BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011001
(496 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6EV70|OFUT1_RAT GDP-fucose protein O-fucosyltransferase 1 OS=Rattus norvegicus
GN=Pofut1 PE=2 SV=1
Length = 395
Score = 36.2 bits (82), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 77 FFLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVLD--HH 116
+ LY P G F NQ F ++ A +LNRTL VPP ++ HH
Sbjct: 41 YLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHH 83
>sp|Q91ZW2|OFUT1_MOUSE GDP-fucose protein O-fucosyltransferase 1 OS=Mus musculus GN=Pofut1
PE=1 SV=1
Length = 393
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 77 FFLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVLD--HH 116
+ LY P G F NQ F ++ A +LNRTL VPP ++ HH
Sbjct: 39 YLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHH 81
>sp|Q6EV69|OFUT1_PANTR GDP-fucose protein O-fucosyltransferase 1 OS=Pan troglodytes
GN=POFUT1 PE=2 SV=1
Length = 388
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 77 FFLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVLD--HH 116
+ LY P G F NQ F ++ A +LNRTL VPP ++ HH
Sbjct: 34 YLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHH 76
>sp|Q9H488|OFUT1_HUMAN GDP-fucose protein O-fucosyltransferase 1 OS=Homo sapiens GN=POFUT1
PE=1 SV=1
Length = 388
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 77 FFLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVLD--HH 116
+ LY P G F NQ F ++ A +LNRTL VPP ++ HH
Sbjct: 34 YLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHH 76
>sp|P83337|OFUT1_CRIGR GDP-fucose protein O-fucosyltransferase 1 OS=Cricetulus griseus
GN=POFUT1 PE=1 SV=2
Length = 392
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 77 FFLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVLD--HH 116
+ LY P G F NQ F ++ A +LNRTL VPP ++ HH
Sbjct: 38 YLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHH 80
>sp|Q9NDG8|ACE4_CAEBR Acetylcholinesterase 4 OS=Caenorhabditis briggsae GN=ace-4 PE=2
SV=1
Length = 604
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 91 GEFKNAILMAGILNRTLIVPPVL-----DHHAVALGSCPK---------FRVQSPNQMRI 136
G FKNAIL +G L T + + L C K R+ SP Q+ +
Sbjct: 236 GLFKNAILQSGSLENTWAINSPFRAKQKSEKLLELVGCNKTTVENSMSCLRLVSPEQLSL 295
Query: 137 SVWHHAIELLRSGRYVSMADIIDISSLVSSSMVKVLDFRRFASLWCGLDVDLACLISLNT 196
S W+ ++ L + D L + + ++ DF R +L G++ D ++
Sbjct: 296 STWNISLTYLEFPFVIVSRDKHFFGHLDARAALREGDFNRDVNLMIGMNKDEGNYWNIYQ 355
Query: 197 QPSLLDR 203
P D+
Sbjct: 356 LPQFFDK 362
>sp|Q9V6X7|OFUT1_DROME GDP-fucose protein O-fucosyltransferase 1 OS=Drosophila
melanogaster GN=O-fut1 PE=1 SV=1
Length = 402
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 77 FFLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVLDHHAVALGSCPKFRVQSPNQMR 135
+ Y P G F NQ F ++ A LNRTLI+PP +++ L S Q+
Sbjct: 32 YLTYCPCMGRFGNQADHFLGSLAFAKALNRTLILPPWVEYRRGELRS---------RQVP 82
Query: 136 ISVWHHAIELLRSGRYVSMADII 158
+ + L R ++MAD +
Sbjct: 83 FNTYFEVEPLKEYHRVITMADFM 105
>sp|Q053E2|MTNA_LEPBL Methylthioribose-1-phosphate isomerase OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain L550) GN=mtnA PE=3 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 364 TFLRLKEKLDSLRQKGPQPINIFVMTD-----LPVTNWTGNYLGDLAKDTDSFKLYFLRK 418
TF +LK KLD L + P +N+ ++ + P +++ L + K + F L+ L +
Sbjct: 74 TFSQLKTKLDELLESRPTAVNLRLVIEEFFSRFPEADYSSANLEKMQKSAEEFALFMLEE 133
Query: 419 EDE---LLAQTA-------------------QKLATAGHGLRYGV 441
+ E L++ A LATAGHG GV
Sbjct: 134 DLENNLTLSKNALSLFPKSPSSLNIITHCNTGALATAGHGTALGV 178
>sp|Q04RD6|MTNA_LEPBJ Methylthioribose-1-phosphate isomerase OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain JB197) GN=mtnA PE=3 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 364 TFLRLKEKLDSLRQKGPQPINIFVMTD-----LPVTNWTGNYLGDLAKDTDSFKLYFLRK 418
TF +LK KLD L + P +N+ ++ + P +++ L + K + F L+ L +
Sbjct: 74 TFSQLKTKLDELLESRPTAVNLRLVIEEFFSRFPEADYSSANLEKMQKSAEEFALFMLEE 133
Query: 419 EDE---LLAQTA-------------------QKLATAGHGLRYGV 441
+ E L++ A LATAGHG GV
Sbjct: 134 DLENNLTLSKNALSLFPKSPSSLNIITHCNTGALATAGHGTALGV 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,384,556
Number of Sequences: 539616
Number of extensions: 7304348
Number of successful extensions: 14996
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 14993
Number of HSP's gapped (non-prelim): 10
length of query: 496
length of database: 191,569,459
effective HSP length: 122
effective length of query: 374
effective length of database: 125,736,307
effective search space: 47025378818
effective search space used: 47025378818
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)