Query 011001
Match_columns 496
No_of_seqs 61 out of 63
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 18:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011001.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011001hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o22a_ d.238.1.1 (A:) Hypothe 34.3 11 0.00079 31.8 2.8 43 388-430 69-131 (149)
2 d7reqa2 c.23.6.1 (A:561-728) M 28.4 10 0.00076 32.2 1.7 81 348-429 1-86 (168)
3 d1l8qa2 c.37.1.20 (A:77-289) C 24.2 40 0.0029 28.3 4.8 73 358-438 112-184 (213)
4 d1ijba_ c.62.1.1 (A:) von Will 20.2 1.5E+02 0.011 23.7 7.6 66 268-340 40-105 (202)
5 d2dy1a3 d.14.1.1 (A:455-569) E 19.2 55 0.004 26.1 4.3 48 327-374 56-112 (115)
6 d2v3za1 c.55.2.1 (A:1-176) Ami 16.6 43 0.0031 27.0 3.2 19 259-277 5-23 (176)
7 d1h8ca_ d.15.1.2 (A:) Fas-asso 16.2 43 0.0031 24.4 2.8 54 343-399 3-59 (82)
8 d1gcya2 c.1.8.1 (A:1-357) G4-a 14.9 1.3E+02 0.0097 25.2 6.1 73 363-448 34-118 (357)
9 d2gc6a1 c.59.1.2 (A:297-425) F 13.7 33 0.0024 25.7 1.5 14 280-293 107-120 (129)
10 d1vcha1 c.61.1.1 (A:2-175) Put 12.4 43 0.0031 27.3 2.0 19 472-490 128-146 (174)
No 1
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga maritima [TaxId: 2336]}
Probab=34.30 E-value=11 Score=31.82 Aligned_cols=43 Identities=26% Similarity=0.624 Sum_probs=32.4
Q ss_pred ecCCCCCCcccc---------cccc-----cccCCCceEEEEe------ccccHHHHHHHHHH
Q 011001 388 MTDLPVTNWTGN---------YLGD-----LAKDTDSFKLYFL------RKEDELLAQTAQKL 430 (496)
Q Consensus 388 MTDLp~~nWt~t---------yl~d-----l~~~~~~ykl~~l------~e~d~lv~~ta~kl 430 (496)
.||||-.+||.- ||+| +.+|.+.|+||.- +.+||+|.+--+-.
T Consensus 69 a~~lplg~w~~lknvfvee~~yl~~y~~mki~s~~n~y~~yvpys~vk~knr~e~v~~fmkyf 131 (149)
T d1o22a_ 69 AVDLPLGDWTDLKNVFVEEIDYLDSYGDMKILSEKNWYKIYVPYSSVKKKNRNELVEEFMKYF 131 (149)
T ss_dssp CTTCCSSSCCCCCSCEEEEEEECEEETTEEEEEETTEEEEEEEGGGSTTCCHHHHHHHHHHHH
T ss_pred cccCCcchhhhhHHHHHHhhhhhhccCceEEecCCcEEEEEeehHHhhhccHHHHHHHHHHHH
Confidence 689999999964 5554 4568889999963 66788988765543
No 2
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=28.43 E-value=10 Score=32.18 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=55.0
Q ss_pred EEEeecchhhhhhHH--HHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCccccc-ccccccCCCceEEEEecc--ccHH
Q 011001 348 AQLRLLDGQFKNHWK--ATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNY-LGDLAKDTDSFKLYFLRK--EDEL 422 (496)
Q Consensus 348 aqLRllDGqFKnH~~--~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~ty-l~dl~~~~~~ykl~~l~e--~d~l 422 (496)
|+.|+.-|.++.|-. +.|..+|++++++..+.+.+..|++.|==+-.-+-|.. +.+...+. -|++..|.- .-|-
T Consensus 1 ~~~~~~~gv~~~~~~~~~~~e~lr~~~~~~~~~~gr~pkVlla~~g~D~Hd~G~~~va~~l~~~-G~eVi~lg~~~~~e~ 79 (168)
T d7reqa2 1 AQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADL-GFDVDVGPLFQTPEE 79 (168)
T ss_dssp CCCCCCCSHHHHHSCCCHHHHHHHHHHHHHHHHHSSCCEEEEECBTTCCCCHHHHHHHHHHHHT-TCEEEECCTTBCHHH
T ss_pred CceeccceeehhhcCCCHHHHHHHHHHHHHHHhhCCCCeEEEEeCCccHHHHHHHHHHHHHHhC-CcceecCCCcCcHHH
Confidence 467888899998874 89999999999987665666788888755555555544 44444443 588887643 3333
Q ss_pred HHHHHHH
Q 011001 423 LAQTAQK 429 (496)
Q Consensus 423 v~~ta~k 429 (496)
+.++|++
T Consensus 80 iv~aa~~ 86 (168)
T d7reqa2 80 TARQAVE 86 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444443
No 3
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=24.18 E-value=40 Score=28.32 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCcccccccccccCCCceEEEEeccccHHHHHHHHHHHHhccCc
Q 011001 358 KNHWKATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGNYLGDLAKDTDSFKLYFLRKEDELLAQTAQKLATAGHGL 437 (496)
Q Consensus 358 KnH~~~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~tyl~dl~~~~~~ykl~~l~e~d~lv~~ta~kl~~a~hg~ 437 (496)
+..|...+-.+.+.+. ..| .+|.+.++.|+.+|. ..++||.+-=..--++.|...||..++..++.+ ...|+
T Consensus 112 ~~~~~~~lf~lin~~~---~~~---~~iiits~~~p~~l~-~~~~dL~SRL~~g~~~~i~p~d~~~~~iL~~~a-~~rgl 183 (213)
T d1l8qa2 112 KERTQIEFFHIFNTLY---LLE---KQIILASDRHPQKLD-GVSDRLVSRFEGGILVEIELDNKTRFKIIKEKL-KEFNL 183 (213)
T ss_dssp CHHHHHHHHHHHHHHH---HTT---CEEEEEESSCGGGCT-TSCHHHHHHHHTSEEEECCCCHHHHHHHHHHHH-HHTTC
T ss_pred chHHHHHHHHHHHHHh---hcc---ceEEEecCCcchhcc-ccchHHHHHhhCceEEEECCCcHHHHHHHHHHH-HHcCC
Confidence 3567777666766554 222 357899999999996 468888543334455555667776666666655 56666
Q ss_pred e
Q 011001 438 R 438 (496)
Q Consensus 438 r 438 (496)
.
T Consensus 184 ~ 184 (213)
T d1l8qa2 184 E 184 (213)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.21 E-value=1.5e+02 Score=23.71 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=41.9
Q ss_pred HHHHhhCCCCccCcceEEEeeccccccccCceeeeecccCcchHHHHHHHHhcccccchHHHHHhhHHHHHHh
Q 011001 268 DVYKALGSGSKADSATILAFGTLFTAPYKGSQLYIDINAAPRDQRIQSLIENIEFIPFVPEILSAGKKYAFET 340 (496)
Q Consensus 268 dvyk~lG~gs~a~~a~lLaFGSLFs~~YkGse~~idi~~s~~d~~~~sl~~~~~~lpf~p~i~~agk~~a~~~ 340 (496)
++.+.|-.|.......|+.||+- ++..+++........+++.++.++...-...-+..|.+++.+.
T Consensus 40 ~~i~~l~~~~~~~rvavv~y~~~-------~~~~~~l~~~~~~~~l~~~i~~l~~~~g~~~~~~~al~~~~~~ 105 (202)
T d1ijba_ 40 DMMERLRVSQKWVRVAVVEYHDG-------SHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQ 105 (202)
T ss_dssp HHHHTBCBSTTSEEEEEEEESSS-------EEEEECTTCCCCHHHHHHHHHTCCCCCBSCCCHHHHHHHHHHH
T ss_pred HHHHHhccCCCCcEEEEEEEecc-------eeeecCCcccchHHHHHHHHHhhhhhhhccccHHHHHHHHHHH
Confidence 46677755555566778888763 3456777766666778888888876544334445555555543
No 5
>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=19.24 E-value=55 Score=26.06 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=33.8
Q ss_pred HHHHHhhHHHHHHhc--CCCeeEEEEeecchhhh-------hhHHHHHHHHHHHHHH
Q 011001 327 PEILSAGKKYAFETI--KAPFLCAQLRLLDGQFK-------NHWKATFLRLKEKLDS 374 (496)
Q Consensus 327 p~i~~agk~~a~~~i--k~pFlcaqLRllDGqFK-------nH~~~Tf~~lk~kLes 374 (496)
|.|.+..++-....+ +-|...++++|.||.|. .-..++..++|+.++.
T Consensus 56 ~ave~gv~~a~~~G~l~GyPv~dvkv~L~dg~~h~~dSse~AF~~Aa~~A~reA~~~ 112 (115)
T d2dy1a3 56 EAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 112 (115)
T ss_dssp HHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCCceeeeEEEEEEeecccCCCCHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 46999999999999996 2344888999988874
No 6
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli [TaxId: 562]}
Probab=16.56 E-value=43 Score=27.02 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHhhCCCC
Q 011001 259 KVSYVRRRRDVYKALGSGS 277 (496)
Q Consensus 259 kisyvrrrrdvyk~lG~gs 277 (496)
|-+|..||+.+.+.|++||
T Consensus 5 ~~ey~~RR~~l~~~l~~~s 23 (176)
T d2v3za1 5 RQEFQRRRQALVEQMQPGS 23 (176)
T ss_dssp HHHHHHHHHHHHHHSCSSE
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 4568889999999999975
No 7
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.22 E-value=43 Score=24.40 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=37.5
Q ss_pred CCeeEEEEeecchhhh---hhHHHHHHHHHHHHHHhhhcCCCceeEEEecCCCCCCcccc
Q 011001 343 APFLCAQLRLLDGQFK---NHWKATFLRLKEKLDSLRQKGPQPINIFVMTDLPVTNWTGN 399 (496)
Q Consensus 343 ~pFlcaqLRllDGqFK---nH~~~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp~~nWt~t 399 (496)
+|..-+|+|+.||.=. =+-..|+..|++-+++.. ..+-..-++|..|.-..+..
T Consensus 3 e~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~~---~~~~~~~l~~~~Pr~~l~~~ 59 (82)
T d1h8ca_ 3 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG---FPWDEYKLLSTFPRRDVTQL 59 (82)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHT---CCSSSEEEEETTTTEETTTC
T ss_pred CCcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhcC---CCCCceEEEecCcccccccc
Confidence 4566689999999422 233578999999999753 33345567788888777644
No 8
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Probab=14.93 E-value=1.3e+02 Score=25.18 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhcCCCceeEEEecCCC---------CC-CcccccccccccCCCceEEEEeccccHHHHHHHHHHHH
Q 011001 363 ATFLRLKEKLDSLRQKGPQPINIFVMTDLP---------VT-NWTGNYLGDLAKDTDSFKLYFLRKEDELLAQTAQKLAT 432 (496)
Q Consensus 363 ~Tf~~lk~kLesl~~~~~~pi~iFvMTDLp---------~~-nWt~tyl~dl~~~~~~ykl~~l~e~d~lv~~ta~kl~~ 432 (496)
.||++|++||.-|+.-|=..|-| |-=.. .. .+.|++..|..-|. +| ...+++ ++|+.
T Consensus 34 ~~~~~i~~kl~yl~~lGv~aIwl--~P~~~~~~~~~~~~~~~~~hgY~~~dy~vd~-~~-----Gt~~df-----~~LV~ 100 (357)
T d1gcya2 34 DWYNILRQQAATIAADGFSAIWM--PVPWRDFSSWSDGSKSGGGEGYFWHDFNKNG-RY-----GSDAQL-----RQAAS 100 (357)
T ss_dssp THHHHHHHHHHHHHHTTCSEEEE--CCCSCCCCCBC---CCBCCSSTTCSSSCSCS-SS-----CCHHHH-----HHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCEEEe--CcCeeCCccCCCCCCCCCCCCcChhhcccCc-cC-----CCHHHH-----HHHHH
Confidence 46999999999998666555443 31110 01 23466666664444 32 344433 55555
Q ss_pred hc--cCceecccccccCC
Q 011001 433 AG--HGLRYGVTGMEKPC 448 (496)
Q Consensus 433 a~--hg~r~~~~~~~~~c 448 (496)
+- +|+++.+..--+||
T Consensus 101 ~aH~~GI~VIlD~V~NH~ 118 (357)
T d1gcya2 101 ALGGAGVKVLYDVVPNHM 118 (357)
T ss_dssp HHHHTTCEEEEEECCSBC
T ss_pred HHHhcCCeEEEEEecccc
Confidence 54 58999666666777
No 9
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=13.74 E-value=33 Score=25.72 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=10.6
Q ss_pred CcceEEEeeccccc
Q 011001 280 DSATILAFGTLFTA 293 (496)
Q Consensus 280 ~~a~lLaFGSLFs~ 293 (496)
.+-.+|+|||++..
T Consensus 107 ~~~~vli~GS~ylv 120 (129)
T d2gc6a1 107 PDQPIVITGSLYLA 120 (129)
T ss_dssp TTSCEEEESCHHHH
T ss_pred CCCcEEEEehHHHH
Confidence 34579999999843
No 10
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase TTHA1613 {Thermus thermophilus [TaxId: 274]}
Probab=12.43 E-value=43 Score=27.34 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=17.1
Q ss_pred ccCCCchhHHHHHHHHhcc
Q 011001 472 VGTAGSTLAESIELMRKFD 490 (496)
Q Consensus 472 vGT~GSTia~~ie~mRk~~ 490 (496)
+-|+|.|+.+.++.+++.|
T Consensus 128 vi~TG~Tl~a~~~~l~~~G 146 (174)
T d1vcha1 128 VVASGETMRAMEKMVLRAG 146 (174)
T ss_dssp EESSSHHHHHHHHHHHHTT
T ss_pred eecccHHHHHHHHHHHHCC
Confidence 3589999999999999988
Done!