Query 011001
Match_columns 496
No_of_seqs 61 out of 63
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zy2_A Putative GDP-fucose pro 100.0 1.3E-33 4.4E-38 283.3 12.6 292 73-490 6-347 (362)
2 4ap5_A GDP-fucose protein O-fu 99.9 2.8E-22 9.4E-27 198.3 10.5 87 73-171 20-114 (408)
3 2hhc_A NODZ, nodulation fucosy 95.2 0.012 4.2E-07 56.2 4.0 70 323-392 148-226 (330)
4 2hhc_A NODZ, nodulation fucosy 92.5 0.26 9E-06 47.0 7.4 38 73-110 2-39 (330)
5 2de0_X Alpha-(1,6)-fucosyltran 85.0 1.4 4.9E-05 46.2 6.9 38 74-111 144-183 (526)
6 2de0_X Alpha-(1,6)-fucosyltran 63.9 3.9 0.00013 43.0 3.3 70 323-392 274-349 (526)
7 1tqj_A Ribulose-phosphate 3-ep 42.9 32 0.0011 31.7 5.4 83 348-442 34-118 (230)
8 2pjv_A Envelope glycoprotein; 35.4 5.2 0.00018 28.4 -0.9 11 469-479 9-19 (31)
9 1o22_A Orphan protein TM0875; 34.0 23 0.00079 32.4 2.8 44 387-430 85-148 (170)
10 1otg_A 5-carboxymethyl-2-hydro 29.5 1E+02 0.0035 26.0 6.0 59 344-404 59-123 (125)
11 1vdm_A Purine phosphoribosyltr 23.5 35 0.0012 28.6 1.9 19 473-491 93-111 (153)
12 1vch_A Phosphoribosyltransfera 23.1 35 0.0012 29.4 1.9 20 472-491 129-148 (175)
13 1l1q_A Adenine phosphoribosylt 22.5 36 0.0012 30.1 1.9 21 472-492 126-146 (186)
14 3qx1_A FAS-associated factor 1 21.9 1.3E+02 0.0046 23.4 5.0 53 342-397 4-59 (84)
15 1zn8_A APRT, adenine phosphori 21.0 42 0.0014 29.2 2.0 20 472-491 129-148 (180)
16 1y0b_A Xanthine phosphoribosyl 20.4 42 0.0014 29.6 1.9 20 472-491 129-148 (197)
17 1ufr_A TT1027, PYR mRNA-bindin 20.2 41 0.0014 29.3 1.8 19 472-490 105-123 (181)
No 1
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=100.00 E-value=1.3e-33 Score=283.32 Aligned_cols=292 Identities=18% Similarity=0.318 Sum_probs=188.8
Q ss_pred CCCceEEEecCCC-CcchHHHHHHHHHHHHHhcceeecCccc--ccccccCCCCCCccccccccccccccccHHHHhhcc
Q 011001 73 PDKKFFLYAPHSG-FSNQLGEFKNAILMAGILNRTLIVPPVL--DHHAVALGSCPKFRVQSPNQMRISVWHHAIELLRSG 149 (496)
Q Consensus 73 ~~ekyl~Y~PhsG-F~NQ~~~f~nAl~lAk~LNRTLivPp~~--~hha~p~~s~pK~Rv~~~~~vr~~~~~~v~ell~~~ 149 (496)
.++|||.|||||| ||||++||+++|+|||.||||||||||| .||. + .+|+++.||.+++|.+||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~-------~------~~vpf~~yF~v~~l~~yh 72 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPE-------T------KMIPFEFLFQVGTVAKYT 72 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSS-------C------EEECHHHHBCHHHHTTTS
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccCCc-------c------cccchhheeecchhhhhc
Confidence 4799999999999 9999999999999999999999999999 4444 3 699999999999999999
Q ss_pred ceeehhhhhcccccccCCcccccccccchhhhccccchhhhhcccCCCcchhhhHHHhhhhhcCCCCCCCCceEEecccC
Q 011001 150 RYVSMADIIDISSLVSSSMVKVLDFRRFASLWCGLDVDLACLISLNTQPSLLDRLRQCVSMLSGLNGNVDGCFFAVDDDC 229 (496)
Q Consensus 150 RyVsm~dfmDls~ia~~~~V~pId~R~f~S~Wcgv~~~~~c~~~l~~~~~~~~~~~~c~slL~~~~g~~~~cvY~V~ddc 229 (496)
|+|+|+||| +.|+|. |||+++|+.. |+..- .+.++ +.+ +.+|
T Consensus 73 rvi~me~Fm--~~lap~--~WP~~~R~~~-----------C~~~~---~~~~~--------------~~~------~~~C 114 (362)
T 3zy2_A 73 RVVTMQEFT--KKIMPT--VWPPEKRKAF-----------CWTPR---QAIYD--------------KSA------EPGC 114 (362)
T ss_dssp CEECHHHHH--HHTHHH--HSCGGGCEEE-----------ESSCB---C---------------------------CCBC
T ss_pred eeeeHHHHH--HHhccc--cCCcccceEe-----------ecccc---ccccC--------------CCC------CCCC
Confidence 999999999 999999 9999999742 22210 00000 000 1123
Q ss_pred cc-------ceeeccC----CCC-----CCCCCCCCchHHhhhhhhhhHHHHHHHHHHhhCCCCccCcceEEEeeccccc
Q 011001 230 RT-------TVWTYQS----GDE-----DGVLDPFQPDEQLKKKKKVSYVRRRRDVYKALGSGSKADSATILAFGTLFTA 293 (496)
Q Consensus 230 rt-------TvwtYq~----~~~-----d~~LdsFq~de~Lk~~Kkisyvrrrrdvyk~lG~gs~a~~a~lLaFGSLFs~ 293 (496)
.. ..|+.-+ +++ -+-| +|.. ...+ ..+. +.+. +++.-||||=+-= |
T Consensus 115 ~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l-~~~~-~~~~--------~~W~---~~~p----~~~~pVlAf~gaP-a 176 (362)
T 3zy2_A 115 HSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGF-DLNQ-MGSR--------KKWL---EKFP----SEEYPVLAFSSAP-A 176 (362)
T ss_dssp CTTSSTTHHHHHHHTTCCCCEEEECTTSTTTT-CC----------------CHH---HHSC----TTTCSEEEESSCS-S
T ss_pred CCCCCCCCCcchhccccccccceeccCccccc-cccc-hhHH--------HHHH---HhCC----cccCceEeecCCC-C
Confidence 22 2342210 000 0002 2210 1111 1122 2233 4888999985432 2
Q ss_pred cccCceeeeecccCcchHHHHHHHHhcccccchHHHHHhhHHHHHHhcCCCeeEEEEeec-----------ch----hhh
Q 011001 294 PYKGSQLYIDINAAPRDQRIQSLIENIEFIPFVPEILSAGKKYAFETIKAPFLCAQLRLL-----------DG----QFK 358 (496)
Q Consensus 294 ~YkGse~~idi~~s~~d~~~~sl~~~~~~lpf~p~i~~agk~~a~~~ik~pFlcaqLRll-----------DG----qFK 358 (496)
+|- ..+. .+-++ +.|-+++.|+.+|++||++.+..||+++|||-| || .|.
T Consensus 177 ~FP-------v~~e------~r~Lq--kYm~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~aC~hlk~~~~~~lfa 241 (362)
T 3zy2_A 177 PFP-------SKGK------VWSIQ--KYLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRVCEHIDTTTNRPLFA 241 (362)
T ss_dssp CSS-------CCGG------GGGGG--GGCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHHHHTCCTTTCCCCTT
T ss_pred CCC-------cChh------hHhHH--HhccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHHHhhhccccCccccc
Confidence 222 1221 12333 468899999999999999999889999999997 33 333
Q ss_pred hhHH----------------HHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCcccccccccccCCCceEEEEeccccHH
Q 011001 359 NHWK----------------ATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNYLGDLAKDTDSFKLYFLRKEDEL 422 (496)
Q Consensus 359 nH~~----------------~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~tyl~dl~~~~~~ykl~~l~e~d~l 422 (496)
+++= -++..+..+|+.+..+ .+.-+|||+||=.. |.. -|..+.+. ..++++.++
T Consensus 242 SPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~-~~lksVFIATDa~~--~~~-ELk~~L~~-~~v~vv~~~----- 311 (362)
T 3zy2_A 242 SEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGS-IGAKSVFVASDKDH--MID-EINEALKP-YEIEAHRQE----- 311 (362)
T ss_dssp THHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHH-HTCSEEEEEESSCC--CHH-HHHHHHGG-GTCCEECCS-----
T ss_pred CCcccCCcccCcccchhccCCCHHHHHHHHHHHHHh-cCCcEEEEecCCHH--HHH-HHHHHhhc-cCceEEEeC-----
Confidence 3321 1566666666666432 25678999999332 321 11111111 122333222
Q ss_pred HHHHHHHHHHhccCceecccccccCCCCCCchhhhhhhhhhccccccccccCCCchhHHHHHHHHhcc
Q 011001 423 LAQTAQKLATAGHGLRYGVTGMEKPCPQRFSDVLLFIEQTVCSCATVGFVGTAGSTLAESIELMRKFD 490 (496)
Q Consensus 423 v~~ta~kl~~a~hg~r~~~~~~~~~c~~~lp~illyvee~vCsCAslGFvGT~GSTia~~ie~mRk~~ 490 (496)
|+ .-.|...+|+=|- .|+||-+||....|...|...
T Consensus 312 ------------------------------pe-~a~ID~~I~~~A~-~FIGN~~SSFSa~I~rERdi~ 347 (362)
T 3zy2_A 312 ------------------------------PD-DMYTSLAIMGRAD-LFVGNCVSTFSHIVKRERDHA 347 (362)
T ss_dssp ------------------------------SC-CHHHHHHHHHHSS-EEEECTTCHHHHHHHHHHHHS
T ss_pred ------------------------------Cc-hhHHHHHHHHhCC-EeecCccccccHHHHHHHHhc
Confidence 22 4567788888765 699999999999999999753
No 2
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.87 E-value=2.8e-22 Score=198.31 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=73.7
Q ss_pred CCCceEEEecCCC--CcchHHHHHHHHHHHHHhcce----eecCccc--ccccccCCCCCCccccccccccccccccHHH
Q 011001 73 PDKKFFLYAPHSG--FSNQLGEFKNAILMAGILNRT----LIVPPVL--DHHAVALGSCPKFRVQSPNQMRISVWHHAIE 144 (496)
Q Consensus 73 ~~ekyl~Y~PhsG--F~NQ~~~f~nAl~lAk~LNRT----LivPp~~--~hha~p~~s~pK~Rv~~~~~vr~~~~~~v~e 144 (496)
...|||+|+|++| |+||+++|++|+.||+.|||| ||||||. .|+.-+ . ....+|+++.+|.+..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~-----~---~~~~~ipf~~fFDv~~ 91 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSP-----D---IHQVRIPWSEFFDLPS 91 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGST-----T---SCCCSBCGGGTBCHHH
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCC-----c---ccceeccHHHhcCHHH
Confidence 5799999999965 999999999999999999999 9999997 455422 1 1225799999999999
Q ss_pred HhhccceeehhhhhcccccccCCcccc
Q 011001 145 LLRSGRYVSMADIIDISSLVSSSMVKV 171 (496)
Q Consensus 145 ll~~~RyVsm~dfmDls~ia~~~~V~p 171 (496)
|.++.++|+|+||| +..++. +|+
T Consensus 92 L~~~vpVI~meeFl--~~~~~~--~~~ 114 (408)
T 4ap5_A 92 LNKNIPVIEYEQFI--AESGGP--FID 114 (408)
T ss_dssp HHTTSCEEEHHHHH--HHSSSS--EEE
T ss_pred HHhhCCeeEHHHHH--HHhCCC--CCc
Confidence 99999999999999 777765 544
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=95.22 E-value=0.012 Score=56.18 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=45.3
Q ss_pred ccchHHHHHhhHHHHHHhcC-CCeeEEEEeecchhhh---h-hHH---HHHHHHHHHHHHhhhcCC-CceeEEEecCCC
Q 011001 323 IPFVPEILSAGKKYAFETIK-APFLCAQLRLLDGQFK---N-HWK---ATFLRLKEKLDSLRQKGP-QPINIFVMTDLP 392 (496)
Q Consensus 323 lpf~p~i~~agk~~a~~~ik-~pFlcaqLRllDGqFK---n-H~~---~Tf~~lk~kLesl~~~~~-~pi~iFvMTDLp 392 (496)
|-+.+.|-....++.++.+. .|++++|+|-+|+... + +|. ...+.....++..+.+.+ ....+||.||=|
T Consensus 148 l~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~vfvaSDd~ 226 (330)
T 2hhc_A 148 IKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGEDIMEHAPYWADSELALHQVCMAIRKAKALSYPKPVKVFLCTDSA 226 (330)
T ss_dssp SCBCHHHHHHHHHHHHHHTTTSEEEEEEECC------------CHHHHHHHHHHHHHHHHHHTSCCSSCEEEEEEESCH
T ss_pred CCccHHHHHHHHHHHHHhccCCceEEEEEecCCCCcccccCcchHHHhHHHHHHHHHHHHHHhccCcCceEEEEEeCCH
Confidence 35678888889999777544 5999999999997431 1 232 235666666666655444 468999999965
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=92.54 E-value=0.26 Score=47.00 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=35.2
Q ss_pred CCCceEEEecCCCCcchHHHHHHHHHHHHHhcceeecC
Q 011001 73 PDKKFFLYAPHSGFSNQLGEFKNAILMAGILNRTLIVP 110 (496)
Q Consensus 73 ~~ekyl~Y~PhsGF~NQ~~~f~nAl~lAk~LNRTLivP 110 (496)
++.||+.+-+..|++||+-++-.|+++|..+||+|+|-
T Consensus 2 ~~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd 39 (330)
T 2hhc_A 2 TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVID 39 (330)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 36799999999999999999999999999999998774
No 5
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=85.02 E-value=1.4 Score=46.25 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=33.2
Q ss_pred CCceEEEe--cCCCCcchHHHHHHHHHHHHHhcceeecCc
Q 011001 74 DKKFFLYA--PHSGFSNQLGEFKNAILMAGILNRTLIVPP 111 (496)
Q Consensus 74 ~ekyl~Y~--PhsGF~NQ~~~f~nAl~lAk~LNRTLivPp 111 (496)
.+|||.+- .-.||++|+-+..-++.+|-.+|||+|+-.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd 183 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILES 183 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEEC
Confidence 45888884 568999999999999999999999999843
No 6
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=63.95 E-value=3.9 Score=43.02 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=41.5
Q ss_pred ccchHHHHHhhHHHHHHh-cCCCeeEEEEeecchhhh---hhH-HHHHHHHHHHHHHhh-hcCCCceeEEEecCCC
Q 011001 323 IPFVPEILSAGKKYAFET-IKAPFLCAQLRLLDGQFK---NHW-KATFLRLKEKLDSLR-QKGPQPINIFVMTDLP 392 (496)
Q Consensus 323 lpf~p~i~~agk~~a~~~-ik~pFlcaqLRllDGqFK---nH~-~~Tf~~lk~kLesl~-~~~~~pi~iFvMTDLp 392 (496)
+=+.|+|.+...++..+. +..|.+++|+|-+|.... -|- ..-...+.+=++.+. .......+|||+||-|
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~~ifLATDDp 349 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDP 349 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEEESCH
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEcCCH
Confidence 557788888888886663 578999999999999421 121 111112222122222 2457789999999965
No 7
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=42.93 E-value=32 Score=31.67 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=50.0
Q ss_pred EEEeecchhhhhhHHHHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCcccccccccccCCCceEEEEecc--ccHHHHH
Q 011001 348 AQLRLLDGQFKNHWKATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNYLGDLAKDTDSFKLYFLRK--EDELLAQ 425 (496)
Q Consensus 348 aqLRllDGqFKnH~~~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~tyl~dl~~~~~~ykl~~l~e--~d~lv~~ 425 (496)
.|||+-||.|=.. .||- -..++.++.....|+.+-+|+.=| +.|+ |++.+...--+++--| ..+...+
T Consensus 34 ihldi~DG~fvp~--~~~g--~~~v~~lr~~~~~~~~vhlmv~dp-----~~~i-~~~~~aGadgv~vh~e~~~~~~~~~ 103 (230)
T 1tqj_A 34 IHVDVMDGRFVPN--ITIG--PLIVDAIRPLTKKTLDVHLMIVEP-----EKYV-EDFAKAGADIISVHVEHNASPHLHR 103 (230)
T ss_dssp EEEEEEBSSSSSC--BCBC--HHHHHHHGGGCCSEEEEEEESSSG-----GGTH-HHHHHHTCSEEEEECSTTTCTTHHH
T ss_pred EEEEEEecCCCcc--hhhh--HHHHHHHHhhcCCcEEEEEEccCH-----HHHH-HHHHHcCCCEEEECcccccchhHHH
Confidence 5999999999642 2221 155666665555688877777423 3455 3333443445555555 4445666
Q ss_pred HHHHHHHhccCceeccc
Q 011001 426 TAQKLATAGHGLRYGVT 442 (496)
Q Consensus 426 ta~kl~~a~hg~r~~~~ 442 (496)
.++++. ++|.+.++.
T Consensus 104 ~~~~i~--~~g~~~gv~ 118 (230)
T 1tqj_A 104 TLCQIR--ELGKKAGAV 118 (230)
T ss_dssp HHHHHH--HTTCEEEEE
T ss_pred HHHHHH--HcCCcEEEE
Confidence 666664 488888665
No 8
>2pjv_A Envelope glycoprotein; HIV, GP41, fusion, peptide, domain, membrane, DPC, viral protein; NMR {Human immunodeficiency virus 1}
Probab=35.41 E-value=5.2 Score=28.35 Aligned_cols=11 Identities=64% Similarity=1.207 Sum_probs=10.2
Q ss_pred cccccCCCchh
Q 011001 469 VGFVGTAGSTL 479 (496)
Q Consensus 469 lGFvGT~GSTi 479 (496)
|||.|++|||.
T Consensus 9 LGFLgaAGSTM 19 (31)
T 2pjv_A 9 LGFLGAAGSTV 19 (31)
T ss_dssp HTHHHHTCCSS
T ss_pred HHHhhcccccc
Confidence 79999999995
No 9
>1o22_A Orphan protein TM0875; structural genomics, joint center for struct genomics, JCSG, protein structure initiative, PSI, unknown; 2.00A {Thermotoga maritima} SCOP: d.238.1.1
Probab=34.02 E-value=23 Score=32.36 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=33.0
Q ss_pred EecCCCCCCcccc---------cccc-----cccCCCceEEEEe------ccccHHHHHHHHHH
Q 011001 387 VMTDLPVTNWTGN---------YLGD-----LAKDTDSFKLYFL------RKEDELLAQTAQKL 430 (496)
Q Consensus 387 vMTDLp~~nWt~t---------yl~d-----l~~~~~~ykl~~l------~e~d~lv~~ta~kl 430 (496)
..||||-.+||.- ||+| +.+|...|+||.- +.+||+|.+--+-.
T Consensus 85 ~a~~lplg~w~~lknvfvee~~yl~~y~~mki~s~~n~y~~yvpys~vk~knr~e~v~~fmkyf 148 (170)
T 1o22_A 85 NAVDLPLGDWTDLKNVFVEEIDYLDSYGDMKILSEKNWYKIYVPYSSVKKKNRNELVEEFMKYF 148 (170)
T ss_dssp CCTTCCSSSCCCCCSCEEEEEEECEEETTEEEEEETTEEEEEEEGGGSTTCCHHHHHHHHHHHH
T ss_pred ccccCCcchhHHHHHHHHHHHhhhhccCceEEecCCcEEEEEeehHHhhhccHHHHHHHHHHHH
Confidence 3689999999964 5554 4568889999963 67789988765543
No 10
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=29.46 E-value=1e+02 Score=26.02 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=36.2
Q ss_pred CeeEEEEeecchhhhhh----HHHHHHHHHHHHHHhhhcCCCceeE-EEecCCCCC-Cccccccccc
Q 011001 344 PFLCAQLRLLDGQFKNH----WKATFLRLKEKLDSLRQKGPQPINI-FVMTDLPVT-NWTGNYLGDL 404 (496)
Q Consensus 344 pFlcaqLRllDGqFKnH----~~~Tf~~lk~kLesl~~~~~~pi~i-FvMTDLp~~-nWt~tyl~dl 404 (496)
.|+=++++++.|-=..- -++-+..+++.|..+ -+..+.+| +.+.|+|++ ||.+.-+.+.
T Consensus 59 ~fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~--~~~~~~~vsv~i~E~~~~~~~~~~~~~~~ 123 (125)
T 1otg_A 59 AFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAAL--MESRLLALSFEIEELHPTLNFKQNNVHAL 123 (125)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHH--HTTSEEEEEEEEEECCSSSEEEEEGGGGG
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhh--cCCCceEEEEEEEEcCCccCHHHhhhhhh
Confidence 38889999998852221 223333333333321 24456666 678999999 9998876553
No 11
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=23.46 E-value=35 Score=28.64 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.2
Q ss_pred cCCCchhHHHHHHHHhccc
Q 011001 473 GTAGSTLAESIELMRKFDV 491 (496)
Q Consensus 473 GT~GSTia~~ie~mRk~~~ 491 (496)
-|+|+|+.+.++.+|+.|.
T Consensus 93 itTG~Tl~~a~~~L~~~ga 111 (153)
T 1vdm_A 93 SDTGKTLEVVIEEVKKLGA 111 (153)
T ss_dssp ESSCHHHHHHHHHHHTTTB
T ss_pred cCChHHHHHHHHHHHHcCC
Confidence 4899999999999999874
No 12
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=23.06 E-value=35 Score=29.37 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=17.7
Q ss_pred ccCCCchhHHHHHHHHhccc
Q 011001 472 VGTAGSTLAESIELMRKFDV 491 (496)
Q Consensus 472 vGT~GSTia~~ie~mRk~~~ 491 (496)
+-|+|+|+.+.++.+++.|.
T Consensus 129 vitTG~Tl~~~~~~L~~~Ga 148 (175)
T 1vch_A 129 VVASGETMRAMEKMVLRAGG 148 (175)
T ss_dssp EESSSHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHcCC
Confidence 35999999999999999874
No 13
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=22.51 E-value=36 Score=30.06 Aligned_cols=21 Identities=38% Similarity=0.370 Sum_probs=18.2
Q ss_pred ccCCCchhHHHHHHHHhcccc
Q 011001 472 VGTAGSTLAESIELMRKFDVC 492 (496)
Q Consensus 472 vGT~GSTia~~ie~mRk~~~c 492 (496)
+-|+|+|+.+.++.+++.|.-
T Consensus 126 VitTG~Tl~aa~~~L~~~Ga~ 146 (186)
T 1l1q_A 126 VLATGGTLLAAIELCETAGVK 146 (186)
T ss_dssp EESSSHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHHHHHcCCC
Confidence 459999999999999998853
No 14
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=21.89 E-value=1.3e+02 Score=23.39 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=37.0
Q ss_pred CCCeeEEEEeecchhh-h--hhHHHHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCcc
Q 011001 342 KAPFLCAQLRLLDGQF-K--NHWKATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWT 397 (496)
Q Consensus 342 k~pFlcaqLRllDGqF-K--nH~~~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt 397 (496)
.+|-.-+|+|+.||.- . =+...|+..|++-+++.. ..+-..-+||..|+...+
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~---~~~~~f~L~t~fPrk~l~ 59 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG---FPWDEYKLLSTFPRRDVT 59 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTT---CCTTTEEEECSSSCCBGG
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcC---CCCCCeEEEeCCCCCCCc
Confidence 3577789999999962 1 123478999999999732 233444567889987765
No 15
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=20.99 E-value=42 Score=29.17 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.6
Q ss_pred ccCCCchhHHHHHHHHhccc
Q 011001 472 VGTAGSTLAESIELMRKFDV 491 (496)
Q Consensus 472 vGT~GSTia~~ie~mRk~~~ 491 (496)
+-|+|+|+.+.++.+|+.|.
T Consensus 129 vitTG~Tl~~~~~~L~~~Ga 148 (180)
T 1zn8_A 129 LLATGGTMNAACELLGRLQA 148 (180)
T ss_dssp EESSSHHHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHcCC
Confidence 34999999999999999884
No 16
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU genomics, PSI, protein structure initative, midwest center structural genomics; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=20.37 E-value=42 Score=29.59 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=17.7
Q ss_pred ccCCCchhHHHHHHHHhccc
Q 011001 472 VGTAGSTLAESIELMRKFDV 491 (496)
Q Consensus 472 vGT~GSTia~~ie~mRk~~~ 491 (496)
+-|+|+|+.+.++.+++.|.
T Consensus 129 vitTG~Tl~~a~~~L~~~Ga 148 (197)
T 1y0b_A 129 FLANGQAAHGLVSIVKQAGA 148 (197)
T ss_dssp EESSCHHHHHHHHHHHHTTC
T ss_pred ccccCHHHHHHHHHHHHCCC
Confidence 35999999999999999883
No 17
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=20.20 E-value=41 Score=29.29 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=17.2
Q ss_pred ccCCCchhHHHHHHHHhcc
Q 011001 472 VGTAGSTLAESIELMRKFD 490 (496)
Q Consensus 472 vGT~GSTia~~ie~mRk~~ 490 (496)
+-|+|+|+.+.++.+++.|
T Consensus 105 vitTG~Tl~~a~~~L~~~G 123 (181)
T 1ufr_A 105 VLYTGRTARAALDALIDLG 123 (181)
T ss_dssp EESSSHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHhcC
Confidence 3499999999999999987
Done!