Query 011001
Match_columns 496
No_of_seqs 61 out of 63
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3849 GDP-fucose protein O-f 99.9 9.9E-28 2.1E-32 237.5 14.0 265 73-421 27-335 (386)
2 PF10250 O-FucT: GDP-fucose pr 99.9 4E-27 8.6E-32 225.9 3.7 74 78-158 1-76 (351)
3 PF05830 NodZ: Nodulation prot 96.5 0.065 1.4E-06 55.4 14.5 81 310-392 135-224 (321)
4 PF03254 XG_FTase: Xyloglucan 89.7 0.33 7.1E-06 52.6 3.9 38 74-111 110-147 (476)
5 PF01531 Glyco_transf_11: Glyc 56.2 19 0.00041 35.9 4.9 57 342-403 162-225 (298)
6 COG0856 Orotate phosphoribosyl 41.9 17 0.00036 36.1 1.9 26 466-491 144-169 (203)
7 COG1040 ComFC Predicted amidop 37.1 20 0.00042 35.1 1.6 20 472-491 193-212 (225)
8 TIGR00201 comF comF family pro 36.2 21 0.00045 33.3 1.6 20 472-491 161-180 (190)
9 PF13768 VWA_3: von Willebrand 33.2 1.1E+02 0.0023 26.7 5.4 128 266-437 24-152 (155)
10 KOG2097 Predicted N6-adenine m 26.6 19 0.00041 38.2 -0.4 41 137-185 171-214 (397)
11 PF07172 GRP: Glycine rich pro 26.2 51 0.0011 28.9 2.2 19 24-42 3-21 (95)
12 PF12967 DUF3855: Domain of Un 25.5 47 0.001 31.4 1.9 45 387-431 73-137 (158)
13 PF12404 DUF3663: Peptidase ; 24.7 1.1E+02 0.0024 26.5 3.9 46 384-432 2-49 (77)
14 cd01770 p47_UBX p47-like ubiqu 24.2 1E+02 0.0022 25.7 3.5 55 342-397 1-58 (79)
15 smart00166 UBX Domain present 23.6 1.2E+02 0.0025 24.7 3.7 56 343-400 2-60 (80)
16 PF07315 DUF1462: Protein of u 22.1 59 0.0013 29.1 1.8 23 299-321 40-62 (93)
17 cd01461 vWA_interalpha_trypsin 20.6 2.3E+02 0.005 24.5 5.2 75 363-439 81-157 (171)
No 1
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.9e-28 Score=237.50 Aligned_cols=265 Identities=23% Similarity=0.363 Sum_probs=169.1
Q ss_pred CCCceEEEecCCC-CcchHHHHHHHHHHHHHhcceeecCcccccccccCCCCCCccccccccccccccccHHHHhhccce
Q 011001 73 PDKKFFLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVLDHHAVALGSCPKFRVQSPNQMRISVWHHAIELLRSGRY 151 (496)
Q Consensus 73 ~~ekyl~Y~PhsG-F~NQ~~~f~nAl~lAk~LNRTLivPp~~~hha~p~~s~pK~Rv~~~~~vr~~~~~~v~ell~~~Ry 151 (496)
.+++||+|||||| |+||++||+++|+|||+|||||||||||.... | ++.+ .+|++..||+++++.+|+|+
T Consensus 27 DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~-p--e~~n------~~vpf~~yF~vepl~~YhRV 97 (386)
T KOG3849|consen 27 DPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKH-P--ETKN------LMVPFEFYFQVEPLAKYHRV 97 (386)
T ss_pred CCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccC-C--cccc------cccchhheeecccHhhhhhh
Confidence 4899999999999 99999999999999999999999999994433 1 2234 69999999999999999999
Q ss_pred eehhhhhcccccccCCcccccccccchhhhccccchhhhhcccCCCcchhhhHHHhhhhhcCCCCCCCC------ceEEe
Q 011001 152 VSMADIIDISSLVSSSMVKVLDFRRFASLWCGLDVDLACLISLNTQPSLLDRLRQCVSMLSGLNGNVDG------CFFAV 225 (496)
Q Consensus 152 Vsm~dfmDls~ia~~~~V~pId~R~f~S~Wcgv~~~~~c~~~l~~~~~~~~~~~~c~slL~~~~g~~~~------cvY~V 225 (496)
|+|+||| +.|+|+ +||...|+. .|..+- .|-+ .+-..|-+- .||.=| .|-+|
T Consensus 98 itm~dFm--~klapt--hwp~~~Rva-----------~c~k~a-~qr~--pdkp~Ch~K----eGNPFGPfWDqfhvsFv 155 (386)
T KOG3849|consen 98 ITMQDFM--KKLAPT--HWPGTPRVA-----------ICDKSA-AQRS--PDKPGCHSK----EGNPFGPFWDQFHVSFV 155 (386)
T ss_pred eeHHHHH--HHhCcc--cCCCCccee-----------eeehhh-hccC--CCCCCCccc----CCCCCCCchhheEeeee
Confidence 9999999 999999 999999975 233321 1111 111223221 122211 12222
Q ss_pred cccCccceeeccCCCCCCCCCCCCchHHhhhhhhhhHHHHHHHHHHhhCCCCccCcceEEEeeccccccccCceeeeecc
Q 011001 226 DDDCRTTVWTYQSGDEDGVLDPFQPDEQLKKKKKVSYVRRRRDVYKALGSGSKADSATILAFGTLFTAPYKGSQLYIDIN 305 (496)
Q Consensus 226 ~ddcrtTvwtYq~~~~d~~LdsFq~de~Lk~~Kkisyvrrrrdvyk~lG~gs~a~~a~lLaFGSLFs~~YkGse~~idi~ 305 (496)
.+. . =+.+ .|.. .++. .|..-.+-+ .+|+.-||||-+-= +||-. .
T Consensus 156 ~sE----~--------f~~i-~Fd~-~~~~---------~~~kW~~kf----p~eeyPVLAf~gAP-A~FPv-------~ 200 (386)
T KOG3849|consen 156 GSE----Y--------FGDI-GFDL-NQMG---------SRKKWLEKF----PSEEYPVLAFSGAP-APFPV-------K 200 (386)
T ss_pred ccc----c--------cccc-ccch-hhcc---------hHHHHHhhC----CcccCceeeecCCC-CCCcc-------c
Confidence 221 0 0111 2211 1111 122222222 35999999997543 33331 1
Q ss_pred cCcchHHHHHHHHhcccccchHHHHHhhHHHHHHhcCCCeeEEEEeec-----------ch--h----------hhhhHH
Q 011001 306 AAPRDQRIQSLIENIEFIPFVPEILSAGKKYAFETIKAPFLCAQLRLL-----------DG--Q----------FKNHWK 362 (496)
Q Consensus 306 ~s~~d~~~~sl~~~~~~lpf~p~i~~agk~~a~~~ik~pFlcaqLRll-----------DG--q----------FKnH~~ 362 (496)
+.. -.+|. .|.++-++..+||+||+..+..||+++|||-+ || + .++|-.
T Consensus 201 ~e~--~~lQk------Yl~WS~r~~e~~k~fI~a~L~rpfvgiHLRng~DWvraCehikd~~~~hlfASpQClGy~~~~g 272 (386)
T KOG3849|consen 201 GEV--WSLQK------YLRWSSRITEQAKKFISANLARPFVGIHLRNGADWVRACEHIKDTTNRHLFASPQCLGYGHHLG 272 (386)
T ss_pred ccc--ccHHH------HHHHHHHHHHHHHHHHHHhcCcceeEEEeecCchHHHHHHHhcccCCCccccChhhcccccccc
Confidence 111 12333 35566789999999999999999999999965 21 1 122221
Q ss_pred ------------HHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCccccccccccc--CCCceEEEEeccccH
Q 011001 363 ------------ATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNYLGDLAK--DTDSFKLYFLRKEDE 421 (496)
Q Consensus 363 ------------~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~tyl~dl~~--~~~~ykl~~l~e~d~ 421 (496)
+-...+|+++.+++ ..-++||.|| ...|.++|-. ..-.-++|.|+++|.
T Consensus 273 aLt~e~C~Psk~~I~rqik~~v~si~----dakSVfVAsD------s~hmi~Eln~aL~~~~i~vh~l~pdd~ 335 (386)
T KOG3849|consen 273 ALTKEICSPSKQQILRQIKEKVGSIG----DAKSVFVASD------SDHMIDELNEALKPYEIEVHRLEPDDM 335 (386)
T ss_pred ccchhhhCccHHHHHHHHHHHHhhhc----ccceEEEecc------chhhhHHHHHhhcccceeEEecCcccc
Confidence 22334555555443 3557999999 3467666642 233567899999874
No 2
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.93 E-value=4e-27 Score=225.86 Aligned_cols=74 Identities=30% Similarity=0.510 Sum_probs=52.7
Q ss_pred EEEecCCC-CcchHHHHHHHHHHHHHhcceeecCcccccccccCCCCCCccccccccccccccccHHHHhhcc-ceeehh
Q 011001 78 FLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVLDHHAVALGSCPKFRVQSPNQMRISVWHHAIELLRSG-RYVSMA 155 (496)
Q Consensus 78 l~Y~PhsG-F~NQ~~~f~nAl~lAk~LNRTLivPp~~~hha~p~~s~pK~Rv~~~~~vr~~~~~~v~ell~~~-RyVsm~ 155 (496)
|.|+|++| |+||+++|+||+++|++|||||||||+..|. .|.+-.+ -.+++++.+|.+..+.++. ++|+|+
T Consensus 1 ~~y~p~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~--~~~~~~~-----~~~ipf~~~fD~~~l~~~~~~vi~~~ 73 (351)
T PF10250_consen 1 LVYDPCMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHY--HWKDQSK-----QRHIPFSDFFDVEHLRKFLRPVITME 73 (351)
T ss_dssp EEE---SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEES--SSS---------EEEEEHHHHB-HHHHTTTS--EE-HH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccc--ccccccc-----ccccChhhhccHHHHHHHhhCceehh
Confidence 68999977 9999999999999999999999999999752 2321111 2578888889999999999 889999
Q ss_pred hhh
Q 011001 156 DII 158 (496)
Q Consensus 156 dfm 158 (496)
+++
T Consensus 74 ef~ 76 (351)
T PF10250_consen 74 EFL 76 (351)
T ss_dssp HHH
T ss_pred eec
Confidence 998
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=96.55 E-value=0.065 Score=55.43 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=48.3
Q ss_pred hHHHHHHHHhcccccchHHHHHhhHHHHHHhcCC-CeeEEEEeecchhh----hhhHH---HHHHHHHHHHHHhh-hcCC
Q 011001 310 DQRIQSLIENIEFIPFVPEILSAGKKYAFETIKA-PFLCAQLRLLDGQF----KNHWK---ATFLRLKEKLDSLR-QKGP 380 (496)
Q Consensus 310 d~~~~sl~~~~~~lpf~p~i~~agk~~a~~~ik~-pFlcaqLRllDGqF----KnH~~---~Tf~~lk~kLesl~-~~~~ 380 (496)
|+.+.+.|- +.+--.|+|.+....+.++.+++ +-.|+|+|-|+|+= ..+|. .++..++..++.++ +..+
T Consensus 135 ~~~aeR~if--~slkpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~ 212 (321)
T PF05830_consen 135 DEEAEREIF--SSLKPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALAPP 212 (321)
T ss_dssp -HHHHHHHH--HHS-B-HHHHHHHHHHHHHHTTTSEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS--S
T ss_pred hhHHHHHHH--HhCCCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhccCC
Confidence 466667666 33667899999999999998865 59999999998842 24454 45666666666664 4455
Q ss_pred CceeEEEecCCC
Q 011001 381 QPINIFVMTDLP 392 (496)
Q Consensus 381 ~pi~iFvMTDLp 392 (496)
.|+.|||.||=+
T Consensus 213 k~~~IFLATDSa 224 (321)
T PF05830_consen 213 KPVRIFLATDSA 224 (321)
T ss_dssp S-EEEEEEES-H
T ss_pred CCeeEEEecCcH
Confidence 799999999954
No 4
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=89.70 E-value=0.33 Score=52.64 Aligned_cols=38 Identities=34% Similarity=0.603 Sum_probs=36.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHHHHHHHhcceeecCc
Q 011001 74 DKKFFLYAPHSGFSNQLGEFKNAILMAGILNRTLIVPP 111 (496)
Q Consensus 74 ~ekyl~Y~PhsGF~NQ~~~f~nAl~lAk~LNRTLivPp 111 (496)
+=|||.|.|.+|.||++..+--|++-|-+.||.|+|.+
T Consensus 110 ~CkYvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~ 147 (476)
T PF03254_consen 110 ECKYVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDP 147 (476)
T ss_pred CCcEEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 55999999999999999999999999999999999976
No 5
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=56.18 E-value=19 Score=35.92 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=40.0
Q ss_pred CCCeeEEEEeecchhhhh-------hHHHHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCcccccccc
Q 011001 342 KAPFLCAQLRLLDGQFKN-------HWKATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNYLGD 403 (496)
Q Consensus 342 k~pFlcaqLRllDGqFKn-------H~~~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~tyl~d 403 (496)
...++|+|+|-|| |.. |...+.+-.++.++-++.+-+.| .+||.+| .-+|.+..+..
T Consensus 162 ~~~~V~VHIRRGD--y~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~~~~~-~f~ifSD--D~~w~k~~l~~ 225 (298)
T PF01531_consen 162 NSNSVCVHIRRGD--YVSNGNHNWKHGICDKDYYKKAIEYIREKVKNP-KFFIFSD--DIEWCKENLKF 225 (298)
T ss_pred CCCeEEEEEEchh--ccccccccccCCCCCHHHHHHHHHHHHHhCCCC-EEEEEcC--CHHHHHHHHhh
Confidence 3579999999998 432 33456677888888887666555 4677777 33588776654
No 6
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=41.91 E-value=17 Score=36.07 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=22.1
Q ss_pred ccccccccCCCchhHHHHHHHHhccc
Q 011001 466 CATVGFVGTAGSTLAESIELMRKFDV 491 (496)
Q Consensus 466 CAslGFvGT~GSTia~~ie~mRk~~~ 491 (496)
|.-.-=|-|+||||.|-||++|+.+.
T Consensus 144 cvIVDDvittG~Ti~E~Ie~lke~g~ 169 (203)
T COG0856 144 CVIVDDVITTGSTIKETIEQLKEEGG 169 (203)
T ss_pred EEEEecccccChhHHHHHHHHHHcCC
Confidence 55566678999999999999999874
No 7
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=37.14 E-value=20 Score=35.08 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.6
Q ss_pred ccCCCchhHHHHHHHHhccc
Q 011001 472 VGTAGSTLAESIELMRKFDV 491 (496)
Q Consensus 472 vGT~GSTia~~ie~mRk~~~ 491 (496)
|-|+|+|+.+.-+.||+.|+
T Consensus 193 V~TTGaTl~~~~~~L~~~Ga 212 (225)
T COG1040 193 VYTTGATLKEAAKLLREAGA 212 (225)
T ss_pred ccccHHHHHHHHHHHHHcCC
Confidence 67999999999999999985
No 8
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=36.21 E-value=21 Score=33.32 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.1
Q ss_pred ccCCCchhHHHHHHHHhccc
Q 011001 472 VGTAGSTLAESIELMRKFDV 491 (496)
Q Consensus 472 vGT~GSTia~~ie~mRk~~~ 491 (496)
|-|+|+|+.+..+.+++.|+
T Consensus 161 V~TTGaTl~~~~~~L~~~Ga 180 (190)
T TIGR00201 161 VVTTGATLHEIARLLLELGA 180 (190)
T ss_pred eeccHHHHHHHHHHHHHcCC
Confidence 56999999999999999875
No 9
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=33.18 E-value=1.1e+02 Score=26.67 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=75.7
Q ss_pred HHHHHHhhCCCCccCcceEEEeeccccccccCceeeeecccCcchHHHHHHHHhcccccchHHHHHhhHHHHHHhcCCCe
Q 011001 266 RRDVYKALGSGSKADSATILAFGTLFTAPYKGSQLYIDINAAPRDQRIQSLIENIEFIPFVPEILSAGKKYAFETIKAPF 345 (496)
Q Consensus 266 rrdvyk~lG~gs~a~~a~lLaFGSLFs~~YkGse~~idi~~s~~d~~~~sl~~~~~~lpf~p~i~~agk~~a~~~ik~pF 345 (496)
-+-+.++|++|. ..+|++||+-... +. + ...|..++-+..+.+++++ +.++
T Consensus 24 l~~~l~~L~~~d---~fnii~f~~~~~~-~~-----------~------------~~~~~~~~~~~~a~~~I~~-~~~~- 74 (155)
T PF13768_consen 24 LRAILRSLPPGD---RFNIIAFGSSVRP-LF-----------P------------GLVPATEENRQEALQWIKS-LEAN- 74 (155)
T ss_pred HHHHHHhCCCCC---EEEEEEeCCEeeE-cc-----------h------------hHHHHhHHHHHHHHHHHHH-hccc-
Confidence 355677899865 7899999984311 11 0 0234445555666666544 2211
Q ss_pred eEEEEeecchhhhhhHHHHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCccccc-ccccccCCCceEEEEeccccHHHH
Q 011001 346 LCAQLRLLDGQFKNHWKATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNY-LGDLAKDTDSFKLYFLRKEDELLA 424 (496)
Q Consensus 346 lcaqLRllDGqFKnH~~~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~ty-l~dl~~~~~~ykl~~l~e~d~lv~ 424 (496)
+|. ...-.+|+..+..+ .....+-+|+++||=.+ .++... +..+.+...++.+|.+.-++..-.
T Consensus 75 --------~G~-----t~l~~aL~~a~~~~-~~~~~~~~IilltDG~~-~~~~~~i~~~v~~~~~~~~i~~~~~g~~~~~ 139 (155)
T PF13768_consen 75 --------SGG-----TDLLAALRAALALL-QRPGCVRAIILLTDGQP-VSGEEEILDLVRRARGHIRIFTFGIGSDADA 139 (155)
T ss_pred --------CCC-----ccHHHHHHHHHHhc-ccCCCccEEEEEEeccC-CCCHHHHHHHHHhcCCCceEEEEEECChhHH
Confidence 111 12223444444433 34556788899998665 333333 444444456788988888877777
Q ss_pred HHHHHHHHhccCc
Q 011001 425 QTAQKLATAGHGL 437 (496)
Q Consensus 425 ~ta~kl~~a~hg~ 437 (496)
+.-++|+.+.+|.
T Consensus 140 ~~L~~LA~~~~G~ 152 (155)
T PF13768_consen 140 DFLRELARATGGS 152 (155)
T ss_pred HHHHHHHHcCCCE
Confidence 8888888888874
No 10
>KOG2097 consensus Predicted N6-adenine methylase involved in transcription regulation [Transcription]
Probab=26.60 E-value=19 Score=38.21 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=28.1
Q ss_pred cccccHHHHhhcc-ceeehhhhhcc--cccccCCcccccccccchhhhcccc
Q 011001 137 SVWHHAIELLRSG-RYVSMADIIDI--SSLVSSSMVKVLDFRRFASLWCGLD 185 (496)
Q Consensus 137 ~~~~~v~ell~~~-RyVsm~dfmDl--s~ia~~~~V~pId~R~f~S~Wcgv~ 185 (496)
++|.+...|+... .++.|+||++| ++| ++.|.|+.+|||-.
T Consensus 171 eeyv~~~g~~t~n~~fw~~~di~nL~id~i--------aa~psFlFlW~gs~ 214 (397)
T KOG2097|consen 171 EEYVRMAGCLTENMQFWTWDDIQNLPIDEI--------AAKPSFLFLWCGSG 214 (397)
T ss_pred HHHHHhccccccCceEecHHHhhcCchhhh--------ccCCceEEEEecCc
Confidence 3455555655544 77999999954 444 44689999998753
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.16 E-value=51 Score=28.90 Aligned_cols=19 Identities=32% Similarity=0.362 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHHHHHHHH
Q 011001 24 SPFFILSITIFTFLLLFIA 42 (496)
Q Consensus 24 ~~~~l~~~~~~~~~~~~~~ 42 (496)
|+.+||+..+|+++||+++
T Consensus 3 SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4567777666666554444
No 12
>PF12967 DUF3855: Domain of Unknown Function with PDB structure (DUF3855); InterPro: IPR024482 This domain forms an unusual alpha/beta fold where a six-stranded antiparallel beta-sheet is wrapped around a central alpha-helix, flanked by an additional alpha-helix and a small sub-domain consisting of a single beta-strand and a two-stranded antiparallel beta-sheet []. It shows weak structural similarities to phosphoribosylformylglycinamidine synthases and some thioesterase superfamily members, but its function is unknown.; PDB: 1O22_A.
Probab=25.47 E-value=47 Score=31.37 Aligned_cols=45 Identities=22% Similarity=0.579 Sum_probs=25.6
Q ss_pred EecCCCCCCccc---------ccccc-----cccCCCceEEEEe------ccccHHHHHHHHHHH
Q 011001 387 VMTDLPVTNWTG---------NYLGD-----LAKDTDSFKLYFL------RKEDELLAQTAQKLA 431 (496)
Q Consensus 387 vMTDLp~~nWt~---------tyl~d-----l~~~~~~ykl~~l------~e~d~lv~~ta~kl~ 431 (496)
..||||-.+||. +||+| +.+|...|++|.- +.+||+|.+--+-..
T Consensus 73 ~a~~lplg~w~~l~nvfvee~~yl~~y~~mki~s~~n~y~~yvpys~vk~knr~e~v~~fmkyff 137 (158)
T PF12967_consen 73 NAVDLPLGDWTDLNNVFVEEISYLDSYDYMKIHSEKNWYKIYVPYSSVKSKNRNEVVEEFMKYFF 137 (158)
T ss_dssp --TT--SSS-----S-EEEEEEE-EEETTEEEEEETTEEEEEEEGGGSTT--HHHHHHHHHHHHH
T ss_pred ccccCCcchhHHHHHHHHHhhhhhhccCCeEEeccCcEEEEEeehHHhhhccHHHHHHHHHHHHH
Confidence 469999999985 35554 4568889999963 667888887655443
No 13
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=24.73 E-value=1.1e+02 Score=26.47 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=35.5
Q ss_pred eEEEecCCCCCCcccccccccccCCCceEEEEeccccHH--HHHHHHHHHH
Q 011001 384 NIFVMTDLPVTNWTGNYLGDLAKDTDSFKLYFLRKEDEL--LAQTAQKLAT 432 (496)
Q Consensus 384 ~iFvMTDLp~~nWt~tyl~dl~~~~~~ykl~~l~e~d~l--v~~ta~kl~~ 432 (496)
+|++-++-+.+.|-.. +.|+-+.+-..||- .++|+| |+++||||-.
T Consensus 2 ~V~LS~~~A~a~WG~~--AllSf~~~ga~IHl-~~~~~l~~IQrAaRkLd~ 49 (77)
T PF12404_consen 2 QVTLSQQPAAAHWGEK--ALLSFNEQGATIHL-SEGDDLRAIQRAARKLDG 49 (77)
T ss_pred eEEeeCCCChhHhCcC--cEEEEcCCCEEEEE-CCCcchHHHHHHHHHHhh
Confidence 5788899999999855 34555667888987 666664 8999999976
No 14
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=24.20 E-value=1e+02 Score=25.70 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=37.1
Q ss_pred CCCeeEEEEeecchhhh-hh--HHHHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCcc
Q 011001 342 KAPFLCAQLRLLDGQFK-NH--WKATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWT 397 (496)
Q Consensus 342 k~pFlcaqLRllDGqFK-nH--~~~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt 397 (496)
++|---+|+||.||.=. .+ ...|+..|++=+++-.. ++..-+.-+||-.|..+.+
T Consensus 1 ~~p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~-~~~~~~f~L~t~fP~k~l~ 58 (79)
T cd01770 1 LEPTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARP-EFAARPFTLMTAFPVKELS 58 (79)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCC-CCCCCCEEEecCCCCcccC
Confidence 35667899999999432 22 33788999998886542 2223455668888987665
No 15
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=23.57 E-value=1.2e+02 Score=24.73 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=38.1
Q ss_pred CCeeEEEEeecchhhh-h--hHHHHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCccccc
Q 011001 343 APFLCAQLRLLDGQFK-N--HWKATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNY 400 (496)
Q Consensus 343 ~pFlcaqLRllDGqFK-n--H~~~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~ty 400 (496)
++..-+|+|+.||.-. . +...|+..|++-+.+....+..| .-++|-.|...++..+
T Consensus 2 ~~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~--f~L~t~~Prk~l~~~d 60 (80)
T smart00166 2 SDQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDP--FTLNSPFPRRTFTKDD 60 (80)
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCC--EEEEeCCCCcCCcccc
Confidence 3556789999999822 1 23488999999996544333344 5678888888776543
No 16
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=22.08 E-value=59 Score=29.06 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=15.7
Q ss_pred eeeeecccCcchHHHHHHHHhcc
Q 011001 299 QLYIDINAAPRDQRIQSLIENIE 321 (496)
Q Consensus 299 e~~idi~~s~~d~~~~sl~~~~~ 321 (496)
-.||||++++.+..-+.++++|+
T Consensus 40 ~~YiDi~~p~~~~~~~~~a~~I~ 62 (93)
T PF07315_consen 40 FTYIDIENPPENDHDQQFAERIL 62 (93)
T ss_dssp EEEEETTT----HHHHHHHHHHH
T ss_pred EEEEecCCCCccHHHHHHHHHHH
Confidence 45999999998877788888876
No 17
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=20.64 E-value=2.3e+02 Score=24.47 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCcccccccccccC-C-CceEEEEeccccHHHHHHHHHHHHhccCcee
Q 011001 363 ATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNYLGDLAKD-T-DSFKLYFLRKEDELLAQTAQKLATAGHGLRY 439 (496)
Q Consensus 363 ~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~tyl~dl~~~-~-~~ykl~~l~e~d~lv~~ta~kl~~a~hg~r~ 439 (496)
....+|+..++.+......+-.|+++||--..+. ..+.+.++. . ...++|.+.-+++.=....++++++.-|.-+
T Consensus 81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~--~~~~~~~~~~~~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~~ 157 (171)
T cd01461 81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNE--SQILKNVREALSGRIRLFTFGIGSDVNTYLLERLAREGRGIAR 157 (171)
T ss_pred CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCH--HHHHHHHHHhcCCCceEEEEEeCCccCHHHHHHHHHcCCCeEE
Confidence 4566777777776554556788899999764332 211112211 1 2567777776543334556777777766655
Done!