496)
+-.|+.++..|.+.+++.||+...-....-.--=||.-|+.. -...+|+|-|++++. ++ +..+.+.+-+.+
T Consensus 92 ~~gd~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~-~~------~~~~~~~lG~al 164 (282)
T TIGR02298 92 YPGNPALGQLIADEAQEHGVKTLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCT-VH------DIEESRALGEAI 164 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCceeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCC-CC------CHHHHHHHHHHH
Confidence 445999999999999999999863111100011256555433 336799999999855 23 455667788888
Q ss_pred HHHHhhc
Q 011000 479 KAFYESF 485 (496)
Q Consensus 479 ~af~~~~ 485 (496)
..++++.
T Consensus 165 ~~~i~~~ 171 (282)
T TIGR02298 165 RKAIEQS 171 (282)
T ss_pred HHHHHhc
Confidence 8887664
No 153
>PRK10602 murein peptide amidase A; Provisional
Probab=25.99 E-value=4.7e+02 Score=26.01 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHh
Q 011000 404 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 483 (496)
Q Consensus 404 ~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~ 483 (496)
++...++.+.+|+..+.|+=... ..+.+|+.+.... ..|||++.+=.|. +.+.++++...+-+..+++
T Consensus 165 ~~~~~~~~~~la~af~~~~~~~~---~y~~~Gs~~~~a~-~~giP~it~El~~--------~~~~~~v~~~~~~~~~~l~ 232 (237)
T PRK10602 165 DPRHSELGEWLAQAFELPLVTSV---GYETPGSFGSWCA-DLNLHCITAELPP--------ISADEASEKYLFAMANLLR 232 (237)
T ss_pred CccchHHHHHHHHHhCCCeEeec---CCCCCCcHHHHHH-HcCCcEEEEecCC--------cCcHHHHHHHHHHHHHHHh
Confidence 34445667788888888754332 2233455544433 4899999998885 6677777777777777766
Q ss_pred hc
Q 011000 484 SF 485 (496)
Q Consensus 484 ~~ 485 (496)
..
T Consensus 233 ~~ 234 (237)
T PRK10602 233 WH 234 (237)
T ss_pred cc
Confidence 54
No 154
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=25.05 E-value=70 Score=37.41 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=22.0
Q ss_pred CcccCHHH----HHHHHHHHHHCCCCEeEEEec
Q 011000 400 RYATSGVT----AFLFKEIAKLHNLPTQEFVVR 428 (496)
Q Consensus 400 ~y~t~~~~----~~~l~~ia~~~~Ip~Q~~~~r 428 (496)
.|.+.... ...|.++|+++||.++.|..|
T Consensus 573 G~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGR 605 (910)
T COG2352 573 GYLAANWALYKAQLALVELCEKAGVELRLFHGR 605 (910)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhCceEEEEccC
Confidence 36555433 356899999999999999965
No 155
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=24.35 E-value=1.5e+02 Score=24.62 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCC
Q 011000 76 HATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQ 123 (496)
Q Consensus 76 h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~ 123 (496)
..++.+.++|+++|-+...+...|. ...-|+.|..| +.+-+..|.
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~DP~G-n~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAPPGAD--PDGVWFRDPDG-NLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHHHHcCCceecCCCcCC--CCEEEEECCCC-CEEEEecCC
Confidence 4578899999999998665433332 12357778888 888887664
No 156
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=23.75 E-value=8e+02 Score=25.13 Aligned_cols=83 Identities=12% Similarity=-0.047 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHHHHHHCCCCEeEEEeccCCCCCCChHHHHhcC--CCCcEEEeccccccc-ccHhhhcCHHHHHHHHHHH
Q 011000 402 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASG--VGIRTVDCGIAQLSM-HSVREICGTEDIDIAYRHF 478 (496)
Q Consensus 402 ~t~~~~~~~l~~ia~~~~Ip~Q~~~~r~D~~gG~Tig~i~~s~--~Gi~tidiGiP~l~M-HS~rE~~~~~Dv~~~~~l~ 478 (496)
-.|+.++..|.+.++++||+........-.--=||.-|+..-+ ..+|+|.|+++.+.- +..+ -...+.+.+-+.+
T Consensus 95 ~gd~eLA~~i~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~--~~~~~~~~lG~ai 172 (294)
T cd07372 95 NVDVELAEACCEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTK--EGLGEMDVLGKAT 172 (294)
T ss_pred CCCHHHHHHHHHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCccccccccc--CCHHHHHHHHHHH
Confidence 4699999999999999999997521111001236666654432 569999999865431 1111 3356667777777
Q ss_pred HHHHhhcc
Q 011000 479 KAFYESFS 486 (496)
Q Consensus 479 ~af~~~~~ 486 (496)
...+++.+
T Consensus 173 ~~al~~~~ 180 (294)
T cd07372 173 REAIRKTG 180 (294)
T ss_pred HHHHHhcC
Confidence 77776653
No 157
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=23.03 E-value=3.8e+02 Score=27.19 Aligned_cols=121 Identities=10% Similarity=0.000 Sum_probs=69.8
Q ss_pred hhcccceEEEEecCCCCCCCC-CccccCCCCCcCCCCcEEEEcCC-------CCcccCHHHHHHHHHHHHHCCCCEeEEE
Q 011000 355 CTIRQSFLVSADMAHGVHPNF-SEKHEEHHRPEMQKGLVIKHNAN-------QRYATSGVTAFLFKEIAKLHNLPTQEFV 426 (496)
Q Consensus 355 ~~l~~S~~iS~DvahA~~Pn~-~~~~~~~~~~~LG~GpvIk~~~~-------~~y~t~~~~~~~l~~ia~~~~Ip~Q~~~ 426 (496)
+..+++.+|.++.-|+.. | .+. .-.-.+|.|..+...+. ..+..|+.++..|.+.+.+.|++.....
T Consensus 45 ~~~~PD~iVvi~~dH~~~--f~~d~---~p~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~ 119 (277)
T cd07950 45 AEQKPDVLFMVYNDHVTS--FFFDH---YSAFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEFDLTFFQ 119 (277)
T ss_pred HHhCCCEEEEEcCcHHHH--hcccc---CCcEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCCCeeecc
Confidence 336778887777556532 2 110 00122333333322111 2355699999999999999999987533
Q ss_pred eccCCCCCCChHHHHhcC-----CCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhcc
Q 011000 427 VRNDMGCGSTIGPILASG-----VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFS 486 (496)
Q Consensus 427 ~r~D~~gG~Tig~i~~s~-----~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~ 486 (496)
.+ .--=||.-|+..-+ ..+|+|-|.+|+... | +-+.+..+.+-+.+..+++++.
T Consensus 120 ~~--~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~-~---l~~~~~~~~lG~al~~~i~~~~ 178 (277)
T cd07950 120 DK--PLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQF-P---LPTARRCYKLGQALRRAIESYP 178 (277)
T ss_pred CC--CCCceeeeeHHHhCcccccCCCceEEEEEEeEec-C---CCCHHHHHHHHHHHHHHHHhcC
Confidence 21 01124433433222 236789898887632 2 1256777888888888888763
No 158
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=22.02 E-value=81 Score=31.82 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCCh-HHHHhcCCCCcEEEecccccccccHhhhcCHHHHHHHHHHHHHHHhhccc
Q 011000 434 GSTI-GPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 487 (496)
Q Consensus 434 G~Ti-g~i~~s~~Gi~tidiGiP~l~MHS~rE~~~~~Dv~~~~~l~~af~~~~~~ 487 (496)
.||+ |.+.+.-.|||+|.++.-.++-+--+. .|++.+.++..++++.+-.
T Consensus 104 SGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~----~~~e~A~~~~~~lv~~l~~ 154 (252)
T COG0496 104 SGTVAAAMEAALLGIPAIAISLAYREAFGKQD----VDFETAAKVARALVEALLA 154 (252)
T ss_pred eehHHHHHHHHHcCccceeeeehhcccccccc----ccHHHHHHHHHHHHHHHHh
Confidence 4885 578888899999999987776554333 5788888888887776544
No 159
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=21.94 E-value=92 Score=32.27 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=36.5
Q ss_pred CCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCeeEEEEeccCC
Q 011000 71 SWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (496)
Q Consensus 71 s~T~~h~v~~~~~~L~~~GF~~l~e~~~w~l~~g~k~~~~r~g~~liA~~~G~~~~~~~g~~mi~AH~Dsp 141 (496)
|.-+..+++++.+.|++.||+.- .| .+ ..+ |++|...|+.+ .+.+++.+|+|-+
T Consensus 15 s~~E~~~a~~l~~~l~~~g~~~~----~~--~~-------~~~-~vva~~~~~~~---~~~i~l~gH~DtV 68 (363)
T TIGR01891 15 SFEEFKTSSLIAEALESLGIEVR----RG--VG-------GAT-GVVATIGGGKP---GPVVALRADMDAL 68 (363)
T ss_pred CCchHHHHHHHHHHHHHcCCceE----ec--CC-------CCc-EEEEEEeCCCC---CCEEEEEeccCCC
Confidence 33457899999999999999731 11 11 123 78887544321 2469999999987
Done!