BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011002
(496 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359494318|ref|XP_002266863.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Vitis vinifera]
Length = 633
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/498 (80%), Positives = 433/498 (86%), Gaps = 13/498 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI+EESDEFRLPTKEE++EE +QPPDLPNLQRRIKEIVRVLSNF L Q+G RK+Y
Sbjct: 135 MQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDY 194
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QL++DLGSYYGYNEFLIG LVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 195 VEQLRVDLGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 254
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 255 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 314
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN G+I+ANEMK RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 315 RIVDMAAAPGGKTTYIAALMKNGGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKE 374
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQKQLILAAIDMVDA
Sbjct: 375 LPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDA 434
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF RFREHRFH SLE
Sbjct: 435 NSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLE 494
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKKMSNSK +PSE VE+Q PE N S+ + E ++
Sbjct: 495 KTRRFYPHVHNMDGFFVAKLKKMSNSKPNPTPSEPSE-VEEQAPEENDSDSELNMGEKTQ 553
Query: 421 QVLMKKATTKAK--------DLKKKTSGL----AENGNVESPSNEKRRKKRKFPSREEIS 468
Q K+ T K K KK+ GL ENG ESPS +RKKRKFPSREEIS
Sbjct: 554 QHPGKRGTKKEKTQQHPGKRGTKKENGGLKNAAPENGKKESPSTTTKRKKRKFPSREEIS 613
Query: 469 KVREEKRKTLREKVSSKK 486
K REEKRKT+REK + K
Sbjct: 614 KAREEKRKTMREKKGASK 631
>gi|147778971|emb|CAN71575.1| hypothetical protein VITISV_037193 [Vitis vinifera]
Length = 741
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/500 (79%), Positives = 433/500 (86%), Gaps = 13/500 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI+EESDEFRLPTKEE++EE +QPPDLPNLQRRIKEIVRVLSNF L Q+G RK+Y
Sbjct: 137 MQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDY 196
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QL++DLGSYYGYNEFLIG LVEMFP +ELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 197 VEQLRVDLGSYYGYNEFLIGVLVEMFPVIELMELIEAFEKPRPICLRTNTLKTRRRDLAD 256
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 257 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 316
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+I+ANEMK RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 317 RIVDMAAAPGGKTTYIAALMKNSGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKE 376
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQKQLILAAIDMVDA
Sbjct: 377 LPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDA 436
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF RFREHRFH SLE
Sbjct: 437 NSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLE 496
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKKMSNSK +PSE VE+Q PE N S+ + E ++
Sbjct: 497 KTRRFYPHVHNMDGFFVAKLKKMSNSKPNPTPSEPSE-VEEQAPEENDSDSELNMGEKTQ 555
Query: 421 QVLMKKATTKAKDLKKKTSGL----AENGNVESPSNEKRRKKRKFPSREEISKVREEKRK 476
Q K+ T KK+ GL ENG ESPS +RKKRKFPSREEISK R +
Sbjct: 556 QHPGKRGT------KKENGGLKNAAPENGKKESPSTTTKRKKRKFPSREEISKAR--AKS 607
Query: 477 TLREKVSSKKAGSKDKGNEK 496
+RE+ S+KK S+ N +
Sbjct: 608 GMREEDSTKKQRSRAASNRQ 627
>gi|255563570|ref|XP_002522787.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus
communis]
gi|223538025|gb|EEF39638.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus
communis]
Length = 624
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/492 (78%), Positives = 438/492 (89%), Gaps = 11/492 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++LNI EESDEFRLPTKEE+E+E ++PPDL NLQRRI+EIVRVLSN KDL Q+G RK+Y
Sbjct: 132 LRLNINEESDEFRLPTKEELEDEARRPPDLQNLQRRIREIVRVLSNLKDLKQEGARRKDY 191
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK+DL SYYGYN+FLIG LVEMFP EL+ELIE+ EKPRPICLRTNTLKTRRRDLAD
Sbjct: 192 VEQLKMDLCSYYGYNDFLIGVLVEMFPVNELIELIEACEKPRPICLRTNTLKTRRRDLAD 251
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA+SFLPVMALAPQEKE
Sbjct: 252 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSANSFLPVMALAPQEKE 311
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+IYANE+K RLKSLTANLHRMGVTNTIVCNYDG E
Sbjct: 312 RIVDMAAAPGGKTTYIAALMKNSGIIYANEIKVPRLKSLTANLHRMGVTNTIVCNYDGRE 371
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
L K+LG N VDRVLLDAPCSGTGVISKDESVKTSKSL+DIQKC++LQKQLILAAIDMVDA
Sbjct: 372 LIKILGHNAVDRVLLDAPCSGTGVISKDESVKTSKSLDDIQKCAHLQKQLILAAIDMVDA 431
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCS+MV ENEAVIDYALKKRDVKLVPCGLDFGR GF+RFREHRFHPSLE
Sbjct: 432 NSKSGGYIVYSTCSMMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREHRFHPSLE 491
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKKMSNS T+ +P E+VEQ + ESN S K+E+N+
Sbjct: 492 KTRRFYPHVHNMDGFFVAKLKKMSNSIPTAESSEPLESVEQAS-ESNES----KSEKNTA 546
Query: 421 QVLMKKATTKA-KDLKKK----TSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKR 475
+ L KK+ K K ++K ++G+++NGNV+S + K KKRKFPSR++ISK+REEKR
Sbjct: 547 EPLKKKSVVKIEKGAREKGKGLSNGVSDNGNVKSATAAKNTKKRKFPSRDDISKIREEKR 606
Query: 476 KTLREKVSSKKA 487
K LRE V +K+A
Sbjct: 607 KALRE-VKNKEA 617
>gi|356524384|ref|XP_003530809.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Glycine max]
Length = 614
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/484 (79%), Positives = 419/484 (86%), Gaps = 6/484 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI +ESDEFRLPTKEE++EE +PPDL NLQRR KEIVRVLSNFK L Q G++RKEY
Sbjct: 122 MQLNINQESDEFRLPTKEELDEEALRPPDLSNLQRRTKEIVRVLSNFKALRQDGSTRKEY 181
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK DL +YYGYNEFLIGALVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 182 VEQLKKDLCTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 241
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 242 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 301
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMAAAPGGKTTYIAALMKNTG+I+ANEMK RLKSLTANLHRMGV+NT+VCNYDG E
Sbjct: 302 RVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKE 361
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQK+LILAAIDMVDA
Sbjct: 362 LPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDA 421
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGY+VYSTCSIMV ENE+VIDYALKKRDVKLVPCGLDFGR GF +FRE RFHPSLE
Sbjct: 422 NSKSGGYVVYSTCSIMVAENESVIDYALKKRDVKLVPCGLDFGRPGFTKFREQRFHPSLE 481
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHV NMDGFFVAKLKKMS+SK G SET E++ S V +K ++ E
Sbjct: 482 KTRRFYPHVQNMDGFFVAKLKKMSSSK---PGAISSETAEKEDTTSFVEEKEKSSDGIKE 538
Query: 421 QVLMKKATTKAKDLK---KKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKT 477
+ + K K K K ++GL NG S S K+R KR+FPS+EEISK RE+KR
Sbjct: 539 NGNVSSESEKGKKRKFPSKPSNGLKSNGKESSESEPKKRNKRQFPSKEEISKAREDKRNA 598
Query: 478 LREK 481
LREK
Sbjct: 599 LREK 602
>gi|356569611|ref|XP_003552992.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Glycine max]
Length = 610
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/487 (78%), Positives = 421/487 (86%), Gaps = 9/487 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI +ESDEFRLPTKEE+E+E +PPDL NLQRRIKEIVRVLSNFK L Q G++RKEY
Sbjct: 116 MQLNINQESDEFRLPTKEELEDEALRPPDLSNLQRRIKEIVRVLSNFKALRQDGSTRKEY 175
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK DL +YYGYNEFLIGALVEMFP VELMELIE+FEKPRP+CLRTNTLKTRRRDLAD
Sbjct: 176 VEQLKKDLCTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPMCLRTNTLKTRRRDLAD 235
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 236 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 295
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RVIDMAAAPGGKTTYIAALMKNTG+I+ANEMK RLKSLT NLHRMGV+NT+VCNYDG E
Sbjct: 296 RVIDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTGNLHRMGVSNTVVCNYDGKE 355
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQK+LILAAIDMVDA
Sbjct: 356 LPKVLGVNVVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDA 415
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIMV ENEAVIDYALKKRDVKLVPCGLDFGR GF RFRE RFHPSLE
Sbjct: 416 NSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFTRFREQRFHPSLE 475
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHV NMDGFFVAKLKKMS+SK G + SET E++ + +K+ +
Sbjct: 476 KTRRFYPHVQNMDGFFVAKLKKMSSSK---PGAKSSETAEKEEDTTTFVEEKEKSSYGIK 532
Query: 421 QVLMKKATTKAKDLKKK------TSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEK 474
+ + +++K+ KK+ ++GL E G S S K+R KR FPS+EEISK REEK
Sbjct: 533 ENGNVSSESESKNGKKRKFPSKPSNGLKEKGKESSESEPKKRNKRLFPSKEEISKAREEK 592
Query: 475 RKTLREK 481
R LREK
Sbjct: 593 RNALREK 599
>gi|449462383|ref|XP_004148920.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Cucumis sativus]
gi|449484971|ref|XP_004157033.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
methyltransferase NOP2-like [Cucumis sativus]
Length = 611
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/488 (77%), Positives = 419/488 (85%), Gaps = 4/488 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI++ESDEFRLPTKEE+EEE +PPDL +LQRRI+EIVRVLSNFK L Q+G +RK+Y
Sbjct: 128 MQLNIKDESDEFRLPTKEELEEESLRPPDLSSLQRRIREIVRVLSNFKALRQEGATRKDY 187
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK D+GSYYGYNEFLIG LVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 188 VEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 247
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQ ASSFLPVMALAPQEKE
Sbjct: 248 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKE 307
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+I+ANE+KA RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 308 RIVDMAAAPGGKTTYIAALMKNSGMIFANEIKAQRLKSLTANLHRMGVTNTVVCNYDGKE 367
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+NT DRVLLDAPCSG+GV+SKDESVKTSKSLE+IQKC+ LQKQLILAAIDMVD+
Sbjct: 368 LPKVLGMNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDS 427
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGY+VYSTCSIMV ENEA++DYAL+KRDVKLVPCGLDFGR GF+RFRE RFHPSLE
Sbjct: 428 NSKSGGYVVYSTCSIMVDENEAIVDYALRKRDVKLVPCGLDFGRPGFIRFREKRFHPSLE 487
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKKMSN K SA + SE++ + E + E+N
Sbjct: 488 KTRRFYPHVHNMDGFFVAKLKKMSN-KIPSA--KSSESLNEAVEEDDDDTKKVGNEKNDG 544
Query: 421 QVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKTLRE 480
+ L + K K + + NG P+ E R KKRKFPSREEIS+ REEKR+ LR
Sbjct: 545 ECLHPQLNDGGKGKKGSQNHVVGNGKESKPTVE-RSKKRKFPSREEISRAREEKRQALRV 603
Query: 481 KVSSKKAG 488
K K G
Sbjct: 604 KKHGSKKG 611
>gi|224061242|ref|XP_002300386.1| predicted protein [Populus trichocarpa]
gi|222847644|gb|EEE85191.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/493 (75%), Positives = 415/493 (84%), Gaps = 19/493 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
M+LNI EESDEFRLPT +++ +PPD+ +LQRRI EIVRVLSN KDL Q+G+SRK+Y
Sbjct: 1 MKLNIAEESDEFRLPT-QKVCSLSLRPPDIQSLQRRINEIVRVLSNLKDLKQEGSSRKDY 59
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QLK+DL YYGYNEFLIGALVEMFP ELMELIE+FEKPRP CLRTNTLKTRRRDLA+
Sbjct: 60 VHQLKIDLCKYYGYNEFLIGALVEMFPVNELMELIEAFEKPRPTCLRTNTLKTRRRDLAN 119
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAG YMLQSASSF+PVMALAPQEKE
Sbjct: 120 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGHYMLQSASSFMPVMALAPQEKE 179
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+IYANE+KA RL+SLTANLHRMGVTNTIVCNYDG E
Sbjct: 180 RIVDMAAAPGGKTTYIAALMKNSGIIYANEIKAQRLRSLTANLHRMGVTNTIVCNYDGRE 239
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPK LGLNTVDRVLLDAPCSGTGVISKDESVK SK+ EDI++C++LQKQL+LAAIDMVDA
Sbjct: 240 LPKTLGLNTVDRVLLDAPCSGTGVISKDESVKISKTSEDIEQCAHLQKQLLLAAIDMVDA 299
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIMV ENEA +DYALKKR+VKLVPCGLDFGR GFVRFR+HRFHPSLE
Sbjct: 300 NSKSGGYIVYSTCSIMVAENEAAVDYALKKRNVKLVPCGLDFGRPGFVRFRQHRFHPSLE 359
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKK+SNS SAG +PSE+VEQ N S+ +K T
Sbjct: 360 KTRRFYPHVHNMDGFFVAKLKKLSNS-IPSAGTEPSESVEQAY-GLNESDREKST----- 412
Query: 421 QVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKTLRE 480
+T K K L T+G +G E+PS+ KR KRK PSREEISK R K + +
Sbjct: 413 ------STEKGKSL---TNGFPNDGTPENPSSAKRGMKRKIPSREEISKSRRRKEQLIER 463
Query: 481 KVS--SKKAGSKD 491
+ + GS+D
Sbjct: 464 LIGMLQRTVGSED 476
>gi|22328952|ref|NP_194390.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
gi|17979390|gb|AAL49920.1| unknown protein [Arabidopsis thaliana]
gi|22136852|gb|AAM91770.1| unknown protein [Arabidopsis thaliana]
gi|332659825|gb|AEE85225.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
Length = 671
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/502 (70%), Positives = 416/502 (82%), Gaps = 25/502 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT--SRK 58
++NI+E+ DEF+LPT++E+EEE ++PPDLP+LQ RI+EIVR+LSNFKDL KG R
Sbjct: 163 FKMNIKEKPDEFQLPTQKELEEEARRPPDLPSLQMRIREIVRILSNFKDLKPKGDKHERN 222
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
+YV QLK DL SYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDL
Sbjct: 223 DYVGQLKADLSSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDL 282
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
AD+L+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+E
Sbjct: 283 ADILLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPRE 342
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
KERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 343 KERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDG 402
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
EL KVLG ++VDRVLLDAPCSGTGVISKDESVKTSKS +DI+K ++LQKQLIL AID+V
Sbjct: 403 RELTKVLGQSSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLV 462
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPS 358
DANSK+GGYIVYSTCS+M+ ENEAVIDYALK RDVKLVPCGLDFGR GF FREHRFHPS
Sbjct: 463 DANSKTGGYIVYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFREHRFHPS 522
Query: 359 LEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESN----------- 407
LEKTRRFYPHVHNMDGFFVAKLKKMSN+ + S +P+ T+EQ S+
Sbjct: 523 LEKTRRFYPHVHNMDGFFVAKLKKMSNAMQPSGNDEPAVTMEQAQVSSSDDDDEKAEAIE 582
Query: 408 ------VSNGDKKTEENSEQVLMKKATTKAKDL---KKKTSGLAENGNVESPSNEKRRKK 458
V++G K E N+++ K+ ++K++ K+ + E+GNVE P +++KK
Sbjct: 583 ELEKPPVASGQPKRESNTKEDTNKRKNPRSKEIHKGKRNKNTKTESGNVEEP---RKQKK 639
Query: 459 RKFPSREEISKVREEKRKTLRE 480
++ + EI++ REEKRKT+RE
Sbjct: 640 KRSQWKNEIAQAREEKRKTMRE 661
>gi|297803436|ref|XP_002869602.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp.
lyrata]
gi|297315438|gb|EFH45861.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp.
lyrata]
Length = 650
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/507 (70%), Positives = 414/507 (81%), Gaps = 25/507 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT--SRK 58
++NI+E DEF+LPT++E+EEE ++PPDLP+LQ RI+EIVRVLSNFKDL KG R
Sbjct: 142 FKMNIKEIPDEFQLPTQKELEEEARRPPDLPSLQIRIREIVRVLSNFKDLRPKGDKHERT 201
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
++V+QLK DLGSYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDL
Sbjct: 202 DFVEQLKADLGSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDL 261
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
ADVL+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+E
Sbjct: 262 ADVLLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPRE 321
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
KERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 322 KERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDG 381
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
ELPKVLG N+VDRVLLDAPCSGTGVISKDESVKTSKS +DI+K ++LQKQLIL AID+V
Sbjct: 382 RELPKVLGQNSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLV 441
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPS 358
DANSK+GGYIVYSTCSIM+ ENEAVIDYALK RDVKLVPCGLDFGR GF F EHRFHPS
Sbjct: 442 DANSKTGGYIVYSTCSIMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFIEHRFHPS 501
Query: 359 LEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESN----------- 407
LEKTRRFYPH+HNMDGFFVAKLKKMSN+ + S +P T+EQ S+
Sbjct: 502 LEKTRRFYPHIHNMDGFFVAKLKKMSNAMQPSGNVEPDITMEQAQVSSSDDDDEKVEAIE 561
Query: 408 ------VSNGDKKTEENSEQVLMKKATTKAKDLKK-KTSGLAENG--NVESPSNEKRRKK 458
V+NG K E N+ + K+ ++K++ K K + + G NVE P +++KK
Sbjct: 562 ESEKPPVTNGQPKRESNTRENKNKQKIPRSKEIDKGKRNKYTKTGSSNVEEP---RKQKK 618
Query: 459 RKFPSREEISKVREEKRKTLREKVSSK 485
++ + EI++ REEKRK +RE K
Sbjct: 619 KRSQWKNEIAQAREEKRKAMRENAKEK 645
>gi|357460225|ref|XP_003600394.1| hypothetical protein MTR_3g060700 [Medicago truncatula]
gi|355489442|gb|AES70645.1| hypothetical protein MTR_3g060700 [Medicago truncatula]
Length = 1069
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/508 (70%), Positives = 402/508 (79%), Gaps = 39/508 (7%)
Query: 19 EIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFL 78
E+EEE +PPDL NLQRRIKEIVRVLSNFK L Q G +RK+YV QLK D+ SYYGYNEFL
Sbjct: 564 ELEEEALRPPDLSNLQRRIKEIVRVLSNFKALRQDGATRKDYVDQLKTDIRSYYGYNEFL 623
Query: 79 IGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 138
IGALVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV
Sbjct: 624 IGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 683
Query: 139 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAA 198
GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER++DMAAAPGGKTTYIAA
Sbjct: 684 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAA 743
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258
LMKN+G+I+ANEMK RLKSLTANLHRMGV+NT+V NYDG ELPKVLG N+VDRVLLDAP
Sbjct: 744 LMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLDAP 803
Query: 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318
CSGTGVISKDESVKTSK+LEDI+KC++LQK+L+LAAIDMVD+ SKSGGY+VYSTCSIMV
Sbjct: 804 CSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVA 863
Query: 319 ENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
ENEAVIDY LK+RDVKLVPCGLDFGR GF +FRE RFHPSL+KTRRFYPHVHNMDGFFVA
Sbjct: 864 ENEAVIDYVLKRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVHNMDGFFVA 923
Query: 379 KLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKK----TEENSEQVLMKKATTKAKDL 434
KLKKMS+ K + SET E+ E+ + D K EEN + ++ + KD
Sbjct: 924 KLKKMSHPKPA----RTSETFEKDEKETELVIDDDKPSNGVEENGKHSFELESKKRKKDK 979
Query: 435 --KKKTSGLAENGNVESPSNEKRRKKRKFPS---------------------------RE 465
K ++ + N S K+RKK KFPS RE
Sbjct: 980 FPSKPSNDVKANVKEASEPESKKRKKDKFPSKPSNDVKANVTETSEPKPKRVKRKPPSRE 1039
Query: 466 EISKVREEKRKTLREKVSSKKAGSKDKG 493
EISK REEKR L EK +K+G + +G
Sbjct: 1040 EISKAREEKRLALIEK--KRKSGKQQRG 1065
>gi|148910608|gb|ABR18374.1| unknown [Picea sitchensis]
gi|224286369|gb|ACN40892.1| unknown [Picea sitchensis]
Length = 641
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/507 (69%), Positives = 413/507 (81%), Gaps = 23/507 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLNI+EE D+FRLPT +E+E+E +QPPDL NL+RRIKE+VRVLSNFK L Q+GT+RK+Y
Sbjct: 128 LQLNIQEEPDDFRLPTAQELEDEGKQPPDLQNLKRRIKEVVRVLSNFKALRQEGTTRKDY 187
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QL DL YYGYN++L+ +EMFP E++ELIE+ E RP CLRTNTLKTRRRDLA
Sbjct: 188 VNQLVADLSLYYGYNDYLVQTFLEMFPVAEVVELIEANEISRPTCLRTNTLKTRRRDLAG 247
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPL KWSKVGL+VYDSQVPIGATPEYMAG YMLQSASSFLPVMALAPQEKE
Sbjct: 248 VLINRGVNLDPLGKWSKVGLIVYDSQVPIGATPEYMAGHYMLQSASSFLPVMALAPQEKE 307
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMAAAPGGKTTYIAALMKNTG+IYANE+K SRLKSL+AN+HRMGVTN+I+CNYDG E
Sbjct: 308 RVLDMAAAPGGKTTYIAALMKNTGIIYANELKNSRLKSLSANIHRMGVTNSIICNYDGRE 367
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLGLN++DRVLLDAPCSGTG+I KDE+VK+ KS EDI KC++LQKQL+LAAIDMVDA
Sbjct: 368 LPKVLGLNSLDRVLLDAPCSGTGIIWKDENVKSKKSAEDIMKCAFLQKQLLLAAIDMVDA 427
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SKSGGY+VYSTCSI V ENEAV++YAL KRDVK+VPCGLDFG+ GFVRFREHRFHPSLE
Sbjct: 428 GSKSGGYLVYSTCSITVAENEAVVNYALSKRDVKVVPCGLDFGQHGFVRFREHRFHPSLE 487
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN----SKKTSAGPQPSETVEQQTPESNVSNGDKKTE 416
KTRRFYPHVHNMDGFFVAKLKKMSN SK T AG VE + E +++G+ T+
Sbjct: 488 KTRRFYPHVHNMDGFFVAKLKKMSNTKPISKATEAGENIPNIVENKDGE--INDGNIVTD 545
Query: 417 ENSEQVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRK 476
+ SE++ + A +E +++ ++KR+ K+K PS+EEISK REEKRK
Sbjct: 546 Q-SERLYTETALINES---------SETKMIKANKHDKRQGKKKLPSKEEISKSREEKRK 595
Query: 477 TLR-------EKVSSKKAGSKDKGNEK 496
LR EK K+ G D+ +E+
Sbjct: 596 ALRKAKSDGQEKEIEKEHGKLDESSEQ 622
>gi|297796467|ref|XP_002866118.1| hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp.
lyrata]
gi|297311953|gb|EFH42377.1| hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp.
lyrata]
Length = 674
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/494 (69%), Positives = 400/494 (80%), Gaps = 15/494 (3%)
Query: 8 ESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
E D FRLPT+EE+ EE + PPDLP L+ RI+EIVR L NFK K T+RK V QLK D
Sbjct: 180 EHDAFRLPTEEELAEEARGPPDLPLLKSRIEEIVRALKNFKAFRPKDTTRKACVDQLKDD 239
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
LGSYYGYN FLIG LVEMFPP ELMELIE+FEK RP +RTNTLKTRRRDLADVL+NRGV
Sbjct: 240 LGSYYGYNSFLIGTLVEMFPPGELMELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGV 299
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
NLDPLSKWSKVGLV+YDSQVPIGATPEY+AG+YMLQ ASSFLPVMALAP+E ER++D+AA
Sbjct: 300 NLDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAA 359
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTTYIAALMKNTGLIYANEMK RLKSLTANLHRMGVTNTIVCNYDG ELPKVLG
Sbjct: 360 APGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQ 419
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
NTVDRVLLDAPCSGTG+ISKDESVK +K++++I+K ++LQKQL+L AIDMVDANSK+GGY
Sbjct: 420 NTVDRVLLDAPCSGTGIISKDESVKITKTVDEIKKFAHLQKQLLLGAIDMVDANSKTGGY 479
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
+VYSTCSIMVTENEAVIDYALKKRDVKLV CGLDFGR+GF RFREHRF PSL+KTRRFYP
Sbjct: 480 VVYSTCSIMVTENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYP 539
Query: 368 HVHNMDGFFVAKLKKMSNSKKTSAGPQPS-ETVEQQTPESNV--------------SNGD 412
HVHNMDGFFVAKLKKMSN K++S G + ETVEQ S+ S D
Sbjct: 540 HVHNMDGFFVAKLKKMSNMKQSSEGDDEAVETVEQAEVSSDDDDDEAEAIEEIEKPSVPD 599
Query: 413 KKTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVRE 472
++ +E E+ ++ +D + K +++ NVE PS +++KK++ + EI++ RE
Sbjct: 600 RQPKEAKEKKNKERLAKSKEDKRGKKDKKSKSENVEEPSKARKQKKKRSEWKNEIAQARE 659
Query: 473 EKRKTLREKVSSKK 486
EKR +REK +K
Sbjct: 660 EKRIAMREKAKEEK 673
>gi|30696661|ref|NP_850927.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
gi|9758212|dbj|BAB08657.1| nucleolar protein-like [Arabidopsis thaliana]
gi|332009316|gb|AED96699.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
Length = 682
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/494 (70%), Positives = 399/494 (80%), Gaps = 15/494 (3%)
Query: 8 ESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
E D FRLPT+EE+EEE + PPDLP L+ RI+EIVR L NFK K T+RK V+QLK D
Sbjct: 189 EHDAFRLPTEEELEEEARGPPDLPLLKTRIEEIVRALKNFKAFRPKDTTRKACVEQLKAD 248
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
LGSYYGYN FLIG LVEMFPP ELMELIE+FEK RP +RTNTLKTRRRDLADVL+NRGV
Sbjct: 249 LGSYYGYNSFLIGTLVEMFPPGELMELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGV 308
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
NLDPLSKWSKVGLV+YDSQVPIGATPEY+AG+YMLQ ASSFLPVMALAP+E ER++D+AA
Sbjct: 309 NLDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAA 368
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTTYIAALMKNTGLIYANEMK RLKSLTANLHRMGVTNTIVCNYDG ELPKVLG
Sbjct: 369 APGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQ 428
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
NTVDRVLLDAPCSGTG+ISKDESVK +K++++I+K ++LQKQL+LAAIDMVDANSK+GGY
Sbjct: 429 NTVDRVLLDAPCSGTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGY 488
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
IVYSTCSIMVTENEAVIDYALKKRDVKLV CGLDFGR+GF RFREHRF PSL+KTRRFYP
Sbjct: 489 IVYSTCSIMVTENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYP 548
Query: 368 HVHNMDGFFVAKLKKMSNSKKTS--AGPQPSETVEQQTPESNVSNGDKKTEENSEQVL-- 423
HVHNMDGFFVAKLKKMSN K++S ETVEQ S+ + + EE + +
Sbjct: 549 HVHNMDGFFVAKLKKMSNVKQSSEEGDDDAVETVEQAEVSSDDDDEAEAIEETEKPSVPV 608
Query: 424 -----------MKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVRE 472
+K +D + K +++ NVE PS +++KK++ + EI++ RE
Sbjct: 609 RQPKERKEKKNKEKLAKSKEDKRGKKDKKSKSENVEEPSKPRKQKKKRREWKNEIAQARE 668
Query: 473 EKRKTLREKVSSKK 486
EKR +REK +K
Sbjct: 669 EKRIAMREKAKEEK 682
>gi|302754002|ref|XP_002960425.1| hypothetical protein SELMODRAFT_437511 [Selaginella moellendorffii]
gi|300171364|gb|EFJ37964.1| hypothetical protein SELMODRAFT_437511 [Selaginella moellendorffii]
Length = 579
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/496 (66%), Positives = 388/496 (78%), Gaps = 29/496 (5%)
Query: 1 MQLNIREESDE---FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSR 57
+Q NI+ E DE FRLPT E++E E PPDLP++QRRIK+IVRVLSNFK L Q+G +R
Sbjct: 104 LQTNIQAEGDEPDDFRLPTSEDLEAEASLPPDLPSVQRRIKDIVRVLSNFKALRQEGRAR 163
Query: 58 KEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRD 117
K+Y +QL D+ SYYGYNEFL ++MFP E +E +E+ E PRP+ LRTNTLKTRRRD
Sbjct: 164 KDYTKQLIADVASYYGYNEFLAEYFMQMFPVAEAVEFLEANETPRPLSLRTNTLKTRRRD 223
Query: 118 LADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQ 177
LA VLINRGVNLDP+ KWSKVGLVVYDSQVP+GATPEYMAG YMLQSASSFLPVMALAPQ
Sbjct: 224 LAGVLINRGVNLDPIGKWSKVGLVVYDSQVPVGATPEYMAGHYMLQSASSFLPVMALAPQ 283
Query: 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237
EKER++D+AAAPGGKTTYIAALMKNTGLIYANE+K RLKSLTAN++RMGVTN++VCNYD
Sbjct: 284 EKERIVDVAAAPGGKTTYIAALMKNTGLIYANELKVQRLKSLTANIYRMGVTNSVVCNYD 343
Query: 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
G ELPKVLG N+VDRVLLDAPCSGTG++ KD+SVK +KSLEDIQ+C++LQK+LILAAID+
Sbjct: 344 GRELPKVLGRNSVDRVLLDAPCSGTGIVGKDQSVKLTKSLEDIQRCAFLQKELILAAIDL 403
Query: 298 VDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
VDANS SGGY+VYSTCS+ V ENEAV+DYALKKR VK+VP GL+FG++GF+RFRE RFHP
Sbjct: 404 VDANSSSGGYLVYSTCSVTVAENEAVVDYALKKRHVKVVPSGLEFGKEGFIRFREKRFHP 463
Query: 358 SLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEE 417
SL TRRFYPHVHNMDGFFVAKLKK+SN + PE+N D+ E
Sbjct: 464 SLANTRRFYPHVHNMDGFFVAKLKKLSN----------------KIPEAN-KETDEAEVE 506
Query: 418 NSEQVLMKKATTKAKDLKKKTSGLAENGNVESPSNEK-----RRKKRKFPSREEISKVRE 472
N +++ K A T L K + A+ VE P +K RR + PS+EEIS+ RE
Sbjct: 507 NVQELEQKPAIT----LAPKDASPAKQNGVEKPQGKKRKRLLRRDLKNLPSKEEISRARE 562
Query: 473 EKRKTLREKVSSKKAG 488
EKR T R+ K A
Sbjct: 563 EKRATARKTTKPKSAA 578
>gi|222423014|dbj|BAH19490.1| AT5G55920 [Arabidopsis thaliana]
Length = 625
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/417 (78%), Positives = 362/417 (86%), Gaps = 6/417 (1%)
Query: 8 ESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
E D FRLPT+EE+EEE + PPDLP L+ RI+EIVR L NFK K T+RK V+QLK D
Sbjct: 189 EHDAFRLPTEEELEEEARGPPDLPLLKTRIEEIVRALKNFKAFRPKDTTRKACVEQLKAD 248
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
LGSYYGYN FLIG LVEMFPP ELMELIE+FEK RP +RTNTLKTRRRDLADVL+NRGV
Sbjct: 249 LGSYYGYNSFLIGTLVEMFPPGELMELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGV 308
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
NLDPLSKWSKVGLV+YDSQVPIGATPEY+AG+YMLQ ASSFLPVMALAP+E ER++D+AA
Sbjct: 309 NLDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAA 368
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTTYIAALMKNTGLIYANEMK RLKSLTANLHRMGVTNTIVCNYDG ELPKVLG
Sbjct: 369 APGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQ 428
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
NTVDRVLLDAPCSGTG+ISKDESVK +K++++I+K ++LQKQL+LAAIDMVDANSK+GGY
Sbjct: 429 NTVDRVLLDAPCSGTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGY 488
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
IVYSTCSIMVTENEAVIDYALKKRDVKLV CGLDFGR+GF RFREHRF PSL+KTRRFYP
Sbjct: 489 IVYSTCSIMVTENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYP 548
Query: 368 HVHNMDGFFVAKLKKMSNSKKTS--AGPQPSETVEQQTPESNVSNGDKKTEENSEQV 422
HVHNMDGFFVAKLKKMSN K++S ETVEQ + VS+ D E E+
Sbjct: 549 HVHNMDGFFVAKLKKMSNVKQSSEEGDDDAVETVEQ----AEVSSDDDDEAEAIEET 601
>gi|45735882|dbj|BAD12915.1| putative proliferating cell nuclear protein P120 [Oryza sativa
Japonica Group]
gi|45736012|dbj|BAD13040.1| putative proliferating cell nuclear protein P120 [Oryza sativa
Japonica Group]
Length = 682
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/486 (65%), Positives = 381/486 (78%), Gaps = 15/486 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++LNIR ESDEFRLPTKEE+EEE +PP+LPNL+RRI EIVRVLSNF L QK RK+Y
Sbjct: 159 LKLNIRSESDEFRLPTKEELEEEALRPPNLPNLKRRISEIVRVLSNFSKLRQKDVPRKDY 218
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QLK D+ SYYGYN+FL+ A +EMFP VEL+EL+ESFEK P CLRTNTLKTRRRDLA
Sbjct: 219 VNQLKTDIMSYYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAA 278
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPVMALAPQEKE
Sbjct: 279 ALIPRGFNLDPIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKE 338
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYI ALMKNTG+IYANE RL L N+HRMGVTNTIVCNYDG E
Sbjct: 339 RIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKE 398
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N+VDRVLLDAPC+GTG I KD +KTSK +EDI+ C+++QKQL+LAAID+VDA
Sbjct: 399 LPKVLGMNSVDRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDA 458
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGYIVYSTCS+M+ ENEAV+DYALKKR+VKLVPCGLDFGR GF+RFREHRFH SL+
Sbjct: 459 NSKTGGYIVYSTCSLMIPENEAVVDYALKKRNVKLVPCGLDFGRPGFIRFREHRFHTSLD 518
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHV+NMDGFFVAKLKK+SN+ P SE+ PE + D +++ +
Sbjct: 519 KTRRFYPHVNNMDGFFVAKLKKLSNTI-----PVASES--SNVPEEAIEKADPSSDDPQK 571
Query: 421 QVLMKKATTKAKDLKKKTS---GLAEN--GNVESPSNEKRRKKRKFPSREEISKVREEKR 475
Q + K K ++TS G+ ++ E+ N K+ KKR P E +K++ +++
Sbjct: 572 QPIQSKKHKDVKTTNEETSILDGVTKDKRQTHETLKNHKKGKKRNGP---ESTKIKGDQK 628
Query: 476 KTLREK 481
+T E+
Sbjct: 629 ETHNEE 634
>gi|7228247|emb|CAB77061.1| putative protein [Arabidopsis thaliana]
gi|7269512|emb|CAB79515.1| putative protein [Arabidopsis thaliana]
Length = 626
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/493 (65%), Positives = 385/493 (78%), Gaps = 51/493 (10%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT--SRK 58
++NI+E+ DEF+LPT++E+EEE ++PPDLP+LQ RI+EIVR+LSNFKDL KG R
Sbjct: 163 FKMNIKEKPDEFQLPTQKELEEEARRPPDLPSLQMRIREIVRILSNFKDLKPKGDKHERN 222
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
+YV QLK DL SYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDL
Sbjct: 223 DYVGQLKADLSSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDL 282
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
AD+L+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+E
Sbjct: 283 ADILLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPRE 342
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
KERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 343 KERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDG 402
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
E VISKDESVKTSKS +DI+K ++LQKQLIL AID+V
Sbjct: 403 RE-----------------------VISKDESVKTSKSADDIKKFAHLQKQLILGAIDLV 439
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPS 358
DANSK+GGYIVYSTCS+M+ ENEAVIDYALK RDVKLVPCGLDFGR G FREHRFHPS
Sbjct: 440 DANSKTGGYIVYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPG---FREHRFHPS 496
Query: 359 LEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESN----------- 407
LEKTRRFYPHVHNMDGFFVAKLKKMSN+ + S +P+ T+EQ S+
Sbjct: 497 LEKTRRFYPHVHNMDGFFVAKLKKMSNAMQPSGNDEPAVTMEQAQVSSSDDDDEKAEAIE 556
Query: 408 ------VSNGDKKTEENSEQVLMKKATTKAKDL---KKKTSGLAENGNVESPSNEKRRKK 458
V++G K E N+++ K+ ++K++ K+ + E+GNVE P +++KK
Sbjct: 557 ELEKPPVASGQPKRESNTKEDTNKRKNPRSKEIHKGKRNKNTKTESGNVEEP---RKQKK 613
Query: 459 RKFPSREEISKVR 471
++ + EI++ R
Sbjct: 614 KRSQWKNEIAQAR 626
>gi|242066150|ref|XP_002454364.1| hypothetical protein SORBIDRAFT_04g029465 [Sorghum bicolor]
gi|241934195|gb|EES07340.1| hypothetical protein SORBIDRAFT_04g029465 [Sorghum bicolor]
Length = 640
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/474 (66%), Positives = 370/474 (78%), Gaps = 7/474 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+NIR ESDEFRLPT EE+EEE +PP+LPNL+RRI EIVRVLSNF L QK RK+Y
Sbjct: 102 LQINIRSESDEFRLPTAEELEEEAHRPPNLPNLKRRISEIVRVLSNFSKLRQKDVPRKDY 161
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ QLK D+ SYYGYN+FL+ AL+EMFP VEL+EL+E+FEK P CLRTNTLKTRRRDLA
Sbjct: 162 INQLKTDIMSYYGYNDFLVEALIEMFPAVELVELLEAFEKRPPECLRTNTLKTRRRDLAA 221
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPVMALAPQEKE
Sbjct: 222 ALIPRGFNLDPIGKWSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKE 281
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYI ALMKNTG+IYANE RL L N+HRMGVTNTIV NYDG E
Sbjct: 282 RIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVSNYDGKE 341
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N+VDRVLLDAPC+GTG I KD +KTSK +EDI+ C+++QKQL+LAAID+VDA
Sbjct: 342 LPKVLGMNSVDRVLLDAPCTGTGTIWKDLQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDA 401
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF+R+REHRFH SLE
Sbjct: 402 NSKTGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFHTSLE 461
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN-----SKKTSAGPQPSETVEQQTPESNVSNGDKKT 415
KTRRFYPHV+NMDGFFVAKLKK+SN S+ + A + +E + + ++ + +
Sbjct: 462 KTRRFYPHVNNMDGFFVAKLKKLSNTIPVTSEPSKASEEAAEKADGEDEKAISNEQETAV 521
Query: 416 EENSEQVLMKKATTKAKDLKKKTSGLAENGNVESPSNE--KRRKKRKFPSREEI 467
E+ + K KAK K+TS + G + SN K KK K +EI
Sbjct: 522 PGEDEKTVQMKNQKKAKVTNKRTSVTKDTGGHKHESNRPGKHLKKNKDKDTKEI 575
>gi|115480547|ref|NP_001063867.1| Os09g0551300 [Oryza sativa Japonica Group]
gi|50726314|dbj|BAD33889.1| putative nucleolar protein [Oryza sativa Japonica Group]
gi|113632100|dbj|BAF25781.1| Os09g0551300 [Oryza sativa Japonica Group]
gi|218202587|gb|EEC85014.1| hypothetical protein OsI_32305 [Oryza sativa Indica Group]
Length = 699
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/438 (69%), Positives = 354/438 (80%), Gaps = 7/438 (1%)
Query: 4 NIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQ 63
NIR ESDEFRLPTKEE+EEE +PP+LP+L+RRI EIVRVLSNF L QK RK+YV Q
Sbjct: 167 NIRSESDEFRLPTKEELEEEALRPPNLPHLKRRISEIVRVLSNFSKLRQKDVPRKDYVDQ 226
Query: 64 LKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI 123
LK D+ SYYGYN+FL+ A +EMFP VEL+EL+ESFEK P CLRTNTLKTRRRDLA LI
Sbjct: 227 LKTDVMSYYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAAALI 286
Query: 124 NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPVMALAPQEKER++
Sbjct: 287 PRGFNLDPIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIV 346
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DMAAAPGGKTTYI ALMKNTG+IYANE RL L N+HRMGVTNTIVCNYDG ELPK
Sbjct: 347 DMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 406
Query: 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303
VLG+N+VDRVLLDAPC+GTG I KD +KTSK +EDI+ C+++QKQL+LAAID+VDANSK
Sbjct: 407 VLGMNSVDRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSK 466
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
+GGYIVYSTCS+M+ ENEAVIDYALKKR+VKLVPCGLDFGR GF+RFREHRFH SL+KTR
Sbjct: 467 TGGYIVYSTCSLMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFIRFREHRFHTSLDKTR 526
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
RFYPHV+NMDGFFVAKLKK+SN+ P + + PE + D +++ EQ +
Sbjct: 527 RFYPHVNNMDGFFVAKLKKLSNT-------IPVTSESSKVPEEAIEKTDPSSDDLQEQPI 579
Query: 424 MKKATTKAKDLKKKTSGL 441
K K + ++T+ L
Sbjct: 580 QSKIHKDVKKMNEETTIL 597
>gi|218191489|gb|EEC73916.1| hypothetical protein OsI_08757 [Oryza sativa Indica Group]
Length = 695
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/492 (64%), Positives = 377/492 (76%), Gaps = 13/492 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++LNIR ESDEFRLPTKEE+EEE +PP+LPNL+RRI EIVRVLSNF L QK RK+Y
Sbjct: 159 LKLNIRSESDEFRLPTKEELEEEALRPPNLPNLKRRISEIVRVLSNFSKLRQKDVPRKDY 218
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QLK D+ SYYGYN+FL+ A +EMFP VEL+EL+ESFEK P CLRTNTLKTRRRDLA
Sbjct: 219 VNQLKTDIMSYYGYNDFLVEAFIEMFPAVELVELLESFEKKPPECLRTNTLKTRRRDLAA 278
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPVMALAPQEKE
Sbjct: 279 ALIPRGFNLDPIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKE 338
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYI ALMKNTG+IYANE RL L N+HRMGVTNTIVCNYDG E
Sbjct: 339 RIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKE 398
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N+VDRVLLDAPC+GTG I KD +KTSK +EDI+ C+++QKQL+L+AID+VDA
Sbjct: 399 LPKVLGMNSVDRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLSAIDLVDA 458
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGYIVYSTCS+M+ ENEAV+DYALKKR+VKLVPCGLDFGR GF+RFREHRF SL+
Sbjct: 459 NSKTGGYIVYSTCSLMIPENEAVVDYALKKRNVKLVPCGLDFGRPGFIRFREHRFDTSLD 518
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHV+NMDGFFVAKLKK+SN+ P SE+ PE + D +++ +
Sbjct: 519 KTRRFYPHVNNMDGFFVAKLKKLSNTI-----PVASES--SNVPEEAIEKADPSSDDPQK 571
Query: 421 QVLMKKATTKAKDLKKKTS---GLAEN--GNVESPSNEKR-RKKRKFPSREEISKVREEK 474
Q + K K ++TS G+ ++ E+ N K+ KKR P +I ++E
Sbjct: 572 QPIQSKKHKDVKTTNEETSILDGVTKDKRQTHETLKNHKKGEKKRNGPESTKIKGDQKET 631
Query: 475 RKTLREKVSSKK 486
E S KK
Sbjct: 632 HNEQEEPTSEKK 643
>gi|222642043|gb|EEE70175.1| hypothetical protein OsJ_30252 [Oryza sativa Japonica Group]
Length = 688
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/438 (69%), Positives = 354/438 (80%), Gaps = 7/438 (1%)
Query: 4 NIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQ 63
NIR ESDEFRLPTKEE+EEE +PP+LP+L+RRI EIVRVLSNF L QK RK+YV Q
Sbjct: 167 NIRSESDEFRLPTKEELEEEALRPPNLPHLKRRISEIVRVLSNFSKLRQKDVPRKDYVDQ 226
Query: 64 LKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI 123
LK D+ SYYGYN+FL+ A +EMFP VEL+EL+ESFEK P CLRTNTLKTRRRDLA LI
Sbjct: 227 LKTDVMSYYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAAALI 286
Query: 124 NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPVMALAPQEKER++
Sbjct: 287 PRGFNLDPIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIV 346
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DMAAAPGGKTTYI ALMKNTG+IYANE RL L N+HRMGVTNTIVCNYDG ELPK
Sbjct: 347 DMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 406
Query: 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303
VLG+N+VDRVLLDAPC+GTG I KD +KTSK +EDI+ C+++QKQL+LAAID+VDANSK
Sbjct: 407 VLGMNSVDRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSK 466
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
+GGYIVYSTCS+M+ ENEAVIDYALKKR+VKLVPCGLDFGR GF+RFREHRFH SL+KTR
Sbjct: 467 TGGYIVYSTCSLMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFIRFREHRFHTSLDKTR 526
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
RFYPHV+NMDGFFVAKLKK+SN+ P + + PE + D +++ EQ +
Sbjct: 527 RFYPHVNNMDGFFVAKLKKLSNT-------IPVTSESSKVPEEAIEKTDPSSDDLQEQPI 579
Query: 424 MKKATTKAKDLKKKTSGL 441
K K + ++T+ L
Sbjct: 580 QSKIHKDVKKMNEETTIL 597
>gi|357143629|ref|XP_003572989.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Brachypodium distachyon]
Length = 772
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/383 (76%), Positives = 331/383 (86%)
Query: 4 NIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQ 63
NIR ESDEFRLPTKEE+EEE PP+LPNL+RRI EIVRVLSNF L Q RK+YV Q
Sbjct: 161 NIRSESDEFRLPTKEELEEEALGPPNLPNLKRRISEIVRVLSNFSKLRQVDVPRKDYVDQ 220
Query: 64 LKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI 123
K D+ +YYGYNEFLI A VEMFP VE++EL+ESFEK P CLRTNTLKTRRRDLA LI
Sbjct: 221 FKSDVMAYYGYNEFLIEAFVEMFPAVEVVELVESFEKRPPECLRTNTLKTRRRDLAAALI 280
Query: 124 NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPV+ALAPQEKER++
Sbjct: 281 PRGFNLDPIGKWSKVGLVVYDSTISSGATVEYMAGHYMKQGASSFLPVIALAPQEKERIV 340
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DMAAAPGGKTTYI ALMKNTG+IYANE+ RL L N+HRMGVTNTIVCNYDG ELPK
Sbjct: 341 DMAAAPGGKTTYIGALMKNTGIIYANELNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 400
Query: 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303
VLG+N+VDRVLLDAPC+GTG I KD +KTSK ++DI+ C+++QKQL++AAID+VDANSK
Sbjct: 401 VLGMNSVDRVLLDAPCTGTGTIWKDAQIKTSKDIDDIRNCAFVQKQLLIAAIDLVDANSK 460
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
+GGYIVYSTCS+M+ ENEAVIDYALKKRDVKLVPCGLDFGR GF+RFREHRFH SL+KTR
Sbjct: 461 TGGYIVYSTCSMMIPENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREHRFHTSLDKTR 520
Query: 364 RFYPHVHNMDGFFVAKLKKMSNS 386
RFYPHV+NMDGFFVAKLKKMSN+
Sbjct: 521 RFYPHVNNMDGFFVAKLKKMSNT 543
>gi|168051136|ref|XP_001778012.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670660|gb|EDQ57225.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 492
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/380 (76%), Positives = 341/380 (89%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI+ ++D+FRLPT+EE+E+E + PPDLPN+ RRIK+IVRVLS+FK L +G +R +Y
Sbjct: 93 MQLNIQGDADDFRLPTEEELEQEAKGPPDLPNILRRIKDIVRVLSSFKALRPEGAARADY 152
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QL DL YYGYN+FLI ++MFPP E++E +ES EKPRPI LRTNTLK+RRRDLA
Sbjct: 153 VKQLSSDLSLYYGYNDFLISTFLQMFPPAEVLEFLESNEKPRPISLRTNTLKSRRRDLAQ 212
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPL KW+KVGLVVY+SQVP+GATPEYMAG YMLQS SSFLPVMALAPQEKE
Sbjct: 213 VLINRGVNLDPLGKWTKVGLVVYESQVPVGATPEYMAGHYMLQSGSSFLPVMALAPQEKE 272
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMAAAPGGKTTYIAALMKNTG+IYANE+K R+KSL+ANLHRMGVTNTI+CNYDG +
Sbjct: 273 RVVDMAAAPGGKTTYIAALMKNTGVIYANELKEPRIKSLSANLHRMGVTNTIICNYDGRQ 332
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LP LGL +VDRVLLDAPCSGTGV+ KDESVK +KS EDIQ+C++LQK+LILAAIDMVDA
Sbjct: 333 LPHKLGLRSVDRVLLDAPCSGTGVVGKDESVKVTKSAEDIQRCAFLQKELILAAIDMVDA 392
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGY+VYSTCS+MV ENEAV+DYAL+KRDVK+VP GL+FGR+GF +FRE RFH +L+
Sbjct: 393 NSKTGGYLVYSTCSVMVAENEAVVDYALRKRDVKIVPTGLEFGREGFTKFRESRFHHTLK 452
Query: 361 KTRRFYPHVHNMDGFFVAKL 380
TRRFYPHVHNMDGFFVAK+
Sbjct: 453 NTRRFYPHVHNMDGFFVAKV 472
>gi|222623587|gb|EEE57719.1| hypothetical protein OsJ_08204 [Oryza sativa Japonica Group]
Length = 713
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/505 (62%), Positives = 378/505 (74%), Gaps = 35/505 (6%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++LNIR ESDEFRLPTKEE+EEE +PP+LPNL+RRI EIVRVLSNF L QK RK+Y
Sbjct: 159 LKLNIRSESDEFRLPTKEELEEEALRPPNLPNLKRRISEIVRVLSNFSKLRQKDVPRKDY 218
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QLK D+ SYYGYN+FL+ A +E+FP V+L+EL+ESFEK P CLRTNTLKTRRRDLA
Sbjct: 219 VNQLKTDIMSYYGYNDFLVEAFIEIFPAVKLVELLESFEKRPPECLRTNTLKTRRRDLAA 278
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPVMALAPQEKE
Sbjct: 279 ALIPRGFNLDPIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKE 338
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYI ALMKNTG+IYANE RL L N+HRMGVTNTIVCNYDG E
Sbjct: 339 RIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKE 398
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQK------------ 288
LPKVLG+N+VDRVLLDAPC+GTG I KD +KTSK +EDI+ C+++QK
Sbjct: 399 LPKVLGMNSVDRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKFFLNRAVILYWL 458
Query: 289 --------QLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGL 340
QL+LAAID+VDANSK+GGYIVYSTCS+M+ ENEAV+DYALKKR+VKLVPCGL
Sbjct: 459 STSITLKLQLLLAAIDLVDANSKTGGYIVYSTCSLMIPENEAVVDYALKKRNVKLVPCGL 518
Query: 341 DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVE 400
DFGR GF+RFREHRFH SL+KTRRFYPHV+NMDGFFVAKLKK+SN+ P SE+
Sbjct: 519 DFGRPGFIRFREHRFHTSLDKTRRFYPHVNNMDGFFVAKLKKLSNTI-----PVASES-- 571
Query: 401 QQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGL-----AENGNVESPSNEKR 455
PE + D +++ +Q + K K ++TS L + E+ N K+
Sbjct: 572 SNVPEEAIEKADPSSDDPQKQPIQSKKHKDVKTTNEETSILDGVTKDKRQTHETLKNHKK 631
Query: 456 RKKRKFPSREEISKVREEKRKTLRE 480
KKR P E +K++ ++++T E
Sbjct: 632 GKKRNGP---ESTKIKGDQKETHNE 653
>gi|212275840|ref|NP_001130579.1| uncharacterized protein LOC100191678 [Zea mays]
gi|194689536|gb|ACF78852.1| unknown [Zea mays]
gi|413923706|gb|AFW63638.1| hypothetical protein ZEAMMB73_244854 [Zea mays]
Length = 718
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/403 (74%), Positives = 343/403 (85%), Gaps = 1/403 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NIR ESDEFRLPT EE+EEE +PP+LPNL+RRI EIVRVLSNF L QK RK+Y
Sbjct: 165 LQTNIRSESDEFRLPTTEELEEEAHRPPNLPNLKRRISEIVRVLSNFSKLRQKDVPRKDY 224
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ QLK D+ SYYGYN+FL+ AL+EMFP VEL+EL+E+FEK P CLRTNTLK+RRRDLA
Sbjct: 225 INQLKTDVMSYYGYNDFLVEALIEMFPAVELVELLEAFEKRPPECLRTNTLKSRRRDLAA 284
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPVMALAPQEKE
Sbjct: 285 ALIPRGFNLDPIGKWSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKE 344
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYI ALMKNTG+IYANE RL L N+HRMGVTNTI+CNYDG E
Sbjct: 345 RIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLMGNIHRMGVTNTIICNYDGKE 404
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N+VDRVLLDAPC+GTG I KD +KTSK +EDI+ C+++QKQL+LAAID+VDA
Sbjct: 405 LPKVLGMNSVDRVLLDAPCTGTGTIWKDLQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDA 464
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF+R+REHRFH SLE
Sbjct: 465 NSKTGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFHTSLE 524
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-KKTSAGPQPSETVEQQ 402
KTRRFYPHV+NMDGFFVAKLKK+SN+ TS P+ SE ++
Sbjct: 525 KTRRFYPHVNNMDGFFVAKLKKLSNTIPVTSEQPKASEGAAEK 567
>gi|413923705|gb|AFW63637.1| hypothetical protein ZEAMMB73_244854 [Zea mays]
Length = 619
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/398 (75%), Positives = 341/398 (85%), Gaps = 1/398 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NIR ESDEFRLPT EE+EEE +PP+LPNL+RRI EIVRVLSNF L QK RK+Y
Sbjct: 66 LQTNIRSESDEFRLPTTEELEEEAHRPPNLPNLKRRISEIVRVLSNFSKLRQKDVPRKDY 125
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ QLK D+ SYYGYN+FL+ AL+EMFP VEL+EL+E+FEK P CLRTNTLK+RRRDLA
Sbjct: 126 INQLKTDVMSYYGYNDFLVEALIEMFPAVELVELLEAFEKRPPECLRTNTLKSRRRDLAA 185
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI RG NLDP+ KWSKVGLVVYDS + GAT EYMAG YM Q ASSFLPVMALAPQEKE
Sbjct: 186 ALIPRGFNLDPIGKWSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKE 245
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYI ALMKNTG+IYANE RL L N+HRMGVTNTI+CNYDG E
Sbjct: 246 RIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLMGNIHRMGVTNTIICNYDGKE 305
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N+VDRVLLDAPC+GTG I KD +KTSK +EDI+ C+++QKQL+LAAID+VDA
Sbjct: 306 LPKVLGMNSVDRVLLDAPCTGTGTIWKDLQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDA 365
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF+R+REHRFH SLE
Sbjct: 366 NSKTGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFHTSLE 425
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-KKTSAGPQPSE 397
KTRRFYPHV+NMDGFFVAKLKK+SN+ TS P+ SE
Sbjct: 426 KTRRFYPHVNNMDGFFVAKLKKLSNTIPVTSEQPKASE 463
>gi|302767744|ref|XP_002967292.1| hypothetical protein SELMODRAFT_86634 [Selaginella moellendorffii]
gi|300165283|gb|EFJ31891.1| hypothetical protein SELMODRAFT_86634 [Selaginella moellendorffii]
Length = 505
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/388 (74%), Positives = 338/388 (87%), Gaps = 6/388 (1%)
Query: 1 MQLNIREESDE---FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSR 57
+Q NI+ E DE FRLPT E++E E PPDLP++QRRIK+IVRVLSNFK L Q+G +R
Sbjct: 116 LQTNIQAEGDEPDDFRLPTSEDLEAEASLPPDLPSVQRRIKDIVRVLSNFKALRQEGRAR 175
Query: 58 KEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRD 117
K+Y +QL D+ SYYGYNEFL ++MFP E +E +E+ E PRP+ LRTNTLKTRRRD
Sbjct: 176 KDYTKQLIADVASYYGYNEFLAEYFMQMFPVAEAVEFLEANETPRPVSLRTNTLKTRRRD 235
Query: 118 LADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQ 177
LA VLINRGVNLDP+ KWSKVGLVVYDSQVP+GATPEYMAG YMLQSASSFLPVMALAPQ
Sbjct: 236 LAGVLINRGVNLDPIGKWSKVGLVVYDSQVPVGATPEYMAGHYMLQSASSFLPVMALAPQ 295
Query: 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237
EKER++D+AAAPGGKTTYIAALMKNTGLIYANE+K RLKSLTAN++RMGVTN++VCNYD
Sbjct: 296 EKERIVDVAAAPGGKTTYIAALMKNTGLIYANELKVQRLKSLTANIYRMGVTNSVVCNYD 355
Query: 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
G ELPKVLG N+VDRVLLDAPCSGTG++ KD+SVK +KSLEDIQ+C++LQK+LILAAID+
Sbjct: 356 GRELPKVLGRNSVDRVLLDAPCSGTGIVGKDQSVKLTKSLEDIQRCAFLQKELILAAIDL 415
Query: 298 VDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
VDANS SGGY+VYSTCS+ NEAV+DYALKKR VK+VP GL+FG++GF+RFRE RFHP
Sbjct: 416 VDANSSSGGYLVYSTCSVT---NEAVVDYALKKRHVKVVPTGLEFGKEGFIRFREKRFHP 472
Query: 358 SLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
SL TRRFYPHVHNMDGFFVAK+K+ N
Sbjct: 473 SLANTRRFYPHVHNMDGFFVAKVKESFN 500
>gi|301624894|ref|XP_002941729.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Xenopus (Silurana) tropicalis]
Length = 749
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 281/506 (55%), Positives = 368/506 (72%), Gaps = 30/506 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ E + F+LPT+EE+E+E PDL +Q RIK+IV VL NF G +R+EY
Sbjct: 230 IQLNVDSE-ELFQLPTEEELEKELSTAPDLVTVQERIKDIVGVLQNFAQRGG-GRTRQEY 287
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
++ LK DL +YY Y +++I L E+FP EL++ +E+ E RPI +RTNTLKTRRRDLA
Sbjct: 288 LKVLKKDLATYYSYGDYMIETLSELFPVSELVDFLEACEVQRPITIRTNTLKTRRRDLAQ 347
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINR VNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPV+ALAPQE E
Sbjct: 348 ALINRSVNLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENE 407
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM APGGKT+Y+A LMKNTG++ AN+M A RL+S+ NLHR+GVTN I+ NYDG +
Sbjct: 408 RVLDMCCAPGGKTSYMAQLMKNTGIVVANDMNADRLRSVVGNLHRLGVTNCIISNYDGRQ 467
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ KVLG DRVLLDAPCSGTG+ISKD +VKT+KS++D+Q+C+++QK+LIL+AID +DA
Sbjct: 468 ISKVLG--GFDRVLLDAPCSGTGIISKDPAVKTNKSVQDVQRCAHIQKELILSAIDALDA 525
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S++GG++VY TCSI V ENE V+DYALKKR+VKLVP GLDFG++GFVRF+E RFHPSL
Sbjct: 526 QSQTGGFMVYCTCSITVEENECVVDYALKKRNVKLVPTGLDFGKEGFVRFKERRFHPSLR 585
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
+ RRFYPH HNMDGFF+AKL+K SN+ P+P++ E +TP + N DK T++ +
Sbjct: 586 QARRFYPHTHNMDGFFIAKLRKFSNTI-----PKPNKDEETETPSPDQLNEDKATKQKA- 639
Query: 421 QVLMKKATTKAKDLKKKTSGLAENGNVESP----SNEKRRKKR---KFP---------SR 464
K+ + D+K T+ E GN + P NEK KK K P ++
Sbjct: 640 ---TKRKAPEENDVKDNTAK-KEGGNEKMPKKKGGNEKTPKKGGNVKAPKKKGGNEKAAK 695
Query: 465 EEISKVREEKRKTLREKVSSKKAGSK 490
E+ + +E ++K ++KV+ KKA K
Sbjct: 696 EKGANEKEPEKKAQKKKVAIKKAHMK 721
>gi|320169159|gb|EFW46058.1| nucleolar family member protein [Capsaspora owczarzaki ATCC 30864]
Length = 746
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 256/377 (67%), Positives = 307/377 (81%), Gaps = 2/377 (0%)
Query: 10 DEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
D F LP+ +EIE+E PPD LQ+RIK+ + VL++F L SR EY++ L DL
Sbjct: 190 DTFTLPSGQEIEKESLLPPDRVLLQQRIKDNIMVLADFAKLRDPERSRSEYMEVLTRDLT 249
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
YYGY+++L+G L+E+FP E++E +E+ E PRPI +RTNTLKTRRRDLA LINRGVNL
Sbjct: 250 LYYGYSDYLMGKLLELFPLGEIVEFLEANESPRPISIRTNTLKTRRRDLAQALINRGVNL 309
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
DP+ KWSKVGLV++DS VPIGATPEY+AG YM+QSASSFLPVMA+APQE ER++ M AAP
Sbjct: 310 DPIGKWSKVGLVIFDSPVPIGATPEYLAGHYMIQSASSFLPVMAMAPQEHERILTMCAAP 369
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGKT Y AALMKNTG+I+AN+ RL++L AN HRMG+TNTIVCNYDG PKV+G
Sbjct: 370 GGKTAYCAALMKNTGVIFANDASKDRLRALVANTHRMGITNTIVCNYDGRAFPKVMG--N 427
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPCSGTGVI+KD+SVKT+KS +DI +CS LQK+LILAAID VDANSK+GGYIV
Sbjct: 428 FDRVLLDAPCSGTGVIAKDQSVKTNKSDDDIMRCSTLQKELILAAIDSVDANSKTGGYIV 487
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTCSI V ENE VIDYAL+KR+VKLV GLDFG+ GF FRE RFHP++ +RRFYPHV
Sbjct: 488 YSTCSITVEENEWVIDYALRKRNVKLVETGLDFGQPGFKSFRERRFHPTVSLSRRFYPHV 547
Query: 370 HNMDGFFVAKLKKMSNS 386
HNMDGFFVAK KK+SN+
Sbjct: 548 HNMDGFFVAKFKKISNA 564
>gi|156121159|ref|NP_001095727.1| putative ribosomal RNA methyltransferase NOP2 [Bos taurus]
gi|151554602|gb|AAI49979.1| NOP2 protein [Bos taurus]
gi|154425735|gb|AAI51442.1| NOP2 protein [Bos taurus]
Length = 820
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 268/458 (58%), Positives = 337/458 (73%), Gaps = 15/458 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 210 LQINVDEE-EPFLLPPAGEVEQDTQAP-DLQRVHKRIQDIVGVLHDFGTQREEGRSRSEY 267
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 268 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 327
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 328 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 387
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN I+ +YDG +
Sbjct: 388 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQ 447
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 448 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 505
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 506 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 565
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS----------KKTSAGPQPSETVEQQTPESNVSN 410
TRRFYPH HNMDGFF+AK KK SNS T P Q TP+S +
Sbjct: 566 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSATSTPTNPDLPNVNGQVTPKSESGS 625
Query: 411 GDKKTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVE 448
K ++Q L K+ K +K+ +G+++ + E
Sbjct: 626 PSTKKAGQAKQRLQKQQHPKKSSFQKQ-NGISKGTDTE 662
>gi|296487127|tpg|DAA29240.1| TPA: nucleolar protein 1, 120kDa [Bos taurus]
Length = 820
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/458 (58%), Positives = 337/458 (73%), Gaps = 15/458 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 210 LQINVDEE-EPFLLPPAGEVEQDTQAP-DLQRVHKRIQDIVGVLRDFGTQREEGRSRSEY 267
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 268 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 327
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 328 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 387
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN I+ +YDG +
Sbjct: 388 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQ 447
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 448 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 505
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 506 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 565
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS----------KKTSAGPQPSETVEQQTPESNVSN 410
TRRFYPH HNMDGFF+AK KK SNS T P Q TP+S +
Sbjct: 566 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSATSTPTNPDLPNVNGQVTPKSESGS 625
Query: 411 GDKKTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVE 448
K ++Q L K+ K +K+ +G+++ + E
Sbjct: 626 PSTKKAGQAKQRLQKQQHPKKSSFQKQ-NGISKGTDTE 662
>gi|417404787|gb|JAA49130.1| Putative trna and rrna cytosine-c5-methylase nucleolar protein
nol1/nop2 [Desmodus rotundus]
Length = 814
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/433 (60%), Positives = 327/433 (75%), Gaps = 5/433 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP E+E++ Q P DL + +RI++IV VL +FK ++G SR EY
Sbjct: 211 LQINVDEE-ELFVLPPAGEMEQDAQTP-DLQRVHKRIQDIVGVLRDFKTQREEGRSRAEY 268
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 269 VHRLQRDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 328
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 329 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 388
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 389 RILDMCCAPGGKTSYIAQLMKNTGVILANDASAERLKSVVGNLHRLGVTNTIISHYDGRQ 448
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTG+ISKD +VKT+K +D+ +C++LQK+L+L+AID V+A
Sbjct: 449 FPKVIG--GFDRVLLDAPCSGTGIISKDPAVKTNKDEKDVLRCAHLQKELLLSAIDSVNA 506
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 507 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 566
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-KKTSAGPQPSETVEQQTPESNVSNGDKKTEENS 419
TRRFYPH HNMDGFF+AK KK SNS ++ A P S P+ + G + S
Sbjct: 567 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQAAPGNSAASTPTNPDLSDLKGQVTPDPES 626
Query: 420 EQVLMKKATTKAK 432
KKA K
Sbjct: 627 SSQPAKKAKVTVK 639
>gi|320169127|gb|EFW46026.1| ribosomal RNA small subunit methyltransferase b [Capsaspora
owczarzaki ATCC 30864]
Length = 732
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 256/377 (67%), Positives = 307/377 (81%), Gaps = 2/377 (0%)
Query: 10 DEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
D F LP+ +EIE+E PPD LQ+RIK+ + VL++F L SR EY++ L DL
Sbjct: 221 DTFTLPSGQEIEKESLLPPDRVLLQQRIKDNIMVLADFAKLRDPERSRSEYMEVLTRDLT 280
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
YYGY+++L+G L+E+FP E++E +E+ E PRPI +RTNTLKTRRRDLA LINRGVNL
Sbjct: 281 LYYGYSDYLMGKLLELFPLGEIVEFLEANESPRPISIRTNTLKTRRRDLAQALINRGVNL 340
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
DP+ KWSKVGLV++DS VPIGATPEY+AG YM+QSASSFLPVMA+APQE ER++ M AAP
Sbjct: 341 DPIGKWSKVGLVIFDSPVPIGATPEYLAGHYMIQSASSFLPVMAMAPQEHERILTMCAAP 400
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGKT Y AALMKNTG+I+AN+ RL++L AN HRMG+TNTIVCNYDG PKV+G
Sbjct: 401 GGKTAYCAALMKNTGVIFANDASKDRLRALVANTHRMGITNTIVCNYDGRAFPKVMG--N 458
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPCSGTGVI+KD+SVKT+KS +DI +CS LQK+LILAAID VDANSK+GGYIV
Sbjct: 459 FDRVLLDAPCSGTGVIAKDQSVKTNKSDDDIMRCSTLQKELILAAIDSVDANSKTGGYIV 518
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTCSI V ENE VIDYAL+KR+VKLV GLDFG+ GF FRE RFHP++ +RRFYPHV
Sbjct: 519 YSTCSITVEENEWVIDYALRKRNVKLVETGLDFGQPGFKSFRERRFHPTVSLSRRFYPHV 578
Query: 370 HNMDGFFVAKLKKMSNS 386
HNMDGFFVAK KK+SN+
Sbjct: 579 HNMDGFFVAKFKKISNA 595
>gi|410963633|ref|XP_003988368.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Felis
catus]
Length = 820
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/464 (58%), Positives = 344/464 (74%), Gaps = 18/464 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP+ E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 214 LQINVDEE-EPFVLPSAGEMEQDAQAP-DLQRIHKRIQDIVAVLRDFGTQREEGRSRSEY 271
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 272 LHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 331
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 332 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 391
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 392 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 451
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 452 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 509
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 510 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 569
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-----KKTSAGPQPS-----ETVEQQTPESNVSN 410
TRRFYPH HNMDGFF+AK KK SNS SA P+ E +Q TP+ S+
Sbjct: 570 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSAASTPTNLDLPEVKDQMTPKPKGSS 629
Query: 411 GDKKTEE---NSEQVLMKKATTKAKDLKKKTSGLAENGNVESPS 451
K ++Q L K+ K +K+ +G+++ + SP+
Sbjct: 630 YPAKKARVAVKAKQQLQKRQHPKKASFQKQ-NGISKGTDSSSPT 672
>gi|384252054|gb|EIE25531.1| NOL1/NOP2/sun family putative RNA met [Coccomyxa subellipsoidea
C-169]
Length = 461
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/392 (66%), Positives = 318/392 (81%), Gaps = 2/392 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI++E + P+ +E+ P DL + RRIKE+ RVL F+DL ++G SR EY
Sbjct: 6 IQTNIQQEIEAG--PSILPGADEEAGPLDLSAVLRRIKEVARVLDKFQDLREEGRSRSEY 63
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
++QLK DL YYGYN F++ L+ MF E +EL+E+ E RPI LRTNTLKTRRR+LA
Sbjct: 64 MEQLKKDLEEYYGYNRFMLETLLGMFSVAEALELVEANEGRRPITLRTNTLKTRRRELAA 123
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGLVVY+S VP+GATPEYMAG YMLQ ASSFLPVMALAPQE E
Sbjct: 124 ALINRGVNLDPIGKWSKVGLVVYESNVPVGATPEYMAGHYMLQGASSFLPVMALAPQEGE 183
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+V+DMAAAPGGKTTYIAALM+N+G+++ANE+ RLKS+ NL RMGVTNTIV NYDG +
Sbjct: 184 QVLDMAAAPGGKTTYIAALMRNSGIVFANEVNPLRLKSIQGNLQRMGVTNTIVSNYDGRD 243
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPK++G N+VDR LLDAPCSGTGV+SKD +VK +KS +I KC++LQKQL+LAAID+VDA
Sbjct: 244 LPKMMGTNSVDRALLDAPCSGTGVVSKDPTVKANKSQAEIWKCAHLQKQLLLAAIDLVDA 303
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGYIVYSTCSIMV ENE V++Y L+KR VK+VP GLDFGR G++R+RE RFHPSL
Sbjct: 304 GSKTGGYIVYSTCSIMVEENENVVNYVLRKRHVKVVPTGLDFGRPGYMRYREFRFHPSLA 363
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAG 392
++RRFYPHVHN+DGFFV KLKK++N K S G
Sbjct: 364 ESRRFYPHVHNLDGFFVCKLKKVANGPKDSRG 395
>gi|149712409|ref|XP_001496238.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Equus
caballus]
Length = 810
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 255/386 (66%), Positives = 311/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP E+E++ Q PPDL + +RI++IV VL +F ++G SR EY
Sbjct: 206 LQINVDEE-EPFVLPPAGEMEQDAQ-PPDLQRVHKRIQDIVAVLRDFGTQREEGRSRSEY 263
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 264 LHRLRKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 323
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 324 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 383
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTIV +YDG +
Sbjct: 384 RVLDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIVSHYDGRQ 443
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTG+ISKD +VKT+K +D+ +C++LQK+L+L+AID V+A
Sbjct: 444 FPKVVG--GFDRVLLDAPCSGTGIISKDPAVKTNKDEKDVLRCAHLQKELLLSAIDSVNA 501
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 502 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 561
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 562 STRRFYPHTHNMDGFFIAKFKKFSNS 587
>gi|345791651|ref|XP_854432.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Canis
lupus familiaris]
Length = 814
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 254/386 (65%), Positives = 312/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 209 LQINVDEE-ESFVLPLPGEMEQDAQAP-DLQRIHKRIQDIVGVLRDFGTQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 267 LHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG+YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGYYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 505 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
>gi|426225666|ref|XP_004006984.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Ovis aries]
Length = 820
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/458 (58%), Positives = 337/458 (73%), Gaps = 16/458 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE E LP E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 211 LQINVDEE--EPLLPPAGEVEQDTQAP-DLQCVHKRIQDIVGVLRDFGTQREEGRSRSEY 267
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 268 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 327
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 328 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 387
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN I+ +YDG +
Sbjct: 388 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQ 447
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 448 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 505
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 506 SSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 565
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS----------KKTSAGPQPSETVEQQTPESNVSN 410
TRRFYPH HNMDGFF+AK KK SNS T P Q TP+S +
Sbjct: 566 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSATSTPTNPDLPNVNGQVTPKSESGS 625
Query: 411 GDKKTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVE 448
K ++Q L K+ K +K+ +G+++ + E
Sbjct: 626 PSTKKAGQAKQRLQKQQHPKKSSFQKQ-NGISKGTDTE 662
>gi|344278108|ref|XP_003410838.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Loxodonta
africana]
Length = 825
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 256/386 (66%), Positives = 311/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP EE+E+ Q DL + +RI++IV VL +F ++G SR EY
Sbjct: 212 LQINVDEE-EPFVLPPAEEMEQGAQAS-DLQRVHKRIQDIVGVLRDFSTQREEGRSRSEY 269
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 270 LNRLQKDLAAYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 329
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 330 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 389
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 390 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 449
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 450 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 507
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 508 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 567
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 568 STRRFYPHTHNMDGFFIAKFKKFSNS 593
>gi|426225668|ref|XP_004006985.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Ovis aries]
Length = 853
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/458 (58%), Positives = 337/458 (73%), Gaps = 16/458 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE E LP E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 244 LQINVDEE--EPLLPPAGEVEQDTQAP-DLQCVHKRIQDIVGVLRDFGTQREEGRSRSEY 300
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 301 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 360
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 361 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 420
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN I+ +YDG +
Sbjct: 421 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQ 480
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 481 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 538
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 539 SSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 598
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS----------KKTSAGPQPSETVEQQTPESNVSN 410
TRRFYPH HNMDGFF+AK KK SNS T P Q TP+S +
Sbjct: 599 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSATSTPTNPDLPNVNGQVTPKSESGS 658
Query: 411 GDKKTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVE 448
K ++Q L K+ K +K+ +G+++ + E
Sbjct: 659 PSTKKAGQAKQRLQKQQHPKKSSFQKQ-NGISKGTDTE 695
>gi|346644842|ref|NP_001231175.1| NOP2 nucleolar protein homolog [Sus scrofa]
Length = 821
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 254/386 (65%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 208 LQINVDEE-EPFVLPLAGEMEQDAQAP-DLQRVHKRIQDIVGVLRDFGTQREEGRSRAEY 265
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 266 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 325
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 326 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 385
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ NYDG +
Sbjct: 386 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISNYDGRQ 445
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTG+ISKD +VKT+K +DI +C++LQK+L+L+AID V A
Sbjct: 446 FPKVVG--GFDRVLLDAPCSGTGIISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVSA 503
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 504 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 563
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 564 STRRFYPHTHNMDGFFIAKFKKFSNS 589
>gi|296211182|ref|XP_002752299.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Callithrix jacchus]
Length = 810
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/386 (65%), Positives = 311/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 208 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 264
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 265 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 324
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 325 TLINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 384
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM +APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 385 RILDMCSAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 444
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 445 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 502
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 503 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 562
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 563 STRRFYPHTHNMDGFFIAKFKKFSNS 588
>gi|354467281|ref|XP_003496098.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2
[Cricetulus griseus]
gi|344242424|gb|EGV98527.1| Putative ribosomal RNA methyltransferase NOP2 [Cricetulus griseus]
Length = 790
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 263/417 (63%), Positives = 321/417 (76%), Gaps = 11/417 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP EE+E++ Q P DL + +RI++IV VL NF ++G SR EY
Sbjct: 191 LQINVDDE-EAFVLPPAEEMEQDAQAP-DLQRVHKRIQDIVGVLRNFGAQREEGRSRSEY 248
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+G L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 249 LNRLQKDLATYYSYGDFLLGKLMEIFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 308
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 309 ALINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 368
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 369 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 428
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +D+ +C++LQK+L+L+AID V+A
Sbjct: 429 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDVLRCAHLQKELLLSAIDSVNA 486
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 487 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 546
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSN 410
TRRFYPH HNMDGFF+AK KK SNS +A P E +Q TP S S
Sbjct: 547 STRRFYPHTHNMDGFFIAKFKKFSNSIPQPHTGNVAAAIPSEPELKDQATPLSENSG 603
>gi|296211184|ref|XP_002752300.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Callithrix jacchus]
Length = 843
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/386 (65%), Positives = 311/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 241 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 297
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 298 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 357
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 358 TLINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 417
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM +APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 418 RILDMCSAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 477
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 478 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 535
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 536 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 595
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 596 STRRFYPHTHNMDGFFIAKFKKFSNS 621
>gi|348555036|ref|XP_003463330.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Cavia porcellus]
Length = 800
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 254/386 (65%), Positives = 310/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE EF LP E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 203 LQINVDEE--EFILPPAGEMEQDTQAP-DLQRVHKRIQDIVGVLRDFGVQREEGRSRSEY 259
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+G L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 260 LNRLQKDLATYYSYGDFLLGKLMELFPVSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 319
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 320 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 379
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN I+ +YDG +
Sbjct: 380 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQ 439
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +D+ +C++LQK+L+L+AID V+A
Sbjct: 440 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDVLRCAHLQKELLLSAIDSVNA 497
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 498 ASKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 557
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 558 STRRFYPHTHNMDGFFIAKFKKFSNS 583
>gi|403303158|ref|XP_003942211.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Saimiri
boliviensis boliviensis]
Length = 812
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 311/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP ++E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGQMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM +APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 387 RILDMCSAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCS+MV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSVMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
>gi|432111851|gb|ELK34893.1| Putative ribosomal RNA methyltransferase NOP2 [Myotis davidii]
Length = 825
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/393 (64%), Positives = 312/393 (79%), Gaps = 10/393 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEE-------KQQPPDLPNLQRRIKEIVRVLSNFKDLSQK 53
+Q+N+ EE + F LP E+E++ + Q PDL + +RI++IV VL +F ++
Sbjct: 210 LQINLDEE-EPFVLPPAGEMEQDILPVKGPRAQAPDLQRIHKRIQDIVGVLRDFGTQREE 268
Query: 54 GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT 113
G SR EY+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKT
Sbjct: 269 GRSRAEYLHRLQRDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKT 328
Query: 114 RRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMA 173
RRRDLA LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMA
Sbjct: 329 RRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMA 388
Query: 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233
LAPQE ER++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+
Sbjct: 389 LAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTII 448
Query: 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA 293
+YDG + PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+
Sbjct: 449 SHYDGRQFPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLS 506
Query: 294 AIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREH 353
AID V+A SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE
Sbjct: 507 AIDSVNATSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRER 566
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
RFHP+L TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 567 RFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNS 599
>gi|444510915|gb|ELV09762.1| Putative ribosomal RNA methyltransferase NOP2 [Tupaia chinensis]
Length = 803
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 258/406 (63%), Positives = 317/406 (78%), Gaps = 4/406 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ E D F LP E+E++ DL + +RI++IV VL NF ++G SR EY
Sbjct: 204 LQINVNGE-DPFVLPPAGEMEQDILPAQDLQRVHKRIQDIVEVLRNFGTQREEGRSRSEY 262
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 263 LNRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 322
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 323 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 382
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG
Sbjct: 383 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTILSHYDGRR 442
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K+ +DI +C++LQK+L+L+AID V+A
Sbjct: 443 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKNEKDILRCAHLQKELLLSAIDSVNA 500
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGY+VY TCS+ V ENE V+DYALKKR+V+LVP GLDFG++GF RF+E RFHP+L
Sbjct: 501 NSKTGGYLVYCTCSVTVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQERRFHPTLR 560
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPES 406
TRRFYPH HNMDGFF+AK KK SNS + PS T Q TP+S
Sbjct: 561 STRRFYPHTHNMDGFFIAKFKKFSNSVPQAQAGLPS-TKGQDTPKS 605
>gi|332249235|ref|XP_003273769.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Nomascus leucogenys]
Length = 809
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 259/427 (60%), Positives = 322/427 (75%), Gaps = 23/427 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 207 LQINVDEEP--FVLPPAGETEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 263
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 264 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 323
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 324 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 383
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 384 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 443
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 444 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 501
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 502 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 561
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
TRRFYPH HNMDGFF+AK KK SNS P+S N + T N++
Sbjct: 562 STRRFYPHTHNMDGFFIAKFKKFSNS----------------IPQSQTGNSETATPTNAD 605
Query: 421 --QVLMK 425
QV+ K
Sbjct: 606 LPQVIPK 612
>gi|441670400|ref|XP_004092200.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Nomascus
leucogenys]
Length = 813
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 259/427 (60%), Positives = 322/427 (75%), Gaps = 23/427 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 211 LQINVDEEP--FVLPPAGETEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 267
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 268 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 327
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 328 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 387
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 388 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 447
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 448 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 505
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 506 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 565
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
TRRFYPH HNMDGFF+AK KK SNS P+S N + T N++
Sbjct: 566 STRRFYPHTHNMDGFFIAKFKKFSNS----------------IPQSQTGNSETATPTNAD 609
Query: 421 --QVLMK 425
QV+ K
Sbjct: 610 LPQVIPK 616
>gi|300796393|ref|NP_001178714.1| putative ribosomal RNA methyltransferase NOP2 [Rattus norvegicus]
Length = 772
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/386 (65%), Positives = 309/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP + +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 189 LQINVEEE-EAFVLPPAGQTDQDAQTP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRTEY 246
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ QL+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 247 LSQLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 306
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 307 ALINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 366
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTIV +YDG +
Sbjct: 367 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIVSHYDGRQ 426
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 427 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 484
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 485 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 544
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 545 ATRRFYPHTHNMDGFFIAKFKKFSNS 570
>gi|440895654|gb|ELR47792.1| Putative ribosomal RNA methyltransferase NOP2 [Bos grunniens mutus]
Length = 823
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 309/386 (80%), Gaps = 3/386 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP E+E++ DL + +RI++IV VL +F ++G SR EY
Sbjct: 212 LQINVDEE-EPFLLPPAGEVEQDILPEQDLQRVHKRIQDIVGVLRDFGTQREEGRSRSEY 270
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 271 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 330
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 331 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 390
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN I+ +YDG +
Sbjct: 391 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQ 450
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 451 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 508
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 509 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 568
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 569 STRRFYPHTHNMDGFFIAKFKKFSNS 594
>gi|145344001|ref|XP_001416528.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576754|gb|ABO94821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 485
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/385 (66%), Positives = 313/385 (81%), Gaps = 6/385 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++ NI+++ D ++LP + +EE PDL +Q RI+EIVRVL +FK+ + G SR +Y
Sbjct: 99 LETNIQDD-DVYQLP---DSDEEDDGIPDLSAIQMRIQEIVRVLKDFKNRRESGKSRNDY 154
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V++L DL +YYGYN FLI ++ F E MEL+E+ E+ RP+ +RTNTLK RRR+LA+
Sbjct: 155 VERLTADLATYYGYNSFLIRYFLDTFSVDETMELLEANEQQRPVTIRTNTLKVRRRELAE 214
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGL+VYDS+VPIGATPEYMAG Y+LQSASSFLP MALAPQE E
Sbjct: 215 SLINRGVNLDPVGKWSKVGLLVYDSRVPIGATPEYMAGHYILQSASSFLPCMALAPQEGE 274
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMAAAPGGKTTY+AALM+NTG+I+ANE + RL SL ANL R+G TN+ VCNYDG
Sbjct: 275 RVLDMAAAPGGKTTYLAALMRNTGMIFANEYQKKRLNSLVANLQRLGCTNSTVCNYDGRA 334
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKV+G VDRVLLDAPCSGTGVI+KD SVKTSKS EDI KC++LQK+L++AAID DA
Sbjct: 335 LPKVIG--HVDRVLLDAPCSGTGVIAKDSSVKTSKSAEDIAKCAHLQKELLVAAIDCCDA 392
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGY+VYSTCSI V ENEAV+DY L+KRDVK+V GL+FGR+GF +R FHPS+E
Sbjct: 393 NSKTGGYVVYSTCSIAVEENEAVVDYILRKRDVKIVSSGLEFGRKGFTSYRGKNFHPSVE 452
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN 385
RRFYPHVHNMDGFFV KLKK+SN
Sbjct: 453 MARRFYPHVHNMDGFFVCKLKKLSN 477
>gi|109095234|ref|XP_001105884.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 2 [Macaca mulatta]
gi|109095236|ref|XP_001106035.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 4 [Macaca mulatta]
Length = 811
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 309/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 209 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 265
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 266 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 325
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 326 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 385
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 386 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 445
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 446 FPKVVG--GFDRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNA 503
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 504 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 563
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
RRFYPH HNMDGFF+AK KK SNS
Sbjct: 564 SARRFYPHTHNMDGFFIAKFKKFSNS 589
>gi|109095238|ref|XP_001105964.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 3 [Macaca mulatta]
Length = 807
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 309/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 205 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 261
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 262 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 321
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 322 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 381
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 382 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 441
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 442 FPKVVG--GFDRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNA 499
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 500 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 559
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
RRFYPH HNMDGFF+AK KK SNS
Sbjct: 560 SARRFYPHTHNMDGFFIAKFKKFSNS 585
>gi|301773766|ref|XP_002922311.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Ailuropoda melanoleuca]
Length = 820
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 253/386 (65%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F L E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 212 LQINVDEE-EPFVLSPAGEMEQDAQAP-DLQRIHKRIQDIVGVLRDFGTQREEGRSRSEY 269
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 270 LHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 329
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 330 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 389
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 390 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 449
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 450 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 507
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 508 MSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 567
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 568 STRRFYPHTHNMDGFFIAKFKKFSNS 593
>gi|380813114|gb|AFE78431.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
gi|383418655|gb|AFH32541.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
gi|384947276|gb|AFI37243.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
Length = 807
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 309/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 205 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 261
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 262 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 321
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 322 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 381
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 382 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 441
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 442 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 499
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 500 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 559
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
RRFYPH HNMDGFF+AK KK SNS
Sbjct: 560 SARRFYPHTHNMDGFFIAKFKKFSNS 585
>gi|355707602|gb|AES03006.1| NOP2 nucleolar protein-like protein [Mustela putorius furo]
Length = 604
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/386 (65%), Positives = 311/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP E+E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 216 LQINVDEE-ETFVLPPAGEMEQDAQAP-DLQRIHKRIQDIVGVLRDFGTQREEGRSRSEY 273
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 274 LHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 333
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 334 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 393
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 394 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 453
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 454 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 511
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 512 MSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 571
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 572 STRRFYPHTHNMDGFFIAKFKKFSNS 597
>gi|109095240|ref|XP_001105811.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 1 [Macaca mulatta]
Length = 844
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 309/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 242 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 298
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 299 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 358
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 359 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 418
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 419 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 478
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 479 FPKVVG--GFDRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNA 536
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 537 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 596
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
RRFYPH HNMDGFF+AK KK SNS
Sbjct: 597 SARRFYPHTHNMDGFFIAKFKKFSNS 622
>gi|449669945|ref|XP_002159649.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Hydra magnipapillata]
Length = 715
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 248/378 (65%), Positives = 306/378 (80%), Gaps = 2/378 (0%)
Query: 8 ESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
ES+ F LP+ +EIE+E + DL + +RIK+ + VLSNFK Q SR EY+ L D
Sbjct: 170 ESEVFVLPSGQEIEKENNENTDLTVIHQRIKDNLHVLSNFKKYRQPNRSRSEYLHLLLRD 229
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L +YY YNE+ + +L+ +FP E++E +E+ E RPI +R+N+LKTRRRDLA LINRGV
Sbjct: 230 LMTYYSYNEYFMESLINLFPGGEILEFLEACEVKRPITIRSNSLKTRRRDLAQALINRGV 289
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
NLDP+ KWSKVGLVVYDS VPIGATPEY+AG YM+Q ASS LPV+AL+PQE ER++DM +
Sbjct: 290 NLDPIGKWSKVGLVVYDSSVPIGATPEYLAGHYMIQGASSMLPVIALSPQENERILDMCS 349
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTTYI +LMKNTG+I AN+ KA RLKSL N+HR+G+TNTIVCNYDG PKV+G
Sbjct: 350 APGGKTTYIGSLMKNTGVIVANDAKAERLKSLIGNIHRLGITNTIVCNYDGRSFPKVMG- 408
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
DRVLLDAPCSGTGVISKDE VKT+KS +DIQ+CS++QK+L+LAAID VDA SK+GGY
Sbjct: 409 -GFDRVLLDAPCSGTGVISKDEQVKTNKSEKDIQRCSHVQKELLLAAIDSVDAKSKTGGY 467
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
IVYSTCSIMV ENE V+DYAL +R+VKLVP G+DFG++G+ R+R+ RFH ++ TRRFYP
Sbjct: 468 IVYSTCSIMVEENEWVVDYALSRRNVKLVPTGIDFGKEGYTRYRDKRFHHTMNLTRRFYP 527
Query: 368 HVHNMDGFFVAKLKKMSN 385
H HNMDGFFVAKLKK +N
Sbjct: 528 HTHNMDGFFVAKLKKFAN 545
>gi|297690949|ref|XP_002822861.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pongo abelii]
Length = 814
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E E++ Q P DL + RRI++IV +L +F ++G SR EY
Sbjct: 212 LQINVDEEP--FVLPPAGETEQDAQAP-DLQRVHRRIQDIVGILRDFGAQREEGRSRSEY 268
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 269 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 328
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG Y+LQ ASS LPVMALAPQE E
Sbjct: 329 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYILQGASSMLPVMALAPQEHE 388
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 389 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 448
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 449 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 506
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 507 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 566
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 567 STRRFYPHTHNMDGFFIAKFKKFSNS 592
>gi|395743839|ref|XP_002822860.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Pongo abelii]
Length = 810
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E E++ Q P DL + RRI++IV +L +F ++G SR EY
Sbjct: 208 LQINVDEEP--FVLPPAGETEQDAQAP-DLQRVHRRIQDIVGILRDFGAQREEGRSRSEY 264
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 265 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 324
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG Y+LQ ASS LPVMALAPQE E
Sbjct: 325 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYILQGASSMLPVMALAPQEHE 384
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 385 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 444
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 445 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 502
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 503 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 562
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 563 STRRFYPHTHNMDGFFIAKFKKFSNS 588
>gi|76150623|ref|NP_006161.2| putative ribosomal RNA methyltransferase NOP2 isoform 1 [Homo
sapiens]
gi|76150625|ref|NP_001028886.1| putative ribosomal RNA methyltransferase NOP2 isoform 1 [Homo
sapiens]
gi|112180609|gb|AAH65257.1| NOP2 nucleolar protein homolog (yeast) [Homo sapiens]
gi|193786365|dbj|BAG51648.1| unnamed protein product [Homo sapiens]
Length = 808
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 206 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 262
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 263 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 322
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 323 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 382
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 383 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 442
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 443 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 500
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 501 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 560
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 561 STRRFYPHTHNMDGFFIAKFKKFSNS 586
>gi|291392735|ref|XP_002712919.1| PREDICTED: nucleolar protein 1, 120kDa [Oryctolagus cuniculus]
Length = 809
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/399 (63%), Positives = 314/399 (78%), Gaps = 7/399 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP ++E++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 206 LQINV-DEDEPFVLPPDGQMEQDAQAP-DLQRIHKRIQDIVGVLRDFGAQREEGRSRAEY 263
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 264 LSRLRKDLATYYSYGDFLLSKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 323
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 324 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 383
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ ++DG
Sbjct: 384 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHHDGRH 443
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 444 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 501
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCS+MV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 502 ASKTGGYLVYCTCSVMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 561
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETV 399
TRRFYPH HNMDGFF+AK KK SNS PQP ++
Sbjct: 562 STRRFYPHTHNMDGFFIAKFKKFSNSVPQ---PQPGDSA 597
>gi|390357598|ref|XP_787141.3| PREDICTED: putative ribosomal RNA methyltransferase nop2-like
[Strongylocentrotus purpuratus]
Length = 915
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 243/385 (63%), Positives = 311/385 (80%), Gaps = 3/385 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q++I +++ F+LP+ EEIE+E +P DL + +RIKE++ VL +FK+ ++ SR+EY
Sbjct: 324 LQISI-SQTETFQLPSGEEIEKEASEPTDLSMVHQRIKEVMEVLGDFKNRREEDRSRQEY 382
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V L+ DL +YY YNEFLI ++++FP EL+E +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 383 VTMLRQDLMTYYSYNEFLITKIMDLFPLSELIEFLEANEVARPVTIRTNSLKTRRRDLAQ 442
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KW+KVGLV+YDS VP+GATPEYMAG Y+LQ ASSFLPVMALAP E E
Sbjct: 443 ALINRGVNLDPVGKWTKVGLVIYDSAVPVGATPEYMAGHYVLQGASSFLPVMALAPHEGE 502
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+++DM A+PG KTTYIAALMKNTG+++AN+ R+ +L NLHR G+TNT++CN DG
Sbjct: 503 KILDMCASPGSKTTYIAALMKNTGMLFANDANKKRVSALVGNLHRCGITNTVICNEDGKS 562
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVI+KD +VK SK DIQ+CS+LQK+LILAAID +DA
Sbjct: 563 FPKVMG--GFDRVLLDAPCSGTGVIAKDTAVKLSKDEGDIQRCSHLQKELILAAIDSIDA 620
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGY+VYSTCSIMV ENE V+DYALKKR+V+LVP G+DFG+ GF RF+ FHPSL+
Sbjct: 621 NSKTGGYLVYSTCSIMVEENEWVVDYALKKRNVRLVPTGIDFGQDGFSRFKARHFHPSLK 680
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN 385
+RR YPH HNMDGF+ AKLKK+SN
Sbjct: 681 LSRRIYPHTHNMDGFYFAKLKKLSN 705
>gi|385198059|ref|NP_001245237.1| putative ribosomal RNA methyltransferase NOP2 isoform 2 [Homo
sapiens]
gi|146289861|sp|P46087.2|NOP2_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase NOP2;
AltName: Full=Nucleolar protein 1; AltName:
Full=Nucleolar protein 2 homolog; AltName:
Full=Proliferating-cell nucleolar antigen p120; AltName:
Full=Proliferation-associated nucleolar protein p120
gi|12653741|gb|AAH00656.1| NOP2 protein [Homo sapiens]
gi|118764015|gb|AAI28184.1| NOP2 protein [Homo sapiens]
Length = 812
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
>gi|402884916|ref|XP_003905916.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Papio
anubis]
Length = 724
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 309/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 209 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 265
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 266 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 325
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 326 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 385
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 386 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 445
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 446 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 503
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 504 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 563
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
RRFYPH HNMDGFF+AK KK SNS
Sbjct: 564 SARRFYPHTHNMDGFFIAKFKKFSNS 589
>gi|385198061|ref|NP_001245238.1| putative ribosomal RNA methyltransferase NOP2 isoform 3 [Homo
sapiens]
gi|76779860|gb|AAI06073.1| NOP2 protein [Homo sapiens]
Length = 845
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 243 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 299
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 300 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 359
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 360 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 419
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 420 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 479
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 480 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 537
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 538 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 597
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 598 STRRFYPHTHNMDGFFIAKFKKFSNS 623
>gi|81879892|sp|Q922K7.1|NOP2_MOUSE RecName: Full=Putative ribosomal RNA methyltransferase NOP2;
AltName: Full=Nucleolar protein 1; AltName:
Full=Nucleolar protein 2 homolog; AltName:
Full=Proliferating-cell nucleolar antigen p120; AltName:
Full=Proliferation-associated nucleolar protein p120
gi|13938070|gb|AAH07151.1| NOP2 nucleolar protein homolog (yeast) [Mus musculus]
Length = 793
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/454 (58%), Positives = 337/454 (74%), Gaps = 16/454 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP E +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPPAGETDQDGQAP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 LLINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSNGDK 413
TRRFYPH HNMDGFF+AK KK SNS +A P + +Q TP+S NG +
Sbjct: 550 STRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKSE--NGSQ 607
Query: 414 KTEENSEQVLMKKATTKAKDLKK---KTSGLAEN 444
T++ V K+ + KK K +G+A+
Sbjct: 608 PTKKARGAVKAKQQLLRQPHSKKPFQKLNGIAKG 641
>gi|327283575|ref|XP_003226516.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Anolis carolinensis]
Length = 707
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/387 (65%), Positives = 314/387 (81%), Gaps = 6/387 (1%)
Query: 1 MQLNIREESDE-FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKE 59
+QLN+ E+DE F LP+ +EIE++ Q P DL + +RIK+ + VL +F ++G SR+E
Sbjct: 211 LQLNV--ETDERFVLPSGQEIEKDAQAP-DLQLIHQRIKDNIEVLQDFSTKREEGHSRQE 267
Query: 60 YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
Y+ L+ DL +YY Y++FLIG ++++FP EL++ +ES E PRP+ LRTNTLKTRRRDLA
Sbjct: 268 YLSLLRRDLAAYYSYSDFLIGKMMDLFPLSELVDFLESNEVPRPVTLRTNTLKTRRRDLA 327
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE
Sbjct: 328 QALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGQYMLQGASSLLPVMALAPQEN 387
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
ER++DM APGGKT+YIA LMKNTG+I AN+ A RL S+ NLHR+GVTNT+V + DG
Sbjct: 388 ERILDMCCAPGGKTSYIAQLMKNTGVILANDSNADRLHSVVGNLHRLGVTNTVVSHCDGR 447
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
+ PKVLG DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+LIL+AID V+
Sbjct: 448 QFPKVLG--GFDRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELILSAIDSVN 505
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
A S++GGYIVY TCS+MV ENE V+DYALKKR+V+LVP GLDFG++GF RF+E RFHPSL
Sbjct: 506 AASETGGYIVYCTCSVMVEENEWVVDYALKKRNVRLVPTGLDFGKEGFTRFKERRFHPSL 565
Query: 360 EKTRRFYPHVHNMDGFFVAKLKKMSNS 386
+ TRRFYPH HNMDGFFVAKLKK SN+
Sbjct: 566 KSTRRFYPHTHNMDGFFVAKLKKFSNA 592
>gi|126340043|ref|XP_001369382.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2
[Monodelphis domestica]
Length = 727
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 254/404 (62%), Positives = 321/404 (79%), Gaps = 8/404 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ E+ ++F LPT +EIE++ Q P DL ++ +RI++IV VL +F ++G SR EY
Sbjct: 215 LQINV-EKDEKFVLPTGKEIEQDAQAP-DLQSVHQRIQDIVGVLRDFGSQREEGRSRTEY 272
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FLIG ++++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 273 LSRLRKDLATYYSYGDFLIGKIMDIFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 332
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG Y+LQ ASS LPV+ALAPQE E
Sbjct: 333 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYILQGASSMLPVIALAPQEHE 392
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ + DG
Sbjct: 393 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHDDGRH 452
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD SVKT+K +DI++C+++QK+L+L+AID V+A
Sbjct: 453 FPKVVG--GFDRVLLDAPCSGTGVISKDPSVKTNKDDKDIKRCAHIQKELLLSAIDSVNA 510
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGYIVY TCSI V ENE V++YALKKR+V+LVP GLDFG++GF FRE RFHP+L
Sbjct: 511 ASKTGGYIVYCTCSITVEENEWVVEYALKKRNVRLVPTGLDFGQEGFTHFRERRFHPTLR 570
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN----SKKTSAGPQPSETVE 400
TRRFYPH HNMDGFF+AK KK SN SKK+ A P ++++
Sbjct: 571 STRRFYPHTHNMDGFFIAKFKKFSNAIPQSKKSDAAANPEDSMD 614
>gi|158966689|ref|NP_620086.2| putative ribosomal RNA methyltransferase NOP2 [Mus musculus]
Length = 794
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/454 (58%), Positives = 336/454 (74%), Gaps = 16/454 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP E +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPPAGETDQDGQAP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 ALINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSNGDK 413
TRRFYPH HNMDGFF+AK KK SNS +A P + +Q TP+S NG +
Sbjct: 550 STRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKSE--NGSQ 607
Query: 414 KTEENSEQVLMKKATTKAKDLKK---KTSGLAEN 444
T++ V K+ + KK K +G+A+
Sbjct: 608 PTKKARGAVKAKQQLLRQPHSKKPFQKLNGIAKG 641
>gi|431905345|gb|ELK10390.1| Putative ribosomal RNA methyltransferase NOP2 [Pteropus alecto]
Length = 826
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/393 (63%), Positives = 310/393 (78%), Gaps = 10/393 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEE-------KQQPPDLPNLQRRIKEIVRVLSNFKDLSQK 53
+Q+N+ E + F LP+ E+E + Q PDL + +RI++IV VL +F ++
Sbjct: 214 LQINVDVE-EPFVLPSAGELEPDILSVRGPHAQAPDLQRVHKRIQDIVGVLRDFGTQREE 272
Query: 54 GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT 113
G SR EY+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKT
Sbjct: 273 GRSRAEYLHRLQRDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKT 332
Query: 114 RRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMA 173
RRRDLA LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMA
Sbjct: 333 RRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMA 392
Query: 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233
LAPQE ER++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+
Sbjct: 393 LAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTII 452
Query: 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA 293
+YDG + PKV+G DRVLLDAPCSGTG+ISKD +VKT+K +DI +C++LQK+L+L+
Sbjct: 453 SHYDGRQFPKVVG--GFDRVLLDAPCSGTGIISKDPAVKTNKDEKDILRCAHLQKELLLS 510
Query: 294 AIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREH 353
AID V+A SK+GGY++Y TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE
Sbjct: 511 AIDSVNAASKTGGYLIYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRER 570
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
RFHP+L TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 571 RFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNS 603
>gi|189422|gb|AAA36398.1| proliferating cell nuclear protein P120, partial [Homo sapiens]
Length = 869
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 224 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 280
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 281 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 340
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 341 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 400
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 401 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 460
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 461 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 518
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 519 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 578
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 579 STRRFYPHTHNMDGFFIAKFKKFSNS 604
>gi|74150573|dbj|BAE32311.1| unnamed protein product [Mus musculus]
Length = 732
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/454 (58%), Positives = 336/454 (74%), Gaps = 16/454 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP E +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPPAGETDQDGQAP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 ALINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSNGDK 413
TRRFYPH HNMDGFF+AK KK SNS +A P + +Q TP+S NG +
Sbjct: 550 STRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKSE--NGSQ 607
Query: 414 KTEENSEQVLMKKATTKAKDLKK---KTSGLAEN 444
T++ V K+ + KK K +G+A+
Sbjct: 608 PTKKARGAVKAKQQLLRQPHSKKPFQKLNGIAKG 641
>gi|397499212|ref|XP_003820353.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Pan paniscus]
gi|410046166|ref|XP_003952139.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Pan
troglodytes]
gi|410211966|gb|JAA03202.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259620|gb|JAA17776.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300876|gb|JAA29038.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410348610|gb|JAA40909.1| NOP2 nucleolar protein homolog [Pan troglodytes]
Length = 812
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+E RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
>gi|114643067|ref|XP_001162313.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pan troglodytes]
gi|397499214|ref|XP_003820354.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pan paniscus]
gi|410211964|gb|JAA03201.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259618|gb|JAA17775.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259622|gb|JAA17777.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300872|gb|JAA29036.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300874|gb|JAA29037.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410348608|gb|JAA40908.1| NOP2 nucleolar protein homolog [Pan troglodytes]
Length = 808
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 206 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 262
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 263 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 322
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 323 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 382
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 383 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 442
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 443 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 500
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+E RFHPSL
Sbjct: 501 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQERRFHPSLR 560
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 561 STRRFYPHTHNMDGFFIAKFKKFSNS 586
>gi|442751913|gb|JAA68116.1| Putative trna and rrna cytosine-c5-methylase nucleolar protein
nol1/nop2 [Ixodes ricinus]
Length = 528
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/428 (60%), Positives = 326/428 (76%), Gaps = 3/428 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
M+ NI ES+ F LP+ +EIE EK +PPDL + RIK+I+ VL +F + + G SR EY
Sbjct: 1 MKTNI-AESEIFTLPSGQEIEMEKAEPPDLAIISERIKDIIHVLGDFSNRREPGKSRSEY 59
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
++ LK DL YY YNEFL+ +++F P EL+E +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 60 LEVLKQDLCEYYSYNEFLMQKFMDLFSPAELIEFLEANEVNRPVTIRTNSLKTRRRDLAQ 119
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGL+VY+SQVP+GATPEY+AG Y+LQ A+S LPVMALAPQE E
Sbjct: 120 ALINRGVNLDPVGKWSKVGLIVYNSQVPVGATPEYLAGHYVLQGAASMLPVMALAPQENE 179
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM AAPGGKTT+IAA+MKNTGL++ANE+ R K++ NLHR+GV NTIVC+YDG +
Sbjct: 180 RILDMCAAPGGKTTHIAAIMKNTGLLFANELHQERCKAIIGNLHRLGVNNTIVCSYDGRK 239
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P+V + DRVLLDAPCSGTGV+SKD +VKT+K +DI +CS LQKQLILAAID D
Sbjct: 240 FPEV--VKGFDRVLLDAPCSGTGVVSKDPAVKTNKEEKDILRCSQLQKQLILAAIDCADC 297
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+ GYIVYSTCS+M ENE VIDYALKKR+VKLVP GLDFGR+G R+RE+RFHPSL
Sbjct: 298 SDNKPGYIVYSTCSVMPEENEWVIDYALKKRNVKLVPTGLDFGREGLTRYREYRFHPSLN 357
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
+TRRFYPH HNM+GFFVAKLKK SN+ +A + + + V ++K E + +
Sbjct: 358 RTRRFYPHAHNMEGFFVAKLKKFSNTIPLTAIKEEKTKEKDEKHVEKVDANNQKAEPSRK 417
Query: 421 QVLMKKAT 428
+VL +K +
Sbjct: 418 KVLKRKGS 425
>gi|287723|emb|CAA39119.1| P120 antigen [Homo sapiens]
Length = 855
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
>gi|120537962|gb|AAI29564.1| LOC100036868 protein [Xenopus laevis]
Length = 744
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 248/386 (64%), Positives = 312/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ E D F+LPT+EE+E+E PDL +Q RIK+IV VL NF G +R++Y
Sbjct: 235 IQLNVDSE-DPFQLPTEEELEKELSTAPDLSTMQERIKDIVGVLQNFAQRG-GGRTRQDY 292
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
++ LK DL +YY Y +++I L ++FP EL++ +E+ E RPI +RTNTLKTRRRDLA
Sbjct: 293 LKVLKKDLATYYSYGDYMIETLSDLFPVSELVDFLEACEVHRPITIRTNTLKTRRRDLAQ 352
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINR VNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPV+ALAPQE E
Sbjct: 353 ALINRSVNLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENE 412
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM APGGKT+YIA LMKNTG + AN+M A RL+S+ NLHR+GVTN I+ NYDG +
Sbjct: 413 RVLDMCCAPGGKTSYIAQLMKNTGSVVANDMNAERLRSVVGNLHRLGVTNCIISNYDGRQ 472
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ K+LG DRVLLDAPCSGTG+ISKD +VKT+KS++DIQ+C+++QK+L+L+AID +DA
Sbjct: 473 ISKILG--GFDRVLLDAPCSGTGIISKDPAVKTNKSVQDIQRCAHIQKELVLSAIDALDA 530
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S++GG++VY TCSI V ENE V+DYALKKR+VKLVP GLDFG++GFVRF+E RFHPSL
Sbjct: 531 QSQTGGFLVYCTCSITVEENECVVDYALKKRNVKLVPTGLDFGKEGFVRFKERRFHPSLR 590
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
+TRRFYPH HNMDGFF+AKL+K SN+
Sbjct: 591 QTRRFYPHTHNMDGFFIAKLRKFSNA 616
>gi|118764303|gb|AAI28185.1| NOP2 protein [Homo sapiens]
Length = 812
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 307/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE R HPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRLHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
>gi|189529666|ref|XP_001922354.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Danio
rerio]
Length = 739
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/494 (56%), Positives = 355/494 (71%), Gaps = 14/494 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI + +++F+LP + +E P DL + +RIK+ V VLSNF + ++G R EY
Sbjct: 206 VQANI-DTTEKFKLPGAADRAKEGLLPMDLKTIHQRIKDNVDVLSNFNEKREEGKERSEY 264
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ DL +YY YN+FLI L+++F EL++ +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 265 LSLLRADLCTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQ 324
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSKVGLV+YDS VPIGATPEY+AG YMLQ ASSFLPVMAL+PQE E
Sbjct: 325 ALINRGVNLDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGE 384
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V+DM+AAPGGKTTY+A LM+NTG+I AN+ RLKS+ N+HR+GVTN ++CNYDG +
Sbjct: 385 SVLDMSAAPGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQ 444
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT K DI + ++LQK+LIL+AID V+A
Sbjct: 445 FPKVMG--GFDRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNA 502
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+S++GGY+VY TCSIMV ENE V+DYALKKR+VKLVP GLDFG++GF RF+E RFHPSL+
Sbjct: 503 DSQTGGYLVYCTCSIMVEENEWVVDYALKKRNVKLVPTGLDFGKEGFTRFKEKRFHPSLK 562
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
+RRFYPH HNMDGFFVAKLKK+SN+ T+ P ET Q+ ES V +T +SE
Sbjct: 563 LSRRFYPHSHNMDGFFVAKLKKLSNTIPTA----PKETENQE--ESLVM----ETAASSE 612
Query: 421 QVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKTLRE 480
K A+T K +K L + +K K+ P + +I+K+ E K E
Sbjct: 613 MKEQKPASTPEKSSFEKKQKLNPQTSKPLIVKKKAENKKTGPKKAKIAKLDSEAAKKF-E 671
Query: 481 KVSSKKAGSKDKGN 494
K S K+ G + GN
Sbjct: 672 KPSKKQKGKQMNGN 685
>gi|115528363|gb|AAI24994.1| LOC100036868 protein [Xenopus laevis]
Length = 729
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 248/386 (64%), Positives = 312/386 (80%), Gaps = 4/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ E D F+LPT+EE+E+E PDL +Q RIK+IV VL NF G +R++Y
Sbjct: 221 IQLNVDSE-DPFQLPTEEELEKELSTAPDLSTMQERIKDIVGVLQNFAQRG-GGRTRQDY 278
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
++ LK DL +YY Y +++I L ++FP EL++ +E+ E RPI +RTNTLKTRRRDLA
Sbjct: 279 LKVLKKDLATYYSYGDYMIETLSDLFPVSELVDFLEACEVHRPITIRTNTLKTRRRDLAQ 338
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINR VNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPV+ALAPQE E
Sbjct: 339 ALINRSVNLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENE 398
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM APGGKT+YIA LMKNTG + AN+M A RL+S+ NLHR+GVTN I+ NYDG +
Sbjct: 399 RVLDMCCAPGGKTSYIAQLMKNTGSVVANDMNAERLRSVVGNLHRLGVTNCIISNYDGRQ 458
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ K+LG DRVLLDAPCSGTG+ISKD +VKT+KS++DIQ+C+++QK+L+L+AID +DA
Sbjct: 459 ISKILG--GFDRVLLDAPCSGTGIISKDPAVKTNKSVQDIQRCAHIQKELVLSAIDALDA 516
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S++GG++VY TCSI V ENE V+DYALKKR+VKLVP GLDFG++GFVRF+E RFHPSL
Sbjct: 517 QSQTGGFLVYCTCSITVEENECVVDYALKKRNVKLVPTGLDFGKEGFVRFKERRFHPSLR 576
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
+TRRFYPH HNMDGFF+AKL+K SN+
Sbjct: 577 QTRRFYPHTHNMDGFFIAKLRKFSNA 602
>gi|441670405|ref|XP_004092201.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Nomascus
leucogenys]
Length = 629
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 309/386 (80%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 207 LQINVDEEP--FVLPPAGETEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 263
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 264 LNRLKKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 323
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 324 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 383
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNT++ +YDG +
Sbjct: 384 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQ 443
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 444 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 501
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 502 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 561
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 562 STRRFYPHTHNMDGFFIAKFKKFSNS 587
>gi|255081408|ref|XP_002507926.1| predicted protein [Micromonas sp. RCC299]
gi|226523202|gb|ACO69184.1| predicted protein [Micromonas sp. RCC299]
Length = 592
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/393 (66%), Positives = 305/393 (77%), Gaps = 6/393 (1%)
Query: 30 LPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPV 89
L ++Q RI+E+VRVL +FK + G SR EYV++L DL +YYGYN FLI ++ F
Sbjct: 127 LQHVQARIQEVVRVLQDFKSRREPGRSRGEYVERLVADLATYYGYNTFLIQYFLDTFSVA 186
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E MEL+E+ E RP+ LRTNTLK RRR+LA LINRGVNLDP+ KWSKVGL+VYDS+VPI
Sbjct: 187 ETMELLEANETQRPVTLRTNTLKCRRRELAASLINRGVNLDPIGKWSKVGLLVYDSRVPI 246
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
GATPEYMAG YMLQSASSFLP MALAPQ+ ERV+D+AAAPGGKTTY+AALM+NTG+I+AN
Sbjct: 247 GATPEYMAGHYMLQSASSFLPCMALAPQDGERVLDVAAAPGGKTTYLAALMRNTGMIFAN 306
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
E + RL SL ANL RMG TN VCNYDG +LPKVLG VDRVLLDAPCSGTGVI+KD
Sbjct: 307 EFQKKRLSSLVANLQRMGCTNATVCNYDGRQLPKVLG--HVDRVLLDAPCSGTGVIAKDS 364
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
SVK SKS DI KC++LQK+L++AAID DANSK+GGY+VYSTCSI V ENEAV+DY LK
Sbjct: 365 SVKVSKSEADINKCAHLQKELLVAAIDCCDANSKTGGYVVYSTCSITVEENEAVLDYILK 424
Query: 330 KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKT 389
KRDVKLVP GL+FGR GF +R FHPS+EK+RRFYPHVHNMDGFFVAK+KK+SN
Sbjct: 425 KRDVKLVPTGLEFGRPGFTSYRGKNFHPSVEKSRRFYPHVHNMDGFFVAKIKKLSN---- 480
Query: 390 SAGPQPSETVEQQTPESNVSNGDKKTEENSEQV 422
GP +E + +EE EQV
Sbjct: 481 KLGPAGAEDGAAANGFGKATGDRSDSEEGYEQV 513
>gi|426371343|ref|XP_004052606.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Gorilla gorilla gorilla]
Length = 812
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 306/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGETEQDAQVP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P V+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPTVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
>gi|291190482|ref|NP_001167121.1| RNA methyltransferase NOL1 [Salmo salar]
gi|223648240|gb|ACN10878.1| RNA methyltransferase NOL1 [Salmo salar]
Length = 747
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/476 (57%), Positives = 341/476 (71%), Gaps = 22/476 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI +E D+F LP EEI +E DL + +RIK+ V VLS+F ++G R EY
Sbjct: 202 VQANI-DEMDKFVLPGAEEIAKEGVLLVDLQTIHQRIKDNVDVLSHFATKREEGKERTEY 260
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ LK DL +YY YN FLI L+++FP EL++ +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 261 LSLLKKDLSTYYSYNNFLIDKLLDIFPVSELIDFLEANEIQRPVTIRTNTLKTRRRDLAQ 320
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSKVGLV++DS VPIGATPEY+AG YMLQ ASSFLPVMAL+PQE E
Sbjct: 321 ALINRGVNLDPLGKWSKVGLVIFDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGE 380
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V+DM++APGGKTTY+A LM+NTG+I AN+ A RLKS+ N+HR+GVTN+++CNYDG +
Sbjct: 381 TVLDMSSAPGGKTTYMAQLMRNTGVIVANDASADRLKSVVGNIHRLGVTNSMICNYDGRQ 440
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKTSK DI + ++LQK+LILAAID V+A
Sbjct: 441 FPKVMG--GFDRVLLDAPCSGTGVISKDPAVKTSKDESDILRLAHLQKELILAAIDSVNA 498
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S SGGY+VY TCSIMV ENE V+DYALKKR+VKLV GLDFG++GF RF+E RFHPSL+
Sbjct: 499 ESPSGGYLVYCTCSIMVEENEWVVDYALKKRNVKLVQTGLDFGKEGFTRFKERRFHPSLK 558
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSA-------GPQPSETVEQQTPESNVSNGDK 413
+RRFYPH HNMDGFFVAKLKK SN+ T+A +PSE VE S+ K
Sbjct: 559 LSRRFYPHSHNMDGFFVAKLKKFSNTVPTTAVDKDGEEETEPSEAVEVTADSSDEDGPSK 618
Query: 414 KTEENSEQ---------VLMKKATTKAKDLK---KKTSGLAENGNVESPSNEKRRK 457
+N + + +KAT K +K KKT+ + E P+ K+ K
Sbjct: 619 AGSKNKSKKQKPVPGKPAVSQKATANGKPVKSIAKKTTNPSTMKKKEKPTGLKKAK 674
>gi|351715691|gb|EHB18610.1| Putative ribosomal RNA methyltransferase NOP2 [Heterocephalus
glaber]
Length = 816
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/396 (63%), Positives = 308/396 (77%), Gaps = 14/396 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEE----------KQQPPDLPNLQRRIKEIVRVLSNFKDL 50
+Q+N+ EE EF LP E++ + Q PDL + +RI++IV VL +F
Sbjct: 203 LQINVDEE--EFVLPPAGELDLDILPELGEGGPHAQAPDLQRVHKRIQDIVGVLRDFGAQ 260
Query: 51 SQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNT 110
++G SR EY+ +L+ DL +YY Y +FL+G LVE+FP EL+E +E+ E PRPI LRTNT
Sbjct: 261 REEGRSRPEYLGRLQKDLATYYSYGDFLLGKLVELFPAPELIEFLEANEVPRPITLRTNT 320
Query: 111 LKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLP 170
LKTRRRDLA LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LP
Sbjct: 321 LKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLP 380
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230
VMALAPQE E ++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN
Sbjct: 381 VMALAPQEHEWILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN 440
Query: 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL 290
I+ +YDG + PKV+G DRVLLDAPCSGTG+ISKD +VKT+K +D+ +C++LQK+L
Sbjct: 441 AIISHYDGRQFPKVVG--GFDRVLLDAPCSGTGIISKDPAVKTNKDEKDVLRCAHLQKEL 498
Query: 291 ILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRF 350
+L+AID V+A SK+GGY+VY TCS+MV ENE V+DYALKKR+V+LVP GLDFG++GF RF
Sbjct: 499 LLSAIDSVNATSKTGGYLVYCTCSVMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF 558
Query: 351 REHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
RE RFHP+L TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 559 RERRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNS 594
>gi|426371345|ref|XP_004052607.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Gorilla gorilla gorilla]
Length = 808
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 306/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 206 LQINVDEEP--FVLPPAGETEQDAQVP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 262
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 263 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 322
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 323 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 382
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 383 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 442
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P V+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 443 FPTVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 500
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 501 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 560
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 561 STRRFYPHTHNMDGFFIAKFKKFSNS 586
>gi|385198063|ref|NP_001245239.1| putative ribosomal RNA methyltransferase NOP2 isoform 4 [Homo
sapiens]
gi|116284068|gb|AAH82985.1| NOP2 protein [Homo sapiens]
Length = 628
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 206 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 262
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 263 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 322
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 323 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 382
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 383 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 442
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 443 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 500
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 501 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 560
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 561 STRRFYPHTHNMDGFFIAKFKKFSNS 586
>gi|395847735|ref|XP_003796522.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Otolemur
garnettii]
Length = 818
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/385 (65%), Positives = 305/385 (79%), Gaps = 4/385 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+++N+ +E LP E+E + Q DL + +RI++IV VL +F ++G SR EY
Sbjct: 207 LKINVDDEEPSL-LPPAGEMEHDAQAL-DLQRVHKRIQDIVGVLRDFGTQREEGRSRSEY 264
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL +YY Y +FL+ L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 265 LNRLKKDLATYYSYGDFLLSKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 324
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 325 ALINRGVNLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 384
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 385 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 444
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD SVKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 445 FPKVVG--GFDRVLLDAPCSGTGVISKDPSVKTNKDEKDILRCAHLQKELLLSAIDSVNA 502
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGYIVY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 503 TSKTGGYIVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 562
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN 385
TRRFYPH HNMDGFF+AK KK SN
Sbjct: 563 STRRFYPHTHNMDGFFIAKFKKFSN 587
>gi|449485255|ref|XP_002193312.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Taeniopygia guttata]
Length = 695
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 263/474 (55%), Positives = 345/474 (72%), Gaps = 6/474 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ + ++F+LPT EEIE+E +PPDL + +RI+ + VL +F ++G SR+EY
Sbjct: 221 LQLNL-DIDEQFKLPTSEEIEKEAAEPPDLHVIHQRIQGNMEVLQDFGVRREEGRSRQEY 279
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ D+ +YY Y++FL+ L+++FP EL+ +E+ E PRP+ +RTNTLKTRRRDLA
Sbjct: 280 LALLRRDMAAYYSYSDFLLAKLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQ 339
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 340 ALINRGVNLDPLGKWSKTGLVIYDSTVPIGATPEYLAGHYMLQGASSLLPVMALAPQENE 399
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RL+S+ NLHR+GVTN +V N DG +
Sbjct: 400 RILDMCCAPGGKTSYIAQLMKNTGMILANDSSAERLRSVVGNLHRLGVTNAVVSNCDGRQ 459
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+LIL+AID V+A
Sbjct: 460 FPKVIG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELILSAIDSVNA 517
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S++GGYIVY TCSIMV ENE V+DYALKKR+V+LV GLDFG++GF RF++ RFHPSL+
Sbjct: 518 ASETGGYIVYCTCSIMVEENECVVDYALKKRNVRLVATGLDFGKEGFTRFKDRRFHPSLK 577
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS---KKTSAGPQPSETVEQQTPESNVSNGDKKTEE 417
TRRFYPH HNMDGFF+AK KK SN+ + P P++ V+ K ++
Sbjct: 578 STRRFYPHTHNMDGFFIAKFKKFSNALPQAQKDEEPAVEAAAPSAVPDTVVTEPPPKKKK 637
Query: 418 NSEQVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVR 471
E K+ LKKK S A+ +++ + + K P+R++ KV+
Sbjct: 638 LEESKADKEQKLPQPALKKKCSLQAQRRPLKAVRPFPKMMRPKVPARKKKHKVK 691
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 59/81 (72%)
Query: 41 VRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEK 100
+ VL +F ++G SR+EY+ L+ D+ +YY Y++FL+ L+++FP EL+ +E+ E
Sbjct: 1 MEVLQDFGVRREEGRSRQEYLALLRRDMAAYYSYSDFLLAKLMDIFPLPELINFLEANEV 60
Query: 101 PRPICLRTNTLKTRRRDLADV 121
PRP+ +RTNTLKTRRRDLA V
Sbjct: 61 PRPVTIRTNTLKTRRRDLAQV 81
>gi|395538663|ref|XP_003775388.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
methyltransferase NOP2 [Sarcophilus harrisii]
Length = 706
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/415 (61%), Positives = 325/415 (78%), Gaps = 13/415 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ ++ ++F LP+ +EIEE+ Q P DL ++ +RI++IV VL +F ++G SR EY
Sbjct: 218 LQINL-DKDEKFVLPSGKEIEEDAQAP-DLQSVHQRIQDIVGVLRDFGAQREEGRSRTEY 275
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FLIG ++++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 276 LSRLRKDLATYYSYGDFLIGKIMDIFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 335
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG Y+LQ ASS LPV+ALAPQE E
Sbjct: 336 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYILQGASSMLPVIALAPQEHE 395
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ + DG
Sbjct: 396 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHDDGRH 455
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTG+ISKD SVKT+K +DI++C+++QK+L+L+AID V+A
Sbjct: 456 FPKVVG--GFDRVLLDAPCSGTGIISKDPSVKTNKDDKDIKRCAHIQKELLLSAIDSVNA 513
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGYIVY TCSI V ENE V++YALKKR+V+LVP GLDFG++GF FRE RFHP+L
Sbjct: 514 ASKTGGYIVYCTCSITVEENECVVEYALKKRNVRLVPTGLDFGQEGFTHFRERRFHPTLR 573
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN----SKKTSAGPQPSETVEQQTPESNVSNG 411
TRRFYPH HNMDGFF+AK KK SN SK + A P+++ +S ++NG
Sbjct: 574 STRRFYPHTHNMDGFFIAKFKKFSNAIPQSKTSDAVANPTDST-----DSRLTNG 623
>gi|412990472|emb|CCO19790.1| predicted protein [Bathycoccus prasinos]
Length = 713
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/407 (62%), Positives = 314/407 (77%), Gaps = 25/407 (6%)
Query: 1 MQLNIREESDEFRLPT----------------------KEEIEEEKQQPPDLPNLQRRIK 38
+Q+N+R+E + ++LP+ +++ + PDL ++Q+RI+
Sbjct: 239 LQVNVRDE-ETYQLPSSSSSESSDEGDDDDDDDDDDERRKKSTSSTKGIPDLTSIQQRIQ 297
Query: 39 EIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESF 98
E+VRVL++FK+ SR +Y+++L DL +YYGYN FLI ++ F E MEL+E+
Sbjct: 298 EVVRVLADFKNRRAPDRSRNDYLERLTSDLATYYGYNHFLIRYFIDTFSVPETMELLEAN 357
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAG 158
E RP+ LRTNTLK RRRDLA LINRGVNLDP+ KWSKVGL+VYDS+VPIGATPEYMAG
Sbjct: 358 ETQRPVTLRTNTLKIRRRDLAAQLINRGVNLDPIGKWSKVGLLVYDSRVPIGATPEYMAG 417
Query: 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS 218
YMLQSASSFLP MAL+PQE ERV+D+AAAPGGKTTY+AALM+NTG+I+ANE + RL S
Sbjct: 418 MYMLQSASSFLPCMALSPQEGERVLDVAAAPGGKTTYLAALMRNTGIIFANEFQKKRLNS 477
Query: 219 LTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLE 278
L ANL RMG TN++VCNYDG +LPKVLG VDRVLLDAPCSGTGVI+KD SVK SKS E
Sbjct: 478 LVANLQRMGCTNSVVCNYDGRQLPKVLGY--VDRVLLDAPCSGTGVIAKDSSVKVSKSTE 535
Query: 279 DIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338
DI KC++LQK+L++AA+D DANSKSGGY+VYSTCS+ V ENE V+DY LKKRDVK+V
Sbjct: 536 DIAKCAHLQKELLVAAVDCCDANSKSGGYVVYSTCSVTVEENEQVVDYILKKRDVKIVST 595
Query: 339 GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
GL+FGR+GF +R FHPS+ + RRFYPHVHNMDGFFV KL+KMSN
Sbjct: 596 GLEFGRKGFTSYRGKTFHPSVSECRRFYPHVHNMDGFFVCKLQKMSN 642
>gi|432908758|ref|XP_004078019.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Oryzias latipes]
Length = 758
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/487 (56%), Positives = 345/487 (70%), Gaps = 10/487 (2%)
Query: 7 EESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKL 66
+E D FRLP EE E+E DL + +RIK+ V VL NF ++G +R +YV LK
Sbjct: 235 DEVDRFRLPDPEESEKEGMLSLDLKTIHQRIKDNVDVLCNFSAKREEGKARGDYVSLLKK 294
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
DL +YY YN FLI L+E+FP EL++ +E+ E RP+ +RTNTLKTRRRDLA LINRG
Sbjct: 295 DLCTYYSYNSFLIDKLMELFPLSELVDFLEANEIQRPVTIRTNTLKTRRRDLAQALINRG 354
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
VNLDP+ KWSKVGLV+YDS VP+GATPEY+AG YMLQ ASSFLPVMAL+PQE E V+DM+
Sbjct: 355 VNLDPIGKWSKVGLVIYDSSVPVGATPEYLAGHYMLQGASSFLPVMALSPQEGEMVLDMS 414
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
+APGGKTTYIA LM+NTG+I AN+ + RLKS+ N+HR+GVTNT+VCNYDG + PKV+G
Sbjct: 415 SAPGGKTTYIAQLMRNTGVIVANDANSERLKSVVGNIHRLGVTNTVVCNYDGRQFPKVMG 474
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
DRVLLDAPCSGTGVI+KD +VKTSK DI + ++LQK+LIL+AID V+A S SGG
Sbjct: 475 --GFDRVLLDAPCSGTGVIAKDPAVKTSKDEADILRSAHLQKELILSAIDSVNAESPSGG 532
Query: 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFY 366
Y+VY TCSI V ENE V+DYALKKR+VKLVP GLDFG++GF F++ RFHPSL+ TRRFY
Sbjct: 533 YVVYCTCSITVEENEWVVDYALKKRNVKLVPTGLDFGKEGFTNFKQFRFHPSLKLTRRFY 592
Query: 367 PHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKK 426
PH HNMDGFFVAKLKK SN T P+E E++T + + ++ + KK
Sbjct: 593 PHSHNMDGFFVAKLKKFSNVVPTV----PAEKEEEKTDTTEATASPSAPKDLLSKNDKKK 648
Query: 427 ATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKTLREKVSSKK 486
+ + +D K + NG P+ E R K P + +I+K+ E K K + K
Sbjct: 649 SQMEKRDASKPKT--KPNGTTFKPTEENRSKSG--PKKAKIAKMDGEGVKAAGVKKPTVK 704
Query: 487 AGSKDKG 493
A K++
Sbjct: 705 ADVKNEA 711
>gi|148667388|gb|EDK99804.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
gi|148667389|gb|EDK99805.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
gi|148667390|gb|EDK99806.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
Length = 792
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/454 (58%), Positives = 335/454 (73%), Gaps = 18/454 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP E +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPPAGETDQDGQAP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 ALINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTI--HYDGRQ 429
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 430 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 487
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 488 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 547
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSNGDK 413
TRRFYPH HNMDGFF+AK KK SNS +A P + +Q TP+S NG +
Sbjct: 548 STRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKSE--NGSQ 605
Query: 414 KTEENSEQVLMKKATTKAKDLKK---KTSGLAEN 444
T++ V K+ + KK K +G+A+
Sbjct: 606 PTKKARGAVKAKQQLLRQPHSKKPFQKLNGIAKG 639
>gi|346471103|gb|AEO35396.1| hypothetical protein [Amblyomma maculatum]
Length = 614
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/403 (61%), Positives = 312/403 (77%), Gaps = 2/403 (0%)
Query: 8 ESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
ES+ F LP+ +EIE+EK +PPDL + RIK+I VL++F + + G SR EY+ LK D
Sbjct: 173 ESEIFTLPSGQEIEKEKAEPPDLAIISERIKDITHVLTDFSNRREAGRSRSEYLDILKQD 232
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L YY YNE+L+ +++F P EL+E +E+ E RP+ +RTN+LKTRRRDLA LINRGV
Sbjct: 233 LCEYYSYNEYLMQKFMDLFSPPELLEFLEANEVSRPVTIRTNSLKTRRRDLAQALINRGV 292
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
NLDP+ KWSKVGL+VY+SQVP+GATPEY+AG Y+LQ A+S LPVMALAPQE ER++DM A
Sbjct: 293 NLDPIGKWSKVGLIVYNSQVPVGATPEYLAGQYVLQGAASMLPVMALAPQEHERILDMCA 352
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGK ++IAA+MKNTG+++ANE+ R K++ NLHR+GV NT+VC+YDG + P+V
Sbjct: 353 APGGKASHIAAIMKNTGVLFANELHKERCKAIVGNLHRLGVNNTVVCSYDGRKFPEV--S 410
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
DRVLLDAPCSGTGV+SKD +VKT+K +DI +CS LQKQLILAAID D + GY
Sbjct: 411 KGFDRVLLDAPCSGTGVVSKDPAVKTNKEEKDILRCSQLQKQLILAAIDCADCSDNKPGY 470
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
IVYSTCS+M ENE VIDYALKKR+VKLVP GLDFGR+G R+REHRFHPSL KTRRFYP
Sbjct: 471 IVYSTCSVMPEENEWVIDYALKKRNVKLVPTGLDFGREGLTRYREHRFHPSLNKTRRFYP 530
Query: 368 HVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSN 410
H HNM+GFFVAKLKK SN+ ++ + + +QQ E S+
Sbjct: 531 HTHNMEGFFVAKLKKFSNTIPLASITEEEQHKDQQAAEDVTSD 573
>gi|426371347|ref|XP_004052608.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 3
[Gorilla gorilla gorilla]
Length = 628
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/386 (65%), Positives = 306/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 206 LQINVDEEP--FVLPPAGETEQDAQVP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 262
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 263 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 322
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 323 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 382
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 383 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 442
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P V+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 443 FPTVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 500
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 501 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 560
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 561 STRRFYPHTHNMDGFFIAKFKKFSNS 586
>gi|134025020|gb|AAI35007.1| Si:dkey-91i17.1 protein [Danio rerio]
Length = 676
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/402 (62%), Positives = 316/402 (78%), Gaps = 7/402 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI + +++F+LP + +E P DL + +RIK+ V VLSNF + ++G R EY
Sbjct: 206 VQANI-DTTEKFKLPGAADRAKEGLLPMDLKTIHQRIKDNVDVLSNFNEKREEGKERSEY 264
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ DL +YY YN+FLI L+++F EL++ +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 265 LSLLRADLCTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQ 324
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSKVGLV+YDS VPIGATPEY+AG YMLQ ASSFLPVMAL+PQE E
Sbjct: 325 ALINRGVNLDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGE 384
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V+DM+AAPGGKTTY+A LM+NTG+I AN+ RLKS+ N+HR+GVTN ++CNYDG +
Sbjct: 385 SVLDMSAAPGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQ 444
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT K DI + ++LQK+LIL+AID V+A
Sbjct: 445 FPKVMG--GFDRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNA 502
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+S++GGY+VY TCSIMV ENE V+DYALKKR+VKLVP GLDFG++GF RF+E RFHPSL+
Sbjct: 503 DSQTGGYLVYCTCSIMVEENEWVVDYALKKRNVKLVPTGLDFGKEGFTRFKEKRFHPSLK 562
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQ 402
+RRFYPH HNMDGFFVAKLKK+SN+ T+ P ET Q+
Sbjct: 563 LSRRFYPHSHNMDGFFVAKLKKLSNTIPTA----PKETENQE 600
>gi|156383674|ref|XP_001632958.1| predicted protein [Nematostella vectensis]
gi|156220021|gb|EDO40895.1| predicted protein [Nematostella vectensis]
Length = 415
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/385 (66%), Positives = 306/385 (79%), Gaps = 3/385 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
M+ NI ++ F LP+ +EIE+E +PP+L + +RI+E ++ LSNF + G SRKEY
Sbjct: 26 MKTNI-SSTEVFVLPSGQEIEKEANEPPELALINQRIRENIQALSNFSKAREPGRSRKEY 84
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L DL +YY Y EFL+ +EMF EL+E +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 85 LSLLLKDLCTYYSYGEFLMEKFLEMFQLNELIEFLEANEVHRPVTIRTNSLKTRRRDLAQ 144
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGLVVYDS VPIGATPEY+AG YM+Q +SS LPVMALAPQEKE
Sbjct: 145 ALINRGVNLDPVGKWSKVGLVVYDSSVPIGATPEYLAGHYMIQGSSSMLPVMALAPQEKE 204
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM AAPGGKTTY+AALMKNTG++ AN+ K R K+L AN+HR+GVTNT+VCNYDG
Sbjct: 205 RVLDMCAAPGGKTTYLAALMKNTGIVVANDAKKERTKALVANIHRLGVTNTVVCNYDGRA 264
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DR LLDAPCSGTGVISKD SVKT+K+ +DI +CS++QK+LILAAID VDA
Sbjct: 265 FPKVMG--GFDRTLLDAPCSGTGVISKDPSVKTNKTEKDILRCSHVQKELILAAIDSVDA 322
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GGYIVYSTCSIMV E+E V+DYAL KR VKLVP GLDFGR+GF +FR FHPSL+
Sbjct: 323 KSPTGGYIVYSTCSIMVEEDEWVVDYALSKRHVKLVPTGLDFGREGFSKFRGRHFHPSLK 382
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN 385
TRRFY H HNMDGFFVAKLKK SN
Sbjct: 383 LTRRFYAHAHNMDGFFVAKLKKFSN 407
>gi|348526221|ref|XP_003450619.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Oreochromis niloticus]
Length = 740
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 263/456 (57%), Positives = 331/456 (72%), Gaps = 19/456 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++ NI EE D+FRLP EE P DL + +RIK+ + +L NF ++G R +Y
Sbjct: 213 LKTNIDEE-DKFRLPK----PEEGLLPLDLKAIYQRIKDNIDLLCNFSTKREEGKDRADY 267
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ LK DL +YY YNEFLI +++FP EL++ +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 268 ISLLKKDLCTYYSYNEFLIEKFMDLFPLSELVDFLEANEIHRPVTIRTNTLKTRRRDLAQ 327
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSKVGLV+YDS VP+GATPEY+AG YMLQ ASSFLPVMAL+PQE E
Sbjct: 328 ALINRGVNLDPLGKWSKVGLVIYDSSVPVGATPEYLAGHYMLQGASSFLPVMALSPQEGE 387
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V+DM++APGGKTTYIA LM+NTG+I AN+ A RLKS+ N+HR+GVTNT+VCNYDG E
Sbjct: 388 LVLDMSSAPGGKTTYIAQLMRNTGVIVANDANAERLKSVVGNIHRLGVTNTVVCNYDGRE 447
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVI+KD +VKTSK DI +C++LQK+LIL+AID V+A
Sbjct: 448 FPKVMG--GFDRVLLDAPCSGTGVIAKDPAVKTSKDEVDINRCAHLQKELILSAIDSVNA 505
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+S SGGY+VY TCSI V ENE V+DYALKKR+VKLVP GLDFG++GF F++ RFHP+L
Sbjct: 506 DSPSGGYLVYCTCSITVEENEWVVDYALKKRNVKLVPTGLDFGKEGFTNFKKFRFHPTLR 565
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSA-------GPQPSETVEQQTPESNVSNGDK 413
TRRFYPH HNMDGFFVAKLKK SN T+ P T + PE S DK
Sbjct: 566 LTRRFYPHSHNMDGFFVAKLKKFSNIIPTAPPGNEDEKAEAPETTAATEAPEEKRSKSDK 625
Query: 414 KTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVES 449
+++ ++ KA + ++ K + + + N+ S
Sbjct: 626 -----TKKTVLNKAGSLKQENKANGTVVTKKANINS 656
>gi|302828600|ref|XP_002945867.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f.
nagariensis]
gi|300268682|gb|EFJ52862.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f.
nagariensis]
Length = 829
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/385 (67%), Positives = 311/385 (80%), Gaps = 3/385 (0%)
Query: 7 EESDEFRLPTKEEI---EEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQ 63
EE F LP+ +++ E EK PPDL + RR+K V VL F + G SR +Y+ Q
Sbjct: 156 EEGATFTLPSGQQVDVVEAEKLAPPDLALVARRMKATVAVLETFSSRREPGRSRADYLAQ 215
Query: 64 LKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI 123
LK DLG+YYGYN+F+I + MF E +EL+E+ E PRPI LRTNTL+TRRR+LA LI
Sbjct: 216 LKRDLGTYYGYNDFMIDMYLNMFSVAEALELMEANEVPRPITLRTNTLRTRRRELAAALI 275
Query: 124 NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
RGV+LDP+ WSKVGLVVY+S+VPIGATPEYMAG YMLQ ASSF+PVMALAPQ +E V+
Sbjct: 276 QRGVSLDPIGPWSKVGLVVYESKVPIGATPEYMAGHYMLQGASSFMPVMALAPQPEETVV 335
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DMAAAPGGKTTYIAALM+NTG I+ANE+ RLKS+T NL R+GVTNTIVCNYDG ELP
Sbjct: 336 DMAAAPGGKTTYIAALMRNTGTIFANEISKDRLKSITGNLTRLGVTNTIVCNYDGRELPG 395
Query: 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303
VLG +VDRVLLDAPCSGTGV+SKD +VKTSKS +DI +C +LQK+L+LAAIDMVDANS
Sbjct: 396 VLGERSVDRVLLDAPCSGTGVVSKDPTVKTSKSQQDIWRCGHLQKELLLAAIDMVDANSP 455
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
+GGYIVYSTCS+ V E+E +I+YAL+KR+VK+VP GL+FGR+GFVR+R+ RFHPSL+ R
Sbjct: 456 TGGYIVYSTCSVCVEEDEVIINYALRKRNVKVVPTGLEFGREGFVRYRDFRFHPSLKHAR 515
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKK 388
RFYPH HN+DGFFV KLKK+SN K
Sbjct: 516 RFYPHAHNLDGFFVCKLKKLSNEPK 540
>gi|159476732|ref|XP_001696465.1| hypothetical protein CHLREDRAFT_38989 [Chlamydomonas reinhardtii]
gi|158282690|gb|EDP08442.1| predicted protein [Chlamydomonas reinhardtii]
Length = 360
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 243/358 (67%), Positives = 296/358 (82%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P P+ R + V VL F + + G SR EY+ QLK DL +YYGYNEF+I + MF
Sbjct: 1 PHPPHTHARTQATVAVLEKFGERREAGRSRTEYLAQLKRDLATYYGYNEFMIDMYLNMFS 60
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
E +EL+E+ E PRP+ LRTNTLKTRRR+LA LI RGV+LDP+ WSKVGLVVY+++V
Sbjct: 61 VAEALELMEANEVPRPVTLRTNTLKTRRRELAAALIQRGVSLDPIGPWSKVGLVVYETKV 120
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
PIGATPEYMAG YMLQ ASSF+PVMALAPQ +E V+DMAAAPGGKTTYIAALM+NTG ++
Sbjct: 121 PIGATPEYMAGHYMLQGASSFMPVMALAPQPEETVVDMAAAPGGKTTYIAALMRNTGTVF 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE+ RLKS+T NL R+GVTNT+VCNYDG ELP+VLG +VDRVLLDAPCSGTGV+SK
Sbjct: 181 ANEINKDRLKSITGNLTRLGVTNTVVCNYDGKELPQVLGQRSVDRVLLDAPCSGTGVVSK 240
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKTSKS +DI +C +LQKQL+LAAID+VDANS +GGY+VYSTCS+ V E+EAV++YA
Sbjct: 241 DPSVKTSKSQQDIWRCGHLQKQLLLAAIDLVDANSTTGGYVVYSTCSVCVEEDEAVVNYA 300
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
L+KR+VK+VP GL+FGR+GF+R+R+ RFHPSL+ RRFYPH HN+DGFFV KLKK+SN
Sbjct: 301 LRKRNVKVVPTGLEFGREGFIRYRDFRFHPSLKHARRFYPHAHNLDGFFVCKLKKLSN 358
>gi|427783357|gb|JAA57130.1| Putative trna and rrna cytosine-c5-methylase nucleolar protein
nol1/nop2 [Rhipicephalus pulchellus]
Length = 697
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 243/386 (62%), Positives = 306/386 (79%), Gaps = 3/386 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++ NI ES+ F LP+ +EIE+EK +PPDL + RIK++ VL++F + + SR EY
Sbjct: 170 LKTNI-AESEVFTLPSGQEIEKEKAEPPDLAIINERIKDVTFVLNDFANRREPDRSRSEY 228
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
++ LK DL YY YNE+L+ +++F P EL+E +E+ E RP+ +R N+LKTRRRDLA
Sbjct: 229 LEILKRDLCEYYSYNEYLMQKFMDLFSPAELIEFLEANEVNRPVTIRANSLKTRRRDLAQ 288
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGL+VY+SQVP+GATPEY+AG Y+LQ A+S LPVMALAPQE E
Sbjct: 289 ALINRGVNLDPIGKWSKVGLIVYNSQVPVGATPEYLAGHYVLQGAASMLPVMALAPQENE 348
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM AAPGGKT++IAA+MKNTG+++ANE+ R K++ NLHR+GV NT+VC+YDG +
Sbjct: 349 RILDMCAAPGGKTSHIAAIMKNTGVLFANELHKERCKAIVGNLHRLGVNNTVVCSYDGRK 408
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P+V DRVLLDAPCSGTGV+SKD +VKT+K +DI +CS LQKQLILAAID D
Sbjct: 409 FPEV--AKGFDRVLLDAPCSGTGVVSKDPAVKTNKEEKDILRCSQLQKQLILAAIDCADC 466
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+ GYIVYSTCS+M ENE VIDYALKKR+VKLVP GLDFGR+G R+REHRFHP+L
Sbjct: 467 SDNKPGYIVYSTCSVMPEENEWVIDYALKKRNVKLVPTGLDFGREGLTRYREHRFHPTLN 526
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
KTRRFYPH HNM+GFFVAKLKK SN+
Sbjct: 527 KTRRFYPHSHNMEGFFVAKLKKFSNT 552
>gi|60416136|gb|AAH90742.1| Si:dkey-91i17.1 protein [Danio rerio]
Length = 658
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/402 (62%), Positives = 316/402 (78%), Gaps = 7/402 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI + +++F+LP + +E P DL + +RIK+ V VLSNF + ++G R EY
Sbjct: 201 VQANI-DTTEKFKLPGAADRAKEGLLPMDLKTIHQRIKDNVDVLSNFNEKREEGKERSEY 259
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ DL +YY YN+FLI L+++F EL++ +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 260 LSLLRADLCTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQ 319
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSKVGLV+YDS VPIGATPEY+AG YMLQ ASSFLPVMAL+PQE E
Sbjct: 320 ALINRGVNLDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGE 379
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
++DM+AAPGGKTTY+A LM+NTG+I AN+ RLKS+ N+HR+GVTN ++CNYDG +
Sbjct: 380 SMLDMSAAPGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQ 439
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT K DI + ++LQK+LIL+AID V+A
Sbjct: 440 FPKVMG--GFDRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNA 497
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+S++GGY+VY TCSIMV ENE V+DYALKKR+VKLVP GLDFG++GF RF+E RFHPSL+
Sbjct: 498 DSQTGGYLVYCTCSIMVEENEWVVDYALKKRNVKLVPTGLDFGKEGFTRFKEKRFHPSLK 557
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQ 402
+RRFYPH HNMDGFFVAKLKK+SN+ T+ P ET Q+
Sbjct: 558 LSRRFYPHSHNMDGFFVAKLKKLSNTIPTA----PKETENQE 595
>gi|119609186|gb|EAW88780.1| nucleolar protein 1, 120kDa [Homo sapiens]
Length = 606
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 243/361 (67%), Positives = 293/361 (81%), Gaps = 2/361 (0%)
Query: 26 QPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEM 85
Q PDL + +RI++IV +L +F ++G SR EY+ +LK DL YY Y +FL+G L+++
Sbjct: 26 QAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDL 85
Query: 86 FPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145
FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA LINRGVNLDPL KWSK GLVVYDS
Sbjct: 86 FPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDS 145
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
VPIGATPEY+AG YMLQ ASS LPVMALAPQE ER++DM APGGKT+Y+A LMKNTG+
Sbjct: 146 SVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGV 205
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
I AN+ A RLKS+ NLHR+GVTNTI+ +YDG + PKV+G DRVLLDAPCSGTGVI
Sbjct: 206 ILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVG--GFDRVLLDAPCSGTGVI 263
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
SKD +VKT+K +DI +C++LQK+L+L+AID V+A SK+GGY+VY TCSI V ENE V+D
Sbjct: 264 SKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVD 323
Query: 326 YALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
YALKKR+V+LVP GLDFG++GF RFRE RFHPSL TRRFYPH HNMDGFF+AK KK SN
Sbjct: 324 YALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSN 383
Query: 386 S 386
S
Sbjct: 384 S 384
>gi|326912704|ref|XP_003202687.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Meleagris gallopavo]
Length = 613
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/397 (61%), Positives = 314/397 (79%), Gaps = 5/397 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ E +EF+LPT E+IE++ + PPDL + +RIK + VL +F ++G +R+EY
Sbjct: 142 LQLNL-EIDEEFKLPTDEQIEKDAE-PPDLHVIHQRIKSNMEVLQDFGVKREEGRTRQEY 199
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ D+ +YY Y++FL+ L+++FP EL+ +E+ E PRP+ +RTNTLKTRRRDLA
Sbjct: 200 LALLRRDMAAYYSYSDFLLKMLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQ 259
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 260 ALINRGVNLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVMALAPQENE 319
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RL+S+ NLHR+GVTN +V N DG +
Sbjct: 320 RILDMCCAPGGKTSYIAQLMKNTGMILANDNNAERLRSVVGNLHRLGVTNAVVSNCDGRQ 379
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKVLG DRVLLDAPCSGTGVISKD ++KT+K +DI +C++LQK+L+L+AID V A
Sbjct: 380 FPKVLG--GFDRVLLDAPCSGTGVISKDPAIKTNKDEKDILRCAHLQKELLLSAIDSVSA 437
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S++GGY+VY TCSI V ENE V+DYALKKR+V+LV GLDFG++GF RF++ RFHPSL+
Sbjct: 438 TSETGGYVVYCTCSITVEENEWVVDYALKKRNVRLVATGLDFGKEGFTRFKDRRFHPSLK 497
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-KKTSAGPQPS 396
TRRFYPH HNMDGFF+AKLKK SN+ KT +P+
Sbjct: 498 STRRFYPHTHNMDGFFIAKLKKFSNAIPKTQKDEEPA 534
>gi|303273764|ref|XP_003056234.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462318|gb|EEH59610.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 353
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/354 (69%), Positives = 286/354 (80%), Gaps = 2/354 (0%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL +Q RI+++VRVL +FK ++G SR EYV +L DL +YYGYN FL +E F
Sbjct: 2 PDLQRVQARIQDVVRVLQDFKSRREEGRSRGEYVDRLVADLATYYGYNTFLTRYFIETFS 61
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
E MEL+E+ E RP+ LRTNTLK RRR+LA LINRGVNLDP+ KWSKVGL+VYDS+V
Sbjct: 62 VAETMELLEANETQRPVTLRTNTLKCRRRELAAALINRGVNLDPIGKWSKVGLLVYDSRV 121
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
PIGATPEYMAG YMLQSASSFLP MALAPQ+ ERV+DMAAAPGGKTTY+AALM+NTG I+
Sbjct: 122 PIGATPEYMAGHYMLQSASSFLPCMALAPQDGERVLDMAAAPGGKTTYVAALMRNTGQIF 181
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE + RL SL ANL RMG TN +VCNYDG +LPKVLG VDRVLLDAPCSGTGVI+K
Sbjct: 182 ANEFQKKRLSSLVANLQRMGCTNAVVCNYDGRQLPKVLG--RVDRVLLDAPCSGTGVIAK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVK SKS DI KC++LQK+L++AA+D DA SK+GGY+VYSTCS+ V ENEAV+DY
Sbjct: 240 DSSVKVSKSEADIAKCAHLQKELLVAAVDCCDATSKTGGYVVYSTCSVTVEENEAVVDYL 299
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
LKKRDVKLV GL+FGR+ F +R FHPS+ K RRFYPHVHNMDGFFVAK+K
Sbjct: 300 LKKRDVKLVSTGLEFGREAFASYRGKNFHPSVTKARRFYPHVHNMDGFFVAKIK 353
>gi|363728317|ref|XP_416502.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Gallus
gallus]
Length = 645
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/389 (62%), Positives = 309/389 (79%), Gaps = 5/389 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ E +EF+LPT E+IE++ + PPDL + +RIK + VL NF ++G +R+EY
Sbjct: 209 LQLNL-EIDEEFKLPTDEQIEKDAE-PPDLHVIHQRIKSNMEVLQNFGVKREEGRTRQEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ D+ +YY Y++FL+ L+++FP EL+ +E+ E PRP+ +RTNTLKTRRRDLA
Sbjct: 267 LALLRRDMAAYYSYSDFLLKMLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVMALAPQENE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RL+S+ NLHR+GVTN +V N DG +
Sbjct: 387 RILDMCCAPGGKTSYIAQLMKNTGMILANDSNAERLRSVVGNLHRLGVTNAVVSNCDGRQ 446
Query: 241 LPKV---LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
PKV L DRVLLDAPCSGTGVISKD ++KT+K +DI +C++LQK+L+L+AID
Sbjct: 447 FPKVCSCLLWEGFDRVLLDAPCSGTGVISKDPAIKTNKDEKDILRCAHLQKELLLSAIDS 506
Query: 298 VDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
V+A S++GGYIVY TCSI V ENE V+DYALKKR+V+LV GLDFG++GF RF++ RFHP
Sbjct: 507 VNATSETGGYIVYCTCSITVEENEWVVDYALKKRNVRLVATGLDFGKEGFTRFKDRRFHP 566
Query: 358 SLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
SL+ TRRFYPH HNMDGFF+AKLKK SN+
Sbjct: 567 SLKSTRRFYPHTHNMDGFFIAKLKKFSNA 595
>gi|405955425|gb|EKC22548.1| Putative ribosomal RNA methyltransferase NOP2 [Crassostrea gigas]
Length = 651
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 239/385 (62%), Positives = 307/385 (79%), Gaps = 4/385 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI E +++ LP+ +EIE+E L + +RIKE+ VL +FK + +R++Y
Sbjct: 173 LQTNI-SEMEKYTLPSGQEIEKENILFIYLQLILQRIKEVQHVLGDFKGRREPDRTRQDY 231
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ QL DL +YY YNEFL+ LV++FP E+ E +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 232 LDQLIKDLCAYYSYNEFLMEKLVQLFPH-EISEFLEANEVQRPVTIRTNTLKTRRRDLAQ 290
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGLVVYDSQVP+GATPEY+AG Y++Q SSFLPVMALAPQE E
Sbjct: 291 ALINRGVNLDPIGKWSKVGLVVYDSQVPLGATPEYLAGHYIIQGGSSFLPVMALAPQENE 350
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM++APGGKTT+IA+LMKNTG+I+AN+ R K++ N+HRMG+TNT++CNYDG +
Sbjct: 351 RILDMSSAPGGKTTHIASLMKNTGVIFANDANKDRAKAIVGNVHRMGITNTVICNYDGRK 410
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P V ++ DRVLLDAPCSGTGVI+KD VK +K +DIQ+CS+LQ++L+LAAID DA
Sbjct: 411 FPSV--MHGFDRVLLDAPCSGTGVIAKDTEVKMNKDEKDIQRCSHLQRELLLAAIDCCDA 468
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GGYIVYSTCSI+V ENE+VI+YAL KR+VKLVP GLDFG++G+V F HRFHP+++
Sbjct: 469 KSSTGGYIVYSTCSILVDENESVIEYALNKRNVKLVPTGLDFGKEGYVNFERHRFHPNMK 528
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN 385
TRRFYPH HN+DGFFVAKLKK SN
Sbjct: 529 LTRRFYPHTHNLDGFFVAKLKKFSN 553
>gi|167521191|ref|XP_001744934.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776548|gb|EDQ90167.1| predicted protein [Monosiga brevicollis MX1]
Length = 585
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/407 (60%), Positives = 314/407 (77%), Gaps = 8/407 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI ES F LP+ +EIE + DL +Q RI++ + L NFK+L ++G SR EY
Sbjct: 76 LQTNI-AESKRFVLPSGQEIEAGGRVSEDLSVIQMRIRDNLNTLRNFKELREEGRSRTEY 134
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q L+ DL YYGYN+ ++ +++F EL+E +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 135 LQVLQADLCFYYGYNDCMMERFMQLFGLDELIEALEANEVERPVTIRTNTLKTRRRDLAQ 194
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGV+LDP+ KWSKVGLV+++S VPIGATPEY+AG Y++QSASSFLPVMAL+P E
Sbjct: 195 ALINRGVSLDPVGKWSKVGLVIFESSVPIGATPEYLAGHYLVQSASSFLPVMALSPLPNE 254
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+V+DMAAAPGGKTT++AA+MKNTG++ N+ +R KSL N+HR+G TNT++CNYDG E
Sbjct: 255 KVLDMAAAPGGKTTHMAAMMKNTGMVVVNDFNKARTKSLFGNIHRLGCTNTVICNYDGRE 314
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKVLG DRVLLDAPCSG+GVI+KD K +KS +D +CS LQK+LIL+AID VDA
Sbjct: 315 FPKVLG--GFDRVLLDAPCSGSGVIAKDPGAKNNKSEDDFMRCSTLQKELILSAIDSVDA 372
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GG+IVYSTCSIMV ENE+V+DYAL+KR+VKLV GLDFGR GF FR RFHP+LE
Sbjct: 373 NSKTGGFIVYSTCSIMVDENESVVDYALRKRNVKLVDTGLDFGRPGFTNFRGKRFHPTLE 432
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESN 407
KTRR+YPH HNMDGF+VAKL+K+SN QP E E + P+SN
Sbjct: 433 KTRRYYPHAHNMDGFYVAKLQKLSNEIPKR---QPDE--EDEAPKSN 474
>gi|340379018|ref|XP_003388024.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Amphimedon queenslandica]
Length = 566
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/372 (64%), Positives = 296/372 (79%), Gaps = 5/372 (1%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F LP E I E P DLP + +R++E++ VL+NFKDL + G RKEYV L+ DL Y
Sbjct: 175 FELPDIESISNE---PQDLPTVSQRLREVLHVLANFKDLREPGRKRKEYVTLLEHDLKVY 231
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
YGYNE+LI ++++ P EL+E +++ E PRP+ +RTNTLKTRRRDLA LI+RGVNLDP
Sbjct: 232 YGYNEYLIDKIIQLIPHSELLEFLDACETPRPVTIRTNTLKTRRRDLAGALISRGVNLDP 291
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ WSKVGLV+YDSQVPIGATPEY++G YM+Q ASS LPVMALAPQ ER++DM AAPGG
Sbjct: 292 IGDWSKVGLVIYDSQVPIGATPEYLSGKYMMQGASSLLPVMALAPQVNERILDMCAAPGG 351
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K TYIAALMKNTGL+ N+ K R KSL AN++RMGV NTIVCNYDG + KV ++ D
Sbjct: 352 KATYIAALMKNTGLLVCNDYKKERCKSLIANIYRMGVQNTIVCNYDGRKFTKV--MSGFD 409
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
R+LLDAPCSGTGVI+KD+SVKTSKS I++CS++QK+LIL AID ++A+S +GGY+VYS
Sbjct: 410 RILLDAPCSGTGVIAKDQSVKTSKSEVAIERCSHMQKELILEAIDALNASSSTGGYLVYS 469
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCS++V ENE VIDYAL +R+VK+V GL+FG GF RFRE RFHPSL T+RFYPH HN
Sbjct: 470 TCSVLVEENEGVIDYALSRRNVKVVDTGLNFGVSGFTRFREKRFHPSLSLTKRFYPHTHN 529
Query: 372 MDGFFVAKLKKM 383
MDGFFVAKLKK
Sbjct: 530 MDGFFVAKLKKF 541
>gi|291235462|ref|XP_002737664.1| PREDICTED: NOP2 protein-like [Saccoglossus kowalevskii]
Length = 628
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 235/330 (71%), Positives = 278/330 (84%), Gaps = 2/330 (0%)
Query: 56 SRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRR 115
SR+EY+ QLK DL SYY YN++LIG +VE+F EL+E +E+ E RPI +RTNTLKTRR
Sbjct: 265 SRREYLFQLKKDLASYYSYNDYLIGKIVELFAITELIEFLEANEVQRPITIRTNTLKTRR 324
Query: 116 RDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALA 175
RDLA LINRGVNLDP+ KWSKVGLV+Y+S VPIGATPEY+AG YM+Q ASSFLPVMALA
Sbjct: 325 RDLAQALINRGVNLDPVGKWSKVGLVIYESSVPIGATPEYLAGHYMMQGASSFLPVMALA 384
Query: 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN 235
PQE ER++DM AAPGGKT+YIA+LMKNTG+++AN+ R+KS+ N+HRMG+TNT++CN
Sbjct: 385 PQENERILDMCAAPGGKTSYIASLMKNTGMLFANDANKERVKSIVGNIHRMGITNTVICN 444
Query: 236 YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295
DG PKV+G DRVLLDAPC+GTGVISKD SVKT+K + D+Q+ +QK+L+L+AI
Sbjct: 445 EDGRSFPKVIG--NFDRVLLDAPCTGTGVISKDPSVKTNKDMLDVQRIVTIQKELLLSAI 502
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRF 355
D VDA SK+GGYIVYSTCSI+V ENE VIDYALKKR+VKLV GLDFGR GF RFRE RF
Sbjct: 503 DSVDAKSKTGGYIVYSTCSILVDENEWVIDYALKKRNVKLVSAGLDFGRPGFKRFRERRF 562
Query: 356 HPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
HP+LEKTRRFYPH HNMDGFFVAKLKKM N
Sbjct: 563 HPTLEKTRRFYPHTHNMDGFFVAKLKKMDN 592
>gi|357609454|gb|EHJ66457.1| hypothetical protein KGM_08224 [Danaus plexippus]
Length = 666
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 239/385 (62%), Positives = 300/385 (77%), Gaps = 7/385 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLNI ++ D F P++EE+ Q P L ++ +RIK++V VLS+F L + SR EY
Sbjct: 232 LQLNISKQ-DVFAFPSEEEL----QNPTSLQDIHQRIKDVVTVLSDFNRLKDQERSRCEY 286
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L DL YY YNEFL+ L+++FP EL+E +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 287 TELLMKDLCMYYSYNEFLMEVLMQIFPVQELVEFLEASEVARPLTIRTNSLKTRRRDLAQ 346
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGLVVY S VPIGATPEY+AG Y+LQ ASSFLPVMALAPQE E
Sbjct: 347 ALINRGVNLDPVGKWSKVGLVVYSSTVPIGATPEYLAGHYILQGASSFLPVMALAPQENE 406
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM AAPGGK ++IAA+MKNTG ++AN+ R K++ N HR+G+ N ++CNYDG +
Sbjct: 407 RILDMCAAPGGKASHIAAIMKNTGALFANDANKDRTKAIVGNFHRLGIVNAVICNYDGRQ 466
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P+V + DRVLLDAPC+GTGVI+KD SVKTSK +DIQ+C LQ+QL+LAAID +A
Sbjct: 467 FPEV--IKGFDRVLLDAPCTGTGVIAKDPSVKTSKEQKDIQRCFNLQRQLLLAAIDCCNA 524
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GGYIVYSTCSI+ ENE V++YALK+R+VKLVP GLDFG +GFV++R HRFHPSL+
Sbjct: 525 KSSTGGYIVYSTCSILPEENEWVVNYALKRRNVKLVPTGLDFGTEGFVKYRHHRFHPSLK 584
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN 385
TRRFYPH HNMDGFFVAK KK SN
Sbjct: 585 LTRRFYPHTHNMDGFFVAKFKKFSN 609
>gi|321478295|gb|EFX89252.1| hypothetical protein DAPPUDRAFT_205675 [Daphnia pulex]
Length = 474
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/446 (58%), Positives = 330/446 (73%), Gaps = 18/446 (4%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
+NI ++S+++ LP+ EEIE+E PPDL L+ RIKE++ VLS+F ++G R EY++
Sbjct: 1 MNI-QQSEKYTLPSGEEIEKEVLLPPDLTVLKSRIKEVIGVLSDFTIKREEGRDRVEYLE 59
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVL 122
QL+ DL +YY YN+FL+ A +E FP EL+E +E+ E PRP+ +RTNTLKTRRRDLA L
Sbjct: 60 QLRKDLCTYYSYNDFLMEAFMETFPLGELIEFLEANETPRPMTIRTNTLKTRRRDLAQAL 119
Query: 123 INRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182
INRGVNLDP+ KWSKVGLV+Y+SQVP+GATPEY+AG Y+LQ ASSFLPVMALAPQE ++V
Sbjct: 120 INRGVNLDPIGKWSKVGLVIYNSQVPVGATPEYLAGHYILQGASSFLPVMALAPQEGDKV 179
Query: 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242
+DM+AAPGGKT++IAALMKNTG+++AN+ R K++ NLHR+GVTN +V YDG LP
Sbjct: 180 LDMSAAPGGKTSHIAALMKNTGMLFANDANPDRAKAVVGNLHRLGVTNAVVMTYDGKILP 239
Query: 243 KV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301
K+ G N RVLLDAPCSG+GVISKD S KTSK +DI +CS+LQK+LILAAID D
Sbjct: 240 KMSRGYN---RVLLDAPCSGSGVISKDPSAKTSKDSKDIARCSHLQKELILAAIDCAD-- 294
Query: 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK 361
GGYIVYSTCS++V ENE V+DYALKKR VK+V GLDFGR GF RF++ FHPS++
Sbjct: 295 --EGGYIVYSTCSVLVQENEWVVDYALKKRHVKVVETGLDFGRDGFPRFQKLVFHPSVKL 352
Query: 362 TRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQ 421
+RFYPH HNMDGFFVAKLKK+SN+ PS E + + N D EE +
Sbjct: 353 CKRFYPHTHNMDGFFVAKLKKISNN-------IPSAAPEVEEEVAEEKNSDDSDEETVKS 405
Query: 422 VLMKKATTKAKDLKKKTSG--LAENG 445
MK+ KA K +G + +NG
Sbjct: 406 KRMKRKKGKANGSLNKKTGPKITKNG 431
>gi|312086545|ref|XP_003145118.1| nucleolar protein [Loa loa]
Length = 692
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/442 (55%), Positives = 334/442 (75%), Gaps = 13/442 (2%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
LNI E ++++LP+ EEIE+E +Q P+L L++RI ++ +VL +FK SR EY+
Sbjct: 180 LNI-ESGEKYKLPSVEEIEDELKQTPNLRILKQRISDVFQVLGDFKSRRDPNRSRGEYIS 238
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADV 121
L DL SYYGYNE+LI + +FP EL+E +E+ E+PRP+ +R+N+LKTRR +LA
Sbjct: 239 VLTKDLCSYYGYNEYLIQKFMGIFPNGTELLEFLEANEQPRPVIIRSNSLKTRRAELARN 298
Query: 122 LINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER 181
LINRG+N+DP ++W+KVGL+VYDSQVP+GATPEY+AG YMLQ SSFLPVMALAPQ +E
Sbjct: 299 LINRGMNVDPAAEWTKVGLIVYDSQVPVGATPEYLAGHYMLQGLSSFLPVMALAPQPEET 358
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
++D+ +APGGK+++IAALMKNTG++YAN+ R +++ NLHR+GV N +V N DG E
Sbjct: 359 ILDVCSAPGGKSSHIAALMKNTGVLYANDANMQRCRAVIGNLHRLGVNNAVVSNLDGREF 418
Query: 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301
K++ DRVLLDAPCSGTGVI KDESVKT + +D+Q+C LQ++LILAA+D ++AN
Sbjct: 419 AKIMP-QGFDRVLLDAPCSGTGVIWKDESVKTRRDSQDVQRCHTLQRELILAALDSINAN 477
Query: 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK 361
SK+GGY+VYSTCS++V ENEAV+DYAL+KRD KLV GLD G QGF +FRE+RFHPSL
Sbjct: 478 SKTGGYLVYSTCSVLVEENEAVVDYALRKRDCKLVAMGLDIGVQGFTKFREYRFHPSLSL 537
Query: 362 TRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQ 421
TRR+YPHVHN+DGFFVAK KK+SNS K++ S+ ++ + P +++ +K NSEQ
Sbjct: 538 TRRYYPHVHNIDGFFVAKFKKLSNS-KSAKNAGLSDELKDKNP---ITSKNKIQNGNSEQ 593
Query: 422 V------LMKKATTKAKDLKKK 437
V +MKK + + ++KK
Sbjct: 594 VGIKGKSVMKKKSISSGTIRKK 615
>gi|393908574|gb|EFO18951.2| nucleolar protein [Loa loa]
Length = 726
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/442 (55%), Positives = 334/442 (75%), Gaps = 13/442 (2%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
LNI E ++++LP+ EEIE+E +Q P+L L++RI ++ +VL +FK SR EY+
Sbjct: 214 LNI-ESGEKYKLPSVEEIEDELKQTPNLRILKQRISDVFQVLGDFKSRRDPNRSRGEYIS 272
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADV 121
L DL SYYGYNE+LI + +FP EL+E +E+ E+PRP+ +R+N+LKTRR +LA
Sbjct: 273 VLTKDLCSYYGYNEYLIQKFMGIFPNGTELLEFLEANEQPRPVIIRSNSLKTRRAELARN 332
Query: 122 LINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER 181
LINRG+N+DP ++W+KVGL+VYDSQVP+GATPEY+AG YMLQ SSFLPVMALAPQ +E
Sbjct: 333 LINRGMNVDPAAEWTKVGLIVYDSQVPVGATPEYLAGHYMLQGLSSFLPVMALAPQPEET 392
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
++D+ +APGGK+++IAALMKNTG++YAN+ R +++ NLHR+GV N +V N DG E
Sbjct: 393 ILDVCSAPGGKSSHIAALMKNTGVLYANDANMQRCRAVIGNLHRLGVNNAVVSNLDGREF 452
Query: 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301
K++ DRVLLDAPCSGTGVI KDESVKT + +D+Q+C LQ++LILAA+D ++AN
Sbjct: 453 AKIMP-QGFDRVLLDAPCSGTGVIWKDESVKTRRDSQDVQRCHTLQRELILAALDSINAN 511
Query: 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK 361
SK+GGY+VYSTCS++V ENEAV+DYAL+KRD KLV GLD G QGF +FRE+RFHPSL
Sbjct: 512 SKTGGYLVYSTCSVLVEENEAVVDYALRKRDCKLVAMGLDIGVQGFTKFREYRFHPSLSL 571
Query: 362 TRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQ 421
TRR+YPHVHN+DGFFVAK KK+SNS K++ S+ ++ + P +++ +K NSEQ
Sbjct: 572 TRRYYPHVHNIDGFFVAKFKKLSNS-KSAKNAGLSDELKDKNP---ITSKNKIQNGNSEQ 627
Query: 422 V------LMKKATTKAKDLKKK 437
V +MKK + + ++KK
Sbjct: 628 VGIKGKSVMKKKSISSGTIRKK 649
>gi|91090670|ref|XP_974410.1| PREDICTED: similar to CG8545 CG8545-PA [Tribolium castaneum]
gi|270013309|gb|EFA09757.1| hypothetical protein TcasGA2_TC011896 [Tribolium castaneum]
Length = 731
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/420 (56%), Positives = 321/420 (76%), Gaps = 7/420 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+NI +S++F+LP+K+E EE L +Q+RI++++ VLS+F L + SR +Y
Sbjct: 168 LQMNI-ADSEKFKLPSKKEREE----TASLQEVQQRIRDVIGVLSDFTKLRDEKHSRSDY 222
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
++ LK DL +YY YN+FL+ +++FP E++E +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 223 LEMLKADLCTYYSYNDFLMEKFMQLFPLTEVLEFLEASEVQRPLTIRTNSLKTRRRDLAQ 282
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGLVVY SQVPIGATPEY+AG Y++Q ASS LPVMALAPQE E
Sbjct: 283 ALINRGVNLDPVGKWSKVGLVVYSSQVPIGATPEYLAGHYIIQGASSLLPVMALAPQENE 342
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGK ++IAALMKNTG+++AN++ + R+K++ N HR+GV N+++ DG +
Sbjct: 343 RILDMAAAPGGKASHIAALMKNTGVLFANDVNSERIKAIVGNFHRLGVVNSVITCVDGRK 402
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PK+ L DRVLLDAPC+GTGV++KD+SVKTSK +DIQ+C LQ++L+LAAID ++A
Sbjct: 403 FPKI--LKGFDRVLLDAPCTGTGVVAKDQSVKTSKDEQDIQRCYNLQRELLLAAIDCLNA 460
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S++GGY+VYSTCS++ ENE V+DYALKKR+VKLV GL+FG +GF +R+ RFHPSL+
Sbjct: 461 KSETGGYLVYSTCSVLPEENEWVVDYALKKRNVKLVDTGLEFGNEGFTNYRQFRFHPSLK 520
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
TRRFYPH HNMDGFFVAK +K SN T+AG + E E + KK ++N E
Sbjct: 521 LTRRFYPHTHNMDGFFVAKFRKFSNLIPTTAGEEQGEKRELEEEVEVEEVSTKKQKKNGE 580
>gi|345481794|ref|XP_001604770.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Nasonia vitripennis]
Length = 786
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 228/374 (60%), Positives = 300/374 (80%), Gaps = 6/374 (1%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F PT+EE+ P +L ++Q+RI++++ VLS+FK L Q SR EY++ LK DL +Y
Sbjct: 401 FNFPTEEEL----SNPTNLKDVQQRIQDVIMVLSDFKKLRQPDRSRSEYLELLKTDLCTY 456
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
+ YN FL+ L++MFP EL+E +ES E RP+ +RTNTLKTRRRDLA LINRGVNLDP
Sbjct: 457 FSYNSFLMEKLMQMFPLSELLEFLESSEVQRPMTIRTNTLKTRRRDLAHALINRGVNLDP 516
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KW+ VGLVVY SQVP+GATPEY+AG Y+LQ ASSFLPVMAL P+ ER++DM AAPGG
Sbjct: 517 IGKWTNVGLVVYSSQVPMGATPEYLAGHYILQGASSFLPVMALEPKINERILDMCAAPGG 576
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K+++IAALMKNTG++++N++ R+K++ N HR+G+TN+++C+YDG +LP V + D
Sbjct: 577 KSSHIAALMKNTGVLFSNDVNKDRIKAVIGNFHRLGITNSVICSYDGRKLPSV--IKGFD 634
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLDAPC+GTGV++KD SVKT+K DIQ+C LQ++L+LAAID V+A S+SGG IVYS
Sbjct: 635 RVLLDAPCTGTGVVAKDPSVKTNKDEVDIQRCCTLQRELLLAAIDSVNARSESGGIIVYS 694
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCSI+ ENE ++DYAL+KRDVK+VP GL+FG GF +R+HRFHPSL+ T+RFYPH+HN
Sbjct: 695 TCSILPEENEWIVDYALRKRDVKVVPTGLEFGADGFTNYRQHRFHPSLKLTKRFYPHMHN 754
Query: 372 MDGFFVAKLKKMSN 385
MDGF+VAKLKK SN
Sbjct: 755 MDGFYVAKLKKFSN 768
>gi|213405703|ref|XP_002173623.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275]
gi|212001670|gb|EEB07330.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275]
Length = 617
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/373 (64%), Positives = 297/373 (79%), Gaps = 2/373 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP E +E DL +Q R++EIVRVL++FK L + G SR EYV QL D+ +YYG
Sbjct: 178 LPPPGEDTDEAGLSQDLGQVQLRMQEIVRVLNDFKTLCEPGRSRTEYVDQLLKDICTYYG 237
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+ FL L EMFP E +E E+ E PRP+ +RTNTLKT RR+LA LINRGVNL+P+
Sbjct: 238 YSRFLAEKLFEMFPVSEAIEFFEANETPRPMTIRTNTLKTNRRELAQALINRGVNLEPIG 297
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
KW+KVGL V+DSQVPIGATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DM++APGGK
Sbjct: 298 KWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMSSAPGGKV 357
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYIAAL KN+G+I+AN+ +R+K+L+AN+HR+GV NTIVCNYDG + P+ + L DRV
Sbjct: 358 TYIAALQKNSGVIFANDSNKARIKALSANIHRLGVRNTIVCNYDGRKFPEEV-LGGFDRV 416
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
+LDAPCSGTGVI KD+SVK +K+ D +LQ+QL+L+AID VDA SK+GGYIVYSTC
Sbjct: 417 MLDAPCSGTGVIHKDQSVKANKTAHDFDMLGHLQRQLLLSAIDSVDAESKTGGYIVYSTC 476
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
SI V E+EAVI YALKKR +VKLV GL+FGR+GF R+RE RFHPSL+ TRR+YPHVHN+
Sbjct: 477 SITVDEDEAVIQYALKKRPNVKLVSTGLEFGREGFTRYREKRFHPSLKLTRRYYPHVHNI 536
Query: 373 DGFFVAKLKKMSN 385
DGF+VAKLKK+SN
Sbjct: 537 DGFYVAKLKKLSN 549
>gi|384500230|gb|EIE90721.1| hypothetical protein RO3G_15432 [Rhizopus delemar RA 99-880]
Length = 608
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/380 (63%), Positives = 295/380 (77%), Gaps = 7/380 (1%)
Query: 7 EESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKL 66
+E + ++LP EE E D+ + +RIK++V VL++FK TSR++YV +L
Sbjct: 195 DEGERYKLPEGEEDE----LVADITVVSQRIKDLVNVLNDFKKFRDPNTSRQDYVDRLIK 250
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
D+ SYYGY+EFL L +FP E +E E+ E RP+ +RTNTLKTRRRDLA LINRG
Sbjct: 251 DIASYYGYSEFLAEKLFNLFPVSEAIEFFEANEVARPVTIRTNTLKTRRRDLAQALINRG 310
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
VNL+P+ KWSKVGL V++SQVPIGATPEY+AG YMLQ+ASSFLPVMALAPQ ERV+DMA
Sbjct: 311 VNLEPIGKWSKVGLQVFESQVPIGATPEYLAGHYMLQAASSFLPVMALAPQPDERVLDMA 370
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
+APGGKTT+IAAL KNTG+++AN+ RLKSL AN+HR+GV N +VCNYDG E PKVLG
Sbjct: 371 SAPGGKTTHIAALQKNTGMVFANDATKDRLKSLVANIHRLGVKNAVVCNYDGREFPKVLG 430
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
DRVLLDAPCSGTGVISKD SVK +K+ +D +LQKQLIL+AID VDA SK+GG
Sbjct: 431 --GFDRVLLDAPCSGTGVISKDPSVKLNKTEKDFIDIPFLQKQLILSAIDSVDAKSKTGG 488
Query: 307 YIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
YIVYSTCS+ V ENEAV++YAL KR +VKLVP LDFGR+GF +R FHPSL+ TRRF
Sbjct: 489 YIVYSTCSVTVEENEAVVNYALSKRPNVKLVPTTLDFGREGFASYRGKTFHPSLKLTRRF 548
Query: 366 YPHVHNMDGFFVAKLKKMSN 385
YPHVHNMDGF+VAK KK+ N
Sbjct: 549 YPHVHNMDGFYVAKFKKLDN 568
>gi|170585061|ref|XP_001897306.1| NOL1/NOP2/sun family putative RNA methylase containing protein
[Brugia malayi]
gi|158595285|gb|EDP33851.1| NOL1/NOP2/sun family putative RNA methylase containing protein
[Brugia malayi]
Length = 739
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 229/386 (59%), Positives = 308/386 (79%), Gaps = 3/386 (0%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
LNI E +++++LP+ EEIE+E +Q P+L +++RI ++ +VL +FK+ SR +Y+
Sbjct: 223 LNI-ENAEKYKLPSVEEIEDELKQTPNLKIIKQRISDVFQVLGDFKNRRDPDRSRGDYIS 281
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADV 121
L DL SYYGYNE+LI + +FP EL+E +E+ E+PRP+ +R+N+LKTRR +LA
Sbjct: 282 ILTKDLCSYYGYNEYLIQKFMSIFPNGTELLEFLEANEQPRPVIIRSNSLKTRRAELARN 341
Query: 122 LINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER 181
LINRG+N+DP ++W+K+GL+VYDSQVP+GATPEY+AG YMLQ SSFLPVMALAP+ +E
Sbjct: 342 LINRGMNVDPAAEWTKIGLIVYDSQVPVGATPEYLAGHYMLQGLSSFLPVMALAPRPEET 401
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
++D+ +APGGK+++IAALMKNTG++YAN+ R +++ NLHR+GV N +V N DG E
Sbjct: 402 ILDVCSAPGGKSSHIAALMKNTGVLYANDANMQRCRAVIGNLHRLGVNNAVVSNLDGREF 461
Query: 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301
K++ DRVLLDAPCSGTGVI KD SVKT + +D+Q+C LQ++LILAA+D ++AN
Sbjct: 462 AKIMP-QGFDRVLLDAPCSGTGVIWKDGSVKTRRDSQDVQRCHTLQRELILAALDSINAN 520
Query: 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK 361
SK+GGY+VYSTCS++V ENEAV+DYAL+KRD KLVP GLD G QGF +FRE+RFHPSL
Sbjct: 521 SKTGGYLVYSTCSVLVEENEAVVDYALRKRDCKLVPMGLDVGVQGFTKFREYRFHPSLCL 580
Query: 362 TRRFYPHVHNMDGFFVAKLKKMSNSK 387
TRR+YPHVHN+DGFFVAK KK+SNSK
Sbjct: 581 TRRYYPHVHNIDGFFVAKFKKLSNSK 606
>gi|340726578|ref|XP_003401633.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Bombus terrestris]
Length = 602
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 232/374 (62%), Positives = 299/374 (79%), Gaps = 6/374 (1%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F PTKEE+ + +L ++Q+RIK+++ +LS+FK L SR EY+ L+ DL +Y
Sbjct: 221 FTFPTKEELAD----VTNLKDVQQRIKDVIMILSDFKRLRDINRSRTEYMDLLRSDLCTY 276
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y YN FL+ L+++FP EL+E +E+ E RP+ +RTN LKTRRRDLA+ LINRGVNLDP
Sbjct: 277 YSYNNFLMEKLIQIFPLDELLEFLEASEVQRPMTIRTNILKTRRRDLAEALINRGVNLDP 336
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KW+KVGLV+Y SQVP+GATPEY+AG Y+LQ ASSFLPVMAL P+E ERV+DM AAPGG
Sbjct: 337 IGKWTKVGLVIYSSQVPMGATPEYLAGHYILQGASSFLPVMALDPKENERVLDMCAAPGG 396
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K+++IAALMKNTG++++N++ R+K++ N HR+G+TN+IVC YDG +LP V + D
Sbjct: 397 KSSHIAALMKNTGVLFSNDVNEERIKAVVGNFHRLGITNSIVCTYDGRKLPTV--IKGFD 454
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLDAPC+GTGV+SKD SVKT+K DIQ+C LQK+L+LAAID +A S+SGG IVYS
Sbjct: 455 RVLLDAPCTGTGVVSKDPSVKTNKDEVDIQRCCTLQKELLLAAIDCANARSESGGIIVYS 514
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCSI+ ENE VID+ALKKRDVKL+P GL+FG +GF +R++RFHPSL+ T+RFYPHVHN
Sbjct: 515 TCSILPEENEWVIDFALKKRDVKLIPTGLEFGAEGFTSYRQYRFHPSLKLTKRFYPHVHN 574
Query: 372 MDGFFVAKLKKMSN 385
MDGFFVAKLKK SN
Sbjct: 575 MDGFFVAKLKKFSN 588
>gi|350418300|ref|XP_003491816.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Bombus impatiens]
Length = 604
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/374 (62%), Positives = 298/374 (79%), Gaps = 6/374 (1%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F PTKEE+ + +L ++Q+RIK++V +LS+FK L SR EY+ L+ DL +Y
Sbjct: 223 FTFPTKEELAD----VTNLKDVQQRIKDVVMILSDFKRLRDINRSRTEYMDLLRSDLCTY 278
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y YN FL+ L+++FP EL+E +E+ E RP+ +RTN LKTRRRDLA+ LINRGVNLDP
Sbjct: 279 YSYNNFLMEKLIQIFPLDELLEFLEASEVQRPMTIRTNILKTRRRDLAEALINRGVNLDP 338
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KW+KVGLV+Y SQVP+GATPEY+AG Y+LQ ASSFLPVMAL P+E ERV+DM AAPGG
Sbjct: 339 IGKWTKVGLVIYSSQVPMGATPEYLAGHYILQGASSFLPVMALDPKENERVLDMCAAPGG 398
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K+++IAALMKNTG++++N+ R+K++ N HR+G+TN+IVC YDG +LP V + D
Sbjct: 399 KSSHIAALMKNTGVLFSNDANEERIKAVVGNFHRLGITNSIVCTYDGRKLPTV--IKGFD 456
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLDAPC+GTGV+SKD SVKT+K DIQ+C LQK+L+LAAID +A S+SGG IVYS
Sbjct: 457 RVLLDAPCTGTGVVSKDPSVKTNKDEVDIQRCCTLQKELLLAAIDCANARSESGGIIVYS 516
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCSI+ ENE VID+ALKKRDVKL+P GL+FG +GF +R++RFHPSL+ T+RFYPHVHN
Sbjct: 517 TCSILPEENEWVIDFALKKRDVKLIPTGLEFGAEGFTSYRQYRFHPSLKLTKRFYPHVHN 576
Query: 372 MDGFFVAKLKKMSN 385
MDGFFVAKLKK SN
Sbjct: 577 MDGFFVAKLKKFSN 590
>gi|198431505|ref|XP_002123666.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 693
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/433 (57%), Positives = 328/433 (75%), Gaps = 4/433 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI E++ F LP+ +EIE+E QPP L ++ +RIK++V VLS+F + +RK+Y
Sbjct: 168 IQTNI-AETETFVLPSGQEIEKESTQPPGLDHIHQRIKDVVAVLSDFGNKRDPERTRKDY 226
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V L+ DL +YY YN+FL+ ++MFP EL+ +E+ E RPI +RTNTLKT+RRDLA
Sbjct: 227 VNVLRKDLCTYYSYNDFLLSKFMDMFPLTELIAFLEANEVNRPITIRTNTLKTKRRDLAQ 286
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI+RGVNLDPL+KW+KVGLVVY+S VPIGATPEY+AG YM+Q ASSF+PVMALAPQ E
Sbjct: 287 ALISRGVNLDPLAKWTKVGLVVYESPVPIGATPEYLAGHYMIQGASSFVPVMALAPQPGE 346
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM AAPGGKTTYIA LMKN+G I+ N++ +RLK++ N+HRMGV+N+++ NYD
Sbjct: 347 RVLDMCAAPGGKTTYIAQLMKNSGFIFVNDINKARLKAVVGNMHRMGVSNSVISNYDARS 406
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P ++G RVLLDAPCSGTGVISKD SVKTSK DI KCS+LQK+LILAAID +A
Sbjct: 407 FPTIMG--NFSRVLLDAPCSGTGVISKDPSVKTSKDDSDITKCSHLQKELILAAIDSCNA 464
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+++GGYIVY TCS+MV ENE V++YALKKR+VKLV GL+FG +GF ++R++RFHPSL+
Sbjct: 465 QAQNGGYIVYCTCSVMVEENEEVVNYALKKRNVKLVQTGLEFGVEGFCKYRQYRFHPSLK 524
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
+TRRFYPH HNMDGFFVAK KK SN +S + + V ++T + ++ T++++E
Sbjct: 525 QTRRFYPHSHNMDGFFVAKFKKFSNKIPSSDDVKEKQEV-KETVTDDAADPSTSTDQDTE 583
Query: 421 QVLMKKATTKAKD 433
KK ++ D
Sbjct: 584 DKTSKKRPKESDD 596
>gi|383851252|ref|XP_003701148.1| PREDICTED: putative ribosomal RNA methyltransferase nop2-like
[Megachile rotundata]
Length = 596
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/374 (62%), Positives = 296/374 (79%), Gaps = 7/374 (1%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F PT EE +L ++Q+RIK++V +LS+ K L SR EY+ LK DL +Y
Sbjct: 216 FHFPT-----EEDADVTNLKDVQQRIKDVVMILSDLKRLRDINRSRSEYMDLLKKDLCTY 270
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y YN FL+ L+++FP EL+E +E+ E RP+ +RTNTLKTRRRDLA+ LINRGVNLDP
Sbjct: 271 YSYNNFLMQKLMQIFPLDELLEFLEASEIQRPMTIRTNTLKTRRRDLAEALINRGVNLDP 330
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KW+KVGLVVY SQVP+GATPEY+AG Y+LQ ASSFLPVMAL P+E ER++DM AAPGG
Sbjct: 331 IGKWTKVGLVVYSSQVPMGATPEYLAGHYILQGASSFLPVMALEPKENERILDMCAAPGG 390
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K+++IAALMKNTG++++N++ A R+K++ N HR+G+ N++VC YDG +LP V + D
Sbjct: 391 KSSHIAALMKNTGVLFSNDVNAERIKAVVGNFHRLGIVNSVVCTYDGRKLPSV--IKGFD 448
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLDAPC+GTGV+SKD SVKT+K DIQ+C LQ++L+LAAID +A S+SGG IVYS
Sbjct: 449 RVLLDAPCTGTGVVSKDPSVKTNKDEVDIQRCCTLQRELLLAAIDCANARSESGGIIVYS 508
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCSI+ ENE VIDYALKKRDVKLVP GL+FG +GF +R++RFHPSL+ T+RFYPHVHN
Sbjct: 509 TCSILPEENEWVIDYALKKRDVKLVPTGLEFGTEGFTSYRQYRFHPSLKLTKRFYPHVHN 568
Query: 372 MDGFFVAKLKKMSN 385
MDGFFVAKLKK SN
Sbjct: 569 MDGFFVAKLKKFSN 582
>gi|194752730|ref|XP_001958672.1| GF12515 [Drosophila ananassae]
gi|190619970|gb|EDV35494.1| GF12515 [Drosophila ananassae]
Length = 896
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/386 (60%), Positives = 299/386 (77%), Gaps = 6/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ+ + + D F+LP +EE E ++ L +Q+RIK++ VLS+FK Q SR EY
Sbjct: 273 MQMTV-DRQDVFQLPNEEE---EAEKDLTLQEVQQRIKDVTLVLSDFKKYRQADRSRGEY 328
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ DL YY YNEFL+ L++MFP ELME +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 329 IDLLRRDLCLYYSYNEFLMEKLMDMFPLTELMEYLEASEVARPLTIRTNTLKTRRRDLAG 388
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KW+KVGLVV++SQVP+GATPEY+AG YM+Q ASS LPVMALAPQE E
Sbjct: 389 ALINRGVNLDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENE 448
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM +APGGK ++IA++MKNTG+++AN+ R+K++ AN HR+G+ N +V DG +
Sbjct: 449 RILDMCSAPGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTK 508
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ + DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID VDA
Sbjct: 509 FRNI--MTGFDRVLLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDA 566
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S SGGYIVYSTCS++ ENE VIDYALKKR+VKLVP GLDFG +GF +FR+HRFHPSL
Sbjct: 567 KSSSGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHRFHPSLN 626
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
T+R+YPH HNMDGF+VAKLKK SN+
Sbjct: 627 LTKRYYPHTHNMDGFYVAKLKKFSNT 652
>gi|19113319|ref|NP_596527.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe
972h-]
gi|74582834|sp|O94268.1|NOP2_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase nop2;
AltName: Full=Nucleolar protein 2
gi|3810844|emb|CAA21805.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe]
Length = 608
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/361 (65%), Positives = 296/361 (81%), Gaps = 4/361 (1%)
Query: 27 PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
P DL +Q RI+EIVRVL++FK+L + G +R EYV QL D+ +YYGY+ FL L E+F
Sbjct: 188 PQDLSQIQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELF 247
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
E +E E+ E PRP+ +RTNTLKT+RR+LA LINRGVNL+P+ KWSKVGL V++SQ
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSKVGLQVFESQ 307
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DM++APGGK TY+AAL KNTG+I
Sbjct: 308 VPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGII 367
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCSGTGVI 265
+AN+ +R K+L+AN+HR+GV N IVCNYDG + P +V+G DRVLLDAPCSGTGVI
Sbjct: 368 FANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIG--GFDRVLLDAPCSGTGVI 425
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD+SVKT+KS D S+LQ+QL+L+AID V+A+SK+GG+IVYSTCSI V E+EAVI
Sbjct: 426 YKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQ 485
Query: 326 YALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
YALKKR +VKLV GL+FGR+GF RFRE RFHPSL+ TRR+YPHVHN+DGFFVAKLKK+S
Sbjct: 486 YALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKLKKIS 545
Query: 385 N 385
+
Sbjct: 546 D 546
>gi|126140362|ref|XP_001386703.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054]
gi|126093987|gb|ABN68674.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054]
Length = 625
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/428 (57%), Positives = 320/428 (74%), Gaps = 7/428 (1%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP+ EE + +Q P D+ ++ R+ EIV+VL NFKDL+++GTSR +Y+ +L D+ Y+G
Sbjct: 192 LPSAEEAQIMEQGPQDVTMVRTRMIEIVKVLENFKDLAEEGTSRNDYISRLLKDICEYFG 251
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 252 YSEFLAEKLFNLFSPSEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 311
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL V+DSQVPIGATPEY+AG Y+LQ+ASSFLPV+ALAPQE ERV+DMAAAPGGKT
Sbjct: 312 SWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVIALAPQENERVLDMAAAPGGKT 371
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DRV
Sbjct: 372 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRV 429
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDANS +GG IVYSTC
Sbjct: 430 LLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSATGGIIVYSTC 489
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
SI V ENE+V+DYAL+KR +VKL+ GL+ G++GF +R F+PSL TRR+YPH +N+
Sbjct: 490 SIAVDENESVVDYALRKRPNVKLIEAGLEIGKEGFTSYRGKHFNPSLNLTRRYYPHTYNV 549
Query: 373 DGFFVAKLKKMSNSKK--TSAGPQPSETVEQ-QTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK KK++ S + AG + E++ + + E + + D EN E + +
Sbjct: 550 DGFFVAKFKKIAASPHDVSKAGAKEKESIARAEAEEEGIIHDDFAEFENDEDKSLIDQSV 609
Query: 430 KAKDLKKK 437
K ++LK+K
Sbjct: 610 K-RNLKRK 616
>gi|428162505|gb|EKX31642.1| hypothetical protein GUITHDRAFT_82915 [Guillardia theta CCMP2712]
Length = 444
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/387 (63%), Positives = 306/387 (79%), Gaps = 5/387 (1%)
Query: 9 SDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDL 68
+D+FRLPT+EE+EEE ++PPD LQ+R++EI+RVL NFK+ + +SR +Y+ QL+ DL
Sbjct: 3 TDDFRLPTEEELEEEAKRPPDSGMLQQRVQEILRVLVNFKERRAENSSRADYMSQLEKDL 62
Query: 69 GSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVN 128
+ +GY FLI +++FPP E +E +E+ E+ RP+ LRTNTLKTRR++LA LI RGVN
Sbjct: 63 CALHGYVPFLIQLFLQLFPPAEAIEFLEASERQRPVTLRTNTLKTRRKELATALIARGVN 122
Query: 129 LDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAA 188
LDP+ +WS VGLVVYDS VP+GATPEY+AG YMLQSASSFLPVMAL+ E E+V+DM A+
Sbjct: 123 LDPIDRWSSVGLVVYDSSVPVGATPEYLAGHYMLQSASSFLPVMALSAGEHEKVLDMCAS 182
Query: 189 PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248
PGGKTTYIAA+MKN G+I +N+ RLKSL N+ RMGV N +V NYDG LP V +
Sbjct: 183 PGGKTTYIAAMMKNAGMIVSNDANEKRLKSLVGNIQRMGVRNAVVTNYDGRLLPSV--FS 240
Query: 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308
+ DRVLLDAPCSG GVISKD +V+ K DIQ+CS LQK+LILAAID VDA+SK+GG I
Sbjct: 241 SFDRVLLDAPCSGLGVISKDPTVRMQKDEGDIQRCSALQKELILAAIDCVDASSKTGGII 300
Query: 309 VYSTCSIMVTENEAVIDYALKKRDVKLV-PCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
VYSTC+I V ENEAVIDYALKKR VKL+ GLDFG G+ R+R +FHPS+ TRRFYP
Sbjct: 301 VYSTCTITVEENEAVIDYALKKRHVKLLDTAGLDFGVPGYGRYRGKQFHPSVSLTRRFYP 360
Query: 368 HVHNMDGFFVAKLKKMSNSKKTSAGPQ 394
HVHNMDGFFVAKLKK+SN+K +A PQ
Sbjct: 361 HVHNMDGFFVAKLKKLSNAK--TAKPQ 385
>gi|409045898|gb|EKM55378.1| hypothetical protein PHACADRAFT_255965 [Phanerochaete carnosa
HHB-10118-sp]
Length = 704
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/430 (59%), Positives = 316/430 (73%), Gaps = 5/430 (1%)
Query: 7 EESDEFRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK 65
EE EF+LPT EE EEEK+ P + +QRR++E VR+L+NF+ + KG SR EYV QL
Sbjct: 266 EEGGEFQLPTAEEREEEKKAGGPQVHVVQRRMRECVRILNNFRKHAAKGRSRSEYVAQLM 325
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
D+ SYYGYNEFL L ++FP E +E E+ E PRP+ +RTNTL+ RRRDLA LINR
Sbjct: 326 SDIASYYGYNEFLSEKLFQLFPVSEAIEFFEANEVPRPVTIRTNTLRARRRDLAQALINR 385
Query: 126 GVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185
GVNL+P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+AL PQ ERV+DM
Sbjct: 386 GVNLEPIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALGPQPGERVLDM 445
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APGGKTT++AALM+NTG+I+ANE+ +R KSLTAN+HR+G N +VC+YDG E PKV+
Sbjct: 446 ASAPGGKTTHMAALMQNTGVIFANELNKARTKSLTANVHRLGCKNVVVCSYDGREFPKVM 505
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
G DRVLLDAPCSGTGVISKD SVKT+K+ D S+LQKQLIL AID V +SK+G
Sbjct: 506 G--GFDRVLLDAPCSGTGVISKDASVKTNKTERDFTLLSHLQKQLILCAIDSVQPDSKTG 563
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
GY+VYSTCS+ V ENEAV+DYAL+KR +VKLV GL+FG GF +R F P + TRR
Sbjct: 564 GYLVYSTCSVTVDENEAVVDYALRKRPNVKLVETGLEFGVPGFKSYRGKTFDPRVSMTRR 623
Query: 365 FYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLM 424
FYPHVHNMDGFFVAK K +KK +A E + + DK E S++ L
Sbjct: 624 FYPHVHNMDGFFVAKFKVERRTKKAAAQSADEPEGEAASAFAFDDEADKAIIEESKEEL- 682
Query: 425 KKATTKAKDL 434
K+ + KAK L
Sbjct: 683 KRKSMKAKGL 692
>gi|307182612|gb|EFN69780.1| Putative RNA methyltransferase NOL1 [Camponotus floridanus]
Length = 696
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 228/374 (60%), Positives = 299/374 (79%), Gaps = 6/374 (1%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F PT+EE+ +L ++Q+RI++++ VLS+FK L +K SR EY + L+ DL +Y
Sbjct: 324 FSFPTEEEL----ANVTNLKDIQQRIRDVIIVLSDFKRLREKNRSRSEYTELLRRDLCTY 379
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y YN FL+ L+++FP EL+E +E+ E RP+ +RTNTLKTRRRDLA+ LI+RGVNLDP
Sbjct: 380 YSYNNFLMEKLMQIFPLDELLEFLEASEVERPMTIRTNTLKTRRRDLAEALISRGVNLDP 439
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KW+KVGLVVY SQVP+GATPEY+AG Y++Q A+SFLPVM L P+E ER++DM AAPGG
Sbjct: 440 IGKWTKVGLVVYSSQVPMGATPEYLAGHYIIQGAASFLPVMVLEPRENERILDMCAAPGG 499
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KT++IAALMKNTG+++AN++ RLK++ NLHR+GV N+I+CNYDG + P + + D
Sbjct: 500 KTSHIAALMKNTGILFANDVNKDRLKAVVGNLHRIGVVNSIICNYDGRQFPTI--MKGFD 557
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLDAPC+GTGVI+KD SVKT+K DIQ+C LQ++L+LAAID V+A S++GG IVYS
Sbjct: 558 RVLLDAPCTGTGVIAKDLSVKTNKEEVDIQRCCTLQRELLLAAIDCVNARSETGGIIVYS 617
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCSI+ ENE +IDYALKKR+VKL+P GL+FG GF +R+HRFHPSL+ T+R+YPHVHN
Sbjct: 618 TCSILPEENEWIIDYALKKRNVKLLPTGLEFGADGFTSYRQHRFHPSLKLTKRYYPHVHN 677
Query: 372 MDGFFVAKLKKMSN 385
M GFFVAKLKK SN
Sbjct: 678 MYGFFVAKLKKFSN 691
>gi|328767857|gb|EGF77905.1| hypothetical protein BATDEDRAFT_1711 [Batrachochytrium
dendrobatidis JAM81]
Length = 445
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/383 (61%), Positives = 296/383 (77%), Gaps = 4/383 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+++N+ EE ++F LP+ E+IE++ + D+ + RI E++RVLSNFK + + SR EY
Sbjct: 66 LKINL-EEREKFVLPSGEDIEKDSDETEDIAMVHTRINEVIRVLSNFKTMREADRSRSEY 124
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QL D+ YYGYN FL L +F E++E E+ E RP+ +R NTLKTRRRDLA
Sbjct: 125 VDQLIKDIAYYYGYNHFLAEKLFHLFDLGEVIEFFEANEVARPVVIRANTLKTRRRDLAQ 184
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNL+P+ KWSKVG+ V+DS VPIGATPEY+AG YMLQ+A+SFLPVM+LAPQ E
Sbjct: 185 CLINRGVNLEPIGKWSKVGIQVFDSPVPIGATPEYLAGHYMLQAAASFLPVMSLAPQSNE 244
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM AAPGGKTTYIAALMKNTG ++AN++ RLKSL AN HRMGV NT+VC YDG +
Sbjct: 245 RILDMCAAPGGKTTYIAALMKNTGCLFANDISKDRLKSLNANCHRMGVRNTVVCCYDGKQ 304
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P V+G DRVLLDAPCSGTGVISKD+SVK +K ED Q + +QK+LIL+AID +DA
Sbjct: 305 FPNVIG--GFDRVLLDAPCSGTGVISKDQSVKINKGDEDFQILTQIQKELILSAIDSIDA 362
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSL 359
+S +GGY+VYSTC+I V ENE VI+YAL +R +VKLV GLDFGR+GF+ FR +FHPS+
Sbjct: 363 HSSTGGYLVYSTCAITVEENEEVINYALNRRPNVKLVDSGLDFGREGFISFRGKQFHPSM 422
Query: 360 EKTRRFYPHVHNMDGFFVAKLKK 382
TRR+YPH NMDGFFVAKLKK
Sbjct: 423 ALTRRYYPHTQNMDGFFVAKLKK 445
>gi|326436780|gb|EGD82350.1| hypothetical protein PTSG_03014 [Salpingoeca sp. ATCC 50818]
Length = 880
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/385 (61%), Positives = 296/385 (76%), Gaps = 3/385 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
M N+ ++SD+F LP+ +EIE DL +Q RIKE + L +FK + SR EY
Sbjct: 232 MMTNV-DKSDKFALPSLDEIESMNNITEDLMVIQMRIKENMNTLQDFKTMRDPARSRSEY 290
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
LK DL +YYGYNE ++ L+++FP EL++ +E+ E RP+ +RTNTL+TR+RDL
Sbjct: 291 TTLLKKDLCTYYGYNECMMQRLMDLFPLNELVDALEANEVRRPVTIRTNTLRTRQRDLMQ 350
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
L NRGV+LD + WSKVGLVV++S VPIGATPEY+ G Y++QSASSFLPVMALAPQ E
Sbjct: 351 ALSNRGVSLDSVGNWSKVGLVVFESNVPIGATPEYLCGHYIIQSASSFLPVMALAPQPNE 410
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMAAAPGGKTTYIAALMKNTG+++AN+ +R+KSL AN+ R+GVTNT+VCNYDG
Sbjct: 411 RVLDMAAAPGGKTTYIAALMKNTGVLFANDANKARIKSLAANISRLGVTNTVVCNYDGRS 470
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P V+G DR+LLDAPCSG+GVISKD S K +K D ++CS LQK+LILAAID VDA
Sbjct: 471 FPTVIG--GFDRILLDAPCSGSGVISKDASAKNTKDETDFRRCSTLQKELILAAIDSVDA 528
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSK+GGYIVYSTCSIMV ENE V++YAL+KR+VKLV GL FGR GF +R F +++
Sbjct: 529 NSKTGGYIVYSTCSIMVDENEEVVNYALRKRNVKLVDTGLTFGRPGFKSYRGKHFPDTMQ 588
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN 385
TRRFYPHVHNMDGFFVAKLKK+SN
Sbjct: 589 LTRRFYPHVHNMDGFFVAKLKKLSN 613
>gi|195442109|ref|XP_002068802.1| GK17973 [Drosophila willistoni]
gi|194164887|gb|EDW79788.1| GK17973 [Drosophila willistoni]
Length = 866
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/377 (61%), Positives = 293/377 (77%), Gaps = 9/377 (2%)
Query: 12 FRLPTKEEIEEEKQQPPDLP--NLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
F+LP+ E+ EE+ DL + +RIK++ VLS+FK Q +R EY+ L+ DL
Sbjct: 255 FQLPSPEDDEEK-----DLTIQEVMQRIKDVTLVLSDFKKYRQADRARSEYIDLLRHDLC 309
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
YY YNEFL+ L++MFP ELME +E+ E RP+ +RTN+LKTRRRDLA LINRGVNL
Sbjct: 310 LYYSYNEFLMEKLMDMFPLNELMEYLEASEVARPLTIRTNSLKTRRRDLAGALINRGVNL 369
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
DPL KW+KVGLVV++SQVP+GATPEY+AG YM+Q ASS LPVMALAPQE ER++DM +AP
Sbjct: 370 DPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSMLPVMALAPQENERILDMCSAP 429
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGK ++IAA+MKNTG+++AN+ R+K++ AN HR+G+ N +V DG + + +
Sbjct: 430 GGKGSHIAAIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNI--MTG 487
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID VDA S SGGYIV
Sbjct: 488 FDRVLLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSSGGYIV 547
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTCS++ ENE VIDYALKKR+VKLVP GLDFG +GFV FR+HRFHPSL TRR+YPH
Sbjct: 548 YSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFVNFRQHRFHPSLNLTRRYYPHT 607
Query: 370 HNMDGFFVAKLKKMSNS 386
HNMDGF+VAKLKK SN+
Sbjct: 608 HNMDGFYVAKLKKFSNT 624
>gi|156842997|ref|XP_001644568.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156115214|gb|EDO16710.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 633
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/385 (60%), Positives = 299/385 (77%), Gaps = 11/385 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+EE+E QPPDL ++ RI EIV+VL +F++L+ +G SR EY+ +L D+ SY+G
Sbjct: 196 LPTEEELELMADQPPDLTAVRTRILEIVKVLEDFRNLAAEGRSRTEYIDRLLKDICSYFG 255
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+ FL + +F P E +E E+ E PRPI +RTNTLKTRRRDLA L+N+GVNL P+
Sbjct: 256 YSPFLAEKIFNLFSPAEALEFFEANEVPRPISIRTNTLKTRRRDLAQALVNKGVNLQPIG 315
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGAT EY+AG Y+LQ+ASSFLPV+AL PQE ERV+DMAAAPGGKT
Sbjct: 316 AWTKVGLQIFDSQVPIGATSEYLAGQYILQAASSFLPVVALDPQENERVLDMAAAPGGKT 375
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 376 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 433
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK+S++ +D + +LQKQL+L+AID VDANSK+GG IVYSTC
Sbjct: 434 LLDAPCSGTGVIGKDQSVKSSRTEKDFIQIPHLQKQLLLSAIDSVDANSKTGGVIVYSTC 493
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +VKLV GL G++GF FR +FHPSL+ TRR+YPH +N+
Sbjct: 494 SVAVEEDEAVVDYALRKRPNVKLVESGLAIGKEGFTSFRGKKFHPSLKLTRRYYPHTYNV 553
Query: 373 DGFFVAKLKKMSNSKKTSAGPQPSE 397
DGF+VAK +K+ GP P +
Sbjct: 554 DGFYVAKFQKI--------GPSPHD 570
>gi|443698466|gb|ELT98442.1| hypothetical protein CAPTEDRAFT_159088 [Capitella teleta]
Length = 708
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/376 (61%), Positives = 290/376 (77%), Gaps = 3/376 (0%)
Query: 10 DEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
D F LP+ +EI + + DL + +RIKEI+ VL +FK+ Q+G SR EY +QLK DL
Sbjct: 203 DTFVLPSGQEISKPSTESSDLTLINQRIKEILEVLGDFKERKQEGRSRAEYTEQLKQDLC 262
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
YY YNE+L+ L+++FP +++E +E+ E RP+ +RTNTLKTRRRDLA LI RGVNL
Sbjct: 263 LYYSYNEYLMERLLDLFPQ-DIVEFLEANEVQRPVTIRTNTLKTRRRDLAQALITRGVNL 321
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
DP+ KWSKVGLVVYD+QVP+GATPEY+AG YMLQ SS LPVM+LAPQE E ++DMAAAP
Sbjct: 322 DPIGKWSKVGLVVYDTQVPLGATPEYLAGHYMLQGGSSLLPVMSLAPQEGETILDMAAAP 381
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGKTTYI LM+NTG + AN+ R K++ AN HR+G+TNT++ +G +P V +
Sbjct: 382 GGKTTYIGQLMRNTGKLVANDANRERTKAVVANCHRLGLTNTVITCLNGKSIPSV--MKD 439
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPCSGTGVI+KD++VK SK +DIQ+CS+LQK+LILAAID A S SGGYIV
Sbjct: 440 FDRVLLDAPCSGTGVIAKDQAVKLSKDYDDIQRCSHLQKELILAAIDACTAESTSGGYIV 499
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTCS+++ ENEAV++YAL KR+VKLVP GL FG GF FR+H FH S++ RRFYPH
Sbjct: 500 YSTCSVLMEENEAVVNYALSKRNVKLVPTGLSFGTPGFTNFRQHHFHSSMKLARRFYPHT 559
Query: 370 HNMDGFFVAKLKKMSN 385
HN+DGFFVAKLKK S+
Sbjct: 560 HNLDGFFVAKLKKFSD 575
>gi|363750754|ref|XP_003645594.1| hypothetical protein Ecym_3284 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889228|gb|AET38777.1| Hypothetical protein Ecym_3284 [Eremothecium cymbalariae
DBVPG#7215]
Length = 606
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/375 (62%), Positives = 295/375 (78%), Gaps = 3/375 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E E+ PP+L ++ R+ EIV+VL NFK L+++ SR EYV +L D+ Y+G
Sbjct: 170 LPTEEQEEIEEHNPPNLTAIRTRMIEIVKVLENFKSLAEENKSRSEYVARLLKDICKYFG 229
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YN FL L +F P E +E E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 230 YNSFLAEKLFNLFSPAEALEFFEANEVSRPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 289
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL PQE ER++DMAAAPGGKT
Sbjct: 290 TWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPQENERILDMAAAPGGKT 349
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 350 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 407
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KD+SVK S++ +D + +LQKQLIL+AID VD+NSK+GG IVYSTC
Sbjct: 408 LLDAPCSGTGVIAKDQSVKVSRTEKDFMQIPHLQKQLILSAIDSVDSNSKTGGIIVYSTC 467
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV GL G++GF +R +FHPS+ TRR+YPH +N+
Sbjct: 468 SVAVEENEAVVDYALRKRPNVKLVDSGLAIGKEGFTSYRGKKFHPSINLTRRYYPHTYNV 527
Query: 373 DGFFVAKLKKMSNSK 387
DGFFVAK KK++ SK
Sbjct: 528 DGFFVAKFKKLAPSK 542
>gi|195119298|ref|XP_002004168.1| GI19747 [Drosophila mojavensis]
gi|193909236|gb|EDW08103.1| GI19747 [Drosophila mojavensis]
Length = 839
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/519 (50%), Positives = 353/519 (68%), Gaps = 35/519 (6%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ++I ++S+ FRLP E E+ + L ++Q+RIK+I++VLS+F Q+G SR EY
Sbjct: 252 MQMSI-DQSEVFRLP---EPGEDADKELSLQDVQQRIKDIIQVLSDFGKYRQEGRSRSEY 307
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QL+LDL YY YNEFL+ L+++F +LME +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 308 VDQLRLDLCLYYSYNEFLMSKLMDIFKLSDLMEYLEASEVARPLTIRTNSLKTRRRDLAG 367
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KW+ VGLV+++S VP+GATPEY+AG YM+Q ASS LPV+ALAPQE E
Sbjct: 368 ALINRGVNLDPLGKWTNVGLVIFNSTVPLGATPEYLAGHYMIQGASSMLPVIALAPQENE 427
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM +APGGK ++IAA+MKNTG+++AN+ R+K++ AN HR+G+ N IV D +
Sbjct: 428 RILDMCSAPGGKGSHIAAVMKNTGVLFANDANRDRIKAVVANFHRLGIVNAIVSCEDATK 487
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ + DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID VDA
Sbjct: 488 FRNI--MTGFDRVLLDAPCTGTGVVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDA 545
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GGY+VYSTCS++ ENE VIDYALKKR+VKLVP G+DFG GF +FR+HR+HPSL
Sbjct: 546 KSSTGGYVVYSTCSVLPEENEWVIDYALKKRNVKLVPLGIDFGEPGFTKFRQHRYHPSLN 605
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSN----GDKKTE 416
RRFYPH +NMDGFFVAKLKK SN+ + Q E E+Q E+ S+ D +T+
Sbjct: 606 LCRRFYPHTNNMDGFFVAKLKKFSNTIPITKEQQ--EADEKQLDEALASDQTESNDAETK 663
Query: 417 --------ENSEQVLMKKA-----TTKAKDLKKKTSGLAENGNV----ESP--SNEKRRK 457
E + L K+A T DLKKK ++ + E P + K +
Sbjct: 664 AAEAVEVTEGRRKALGKRAGKPSLTDVEHDLKKKKLEQSKTKYIAKVFEKPIKVSSKSKP 723
Query: 458 KRKFPSREEISKVREEKRKTLREKVSSKKAGSKDKGNEK 496
+R P EE +EEK KV SK+ + GN+K
Sbjct: 724 ERTLPVSEE----KEEKTSAASSKVQSKQPTPQSNGNKK 758
>gi|332018753|gb|EGI59318.1| Putative ribosomal RNA methyltransferase NOP2 [Acromyrmex
echinatior]
Length = 677
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 222/375 (59%), Positives = 294/375 (78%), Gaps = 6/375 (1%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F P EE+ +L ++Q+RI++++ VLS+FK L +K SR EY + L++DL +Y
Sbjct: 296 FSFPNDEEL----TNVTNLKDIQQRIRDVIMVLSDFKKLREKNRSRSEYTELLRMDLCTY 351
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y YN FL+ L+++FP EL+E +E+ E RP+ +R NTLKTRRRDLA+ LINRGVNLDP
Sbjct: 352 YSYNNFLMEKLMQIFPLDELLEFLEASEVQRPMTIRANTLKTRRRDLAEALINRGVNLDP 411
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KW+K+GLVVY SQVP+GATPEY+AG YM+Q ASSFLPVMAL P+E ER++DM AAPGG
Sbjct: 412 IGKWTKIGLVVYSSQVPMGATPEYLAGHYMIQGASSFLPVMALDPKENERILDMCAAPGG 471
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K ++IAA+MKNTG ++AN++ RLK++ N HR+G+ N ++C+YDG + P + + D
Sbjct: 472 KASHIAAIMKNTGTLFANDLNKERLKAVVGNFHRLGIVNCVICSYDGRKFPTI--IKGFD 529
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLDAPC+GTGV++KD SVK +K+ DIQ+C LQ++L+LAAID V+A S+SG IVYS
Sbjct: 530 RVLLDAPCTGTGVVAKDPSVKANKAEVDIQRCCTLQRELLLAAIDCVNARSESGAIIVYS 589
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCSI+ ENE +IDYALKKRDVKL+P L+FG GF +R++RFHPSL+ T+RFYPHVHN
Sbjct: 590 TCSILPEENEWIIDYALKKRDVKLLPTDLEFGTDGFTSYRQYRFHPSLKLTKRFYPHVHN 649
Query: 372 MDGFFVAKLKKMSNS 386
MDGFFVAKLKK SN+
Sbjct: 650 MDGFFVAKLKKFSNN 664
>gi|443926035|gb|ELU44783.1| nucleolar RNA m(5)C methyltransferase [Rhizoctonia solani AG-1 IA]
Length = 915
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/379 (63%), Positives = 295/379 (77%), Gaps = 6/379 (1%)
Query: 12 FRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGS 70
F+LPT EE E+EK PD+ +Q R+ E V+VL++FK+L+ +G SR EY +QL D+ S
Sbjct: 459 FKLPTTEEREKEKAAGGPDVQEVQMRMAECVKVLNDFKNLAAEGRSRSEYTEQLISDIAS 518
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
YYGYNEFL L E+F E +E E+ E PRP+ +RTNTL+ RRRDLA LINRGVNL+
Sbjct: 519 YYGYNEFLAEKLFELFSVSEAIEFFEANEVPRPVTIRTNTLRARRRDLAQALINRGVNLE 578
Query: 131 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPG 190
P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+ALAPQ ERV+DMA+APG
Sbjct: 579 PIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALAPQPNERVLDMASAPG 638
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
GKTT++AALM+NTGLI+AN+ +R KSL+AN+HR+G N +VC+YDG E PKVLG
Sbjct: 639 GKTTHMAALMQNTGLIFANDANKARTKSLSANVHRLGCKNVVVCSYDGREFPKVLG--GF 696
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
DRVLLDAPCSGTGVISKD SVKT+K D S+LQKQLIL AID VDA+SK+GGYIVY
Sbjct: 697 DRVLLDAPCSGTGVISKDASVKTNK--RDFTLLSHLQKQLILCAIDSVDASSKTGGYIVY 754
Query: 311 STCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STCS+ V ENE+V+DYAL+KR +VKLV GL+FG GF +FR +F L TRRFYPHV
Sbjct: 755 STCSVTVDENESVVDYALRKRPNVKLVDTGLEFGVPGFTKFRGKKFDEKLSLTRRFYPHV 814
Query: 370 HNMDGFFVAKLKKMSNSKK 388
HNMDGF+VAK+K KK
Sbjct: 815 HNMDGFYVAKIKIEKRQKK 833
>gi|22024126|ref|NP_610786.2| CG8545 [Drosophila melanogaster]
gi|21627400|gb|AAF58504.2| CG8545 [Drosophila melanogaster]
gi|254039763|gb|ACT56594.1| LD11307p [Drosophila melanogaster]
Length = 891
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/384 (59%), Positives = 294/384 (76%), Gaps = 5/384 (1%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
L ++ D F+LP + E E ++ L +Q+RIK++ VLS+FK Q SR EY+
Sbjct: 263 LETVDKQDVFQLPVEGE---ETEKDLTLQEVQQRIKDVSLVLSDFKRYRQADRSRGEYID 319
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVL 122
L+ DL YY YNEFL+ L++M P ELME +E+ E RP+ +RTNTLKTRRRDLA L
Sbjct: 320 LLRRDLCLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGAL 379
Query: 123 INRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182
INRGVNLDPL KW+KVGLVV++SQVP+GATPEY+AG YM+Q ASS LPVMALAPQE ER+
Sbjct: 380 INRGVNLDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERI 439
Query: 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242
+DM +APGGK ++IA++MKNTG+++AN+ R+K++ AN HR+G+ N +V DG +
Sbjct: 440 LDMCSAPGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFR 499
Query: 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+ + DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID DA S
Sbjct: 500 NI--MTGFDRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKS 557
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
+GGYIVYSTCS++ ENE VIDYALKKR+VKLVP GLDFG +GF +FR+HRFHPSL T
Sbjct: 558 STGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHRFHPSLNLT 617
Query: 363 RRFYPHVHNMDGFFVAKLKKMSNS 386
+R+YPH HNMDGF+VAKLKK SN+
Sbjct: 618 KRYYPHTHNMDGFYVAKLKKFSNT 641
>gi|406607907|emb|CCH40755.1| hypothetical protein BN7_289 [Wickerhamomyces ciferrii]
Length = 632
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 243/429 (56%), Positives = 322/429 (75%), Gaps = 9/429 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+EE ++ P D+ L+ R+ EIV+VL +FK+ +++G SR EY +L D+ Y+G
Sbjct: 195 LPTEEEEAQQSSGPKDVNILRTRMIEIVKVLEDFKNSAEEGKSRVEYTNRLIQDICDYFG 254
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 255 YTPFLAEKLFNLFSPSEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 314
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLP MALAPQE ERV+DMA+APGGKT
Sbjct: 315 PWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPCMALAPQENERVLDMASAPGGKT 374
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TY++ALMKNTG I+AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 375 TYLSALMKNTGCIFANDSNKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 432
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVKTS++ +D + +LQKQL+L+AID VDA+S +GGYIVYSTC
Sbjct: 433 LLDAPCSGTGVIAKDESVKTSRTEKDFIQIPHLQKQLLLSAIDSVDAHSPTGGYIVYSTC 492
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+MV ENEAV+DYAL+KR +VKLV GL+ G+ GF FR F+ L T+R+YPH +N+
Sbjct: 493 SVMVEENEAVVDYALRKRPNVKLVDTGLEIGKDGFTSFRGKHFNSKLNLTKRYYPHTYNV 552
Query: 373 DGFFVAKLKKMSNSKK--TSAGPQPSETVEQ-QTPESNVSNGDKKT-EENSEQVLMKKAT 428
DGF+VAK KK+++S + AG E++ + + E + +GD + ++ ++ L++K
Sbjct: 553 DGFYVAKFKKIASSPHDVSKAGAYEKESLARSEAEEEGIIHGDFASFNDDEDKDLIEK-- 610
Query: 429 TKAKDLKKK 437
+KA++LKKK
Sbjct: 611 SKARNLKKK 619
>gi|195485322|ref|XP_002091044.1| GE12467 [Drosophila yakuba]
gi|194177145|gb|EDW90756.1| GE12467 [Drosophila yakuba]
Length = 902
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/384 (59%), Positives = 293/384 (76%), Gaps = 5/384 (1%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
L + D F+LP + E E ++ L +Q+RIK++ VLS+FK Q SR EY+
Sbjct: 273 LETVDRQDVFQLPVEGE---ETEKDLTLQEVQQRIKDVSLVLSDFKKYRQADRSRGEYID 329
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVL 122
L+ DL YY YNEFL+ L++M P ELME +E+ E RP+ +RTNTLKTRRRDLA L
Sbjct: 330 LLRRDLCLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGAL 389
Query: 123 INRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182
INRGVNLDPL KW+KVGLVV++SQVP+GATPEY+AG YM+Q ASS LPVMALAPQE ER+
Sbjct: 390 INRGVNLDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERI 449
Query: 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242
+DM +APGGK ++IA++MKNTG+++AN+ R+K++ AN HR+G+ N +V DG +
Sbjct: 450 LDMCSAPGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFR 509
Query: 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+ + DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID DA S
Sbjct: 510 NI--MTGFDRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKS 567
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
+GGYIVYSTCS++ ENE VIDYALKKR+VKLVP GLDFG +GF +FR+HRFHPSL T
Sbjct: 568 STGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHRFHPSLNLT 627
Query: 363 RRFYPHVHNMDGFFVAKLKKMSNS 386
+R+YPH HNMDGF+VAKLKK SN+
Sbjct: 628 KRYYPHTHNMDGFYVAKLKKFSNT 651
>gi|452841420|gb|EME43357.1| hypothetical protein DOTSEDRAFT_72685 [Dothistroma septosporum
NZE10]
Length = 660
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/423 (56%), Positives = 304/423 (71%), Gaps = 18/423 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ NI + DE EE + PDL L+ RI E VRVL+NFKDL+ G SR +Y
Sbjct: 192 MQTNIAADLDE-----DEEASKSSMLAPDLQMLRTRITETVRVLTNFKDLAVPGKSRADY 246
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
Q L D+ +YYGY+ FL L +FPP E + ++ E PRP+ +RTNTL+T RRDLA
Sbjct: 247 TQALLKDICTYYGYSPFLAEKLYSLFPPQEALAFFDANETPRPMVIRTNTLRTHRRDLAH 306
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGV L+P+ KWSKVGL +++SQVP+GATPEY+AG Y+LQ+ASSFLPVMALAPQE E
Sbjct: 307 SLINRGVTLEPVGKWSKVGLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQEHE 366
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMAAAPGGKTT++AALM+NTG I++N+ R K L N+HR+GV NTIVCNY +
Sbjct: 367 RVLDMAAAPGGKTTHLAALMRNTGCIFSNDANKDRAKGLIGNIHRLGVKNTIVCNYSALQ 426
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P+V+G DRVLLDAPCSGTGVI+KD SVKT+K+ D + +LQKQL+LAA+D VD
Sbjct: 427 FPRVMG--GFDRVLLDAPCSGTGVIAKDASVKTNKTEADFLRLPHLQKQLLLAAVDSVDH 484
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSL 359
SK+GG+IVYSTCS+ V E+E V+ Y L KR ++KLVP GL FG++GF R++ RFHPS+
Sbjct: 485 ASKTGGFIVYSTCSVTVEEDEQVVQYVLNKRPNIKLVPTGLVFGKEGFTRYQSKRFHPSM 544
Query: 360 EKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQ--TPESNVSNGDKKTEE 417
++TRR+YPH +N+DGFFVAKLKK GP P+ V+ Q E D TEE
Sbjct: 545 KETRRYYPHAYNVDGFFVAKLKKT--------GPTPANAVKAQGSAEEKKQHVNDSTTEE 596
Query: 418 NSE 420
++E
Sbjct: 597 DAE 599
>gi|194883628|ref|XP_001975903.1| GG20307 [Drosophila erecta]
gi|190659090|gb|EDV56303.1| GG20307 [Drosophila erecta]
Length = 897
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/384 (59%), Positives = 293/384 (76%), Gaps = 5/384 (1%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
L + D F+LP + E E ++ L +Q+RIK++ VLS+FK Q SR EY+
Sbjct: 270 LETVDRQDVFQLPVEGE---ETEKDLTLQEVQQRIKDVSLVLSDFKKYRQADRSRGEYID 326
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVL 122
L+ DL YY YNEFL+ L++M P ELME +E+ E RP+ +RTNTLKTRRRDLA L
Sbjct: 327 LLRRDLCLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGAL 386
Query: 123 INRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182
INRGVNLDPL KW+KVGLVV++SQVP+GATPEY+AG YM+Q ASS LPVMALAPQE ER+
Sbjct: 387 INRGVNLDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERI 446
Query: 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242
+DM +APGGK ++IA++MKNTG+++AN+ R+K++ AN HR+G+ N +V DG +
Sbjct: 447 LDMCSAPGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFR 506
Query: 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+ + DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID DA S
Sbjct: 507 NI--MTGFDRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKS 564
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
+GGYIVYSTCS++ ENE VIDYALKKR+VKLVP GLDFG +GF +FR+HRFHPSL T
Sbjct: 565 STGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHRFHPSLNLT 624
Query: 363 RRFYPHVHNMDGFFVAKLKKMSNS 386
+R+YPH HNMDGF+VAKLKK SN+
Sbjct: 625 KRYYPHTHNMDGFYVAKLKKFSNT 648
>gi|402589831|gb|EJW83762.1| NOL1/NOP2/sun family protein, partial [Wuchereria bancrofti]
Length = 382
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 224/380 (58%), Positives = 303/380 (79%), Gaps = 2/380 (0%)
Query: 9 SDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDL 68
++ ++LP+ EEIE+E +Q P+L +++RI ++ +VL +FK+ SR +Y+ L DL
Sbjct: 2 AERYKLPSVEEIEDELKQTPNLKIIKQRISDVFQVLGDFKNRRDPDRSRGDYISILTKDL 61
Query: 69 GSYYGYNEFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
SYYGYNE+LI + +FP EL+E +E+ ++PRP+ +R+N+LKTRR +LA LINRG+
Sbjct: 62 CSYYGYNEYLIQKFMSIFPNGTELLEFLEANDQPRPVIIRSNSLKTRRAELARNLINRGM 121
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
N+DP ++W+K+GL+VYDSQVP+GATPEY+AG YMLQ SSFLPVMALAP+ +E ++D+ +
Sbjct: 122 NVDPAAEWTKIGLIVYDSQVPVGATPEYLAGHYMLQGLSSFLPVMALAPRPEETILDVCS 181
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGK+++IAALMKNTG++YAN+ R +++ NLHR+GV N +V N DG E K++
Sbjct: 182 APGGKSSHIAALMKNTGVLYANDANMQRCRAVIGNLHRLGVNNAVVSNLDGREFAKIMP- 240
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
DRVLLDAPCSGTGVI KD SVKT + +D+Q+C LQ++LILAA+D ++ANSK+GGY
Sbjct: 241 QGFDRVLLDAPCSGTGVIWKDGSVKTRRDSQDVQRCHTLQRELILAALDSINANSKTGGY 300
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
+VYSTCS++V ENEAV+DYAL+KRD KLVP GLD G QGF +FRE+RFHPSL TRR+YP
Sbjct: 301 LVYSTCSVLVEENEAVVDYALRKRDCKLVPMGLDVGVQGFTKFREYRFHPSLCLTRRYYP 360
Query: 368 HVHNMDGFFVAKLKKMSNSK 387
HVHN+DGFFVAK KK+SNSK
Sbjct: 361 HVHNIDGFFVAKFKKLSNSK 380
>gi|328784827|ref|XP_001121968.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Apis
mellifera]
Length = 657
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 226/374 (60%), Positives = 295/374 (78%), Gaps = 6/374 (1%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F P++EE+ + +L ++Q+RIK+IV +LS+FK L SR EY+ L+ DL +Y
Sbjct: 277 FTFPSEEELAD----ITNLKDVQQRIKDIVMILSDFKRLRDINRSRSEYMNLLRRDLCTY 332
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y YN FL+ L+++F EL+E +E+ E RP+ +RTN LKTRRRDLA+ LINRGVNLDP
Sbjct: 333 YSYNNFLMEKLMQIFSLDELLEFLEASEVQRPMTIRTNILKTRRRDLAEALINRGVNLDP 392
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KW+KVGLVVY SQVP+GATPEY+AG Y+LQ ASSFLPVMAL P+E E+++DM AAPGG
Sbjct: 393 IGKWTKVGLVVYSSQVPMGATPEYLAGHYILQGASSFLPVMALDPKENEKILDMCAAPGG 452
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K+++IAALMKNTG++++N++ R+K++ N HR+G+TN++VC YDG +LP V + D
Sbjct: 453 KSSHIAALMKNTGVLFSNDVNEERIKAVVGNFHRLGITNSVVCTYDGRKLPSV--IKNFD 510
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLDAPC+GTGV+SKD SVKT+K DIQ+C LQ++L+LAAID +A S+SGG IVYS
Sbjct: 511 RVLLDAPCTGTGVVSKDPSVKTNKDEIDIQRCCTLQRELLLAAIDCANARSESGGIIVYS 570
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCSI+ ENE +IDYALKKRDVKL+ GL+FG +GF +R+ RFHPSL+ T+RFYPH HN
Sbjct: 571 TCSILPEENEWIIDYALKKRDVKLISTGLEFGAEGFTSYRQFRFHPSLKLTKRFYPHTHN 630
Query: 372 MDGFFVAKLKKMSN 385
MDGFFVAKLKK SN
Sbjct: 631 MDGFFVAKLKKFSN 644
>gi|313225604|emb|CBY07078.1| unnamed protein product [Oikopleura dioica]
Length = 700
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/477 (51%), Positives = 332/477 (69%), Gaps = 8/477 (1%)
Query: 10 DEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
++F LP+ +EIE+EK P D+ ++ RI+E + L NFKD + G +R EY++ L+ D+
Sbjct: 127 EKFVLPSGQEIEKEKSAPLDVAIIKNRIEENISALKNFKDKREDGKTRAEYLELLRGDIK 186
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
YYGYNE+L E+ P +L+ E+ E RP+ +RTNTLK RRR+LA LINRGVNL
Sbjct: 187 YYYGYNEYLCERFTELIPLDQLVAFFEANEVHRPVTIRTNTLKCRRRELAQALINRGVNL 246
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
DP+ KWSKVGLV+YDS VPIGATPEY+AG YMLQSASSFLPVMALAPQE E+V+DM AAP
Sbjct: 247 DPVGKWSKVGLVIYDSAVPIGATPEYLAGHYMLQSASSFLPVMALAPQEGEKVLDMCAAP 306
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGKTTYI+ LMKNTG++ AN+ R+K+L AN HR+G +N CNYDG P + G
Sbjct: 307 GGKTTYISQLMKNTGMVLANDKNKLRMKALVANSHRLGCSNVATCNYDGRSFPTIQG--G 364
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRV+ DAPC+GTGVI+KD S K SK +D+++ ++QK+L+LAAID VDA SK+GGYI+
Sbjct: 365 FDRVICDAPCAGTGVIAKDPSAKLSKEDKDVRRIVHIQKELLLAAIDSVDAKSKTGGYII 424
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
Y TCS++V ENE V+DY LK R+VKLV GL+ G +GF ++R RFHPS+ KT+R+YPH+
Sbjct: 425 YCTCSLLVEENEWVVDYGLKNRNVKLVETGLELGEEGFTKYRSWRFHPSMNKTKRYYPHI 484
Query: 370 HNMDGFFVAKLKKMSNS-KKTSAGPQPSETVE-QQTPESNVSNGDKKTEENSEQVLMKKA 427
+NMDGFF+AK KK SN + A P ++TV + S +S+ +KT + +++A
Sbjct: 485 NNMDGFFIAKFKKTSNDIPEKQAKPGKNDTVPGDENDYSTMSDDGEKTSDRDSGAEVEEA 544
Query: 428 TTKAKDLKKKTSG----LAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKTLRE 480
T ++ K + L +G+ + K +KK K ++E+ K EEK K + E
Sbjct: 545 PTSSRKKKGLKTKKGQLLVRSGSKAPVTKPKEQKKDKQVAKEKSEKPAEEKSKKVFE 601
>gi|50291427|ref|XP_448146.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527457|emb|CAG61097.1| unnamed protein product [Candida glabrata]
Length = 619
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/385 (61%), Positives = 291/385 (75%), Gaps = 11/385 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP+KEE E Q PPDL +++ RI EIV+VL +FK L +G SR EY +L D+ Y+G
Sbjct: 184 LPSKEEEELMAQNPPDLTSIRTRIIEIVKVLEDFKTLGAEGRSRSEYTDRLLKDICEYFG 243
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E +E E+ E RPI +RTNTLKT RRDLA L+NRGVNL P+
Sbjct: 244 YTPFLAEKLFNLFSPAEALEFFEANEIARPITIRTNTLKTSRRDLAQALVNRGVNLQPIG 303
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL PQE ERV+DMA+APGGKT
Sbjct: 304 SWTKVGLQIFDSQVPIGATPEYLAGNYILQAASSFLPVVALDPQENERVLDMASAPGGKT 363
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ R KSL AN+HR+G TNTIVCNYD E PKV+G DRV
Sbjct: 364 TYISALMKNTGCVFANDANKKRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRV 421
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VDANSK GG IVYSTC
Sbjct: 422 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSKKGGVIVYSTC 481
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +VKLV GL G++GFV FR +FHPSL+ TRR+YPH +N+
Sbjct: 482 SVAVEEDEAVVDYALRKRPNVKLVDTGLQIGKEGFVSFRGKKFHPSLKLTRRYYPHTYNV 541
Query: 373 DGFFVAKLKKMSNSKKTSAGPQPSE 397
DGFFVAK +K+ GP P +
Sbjct: 542 DGFFVAKFQKI--------GPSPHD 558
>gi|50425343|ref|XP_461265.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
gi|49656934|emb|CAG89654.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
Length = 611
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/395 (58%), Positives = 298/395 (75%), Gaps = 5/395 (1%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT EE EE P D+ + R+ EIV+VL NFK+++++G SR EYV +L D+ Y+G
Sbjct: 179 LPTAEEEEEMASGPQDVTMTRTRMIEIVKVLENFKEMAEEGKSRAEYVSRLLKDICEYFG 238
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 239 YSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 298
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKT
Sbjct: 299 SWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKT 358
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DR+
Sbjct: 359 TYISAMMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRI 416
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDE+VK S++ +D + +LQKQL+L+AID VDANS +GG IVYSTC
Sbjct: 417 LLDAPCSGTGVIAKDETVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSATGGVIVYSTC 476
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENE+V+DYAL+KR +VKLV GL G++GF +R F PS+ TRR+YPH +N+
Sbjct: 477 SVAVEENESVVDYALRKRPNVKLVDAGLQIGKEGFTSYRGKHFSPSISLTRRYYPHTYNV 536
Query: 373 DGFFVAKLKKMSNSKK--TSAGPQPSETVEQQTPE 405
DGF+VAK KK++ S + AG + E++ + E
Sbjct: 537 DGFYVAKFKKIAPSPHDISKAGAKEKESLARSEAE 571
>gi|68476951|ref|XP_717453.1| hypothetical protein CaO19.8131 [Candida albicans SC5314]
gi|68477142|ref|XP_717364.1| hypothetical protein CaO19.501 [Candida albicans SC5314]
gi|46439073|gb|EAK98395.1| hypothetical protein CaO19.501 [Candida albicans SC5314]
gi|46439166|gb|EAK98487.1| hypothetical protein CaO19.8131 [Candida albicans SC5314]
Length = 618
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/374 (61%), Positives = 291/374 (77%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT EE EE + P D+ ++ R+ E+V+VL NFK+L+++GTSR +Y +L D+ Y+G
Sbjct: 185 LPTAEEEEEMAKGPQDVTMVRTRMLEVVKVLENFKELAEEGTSRTDYTNRLLKDICEYFG 244
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+N+GVNL P+
Sbjct: 245 YSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVNLQPIG 304
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKT
Sbjct: 305 SWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKT 364
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DRV
Sbjct: 365 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRV 422
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDA+S +GG IVYSTC
Sbjct: 423 LLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVYSTC 482
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
SI V ENEAV+DYAL+KR +VKLV GL G++GF +R F+P + TRR+YPH +N+
Sbjct: 483 SIAVDENEAVVDYALRKRPNVKLVDTGLTIGKEGFTSYRGKHFNPKISLTRRYYPHTYNV 542
Query: 373 DGFFVAKLKKMSNS 386
DGF+VAK KK++ S
Sbjct: 543 DGFYVAKFKKIAPS 556
>gi|50546513|ref|XP_500726.1| YALI0B10560p [Yarrowia lipolytica]
gi|49646592|emb|CAG82971.1| YALI0B10560p [Yarrowia lipolytica CLIB122]
Length = 609
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/382 (60%), Positives = 297/382 (77%), Gaps = 5/382 (1%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT E E Q PPDL ++ RI EIV+VL +FK L+++G SR +Y QL D+ SYYG
Sbjct: 166 LPTAEAAAAEAQLPPDLHVVRTRILEIVKVLEDFKGLAEEGKSRNDYTTQLLKDICSYYG 225
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YNE+L L +F P E +E E+ E PRP+ +R NTLKTRRRDLA L+NRGVNL P+
Sbjct: 226 YNEYLAEKLFNLFTPSEAIEFFEANEVPRPVTIRANTLKTRRRDLAQSLVNRGVNLQPIG 285
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
KW+KVGL ++DS VPIGATPEY+ G Y+LQ+ASSFLPVMA+ PQE ERV+DMAA+PGGKT
Sbjct: 286 KWTKVGLQIFDSAVPIGATPEYLCGHYILQAASSFLPVMAMDPQEGERVLDMAASPGGKT 345
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG+++AN++ R+KSL AN+HR+G NT+VCNYD E PKV+G DR+
Sbjct: 346 TYISALMKNTGMVFANDVSKPRIKSLIANIHRLGCKNTVVCNYDAREFPKVIG--GFDRI 403
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD++VKT++S +D + +LQKQL+L+AID VDANS +GG IVYSTC
Sbjct: 404 LLDAPCSGTGVISKDQAVKTNRSEKDFIQLPHLQKQLLLSAIDSVDANSATGGVIVYSTC 463
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+MV ENEAV+DYAL+KR +V+LV GL+ G++GF FR F P L+ TRR+YPH +N+
Sbjct: 464 SVMVEENEAVVDYALRKRPNVRLVETGLEIGKEGFTSFRGKTFSPKLKLTRRYYPHTYNV 523
Query: 373 DGFFVAKLKKMSNS--KKTSAG 392
DGF+VAK +K++ S KT AG
Sbjct: 524 DGFYVAKFQKIAPSPQDKTKAG 545
>gi|367012029|ref|XP_003680515.1| hypothetical protein TDEL_0C04150 [Torulaspora delbrueckii]
gi|359748174|emb|CCE91304.1| hypothetical protein TDEL_0C04150 [Torulaspora delbrueckii]
Length = 614
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/427 (55%), Positives = 305/427 (71%), Gaps = 6/427 (1%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+EE E Q PPDL +++ R+ EIV+VL +FK+L + SR +Y +L D+ Y+G
Sbjct: 178 LPTEEEEEMMAQNPPDLTSIRTRMIEIVKVLEDFKNLGAENRSRADYTDRLLKDISEYFG 237
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 238 YVPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNRGVNLQPIG 297
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 298 SWTKVGLQIFDSQVPIGATPEYLAGNYILQAASSFLPVIALDPHENERILDMAAAPGGKT 357
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 358 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 415
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPC+GTGVI KD+SVK S++ +D + +LQKQL+L+AID VD+NSK+GG IVYSTC
Sbjct: 416 LLDAPCTGTGVIGKDQSVKVSRTEKDFIQVPHLQKQLLLSAIDSVDSNSKTGGIIVYSTC 475
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+E V+DYAL+KR +VKLV GL G++GF +R +FHPSL+ TRR+YPH +N+
Sbjct: 476 SVAVEEDEMVVDYALRKRPNVKLVEAGLAIGKEGFTSYRGKKFHPSLKLTRRYYPHTYNV 535
Query: 373 DGFFVAKLKKMSNSKKTSAGPQPSE---TVEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S P E Q+ E + + D +N E K +
Sbjct: 536 DGFFVAKFQKIGPSPHDDNQATPREKELAARQEAAEEGIIHSDFANFDNEEDEKYIKRSQ 595
Query: 430 KAKDLKK 436
K LKK
Sbjct: 596 KNSLLKK 602
>gi|17536757|ref|NP_493742.1| Protein NOL-1 [Caenorhabditis elegans]
gi|351050956|emb|CCD73642.1| Protein NOL-1 [Caenorhabditis elegans]
Length = 664
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/446 (51%), Positives = 331/446 (74%), Gaps = 14/446 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLNI ++ F LPT EEIE E + P+L +++RI ++++VL +FK+ SR+ Y
Sbjct: 128 LQLNIANQA-TFELPTVEEIENEMKSVPNLEIVKQRIADVIQVLGDFKNRRDPQKSRENY 186
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
V+ LK DL S YGYN++L+G +++FP EL+E +E+ + PRP+ +R N+LK +RRDLA
Sbjct: 187 VEVLKKDLCSQYGYNDYLMGKFMDLFPNGAELLEFLEANDNPRPVTIRANSLKVKRRDLA 246
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
LINRG+N+DP + W+KVGLVVYDSQVP+GATPEY+AG YM+Q +S LPVMALAPQ
Sbjct: 247 KNLINRGMNVDPAADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPG 306
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
+RV+DM +APGGKT++IAALMKN+G+++AN+ +R +++ NLHR+GV NT+VCN G
Sbjct: 307 DRVLDMCSAPGGKTSHIAALMKNSGVLFANDANFTRCRAIIGNLHRLGVNNTVVCNLGGE 366
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
E K+ N DR+LLDAPCSGTGVI KD+SVKTSK +D+Q+ +Q+QLIL+A+D +D
Sbjct: 367 EFSKIRP-NGFDRILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTMQRQLILSALDSLD 425
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
ANS +GGY+VYSTCS++V ENEAV+++ L++R +LVP GL G G+ RFR++RFHPSL
Sbjct: 426 ANSPNGGYLVYSTCSVLVEENEAVVNFLLERRHCELVPTGLSIGVDGYTRFRDYRFHPSL 485
Query: 360 EKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENS 419
T+R+YPHVHN+DGF+VAK+KK+SN+K + G +E++ ++ + +KK + +
Sbjct: 486 SMTKRYYPHVHNIDGFYVAKIKKLSNAKMSKQG-----VMEKEKEKAAQKSQNKKNKAEA 540
Query: 420 EQVLMKKATTKAKDLKKKTSGLAENG 445
E A+ + D ++K +G+ NG
Sbjct: 541 E------ASESSDDEEEKKNGVEVNG 560
>gi|196007796|ref|XP_002113764.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens]
gi|190584168|gb|EDV24238.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens]
Length = 389
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/362 (62%), Positives = 289/362 (79%), Gaps = 2/362 (0%)
Query: 24 KQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALV 83
+ +PPDL + +RIK+ + VL NFK L RK+Y+ L+ DL +YY YN++L+
Sbjct: 7 RLEPPDLQLVHQRIKDTIAVLGNFKRLRDPERKRKDYLDLLRHDLANYYNYNDYLMQKFT 66
Query: 84 EMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY 143
++F EL+E +E+ E RP+ +RTNTLK+RRRDLA LINRGVNLDP+ +WSKVGL+V+
Sbjct: 67 DLFDIKELIEFLEANEVERPVTIRTNTLKSRRRDLAQALINRGVNLDPIGEWSKVGLIVF 126
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT 203
DS VPIGATPEY+AG YMLQ ASS LPVMALA Q E+V+DM +APGGKTTYIAALMKNT
Sbjct: 127 DSPVPIGATPEYLAGHYMLQGASSMLPVMALAAQPNEKVLDMCSAPGGKTTYIAALMKNT 186
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G+I AN++ R K+LTAN+HR+GV NTIVC+ +G + PK++G DRVLLDAPCSGTG
Sbjct: 187 GMIVANDVNKERCKALTANIHRLGVVNTIVCSENGRQFPKIVG--GFDRVLLDAPCSGTG 244
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
VISKD SVK++K +DI +CS++QK+L+L+AID VDA S +GGYIVY TCSIMV E+E V
Sbjct: 245 VISKDASVKSNKVEKDILRCSHIQKELLLSAIDSVDARSSTGGYIVYCTCSIMVEEDEWV 304
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+DYALK+R VKLV GL+FGR+GF +F+E RFHP+L+ TRR+YPH HNMDGFFVAK KK+
Sbjct: 305 VDYALKRRSVKLVSTGLEFGREGFTKFKERRFHPTLKLTRRYYPHEHNMDGFFVAKFKKL 364
Query: 384 SN 385
SN
Sbjct: 365 SN 366
>gi|198460957|ref|XP_001361857.2| GA21153 [Drosophila pseudoobscura pseudoobscura]
gi|198137190|gb|EAL26436.2| GA21153 [Drosophila pseudoobscura pseudoobscura]
Length = 934
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/386 (59%), Positives = 299/386 (77%), Gaps = 6/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ+ + + D F+LPT+EE E++ L ++Q+RIK++ VLS+FK Q SR EY
Sbjct: 269 MQMTV-DHQDVFQLPTEEEEAEKEIT---LQDVQQRIKDVTLVLSDFKKYRQADRSRSEY 324
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL YY YN+FL+ L++MFP ELME +ES E RP+ +RTNTLK RRR LA
Sbjct: 325 IDRLRQDLCLYYSYNDFLMEKLMDMFPLSELMEYLESSEVARPLTIRTNTLKIRRRQLAG 384
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KW+K GLV+++SQVP+GATPEY+ G+YM+Q ASS LPVMALAPQE E
Sbjct: 385 ALINRGVNLDPLGKWTKEGLVIFNSQVPLGATPEYLGGYYMIQGASSMLPVMALAPQENE 444
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM +APGGK ++IAA MKN+G+++AN+ R+K++ AN HR+GV N++V DG +
Sbjct: 445 RILDMCSAPGGKGSHIAAAMKNSGVLFANDSNRDRIKAVVANFHRLGVVNSVVSCEDGTK 504
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
K+ + DR+LLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID VDA
Sbjct: 505 FRKI--MTGFDRILLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDA 562
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GG IVYSTCS++ ENE VIDYALKKR+VKLVP GLDFG +GF +FR+HRFHPSL
Sbjct: 563 KSSTGGIIVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHRFHPSLN 622
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
T+R+YPH HNMDGF+VAKLKK SN+
Sbjct: 623 LTKRYYPHTHNMDGFYVAKLKKFSNT 648
>gi|50310429|ref|XP_455234.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644370|emb|CAG97942.1| KLLA0F03399p [Kluyveromyces lactis]
Length = 619
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/375 (60%), Positives = 287/375 (76%), Gaps = 3/375 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP E+ E+Q PPDL ++ R+ EIV+VL +FK L +G SR EYV +L D+ Y+G
Sbjct: 178 LPNAEQEAIEEQGPPDLTAIRTRMIEIVKVLEDFKTLGAEGKSRTEYVDRLLKDICHYFG 237
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RP+ +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 238 YTPFLAEKLFNLFSPAEAMEFFEANEIARPVTIRTNTLKTRRRDLAQTLVNRGVNLQPIG 297
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL PQE ER++DMAAAPGGKT
Sbjct: 298 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPQENERILDMAAAPGGKT 357
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 358 TYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 415
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD+NSK+GG IVYSTC
Sbjct: 416 LLDAPCSGTGVIGKDQSVKVSRTEKDFMQIPHLQKQLLLSAIDSVDSNSKTGGVIVYSTC 475
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV L G++GF +R FHPS++ TRR+YPH +N+
Sbjct: 476 SVAVDENEAVVDYALRKRPNVKLVETKLAIGKEGFTSYRGKTFHPSVKMTRRYYPHTYNV 535
Query: 373 DGFFVAKLKKMSNSK 387
DGFFVAK +K SK
Sbjct: 536 DGFFVAKFQKTGPSK 550
>gi|241958522|ref|XP_002421980.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36]
gi|223645325|emb|CAX39981.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36]
Length = 620
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/374 (60%), Positives = 290/374 (77%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT EE E + P D+ ++ R+ E+V+VL NFK+L+++GTSR +Y +L D+ Y+G
Sbjct: 187 LPTAEEEAEMSKGPQDVTMVRTRMLEVVKVLENFKELAEEGTSRTDYTNRLLKDICEYFG 246
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+N+GVNL P+
Sbjct: 247 YSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVNLQPIG 306
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKT
Sbjct: 307 SWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKT 366
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DRV
Sbjct: 367 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRV 424
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDA+S +GG IVYSTC
Sbjct: 425 LLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVYSTC 484
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
SI V ENEAV+DYAL+KR +VKLV GL G++GF +R F+P + TRR+YPH +N+
Sbjct: 485 SIAVDENEAVVDYALRKRPNVKLVDTGLTIGKEGFTSYRGKHFNPKISLTRRYYPHTYNV 544
Query: 373 DGFFVAKLKKMSNS 386
DGF+VAK KK++ S
Sbjct: 545 DGFYVAKFKKIAPS 558
>gi|195170348|ref|XP_002025975.1| GL10113 [Drosophila persimilis]
gi|194110839|gb|EDW32882.1| GL10113 [Drosophila persimilis]
Length = 934
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/386 (59%), Positives = 299/386 (77%), Gaps = 6/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ+ + + D F+LPT+EE E++ L ++Q+RIK++ VLS+FK Q SR EY
Sbjct: 269 MQMTV-DHQDVFQLPTEEEEAEKEIT---LQDVQQRIKDVTLVLSDFKKYRQADRSRSEY 324
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL YY YN+FL+ L++MFP ELME +ES E RP+ +RTNTLK RRR LA
Sbjct: 325 IDRLRQDLCLYYSYNDFLMEKLMDMFPLSELMEYLESSEVARPLTIRTNTLKIRRRQLAG 384
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KW+K GLV+++SQVP+GATPEY+ G+YM+Q ASS LPVMALAPQE E
Sbjct: 385 ALINRGVNLDPLGKWTKEGLVIFNSQVPLGATPEYLGGYYMIQGASSMLPVMALAPQENE 444
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM +APGGK ++IAA MKN+G+++AN+ R+K++ AN HR+GV N++V DG +
Sbjct: 445 RILDMCSAPGGKGSHIAAAMKNSGVLFANDSNRDRIKAVVANFHRLGVVNSVVSCEDGTK 504
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
K+ + DR+LLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID VDA
Sbjct: 505 FRKI--MTGFDRILLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDA 562
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GG IVYSTCS++ ENE VIDYALKKR+VKLVP GLDFG +GF +FR+HRFHPSL
Sbjct: 563 KSSTGGIIVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHRFHPSLN 622
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
T+R+YPH HNMDGF+VAKLKK SN+
Sbjct: 623 LTKRYYPHTHNMDGFYVAKLKKFSNT 648
>gi|448525808|ref|XP_003869206.1| Nop2 protein [Candida orthopsilosis Co 90-125]
gi|380353559|emb|CCG23070.1| Nop2 protein [Candida orthopsilosis]
Length = 626
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/374 (60%), Positives = 292/374 (78%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+ E EE Q P D+ ++ R+ EIV+VL NFK L+++G SR +Y+ +L D+ Y+G
Sbjct: 193 LPTEAEEEEMSQGPQDVTMVRTRMLEIVKVLDNFKALAEEGKSRADYISRLIKDICEYFG 252
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E +E E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 253 YSEFLADKLFNLFSPSEAIEFFEANETARPITIRTNTLKTRRRDLAQSLVNRGVNLQPIG 312
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL PQE ER++DMAAAPGGKT
Sbjct: 313 SWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVIALDPQENERILDMAAAPGGKT 372
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E P+V+G DR+
Sbjct: 373 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPRVIG--GFDRI 430
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDANS +GG IVYSTC
Sbjct: 431 LLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTGGVIVYSTC 490
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV GL G++GF +R F+P L TRR+YPH++N+
Sbjct: 491 SVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGKHFNPKLSLTRRYYPHIYNV 550
Query: 373 DGFFVAKLKKMSNS 386
DGF+VAK KK+++S
Sbjct: 551 DGFYVAKFKKIASS 564
>gi|301119835|ref|XP_002907645.1| ribosomal RNA methyltransferase nop2-like protein [Phytophthora
infestans T30-4]
gi|262106157|gb|EEY64209.1| ribosomal RNA methyltransferase nop2-like protein [Phytophthora
infestans T30-4]
Length = 645
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/389 (60%), Positives = 299/389 (76%), Gaps = 6/389 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPN---LQRRIKEIVRVLSNFKDLSQKGTSR 57
M+LNI ++ + LPT+EE+ EE + D+ + + +RIK++V VLS+F + G SR
Sbjct: 134 MRLNI-ANNEPYHLPTEEELAEEGEGDDDMSDPAEVYQRIKDVVEVLSHFSARREPGRSR 192
Query: 58 KEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRD 117
+YV+ L DL Y+GYN LI ++MF P E +E +E+ E+PRP+ +RTNTLK RRRD
Sbjct: 193 VDYVESLAKDLAGYFGYNRELIDMFLKMFSPAECVEFVEANEQPRPLVIRTNTLKARRRD 252
Query: 118 LADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQ 177
LA LI RGVNLDPL+KWSKVGL +YDS VPIGATPEY+AG YMLQSASS VMALAPQ
Sbjct: 253 LAQALIQRGVNLDPLAKWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSICAVMALAPQ 312
Query: 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237
ERV+DMA APGGKTTYIA LMKNTG + AN++K RLK+ ANLHR+GV NT V YD
Sbjct: 313 MNERVLDMACAPGGKTTYIAQLMKNTGTVIANDLKKQRLKATVANLHRLGVKNTSVSCYD 372
Query: 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
G ++P + DRVLLDAPC+G GVI++D S+KT K +D+Q+ ++LQK+L+LAAID
Sbjct: 373 GRKVPSL--FKGFDRVLLDAPCTGMGVIARDPSIKTQKGEKDVQRLAHLQKELLLAAIDA 430
Query: 298 VDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
VDA SK+GGYI+YSTCS+MV ENE+V+DYAL+KR VKLV GLD G+ GF R+++ RFHP
Sbjct: 431 VDAKSKTGGYILYSTCSVMVDENESVVDYALRKRCVKLVDTGLDHGKPGFTRYQQQRFHP 490
Query: 358 SLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
S++ TRRFYPHVHNMDGF+VAK KK +N+
Sbjct: 491 SVQLTRRFYPHVHNMDGFYVAKFKKYANT 519
>gi|193638967|ref|XP_001943714.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Acyrthosiphon pisum]
Length = 657
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 222/385 (57%), Positives = 292/385 (75%), Gaps = 7/385 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ+N+ + D F P ++I+E +P +++RIK+I+ VLSNF ++ SR+EY
Sbjct: 226 MQINVASQ-DVFVFPASDKIDEHIP----IPEVEQRIKDILLVLSNFNKFREENRSRQEY 280
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L DL +Y+ YN FL+ ++ +FP +LM +E+ E PRP+ +RTN+LKTRRRDLA
Sbjct: 281 TELLLKDLCTYFSYNTFLMEKMMHLFPLEDLMSFLEASETPRPVTIRTNSLKTRRRDLAQ 340
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ WSKVGLVVY+S VPIGATPEY+AG YMLQ+ASS LPVMALAPQE E
Sbjct: 341 ALINRGVNLDPIGNWSKVGLVVYNSTVPIGATPEYLAGHYMLQAASSMLPVMALAPQENE 400
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
++DM +APGGK ++IAA+MKNTG++ AN++ +R K++ N HRMG+ N+++ YDG
Sbjct: 401 LILDMCSAPGGKASHIAAIMKNTGVLIANDVNKNRAKAVIGNFHRMGIANSVISTYDGRH 460
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+P++ DRVLLDAPC+GTGVISKD VK SK D+Q+C LQ++L+LAAID ++
Sbjct: 461 IPQL--FKNFDRVLLDAPCTGTGVISKDSGVKMSKDETDLQRCFTLQRELLLAAIDSLNF 518
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GGY+VYSTCS++V ENE VIDYALKKRDVKLV GL FG +GF R+HRFHP+++
Sbjct: 519 KSSTGGYLVYSTCSVLVEENECVIDYALKKRDVKLVDTGLSFGTEGFTNLRQHRFHPTMK 578
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN 385
T+RFYPH HNMDGFFVAKLKK SN
Sbjct: 579 LTKRFYPHTHNMDGFFVAKLKKFSN 603
>gi|195026871|ref|XP_001986354.1| GH21314 [Drosophila grimshawi]
gi|193902354|gb|EDW01221.1| GH21314 [Drosophila grimshawi]
Length = 843
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/438 (53%), Positives = 317/438 (72%), Gaps = 14/438 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ+++ ++S+ F LP E E+ + L ++Q+RIK+I +VLS+F ++G SR EY
Sbjct: 273 MQMSV-DQSEVFHLP---ESGEDADKELSLQDVQQRIKDITQVLSDFGKFREEGRSRSEY 328
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QL+ DL YY YNEFL+ L+++F +L+E +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 329 VDQLRQDLCLYYSYNEFLMSKLMDIFKLSDLLEYLEASEIARPLTIRTNSLKTRRRDLAG 388
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KW+ VGLV+++S VP+GATPEY+AG YM+Q ASS LPV+ALAPQEKE
Sbjct: 389 ALINRGVNLDPLGKWTNVGLVIFNSTVPLGATPEYLAGHYMIQGASSMLPVIALAPQEKE 448
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM +APGGK ++IAA+MKNTG+++AN+ R+K++ AN HR+G+ N +V D +
Sbjct: 449 RVLDMCSAPGGKGSHIAAVMKNTGVLFANDANRDRIKAVVANFHRLGIVNAVVSCEDATK 508
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ + DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID VDA
Sbjct: 509 FRNI--MTGFDRVLLDAPCTGTGVVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDA 566
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GGYIVYSTCS++ ENE VIDYALKKR+VKLVP G+DFG GF +FR+HR+HPSL
Sbjct: 567 KSSTGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVPLGIDFGEPGFTKFRQHRYHPSLN 626
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS------KKTSAGPQPSETVEQQTPESNVSNGDKK 414
++RFYPH +NMDGF+VAKLKK SN+ ++ + Q E + PE+ + K
Sbjct: 627 LSKRFYPHTNNMDGFYVAKLKKFSNTIPITKEQQEADEKQLDEAIAADQPEAKTTTD--K 684
Query: 415 TEENSEQVLMKKATTKAK 432
E + AT KAK
Sbjct: 685 DAGGEEAIATDAATRKAK 702
>gi|348690059|gb|EGZ29873.1| hypothetical protein PHYSODRAFT_476935 [Phytophthora sojae]
Length = 481
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/389 (60%), Positives = 299/389 (76%), Gaps = 6/389 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPN---LQRRIKEIVRVLSNFKDLSQKGTSR 57
M+LNI ++ + LPT+EE+ EE + D+ + + +RIK++V VLS+F + G SR
Sbjct: 1 MRLNI-ANNEPYHLPTEEELAEEGEGDDDMTDPAEVYQRIKDVVEVLSHFSARREPGRSR 59
Query: 58 KEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRD 117
+YV+ L DL Y+GYN LI ++MF P E +E +E+ E+PRP+ +RTNTLK RRRD
Sbjct: 60 VDYVESLAKDLAGYFGYNRELIDMFLKMFSPAECVEFVEANEQPRPLVIRTNTLKARRRD 119
Query: 118 LADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQ 177
LA LI RGVNLDPL+KWSKVGL +YDS VPIGATPEY+AG YMLQSASS VMALAPQ
Sbjct: 120 LAQALIQRGVNLDPLAKWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSICAVMALAPQ 179
Query: 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237
ERV+DMA APGGKTTYIA LMKNTG I AN++K RLK+ ANLHR+GV NT V YD
Sbjct: 180 MNERVLDMACAPGGKTTYIAQLMKNTGTIIANDLKKQRLKATVANLHRLGVKNTSVSCYD 239
Query: 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
G ++P + DRVLLDAPC+G GVI++D S+KT K +D+Q+ ++LQK+L+LAAID
Sbjct: 240 GRKVPSL--FKGFDRVLLDAPCTGMGVIARDPSIKTQKGEKDVQRLAHLQKELLLAAIDA 297
Query: 298 VDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
VDA SK+GGYI+YSTCS+MV ENE+V+DYAL+KR VKLV GLD G+ GF R+++ RFHP
Sbjct: 298 VDAKSKTGGYILYSTCSVMVDENESVVDYALRKRCVKLVDTGLDHGKPGFTRYQQQRFHP 357
Query: 358 SLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
S++ TRRFYPHVHNMDGF+VAK KK +N+
Sbjct: 358 SVQLTRRFYPHVHNMDGFYVAKFKKYANT 386
>gi|242010929|ref|XP_002426210.1| Proliferating-cell nucleolar antigen p120, putative [Pediculus
humanus corporis]
gi|212510261|gb|EEB13472.1| Proliferating-cell nucleolar antigen p120, putative [Pediculus
humanus corporis]
Length = 730
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/388 (60%), Positives = 305/388 (78%), Gaps = 7/388 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLNI +D F P++EE+E + L ++Q+RIK+++ VLS+FK + R++Y
Sbjct: 154 IQLNI-GHNDIFTFPSEEEMENVQS----LSDVQQRIKDVLIVLSDFKKFRDENRKRQDY 208
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ LK DL SYY YNEFL+ + +F EL+E +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 209 IDLLKRDLCSYYSYNEFLMEKFMNLFELNELLEFLEASEVHRPVTIRTNSLKTRRRDLAQ 268
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KW+KVGLV++ SQVPIGATPEY+AG Y++Q ASS LPVMALAP+E E
Sbjct: 269 ALINRGVNLDPLGKWTKVGLVIFSSQVPIGATPEYLAGHYLIQGASSLLPVMALAPRENE 328
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM +APGGK ++IAA+MKNTG++ AN++ A R +++ N HR+GV+N+I+C+YDG +
Sbjct: 329 RILDMCSAPGGKGSHIAAVMKNTGVLVANDVNADRNRAVVGNFHRLGVSNSIICSYDGRK 388
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LP V L DRVLLDAPC+GTGV++KD +VKTSK +DIQ+C LQK+LILAAID ++
Sbjct: 389 LPTV--LKGFDRVLLDAPCTGTGVVAKDPTVKTSKDEKDIQRCINLQKELILAAIDCLNP 446
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NS SGGY+VYSTCS++V ENE V++YALKKRDVKLVP GL+FG QGFV FR +RFH ++
Sbjct: 447 NSASGGYLVYSTCSVLVEENECVVEYALKKRDVKLVPTGLEFGEQGFVNFRGNRFHSTMN 506
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKK 388
TRR+YPH HNMDGFFVAKLKK SN+ K
Sbjct: 507 LTRRYYPHSHNMDGFFVAKLKKCSNAIK 534
>gi|391342347|ref|XP_003745482.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Metaseiulus occidentalis]
Length = 577
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 223/384 (58%), Positives = 296/384 (77%), Gaps = 3/384 (0%)
Query: 9 SDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDL 68
SD FRLP++ E+E EK+ P + + +RIK+I+ VL++F + R++YV+QL LDL
Sbjct: 192 SDYFRLPSESELENEKEVPLSVQAVHQRIKDILHVLADFSKRKEASRCRQDYVRQLILDL 251
Query: 69 GSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVN 128
SYY YN FL+ L +F P EL E +E+ + PRP+ +RTNTLKTRRR+LA L+NRGVN
Sbjct: 252 CSYYSYNAFLMERLFYLFSPTELSEYLEANQVPRPLTIRTNTLKTRRRELAQALLNRGVN 311
Query: 129 LDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAA 188
LDP+ +WSKVGLV+Y+SQVPIGATPEY++G YMLQ A+S LPVMAL P+E E+++D+ AA
Sbjct: 312 LDPIGEWSKVGLVIYNSQVPIGATPEYLSGHYMLQGAASMLPVMALDPKENEKILDLCAA 371
Query: 189 PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248
PGGKT++I ALMKNTG+++AN+ + R K++ ANLHR+GVTN +V DG + KV +
Sbjct: 372 PGGKTSHIGALMKNTGVLFANDSQPDRCKAVIANLHRLGVTNAVVSTMDGRKFTKV--MT 429
Query: 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308
DRVL+DAPCSG+GV+SKDE VKTSK +DI +CS+LQK+L+LAAID VD+NS S G++
Sbjct: 430 GFDRVLVDAPCSGSGVVSKDEHVKTSKDEKDILRCSHLQKELLLAAIDCVDSNS-SAGFV 488
Query: 309 VYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
VYSTCS++ ENE VIDYALK R V++V L FGR+G R+REHRF+P++ RRFYPH
Sbjct: 489 VYSTCSVLPEENECVIDYALKHRHVEIVDSSLKFGREGLPRYREHRFNPNMNLARRFYPH 548
Query: 369 VHNMDGFFVAKLKKMSNSKKTSAG 392
HNM+GFFV KLKK++N + G
Sbjct: 549 THNMEGFFVCKLKKLANGNANNDG 572
>gi|255721331|ref|XP_002545600.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404]
gi|240136089|gb|EER35642.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404]
Length = 623
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/374 (60%), Positives = 289/374 (77%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT EE E +Q P D+ ++ R+ EIV+VL NFK+L+++G SR +Y +L D+ Y+G
Sbjct: 190 LPTAEEEELMEQGPQDVTMVRTRMLEIVKVLENFKELAEEGKSRTDYTNRLLKDICEYFG 249
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E ME E+ E RP+ +RTNTLKTRRRDLA L+N+GVNL P+
Sbjct: 250 YSEFLAEKLFNLFSPAEAMEFFEANEIARPVTIRTNTLKTRRRDLAQALVNKGVNLQPIG 309
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKT
Sbjct: 310 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALEPQENERILDMAAAPGGKT 369
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DRV
Sbjct: 370 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRV 427
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KD SVK S++ +D + +LQKQL+L+AID VDANS +GG IVYSTC
Sbjct: 428 LLDAPCSGTGVIAKDASVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSPTGGVIVYSTC 487
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
SI V ENEAV+DYAL+KR +VKLV GL G++GF +R F+P + TRR+YPH +N+
Sbjct: 488 SIAVDENEAVVDYALRKRPNVKLVDTGLTIGKEGFTSYRGKHFNPKIALTRRYYPHTYNV 547
Query: 373 DGFFVAKLKKMSNS 386
DGF+VAK KK++ S
Sbjct: 548 DGFYVAKFKKIAPS 561
>gi|403337775|gb|EJY68110.1| Ribosomal RNA methyltransferase nop2-like protein [Oxytricha
trifallax]
Length = 715
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/377 (60%), Positives = 290/377 (76%), Gaps = 9/377 (2%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DL +Q R+KE V+VL+NFKDL SR +Y+++++ D+ S + YN L+ L+++F P
Sbjct: 121 DLGIIQMRLKENVKVLTNFKDLRDPNKSRLDYLEEVRNDICSAFDYNPDLVELLLDLFHP 180
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E +E IE+ E RP+ +RTNTLKT+R+DLA LI RGVNLDP+++WSKVGL +YDS VP
Sbjct: 181 SECLEFIEANENQRPMTIRTNTLKTKRKDLAKTLIQRGVNLDPVAEWSKVGLKIYDSAVP 240
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+AG Y+LQSASSFLPV+ALAPQ E+++DMAAAPGGKTTYIA LMKNTG++ A
Sbjct: 241 IGATPEYLAGHYILQSASSFLPVIALAPQPNEKILDMAAAPGGKTTYIAQLMKNTGVLVA 300
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N++K RLKSL ANLHR+GVTNT+V N+DG ++P + DR LLDAPCSG GVI++D
Sbjct: 301 NDLKKERLKSLNANLHRLGVTNTVVINHDGRKIPSL--YTKFDRCLLDAPCSGLGVIARD 358
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
S+K K+ ED++K S+LQK+LI AAID+VDA+SK+GGYIVYSTCSI V ENE V+DYAL
Sbjct: 359 PSIKVQKTREDVKKLSHLQKELIKAAIDIVDAHSKTGGYIVYSTCSISVEENEWVVDYAL 418
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK 388
K R VKLV G++ G GF + +E RFHPSL TRR YPH HNMDGFFVAK KK +N +K
Sbjct: 419 KSRYVKLVETGVEIGEPGFTKHKEKRFHPSLNLTRRIYPHTHNMDGFFVAKFKKFANGEK 478
Query: 389 TSAGPQPSETVEQQTPE 405
EQ+TPE
Sbjct: 479 KQED-------EQKTPE 488
>gi|255718325|ref|XP_002555443.1| KLTH0G09460p [Lachancea thermotolerans]
gi|238936827|emb|CAR25006.1| KLTH0G09460p [Lachancea thermotolerans CBS 6340]
Length = 637
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/375 (60%), Positives = 295/375 (78%), Gaps = 3/375 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+EE E + +P DL ++ R+ EIV+VL +FK+L +G SR EYV +L D+ Y+G
Sbjct: 192 LPTEEEEEALRDRPTDLNAVRTRMIEIVKVLEDFKNLGAEGRSRSEYVDRLLKDICEYFG 251
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y++FL L +F P E +E E+ E RP+ +RTN+LKTRRRDLA L+NRGVNL P+
Sbjct: 252 YSQFLAEKLFNLFSPTEALEFFEANEVSRPVTIRTNSLKTRRRDLAQTLVNRGVNLKPIG 311
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 312 PWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVVALDPHENERILDMAAAPGGKT 371
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 372 TYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 429
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KD+SVK S++ +D + +LQKQL+L+AID VDANSK+GG IVYSTC
Sbjct: 430 LLDAPCSGTGVIAKDQSVKVSRTDKDFMQIPHLQKQLLLSAIDSVDANSKTGGVIVYSTC 489
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV GL G++ FV +R +FHPS++ RR+YPHV+N+
Sbjct: 490 SVAVEENEAVVDYALRKRPNVKLVDAGLAIGKEAFVSYRGKKFHPSVKLARRYYPHVYNV 549
Query: 373 DGFFVAKLKKMSNSK 387
DGFFVAK +K++ SK
Sbjct: 550 DGFFVAKFQKIAPSK 564
>gi|448084192|ref|XP_004195543.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
gi|359376965|emb|CCE85348.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
Length = 615
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/388 (60%), Positives = 296/388 (76%), Gaps = 6/388 (1%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DL +++ R+ EIV+VL NFK+L+++G SR EYV +L D+ Y+GY+EFL L E+F P
Sbjct: 197 DLTSIRTRMIEIVKVLENFKELAEEGISRSEYVNRLIKDITIYFGYSEFLATLLFELFSP 256
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E ME E+ E RPI +RTNTLK RRRDLA L+NRGVNL P+ W+KVGL V+DSQVP
Sbjct: 257 GEAMEFFEANEIARPITIRTNTLKARRRDLAQALVNRGVNLQPIGPWTKVGLQVFDSQVP 316
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+AG Y+LQ+ASSFLPVMAL PQE ERV+DMAAAPGGKTTYI+ALMKNTG ++A
Sbjct: 317 IGATPEYLAGHYILQAASSFLPVMALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFA 376
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N+ SR KSL AN+HR+G NTIVCNYD E PKV+G DR+LLDAPCSGTGVI+KD
Sbjct: 377 NDANKSRTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRILLDAPCSGTGVIAKD 434
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
ESVK S++ +D + +LQKQLIL+AID VDA+S +GG IVYSTCS+ V ENEAV+DYAL
Sbjct: 435 ESVKISRTEKDFVQIPHLQKQLILSAIDSVDAHSPTGGIIVYSTCSVTVAENEAVVDYAL 494
Query: 329 KKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
+KR +VKLV L G++GF +R F+PS+ TRR+YPH +N+DGF+VAK KK+++S
Sbjct: 495 RKRPNVKLVSTDLQIGKEGFTSYRGKHFNPSISLTRRYYPHTYNVDGFYVAKFKKIASSP 554
Query: 388 K--TSAGPQPSE-TVEQQTPESNVSNGD 412
+ AG + E + ++ E + N D
Sbjct: 555 HDVSKAGAKEKEASAREEAIEEGIINDD 582
>gi|410083445|ref|XP_003959300.1| hypothetical protein KAFR_0J00970 [Kazachstania africana CBS 2517]
gi|372465891|emb|CCF60165.1| hypothetical protein KAFR_0J00970 [Kazachstania africana CBS 2517]
Length = 610
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/374 (61%), Positives = 289/374 (77%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP+KEE E Q P DL ++ R+ EIV+VL +FK L + SR EYV +L D+ YYG
Sbjct: 176 LPSKEEEELMAQGPADLTAVRTRMIEIVKVLEDFKSLGAENRSRSEYVDRLLKDICEYYG 235
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+ FL L ++F P E +E E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 236 YSPFLAEKLFDLFSPAEAVEFFEANEVARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 295
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL PQE ER++DMA+APGGKT
Sbjct: 296 NWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVIALDPQENERILDMASAPGGKT 355
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 356 TYISALMKNTGCVFANDANKNRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 413
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VDANSKSGG IVYSTC
Sbjct: 414 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSKSGGVIVYSTC 473
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +VKLV L G++GF FR +FHPSL+ TRR+YPH +N+
Sbjct: 474 SVAVEEDEAVVDYALRKRPNVKLVETNLAIGKEGFTSFRGKKFHPSLKLTRRYYPHTYNV 533
Query: 373 DGFFVAKLKKMSNS 386
DGF+VAK +K+ S
Sbjct: 534 DGFYVAKFQKVRPS 547
>gi|401623874|gb|EJS41955.1| nop2p [Saccharomyces arboricola H-6]
Length = 618
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/374 (60%), Positives = 286/374 (76%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEIMAQEAPNLTSTRTRMIEIVKVLENFKTLGAEGRSRAEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +VKLV GL G++GF +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKMSNS 386
DGFFVAK +K+ S
Sbjct: 539 DGFFVAKFQKIGPS 552
>gi|444320603|ref|XP_004180958.1| hypothetical protein TBLA_0E03850 [Tetrapisispora blattae CBS 6284]
gi|387514001|emb|CCH61439.1| hypothetical protein TBLA_0E03850 [Tetrapisispora blattae CBS 6284]
Length = 632
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/375 (60%), Positives = 291/375 (77%), Gaps = 3/375 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP++EE++ QP DL +++ R+ EIV+VL +FK+L + SR EY ++L D+ Y+G
Sbjct: 195 LPSEEELQVNAGQPSDLTSIRTRMLEIVKVLEDFKNLGAENRSRSEYTERLLQDICEYFG 254
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E +E E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 255 YTPFLAEKLFNLFSPSEAIEFFEANEVSRPITIRTNTLKTRRRDLAQALVNRGVNLQPIG 314
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL PQE ERV+DMA+APGGKT
Sbjct: 315 AWTKVGLQIFDSQVPIGATPEYLAGNYILQAASSFLPVIALDPQENERVLDMASAPGGKT 374
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG I+AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 375 TYISALMKNTGCIFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 432
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQLIL+AID +D+NSK+GG +VYSTC
Sbjct: 433 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLILSAIDSLDSNSKNGGVLVYSTC 492
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +VKLV GL G++GF +R +FHPS++ TRR+YPH +N+
Sbjct: 493 SVAVEEDEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGKKFHPSVKLTRRYYPHTYNV 552
Query: 373 DGFFVAKLKKMSNSK 387
DGFFVAK +K SK
Sbjct: 553 DGFFVAKFQKTGPSK 567
>gi|365985658|ref|XP_003669661.1| hypothetical protein NDAI_0D01050 [Naumovozyma dairenensis CBS 421]
gi|343768430|emb|CCD24418.1| hypothetical protein NDAI_0D01050 [Naumovozyma dairenensis CBS 421]
Length = 625
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/385 (59%), Positives = 289/385 (75%), Gaps = 11/385 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E QQ PDL ++ R+ EIV+VL +FK+L+ +G SR EY +L D+ Y+G
Sbjct: 188 LPTEEQELELAQQQPDLTTVRTRMIEIVKVLEDFKNLAAEGRSRTEYTDRLLKDICEYFG 247
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 248 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNRGVNLQPIG 307
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 308 SWTKVGLQIFDSQVPIGATPEYLAGNYILQAASSFLPVIALDPHENERILDMAAAPGGKT 367
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 368 TYISALMKNTGTVFANDANKNRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 425
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 426 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGIIVYSTC 485
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +VKLV GL G+ GF FR FHPS++ T+R+YPH +N+
Sbjct: 486 SVAVEEDEAVVDYALRKRPNVKLVDTGLAIGKDGFTSFRGKNFHPSIKLTKRYYPHTYNV 545
Query: 373 DGFFVAKLKKMSNSKKTSAGPQPSE 397
DGF+VAK +K+ GP P +
Sbjct: 546 DGFYVAKFQKI--------GPSPHD 562
>gi|354545845|emb|CCE42574.1| hypothetical protein CPAR2_202170 [Candida parapsilosis]
Length = 629
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/374 (60%), Positives = 290/374 (77%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT E EE Q P D+ ++ R+ EIV+VL NFK L+++G SR +YV +L D+ Y+G
Sbjct: 196 LPTDAEEEEMAQGPQDVTMVRTRMLEIVKVLDNFKTLAEEGKSRADYVSRLIKDICEYFG 255
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+E L L +F P E +E E+ E RPI +RTNTLKT+RRDLA L+NRGVNL P+
Sbjct: 256 YSELLADKLFNLFSPSEAIEFFEANETARPITIRTNTLKTKRRDLAQSLVNRGVNLQPIG 315
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P+E ER++DMAAAPGGKT
Sbjct: 316 SWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVIALDPKENERILDMAAAPGGKT 375
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DR+
Sbjct: 376 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRI 433
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDANS +GG IVYSTC
Sbjct: 434 LLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTGGIIVYSTC 493
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV GL G++GF +R F+P L TRR+YPH++N+
Sbjct: 494 SVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGRHFNPKLNLTRRYYPHIYNV 553
Query: 373 DGFFVAKLKKMSNS 386
DGF+VAK KK+++S
Sbjct: 554 DGFYVAKFKKIASS 567
>gi|45187619|ref|NP_983842.1| ADL254Wp [Ashbya gossypii ATCC 10895]
gi|44982357|gb|AAS51666.1| ADL254Wp [Ashbya gossypii ATCC 10895]
Length = 603
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/375 (59%), Positives = 286/375 (76%), Gaps = 3/375 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP E+ E E Q PPDL ++ R+ EIV+VL +FK ++ +G SR EY+ +L D+ Y+G
Sbjct: 168 LPNSEQEELEAQGPPDLTAIRTRMLEIVKVLEDFKHMAAEGRSRSEYIDRLLKDICQYFG 227
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RP+ +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 228 YTPFLAEKLFNLFSPAEAMEFFEANEVARPVTIRTNTLKTRRRDLAQNLVNRGVNLQPIG 287
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVP+GATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 288 SWTKVGLQIFDSQVPVGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 347
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 348 TYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 405
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK +++ +D + +LQKQLIL+AID VD+NSK GG IVYSTC
Sbjct: 406 LLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQLILSAIDSVDSNSKHGGVIVYSTC 465
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV GL G++GF +R +FH ++ TRR+YPH +N+
Sbjct: 466 SVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGKKFHHTINLTRRYYPHTYNV 525
Query: 373 DGFFVAKLKKMSNSK 387
DGFFVAK +K SK
Sbjct: 526 DGFFVAKFQKTGPSK 540
>gi|325190500|emb|CCA24999.1| ribosomal RNA methyltransferase nop2like protein put [Albugo
laibachii Nc14]
Length = 597
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 253/481 (52%), Positives = 330/481 (68%), Gaps = 29/481 (6%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLNI ++++ + L + E ++ + +RIK+IV+VL FK+ + G SR +Y
Sbjct: 117 IQLNI-QKNEPYHLENENENSQQDETMMASSERYQRIKDIVQVLLQFKERREPGKSRVQY 175
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
++ L D+ Y+GYN L+ +++F P E +E IE+ E+ RP+ +RTNTLK RRRDLA
Sbjct: 176 LETLTTDISEYFGYNRELVEMFLKIFSPAECLEFIEANEQTRPLVIRTNTLKARRRDLAQ 235
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI RGVNLDPL+KWSKVGL +YDS VPIGATPEY+AG YMLQSASS V+ALAPQ E
Sbjct: 236 HLIQRGVNLDPLAKWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSMCAVVALAPQLNE 295
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMA APGGKTTYIA LMKNTG + AN++K RLK+ ANLHR+GV N VC YDG +
Sbjct: 296 RVLDMACAPGGKTTYIAQLMKNTGTVIANDLKKQRLKATVANLHRLGVRNCSVCCYDGRQ 355
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LP + DRVLLDAPC+G GVIS+D S+KT K+ +D+++ ++LQK+L+LAAID VDA
Sbjct: 356 LPAL--FKGFDRVLLDAPCTGLGVISRDPSIKTQKTEKDVERLAHLQKELLLAAIDAVDA 413
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+ GYIVYSTCS+MV ENEAVIDYAL KR VKLV GLD G+ GF R++ RFHPSL
Sbjct: 414 RSKTAGYIVYSTCSVMVEENEAVIDYALGKRCVKLVDPGLDHGKSGFTRYQHQRFHPSLS 473
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSN---SKKTSAGPQPSETV---------EQQTPESNV 408
++RFYPHVHNMDGFFVAKLKK +N S++ S + E+V + ++ ++ V
Sbjct: 474 MSKRFYPHVHNMDGFFVAKLKKYANVLPSEQQSTQEKEEESVPMSKKEKRAQAKSAKAAV 533
Query: 409 SNGDKKT-EENSEQV------------LMKKATTKAKDLKKKTSGLAENGNVESPSNEKR 455
+ D K EN ++V MK+ +K K +KTS G VE P +KR
Sbjct: 534 AQVDGKVIAENEDEVDEQSKAIAPPHETMKRLPSKKKSAHQKTSRKRVRG-VEKPIVKKR 592
Query: 456 R 456
R
Sbjct: 593 R 593
>gi|260944772|ref|XP_002616684.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
gi|238850333|gb|EEQ39797.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
Length = 599
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/418 (56%), Positives = 310/418 (74%), Gaps = 7/418 (1%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+EE + P D+ +++ R+ EIV+VL NFK+L+++G SR +Y +L D+ Y+G
Sbjct: 169 LPTEEEEAMMAEHPTDVTSVRTRMIEIVKVLENFKELAEEGKSRADYTSRLLKDICEYFG 228
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 229 YSEFLAEKLFNLFSPSEAMEFFEANEVARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 288
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ERV+DMAAAPGGKT
Sbjct: 289 AWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERVLDMAAAPGGKT 348
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+ R+G NTIVC+YD E PKV+G DRV
Sbjct: 349 TYISALMKNTGCVFANDANKARTKSLIANIQRLGCKNTIVCHYDAREFPKVIG--GFDRV 406
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDANS +GG IVYSTC
Sbjct: 407 LLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSPTGGVIVYSTC 466
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
SI V ENEAV+DYAL+KR +VKLV GL G++GF +R RF+P + TRR+YPH +N+
Sbjct: 467 SIAVDENEAVVDYALRKRPNVKLVETGLQIGKEGFTSYRGKRFNPKISMTRRYYPHTYNV 526
Query: 373 DGFFVAKLKKMSNSKK--TSAGPQPSETVEQQTPESN--VSNGDKKTEENSEQVLMKK 426
DGF+VAK KK++ S T AG + E++ + E + + + EE+ ++ ++K
Sbjct: 527 DGFYVAKFKKIAPSPHDITKAGAKEKESLARSEAEEEGIIHDDFAEFEEDEDKPFIRK 584
>gi|344304004|gb|EGW34253.1| hypothetical protein SPAPADRAFT_59678, partial [Spathaspora
passalidarum NRRL Y-27907]
Length = 581
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/393 (59%), Positives = 297/393 (75%), Gaps = 6/393 (1%)
Query: 14 LPT-KEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYY 72
LPT +EE E K P D+ ++ R+ EIV+VL NF D++++G SR +YV +L D+ Y+
Sbjct: 163 LPTAEEEAEIAKGGPQDVTAVRTRMLEIVKVLENFNDMAEEGKSRTDYVNRLLADICEYF 222
Query: 73 GYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
GY+EFL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 223 GYSEFLADKLFHLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQKLVNRGVNLQPI 282
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMAAAPGGK
Sbjct: 283 GSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGK 342
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
TTYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DR
Sbjct: 343 TTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDR 400
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
VLLDAPCSGTGVI+KDE VK ++ +D + +LQKQL+L+AID VDANS +GG IVYST
Sbjct: 401 VLLDAPCSGTGVIAKDEGVKVRRTEKDFIQIPHLQKQLLLSAIDSVDANSPTGGIIVYST 460
Query: 313 CSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
CS+ V ENE+V+DYAL+KR +VKLV L G++GF +R F+P L TRR+YPH +N
Sbjct: 461 CSVAVDENESVVDYALRKRPNVKLVDTELQIGKEGFTSYRGKHFNPKLSLTRRYYPHTYN 520
Query: 372 MDGFFVAKLKKMSNSKK--TSAGPQPSETVEQQ 402
+DGFFVAK KK++ S + AG + E++ +Q
Sbjct: 521 VDGFFVAKFKKIAPSPHDVSKAGAKEKESLIRQ 553
>gi|430814129|emb|CCJ28594.1| unnamed protein product [Pneumocystis jirovecii]
Length = 601
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 294/380 (77%), Gaps = 8/380 (2%)
Query: 21 EEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIG 80
+E K+ + LQ RI+EIV +L+NFKDL ++ SR EYV+QL D+ YYGY+ FL
Sbjct: 178 DEAKEHHSNPQFLQTRIQEIVHILNNFKDLREEDRSRSEYVEQLLEDICKYYGYSRFLAE 237
Query: 81 ALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGL 140
L +F E +E E+ E PRP+ +RTNTLKT RRDL + LINRG+NL+ + KWSKVG+
Sbjct: 238 KLFNIFNAQEAIEFFEANEVPRPVTIRTNTLKTTRRDLMNALINRGMNLEAIEKWSKVGI 297
Query: 141 VVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALM 200
+++SQVPIGATPEY++G YM+Q+ASSFLPVMAL+PQ ER++D++AAPGGKT YIAAL
Sbjct: 298 QIFESQVPIGATPEYLSGKYMIQAASSFLPVMALSPQINERILDISAAPGGKTAYIAALQ 357
Query: 201 KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260
KNTG+I+AN+ R+KSL AN+HR+G+ NTIVCN+DG E PKV+G DRVLLD+PCS
Sbjct: 358 KNTGVIFANDSSKDRIKSLVANIHRLGIKNTIVCNHDGREFPKVMG--GFDRVLLDSPCS 415
Query: 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320
GTG+ISKD+S+KT K+ +D S+LQ+QLI++AID VDANSK+GGYIVYSTCS+ + EN
Sbjct: 416 GTGIISKDQSIKTKKTEKDFDILSHLQRQLIISAIDSVDANSKTGGYIVYSTCSVTIDEN 475
Query: 321 EAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
E VIDYALKKR ++KLV GL FG GF RFR+ F+ + +R+YPHVHN+DGFFVAK
Sbjct: 476 EMVIDYALKKRPNIKLVDTGLSFGIDGFTRFRDKIFNSKMNLCKRYYPHVHNLDGFFVAK 535
Query: 380 LKKMSNSKKTSAGPQPSETV 399
LKK+SN P+P++++
Sbjct: 536 LKKISNKI-----PEPNKSI 550
>gi|448079709|ref|XP_004194444.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
gi|359375866|emb|CCE86448.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
Length = 609
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/388 (60%), Positives = 296/388 (76%), Gaps = 6/388 (1%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DL +++ R+ EIV+VL NFK+L+++G SR EYV +L D+ Y+GY+EFL L E+F P
Sbjct: 191 DLTSIRTRMIEIVKVLENFKELAEEGISRSEYVNRLIKDITIYFGYSEFLATLLFELFSP 250
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E ME E+ E RPI +RTNTLK RRRDLA L+NRGVNL P+ W+KVGL ++DSQVP
Sbjct: 251 GEAMEFFEANEIARPITIRTNTLKARRRDLAQALVNRGVNLQPIGPWTKVGLQIFDSQVP 310
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+AG Y+LQ+ASSFLPVMAL PQE ERV+DMAAAPGGKTTYI+ALMKNTG ++A
Sbjct: 311 IGATPEYLAGHYILQAASSFLPVMALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFA 370
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N+ SR KSL AN+HR+G NTIVCNYD E PKV+G DRVLLDAPCSGTGVI+KD
Sbjct: 371 NDANKSRTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRVLLDAPCSGTGVIAKD 428
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
ESVK S++ +D + +LQKQLIL+AID VDA+S +GG IVYSTCS+ V ENEAV+DYAL
Sbjct: 429 ESVKISRTEKDFVQIPHLQKQLILSAIDSVDAHSPTGGIIVYSTCSVTVAENEAVVDYAL 488
Query: 329 KKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
+KR +VKLV L G++GF +R F+PS+ TRR+YPH +N+DGF+VAK KK+++S
Sbjct: 489 RKRPNVKLVSTDLQIGKEGFTSYRGKHFNPSISLTRRYYPHTYNVDGFYVAKFKKIASSP 548
Query: 388 K--TSAGPQPSE-TVEQQTPESNVSNGD 412
+ AG + E + ++ E + N D
Sbjct: 549 HDVSKAGAKEKEASAREEAIEEGIINDD 576
>gi|374107055|gb|AEY95963.1| FADL254Wp [Ashbya gossypii FDAG1]
Length = 603
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/375 (59%), Positives = 286/375 (76%), Gaps = 3/375 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP E+ E E Q PPDL ++ R+ EIV+VL +FK ++ +G SR EY+ +L D+ Y+G
Sbjct: 168 LPNLEQEELEAQGPPDLTAIRTRMLEIVKVLEDFKHMAAEGRSRSEYIDRLLKDICQYFG 227
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RP+ +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 228 YTPFLAEKLFNLFSPAEAMEFFEANEVARPVTIRTNTLKTRRRDLAQNLVNRGVNLQPIG 287
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVP+GATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 288 SWTKVGLQIFDSQVPVGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 347
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 348 TYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 405
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK +++ +D + +LQKQLIL+AID VD+NSK GG IVYSTC
Sbjct: 406 LLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQLILSAIDSVDSNSKHGGVIVYSTC 465
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV GL G++GF +R +FH ++ TRR+YPH +N+
Sbjct: 466 SVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGKKFHHTINLTRRYYPHTYNV 525
Query: 373 DGFFVAKLKKMSNSK 387
DGFFVAK +K SK
Sbjct: 526 DGFFVAKFQKTGPSK 540
>gi|453084235|gb|EMF12280.1| NOL1/NOP2/sun family putative RNA met [Mycosphaerella populorum
SO2202]
Length = 674
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/358 (62%), Positives = 283/358 (79%), Gaps = 3/358 (0%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI EIVRVL++FK+L + G SR EY Q L D+ +YYGY+ FL L +FP
Sbjct: 211 PDLQLLRTRITEIVRVLTSFKELGEPGKSRAEYTQSLLKDICTYYGYSPFLAEKLFSLFP 270
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E ++ ++ E PRP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL +++SQV
Sbjct: 271 PQEALQFFDANETPRPMVIRTNTLRTHRRDLAHSLINRGVTLEPVGKWSKVGLQIFESQV 330
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMAAAPGGKTT++AALM+NTG+I+
Sbjct: 331 PLGATPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHLAALMRNTGVIF 390
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
+N+ R K L N+HR+GV NTIVCNY E PKV+G DRVLLDAPCSGTGVI+K
Sbjct: 391 SNDSNKDRAKGLIGNIHRLGVKNTIVCNYSALEFPKVMG--GFDRVLLDAPCSGTGVIAK 448
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + +LQKQL+LAA+D VD SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 449 DASVKTNKTEADFLRLPHLQKQLLLAAVDSVDHASKTGGYIVYSTCSVTVEENEQVVQYV 508
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L KR +VKLVP GL FG++GF +F+ RF+PS+++TRR+YPH +N+DGFFVAK KK++
Sbjct: 509 LNKRPNVKLVPTGLVFGKEGFTKFQSKRFYPSMKETRRYYPHAYNVDGFFVAKFKKIA 566
>gi|345560409|gb|EGX43534.1| hypothetical protein AOL_s00215g270 [Arthrobotrys oligospora ATCC
24927]
Length = 745
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/375 (61%), Positives = 288/375 (76%), Gaps = 4/375 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI ++VRVL +F +L + G SR +Y +Q+ D+ +YYGY+ +L L ++F
Sbjct: 240 PDLALLRTRINDVVRVLEDFSNLCEAGRSRTDYTEQIIADISAYYGYSPYLAEKLFDLFS 299
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E + E+ E PRP+ +RTNTLKT RRDLA VLINRGV L+P+ KWSKVGL V++SQV
Sbjct: 300 PSEALSFFEANETPRPLVIRTNTLKTHRRDLAQVLINRGVTLEPVGKWSKVGLQVFESQV 359
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ER +DMAAAPGGKTTY+AALMKNTG I+
Sbjct: 360 PLGATPEYLAGHYILQAASSFLPVMALAPQENERCLDMAAAPGGKTTYMAALMKNTGCIF 419
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+GV NTIVCNYD E PKV+G DRVLLDAPCSGTGVI+K
Sbjct: 420 ANDANKNRAKGLIGNIHRLGVKNTIVCNYDAREFPKVIG--GFDRVLLDAPCSGTGVIAK 477
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ +D K +LQKQL+LAAID VD NSK+GGYIVYSTCS+ V ENE V++YA
Sbjct: 478 DASVKTNKTEKDFLKLPHLQKQLLLAAIDSVDHNSKTGGYIVYSTCSVTVEENEGVVEYA 537
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
LKKR +VKLV GL FG +GFV FR F+ ++ TRR+YPH +N+DGF+VAK +K+ S
Sbjct: 538 LKKRPNVKLVDTGLTFGVEGFVSFRGKTFNDKMKMTRRYYPHKYNVDGFYVAKFRKVGPS 597
Query: 387 KKTSAGPQPSETVEQ 401
+A P E +E+
Sbjct: 598 PAGTASAVP-EIIEE 611
>gi|403217478|emb|CCK71972.1| hypothetical protein KNAG_0I01870 [Kazachstania naganishii CBS
8797]
Length = 629
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/385 (60%), Positives = 291/385 (75%), Gaps = 11/385 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP+KEE E + P+L + RI E+V+VL +FK+L KG SR EYV +L D+ Y+G
Sbjct: 193 LPSKEEEEALAGEAPNLTATRTRIIELVKVLEDFKNLGAKGRSRSEYVDRLLKDICEYFG 252
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+ FL L +F P E +E E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 253 YSPFLAEKLFNLFSPAEALEFFEANEIARPITIRTNTLKTRRRDLAQSLVNRGVNLQPIG 312
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL PQE ER++DMAAAPGGKT
Sbjct: 313 NWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPQENERILDMAAAPGGKT 372
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 373 TYISAMMKNTGCVFANDANKNRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 430
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VDANSK GG IVYSTC
Sbjct: 431 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSKKGGIIVYSTC 490
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +VKLV GL G++GF FR +FHPS++ TRR+YPH +N+
Sbjct: 491 SVAVEEDEAVVDYALRKRPNVKLVETGLLIGKEGFTSFRGKKFHPSVKMTRRYYPHTYNV 550
Query: 373 DGFFVAKLKKMSNSKKTSAGPQPSE 397
DGFFVAK +K GP P +
Sbjct: 551 DGFFVAKFQK--------TGPSPHD 567
>gi|341896868|gb|EGT52803.1| CBN-NOL-1 protein [Caenorhabditis brenneri]
Length = 687
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 217/388 (55%), Positives = 301/388 (77%), Gaps = 3/388 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLNI ++ F LPT EEIE E + P+L +++RI ++++VL +F++ SR +Y
Sbjct: 153 LQLNIANQA-TFELPTVEEIENEMKSVPNLEIIKQRIADVIQVLGDFRNRRDPAKSRTQY 211
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
V+ LK DL S YGYN++L+G +++FP EL+E +E+ + PRP+ +R N+LK +RRDLA
Sbjct: 212 VEVLKKDLCSQYGYNDYLMGKFMDLFPNGAELLEFLEANDNPRPVTIRANSLKVKRRDLA 271
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
LINRG+N+DP + W+KVGLVVYDSQVP+GATPEY+AG YM+Q +S LPVMALAPQ
Sbjct: 272 KNLINRGMNVDPAADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPG 331
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
+RV+DM +APGGKT++IAALMKN+G ++AN+ R +++ NLHR+GV N +VCN G
Sbjct: 332 DRVLDMCSAPGGKTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGE 391
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
E K+ N DR+LLDAPCSGTGVI KD+SVKTSK +D+Q+ +Q+QLIL+A+D +D
Sbjct: 392 EFAKIRP-NGFDRILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLD 450
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
ANS +GGY+VYSTCS++V ENEAV+++ L++R +LVP GL G G+ RFR++RFHPSL
Sbjct: 451 ANSPNGGYLVYSTCSVLVEENEAVVNFLLERRHCELVPTGLSIGVDGYTRFRDYRFHPSL 510
Query: 360 EKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
T+R+YPHVHN+DGF+VAK+KK+SN+K
Sbjct: 511 SMTKRYYPHVHNIDGFYVAKIKKLSNAK 538
>gi|195401394|ref|XP_002059298.1| GJ18081 [Drosophila virilis]
gi|194142304|gb|EDW58710.1| GJ18081 [Drosophila virilis]
Length = 840
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/386 (57%), Positives = 298/386 (77%), Gaps = 6/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ+++ ++++ F LP E E+ + L ++Q+RIK+I +VL++F ++G SR EY
Sbjct: 257 MQMSV-DQAEVFHLP---EPGEDADKELSLQDVQQRIKDITQVLADFGKFREEGRSRSEY 312
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QL+ DL YY YNEFL+ L+++F +LM+ +E+ E RP+ +RTN+LKTRRRDLA
Sbjct: 313 VDQLRQDLCLYYSYNEFLMSKLMDIFKLSDLMDYLEASEVARPLTIRTNSLKTRRRDLAG 372
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KW+ VGLV+++S VP+GATPEY+AG YM+Q ASS LPV+ALAPQE E
Sbjct: 373 ALINRGVNLDPLGKWTNVGLVIFNSTVPLGATPEYLAGHYMVQGASSMLPVIALAPQENE 432
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM +APGGK ++IAA+MKNTG+++AN+ R+K++ AN HR+G+ N +V D +
Sbjct: 433 RVLDMCSAPGGKGSHIAAVMKNTGVLFANDANRDRIKAVVANFHRLGIVNAVVSCEDATK 492
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ + DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID VDA
Sbjct: 493 FRSI--MTGFDRVLLDAPCTGTGVVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDA 550
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GGYIVYSTCS++ ENE VIDYALKKR+VKLVP G+DFG GF +FR+HR+HPSL
Sbjct: 551 KSATGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVPLGIDFGEPGFTKFRQHRYHPSLH 610
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
++RFYPH +NMDGF+VAKLKK SN+
Sbjct: 611 LSKRFYPHTNNMDGFYVAKLKKFSNT 636
>gi|449301057|gb|EMC97068.1| hypothetical protein BAUCODRAFT_68561 [Baudoinia compniacensis UAMH
10762]
Length = 663
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/423 (57%), Positives = 300/423 (70%), Gaps = 20/423 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQ--PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRK 58
MQ NI LP +E + K + PDL L+ RI E VRVLSNFK+L SR
Sbjct: 193 MQTNIAPAD----LPQDDEADGVKMRMLAPDLQLLRTRITETVRVLSNFKELHDPARSRA 248
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
+Y Q L D+ +YYGY+ FL L +FPP E + ++ E PRP+ +RTNTL+T RR+L
Sbjct: 249 DYTQALLNDISTYYGYSPFLATKLFSLFPPQEALAFFDANETPRPMVIRTNTLRTHRRNL 308
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
A LINRGV L+P+ KWSKVGL +++SQVP+GATPEY+AG Y+LQ+ASSFLPVMALAPQE
Sbjct: 309 AHALINRGVTLEPVGKWSKVGLQIFESQVPLGATPEYLAGQYILQAASSFLPVMALAPQE 368
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
ER +DMAAAPGGKTT++AALM+NTG I+AN+ SR K+L N+HRMGV NTIVCNY
Sbjct: 369 HERCLDMAAAPGGKTTHMAALMRNTGCIFANDANKSRAKALIGNIHRMGVKNTIVCNYSA 428
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
E P+V+G DRVLLDAPCSGTGVI+KD SVKT K+ ED + +LQKQL+L+AID V
Sbjct: 429 LEFPRVMG--GFDRVLLDAPCSGTGVIAKDASVKTHKTPEDFLRLPHLQKQLLLSAIDSV 486
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHP 357
D SK+GGYIVYSTCS+ V ENE V+ Y L KR +V+LV GL FGR+GFV++ RFHP
Sbjct: 487 DHASKTGGYIVYSTCSVTVEENEQVVQYVLNKRPNVRLVSTGLVFGREGFVKYMGKRFHP 546
Query: 358 SLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQ---TPESNVSNGDKK 414
S+++TRRFYPH +N+DGFFVAKLKK GP P V Q + + NG +
Sbjct: 547 SMKETRRFYPHAYNVDGFFVAKLKK--------TGPTPVGAVRAQGTVAEKERLVNGART 598
Query: 415 TEE 417
EE
Sbjct: 599 EEE 601
>gi|149239082|ref|XP_001525417.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450910|gb|EDK45166.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239]
Length = 637
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/374 (61%), Positives = 291/374 (77%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+EE EE Q P D+ ++ R+ EIV+VL NFK L+++G SR +YV +L D+ Y+G
Sbjct: 198 LPTEEEEEEMAQGPQDVTMVRTRMLEIVKVLENFKTLAEEGRSRTDYVTRLIKDICEYFG 257
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E +E E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 258 YSEFLADKLFNLFSPAEAIEFFEANEIARPITIRTNTLKTRRRDLAQSLVNRGVNLQPIG 317
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKT
Sbjct: 318 SWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKT 377
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG I+AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DR+
Sbjct: 378 TYISAMMKNTGCIFANDANKARTKSLIANIHRLGCRNTIVCNYDAREFPKVIG--GFDRI 435
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDANS +GG IVYSTC
Sbjct: 436 LLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSPTGGVIVYSTC 495
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV GL G++GF +R F+P L TRR+YPH +N+
Sbjct: 496 SVAVDENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGKHFNPKLNLTRRYYPHTYNV 555
Query: 373 DGFFVAKLKKMSNS 386
DGF+VAK KK++ S
Sbjct: 556 DGFYVAKFKKIAPS 569
>gi|268534138|ref|XP_002632199.1| C. briggsae CBR-NOL-1 protein [Caenorhabditis briggsae]
Length = 664
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 217/388 (55%), Positives = 302/388 (77%), Gaps = 3/388 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLNI ++ F LP+ EEIE E + P+L +++RI ++++VL +FK+ SR +Y
Sbjct: 127 LQLNIANQA-TFELPSVEEIENEMKSVPNLEIIKQRISDVIQVLGDFKNRRDPAKSRTQY 185
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
V+ LK DL S YGYN++L+G +++FP EL+E +E+ + PRP+ +R N+LK +RRDLA
Sbjct: 186 VEVLKKDLCSQYGYNDYLMGKFMDLFPNGAELLEFLEANDNPRPVTIRANSLKVKRRDLA 245
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
LINRG+N+DP ++W+KVGLVVYDSQVP+GATPEY+AG YM+Q +S LPVMALAPQ
Sbjct: 246 KNLINRGMNVDPAAEWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPG 305
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
+RV+DM +APGGKT++IAALMKN+G ++AN+ R +++ NLHR+GV N +VCN G
Sbjct: 306 DRVLDMCSAPGGKTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGE 365
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
E K+ N DR+LLDAPCSGTGVI KD+SVKTSK +D+Q+ +Q+QLIL+A+D +D
Sbjct: 366 EFSKI-KPNGFDRILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLD 424
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
ANS +GGY+VYSTCS++V ENEAV+++ L++R +LVP GL G G+ RFR++RFHPSL
Sbjct: 425 ANSPNGGYLVYSTCSVLVEENEAVVNFLLERRHCELVPTGLAIGVDGYTRFRDYRFHPSL 484
Query: 360 EKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
T+R+YPHVHN+DGF+VAK+KK+SN+K
Sbjct: 485 SMTKRYYPHVHNIDGFYVAKIKKLSNAK 512
>gi|254569392|ref|XP_002491806.1| Probable RNA m(5)C methyltransferase [Komagataella pastoris GS115]
gi|238031603|emb|CAY69526.1| Probable RNA m(5)C methyltransferase [Komagataella pastoris GS115]
gi|328351694|emb|CCA38093.1| Putative ribosomal RNA methyltransferase Nop2 [Komagataella
pastoris CBS 7435]
Length = 608
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/374 (60%), Positives = 289/374 (77%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT EE E E QPPDL ++ R+ EIV+VL FK L+Q+G SR +YV QL D+ +Y+G
Sbjct: 173 LPTPEEKELEASQPPDLTVVRTRMIEIVKVLEKFKILAQEGKSRSQYVDQLLEDICTYFG 232
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E +E E+ E RP+ +RTNTLK RRRDLA L+N+GVNL P+
Sbjct: 233 YTPFLAEKLFNLFSPSEAIEFFEANEIARPVTVRTNTLKARRRDLAQKLVNKGVNLQPIG 292
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
KW+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKT
Sbjct: 293 KWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERILDMAAAPGGKT 352
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+I+A+MKNTG ++AN+ +R KSL AN+HR+G NT+V NYD E PKV+G DRV
Sbjct: 353 TFISAMMKNTGCVFANDSNKARTKSLIANIHRLGCRNTVVSNYDAREFPKVIG--GFDRV 410
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KD +VK +++ +D + YLQ+QL+L+AID V+ANS+SGG IVYSTC
Sbjct: 411 LLDAPCSGTGVIAKDSNVKVARTEKDFIQIPYLQRQLLLSAIDSVNANSRSGGIIVYSTC 470
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV++YALKKR +V+LV GL G+ GF +R ++HPS+ TRR+YPH +N+
Sbjct: 471 SVAVEENEAVVNYALKKRPNVRLVDTGLTIGKPGFTSYRGMKYHPSVNLTRRYYPHTYNV 530
Query: 373 DGFFVAKLKKMSNS 386
DGFFVAK KK+ +S
Sbjct: 531 DGFFVAKFKKIHSS 544
>gi|308456988|ref|XP_003090900.1| CRE-NOL-1 protein [Caenorhabditis remanei]
gi|308260037|gb|EFP03990.1| CRE-NOL-1 protein [Caenorhabditis remanei]
Length = 677
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 217/391 (55%), Positives = 303/391 (77%), Gaps = 3/391 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLNI ++ F LP+ EEIE E + P+L +++RI ++++VL +FK+ SR +Y
Sbjct: 139 LQLNIANQA-TFELPSVEEIENEMKSVPNLEIIKQRIADVIQVLGDFKNRRDPAKSRTQY 197
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
V+ LK DL S YGYN++L+G +++FP EL+E +E+ + PRP+ +R N+LK +RRDLA
Sbjct: 198 VEVLKKDLCSQYGYNDYLMGKFMDLFPNGAELLEFLEANDNPRPVTIRANSLKVKRRDLA 257
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
LINRG+N+DP + W+KVGLVVYDSQVP+GATPEY+AG YM+Q +S LPVMALAPQ
Sbjct: 258 RNLINRGMNVDPAADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPG 317
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
+RV+DM +APGGKT++IAALMKN+G ++AN+ R +++ NLHR+GV N +VCN G
Sbjct: 318 DRVLDMCSAPGGKTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGE 377
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
E K+ N DR+LLDAPCSGTGVI KD+SVKTSK +D+Q+ +Q+QLIL+A+D +D
Sbjct: 378 EFAKIRP-NGFDRILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLD 436
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
ANS +GGY+VYSTCS++V ENEAV+++ L++R +LVP GL G G+ RFR++RFHPSL
Sbjct: 437 ANSPNGGYLVYSTCSVLVEENEAVVNFLLERRHCELVPTGLSIGVDGYTRFRDYRFHPSL 496
Query: 360 EKTRRFYPHVHNMDGFFVAKLKKMSNSKKTS 390
T+R+YPHVHN+DGF+VAK+KK+SN+K ++
Sbjct: 497 SMTKRYYPHVHNIDGFYVAKIKKLSNAKMST 527
>gi|190344542|gb|EDK36232.2| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC
6260]
Length = 641
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/373 (62%), Positives = 290/373 (77%), Gaps = 4/373 (1%)
Query: 14 LPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYY 72
LPT+EE EE KQ DL +++ R+ E+V+VL NFK+LS++G SR EYV +L D+ Y+
Sbjct: 210 LPTEEEEEEAKQLARQDLSSVRTRMIEVVKVLENFKELSEEGRSRSEYVDRLLKDICEYF 269
Query: 73 GYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
GY+EFL L +F P E ME E+ E RP+ +RTNTLK+RRRDLA L+NRGVNL P+
Sbjct: 270 GYSEFLAEKLFNLFSPSEAMEFFEANEIARPVTIRTNTLKSRRRDLAQRLVNRGVNLQPI 329
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGK
Sbjct: 330 GAWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALQPQENERILDMAAAPGGK 389
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
TTYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DR
Sbjct: 390 TTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDR 447
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
VLLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDANS +GG IVYST
Sbjct: 448 VLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTGGVIVYST 507
Query: 313 CSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
CS+ V ENEAV+DYAL+KR +VKLV L G++GF +R F P L TRR+YPH +N
Sbjct: 508 CSVAVDENEAVVDYALRKRPNVKLVDTELQIGKEGFTSYRGKNFSPKLSLTRRYYPHTYN 567
Query: 372 MDGFFVAKLKKMS 384
+DGFFVAK KK++
Sbjct: 568 VDGFFVAKFKKIA 580
>gi|398394152|ref|XP_003850535.1| hypothetical protein MYCGRDRAFT_74360, partial [Zymoseptoria
tritici IPO323]
gi|339470413|gb|EGP85511.1| hypothetical protein MYCGRDRAFT_74360 [Zymoseptoria tritici IPO323]
Length = 658
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/386 (59%), Positives = 291/386 (75%), Gaps = 4/386 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E VRVLS+FK+L + G SR +Y Q L D+ +YYGY+ FL L +FP
Sbjct: 219 PDLQLLRTRITETVRVLSSFKELGEPGKSRADYTQALLKDICTYYGYSPFLAEKLYSLFP 278
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
E + ++ E PRP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL +++SQV
Sbjct: 279 AQEALAFFDANETPRPMVIRTNTLRTHRRDLAHALINRGVTLEPVGKWSKVGLQIFESQV 338
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMAAAPGGKTT++AALM+NTG I+
Sbjct: 339 PLGATPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHLAALMRNTGCIF 398
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
+N+ R K L N+HR+GV NT+VCNY E PKV+G DRVLLDAPCSGTGVI+K
Sbjct: 399 SNDSNKDRAKGLIGNIHRLGVKNTVVCNYSALEFPKVMG--GFDRVLLDAPCSGTGVIAK 456
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + +LQKQL+LAA+D VD SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 457 DPSVKTNKTEADFLRLPHLQKQLLLAAVDSVDHASKTGGYIVYSTCSVTVEENEQVVQYV 516
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L KR +VKLVP GL FG++GF +++ RFHPS+++TRR+YPH +N+DGFFV+K KK +
Sbjct: 517 LNKRPNVKLVPTGLIFGKEGFTKYQSKRFHPSMKETRRYYPHAYNVDGFFVSKFKKTGPT 576
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGD 412
+ PQ S T E+Q + VS+ D
Sbjct: 577 PANAILPQGS-TEEKQQQANGVSDED 601
>gi|392595710|gb|EIW85033.1| NOL1/NOP2/sun family RNA met [Coniophora puteana RWD-64-598 SS2]
Length = 410
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/403 (58%), Positives = 296/403 (73%), Gaps = 10/403 (2%)
Query: 37 IKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIE 96
+K+ V VL NF ++ G SR EYV QL D+ +YYGYN+FL L ++FP E +E E
Sbjct: 1 MKQCVHVLRNFSRRAESGRSRSEYVDQLVADIATYYGYNDFLAQKLFQLFPVAEAIEFFE 60
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
+ E RP+ +RTNTLKTRRRDLA VLINRGVNL+P+ KW+ VGL V++S VPIGATPEY+
Sbjct: 61 ANEVARPVTIRTNTLKTRRRDLAQVLINRGVNLEPIGKWTNVGLQVFESSVPIGATPEYL 120
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
AG YMLQ+ASSFLPV+ALAPQ +ERV+DMA+APGGKTT+IAAL++NTG+++AN+ +R
Sbjct: 121 AGHYMLQAASSFLPVVALAPQPEERVLDMASAPGGKTTHIAALLQNTGVVFANDANKART 180
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
KSLTAN+HR+G N VC+YDG E PKV+G DRVLLDAPCSGTGVISKD SVK +KS
Sbjct: 181 KSLTANVHRLGCKNVTVCSYDGREFPKVIG--GFDRVLLDAPCSGTGVISKDSSVKVNKS 238
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKL 335
D Q S+LQKQLIL AID V +SK+G +VYSTCS+ V ENEAV+DYAL+KR +VKL
Sbjct: 239 ERDFQLLSHLQKQLILCAIDSVSPDSKTGAVVVYSTCSVTVDENEAVVDYALRKRPNVKL 298
Query: 336 VPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQP 395
V G+ FGR+GF +FR FHPS+ TRRFYPHVHNMDGF+VAK K K ++
Sbjct: 299 VDTGIGFGREGFTKFRGKVFHPSVSLTRRFYPHVHNMDGFYVAKFKVEKRRKPDTS---- 354
Query: 396 SETVEQQTPESNVSNGDKKTEENSEQVLM---KKATTKAKDLK 435
E EQ+ ++V + +N +Q + K+ KAK L+
Sbjct: 355 KEIAEQEAAVNDVDMEPTRFNDNEDQEFIEESKRKQMKAKGLR 397
>gi|259149299|emb|CAY82541.1| Nop2p [Saccharomyces cerevisiae EC1118]
Length = 618
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
>gi|195333786|ref|XP_002033567.1| GM21395 [Drosophila sechellia]
gi|194125537|gb|EDW47580.1| GM21395 [Drosophila sechellia]
Length = 865
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/374 (59%), Positives = 285/374 (76%), Gaps = 5/374 (1%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
L ++ D F+LP + E E ++ L +Q+RIK++ VLS+FK Q SR EY+
Sbjct: 256 LEAVDKQDVFQLPVEGE---ETEKDLTLQEVQQRIKDVSLVLSDFKRYRQADRSRGEYID 312
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVL 122
L+ DL YY YNEFL+ L++M P ELME +E+ E RP+ +RTNTLKTRRRDLA L
Sbjct: 313 LLRRDLCLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGAL 372
Query: 123 INRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182
INRGVNLDPL KW+KVGLVV++SQVP+GATPEY+AG YM+Q ASS LPVMALAPQE ER+
Sbjct: 373 INRGVNLDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERI 432
Query: 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242
+DM +APGGK ++IA++MKNTG+++AN+ R+K++ AN HR+G+ N +V DG +
Sbjct: 433 LDMCSAPGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFR 492
Query: 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+ + DRVLLDAPC+GTGV+SKD SVKT+KS D+Q+C LQ++L+L AID DA S
Sbjct: 493 NI--MTGFDRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKS 550
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
+GGYIVYSTCS++ ENE VIDYALKKR+VKLVP GLDFG +GF +FR+HRFHPSL T
Sbjct: 551 STGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHRFHPSLNLT 610
Query: 363 RRFYPHVHNMDGFF 376
+R+YPH HNMDGF+
Sbjct: 611 KRYYPHTHNMDGFY 624
>gi|256273278|gb|EEU08219.1| Nop2p [Saccharomyces cerevisiae JAY291]
Length = 618
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
>gi|323335828|gb|EGA77107.1| Nop2p [Saccharomyces cerevisiae Vin13]
Length = 618
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
>gi|151944473|gb|EDN62751.1| nucleolar protein [Saccharomyces cerevisiae YJM789]
gi|349580877|dbj|GAA26036.1| K7_Nop2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 618
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
>gi|398365157|ref|NP_014338.3| Nop2p [Saccharomyces cerevisiae S288c]
gi|730166|sp|P40991.1|NOP2_YEAST RecName: Full=Putative ribosomal RNA methyltransferase Nop2;
AltName: Full=Nucleolar protein 2
gi|576442|emb|CAA57979.1| Nop2p [Saccharomyces cerevisiae]
gi|1098483|gb|AAA99650.1| Ynl2428p [Saccharomyces cerevisiae]
gi|1301934|emb|CAA95934.1| NOP2 [Saccharomyces cerevisiae]
gi|190409050|gb|EDV12315.1| nucleolar protein NOP2 [Saccharomyces cerevisiae RM11-1a]
gi|207341676|gb|EDZ69664.1| YNL061Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814591|tpg|DAA10485.1| TPA: Nop2p [Saccharomyces cerevisiae S288c]
gi|392296931|gb|EIW08032.1| Nop2p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1093321|prf||2103264A nuclear protein
Length = 618
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
>gi|323307446|gb|EGA60720.1| Nop2p [Saccharomyces cerevisiae FostersO]
Length = 618
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
>gi|51013571|gb|AAT93079.1| YNL061W [Saccharomyces cerevisiae]
Length = 618
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKALGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
>gi|449547463|gb|EMD38431.1| hypothetical protein CERSUDRAFT_113588 [Ceriporiopsis subvermispora
B]
Length = 708
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/397 (61%), Positives = 302/397 (76%), Gaps = 5/397 (1%)
Query: 12 FRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGS 70
F LPT EE +EEK+ PD+ +QRR++E VRVL NFK L+ G SR EYVQQL D+ S
Sbjct: 264 FHLPTAEERDEEKKNGGPDVHTVQRRMRECVRVLGNFKKLAAPGRSRPEYVQQLISDIAS 323
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
YYGYN+FL L ++FP E +E E+ E PRP+ +RTNTL+TRRRDLA LINRGVNL+
Sbjct: 324 YYGYNDFLAETLFQLFPVAEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLE 383
Query: 131 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPG 190
P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+AL PQ ERV+DMA+APG
Sbjct: 384 PIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALGPQPGERVLDMASAPG 443
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
GKTT++AALM+NTG+++AN+ +R KSLTAN+HR+G N +VC+YDG E PKV+G
Sbjct: 444 GKTTHMAALMQNTGVVFANDATKARTKSLTANVHRLGCKNVVVCSYDGREFPKVMG--GF 501
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
DRVLLDAPCSGTGVISKD SVKT+KS D S+LQKQLIL AID + +SK+GGY+VY
Sbjct: 502 DRVLLDAPCSGTGVISKDASVKTNKSERDFTLLSHLQKQLILCAIDSITPDSKTGGYLVY 561
Query: 311 STCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STCS+ V ENEAV+DYAL+KR +VKLV GL+FG GF ++R F+ + TRRFYPHV
Sbjct: 562 STCSVTVDENEAVVDYALRKRPNVKLVDTGLEFGVPGFTKYRGKVFNEKVSLTRRFYPHV 621
Query: 370 HNMDGFFVAKLKKMSNSK-KTSAGPQPSETVEQQTPE 405
HNMDGF+VAK K K K A + + V+ +T E
Sbjct: 622 HNMDGFYVAKFKVEKRQKAKGKADDEDTAAVQGETAE 658
>gi|452982279|gb|EME82038.1| hypothetical protein MYCFIDRAFT_165230 [Pseudocercospora fijiensis
CIRAD86]
Length = 658
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 223/376 (59%), Positives = 285/376 (75%), Gaps = 11/376 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E VRVL++FK+L++ G SR EY L D+ +YYGY+ FL L +FP
Sbjct: 207 PDLQLLRTRITETVRVLTSFKELAEPGKSRAEYTSSLLRDICTYYGYSPFLAEKLFSLFP 266
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E + ++ E PRP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL +++SQV
Sbjct: 267 PQEALAYFDANETPRPMVIRTNTLRTHRRDLAHALINRGVTLEPVGKWSKVGLQIFESQV 326
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLP MALAPQE ERV+DMAAAPGGKTT++AALM+NTG+I+
Sbjct: 327 PLGATPEYLAGHYILQAASSFLPAMALAPQEHERVLDMAAAPGGKTTHLAALMRNTGVIF 386
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
+N+ R K L N+HR+GV NT+VCNY E PKV+G DRVLLDAPCSGTGVI+K
Sbjct: 387 SNDSNKDRAKGLIGNIHRLGVKNTVVCNYSALEFPKVMG--GFDRVLLDAPCSGTGVIAK 444
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ +D + +LQKQL+LAA+D VD SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 445 DASVKTNKTPDDFLRLPHLQKQLLLAAVDSVDHASKTGGYIVYSTCSVTVEENEQVVQYV 504
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L KR +VKLVP GL FG++GFV+++ RFH S+++TRR+YPH +N+DGFFVAK +K
Sbjct: 505 LNKRPNVKLVPTGLAFGKEGFVKYQAKRFHQSMKETRRYYPHAYNVDGFFVAKFRKT--- 561
Query: 387 KKTSAGPQPSETVEQQ 402
GP P+ V Q
Sbjct: 562 -----GPTPANAVRAQ 572
>gi|146422021|ref|XP_001486953.1| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC
6260]
Length = 641
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/373 (62%), Positives = 289/373 (77%), Gaps = 4/373 (1%)
Query: 14 LPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYY 72
LPT+EE EE KQ DL ++ R+ E+V+VL NFK+LS++G SR EYV +L D+ Y+
Sbjct: 210 LPTEEEEEEAKQLARQDLSLVRTRMIEVVKVLENFKELSEEGRSRSEYVDRLLKDICEYF 269
Query: 73 GYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
GY+EFL L +F P E ME E+ E RP+ +RTNTLK+RRRDLA L+NRGVNL P+
Sbjct: 270 GYSEFLAEKLFNLFSPSEAMEFFEANEIARPVTIRTNTLKSRRRDLAQRLVNRGVNLQPI 329
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGK
Sbjct: 330 GAWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALQPQENERILDMAAAPGGK 389
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
TTYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DR
Sbjct: 390 TTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDR 447
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
VLLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDANS +GG IVYST
Sbjct: 448 VLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTGGVIVYST 507
Query: 313 CSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
CS+ V ENEAV+DYAL+KR +VKLV L G++GF +R F P L TRR+YPH +N
Sbjct: 508 CSVAVDENEAVVDYALRKRPNVKLVDTELQIGKEGFTSYRGKNFSPKLSLTRRYYPHTYN 567
Query: 372 MDGFFVAKLKKMS 384
+DGFFVAK KK++
Sbjct: 568 VDGFFVAKFKKIA 580
>gi|367044302|ref|XP_003652531.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Thielavia terrestris NRRL
8126]
gi|346999793|gb|AEO66195.1| hypothetical protein THITE_2114134 [Thielavia terrestris NRRL 8126]
Length = 712
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/400 (57%), Positives = 291/400 (72%), Gaps = 12/400 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E VRVL NF L+++G SR EY QL D+ +YYGYNEFL L+ +FP
Sbjct: 233 PDLQMLRTRITETVRVLENFASLAEEGRSRAEYTNQLLKDICAYYGYNEFLAEKLMNLFP 292
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 293 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESNV 352
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ERV+DMAAAPGGKTT++AALMKNTG+I+
Sbjct: 353 PLGATPEYLAGHYILQAASSFLPVMALCPQENERVLDMAAAPGGKTTHMAALMKNTGVIF 412
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+GV N IVCNYD E PKV+G DRVLLDAPCSGTGVI+K
Sbjct: 413 ANDPNKARAKGLIGNIHRLGVRNAIVCNYDAREFPKVIG--GFDRVLLDAPCSGTGVIAK 470
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT++ +D + + QKQL+LAAID V+ SK+GGYIVYSTCS+ V ENE V+ YA
Sbjct: 471 DPSVKTNRDEKDFLRLPHTQKQLLLAAIDSVNHASKTGGYIVYSTCSVAVEENEQVVAYA 530
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +VKLV GL FG++GF + FHPSL+ TRR+YPH++N+DGFFVAK +K+
Sbjct: 531 LSRRPNVKLVETGLPFGKEGFTSYMGKTFHPSLKLTRRYYPHLYNIDGFFVAKFQKI--- 587
Query: 387 KKTSAGPQPSETV-EQQTPESNVSNGDKKTEENSEQVLMK 425
GP P+ V + + S+ +EN E+V+ K
Sbjct: 588 -----GPTPANAVLANGKKDKSASSATTAGDENEEEVIDK 622
>gi|291000320|ref|XP_002682727.1| proliferating-cell nucleolar antigen p120 [Naegleria gruberi]
gi|284096355|gb|EFC49983.1| proliferating-cell nucleolar antigen p120 [Naegleria gruberi]
Length = 702
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/405 (58%), Positives = 301/405 (74%), Gaps = 7/405 (1%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DL + RI+E + VL+NFKDL + G +R++Y+ LK DL YYGYN LI MF
Sbjct: 238 DLTKIHERIQENLAVLANFKDLREDGFTREDYLNLLKTDLSLYYGYNSELIDVFASMFSL 297
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
EL+E +E+ EKPRP+ +R+N LKTRRR+LA LINRG+NLDPL KWSK GL +YD+ VP
Sbjct: 298 PELIEFLEANEKPRPLTIRSNILKTRRRELAQNLINRGINLDPLDKWSKAGLKIYDANVP 357
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
+GATPEY+AG YMLQ ASSFLPVMALAP+E E+VIDMAAAPGGKTTY++ALMKNTG+I+A
Sbjct: 358 VGATPEYLAGHYMLQGASSFLPVMALAPKENEKVIDMAAAPGGKTTYLSALMKNTGVIFA 417
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N++ R K+L AN+HRMG N IV NYDG ++P++L VDRVLLDAPC+G GVIS+D
Sbjct: 418 NDVNVDRTKALIANIHRMGCRNCIVANYDGRDMPQILP-TKVDRVLLDAPCTGLGVISRD 476
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
S+K+ K +DI+ LQ++LILAAID VDA+S++GGYIVYSTCS+ V ENEAV++YAL
Sbjct: 477 PSIKSQKGKKDIELLCKLQRELILAAIDCVDADSETGGYIVYSTCSVSVDENEAVVNYAL 536
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK 388
KKR VK+VP GL FG GF++ E F PSL+ T R++PHVHNMDGF+V KLKK+ N KK
Sbjct: 537 KKRHVKIVPTGLQFGTPGFIKIGERHFDPSLKLTMRYFPHVHNMDGFYVCKLKKLKNGKK 596
Query: 389 TSAGPQPSETVEQQ------TPESNVSNGDKKTEENSEQVLMKKA 427
S Q E +Q + E N D+K E+ + L+++A
Sbjct: 597 LSEEEQVREEKNEQRIQKDKSDEKNRRIRDQKDREDKNKKLLEEA 641
>gi|238879878|gb|EEQ43516.1| nucleolar protein NOP2 [Candida albicans WO-1]
Length = 618
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/374 (60%), Positives = 290/374 (77%), Gaps = 3/374 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP EE EE + P D+ ++ R+ E+V+VL NFK+L+++GTSR +Y +L D+ Y+G
Sbjct: 185 LPPAEEEEEMAKGPQDVTMVRTRMLEVVKVLENFKELAEEGTSRTDYTNRLLKDICEYFG 244
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+EFL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+N+GVNL P+
Sbjct: 245 YSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVNLQPIG 304
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKT
Sbjct: 305 SWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKT 364
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G NTIVCNYD E PKV+G DRV
Sbjct: 365 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRV 422
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KDESVK S++ +D + +LQKQL+L+AID VDA+S +GG IVYSTC
Sbjct: 423 LLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVYSTC 482
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
SI V ENEAV+DYAL+KR +VKLV GL G++GF +R F+P + TRR+YPH +N+
Sbjct: 483 SIAVDENEAVVDYALRKRPNVKLVDTGLTIGKEGFTSYRGKHFNPKISLTRRYYPHTYNV 542
Query: 373 DGFFVAKLKKMSNS 386
DGF+VAK KK++ S
Sbjct: 543 DGFYVAKFKKIAPS 556
>gi|603587|emb|CAA58502.1| Yna1p [Saccharomyces cerevisiae]
Length = 473
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 36 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 95
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 96 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 155
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 156 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 215
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 216 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 273
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 274 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 333
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 334 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 393
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 394 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGMIHSDFATFEDEEDDKYIEKSV 453
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 454 KNNLLKKGV-----NPKAKRPSNEK 473
>gi|365758690|gb|EHN00521.1| Nop2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 619
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/445 (54%), Positives = 312/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 182 LPTEEQEEMMAQEAPNLTSTRTRMIEIVKVLENFKTLGAEGRSRVEYVDRLLKDICEYFG 241
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 242 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 301
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 302 PWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 361
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 362 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 419
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 420 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 479
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV++YAL+KR +VKLV GL G++GF +R FHPS++ RR+YPH +N+
Sbjct: 480 SVAVEEDEAVVNYALRKRPNVKLVETGLAIGKEGFTSYRGKNFHPSVKLARRYYPHTYNV 539
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E +
Sbjct: 540 DGFFVAKFQKIGPSSFDDNQASAREKETAARKEALEEGIIHSDFATFEDEEDEKYINKSV 599
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LK+ N + PSNEK
Sbjct: 600 KNNLLKRGV-----NPKAKKPSNEK 619
>gi|401842841|gb|EJT44878.1| NOP2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 619
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/445 (54%), Positives = 312/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 182 LPTEEQEEMMAQEAPNLTSTRTRMIEIVKVLENFKTLGAEGRSRVEYVDRLLKDICEYFG 241
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 242 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 301
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 302 PWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 361
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 362 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 419
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 420 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 479
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV++YAL+KR +VKLV GL G++GF +R FHPS++ RR+YPH +N+
Sbjct: 480 SVAVEEDEAVVNYALRKRPNVKLVETGLAIGKEGFTSYRGKNFHPSVKLARRYYPHTYNV 539
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E +
Sbjct: 540 DGFFVAKFQKIGPSSFDDNQASAREKETAARKEALEEGIIHSDFATFEDEEDEKYINKSV 599
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LK+ N + PSNEK
Sbjct: 600 KNNLLKRGV-----NPKAKKPSNEK 619
>gi|336379782|gb|EGO20936.1| hypothetical protein SERLADRAFT_475366 [Serpula lacrymans var.
lacrymans S7.9]
Length = 491
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/377 (63%), Positives = 294/377 (77%), Gaps = 4/377 (1%)
Query: 7 EESDEFRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK 65
+E E LPT EE E+EK+ D+ LQRR++ VRVL NFK L KG SR EY+ QL
Sbjct: 46 DEDGEIPLPTPEEREQEKKSGGSDVNMLQRRMRLCVRVLGNFKKLHAKGRSRSEYLDQLI 105
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
D+GSYYGYN+FL L ++FP E +E E+ E RP+ +RTNTL+TRRRDLA L+NR
Sbjct: 106 SDIGSYYGYNDFLTEKLSQLFPVAEAIEFFEANEVARPVTIRTNTLRTRRRDLAQTLVNR 165
Query: 126 GVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185
GV L+P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+ALAPQ ER++DM
Sbjct: 166 GVTLEPIGKWTNVGLQVFESGVPIGATPEYLAGHYMLQAASSFLPVIALAPQPNERILDM 225
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APGGKTT+IAAL++NTG+++AN+ +R KSLTAN+HR+G N IVC+YDG E P+V+
Sbjct: 226 ASAPGGKTTHIAALLQNTGVVFANDANQARTKSLTANVHRLGCKNVIVCSYDGREFPRVI 285
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
G DRVLLDAPCSGTGVISKD SVK +KS D ++LQKQLIL AID V +SK+G
Sbjct: 286 G--GFDRVLLDAPCSGTGVISKDSSVKVNKSERDFHLLAHLQKQLILCAIDSVSPDSKTG 343
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
GY+VYSTCS+ V ENEAV+DYAL+KR +VKLV GL+FGR+GF RFR F+PSL TRR
Sbjct: 344 GYLVYSTCSVTVDENEAVVDYALRKRSNVKLVDTGLEFGREGFTRFRGKIFNPSLNLTRR 403
Query: 365 FYPHVHNMDGFFVAKLK 381
FYPHVHNMDGF+VAK K
Sbjct: 404 FYPHVHNMDGFYVAKFK 420
>gi|407922983|gb|EKG16073.1| Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Macrophomina
phaseolina MS6]
Length = 786
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/403 (56%), Positives = 295/403 (73%), Gaps = 11/403 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +RVL++F++L++ G SR EY Q+ D+ +YYGY+ F+ L +FP
Sbjct: 266 PDLQLLRTRITDTIRVLNDFQNLAETGRSRAEYTSQVLKDICAYYGYSPFMAEKLWTLFP 325
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL +++SQV
Sbjct: 326 PSEAFAFFEANETPRPVVIRTNTLRTHRRQLAQALINRGVTLEPVGKWSKVGLQIFESQV 385
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
PIGATPEY+AG Y+LQ+ASSFLPVMALAPQE ER++DMA+APGGKTT+IAALMKNTG I+
Sbjct: 386 PIGATPEYLAGHYILQAASSFLPVMALAPQENERILDMASAPGGKTTHIAALMKNTGCIF 445
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+HR+GV NTIVCNYD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 446 ANDANKDRAKGLIGNIHRLGVKNTIVCNYDAMEFPRVIG--GFDRVLLDAPCSGTGVIAK 503
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ +D + +LQKQL+L AID VD +SK+GGYIVYSTCS+ V ENE V+ YA
Sbjct: 504 DASVKTNKTEKDFMRLPHLQKQLLLHAIDSVDHSSKTGGYIVYSTCSVTVDENERVVQYA 563
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L+KR +VKLV GL FG++GF F+ +FH SL++TRR+YPH +N+DGFFVAK KK+
Sbjct: 564 LEKRPNVKLVSTGLTFGKEGFTSFQGRQFHHSLKETRRYYPHAYNVDGFFVAKFKKI--- 620
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
GP P+ V + + + +E+ +V+ K T
Sbjct: 621 -----GPTPANAVSAANASTKAAKSYQPKKEDGTEVVDKTPIT 658
>gi|365763345|gb|EHN04874.1| Nop2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 602
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/411 (57%), Positives = 300/411 (72%), Gaps = 6/411 (1%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSE 420
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEE 589
>gi|171696268|ref|XP_001913058.1| hypothetical protein [Podospora anserina S mat+]
gi|170948376|emb|CAP60540.1| unnamed protein product [Podospora anserina S mat+]
Length = 747
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/387 (58%), Positives = 286/387 (73%), Gaps = 19/387 (4%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F +L+++G R EY QL D+ +YYGYNEFL L+ +FP
Sbjct: 232 PDLQMLRTRITETIRVLEDFGELAEEGRDRAEYTNQLLKDVCAYYGYNEFLAEKLMNLFP 291
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V+DS V
Sbjct: 292 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNV 351
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ER +DMA+APGGKTT++AALMKNTG+I+
Sbjct: 352 PLGATPEYLAGHYILQAASSFLPVMALCPQENERCLDMASAPGGKTTHMAALMKNTGVIF 411
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+GV NTIVCNYD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 412 ANDPSKARAKGLIGNIHRLGVRNTIVCNYDAREFPRVMG--GFDRVLLDAPCSGTGVIAK 469
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT++ +D Q+ +LQKQLILAAID V+ SK+GGY+VYSTCS+ V ENE V+ YA
Sbjct: 470 DPSVKTNRDEKDFQQLPHLQKQLILAAIDSVNHASKTGGYLVYSTCSVAVEENEQVVAYA 529
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +V+LV GL FG++GF F FHPSL+ TRR+YPH++N+DGFFVAK +K+
Sbjct: 530 LSRRPNVRLVETGLPFGKEGFTSFMGKEFHPSLKLTRRYYPHLYNVDGFFVAKFQKI--- 586
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDK 413
GP P P + ++NG K
Sbjct: 587 -----GPTP--------PNAVLANGKK 600
>gi|353237259|emb|CCA69236.1| probable NOP2-nucleolar protein [Piriformospora indica DSM 11827]
Length = 683
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/380 (61%), Positives = 285/380 (75%), Gaps = 6/380 (1%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPP-DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYV 61
+ + EE D F LP+ EE E+E Q DL +Q+RI+ R+L+ F L++ G SR EYV
Sbjct: 233 MELDEEIDGFVLPSAEEREQEAQSGGVDLAVVQKRIRACTRILNRFTKLAEPGRSRSEYV 292
Query: 62 QQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADV 121
QL D+ YGYN+FL L ++F E +E E+ E PRP+ +RTNTL+ RRRDLA
Sbjct: 293 AQLIADIAYNYGYNQFLAERLFQLFTVNEAIEFFEANETPRPVTIRTNTLRCRRRDLAQA 352
Query: 122 LINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER 181
LINRGVNL+P+ KWSK GL V++S VPIGATPEY+AG YMLQSASSFLPV+AL P+ ER
Sbjct: 353 LINRGVNLEPIGKWSKEGLQVFESSVPIGATPEYLAGHYMLQSASSFLPVLALDPKPNER 412
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
V+DMA+APGGKTTYI+ALM+NTGL++AN+ +R KSL+AN+HR+G N IVCNYDG E
Sbjct: 413 VLDMASAPGGKTTYISALMQNTGLVFANDATKARTKSLSANVHRLGCKNVIVCNYDGREF 472
Query: 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301
PKV+G DRVLLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID VD
Sbjct: 473 PKVIG--GFDRVLLDAPCSGTGVISKDPSVKINKSERDFVLLSHLQKQLILCAIDSVD-- 528
Query: 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
K+ +VYSTCSIM E+EAV+ YAL+KR VKLVP GL+FG++GF FR +F SL+
Sbjct: 529 PKTAAIVVYSTCSIMPEEDEAVVAYALRKRPHVKLVPTGLEFGKEGFTNFRGKQFGESLK 588
Query: 361 KTRRFYPHVHNMDGFFVAKL 380
TRRFYPHVHNMDGF+VAKL
Sbjct: 589 LTRRFYPHVHNMDGFYVAKL 608
>gi|323331975|gb|EGA73387.1| Nop2p [Saccharomyces cerevisiae AWRI796]
Length = 485
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/446 (54%), Positives = 314/446 (70%), Gaps = 6/446 (1%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 36 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 95
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 96 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 155
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 156 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 215
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 216 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 273
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 274 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 333
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 334 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 393
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 394 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 453
Query: 430 KAKDLKKKTSGLAENGNVESPSNEKR 455
K LKK + A+ + S+ KR
Sbjct: 454 KNNLLKKGVNPKAKRPSKRKISSHKR 479
>gi|336367055|gb|EGN95400.1| hypothetical protein SERLA73DRAFT_112877 [Serpula lacrymans var.
lacrymans S7.3]
Length = 450
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/377 (63%), Positives = 294/377 (77%), Gaps = 4/377 (1%)
Query: 7 EESDEFRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK 65
+E E LPT EE E+EK+ D+ LQRR++ VRVL NFK L KG SR EY+ QL
Sbjct: 5 DEDGEIPLPTPEEREQEKKSGGSDVNMLQRRMRLCVRVLGNFKKLHAKGRSRSEYLDQLI 64
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
D+GSYYGYN+FL L ++FP E +E E+ E RP+ +RTNTL+TRRRDLA L+NR
Sbjct: 65 SDIGSYYGYNDFLTEKLSQLFPVAEAIEFFEANEVARPVTIRTNTLRTRRRDLAQTLVNR 124
Query: 126 GVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185
GV L+P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+ALAPQ ER++DM
Sbjct: 125 GVTLEPIGKWTNVGLQVFESGVPIGATPEYLAGHYMLQAASSFLPVIALAPQPNERILDM 184
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APGGKTT+IAAL++NTG+++AN+ +R KSLTAN+HR+G N IVC+YDG E P+V+
Sbjct: 185 ASAPGGKTTHIAALLQNTGVVFANDANQARTKSLTANVHRLGCKNVIVCSYDGREFPRVI 244
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
G DRVLLDAPCSGTGVISKD SVK +KS D ++LQKQLIL AID V +SK+G
Sbjct: 245 G--GFDRVLLDAPCSGTGVISKDSSVKVNKSERDFHLLAHLQKQLILCAIDSVSPDSKTG 302
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
GY+VYSTCS+ V ENEAV+DYAL+KR +VKLV GL+FGR+GF RFR F+PSL TRR
Sbjct: 303 GYLVYSTCSVTVDENEAVVDYALRKRSNVKLVDTGLEFGREGFTRFRGKIFNPSLNLTRR 362
Query: 365 FYPHVHNMDGFFVAKLK 381
FYPHVHNMDGF+VAK K
Sbjct: 363 FYPHVHNMDGFYVAKFK 379
>gi|366995557|ref|XP_003677542.1| hypothetical protein NCAS_0G03030 [Naumovozyma castellii CBS 4309]
gi|342303411|emb|CCC71190.1| hypothetical protein NCAS_0G03030 [Naumovozyma castellii CBS 4309]
Length = 490
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/385 (59%), Positives = 291/385 (75%), Gaps = 11/385 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ EE QQ P+L ++ RI EIV+VL +FK+L +G SR EY +L D+ Y+G
Sbjct: 53 LPTEEQEEELAQQQPNLTAIRTRIIEIVKVLEDFKNLGAEGRSRNEYTDRLLKDICEYFG 112
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E +E E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 113 YTPFLAEKLFNLFSPAEALEFFEANEIARPITIRTNTLKTRRRDLAQALVNRGVNLQPIG 172
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 173 SWTKVGLQIFDSQVPIGATPEYLAGNYILQAASSFLPVIALDPHENERILDMAAAPGGKT 232
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 233 TYISAMMKNTGCVFANDANKNRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 290
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 291 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 350
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +VKLV GL G++GF FR +FHPS++ TRR+YPH +N+
Sbjct: 351 SVAVEEDEAVVDYALRKRPNVKLVDTGLAIGKEGFTSFRGKKFHPSIKLTRRYYPHTYNV 410
Query: 373 DGFFVAKLKKMSNSKKTSAGPQPSE 397
DGF+VAK +K+ GP P +
Sbjct: 411 DGFYVAKFQKI--------GPSPHD 427
>gi|452823461|gb|EME30471.1| RNA cytosine methyltransferase [Galdieria sulphuraria]
Length = 572
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 216/356 (60%), Positives = 282/356 (79%), Gaps = 2/356 (0%)
Query: 36 RIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELI 95
RI +V++LS+FK SR EY+ LK D+G YGYN FLI +MF P+E ME I
Sbjct: 217 RIALVVQILSDFKSRKDGLHSRSEYLSLLKTDIGYVYGYNAFLIEEFFDMFSPLECMEFI 276
Query: 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEY 155
E+ +KPRP+ +RTNTLKT+RR LA LI+RGVN+DPL WSK GLVVY+S+VPIGATPEY
Sbjct: 277 EASDKPRPLVIRTNTLKTKRRQLAQALISRGVNVDPLENWSKEGLVVYESRVPIGATPEY 336
Query: 156 MAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR 215
+AG+YM+Q++SSF+PV+AL+PQEKE+++DMAA+PGGKTT+++ALM+NTG++YAN+ A R
Sbjct: 337 LAGYYMIQASSSFIPVLALSPQEKEKILDMAASPGGKTTFVSALMRNTGIVYANDSNADR 396
Query: 216 LKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSK 275
+KSL AN+HR+GV NTIV YDG +L + L +DRVLLDAPCSGTG+IS D SVKTS+
Sbjct: 397 IKSLVANIHRLGVENTIVSCYDGRKLVSI--LRDLDRVLLDAPCSGTGIISHDPSVKTSR 454
Query: 276 SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
DIQ+ S +QKQL+LAA+D +A+S +GG IVYSTCS++V ENEAVIDY LK R VK+
Sbjct: 455 DRPDIQRNSVIQKQLLLAAVDCCNAHSATGGIIVYSTCSVLVEENEAVIDYCLKHRFVKV 514
Query: 336 VPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
V G+ FG GF ++R +FHPSL++ RRF+PH+HNMDGFFV KLKK+ + + +A
Sbjct: 515 VSSGIPFGIPGFTKYRGKQFHPSLQEARRFFPHIHNMDGFFVCKLKKLKSGVRYNA 570
>gi|307212380|gb|EFN88172.1| Putative RNA methyltransferase NOL1 [Harpegnathos saltator]
Length = 778
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/383 (59%), Positives = 298/383 (77%), Gaps = 6/383 (1%)
Query: 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQ 62
+N+ + F PT+EE+ +L ++Q+RI++++ VLS+FK L SR EY+
Sbjct: 388 INMMSQQSVFSFPTEEEL----ANVTNLKDIQQRIRDVIMVLSDFKRLRDGNRSRSEYIT 443
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVL 122
L+ DL +YY YN+FL+ L++MF EL+E +E+ E RP+ +RTNTL+TRRRDLA+ L
Sbjct: 444 LLQKDLCTYYSYNDFLMLKLIQMFSLDELLEYLEASEVQRPMTIRTNTLRTRRRDLAEAL 503
Query: 123 INRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182
INRGVNLDPL KW+KVGLVVY SQVP+GATPEY+AG Y++Q ASSFLPV AL P+E ER+
Sbjct: 504 INRGVNLDPLGKWTKVGLVVYSSQVPMGATPEYLAGHYIIQGASSFLPVEALNPKENERI 563
Query: 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242
+DM AAPGGK ++IAALMKNTG+++AN++ RLK++ N HR+G+ N++VC+YDG + P
Sbjct: 564 LDMCAAPGGKASHIAALMKNTGVLFANDVNQDRLKAVVGNFHRLGIVNSVVCSYDGRKFP 623
Query: 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+ + DRVLLDAPC+GTGV++KD SVKT+K DIQ+C LQ++L+LAAID V+A S
Sbjct: 624 TI--MKGFDRVLLDAPCTGTGVVAKDPSVKTNKDEVDIQRCCTLQRELLLAAIDCVNARS 681
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
++G IVYSTCSI+ ENE +IDYALKKRDVKL+P L+FG GF +R+HRFHPSL+ T
Sbjct: 682 ETGSIIVYSTCSILPEENEWIIDYALKKRDVKLLPTDLEFGTDGFTSYRQHRFHPSLKLT 741
Query: 363 RRFYPHVHNMDGFFVAKLKKMSN 385
+RFYPHVHNMDGFFVAKLKK SN
Sbjct: 742 KRFYPHVHNMDGFFVAKLKKFSN 764
>gi|426200239|gb|EKV50163.1| hypothetical protein AGABI2DRAFT_216573 [Agaricus bisporus var.
bisporus H97]
Length = 551
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/431 (57%), Positives = 315/431 (73%), Gaps = 12/431 (2%)
Query: 11 EFRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
E RLPT E EEEK + PD+ +Q+R+K VRVL NFK ++KG R EY +QL D+
Sbjct: 120 ELRLPTVTEREEEKNKGGPDVHTVQQRMKHCVRVLGNFKKRAEKGRLRHEYTEQLISDIA 179
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
SYYGYNEFL L ++F E +E E+ E PRP+ +RTNTL+TRRRDLA LINRGVNL
Sbjct: 180 SYYGYNEFLAEKLFQLFSVAEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNL 239
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
+P+ KW+ VGL V++S VP+GATPEY+AG YMLQ+ASSFLPV+AL+PQ ERV+DMA+AP
Sbjct: 240 EPIGKWTNVGLQVFESSVPVGATPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAP 299
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGK T+IAAL++NTG+++AN+ +R KSLTAN+HR+G N +VC+YDG E PKV+G
Sbjct: 300 GGKATHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVMG--G 357
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID V SK+GGY+V
Sbjct: 358 FDRVLLDAPCSGTGVISKDSSVKVNKSERDFTLLSHLQKQLILCAIDSVSPESKTGGYLV 417
Query: 310 YSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
YSTCS+ V ENEAV+DYAL+KR +V LV GL FGR+GF ++R F+PS+ TRRFYPH
Sbjct: 418 YSTCSVTVDENEAVVDYALRKRPNVTLVDTGLPFGREGFTKYRGKVFNPSIGLTRRFYPH 477
Query: 369 VHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDK-KTEENSEQVLMKKA 427
HNMDGFFVAK K SK + SE + Q ++ +GD+ + N ++V ++KA
Sbjct: 478 AHNMDGFFVAKFKIGKRSKSKTI----SEVNDVQMTVASAESGDEIGFDPNEDKVYIEKA 533
Query: 428 ---TTKAKDLK 435
KAK L+
Sbjct: 534 KRRQMKAKGLR 544
>gi|409082406|gb|EKM82764.1| hypothetical protein AGABI1DRAFT_118201 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 551
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/431 (57%), Positives = 315/431 (73%), Gaps = 12/431 (2%)
Query: 11 EFRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
E RLPT E EEEK + PD+ +Q+R+K VRVL NFK ++KG R EY +QL D+
Sbjct: 120 ELRLPTVTEREEEKNKGGPDVHTVQQRMKHCVRVLGNFKKRAEKGRLRHEYTEQLISDIA 179
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
SYYGYNEFL L ++F E +E E+ E PRP+ +RTNTL+TRRRDLA LINRGVNL
Sbjct: 180 SYYGYNEFLAEKLFQLFSVAEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNL 239
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
+P+ KW+ VGL +++S VP+GATPEY+AG YMLQ+ASSFLPV+AL+PQ ERV+DMA+AP
Sbjct: 240 EPIGKWTNVGLQIFESSVPVGATPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAP 299
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGK T+IAAL++NTG+++AN+ +R KSLTAN+HR+G N +VC+YDG E PKV+G
Sbjct: 300 GGKATHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVMG--G 357
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID V SK+GGY+V
Sbjct: 358 FDRVLLDAPCSGTGVISKDSSVKVNKSERDFTLLSHLQKQLILCAIDSVSPESKTGGYLV 417
Query: 310 YSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
YSTCS+ V ENEAV+DYAL+KR +V LV GL FGR+GF ++R F+PS+ TRRFYPH
Sbjct: 418 YSTCSVTVDENEAVVDYALRKRPNVTLVDTGLPFGREGFTKYRGKVFNPSIGLTRRFYPH 477
Query: 369 VHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDK-KTEENSEQVLMKKA 427
HNMDGFFVAK K SK + SE + Q ++ +GD+ + N ++V ++KA
Sbjct: 478 AHNMDGFFVAKFKIGKRSKSKTI----SEVNDVQMTVASAESGDEIGFDPNEDKVYIEKA 533
Query: 428 ---TTKAKDLK 435
KAK L+
Sbjct: 534 KRRQMKAKGLR 544
>gi|389748961|gb|EIM90138.1| NOL1/NOP2/sun family RNA met [Stereum hirsutum FP-91666 SS1]
Length = 699
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/376 (63%), Positives = 296/376 (78%), Gaps = 5/376 (1%)
Query: 9 SDEFRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQK-GTSRKEYVQQLKL 66
+EF LP+ +E EEEK+ P+L +QRR++E VRVL +K L +K G R EY+ QL
Sbjct: 252 GEEFVLPSVQEREEEKKNGGPELHVVQRRMRECVRVLGKWKKLGEKSGRPRSEYIDQLVS 311
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
D+ SYYGYN+FL L ++FP E +E E+ E PRP+ +RTNTL+TRRRDLA LINRG
Sbjct: 312 DIASYYGYNDFLAEKLFQLFPIAEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRG 371
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
VNL+P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+AL+PQ +ERV+DMA
Sbjct: 372 VNLEPIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALSPQPQERVLDMA 431
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
+APGGKTT+IAAL++NTG+++AN+ +R KSLTAN+HR+G N +VC+YDG E PKV+G
Sbjct: 432 SAPGGKTTHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVMG 491
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
DRVLLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID V+ NSK+GG
Sbjct: 492 --GFDRVLLDAPCSGTGVISKDSSVKVNKSDRDFALLSHLQKQLILCAIDSVNPNSKTGG 549
Query: 307 YIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
YIVYSTCS+ V ENEAV+DYAL+KR +VKLV GL+FG+ G+ R+R F S++ TRRF
Sbjct: 550 YIVYSTCSVTVDENEAVVDYALRKRPNVKLVDTGLEFGKPGYARYRGKTFDESVKLTRRF 609
Query: 366 YPHVHNMDGFFVAKLK 381
YPHVHNMDGFFVAK K
Sbjct: 610 YPHVHNMDGFFVAKFK 625
>gi|451999452|gb|EMD91914.1| hypothetical protein COCHEDRAFT_1133863 [Cochliobolus
heterostrophus C5]
Length = 728
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 255/507 (50%), Positives = 334/507 (65%), Gaps = 32/507 (6%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQP------PDLPNLQRRIKEIVRVLSNFKDLSQKG 54
MQ NI E R E+ E+E +P D+ L+ R+ + +RVL +FK+L+++G
Sbjct: 196 MQTNIVGE----RPKILEDEEDEDGRPITNLVNQDIQLLRTRLTDTIRVLDDFKNLAEEG 251
Query: 55 TSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTR 114
SR EY L D+ +YYGY+EFL L+ +FPP E E+ E PRPI +RTNTL+T
Sbjct: 252 RSRAEYRASLLKDICAYYGYSEFLADKLLSLFPPREAQAFFEANETPRPIVIRTNTLRTH 311
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
RRDLA LINRGV L+P+ KWSKVGL ++D+QVP+GATPEY+AG Y+LQ+ASSFLPVMAL
Sbjct: 312 RRDLAQALINRGVQLEPVGKWSKVGLQIFDAQVPLGATPEYLAGHYILQAASSFLPVMAL 371
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
APQE ERV+DMAAAPGGKTT++AALMKNTG I+AN+ R K L N+HR+G N IV
Sbjct: 372 APQENERVLDMAAAPGGKTTHLAALMKNTGCIFANDANKDRAKGLIGNIHRLGARNVIVS 431
Query: 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294
+Y E P+V ++ DRVLLDAPCSGTGVI+KD SVKT+K+ D K +LQKQL+LAA
Sbjct: 432 HYSALEFPRV--MSGFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLLLAA 489
Query: 295 IDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREH 353
ID V+ +SK+GGYIVYSTCS+ V ENE V+ YAL KR +VKLV GL FG++GF R
Sbjct: 490 IDSVNHHSKTGGYIVYSTCSVTVEENEQVVQYALNKRPNVKLVETGLTFGKEGFTRIGGK 549
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDK 413
FHPS++ TRR+YPH +N+DGFFVAK KK+ GP P + E+ +NG +
Sbjct: 550 TFHPSMKMTRRYYPHTYNVDGFFVAKFKKI--------GPTPPNAIGAN--EATKTNGAR 599
Query: 414 KTEENSEQVLMKKATTKA-KDLKKKTSGLAENGN---VESPSNEKRRKKRKFPSREEISK 469
++ +E ++ + A D + G E + +E + RKK K P R + K
Sbjct: 600 NSDATTEVEIVDRTPIGADSDEESDFGGFDEEEDQKYIEKAQAKSMRKKGKDP-RAIVPK 658
Query: 470 VREEKRKTLREK---VSSK-KAGSKDK 492
+ +EK VS+K KAG K+K
Sbjct: 659 TDKGTNGASKEKNSHVSAKEKAGRKEK 685
>gi|170087176|ref|XP_001874811.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650011|gb|EDR14252.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 561
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/386 (61%), Positives = 295/386 (76%), Gaps = 4/386 (1%)
Query: 8 ESDEFRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKL 66
+++ F LPT E EEEK + PDL +QRR++E VRVL F ++KG SR EY QL
Sbjct: 121 DAEPFHLPTAAEREEEKARGGPDLQVVQRRLRECVRVLEKFSKRAEKGRSRSEYTGQLMA 180
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
D+ SYYGYN+FL+ ++FP E +E E+ E RP+ +RTNTL+TRRRDLA L+NRG
Sbjct: 181 DIASYYGYNDFLVEKFFQLFPVAEAIEFFEANEVSRPVTIRTNTLRTRRRDLAQALVNRG 240
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
VNL+P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASS LPV+AL+PQ ERV+DMA
Sbjct: 241 VNLEPIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSLLPVIALSPQPNERVLDMA 300
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
+APGGKTT+IAAL++NTG+++AN+ +R KSLTAN+HR+G N +VC+YDG E PKV+G
Sbjct: 301 SAPGGKTTHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVMG 360
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
DRVLLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID V SK+GG
Sbjct: 361 --GFDRVLLDAPCSGTGVISKDSSVKLNKSDRDFTLLSHLQKQLILCAIDSVSPESKTGG 418
Query: 307 YIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
Y+VYSTCS+ V ENEAV+DYAL+KR +VKLV GL FGR+GF ++R F+PSL TRRF
Sbjct: 419 YLVYSTCSVTVDENEAVVDYALRKRPNVKLVDTGLSFGREGFTKYRGKTFNPSLNLTRRF 478
Query: 366 YPHVHNMDGFFVAKLKKMSNSKKTSA 391
YPHVHNMDGFFV+K K +K SA
Sbjct: 479 YPHVHNMDGFFVSKFKVEKRTKAQSA 504
>gi|336272654|ref|XP_003351083.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Sordaria macrospora k-hell]
gi|380093642|emb|CCC08606.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 744
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/399 (56%), Positives = 289/399 (72%), Gaps = 11/399 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +RVL +F L+++G SR EY QL D+ +YYGYNEFL L +FP
Sbjct: 222 PDLQMLRTRITDAIRVLDDFSSLAEEGKSRAEYTSQLIKDICAYYGYNEFLAEKLFNLFP 281
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V+DS V
Sbjct: 282 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNV 341
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ERV+DMA+APGGKTT++AALMKNTG+I+
Sbjct: 342 PLGATPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHMAALMKNTGVIF 401
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+HR+G N IVCNYD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 402 ANDPSKQRAKGLIGNIHRLGARNVIVCNYDAREFPRVMG--GFDRVLLDAPCSGTGVIAK 459
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT++ +D + +LQKQL+LAAID VD SK+GGY+VYSTCS+ V ENE V+ YA
Sbjct: 460 DPSVKTNRDEKDFLQLPHLQKQLLLAAIDSVDHASKTGGYVVYSTCSVAVEENEQVVAYA 519
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +VKLV GL FG++GF F FHPSL+ TRR+YPH++N+DGFFVAK +K+
Sbjct: 520 LSRRPNVKLVETGLAFGKEGFTSFMGKSFHPSLKLTRRYYPHLYNVDGFFVAKFQKL--- 576
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMK 425
GP P+ V + + + +T + SE+V+ K
Sbjct: 577 -----GPTPANAVRANGVDKSNKPLEGETLKESEEVVDK 610
>gi|320581196|gb|EFW95417.1| RNA m(5)C methyltransferase, putative [Ogataea parapolymorpha DL-1]
Length = 608
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/429 (54%), Positives = 319/429 (74%), Gaps = 9/429 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+EE EE KQ PDL ++ R+ E+V+VL +FK+L+++G SR EYV +L D+ Y+G
Sbjct: 168 LPTEEEEEEMKQSGPDLTMVRTRMLEVVKVLEDFKNLAEEGRSRVEYVDRLLKDICEYFG 227
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E +E E+ E RP+ +RTNTL TRRR+LA L+N+GVNL P+
Sbjct: 228 YTPFLAEKLFNLFSPSEAIEFFEANEIHRPVTIRTNTLVTRRRELAQTLVNKGVNLQPIG 287
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL V+DSQVPIGATPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKT
Sbjct: 288 PWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERILDMAAAPGGKT 347
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G TNT+VCNYD E PKV+G DRV
Sbjct: 348 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCTNTVVCNYDAREFPKVIG--GFDRV 405
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI+KD++VK +++ +D + +LQKQL+L+AID VDA+S +GG IVYSTC
Sbjct: 406 LLDAPCSGTGVIAKDQNVKVNRTEKDFIQIPHLQKQLLLSAIDSVDAHSATGGVIVYSTC 465
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V ENEAV+DYAL+KR +VKLV GL G+ GF +R +F+P + TRR+YPH +N+
Sbjct: 466 SVAVEENEAVVDYALRKRPNVKLVETGLAIGKPGFTSYRGKQFNPKVSLTRRYYPHAYNV 525
Query: 373 DGFFVAKLKKMSNSKK--TSAGPQPSE-TVEQQTPESNVSNGD-KKTEENSEQVLMKKAT 428
DGFFVAK +K+++S + AG + E + + + + +GD ++ +++ +MK++
Sbjct: 526 DGFFVAKFQKVASSPHDVSKAGAKEKEMAADAEAEKEGLIHGDFANFDDEADKEIMKESI 585
Query: 429 TKAKDLKKK 437
+LKKK
Sbjct: 586 K--HNLKKK 592
>gi|395333608|gb|EJF65985.1| NOL1/NOP2/sun family RNA met [Dichomitus squalens LYAD-421 SS1]
Length = 718
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/371 (63%), Positives = 288/371 (77%), Gaps = 8/371 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PD+ +QRR++E VRVL NF L+ KG SR EYVQQL D+ SYYGYN+FL L ++FP
Sbjct: 287 PDVHTVQRRMRECVRVLGNFNKLAAKGRSRSEYVQQLISDIASYYGYNDFLAEKLFQLFP 346
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
E +E E+ E PRP+ +RTNTL+TRRRDLA LINRGVNL+P+ KW+ VGL V++S V
Sbjct: 347 VAEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSV 406
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
PIGATPEY+AG YMLQ+ASSFLPV+AL+PQ ERV+DMA+APGGKTT++AALM+NTG+++
Sbjct: 407 PIGATPEYLAGHYMLQAASSFLPVIALSPQPGERVLDMASAPGGKTTHMAALMQNTGVVF 466
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R+KSLTAN+HR+G N +VC+YDG E PKV+G DRVLLDAPCSGTGVISK
Sbjct: 467 ANDANKARVKSLTANVHRLGCKNVVVCSYDGREFPKVIG--GFDRVLLDAPCSGTGVISK 524
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+KS D S+LQKQLIL AID V +SK+GGY+VYSTCS+ V ENEAV+DYA
Sbjct: 525 DASVKTNKSERDFALLSHLQKQLILCAIDSVAPDSKTGGYLVYSTCSVTVDENEAVVDYA 584
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK----- 381
L+KR +VKLV GL+FGR G+ +R F L TRRFYPHVHNMDGF+VAK K
Sbjct: 585 LRKRPNVKLVDTGLEFGRPGYTSYRGKTFSDKLSLTRRFYPHVHNMDGFYVAKFKVEKRA 644
Query: 382 KMSNSKKTSAG 392
K+ K +AG
Sbjct: 645 KVKGEKDEAAG 655
>gi|189190438|ref|XP_001931558.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973164|gb|EDU40663.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 739
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/430 (54%), Positives = 302/430 (70%), Gaps = 22/430 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQP------PDLPNLQRRIKEIVRVLSNFKDLSQKG 54
MQ NI E R E+ E+E +P D+ L+ R+ + +RVL +FK+L+++G
Sbjct: 195 MQTNIAGE----RPKILEDSEDEDGRPVTNLVTQDIQLLRTRLTDTIRVLDDFKNLAEEG 250
Query: 55 TSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTR 114
SR EY+ L D+ +YYGY+EFL L+ +FPP E E+ E PRPI +RTNTL+T
Sbjct: 251 RSRAEYMASLLKDVCAYYGYSEFLADKLLNLFPPREAQAFFEANETPRPIVIRTNTLRTH 310
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
RR+LA LINRGV L+P+ KWSKVGL ++D+QVP+GATPEY+AG Y+LQ+ASSFLPVMAL
Sbjct: 311 RRELAQTLINRGVQLEPVGKWSKVGLQIFDTQVPLGATPEYLAGHYILQAASSFLPVMAL 370
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
APQE ERV+DMAAAPGGKTT++AALMKNTG I+AN+ R K L N+HR+G N IV
Sbjct: 371 APQENERVLDMAAAPGGKTTHLAALMKNTGCIFANDANKDRAKGLIGNIHRLGARNVIVS 430
Query: 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294
+Y E P+V+G DRVLLDAPCSGTGVI+KD SVKT+K+ D K +LQKQL+LAA
Sbjct: 431 HYSALEFPRVMG--GFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLLLAA 488
Query: 295 IDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREH 353
ID V+ +SK+GGYIVYSTCS+ + ENE V+ YAL KR +VKLV GL FG++GF + +
Sbjct: 489 IDSVNHSSKTGGYIVYSTCSVTLEENEQVVQYALNKRPNVKLVETGLTFGKEGFTKIQGK 548
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVE-QQTPESNVSNGD 412
FHPS++ TRR+YPH +N+DGFFVAK KK+ GP P V + ++N + G
Sbjct: 549 IFHPSMKMTRRYYPHTYNVDGFFVAKFKKI--------GPTPPNAVGVNEATKTNGNGGA 600
Query: 413 KKTEENSEQV 422
K T E V
Sbjct: 601 KSTTTEIEVV 610
>gi|392566845|gb|EIW60020.1| NOL1/NOP2/sun family RNA met [Trametes versicolor FP-101664 SS1]
Length = 707
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/370 (62%), Positives = 288/370 (77%), Gaps = 4/370 (1%)
Query: 14 LPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYY 72
LPT EE++EEK++ PD+ +QRR++E VRVL NF+ + KG +R EYV L D+ SYY
Sbjct: 268 LPTAEELDEEKKRGGPDVHTVQRRMRECVRVLGNFRKYAAKGRARSEYVHTLMSDIASYY 327
Query: 73 GYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
GYN+FL L ++FP E +E E+ E PRP+ +RTNTL+TRRRDLA LINRGVNL+P+
Sbjct: 328 GYNDFLTEKLFQLFPVAEAIEFFEANEIPRPVTIRTNTLRTRRRDLAQALINRGVNLEPI 387
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+AL Q ERV+DMA+APGGK
Sbjct: 388 GKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALGSQPGERVLDMASAPGGK 447
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
TT++AALM+NTG+++AN+ +R KSLTAN+HR+G N +VC+YDG E PKV+G DR
Sbjct: 448 TTHMAALMQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVIG--GFDR 505
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
VLLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID V A+SK+GG++VYST
Sbjct: 506 VLLDAPCSGTGVISKDASVKQNKSERDFTLLSHLQKQLILCAIDSVQADSKTGGFLVYST 565
Query: 313 CSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
CS+ V ENEAV+DYAL+KR VKLV GL+FGR GF +R F L TRRFYPHVHN
Sbjct: 566 CSVTVDENEAVVDYALRKRPHVKLVDTGLEFGRPGFTSYRGKTFSDKLSLTRRFYPHVHN 625
Query: 372 MDGFFVAKLK 381
MDGF+VAK K
Sbjct: 626 MDGFYVAKFK 635
>gi|367019554|ref|XP_003659062.1| hypothetical protein MYCTH_2295642 [Myceliophthora thermophila ATCC
42464]
gi|347006329|gb|AEO53817.1| hypothetical protein MYCTH_2295642 [Myceliophthora thermophila ATCC
42464]
Length = 733
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/373 (59%), Positives = 275/373 (73%), Gaps = 11/373 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F +L+++G SR EY QL D +YYGYNEFL L+ +FP
Sbjct: 237 PDLQMLRTRITETIRVLEDFSNLAEEGRSRAEYTSQLLKDFCAYYGYNEFLAEKLMNLFP 296
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 297 PREAFAFFEANETARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSV 356
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ER +DMAAAPGGKTT++AALMKNTG+I+
Sbjct: 357 PLGATPEYLAGHYILQAASSFLPVMALCPQENERCLDMAAAPGGKTTHMAALMKNTGVIF 416
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ SR K L N+HR+G N IVCNYD E P+V+G DRVLLDAPCSGTGVISK
Sbjct: 417 ANDPNKSRAKGLIGNIHRLGARNVIVCNYDAREFPRVIG--GFDRVLLDAPCSGTGVISK 474
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT++ +D + + QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V+ YA
Sbjct: 475 DPSVKTNRDEKDFIQLPHTQKQLLLAAIDSTNHASKTGGYIVYSTCSVAVEENEQVVAYA 534
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +V+LV GL FG++GF + FHPSL+ TRRFYPH++N+DGFFVAK KK+
Sbjct: 535 LSRRPNVRLVETGLPFGKEGFTSYMGKSFHPSLKLTRRFYPHLYNVDGFFVAKFKKI--- 591
Query: 387 KKTSAGPQPSETV 399
GP P V
Sbjct: 592 -----GPTPPNAV 599
>gi|85119485|ref|XP_965642.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Neurospora crassa OR74A]
gi|28927454|gb|EAA36406.1| hypothetical protein NCU02511 [Neurospora crassa OR74A]
Length = 746
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/399 (55%), Positives = 288/399 (72%), Gaps = 11/399 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +R+L +F + +++G SR EY QL D+ +YYGYNE+L L +FP
Sbjct: 230 PDLQMLRTRITDAIRILDDFSNSAEEGKSRAEYTSQLIKDICAYYGYNEYLAEKLFNLFP 289
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V+DS V
Sbjct: 290 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNV 349
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ERV+DMA+APGGKTT++AALMKNTG+I+
Sbjct: 350 PLGATPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHMAALMKNTGVIF 409
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+HR+G N IVCNYD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 410 ANDPSKQRAKGLIGNIHRLGARNVIVCNYDAREFPRVMG--GFDRVLLDAPCSGTGVIAK 467
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT++ +D + +LQKQL+LAAID VD SK+GGY+VYSTCS+ V ENE V+ YA
Sbjct: 468 DPSVKTNRDEKDFLQLPHLQKQLLLAAIDSVDHASKTGGYVVYSTCSVAVEENEQVVAYA 527
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +VKLV GL FG++GF F FHPSL+ TRR+YPH++N+DGFFVAK +K+
Sbjct: 528 LSRRPNVKLVETGLAFGKEGFTSFMGKSFHPSLKLTRRYYPHLYNVDGFFVAKFQKL--- 584
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMK 425
GP P+ V + + D + + +++V+ K
Sbjct: 585 -----GPTPATAVRANGVDKSNKPLDGQASQEAQEVVDK 618
>gi|451854377|gb|EMD67670.1| hypothetical protein COCSADRAFT_34463 [Cochliobolus sativus ND90Pr]
Length = 728
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/425 (55%), Positives = 297/425 (69%), Gaps = 23/425 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQP------PDLPNLQRRIKEIVRVLSNFKDLSQKG 54
MQ NI E R E+ E+E +P D+ L+ R+ + +RVL +FK+L+++G
Sbjct: 196 MQTNIVGE----RPKILEDEEDEDGRPITNLVNQDIQLLRTRLTDTIRVLDDFKNLAEEG 251
Query: 55 TSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTR 114
SR EY L D+ +YYGY+EFL L+ +FPP E E+ E PRPI +RTNTL+T
Sbjct: 252 RSRAEYRASLLKDICAYYGYSEFLADKLLSLFPPREAQAFFEANETPRPIVIRTNTLRTH 311
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
RRDLA LINRGV L+P+ KWSKVGL ++D+QVP+GATPEY+AG Y+LQ+ASSFLPVMAL
Sbjct: 312 RRDLAQALINRGVQLEPVGKWSKVGLQIFDAQVPLGATPEYLAGHYILQAASSFLPVMAL 371
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
APQE ERV+DMAAAPGGKTT++AALMKNTG I+AN+ R K L N+HR+G N IV
Sbjct: 372 APQENERVLDMAAAPGGKTTHLAALMKNTGCIFANDANKDRAKGLIGNIHRLGARNVIVS 431
Query: 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294
+Y E P+V ++ DRVLLDAPCSGTGVI+KD SVKT+K+ D K +LQKQL+LAA
Sbjct: 432 HYSALEFPRV--MSGFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLLLAA 489
Query: 295 IDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREH 353
ID V+ +SK+GGYIVYSTCS+ V ENE V+ YAL KR +VKLV GL FG++GF R
Sbjct: 490 IDSVNHHSKTGGYIVYSTCSVTVEENEQVVQYALNKRPNVKLVETGLTFGKEGFTRIGGK 549
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETV--EQQTPESNVSNG 411
FHPS++ TRR+YPH +N+DGFFVAK KK+ GP P + + T + N
Sbjct: 550 TFHPSMKMTRRYYPHTYNVDGFFVAKFKKI--------GPTPPNAIGANEATKANGAGNS 601
Query: 412 DKKTE 416
D TE
Sbjct: 602 DTITE 606
>gi|350297026|gb|EGZ78003.1| NOL1/NOP2/sun family putative RNA met [Neurospora tetrasperma FGSC
2509]
Length = 746
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/399 (55%), Positives = 288/399 (72%), Gaps = 11/399 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +R+L +F + +++G SR EY QL D+ +YYGYNE+L L +FP
Sbjct: 230 PDLQMLRTRITDAIRILDDFSNSAEEGKSRAEYTSQLIKDICAYYGYNEYLAEKLFNLFP 289
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V+DS V
Sbjct: 290 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNV 349
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ERV+DMA+APGGKTT++AALMKNTG+I+
Sbjct: 350 PLGATPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHMAALMKNTGVIF 409
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+HR+G N IVCNYD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 410 ANDPSKQRAKGLIGNIHRLGARNVIVCNYDAREFPRVMG--GFDRVLLDAPCSGTGVIAK 467
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT++ +D + +LQKQL+LAAID VD SK+GGY+VYSTCS+ V ENE V+ YA
Sbjct: 468 DPSVKTNRDEKDFLQLPHLQKQLLLAAIDSVDHASKTGGYVVYSTCSVAVEENEQVVAYA 527
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +VKLV GL FG++GF F FHPSL+ TRR+YPH++N+DGFFVAK +K+
Sbjct: 528 LSRRPNVKLVETGLAFGKEGFTSFMGKSFHPSLKLTRRYYPHLYNVDGFFVAKFQKL--- 584
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMK 425
GP P+ V + + D + + +++V+ K
Sbjct: 585 -----GPTPATAVRANGVDKSNKPLDGEASQEAQEVVDK 618
>gi|336464921|gb|EGO53161.1| hypothetical protein NEUTE1DRAFT_150546 [Neurospora tetrasperma
FGSC 2508]
Length = 746
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/399 (55%), Positives = 288/399 (72%), Gaps = 11/399 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +R+L +F + +++G SR EY QL D+ +YYGYNE+L L +FP
Sbjct: 230 PDLQMLRTRITDAIRILDDFSNSAEEGKSRAEYTSQLIKDICAYYGYNEYLAEKLFNLFP 289
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V+DS V
Sbjct: 290 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNV 349
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ERV+DMA+APGGKTT++AALMKNTG+I+
Sbjct: 350 PLGATPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHMAALMKNTGVIF 409
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+HR+G N IVCNYD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 410 ANDPSKQRAKGLIGNIHRLGARNVIVCNYDAREFPRVMG--GFDRVLLDAPCSGTGVIAK 467
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT++ +D + +LQKQL+LAAID VD SK+GGY+VYSTCS+ V ENE V+ YA
Sbjct: 468 DPSVKTNRDEKDFLQLPHLQKQLLLAAIDSVDHASKTGGYVVYSTCSVAVEENEQVVAYA 527
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +VKLV GL FG++GF F FHPSL+ TRR+YPH++N+DGFFVAK +K+
Sbjct: 528 LSRRPNVKLVETGLAFGKEGFTSFMGKSFHPSLKLTRRYYPHLYNVDGFFVAKFQKL--- 584
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMK 425
GP P+ V + + D + + +++V+ K
Sbjct: 585 -----GPTPATAVRANGVDKSNKPLDGQASQEAQEVVDK 618
>gi|406863282|gb|EKD16330.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1016
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/386 (59%), Positives = 284/386 (73%), Gaps = 8/386 (2%)
Query: 8 ESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
ESDE P K E+ PDL L+ RI + VRVL +F +LS++G SR EY QL D
Sbjct: 211 ESDEEAGPKKNEL-----MAPDLQLLRTRINDTVRVLDDFSNLSEEGRSRAEYTAQLIKD 265
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
+ +YYGY+E+L L +FPP E E+ E RP+ +RTNTL+T RRDLA LINRGV
Sbjct: 266 ICAYYGYSEYLAEKLFNLFPPKEAFAFFEANETHRPVVIRTNTLRTHRRDLAQALINRGV 325
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
L+P+ KWSK+GL +++S VP+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMAA
Sbjct: 326 VLEPVGKWSKIGLQIFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMAA 385
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTT+IAALMKNTG I+AN+ SR K L N+HR+G NTIVCNYD E PKV+G
Sbjct: 386 APGGKTTHIAALMKNTGCIFANDSNKSRAKGLIGNIHRLGAKNTIVCNYDAREFPKVIG- 444
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
DRVLLDAPCSGTGVI+KD SVKT+K+ +D +LQKQL+LAAID VD SK+GGY
Sbjct: 445 -GFDRVLLDAPCSGTGVIAKDPSVKTNKTEKDFLMLPHLQKQLLLAAIDSVDHASKTGGY 503
Query: 308 IVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFY 366
IVYSTCS+ V ENE V+ YAL +R +VKLV GL FG++GF + F SL+ TRR+Y
Sbjct: 504 IVYSTCSVTVEENEGVVQYALSRRPNVKLVETGLVFGKEGFTAYMGKTFDKSLKMTRRYY 563
Query: 367 PHVHNMDGFFVAKLKKMSNSKKTSAG 392
PH +N+DGFFV+K KKM S K + G
Sbjct: 564 PHAYNVDGFFVSKFKKMRPSPKNATG 589
>gi|154303546|ref|XP_001552180.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Botryotinia fuckeliana
B05.10]
gi|347840919|emb|CCD55491.1| hypothetical protein [Botryotinia fuckeliana]
Length = 718
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/441 (53%), Positives = 299/441 (67%), Gaps = 13/441 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +RVL +F +LS++G SR EY QL D+ +YYGY+EFL L +FP
Sbjct: 232 PDLQLLRSRINDTIRVLDDFSNLSEEGRSRAEYTAQLIKDICAYYGYSEFLAEKLFNLFP 291
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL +++S V
Sbjct: 292 PKEAYAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVVLEPVGKWSKVGLQIFESAV 351
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMA+APGGKTT+IAALMKNTG I+
Sbjct: 352 PLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTHIAALMKNTGCIF 411
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ SR K L N+HR+G N IVCNYD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 412 ANDSNKSRAKGLIGNIHRLGAKNVIVCNYDAREFPRVIG--GFDRVLLDAPCSGTGVIAK 469
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D +LQKQL+L+AID VD SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 470 DASVKTNKTERDFLMLPHLQKQLLLSAIDSVDHASKTGGYIVYSTCSVTVEENEQVVQYV 529
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L KR +VKLV GL FG++GF + F +++ TRR+YPH +N+DGFFV+K KK S
Sbjct: 530 LNKRPNVKLVETGLAFGKEGFTSYMGKSFDKNMKMTRRYYPHAYNVDGFFVSKFKKTGPS 589
Query: 387 KKTSAGPQPSE----------TVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKK 436
K+ G + +E T ++T E G E+ V +K T K K +
Sbjct: 590 PKSKPGEKDAEKELDELDIDKTPIRETEEEEAFGGWDDGEDEEYMVKARKNTLKRKGIDP 649
Query: 437 KTSGLAENGNVESPSNEKRRK 457
K + VE +EK K
Sbjct: 650 KADKTKADTKVEETKDEKSAK 670
>gi|300121088|emb|CBK21470.2| unnamed protein product [Blastocystis hominis]
Length = 690
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/357 (60%), Positives = 277/357 (77%), Gaps = 2/357 (0%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DL ++ RI++IV +L++F+ SR+EY+ +L+ +YGYN L+ MF P
Sbjct: 129 DLDEMKERIQDIVTILADFRRRRDPNVSREEYMDRLRSYCARFYGYNPNLVEYFFYMFSP 188
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E +E ++ E RP+ +RTNTLKTRRRDLA VLINRG+NLDPL +WS++GL +YD+ VP
Sbjct: 189 QECVEWFDANESDRPLVIRTNTLKTRRRDLAQVLINRGINLDPLGEWSRLGLKIYDTPVP 248
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+AG YMLQSASS LPVMAL PQ ER++DM AAPGGKTT+IA LMKNTG++ A
Sbjct: 249 IGATPEYLAGHYMLQSASSMLPVMALNPQPNERILDMCAAPGGKTTHIAQLMKNTGVLVA 308
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N++K RL + ANLHR+GVTNTIV NY G + PKV+G DRVLLDAPC+G GVIS+D
Sbjct: 309 NDLKKERLIATVANLHRLGVTNTIVTNYHGCKFPKVMG--GFDRVLLDAPCTGLGVISRD 366
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
SVK S++++D+ + +++QK LILAAID +DANSKSGG +VYSTCS+ V ENEAV++YAL
Sbjct: 367 PSVKMSRTVKDMVQNAFVQKLLILAAIDSIDANSKSGGVLVYSTCSVSVYENEAVVNYAL 426
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+KR VKLV GL FG GF FR+ ++HPS+ TRR+YPHVHNMDGFFVAKL K+SN
Sbjct: 427 RKRHVKLVDTGLTFGTPGFTSFRQFKYHPSMSMTRRYYPHVHNMDGFFVAKLVKLSN 483
>gi|330915499|ref|XP_003297055.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Pyrenophora teres f. teres
0-1]
gi|311330482|gb|EFQ94850.1| hypothetical protein PTT_07336 [Pyrenophora teres f. teres 0-1]
Length = 745
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/430 (54%), Positives = 302/430 (70%), Gaps = 22/430 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQP------PDLPNLQRRIKEIVRVLSNFKDLSQKG 54
MQ NI E R E+ E+E +P D+ L+ R+ + +RVL +FK+L+++G
Sbjct: 195 MQTNIAGE----RPKILEDSEDEDGRPVTNLVTQDIQLLRTRLTDTIRVLDDFKNLAEEG 250
Query: 55 TSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTR 114
SR EY+ L D+ +YYGY+EFL L+ +FPP E E+ E PRPI +RTNTL+T
Sbjct: 251 RSRAEYMASLLKDVCAYYGYSEFLADKLLNLFPPREAQAFFEANETPRPIVIRTNTLRTH 310
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
RR+LA LINRGV L+P+ KWSKVGL ++D+QVP+GATPEY+AG Y+LQ+ASSFLPVMAL
Sbjct: 311 RRELAQTLINRGVQLEPVGKWSKVGLQIFDTQVPLGATPEYLAGHYILQAASSFLPVMAL 370
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
APQE ERV+DMAAAPGGKTT++AALMKNTG I+AN+ R K L N+HR+G N IV
Sbjct: 371 APQENERVLDMAAAPGGKTTHLAALMKNTGCIFANDANKDRAKGLIGNIHRLGARNVIVS 430
Query: 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294
+Y E P+V+G DRVLLDAPCSGTGVI+KD SVKT+K+ D K +LQKQL+LAA
Sbjct: 431 HYSALEFPRVMG--GFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLLLAA 488
Query: 295 IDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREH 353
ID V+ +SK+GGYIVYSTCS+ + ENE V+ YAL KR +VKLV GL FG++GF + +
Sbjct: 489 IDSVNHSSKTGGYIVYSTCSVTLEENEQVVQYALNKRPNVKLVETGLTFGKEGFTKIQGK 548
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVE-QQTPESNVSNGD 412
FHPS++ TRR+YPH +N+DGFFVAK KK+ GP P V + ++N + G
Sbjct: 549 IFHPSMKMTRRYYPHTYNVDGFFVAKFKKI--------GPTPPNAVGVNEATKTNGNGGG 600
Query: 413 KKTEENSEQV 422
K T E V
Sbjct: 601 KSTTTEIEVV 610
>gi|339253414|ref|XP_003371930.1| putative RNA methyltransferase NOL1 [Trichinella spiralis]
gi|316967738|gb|EFV52125.1| putative RNA methyltransferase NOL1 [Trichinella spiralis]
Length = 472
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/379 (60%), Positives = 285/379 (75%), Gaps = 9/379 (2%)
Query: 10 DEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTS---RKEYVQQLKL 66
DE L E +E+ D +L R+KEIV +L+ FKD+S S R YVQ+LK
Sbjct: 69 DETHLNMTESNSDEELNNSD--SLYDRVKEIVNMLNKFKDVSNTNASLKSRSYYVQKLKK 126
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
L S+YGYNEF++ L+ +F EL+E +++ E RP+ +R NTLK RR+DLA L +RG
Sbjct: 127 YLCSFYGYNEFIMEKLIHIFKINELLEFLQANESQRPLVIRCNTLKIRRKDLAQSLTSRG 186
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
VNL PL KWSKVGLVVY SQVPIGATPEYM GFY+LQ ASSF+PV+AL PQE E+++D+
Sbjct: 187 VNLQPLGKWSKVGLVVYGSQVPIGATPEYMCGFYILQGASSFMPVLALDPQEDEKILDLC 246
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
AAPGGK++YI+A+MKNTG++ AN++ R K++T+N HR+GV N +V DG ++L
Sbjct: 247 AAPGGKSSYISAMMKNTGILIANDVSRDRCKAITSNFHRLGVRNAMVTCLDGRHFKQIL- 305
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
DRVLLDAPCSG+GVISKD SVK SK+L DIQ+C+ LQK+LILAAID +DA S G
Sbjct: 306 ---FDRVLLDAPCSGSGVISKDVSVKVSKNLLDIQRCATLQKELILAAIDRLDARSPKGS 362
Query: 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFY 366
+VYSTCSI V ENEAVIDYAL+KR+VKLV GL FG +GFVRFRE+RFHP+++ RRFY
Sbjct: 363 ILVYSTCSIFVEENEAVIDYALRKRNVKLVDTGLPFGIEGFVRFREYRFHPTMKYCRRFY 422
Query: 367 PHVHNMDGFFVAKLKKMSN 385
PH HNMDGFFVAKLKK SN
Sbjct: 423 PHKHNMDGFFVAKLKKFSN 441
>gi|328850880|gb|EGG00040.1| hypothetical protein MELLADRAFT_45567 [Melampsora larici-populina
98AG31]
Length = 468
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/436 (54%), Positives = 302/436 (69%), Gaps = 12/436 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQK--GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEM 85
PDL L RI+E VRVL+N++ L K G SR + V Q D+ Y+GYNEFL L E+
Sbjct: 8 PDLRKLYIRIQESVRVLANWRALGSKAGGKSRIDLVTQTCSDICEYFGYNEFLASTLWEL 67
Query: 86 FPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145
F P E + E+ E RP+ +RTNTL+T RRDLA LINRGVNL+P+ KWSKVGL V++S
Sbjct: 68 FGPEEALAFFEANETARPVTIRTNTLRTNRRDLAQCLINRGVNLEPIGKWSKVGLQVFES 127
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
VPIGATPEY+AG YMLQ+ASSFLPV+ALAPQ ER +DM+AAPGGKTT+++A+M+NTG+
Sbjct: 128 SVPIGATPEYLAGQYMLQAASSFLPVIALAPQPNERCLDMSAAPGGKTTFMSAMMQNTGV 187
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
++AN+ +R KSL AN+ R+G N ++CN+D E PKV+G DRVLLDAPCSGTGVI
Sbjct: 188 LFANDASKNRCKSLMANVTRLGCHNVVICNHDAREFPKVMG--GFDRVLLDAPCSGTGVI 245
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
SKD SVK +KS +D+ S+LQKQLIL AID V +S GG++VYSTCS+ ENE+V+D
Sbjct: 246 SKDASVKVNKSEKDLLLLSHLQKQLILCAIDSVSPHSVKGGFLVYSTCSVTTEENESVVD 305
Query: 326 YALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
YAL+KR +VKLV GL FGR+GF FR FHPSL+ TRRFYPHVHN+DGFFVAKL+
Sbjct: 306 YALRKRPNVKLVESGLTFGREGFTNFRGKTFHPSLKLTRRFYPHVHNVDGFFVAKLRVFP 365
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGLAEN 444
K P++T E + +GD+ T S + K K S L
Sbjct: 366 KIK-------PAKTTPGDLEEGDAEDGDEPTPAQSTSIAFDDEDDKEIIAAAKRSQLKAR 418
Query: 445 GNVESPSNEKRRKKRK 460
G P+++ +++KRK
Sbjct: 419 GIKPLPAHDGKKEKRK 434
>gi|440634815|gb|ELR04734.1| hypothetical protein GMDG_06963 [Geomyces destructans 20631-21]
Length = 699
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/453 (52%), Positives = 310/453 (68%), Gaps = 17/453 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + VRVL +F +LS++G SR EY QL D+ +YYGY+EFL L +FP
Sbjct: 232 PDLQLLRSRINDTVRVLDDFANLSEEGRSRAEYTAQLLKDVCAYYGYSEFLAEKLFNLFP 291
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTN+L+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 292 PKEAFAFFEANETARPVVIRTNSLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESAV 351
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMA+APGGKTTYIAALMKNTG I+
Sbjct: 352 PLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYIAALMKNTGCIF 411
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+GV NTIVCNYD E PKV+G DRVLLDAPCSGTGVI+K
Sbjct: 412 ANDSNKARAKGLIGNIHRLGVKNTIVCNYDAREFPKVMG--GFDRVLLDAPCSGTGVIAK 469
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D +LQKQL+LAAID VD SK+GG+IVYSTCS+ V ENE+V+ YA
Sbjct: 470 DPSVKTNKTERDFLMLPHLQKQLLLAAIDSVDHASKTGGFIVYSTCSVTVEENESVVQYA 529
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L KR +V+LV GL FG++GF + F ++ TRR+YPH +N+DGFFVAK KK + +
Sbjct: 530 LSKRPNVRLVETGLTFGKEGFTAYMGKNFDAKMKITRRYYPHAYNVDGFFVAKFKKFALT 589
Query: 387 KKTSAG-PQPSETVEQQTPESNVS-------NGDKKTEENSE--QVLMKKATTKAKDLKK 436
G P++ + E +V G+ K E + E +V + KA+ +
Sbjct: 590 PGKGLGNAAPAKDQAAKNDELDVDKRPIELMGGEDKMEWDDEADRVFI----DKAQRARM 645
Query: 437 KTSGLAENGNVESPSNEKRRKKRKFPSREEISK 469
+ G+ NG ++ R +K+K +E +K
Sbjct: 646 RRKGIDPNGAAKNAEPAVREEKKKVNKSKENAK 678
>gi|170049385|ref|XP_001855854.1| proliferating-cell nucleolar antigen p120 [Culex quinquefasciatus]
gi|167871246|gb|EDS34629.1| proliferating-cell nucleolar antigen p120 [Culex quinquefasciatus]
Length = 794
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/368 (58%), Positives = 285/368 (77%), Gaps = 2/368 (0%)
Query: 19 EIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFL 78
E +E +Q ++ ++ RIKE++ VLS+F K SR EY++ L+ DL YY YNEF
Sbjct: 244 EFPDENEQVTNIQDVHMRIKEVIGVLSDFSVNRDKNRSRSEYMELLQKDLCLYYSYNEFF 303
Query: 79 IGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 138
+ L+++F P EL+E +E+ E RP+ +RTN+LKTRRRDLA LINRGVNLDP+ KWSK
Sbjct: 304 MQLLIKLFSPNELLEFLEASEVQRPLTIRTNSLKTRRRDLAQALINRGVNLDPIGKWSKE 363
Query: 139 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAA 198
GLVVY SQVP+GATPEY+AG YM+Q ASS LPVMALAP+E ER++DM AAPGGK+++IAA
Sbjct: 364 GLVVYSSQVPLGATPEYLAGHYMIQGASSMLPVMALAPEENERILDMCAAPGGKSSHIAA 423
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258
LM+NTG+++AN++ RL+++ N HR+G+ N IV + DG + + + DRVLLDAP
Sbjct: 424 LMRNTGVLFANDVNKDRLQAVVGNFHRLGIQNAIVTSEDGTKYRDI--MTGFDRVLLDAP 481
Query: 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318
C+G+GVISKD SVKT+K+ DIQ+C LQ++L+L AID + ANS++GGY+VYSTCSI+
Sbjct: 482 CTGSGVISKDPSVKTTKTEIDIQRCYNLQRKLLLTAIDCLSANSETGGYLVYSTCSILPQ 541
Query: 319 ENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
ENE VIDYAL+KR+VKLVP GLDFG +G V F ++HPS++ TRRFYPH NMDGFFVA
Sbjct: 542 ENEWVIDYALRKRNVKLVPTGLDFGAEGLVNFCGQKYHPSMKLTRRFYPHTFNMDGFFVA 601
Query: 379 KLKKMSNS 386
KL+K S++
Sbjct: 602 KLQKFSDA 609
>gi|224000816|ref|XP_002290080.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973502|gb|EED91832.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 494
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/429 (51%), Positives = 308/429 (71%), Gaps = 13/429 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQ--PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRK 58
M+ I +++ + LPT EEI E++ + PP L+ RI++++ VL++FK + G SR
Sbjct: 53 MRRTIAQQTSVYHLPTAEEIAEDENRVVPPS--ELRARIEDVLEVLADFKTRREPGRSRS 110
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
+Y+++L D+ +GY + L+ + MF P E +E +E+ +KPRP+ +R NTLK RR+DL
Sbjct: 111 DYIERLAQDMAELFGYLQELVDYFLSMFGPNECLEFLEASDKPRPLVVRVNTLKARRKDL 170
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
A L+ RGV LDPL+ WSKVGL +Y+S VPIGATPEY+AG YMLQSA+S PVMAL PQ
Sbjct: 171 AAALMKRGVRLDPLAPWSKVGLKIYESTVPIGATPEYLAGHYMLQSAASMCPVMALGPQP 230
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
+RV+DM+AAPGGKT+Y++ LMKN G++ AN++K R K+ ANLHR+GV N + C YDG
Sbjct: 231 GDRVLDMSAAPGGKTSYVSQLMKNKGVVIANDLKPERQKATVANLHRLGVRNVVTCVYDG 290
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
++ L N+ DR+LLDAPCSG GVIS+D SVK +++ D+Q+C++LQK+L+LAAID +
Sbjct: 291 RKIGNQL-RNSFDRILLDAPCSGLGVISRDPSVKVQRTIPDVQRCAHLQKELLLAAIDAL 349
Query: 299 DANS-KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
+A S K GG +VYSTCS+ V ENE V++Y L KRDVKLV GLDFG+ GF RF RFHP
Sbjct: 350 NAKSKKGGGCMVYSTCSVAVAENEEVVNYLLSKRDVKLVETGLDFGKPGFTRFEHKRFHP 409
Query: 358 SLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEE 417
SL TRRFYPHVHNMDGF+VAK++K+S+ KK E + E NV+ + +
Sbjct: 410 SLALTRRFYPHVHNMDGFYVAKIQKLSDKKK-------GEEDKNAVSEENVNEVEADGKN 462
Query: 418 NSEQVLMKK 426
+E+V+++K
Sbjct: 463 EAEEVILEK 471
>gi|328874823|gb|EGG23188.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
Length = 713
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/376 (57%), Positives = 281/376 (74%), Gaps = 3/376 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP+ E+IEEE+ DL + +RIK+I+ L NF +KG SR++Y+ +L+ DL +Y+G
Sbjct: 230 LPSGEKIEEEQVLGVDLQEVYQRIKDIINTLDNFSKERKKGMSREDYMTRLRDDLATYFG 289
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YN FLI +++F E +E +E+ E RP+ +RTNTLK RR+DLAD L RGV+L+P+
Sbjct: 290 YNTFLIEVFLKLFRVSECLEFLEANETQRPLTIRTNTLKARRKDLADALGGRGVHLEPI- 348
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
KWS VGL +YD+QV IGATPEY+AG Y+ QSASSFLPV+AL PQ ER++D+ A+PGGKT
Sbjct: 349 KWSPVGLTIYDTQVAIGATPEYLAGHYIQQSASSFLPVVALEPQPGERILDLCASPGGKT 408
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TY+AALMKNTG + AN++ R++SL AN+HR+GV NTIV N DG E PK +G DR
Sbjct: 409 TYVAALMKNTGTLVANDINEERMRSLVANIHRLGVKNTIVSNLDGREYPKTMG--GFDRC 466
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
L+DAPC G GVI+KD+ +K SKS D+ C +QK+LIL AID VDA S +GG IVYSTC
Sbjct: 467 LVDAPCVGLGVIAKDQQIKLSKSQRDVDLCVNMQKELILHAIDSVDAKSPTGGIIVYSTC 526
Query: 314 SIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMD 373
S+ V ENE V+DYAL+ RDV L+ G++FG QGF +R HRFHPS+ T+R+YPH HNMD
Sbjct: 527 SLTVEENEGVVDYALRNRDVILLDTGVEFGVQGFTAYRHHRFHPSVALTKRYYPHTHNMD 586
Query: 374 GFFVAKLKKMSNSKKT 389
GF+VAK KK+SN KT
Sbjct: 587 GFYVAKFKKISNEIKT 602
>gi|393245574|gb|EJD53084.1| NOL1/NOP2/sun family putative RNA met [Auricularia delicata
TFB-10046 SS5]
Length = 460
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 234/382 (61%), Positives = 292/382 (76%), Gaps = 13/382 (3%)
Query: 12 FRLPTKEE----IEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
F LP+ E+ I E+ Q+ + +R++ VLS+FK Q+G SR EYV+Q+ D
Sbjct: 14 FDLPSAEQRKAGIAEDPQE------VYKRMRSCAIVLSHFKKYGQEGRSRAEYVEQIIAD 67
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
+GSYYGYNEFL L +FP E +E E+ E PRP+ +RTNTL+TRRRDLA LINRGV
Sbjct: 68 IGSYYGYNEFLTEKLFHIFPVAEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGV 127
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
NL+P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+AL PQ ER++DMA+
Sbjct: 128 NLEPIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALGPQPNERILDMAS 187
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTTYI+AL++NTGL++AN+ +R KSLTAN+HR+G N +VCNYDG E PKV+G
Sbjct: 188 APGGKTTYISALLQNTGLVFANDANKARTKSLTANIHRLGCKNVVVCNYDGREFPKVMG- 246
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
DRVLLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID VDA+SK+GG
Sbjct: 247 -GFDRVLLDAPCSGTGVISKDASVKVNKSERDFTLLSHLQKQLILCAIDSVDAHSKTGGI 305
Query: 308 IVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFY 366
+VYSTCS+ V ENEAV+DYAL+KR +V+L+P GL+FG++G+ R+R F L TRRFY
Sbjct: 306 VVYSTCSVTVDENEAVVDYALRKRPNVRLLPTGLEFGKEGYTRYRGKVFSDKLNLTRRFY 365
Query: 367 PHVHNMDGFFVAKLKKMSNSKK 388
PHVHNMDGFFVAK K M SK+
Sbjct: 366 PHVHNMDGFFVAKFKVMPRSKQ 387
>gi|296423329|ref|XP_002841207.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Tuber melanosporum Mel28]
gi|295637442|emb|CAZ85398.1| unnamed protein product [Tuber melanosporum]
Length = 643
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/393 (56%), Positives = 291/393 (74%), Gaps = 4/393 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQ-QPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKE 59
MQ NI E L ++ +++ PD+ L+ RI + +RVL +F +L+++G SR +
Sbjct: 184 MQTNIAGEPKPHILGDPDDKDDQAALAAPDVTLLRTRITDTIRVLEDFPNLAEEGRSRAD 243
Query: 60 YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
Y +Q+ D+ +YYGY+EFL L +F P E E+ EK RP +RTNTLKT RR+LA
Sbjct: 244 YTEQILKDICAYYGYSEFLAEKLFHLFSPHEAFSFFEANEKERPHVIRTNTLKTGRRELA 303
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
LINRGV L+P+ KWSKVGL +++SQVP+GATPEY+AG Y+LQ+ASSFLPVMALAPQE
Sbjct: 304 QALINRGVTLEPVGKWSKVGLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQEN 363
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
ER++DMAAAPGGKTTYI+ALMKNTG ++AN+ +R K L N+HR+GV NTIVCNYD
Sbjct: 364 ERILDMAAAPGGKTTYISALMKNTGCVFANDSNRARTKGLIGNIHRLGVKNTIVCNYDAK 423
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
E PKV+G DRVLLDAPCSGTGVISKD SVKT+K+ +D +LQKQL+L AID VD
Sbjct: 424 EFPKVIG--GFDRVLLDAPCSGTGVISKDPSVKTNKNAKDFMLLPHLQKQLLLCAIDSVD 481
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPS 358
S +GGY+VYSTCS+ V ENE+V++YAL+KR +VKLV GL FGR+GF +R F+
Sbjct: 482 YASPTGGYLVYSTCSVTVEENESVVEYALRKRPNVKLVETGLTFGREGFTSYRGKTFNEK 541
Query: 359 LEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
++ RRFYPH++N+DGFFVAK KK+ +K +A
Sbjct: 542 MKWARRFYPHMYNVDGFFVAKFKKIGPTKVAAA 574
>gi|367000333|ref|XP_003684902.1| hypothetical protein TPHA_0C03150 [Tetrapisispora phaffii CBS 4417]
gi|357523199|emb|CCE62468.1| hypothetical protein TPHA_0C03150 [Tetrapisispora phaffii CBS 4417]
Length = 608
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/375 (60%), Positives = 295/375 (78%), Gaps = 3/375 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LP++ E+E QPP+L ++ RI EIV+VL +F++L+ +G SR EYV +L LD+ Y+G
Sbjct: 176 LPSERELELMADQPPNLTAVRTRILEIVKVLEDFRNLAAEGRSRTEYVDRLLLDICDYFG 235
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y+ FL L +F P E +E E+ E RPI +RTNTL+TRRRDLA L+N+GVNL P+
Sbjct: 236 YSPFLAEKLFNLFSPAEALEFFEANEIARPITIRTNTLRTRRRDLAQALVNKGVNLQPIG 295
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGAT EY+AG Y+LQ+ASSFLPV+AL PQ ERV+DMAAAPGGKT
Sbjct: 296 TWTKVGLQIFDSQVPIGATSEYLAGQYILQAASSFLPVVALDPQLNERVLDMAAAPGGKT 355
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+ALMKNTG ++AN+ +R KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 356 TYISALMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 413
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VDANSK+GG+IVYSTC
Sbjct: 414 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSKTGGFIVYSTC 473
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAV+DYAL+KR +V+LV GL G++GF FR +FHPS++ TRR+YPH +N+
Sbjct: 474 SVAVEEDEAVVDYALRKRPNVRLVDTGLAIGKEGFTSFRGKKFHPSVKLTRRYYPHTYNV 533
Query: 373 DGFFVAKLKKMSNSK 387
DGF+VAK +K++ S+
Sbjct: 534 DGFYVAKFQKIAPSR 548
>gi|320586046|gb|EFW98725.1| nucleolar RNA methyltransferase [Grosmannia clavigera kw1407]
Length = 722
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/410 (54%), Positives = 290/410 (70%), Gaps = 3/410 (0%)
Query: 25 QQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVE 84
Q PDL L+ RI E ++ L +F L K R +YV QL D+ SYYGY+E+L L
Sbjct: 215 QLAPDLQLLRNRIGETIQALEDFGRLGDKARPRADYVAQLVRDMCSYYGYSEYLADKLFR 274
Query: 85 MFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144
+FPP E E+ E PRP+ LRTNTLKT RR+LA LINRGV L+P+ +WSKVGL V++
Sbjct: 275 LFPPREAFAFFEANETPRPVVLRTNTLKTHRRELAQALINRGVTLEPVGRWSKVGLQVFE 334
Query: 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG 204
S VP+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMAAAPGGKTT++AALMKNTG
Sbjct: 335 SNVPLGATPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHMAALMKNTG 394
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
+++AN+ +R K L N+HR+G N IVCNYD + P+V+G DRVLLDAPCSGTGV
Sbjct: 395 VVFANDPSKARSKGLIGNIHRLGARNVIVCNYDARDFPRVIG--GFDRVLLDAPCSGTGV 452
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
I+KD SVKT+K+ +D + ++QKQL+LAAID V+ SK+GGY+VYSTCS+ V ENEAV+
Sbjct: 453 IAKDPSVKTNKTEKDFMQLPHVQKQLLLAAIDSVNHASKTGGYLVYSTCSVTVEENEAVV 512
Query: 325 DYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
YALK+R +V+LV GL FG++GF F P+L+ TRRFYPH N+DGFFVAKL+K
Sbjct: 513 AYALKRRPNVRLVETGLPFGKEGFTSIMGKTFDPTLKMTRRFYPHHQNVDGFFVAKLQKF 572
Query: 384 SNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKD 433
+ + + + S QT E+ G+ + ++ + + + A D
Sbjct: 573 APTPANAVRAEGSSASRSQTAETADHAGNTDNDNDNAPIAVTDDSDAATD 622
>gi|342180762|emb|CCC90238.1| putative nucleolar protein [Trypanosoma congolense IL3000]
Length = 568
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 213/361 (59%), Positives = 274/361 (75%), Gaps = 6/361 (1%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI E V VLSNFKD ++G +R +Y+Q L+ D+ YGYN+FL A++ +F P E +
Sbjct: 152 LKDRISEAVHVLSNFKDEREEGRTRDDYLQLLRTDIMELYGYNDFLTDAILLLFSPTEAI 211
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E +E+ EKPRP +R NT+K +RRDL L+ RG+N++PL KWSKVGL +++S VPI T
Sbjct: 212 EFLEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEPLEKWSKVGLQIFESNVPISGT 271
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQSA SFLPVMALAPQ +ERV+DMAAAPGGKTTYIA LMKNTG+I+AN++
Sbjct: 272 VEYLAGHYMLQSAVSFLPVMALAPQPQERVLDMAAAPGGKTTYIAQLMKNTGVIFANDIS 331
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
A R+KSL ANL R+GVTN+IV NYDG KV + DRVLLDAPC+GTG+IS+D+S+K
Sbjct: 332 APRIKSLNANLQRLGVTNSIVTNYDGVGYEKV--MRNFDRVLLDAPCTGTGIISRDKSIK 389
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
TSK ED+Q+ S LQ+ L+L+AID + + GGY+VYSTCS +V ENEAV+D+AL +RD
Sbjct: 390 TSKQYEDVQRASQLQRALLLSAIDAL----RVGGYLVYSTCSFLVEENEAVVDFALHRRD 445
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAG 392
V +V GL FGR G ++R HRF+ L+ RR +PHVHNMDGFFV KLKK+SN +
Sbjct: 446 VTIVETGLPFGRPGLAKYRHHRFNDKLQHARRLFPHVHNMDGFFVCKLKKLSNEASGAKA 505
Query: 393 P 393
P
Sbjct: 506 P 506
>gi|413938658|gb|AFW73209.1| hypothetical protein ZEAMMB73_133498, partial [Zea mays]
Length = 275
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/275 (78%), Positives = 240/275 (87%)
Query: 85 MFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144
MFP VEL+EL+E+FEK P CLRTNTLKTRRRDLA LI RG NLDP+ KWSKVGLVVYD
Sbjct: 1 MFPAVELVELLEAFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYD 60
Query: 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG 204
S + GAT EYMAG YM Q ASSFLPVMALAPQEKER++DMAAAPGGKTTYI ALMKNTG
Sbjct: 61 STISAGATTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTG 120
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
+IYANE RL L N+HRMGVTNTIVCNYDG ELPKVLG+N+VDRVLLDAPC+GTG
Sbjct: 121 IIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSVDRVLLDAPCTGTGT 180
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
I KD +KTSK +EDI+ C+++QKQL+LAAID+VDANSK+GGYIVYSTCSIM+ ENEAVI
Sbjct: 181 IWKDLQIKTSKDIEDIRSCAFVQKQLLLAAIDLVDANSKTGGYIVYSTCSIMIPENEAVI 240
Query: 325 DYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
DYALKKR+VKLVPCGLDFGR GF+R+REHRFH SL
Sbjct: 241 DYALKKRNVKLVPCGLDFGRPGFIRYREHRFHTSL 275
>gi|254576911|ref|XP_002494442.1| ZYRO0A01562p [Zygosaccharomyces rouxii]
gi|238937331|emb|CAR25509.1| ZYRO0A01562p [Zygosaccharomyces rouxii]
Length = 617
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/437 (54%), Positives = 318/437 (72%), Gaps = 16/437 (3%)
Query: 6 REESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK 65
RE+ LPT+EE E E QQ PDL ++ R+ EIV+VL +FK+L+ +G SR EYV +L
Sbjct: 174 REQPKANVLPTEEEEEMEAQQQPDLTTVRTRMIEIVKVLDDFKNLAAEGRSRTEYVDRLI 233
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
D+ Y+GY+ FL L ++F P E +E E+ E RPI +RTNTL+TRRRDLA L+NR
Sbjct: 234 KDICQYFGYSPFLAEKLFQLFSPAEALEFFEANEISRPITIRTNTLRTRRRDLAQALVNR 293
Query: 126 GVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185
GVNL P+ W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL PQE ER++DM
Sbjct: 294 GVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGNYILQAASSFLPVIALDPQENERILDM 353
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
AAAPGGKTTYI+ALMKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E P+V+
Sbjct: 354 AAAPGGKTTYISALMKNTGCVFANDANKSRTKSLVANIHRLGCTNTIVCNYDAREFPRVI 413
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
G DR+LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD++SK+G
Sbjct: 414 G--GFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFMQIPHLQKQLLLSAIDSVDSHSKTG 471
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
G IVYSTCS+ V E+E V+DYAL+KR ++KL+ GL G++GF +R +FHPSL+ TRR
Sbjct: 472 GIIVYSTCSVAVEEDEQVVDYALRKRPNIKLIETGLAIGKEGFASYRGKKFHPSLKLTRR 531
Query: 365 FYPHVHNMDGFFVAKLKKMS--------NSKKTSAGPQPSETVEQQTPESNVSN-----G 411
+YPH +N+DGFFVAK +K+ NS K E VE+ S+ ++
Sbjct: 532 YYPHTYNVDGFFVAKFQKLGPSPHDDNQNSAKEKEAAAVKEAVEEGIIHSDFASFDNEED 591
Query: 412 DKKTEENSEQVLMKKAT 428
DK +++ +Q L+K+
Sbjct: 592 DKYIQKSQKQNLLKRGV 608
>gi|340897380|gb|EGS16970.1| RNA methyltransferase nop2-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 751
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/373 (60%), Positives = 281/373 (75%), Gaps = 11/373 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +RVL +F++L+++G SR EY QL D+ +YYGYNE+L L+ +FP
Sbjct: 230 PDLQMLRTRITDTIRVLEDFQNLAEEGRSRAEYTNQLLKDICAYYGYNEYLAEKLLNLFP 289
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V+DS+V
Sbjct: 290 PREAFAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSKV 349
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ER +DMAAAPGGKTT++AALMKNTG+I+
Sbjct: 350 PLGATPEYLAGHYILQAASSFLPVMALCPQENERCLDMAAAPGGKTTHMAALMKNTGVIF 409
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ SR K L N+HR+GV NTIVCNYD E P+V+G DRVLLDAPCSGTGVI K
Sbjct: 410 ANDPSKSRAKGLIGNIHRLGVRNTIVCNYDAREFPRVIG--GFDRVLLDAPCSGTGVICK 467
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT++ +D + + QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V++YA
Sbjct: 468 DPSVKTNRDAKDFMQLPHTQKQLLLAAIDSCNHASKTGGYIVYSTCSVCVEENEEVVNYA 527
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +VKLV GL FG++GF + FHPSL+ TRRFYPH++N+DGFFVAK KK+
Sbjct: 528 LSRRPNVKLVETGLPFGKEGFTSYMGKTFHPSLKLTRRFYPHLYNVDGFFVAKFKKI--- 584
Query: 387 KKTSAGPQPSETV 399
GP P V
Sbjct: 585 -----GPTPPNAV 592
>gi|156063948|ref|XP_001597896.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Sclerotinia sclerotiorum 1980
UF-70]
gi|154697426|gb|EDN97164.1| hypothetical protein SS1G_02092 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 713
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/366 (59%), Positives = 272/366 (74%), Gaps = 3/366 (0%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +RVL +F +LS++G SR EY QL D+ +YYGY+ FL L +FP
Sbjct: 233 PDLQLLRSRINDTIRVLDDFSNLSEEGRSRAEYTAQLIKDICAYYGYSGFLAEKLFNLFP 292
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL +++S V
Sbjct: 293 PKEAFAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVVLEPVGKWSKVGLQIFESAV 352
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMA+APGGKTT+IAALMKNTG I+
Sbjct: 353 PLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTHIAALMKNTGCIF 412
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ SR K L N+HR+G N IVCNYD E PKV+G DRVLLDAPCSGTGVI+K
Sbjct: 413 ANDSNKSRAKGLIGNIHRLGAKNVIVCNYDAREFPKVIG--GFDRVLLDAPCSGTGVIAK 470
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D +LQKQL+L+AID VD SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 471 DASVKTNKTERDFLMLPHLQKQLLLSAIDSVDHASKTGGYIVYSTCSVTVEENEQVVQYV 530
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L KR +VKLV GL FG++GF + F +++ TRR+YPH +N+DGFFV+K KK S
Sbjct: 531 LNKRPNVKLVETGLAFGKEGFTSYMGKSFDKNMKMTRRYYPHAYNVDGFFVSKFKKTGPS 590
Query: 387 KKTSAG 392
K+ G
Sbjct: 591 PKSRPG 596
>gi|361128689|gb|EHL00619.1| putative ribosomal RNA methyltransferase Nop2 [Glarea lozoyensis
74030]
Length = 727
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/356 (60%), Positives = 271/356 (76%), Gaps = 3/356 (0%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + VRVL + +L+++G SR EY QL D+ +YYGY+++L L +FP
Sbjct: 224 PDLQLLRTRINDTVRVLDDMANLAEEGRSRAEYTAQLIKDICAYYGYSQYLAEKLFNLFP 283
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSK+GL V++S V
Sbjct: 284 PKEAFAFFEANETARPVVIRTNTLRTHRRDLATSLINRGVTLEPVGKWSKIGLQVFESAV 343
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMAAAPGGKTT++AALMKNTG+I+
Sbjct: 344 PLGATPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHLAALMKNTGVIF 403
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ SR K L N+HR+G NTIVCNYD E PKV+G DRVLLDAPCSGTGVI+K
Sbjct: 404 ANDSNKSRAKGLIGNIHRLGAKNTIVCNYDAREFPKVMG--GFDRVLLDAPCSGTGVIAK 461
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ +D +LQKQL+L+AID VD SK+GGYIVYSTCS+ V ENE V+ YA
Sbjct: 462 DPSVKTNKTEKDFLMLPHLQKQLLLSAIDSVDHASKTGGYIVYSTCSVTVEENEQVVQYA 521
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
L KR +VKLV GL FG++GF + F SL+ TRR+YPH +N+DGFFV+K KK
Sbjct: 522 LSKRPNVKLVETGLVFGKEGFTSYMGKSFDKSLKMTRRYYPHAYNVDGFFVSKFKK 577
>gi|321252144|ref|XP_003192304.1| nucleolar RNA m(5)C methyltransferase; Nop2p [Cryptococcus gattii
WM276]
gi|317458772|gb|ADV20517.1| Nucleolar RNA m(5)C methyltransferase, putative; Nop2p
[Cryptococcus gattii WM276]
Length = 696
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/366 (60%), Positives = 276/366 (75%), Gaps = 6/366 (1%)
Query: 30 LPNLQRRIKEIVRVLSNFKDLSQKGT---SRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
L ++ R++ +V V+ N ++ KG SR +++ QL+ D+ +Y+GYN FL+G L+++F
Sbjct: 264 LREVENRMRWLVGVVLNKEEKVSKGVPGKSRSDHMLQLQHDIATYFGYNTFLVGKLMKLF 323
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
E + ES E PRP+ +R NTL+TRRRDLA LINRGV L+P+ KWSKVGL V++S
Sbjct: 324 AADEALAFFESNESPRPVTIRANTLRTRRRDLAQALINRGVTLEPIGKWSKVGLQVFESP 383
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG YMLQ+ASSFLPV+ALAPQ ERV+DMA+APGGKTTYI+AL++NTG++
Sbjct: 384 VPIGATPEYLAGHYMLQAASSFLPVIALAPQPNERVLDMASAPGGKTTYISALLQNTGIV 443
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
+AN+ +R KSLTAN+HRMG N +VCNYD E PKV+G DRVLLDAPCSGTGVIS
Sbjct: 444 FANDSNKARTKSLTANVHRMGCKNVVVCNYDAREFPKVMG--GFDRVLLDAPCSGTGVIS 501
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVK +K+ D Q ++LQKQLIL AID V+ NS +GGY+VYSTCS+ V ENE+V+DY
Sbjct: 502 KDASVKVNKTERDFQLLAHLQKQLILCAIDSVNPNSSTGGYLVYSTCSVTVDENESVVDY 561
Query: 327 ALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
AL+KR +VKLV GLDFG GF F FH S+ TRRFYPH HNMDGFFVAK K
Sbjct: 562 ALRKRPNVKLVETGLDFGVHGFKSFEGKNFHSSVSLTRRFYPHKHNMDGFFVAKFKVEPR 621
Query: 386 SKKTSA 391
K T A
Sbjct: 622 KKLTKA 627
>gi|393220344|gb|EJD05830.1| NOL1/NOP2/sun family RNA met [Fomitiporia mediterranea MF3/22]
Length = 420
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/347 (64%), Positives = 271/347 (78%), Gaps = 4/347 (1%)
Query: 37 IKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIE 96
++ RVLSNFK L+ K SR EYV+QL D+ SYYGYN+FL L +FP +E +E E
Sbjct: 1 MRHCARVLSNFKRLAAKDRSRSEYVEQLLADIASYYGYNDFLTEKLFHLFPVLEAIEFFE 60
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
S E PRP+ +RTNTL+TRR+DLA LI RGV+L+PL KWS VGL V++S VP+GATPEY+
Sbjct: 61 SNELPRPVTIRTNTLRTRRKDLAQALIARGVSLEPLGKWSPVGLQVFESSVPLGATPEYL 120
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
AG YMLQ+ASSFLPVMAL PQ ER++DMA+APGGK++YI+ALM+NTG+++AN+ SR
Sbjct: 121 AGHYMLQAASSFLPVMALDPQPNERILDMASAPGGKSSYISALMQNTGVVFANDANKSRT 180
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
KSLTAN+HR+G N +VCNYDG E PKV+G +RVLLDAPCSGTGVISKD SVK +KS
Sbjct: 181 KSLTANIHRLGCKNVVVCNYDGREFPKVIG--GFERVLLDAPCSGTGVISKDASVKVNKS 238
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYSTCSIMVTENEAVIDYALKKR-DVK 334
D S+LQKQLIL AID V A+S S G +VYSTCS+ V ENEAV+DYAL+KR V+
Sbjct: 239 ARDFALLSHLQKQLILCAIDSVTASSSSSPGIVVYSTCSVTVDENEAVVDYALRKRPHVQ 298
Query: 335 LVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
L+ GL FGR GF R+R F PS++ TRRFYPHVHNMDGFFVAKLK
Sbjct: 299 LLETGLAFGRDGFTRYRGKVFDPSVKLTRRFYPHVHNMDGFFVAKLK 345
>gi|157128943|ref|XP_001661560.1| ribosomal RNA small subunit methyltransferase b (sun) [Aedes
aegypti]
gi|108872435|gb|EAT36660.1| AAEL011282-PA [Aedes aegypti]
Length = 812
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 211/377 (55%), Positives = 287/377 (76%), Gaps = 6/377 (1%)
Query: 10 DEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
++F+ P ++++ P +L ++ RIKE++ VL++F SR EY++ L DL
Sbjct: 250 EKFQFPE----QDDQSAPTNLQDIHMRIKEVIGVLADFSVNRDPNRSRSEYMELLCKDLC 305
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
YY YNEF + L+++F P EL+E +E+ E RP+ +RTN+LKTRRRDLA LINRGVNL
Sbjct: 306 IYYSYNEFFMQLLLKLFSPNELLEFLEASEVQRPLTIRTNSLKTRRRDLAQALINRGVNL 365
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
DP+ KWSK GLVVY SQVP+GATPEY+AG YM+Q ASS LPV+AL P+E ER++D+ AAP
Sbjct: 366 DPIGKWSKEGLVVYTSQVPLGATPEYLAGHYMIQGASSMLPVIALGPEENERILDLCAAP 425
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGK+++IAALMKNTG+++AN++ RL+++ N HR+G+ N IV + DG + V +
Sbjct: 426 GGKSSHIAALMKNTGVLFANDVNKDRLQAVVGNFHRLGIQNAIVTSIDGTKYRDV--MTG 483
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPC+G+GVISKD SVKT+K+ DIQ+C LQ++L+L AID + ANS++GGY+V
Sbjct: 484 FDRVLLDAPCTGSGVISKDPSVKTTKTDVDIQRCYNLQRKLLLTAIDCLSANSETGGYLV 543
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTCSI+ ENE V+DYAL+KR+V+LV GLDFG +GFV F ++HPS++ TRRFYPH
Sbjct: 544 YSTCSILPQENEWVVDYALRKRNVRLVSTGLDFGNEGFVNFAGQKYHPSMKLTRRFYPHT 603
Query: 370 HNMDGFFVAKLKKMSNS 386
NMDGFFVAKL+K S++
Sbjct: 604 FNMDGFFVAKLQKFSDA 620
>gi|343428144|emb|CBQ71674.1| probable NOP2-nucleolar protein [Sporisorium reilianum SRZ2]
Length = 666
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/372 (60%), Positives = 280/372 (75%), Gaps = 3/372 (0%)
Query: 11 EFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGS 70
EF LPT EE E EK + DL + RI+EIV VLSNFK L+ G SR EYV+QL D+ +
Sbjct: 234 EFMLPTLEEREAEKTRGADLQLVHMRIQEIVTVLSNFKKLAVDGRSRSEYVEQLLADICT 293
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
YYGYN FL L E+F P E +E E+ E PRP+ +R NTL+TRRRDLA LINRGVNL+
Sbjct: 294 YYGYNAFLAEKLFELFTPAEAIEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVNLE 353
Query: 131 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPG 190
P+ WSKVGL V++S VP+GATPEY+AG YMLQ+ASSFLP +ALAPQ ERV+DMA+APG
Sbjct: 354 PIGAWSKVGLQVFESSVPVGATPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASAPG 413
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
GK+TY++ALM+NTG ++AN+ +R+KSL AN+HR+G N +VCNYDG + PKV+G
Sbjct: 414 GKSTYLSALMQNTGTVFANDSNKNRIKSLVANIHRLGCKNVVVCNYDGRQFPKVIG--GF 471
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
DRVLLD+PCSGTGVI KD+SVK +KS D ++LQKQL+L AID V+ S +GGY+VY
Sbjct: 472 DRVLLDSPCSGTGVIHKDQSVKVNKSERDFALLTHLQKQLLLCAIDSVNPRSSTGGYVVY 531
Query: 311 STCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STCS+MV ENE V+ YAL+KR +VK+V G+ FGR GF F +F + RR +PHV
Sbjct: 532 STCSVMVEENEEVVQYALRKRSNVKIVDTGIQFGRDGFKSFGRAKFDERMVYARRIFPHV 591
Query: 370 HNMDGFFVAKLK 381
HN+DGFFV KLK
Sbjct: 592 HNLDGFFVCKLK 603
>gi|405118456|gb|AFR93230.1| nucleolar protein [Cryptococcus neoformans var. grubii H99]
Length = 695
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/366 (60%), Positives = 276/366 (75%), Gaps = 6/366 (1%)
Query: 30 LPNLQRRIKEIVRVLSNFKDLSQKGT---SRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
L ++ R++ +V V+ N ++ KG SR +++ QL+ D+ +Y+GYN FL+G L+++F
Sbjct: 263 LREVENRMRWLVGVVLNKEEKVSKGVPGKSRSDHMLQLQHDIATYFGYNTFLVGKLMKLF 322
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
E + ES E PRP+ +R NTL+TRRRDLA LINRGV L+P+ KWSKVGL V++S
Sbjct: 323 AADEALAFFESNESPRPVTIRANTLRTRRRDLAQALINRGVTLEPIGKWSKVGLQVFESP 382
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG YMLQ+ASSFLPV+ALAPQ ERV+DMA+APGGKTTYI+AL++NTG++
Sbjct: 383 VPIGATPEYLAGHYMLQAASSFLPVIALAPQPNERVLDMASAPGGKTTYISALLQNTGIV 442
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
+AN+ +R KSLTAN+HRMG N +VCNYD E PKV+G DRVLLDAPCSGTGVIS
Sbjct: 443 FANDSNKARTKSLTANVHRMGCKNVVVCNYDAREFPKVMG--GFDRVLLDAPCSGTGVIS 500
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVK +K+ D Q ++LQKQLIL AID V+ NS +GGY+VYSTCS+ V ENE+V+DY
Sbjct: 501 KDASVKVNKTERDFQLLAHLQKQLILCAIDSVNPNSSTGGYVVYSTCSVTVDENESVVDY 560
Query: 327 ALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
AL+KR +VKLV GLDFG GF F FH S+ TRRFYPH HNMDGFFVAK K
Sbjct: 561 ALRKRPNVKLVETGLDFGVHGFKSFEGKNFHSSVSLTRRFYPHKHNMDGFFVAKFKVEPR 620
Query: 386 SKKTSA 391
K T A
Sbjct: 621 KKLTKA 626
>gi|58263482|ref|XP_569151.1| nucleolus protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134108332|ref|XP_777117.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259802|gb|EAL22470.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223801|gb|AAW41844.1| nucleolus protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 695
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/366 (60%), Positives = 276/366 (75%), Gaps = 6/366 (1%)
Query: 30 LPNLQRRIKEIVRVLSNFKDLSQKGT---SRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
L ++ R++ +V V+ N ++ KG SR +++ QL+ D+ +Y+GYN FL+G L+++F
Sbjct: 263 LREVENRMRWLVGVVLNKEEKVSKGVPGKSRSDHMLQLQHDIATYFGYNTFLVGKLMKLF 322
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
E + ES E PRP+ +R NTL+TRRRDLA LINRGV L+P+ KWSKVGL V++S
Sbjct: 323 AADEALAFFESNESPRPVTIRANTLRTRRRDLAQALINRGVTLEPIGKWSKVGLQVFESP 382
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG YMLQ+ASSFLPV+ALAPQ ERV+DMA+APGGKTTYI+AL++NTG++
Sbjct: 383 VPIGATPEYLAGHYMLQAASSFLPVIALAPQPNERVLDMASAPGGKTTYISALLQNTGIV 442
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
+AN+ +R KSLTAN+HRMG N +VCNYD E PKV+G DRVLLDAPCSGTGVIS
Sbjct: 443 FANDSNKARTKSLTANVHRMGCKNVVVCNYDAREFPKVMG--GFDRVLLDAPCSGTGVIS 500
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVK +K+ D Q ++LQKQLIL AID V+ NS +GGY+VYSTCS+ V ENE+V+DY
Sbjct: 501 KDASVKVNKTERDFQLLAHLQKQLILCAIDSVNPNSSTGGYVVYSTCSVTVDENESVVDY 560
Query: 327 ALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
AL+KR +VKLV GLDFG GF F FH S+ TRRFYPH HNMDGFFVAK K
Sbjct: 561 ALRKRPNVKLVETGLDFGVHGFKSFEGKNFHSSVSLTRRFYPHKHNMDGFFVAKFKVEPR 620
Query: 386 SKKTSA 391
K T A
Sbjct: 621 KKLTKA 626
>gi|158292802|ref|XP_314123.4| AGAP005221-PA [Anopheles gambiae str. PEST]
gi|157017164|gb|EAA44543.4| AGAP005221-PA [Anopheles gambiae str. PEST]
Length = 824
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 212/377 (56%), Positives = 281/377 (74%), Gaps = 6/377 (1%)
Query: 10 DEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
+ F PT+EE+ Q L ++ RIK++V VLS+F SR EY+ L+ DL
Sbjct: 279 ERFAFPTEEELA----QTTSLQDVNMRIKDVVGVLSDFAANRDPNRSRCEYIDLLRRDLC 334
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
YY YN+F +G L+E+F P EL+E +E+ E RP+ +RTN+LKTRRRDLA LINRG+NL
Sbjct: 335 LYYSYNDFFMGLLMEIFSPNELLEFLEASEIQRPVTIRTNSLKTRRRDLAQALINRGINL 394
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
DP+ KWSK GLVVY SQVP+GATPEY+AG YMLQ SS LPVMALAP+E ER++DM AAP
Sbjct: 395 DPIGKWSKEGLVVYTSQVPLGATPEYLAGHYMLQGGSSMLPVMALAPEENERILDMCAAP 454
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGK+++IAALMKNTG+++ N+ RL ++ N HR+G+ N ++ DG + + +
Sbjct: 455 GGKSSHIAALMKNTGVLFVNDANKERLHAVLGNFHRLGIQNAVITCMDGVKYGNI--MKG 512
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPC+G+GVISKD SVK +K+ D+Q+C LQ++L+L AID + A+S +GGY+V
Sbjct: 513 FDRVLLDAPCTGSGVISKDPSVKATKNEIDVQRCFNLQRRLLLTAIDCLSASSPTGGYLV 572
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTCSI+ ENE VID+ALK+R+V+LVP GLDFG +G F HRFHP+++ TRRFYPH
Sbjct: 573 YSTCSILPQENEWVIDFALKRRNVRLVPTGLDFGVEGMTNFGAHRFHPTMKLTRRFYPHT 632
Query: 370 HNMDGFFVAKLKKMSNS 386
HN+DGFFVAKL+K S++
Sbjct: 633 HNLDGFFVAKLQKFSDA 649
>gi|443899077|dbj|GAC76408.1| tRNA and rRNA cytosine-C5-methylase [Pseudozyma antarctica T-34]
Length = 657
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/372 (60%), Positives = 280/372 (75%), Gaps = 3/372 (0%)
Query: 11 EFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGS 70
EF LPT EE E EK + DL + RI+EIV VLSNFK L+ G SR EYV+QL D+ +
Sbjct: 240 EFMLPTLEEREAEKMRGADLQLVHMRIQEIVTVLSNFKKLAVDGRSRSEYVEQLLSDICT 299
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
YYGYN FL L E+F P E +E E+ E PRP+ +R NTL+TRRRDLA LINRGVNL+
Sbjct: 300 YYGYNAFLAEKLFELFTPAEAIEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVNLE 359
Query: 131 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPG 190
P+ WSKVGL V++S VPIGATPEY+AG YMLQ+ASSFLP +ALAPQ ERV+DMA+APG
Sbjct: 360 PIGAWSKVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASAPG 419
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
GK+TY++ALM+NTG ++AN+ +R+KSL AN+HR+G N +VCNYDG + PKV+G
Sbjct: 420 GKSTYLSALMQNTGTVFANDSNKNRIKSLVANIHRLGCKNVVVCNYDGRQFPKVIG--GF 477
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
DRVLLD+PCSGTGVI KD+SVK +KS D ++LQKQL+L AID V+ S +GGY+VY
Sbjct: 478 DRVLLDSPCSGTGVIHKDQSVKVNKSERDFALLTHLQKQLLLCAIDSVNPRSSTGGYVVY 537
Query: 311 STCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STCS+MV ENE V+ YAL+KR +VK+V G+ FGR GF F +F + RR +PHV
Sbjct: 538 STCSVMVEENEEVVQYALRKRANVKIVDTGIKFGRDGFKAFGRSKFDDRMPLARRIFPHV 597
Query: 370 HNMDGFFVAKLK 381
HN+DGFF+ KLK
Sbjct: 598 HNLDGFFLCKLK 609
>gi|388852682|emb|CCF53600.1| probable NOP2-nucleolar protein [Ustilago hordei]
Length = 681
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/383 (58%), Positives = 283/383 (73%), Gaps = 3/383 (0%)
Query: 11 EFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGS 70
EF LPT EE + EK + DL + RI+EIV VLSNFK L+ G SR EYV+QL D+ +
Sbjct: 245 EFMLPTLEERQAEKMRGADLQLVHMRIQEIVTVLSNFKKLAVDGRSRSEYVEQLLADICT 304
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
YYGYN FL L E+F P E +E E+ E PRP+ +R NTL+TRRRDLA LINRGVNL+
Sbjct: 305 YYGYNAFLAEKLFELFTPAEAIEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVNLE 364
Query: 131 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPG 190
PL WSKVGL V++S VP+GATPEY+AG YMLQ+ASSFLP +ALAPQ ERV+DMA+APG
Sbjct: 365 PLGAWSKVGLQVFESSVPVGATPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASAPG 424
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
GK+TY++ALM+NTG ++AN+ +R+KSL AN+HR+G N +VCNYDG + PKV+G
Sbjct: 425 GKSTYLSALMQNTGTVFANDSNKNRIKSLVANIHRLGCKNVVVCNYDGRQFPKVIG--GF 482
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
DRVLLD+PCSGTGVI KD+SVK +KS D ++LQKQL+L AID V+ S +GGY+VY
Sbjct: 483 DRVLLDSPCSGTGVIHKDQSVKVNKSERDFALLTHLQKQLLLCAIDSVNPRSSTGGYVVY 542
Query: 311 STCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STCS+MV ENE V+ YAL+KR +VK+V G+ FG+ GF F +F + RR +PHV
Sbjct: 543 STCSVMVEENEEVVQYALRKRSNVKIVDTGIQFGKDGFKSFGRSKFDERMTYARRIFPHV 602
Query: 370 HNMDGFFVAKLKKMSNSKKTSAG 392
HN+DGFFV KLK +AG
Sbjct: 603 HNLDGFFVCKLKVNPPCNNNNAG 625
>gi|71005896|ref|XP_757614.1| hypothetical protein UM01467.1 [Ustilago maydis 521]
gi|46097107|gb|EAK82340.1| hypothetical protein UM01467.1 [Ustilago maydis 521]
Length = 674
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/371 (60%), Positives = 279/371 (75%), Gaps = 3/371 (0%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F LPT EE E EK + DL + RI+E+V VLSNFK L+ G SR EYV+QL D+ +Y
Sbjct: 238 FMLPTLEEREAEKVRGADLQLVHMRIQEVVTVLSNFKKLAVDGRSRSEYVEQLLADICTY 297
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
YGYN FL L E+F P E +E E+ E PRP+ +R NTL+TRRRDLA LINRGVNL+P
Sbjct: 298 YGYNAFLAEKLFELFTPAEAIEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVNLEP 357
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ WSKVGL V++S VPIGATPEY+AG YMLQ+ASSFLP +ALAPQ ERV+DMA+APGG
Sbjct: 358 IGAWSKVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASAPGG 417
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K+TY++ALM+NTG ++AN+ +R+KSL AN+HR+G N +VCNYDG + PKV+G D
Sbjct: 418 KSTYLSALMQNTGTVFANDSNKNRIKSLVANIHRLGCKNVVVCNYDGRQFPKVIG--GFD 475
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLD+PCSGTGVI KD+SVK +KS D ++LQKQL+L AID V+ S +GGY+VYS
Sbjct: 476 RVLLDSPCSGTGVIHKDQSVKVNKSERDFALLTHLQKQLLLCAIDSVNPRSSTGGYVVYS 535
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TCS+MV ENE V+ YAL+KR +VK+V G+ FGR GF F +F + RR +PHVH
Sbjct: 536 TCSVMVEENEEVVQYALRKRSNVKIVDTGIQFGRDGFKSFGRSKFDERMVYARRIFPHVH 595
Query: 371 NMDGFFVAKLK 381
N+DGFFV KLK
Sbjct: 596 NLDGFFVCKLK 606
>gi|406697452|gb|EKD00711.1| nucleolar RNA m(5)C methyltransferase, Nop2p [Trichosporon asahii
var. asahii CBS 8904]
Length = 669
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/394 (56%), Positives = 289/394 (73%), Gaps = 7/394 (1%)
Query: 1 MQLNIRE--ESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLS--NFKDLSQKGTS 56
+Q N+ + E + F LP + + EE + L +++ R++ + RV S + K G S
Sbjct: 194 IQTNLEDDLEDEGFTLPAVDGVVEEYEHGVSLRDVENRMRWLTRVCSAKDEKINGVAGKS 253
Query: 57 RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRR 116
R +++ QL+ D+ +Y+GYN FL+ L+++F E + ES E PRP+ +R NTL+TRRR
Sbjct: 254 RSDHLLQLEHDIATYFGYNHFLVNKLMKLFNADEALAFFESNESPRPVTIRANTLRTRRR 313
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
DLA LINRGV L+P+ KWSKVGL V++S VP+GATPEY+AG YMLQ+ASSFLPV+ALAP
Sbjct: 314 DLAQALINRGVTLEPIGKWSKVGLQVFESPVPVGATPEYLAGHYMLQAASSFLPVIALAP 373
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
Q ERV+DMA+APGGKTTY++ALM+NTG ++AN+ +R KSLTAN+HRMG N +VCNY
Sbjct: 374 QPGERVLDMASAPGGKTTYLSALMQNTGTVFANDSNKARTKSLTANVHRMGCKNVVVCNY 433
Query: 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296
D E P+V+G DRVLLDAPCSGTGVISKD SVK +K+ +D Q ++LQKQLIL A+D
Sbjct: 434 DAREFPRVIG--GFDRVLLDAPCSGTGVISKDASVKVNKTEKDFQMLAHLQKQLILCALD 491
Query: 297 MVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRF 355
++ NS +GGY+VYSTCSI V E+E+V+DYAL+KR VKLV GL+FG GF F F
Sbjct: 492 SINPNSATGGYLVYSTCSITVDEDESVVDYALRKRPHVKLVETGLEFGVPGFTSFEGKHF 551
Query: 356 HPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKT 389
HPSL TRR+YPH HNMDGF+VAK K KK+
Sbjct: 552 HPSLSLTRRYYPHKHNMDGFYVAKFKVGKRLKKS 585
>gi|401888795|gb|EJT52744.1| nucleolar RNA m(5)C methyltransferase, Nop2p [Trichosporon asahii
var. asahii CBS 2479]
Length = 669
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/394 (56%), Positives = 289/394 (73%), Gaps = 7/394 (1%)
Query: 1 MQLNIRE--ESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLS--NFKDLSQKGTS 56
+Q N+ + E + F LP + + EE + L +++ R++ + RV S + K G S
Sbjct: 194 IQTNLEDDLEDEGFTLPAVDGVVEEYEHGVSLRDVENRMRWLTRVCSAKDEKINGVAGKS 253
Query: 57 RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRR 116
R +++ QL+ D+ +Y+GYN FL+ L+++F E + ES E PRP+ +R NTL+TRRR
Sbjct: 254 RSDHLLQLEHDIATYFGYNHFLVNKLMKLFNADEALAFFESNESPRPVTIRANTLRTRRR 313
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
DLA LINRGV L+P+ KWSKVGL V++S VP+GATPEY+AG YMLQ+ASSFLPV+ALAP
Sbjct: 314 DLAQALINRGVTLEPIGKWSKVGLQVFESPVPVGATPEYLAGHYMLQAASSFLPVIALAP 373
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
Q ERV+DMA+APGGKTTY++ALM+NTG ++AN+ +R KSLTAN+HRMG N +VCNY
Sbjct: 374 QPGERVLDMASAPGGKTTYLSALMQNTGTVFANDSNKARTKSLTANVHRMGCKNVVVCNY 433
Query: 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296
D E P+V+G DRVLLDAPCSGTGVISKD SVK +K+ +D Q ++LQKQLIL A+D
Sbjct: 434 DAREFPRVIG--GFDRVLLDAPCSGTGVISKDASVKVNKTEKDFQMLAHLQKQLILCALD 491
Query: 297 MVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRF 355
++ NS +GGY+VYSTCSI V E+E+V+DYAL+KR VKLV GL+FG GF F F
Sbjct: 492 SINPNSATGGYLVYSTCSITVDEDESVVDYALRKRPHVKLVETGLEFGVPGFTSFEGKHF 551
Query: 356 HPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKT 389
HPSL TRR+YPH HNMDGF+VAK K KK+
Sbjct: 552 HPSLSLTRRYYPHKHNMDGFYVAKFKVGKRLKKS 585
>gi|440803888|gb|ELR24771.1| NOL1/NOP2/sun family putative RNA methylase subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 689
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/392 (55%), Positives = 282/392 (71%), Gaps = 22/392 (5%)
Query: 14 LPTKEEIEEEKQQPP-------DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKL 66
LP K+E E++ P DL ++ + E++RVL+NF L + G R+EY+ QL+
Sbjct: 221 LPPKDEGEDDANDMPMQSLMGMDLEAVRTHMHEVLRVLNNFGKLREPGRQRREYLTQLRH 280
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
D+ +YYGY+E+++ ++ +F E ME E+ E PRP+ +RTNTLKTRRR+LA LI RG
Sbjct: 281 DIAAYYGYSEWMVAKILNLFTLNEAMEFFEANEAPRPLTIRTNTLKTRRRELAQSLIQRG 340
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
VNLDPLSKWS VGL +YDS VPIGATPEY+ G YMLQSASSF+PV+AL PQ ERV+DM
Sbjct: 341 VNLDPLSKWSNVGLQIYDSPVPIGATPEYLTGQYMLQSASSFIPVLALDPQPGERVLDMC 400
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
AAPGGKTTYIA +MKNTG++++N+ + R++++ AN+HRMG+ NT++ NYDG P+V+G
Sbjct: 401 AAPGGKTTYIAQMMKNTGVLFSNDKHSERVRAVVANVHRMGIRNTVITNYDGRMFPRVMG 460
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD--ANSKS 304
DR+LLDAPC+G+GVISKD SVKT K D+ + S++QK+LILAAID VD +S
Sbjct: 461 --GFDRILLDAPCTGSGVISKDPSVKTQKDERDVHRMSHIQKELILAAIDSVDMKGHSSG 518
Query: 305 GGYIVYSTCSIMVTENE-----------AVIDYALKKRDVKLVPCGLDFGRQGFVRFREH 353
G IVYSTCSI++ ENE AV+DYALKKR VK+VP G+ FG+ GF R
Sbjct: 519 GAVIVYSTCSILIEENEVVFVIILTFVSAVVDYALKKRAVKVVPSGVPFGKPGFTRIGSR 578
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+FHPSL+ R YPH HNMDGFFV KL K N
Sbjct: 579 QFHPSLKHAVRVYPHTHNMDGFFVCKLIKYDN 610
>gi|401426108|ref|XP_003877538.1| putative nucleolar protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493784|emb|CBZ29073.1| putative nucleolar protein [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 625
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/446 (50%), Positives = 312/446 (69%), Gaps = 14/446 (3%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E VRVLSNFK ++ R EY++ L+ DL Y Y+EFL+ A++++FPP E +
Sbjct: 188 LRDRIQETVRVLSNFKQEREEDRERGEYLELLRSDLLELYEYSEFLMDAVLQLFPPAEAV 247
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
+ +E+ EK RP +R NTLK +RRDL L+ RG+N++PL KWSKVGL V++S VPI T
Sbjct: 248 DFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAGT 307
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQ+A+SFLPVMALAPQE +RV+DM+AAPGGKTTYIA LMKNTG+++AN++
Sbjct: 308 IEYLAGHYMLQAAASFLPVMALAPQENDRVLDMSAAPGGKTTYIAQLMKNTGVLFANDVS 367
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R KSL ANL R+GVTN IV NYDG +V + DRVLLDAPCSGTG+IS+D+S+K
Sbjct: 368 EPRCKSLNANLQRLGVTNCIVTNYDGTGYERV--MRNFDRVLLDAPCSGTGIISRDKSIK 425
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
TSK EDIQ+ S LQ+ L+L AID K GGY+VYSTCS +V E+EA++D+AL++RD
Sbjct: 426 TSKQYEDIQRASQLQRALLLGAIDAC----KIGGYVVYSTCSFLVEEDEAIVDFALRRRD 481
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAG 392
+++V GL FGR GF ++R HR+H SLE +RR++PHVHNMDGFF+ K+KK+S+S T+
Sbjct: 482 LQVVEMGLPFGRPGFTKYRHHRYHNSLELSRRYFPHVHNMDGFFICKMKKLSDS--TTKK 539
Query: 393 PQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVES--- 449
P ++ + + S+ K+ + ++ + + + K K LAE ++
Sbjct: 540 PDAADENLSRAGSTPASSSKKRGHSSDNITELQVGSKRVRLEKGKAVVLAEKAPAKNHKL 599
Query: 450 ---PSNEKRRKKRKFPSREEISKVRE 472
PS++ R +RK + + K RE
Sbjct: 600 SVPPSSKATRSERKMKEKRKPHKTRE 625
>gi|407036203|gb|EKE38056.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
nuttalli P19]
Length = 497
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/383 (57%), Positives = 291/383 (75%), Gaps = 7/383 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ NI E LP+ +EI Q+ D+ + RI+EIV VL +FK ++G SR+EY
Sbjct: 115 MQTNIAAEQ-RHTLPSGQEIIH-AQEIGDVATIGTRIREIVAVLCDFKARHEEGRSRQEY 172
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L D+ +YY NEFL +V++F P ++ +E+ E PRP+ +R NTLK+RRR+LA
Sbjct: 173 ISLLIQDMQTYYSCNEFLATLVVDLFGPKGAVDFMEANEAPRPVTIRVNTLKSRRRELAQ 232
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVN+D + +WSK GLVVYDSQVPIGATPEY+AG Y+LQS+SS++ V+ALAPQ E
Sbjct: 233 KLINRGVNVD-MVEWSKSGLVVYDSQVPIGATPEYLAGQYILQSSSSWVSVIALAPQPNE 291
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+++DM AAPGGKTT+IAALMK+TG++ AN++ RLK++ N+HR+G+TNTI+ NYDG+E
Sbjct: 292 KILDMCAAPGGKTTHIAALMKDTGVLVANDISKDRLKAVIGNVHRLGITNTIITNYDGHE 351
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVL+DAPC+G G+IS+D +VK SKS +DI+ C+ +QK+LIL AID V+
Sbjct: 352 FPKVMG--QFDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNP 409
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLD--FGRQGFVRFREHRFHPS 358
SK+GGY+VYSTCSI V ENEAVIDYALKKR+VK+VP L G G+V R++RFHPS
Sbjct: 410 KSKTGGYVVYSTCSITVEENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQYRFHPS 469
Query: 359 LEKTRRFYPHVHNMDGFFVAKLK 381
++ +RF+PHV NMDGFFV KLK
Sbjct: 470 VKMAKRFFPHVQNMDGFFVCKLK 492
>gi|403411733|emb|CCL98433.1| predicted protein [Fibroporia radiculosa]
Length = 655
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/377 (62%), Positives = 287/377 (76%), Gaps = 15/377 (3%)
Query: 12 FRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG- 69
F LPT EE EEEK PD+ +QRR++E VR L FK L++ G Q L DL
Sbjct: 213 FHLPTAEEREEEKASGGPDVHTVQRRMRECVRALGKFKRLAENGR------QVLFRDLSA 266
Query: 70 ----SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
SYYGYNEFL L ++FP E +E E+ E PRP+ +RTNTL+TRRRDLA LINR
Sbjct: 267 SYTHSYYGYNEFLTEKLFQLFPVAEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQALINR 326
Query: 126 GVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185
GVNL+P+ KW+ VGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+ALAPQ ERV+DM
Sbjct: 327 GVNLEPIGKWTNVGLQVFESSVPIGATPEYLAGQYMLQAASSFLPVIALAPQPNERVLDM 386
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APGGKTT++AALM+NTG+++AN+ K +R KSLTAN+HR+G N +VC+YDG E PKV+
Sbjct: 387 ASAPGGKTTHMAALMENTGVVFANDAKKARTKSLTANVHRLGCKNVVVCSYDGREFPKVM 446
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
G DRVLLDAPCSGTGVISKD SVKT+KS D S+LQKQLIL AID V +SK+G
Sbjct: 447 G--GFDRVLLDAPCSGTGVISKDASVKTNKSERDFALLSHLQKQLILCAIDSVTPDSKTG 504
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
GY+VYSTCS+ V ENEAV+DYAL+KR +VKLV GL+FGR G+ ++R F+ + TRR
Sbjct: 505 GYLVYSTCSVTVDENEAVVDYALRKRPNVKLVDTGLEFGRPGYTKYRGKVFNEKVSLTRR 564
Query: 365 FYPHVHNMDGFFVAKLK 381
FYPHVHNMDGF+VAK K
Sbjct: 565 FYPHVHNMDGFYVAKFK 581
>gi|167540287|ref|XP_001741734.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893617|gb|EDR21802.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 505
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/383 (56%), Positives = 291/383 (75%), Gaps = 7/383 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ NI E LP+ +EI Q+ D+ + RI+EIV VL +FK ++G SR+EY
Sbjct: 123 MQTNIAAEQ-RHTLPSGQEIIH-AQEIGDVATIGTRIREIVAVLCDFKARHEEGRSRQEY 180
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L D+ +YY NEFL +V++F P ++ +E+ E PRP+ +R NTLK+RRR+LA
Sbjct: 181 IALLIQDMQTYYSCNEFLAKLVVDLFGPKGAVDFMEANEAPRPVTIRVNTLKSRRRELAQ 240
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVN+D + +WSK GLVVYDSQVPIGATPEY+AG Y+LQS+SS++ V+ALAPQ E
Sbjct: 241 KLINRGVNVD-MIEWSKSGLVVYDSQVPIGATPEYLAGQYILQSSSSWVSVIALAPQPNE 299
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+++DM AAPGGKTT+IAALMK+TG++ AN++ RLK++ N+HR+G+TNTI+ NYDG+E
Sbjct: 300 KILDMCAAPGGKTTHIAALMKDTGILVANDISKDRLKAVIGNVHRLGITNTIITNYDGHE 359
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVL+DAPC+G G+IS+D +VK SKS +DI+ C+ +QK+LIL AID V+
Sbjct: 360 FPKVMG--QFDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNP 417
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLD--FGRQGFVRFREHRFHPS 358
SK+GGY+VYSTCSI V ENEAVIDYALKKR+VK+VP L G G+V R++RFHPS
Sbjct: 418 KSKTGGYVVYSTCSITVEENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQYRFHPS 477
Query: 359 LEKTRRFYPHVHNMDGFFVAKLK 381
++ +RF+PH+ NMDGFFV KLK
Sbjct: 478 VKMAKRFFPHIQNMDGFFVCKLK 500
>gi|398019893|ref|XP_003863110.1| nucleolar protein, putative [Leishmania donovani]
gi|322501342|emb|CBZ36420.1| nucleolar protein, putative [Leishmania donovani]
Length = 628
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 210/354 (59%), Positives = 276/354 (77%), Gaps = 6/354 (1%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E VRVLSNFK ++ R EY++ L+ DL Y Y+EFL+ +++++FPP E +
Sbjct: 191 LRDRIQETVRVLSNFKQEREEDRERGEYLELLRSDLLELYEYSEFLMDSILQLFPPAEAV 250
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
+ +E+ EK RP +R NTLK +RRDL L+ RG+N++PL KWSKVGL V++S VPI T
Sbjct: 251 DFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAGT 310
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQ+A+SFLPVMALAPQE ERV+DM+AAPGGKTTYIA LMKNTG+++AN++
Sbjct: 311 IEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGGKTTYIAQLMKNTGVLFANDVS 370
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R KSL ANL R+GVTN IV NYDG +V + DRVLLDAPCSGTG+IS+D+S+K
Sbjct: 371 EPRCKSLNANLQRLGVTNCIVTNYDGTGYERV--MRNFDRVLLDAPCSGTGIISRDKSIK 428
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
TSK EDIQ+ S LQ+ L+L+AID K GGY+VYSTCS +V E+EA++D+AL++RD
Sbjct: 429 TSKQHEDIQRASQLQRALLLSAIDAC----KIGGYVVYSTCSFLVEEDEAIVDFALRRRD 484
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
V++V GL FGR GF ++R HR+H SLE +RR++PHVHNMDGFF+ KLKK+S+S
Sbjct: 485 VQVVEMGLPFGRPGFTKYRHHRYHDSLEFSRRYFPHVHNMDGFFICKLKKLSDS 538
>gi|342886300|gb|EGU86169.1| hypothetical protein FOXB_03305 [Fusarium oxysporum Fo5176]
Length = 679
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/385 (56%), Positives = 278/385 (72%), Gaps = 10/385 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F +LS++G SR EY QL D+ SYYGY+E+L L +F
Sbjct: 236 PDLQLLRTRITENIRVLDDFANLSEEGRSRVEYTSQLIKDICSYYGYSEYLAEKLFNLFT 295
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 296 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSV 355
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLP MAL PQE ERV+DMAAAPGGKTTY+AA+MKNTG++
Sbjct: 356 PLGATPEYLAGHYILQAASSFLPCMALDPQENERVLDMAAAPGGKTTYMAAMMKNTGIVV 415
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+G N IV NYD E PK +G DRVLLDAPCSGTGVI+K
Sbjct: 416 ANDPNKARAKGLIGNIHRLGTRNVIVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAK 473
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + ++QKQL+LAAID V+ SK+GGYIVYSTCS+ V ENE V+ YA
Sbjct: 474 DPSVKTNKTERDFMQLPHIQKQLVLAAIDSVNHASKTGGYIVYSTCSVTVEENEQVVQYA 533
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM--- 383
L +R +V+LV GL FG++GF + +F PS+ TRR+YPH +N+DGFFVAK K+
Sbjct: 534 LSRRPNVRLVDAGLAFGKEGFTSYMGKKFDPSMRHTRRYYPHTYNVDGFFVAKFHKIGPT 593
Query: 384 ----SNSKKTSAGPQPSETVEQQTP 404
SN++ S GP + V +TP
Sbjct: 594 PANASNARDRSTGPADEDEVIDRTP 618
>gi|312377716|gb|EFR24477.1| hypothetical protein AND_10896 [Anopheles darlingi]
Length = 885
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/377 (56%), Positives = 279/377 (74%), Gaps = 6/377 (1%)
Query: 10 DEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
+ F PT+E++ Q +L ++ RIK+++ VLS+F SR EY+ L+ DL
Sbjct: 258 ERFEFPTEEQL----AQTTNLQDVNMRIKDVIGVLSDFAANRDPERSRCEYIDLLRKDLC 313
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
YY YNE+ + L+++F P EL+E +E+ E RPI +RTN+LKTRRRDLA LINRG+NL
Sbjct: 314 LYYSYNEYFMNLLMDLFSPNELLEFLEASELQRPITIRTNSLKTRRRDLAQALINRGINL 373
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
DP+ KWSK GLVVY SQVP+GATPEY AG YMLQ SS LPV+ALAP+E ER++DM AAP
Sbjct: 374 DPIGKWSKDGLVVYTSQVPLGATPEYFAGHYMLQGGSSMLPVLALAPEENERILDMCAAP 433
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGK+++IAALMKNTG++ N+ RL ++ N HR+GV N I+ DG + +
Sbjct: 434 GGKSSHIAALMKNTGVLVVNDSNRERLHAVLGNFHRLGVQNAIITCMDGIKFRDA--MKG 491
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPC+G+GVI+KD SVKTSK+ D+QKC LQ++L+L+AID + A SK+GGY+V
Sbjct: 492 FDRVLLDAPCTGSGVIAKDPSVKTSKTEIDVQKCYNLQRRLLLSAIDCLSAKSKTGGYLV 551
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTCS++ ENE VID+ALKKR+V+LVP G+DFG +G RF R+H S++ TRRFYPH
Sbjct: 552 YSTCSVLPQENEWVIDFALKKRNVRLVPLGIDFGVEGLTRFGVQRYHSSMKLTRRFYPHT 611
Query: 370 HNMDGFFVAKLKKMSNS 386
HNMDGFFVAKL+K S++
Sbjct: 612 HNMDGFFVAKLQKFSDA 628
>gi|146094454|ref|XP_001467280.1| putative nucleolar protein [Leishmania infantum JPCM5]
gi|134071645|emb|CAM70335.1| putative nucleolar protein [Leishmania infantum JPCM5]
Length = 628
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/354 (59%), Positives = 276/354 (77%), Gaps = 6/354 (1%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E VRVLSNFK ++ R EY++ L+ DL Y Y+EFL+ +++++FPP E +
Sbjct: 191 LRDRIQETVRVLSNFKQEREEDRERGEYLELLRSDLLELYEYSEFLMDSILQLFPPAEAV 250
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
+ +E+ EK RP +R NTLK +RRDL L+ RG+N++PL KWSKVGL V++S VPI T
Sbjct: 251 DFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAGT 310
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQ+A+SFLPVMALAPQE ERV+DM+AAPGGKTTYIA LMKNTG+++AN++
Sbjct: 311 IEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGGKTTYIAQLMKNTGVLFANDVS 370
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R KSL ANL R+GVTN IV NYDG +V + DRVLLDAPCSGTG+IS+D+S+K
Sbjct: 371 EPRCKSLNANLQRLGVTNCIVTNYDGTGYERV--MRNFDRVLLDAPCSGTGIISRDKSIK 428
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
TSK EDIQ+ S LQ+ L+L+AID K GGY+VYSTCS +V E+EA++D+AL++RD
Sbjct: 429 TSKQHEDIQRASQLQRALLLSAIDAC----KIGGYVVYSTCSFLVEEDEAIVDFALRRRD 484
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
V++V GL FGR GF ++R HR+H SLE +RR++PHVHNMDGFF+ KLKK+++S
Sbjct: 485 VQVVEMGLPFGRPGFTKYRHHRYHDSLEFSRRYFPHVHNMDGFFICKLKKLTDS 538
>gi|403166005|ref|XP_003889974.1| hypothetical protein PGTG_21386 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166030|gb|EHS63044.1| hypothetical protein PGTG_21386 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 715
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/495 (50%), Positives = 330/495 (66%), Gaps = 18/495 (3%)
Query: 4 NIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQK--GTSRKEYV 61
N E+ DE L +I + PDL L RI+E VRVL N+ L +K G SR +
Sbjct: 206 NDEEDEDENALDA--DIMNHNKGVPDLRKLYSRIQESVRVLGNWSVLGKKAKGKSRADVT 263
Query: 62 QQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADV 121
+Q D+ Y+GYN FL L ++F P E + E+ E RP+ +RTNTL+T RRDLA
Sbjct: 264 EQTLNDVCEYFGYNAFLSDLLWQLFDPEEALAFFEANETARPVTIRTNTLRTNRRDLAQS 323
Query: 122 LINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER 181
LINRGVNL+P+ KWSKVGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+AL PQ E+
Sbjct: 324 LINRGVNLEPIGKWSKVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALDPQPGEK 383
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
+DM+AAPGGKTT+++A+MKNTG ++AN+ +R KSL AN+ RMG N I+ N+D +
Sbjct: 384 CLDMSAAPGGKTTFMSAMMKNTGKLFANDSSKARCKSLMANVSRMGCHNVIISNHDARDF 443
Query: 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301
PKV+G +RVLLDAPCSGTGVISKD SVK +KS +D+ S+LQKQLIL+AID V +
Sbjct: 444 PKVMG--GFNRVLLDAPCSGTGVISKDASVKNNKSEKDLLLLSHLQKQLILSAIDSVSPH 501
Query: 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S +GGY+VYSTCS+ V ENE+V+DYALKKR +VKLV G+ FG++GFVRFR F+PSL+
Sbjct: 502 STNGGYLVYSTCSVTVEENESVVDYALKKRPNVKLVETGIGFGKEGFVRFRGKIFNPSLK 561
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKK---TEE 417
TRRFYPHVHN+DGFFVAKLK N K +A Q E + + S DKK ++
Sbjct: 562 MTRRFYPHVHNVDGFFVAKLK--VNPKAKTAPIQEEEEDDVEETLSQDDIPDKKQKASKA 619
Query: 418 NSEQVLMKKATTKAKDLKKKTSGLAENG-NVESPSNEKRRKKRKFPSREEISKVREEKRK 476
E V + K S L G +V P+ EK+R K+ + + ++ ++ ++
Sbjct: 620 KDEPVAFDDSEDAEIIASAKISQLKAKGIHVTRPNPEKKRSKKHEDDQPDATEKKQAAKQ 679
Query: 477 -----TLREKVSSKK 486
TL EKV+SKK
Sbjct: 680 QSDGPTLTEKVNSKK 694
>gi|389633125|ref|XP_003714215.1| nucleolar protein NOP2 [Magnaporthe oryzae 70-15]
gi|351646548|gb|EHA54408.1| nucleolar protein NOP2 [Magnaporthe oryzae 70-15]
gi|440471521|gb|ELQ40524.1| nucleolar protein NOP2 [Magnaporthe oryzae Y34]
gi|440481650|gb|ELQ62210.1| nucleolar protein NOP2 [Magnaporthe oryzae P131]
Length = 678
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/400 (54%), Positives = 287/400 (71%), Gaps = 13/400 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + VRVL +F +LS++G SR EY QL D+ +YYGY+E+L L+++FP
Sbjct: 238 PDLQMLRTRITDTVRVLEDFANLSEEGRSRAEYSNQLLKDICAYYGYSEYLAQKLMDLFP 297
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
E E+ E PRP+ +RTNTL+T RRDLA L+NRGV L+P+ KWSKVGL ++DS V
Sbjct: 298 AREAFAFFEANETPRPVVIRTNTLRTSRRDLAQALVNRGVTLEPVGKWSKVGLQIFDSNV 357
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+ G Y+LQ+ASSFLPVMAL PQE ERV+DM+AAPGGKTT+ AALMKNTG+I
Sbjct: 358 PLGATPEYLGGHYILQAASSFLPVMALCPQENERVLDMSAAPGGKTTHCAALMKNTGVII 417
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+GV N+IVCNYD E+P ++G DRVLLDAPCSGTGVISK
Sbjct: 418 ANDPNKARSKGLIGNIHRLGVKNSIVCNYDAREIPNLIG--GFDRVLLDAPCSGTGVISK 475
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ +D + ++QKQL+LAAID +K GGYIVYSTCS+ V ENE V++YA
Sbjct: 476 DPSVKTNKTEKDFMQLPHVQKQLLLAAIDA----TKVGGYIVYSTCSVTVEENEQVVNYA 531
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +V+L+ GL FG++GF F +FHPS++ TRR+YPH +N+DGF+VAK KK +
Sbjct: 532 LSRRSNVELLETGLPFGKEGFTSFMGKKFHPSVKMTRRYYPHTYNVDGFYVAKFKKTGPT 591
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKK 426
+ G S SNG K T +++ + K
Sbjct: 592 PANARGGASSGEFAAN------SNGSKTTASGEDEMEVDK 625
>gi|388583315|gb|EIM23617.1| NOL1/NOP2/sun family putative RNA met [Wallemia sebi CBS 633.66]
Length = 465
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/416 (53%), Positives = 294/416 (70%), Gaps = 6/416 (1%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+EE E E + D + RI++IVR+L +F+ SR +Y QQL D+ SYYG
Sbjct: 3 LPTEEEKEREATEGQDAQVVYGRIRDIVRILGDFRRFKAANRSRADYTQQLIADISSYYG 62
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L MF P E + ++ E PRP+ +R NTLKTRRRDLA LINRGV+L+P+
Sbjct: 63 YTPFLAEKLFSMFSPDEAVAFFDANETPRPVTIRANTLKTRRRDLAQALINRGVSLEPIG 122
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
KW+KVGL ++DS VP+GATPEY+AG YMLQS SSFLPVMAL PQ ERV+DMA+APGGKT
Sbjct: 123 KWTKVGLQIFDSNVPVGATPEYLAGHYMLQSPSSFLPVMALDPQPNERVLDMASAPGGKT 182
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
+Y++ALM+NTG+++AN+ A+R KSL+AN+HR+G N +VC +DG + PKV+G DRV
Sbjct: 183 SYMSALMQNTGVVFANDANAARTKSLSANVHRLGCKNVVVCTHDGRQFPKVIG--GFDRV 240
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGV+SKD+SVK +K+ D S+LQKQLIL AID ++ S +GG++VYSTC
Sbjct: 241 LLDAPCSGTGVVSKDQSVKVNKTERDFALLSHLQKQLILCAIDSINTKSATGGFVVYSTC 300
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+E V+DYALKKR +VKLV GL+FG +GF +FH + TRRFYPHVHNM
Sbjct: 301 SVTVDEDEGVVDYALKKRPNVKLVDTGLEFGVEGFTNIGGKQFHKDMHLTRRFYPHVHNM 360
Query: 373 DGFFVAKLKKMSNS---KKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMK 425
+GFFV+KL+ + S K + E E+ + N + D ++ ++ LM+
Sbjct: 361 EGFFVSKLQVLPRSVLKNKLQQAEEKEENDERLEEDDNEAGADVTFNDDEDKALME 416
>gi|449701642|gb|EMD42424.1| proliferating-cell nucleolar antigen p120, putative [Entamoeba
histolytica KU27]
Length = 503
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/383 (56%), Positives = 290/383 (75%), Gaps = 7/383 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ NI E LP+ +EI Q+ D+ + RI+EIV VL +FK ++G SR+EY
Sbjct: 121 MQTNIAAEQ-RHTLPSGQEIIH-AQEIGDVATIGTRIREIVAVLCDFKARHEEGRSRQEY 178
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L D+ +YY NEFL +V++F P ++ +E+ E PRP+ +R NTLK+RRR+LA
Sbjct: 179 ISLLIQDMQTYYSCNEFLATLVVDLFGPKGAVDFMEANEAPRPVTIRVNTLKSRRRELAQ 238
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVN+D + +WSK GLVVYDSQVPIGATPEY+AG Y+LQS+SS++ V+ALAPQ E
Sbjct: 239 KLINRGVNVD-MIEWSKSGLVVYDSQVPIGATPEYLAGQYILQSSSSWVSVIALAPQPNE 297
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+++DM AAPGGKTT+IAALMK+TG++ AN++ RLK++ N+HR+G+TNTI+ N DG+E
Sbjct: 298 KILDMCAAPGGKTTHIAALMKDTGVLVANDISKDRLKAVIGNVHRLGITNTIITNCDGHE 357
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVL+DAPC+G G+IS+D +VK SKS +DI+ C+ +QK+LIL AID V+
Sbjct: 358 FPKVMG--QFDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNP 415
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLD--FGRQGFVRFREHRFHPS 358
SK+GGY+VYSTCSI V ENEAVIDYALKKR+VK+VP L G G+V R++RFHPS
Sbjct: 416 KSKTGGYVVYSTCSITVEENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQYRFHPS 475
Query: 359 LEKTRRFYPHVHNMDGFFVAKLK 381
++ +RF+PH+ NMDGFFV KLK
Sbjct: 476 VKMAKRFFPHIQNMDGFFVCKLK 498
>gi|322692462|gb|EFY84371.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium acridum CQMa
102]
Length = 657
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/377 (58%), Positives = 273/377 (72%), Gaps = 11/377 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F +L++ G SR EY QL D+ +YYGY+E+L L +F
Sbjct: 226 PDLQLLRTRITENIRVLDDFANLAEDGRSRSEYTAQLIKDVCAYYGYSEYLAEKLYNLFT 285
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 286 PREAFAFFEANETARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSV 345
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLP MAL PQE ERV+DMAAAPGGKTTY+AA+MKNTG+I
Sbjct: 346 PLGATPEYLAGHYILQAASSFLPCMALDPQENERVLDMAAAPGGKTTYMAAMMKNTGVII 405
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+G N IV NYD E PK +G DRVLLDAPCSGTGVI+K
Sbjct: 406 ANDPNKARAKGLIGNIHRLGARNVIVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAK 463
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + + QKQL+LAAID V+ +SKSGGYIVYSTCS+ + ENE V+ YA
Sbjct: 464 DPSVKTNKTELDFMQLPHTQKQLLLAAIDSVNHSSKSGGYIVYSTCSVTIEENEQVVQYA 523
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
LK+R +VKLV GL FG++GF F RF PSL TRR+YPH +N+DGF+VAK KK+
Sbjct: 524 LKRRPNVKLVDTGLAFGKEGFTSFMGKRFDPSLRLTRRYYPHAYNVDGFYVAKFKKI--- 580
Query: 387 KKTSAGPQPSETVEQQT 403
GP P++ T
Sbjct: 581 -----GPTPAQAPRDNT 592
>gi|146185731|ref|XP_001032410.2| NOL1/NOP2/sun family putative RNA methylase containing protein
[Tetrahymena thermophila]
gi|146143105|gb|EAR84747.2| NOL1/NOP2/sun family putative RNA methylase containing protein
[Tetrahymena thermophila SB210]
Length = 759
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/363 (57%), Positives = 278/363 (76%), Gaps = 6/363 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PD L +I +I+ +LS FK+ S+ G SR+ Y+++L YY YN L+ + MF
Sbjct: 124 PDQAILNMKINDILHILSKFKENSKDGRSRQSYLEELTEYFMQYYNYNRDLVQLFMTMFN 183
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P EL++ ES E+ RP+ +RTNTLKTRR++LA +LI RGVNLD L++W+KVGL +YDS+V
Sbjct: 184 PNELVQFFESNEQQRPLTIRTNTLKTRRKELAQILIQRGVNLDSLAEWTKVGLKIYDSKV 243
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
PIGATPEY+AG YMLQSASSFLPV+ALAPQ E+++DMAAAPGGKTTYIA LMKNTG+++
Sbjct: 244 PIGATPEYLAGHYMLQSASSFLPVIALAPQPNEKILDMAAAPGGKTTYIAQLMKNTGVLF 303
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN++KA R K+L N+ RMG+ N IV NYDG +L KV ++ DRVLLDAPC+G G+I++
Sbjct: 304 ANDVKADRNKALIFNVQRMGINNCIVTNYDGRKLNKV--IHNCDRVLLDAPCTGLGIIAR 361
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVK +K L D+QK ++LQ++LIL+AID K GGY+VYSTCS+ V ENE+V+DYA
Sbjct: 362 DPSVKATKQLIDVQKHAHLQRELILSAIDCC----KKGGYVVYSTCSVTVQENESVVDYA 417
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
LK R VKLV G++ G +G+ ++++ RF P L+KTRR PHVHNMDGF+VAKLKK+ N
Sbjct: 418 LKNRFVKLVDMGIEVGEEGYTKYQDKRFDPQLKKTRRILPHVHNMDGFYVAKLKKLENGP 477
Query: 388 KTS 390
+ +
Sbjct: 478 RVT 480
>gi|422294853|gb|EKU22153.1| ribosomal rna methyltransferase nop2 [Nannochloropsis gaditana
CCMP526]
Length = 753
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/434 (50%), Positives = 302/434 (69%), Gaps = 20/434 (4%)
Query: 32 NLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVEL 91
L+ RI+E+V +LS+F+ + G +R EYV+QL DL ++GY L G + M P E
Sbjct: 214 GLKERIEEVVHILSDFRARRKAGVARAEYVRQLGRDLSEHHGYLPELTGMFLTMLGPAEC 273
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK-WSKVGLVVYDSQVPIG 150
+E + + ++PRP+ +R NTLKTRR+DLA L+ RGV+L+PL+ WSKV L + DSQVP+G
Sbjct: 274 VEFMAANDRPRPLVVRANTLKTRRKDLAQALLKRGVSLEPLAGGWSKVALKIIDSQVPVG 333
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANE 210
ATPEY+AG Y+LQSASS PVMALAPQ ERV+D++AAPGGK +Y A LMKNTGL+ AN+
Sbjct: 334 ATPEYLAGHYILQSASSMTPVMALAPQPHERVLDLSAAPGGKASYCAQLMKNTGLLVAND 393
Query: 211 MKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDES 270
+K+ R K+ ANLHR+GV N +VC+YDG LP V + DR LLDAPCSG G++++D+S
Sbjct: 394 LKSERQKATIANLHRLGVRNAVVCSYDGRRLPSV--MKGFDRALLDAPCSGLGIVARDQS 451
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
VK ++L D++K S+LQ++L+ AA+D VDA SK+GG +VYSTCS+ V ENE V+DY L+
Sbjct: 452 VKVQRTLADVRKMSHLQRELLRAAVDCVDAGSKTGGVLVYSTCSVAVEENELVVDYILRA 511
Query: 331 R-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK 388
R +V++VP GL DFGR GF R EHRFHPSL TRRFYPHVHNMDGFFV KL+K++N+
Sbjct: 512 RPNVRVVPTGLGDFGRPGFTRVAEHRFHPSLALTRRFYPHVHNMDGFFVCKLQKLTNA-- 569
Query: 389 TSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVE 448
P + E++ E + G K+ + + + + K ++K E G E
Sbjct: 570 -----LPGKNEEEERAE---AKGKKRKQMRDGENVESRGNETRKGVQK-----VEKGEEE 616
Query: 449 SPSNEKRRKKRKFP 462
+P K++KK P
Sbjct: 617 APFRIKKKKKGSQP 630
>gi|67479223|ref|XP_654993.1| Proliferating-cell nucleolar antigen p120 [Entamoeba histolytica
HM-1:IMSS]
gi|56472094|gb|EAL49607.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 495
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/383 (56%), Positives = 290/383 (75%), Gaps = 7/383 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQ NI E LP+ +EI Q+ D+ + RI+EIV VL +FK ++G SR+EY
Sbjct: 113 MQTNIAAEQ-RHTLPSGQEIIH-AQEIGDVATIGTRIREIVAVLCDFKARHEEGRSRQEY 170
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L D+ +YY NEFL +V++F P ++ +E+ E PRP+ +R NTLK+RRR+LA
Sbjct: 171 ISLLIQDMQTYYSCNEFLATLVVDLFGPKGAVDFMEANEAPRPVTIRVNTLKSRRRELAQ 230
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVN+D + +WSK GLVVYDSQVPIGATPEY+AG Y+LQS+SS++ V+ALAPQ E
Sbjct: 231 KLINRGVNVD-MIEWSKSGLVVYDSQVPIGATPEYLAGQYILQSSSSWVSVIALAPQPNE 289
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+++DM AAPGGKTT+IAALMK+TG++ AN++ RLK++ N+HR+G+TNTI+ N DG+E
Sbjct: 290 KILDMCAAPGGKTTHIAALMKDTGVLVANDISKDRLKAVIGNVHRLGITNTIITNCDGHE 349
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVL+DAPC+G G+IS+D +VK SKS +DI+ C+ +QK+LIL AID V+
Sbjct: 350 FPKVMG--QFDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNP 407
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLD--FGRQGFVRFREHRFHPS 358
SK+GGY+VYSTCSI V ENEAVIDYALKKR+VK+VP L G G+V R++RFHPS
Sbjct: 408 KSKTGGYVVYSTCSITVEENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQYRFHPS 467
Query: 359 LEKTRRFYPHVHNMDGFFVAKLK 381
++ +RF+PH+ NMDGFFV KLK
Sbjct: 468 VKMAKRFFPHIQNMDGFFVCKLK 490
>gi|154342166|ref|XP_001567031.1| putative nucleolar protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064360|emb|CAM42450.1| putative nucleolar protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 625
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/414 (53%), Positives = 296/414 (71%), Gaps = 19/414 (4%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E VRVLSNFK+ ++ R EY++ L+ DL Y YNE L+ +++ +FPP E +
Sbjct: 183 LRDRIQETVRVLSNFKEEREEDRHRAEYLELLRADLLELYEYNELLMDSVLRLFPPAEAV 242
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
+ +E+ EK RP +R NTLK +RRDL L+ RG+N++PL KWSKVGL V++S VPI T
Sbjct: 243 DFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAGT 302
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQ+A+SFLPVMALAPQE ERV+DM+AAPGGKTTYIA LMKNTG+++AN++
Sbjct: 303 IEYLAGQYMLQAAASFLPVMALAPQEHERVLDMSAAPGGKTTYIAQLMKNTGVLFANDVS 362
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R KSL +NL R+GVTN IV NYDG +V + DRVLLDAPCSGTG+IS+D+S+K
Sbjct: 363 EPRCKSLNSNLQRLGVTNCIVTNYDGTGYERV--MRNFDRVLLDAPCSGTGIISRDKSIK 420
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
K EDIQ+ S LQ+ L+L+AID + GY+VYSTCS +V E+EA++D+ALK+RD
Sbjct: 421 MGKQYEDIQRASQLQRALLLSAIDAC----RVAGYVVYSTCSFLVEEDEAIVDFALKRRD 476
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAG 392
V++V GL FGR GF ++R HR+H SLE +RR++PHVHNMDGFFV KLKK+S+ +T+
Sbjct: 477 VQVVEMGLPFGRPGFTKYRHHRYHDSLELSRRYFPHVHNMDGFFVCKLKKLSD--RTTK- 533
Query: 393 PQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGL-AENG 445
QP T E+ + + S K +A+ A +L+ + GL ENG
Sbjct: 534 -QPDATNEKSSRAGSTSGSSAKKR--------GRASDDAAELQVGSKGLRLENG 578
>gi|330790279|ref|XP_003283225.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum]
gi|325086906|gb|EGC40289.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum]
Length = 672
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/358 (58%), Positives = 271/358 (75%), Gaps = 3/358 (0%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DLP + +RIK+++ L +F + G SR+ Y+ +LK D+ +Y+GY+ +L+ +++F
Sbjct: 210 DLPMVYQRIKDVIATLEDFNSQRKAGISRQVYMDRLKEDICTYFGYSSWLVDVFLKIFNA 269
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E +E E+ E RP+ +R NTLKTRR+DLA+ LI RGV+L+P+ KWS+VGL +YD+QV
Sbjct: 270 AEALEFFEANETHRPLTIRANTLKTRRKDLAEALIARGVHLEPI-KWSQVGLTIYDTQVA 328
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+AG Y+ QSASSFLPV+ALAPQ ERV+DM A+PGGKTTYIAA+MKNTG + A
Sbjct: 329 IGATPEYLAGQYIQQSASSFLPVLALAPQPNERVLDMCASPGGKTTYIAAMMKNTGTLVA 388
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N++ R+KSL AN+HR+GV N +V N DG E P VL DRVL+DAPC G GVISKD
Sbjct: 389 NDVNKERIKSLVANIHRLGVKNCVVSNMDGREYPSVLA--GFDRVLVDAPCVGLGVISKD 446
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
+K SKS +D+ C++ QK+L+L AID VDANS +GG IVYSTCS+ V ENEAV+DYAL
Sbjct: 447 PQIKISKSEQDVITCTHTQKELLLRAIDAVDANSATGGIIVYSTCSLTVEENEAVVDYAL 506
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
+ RDV +V ++FG GF FRE RFHPSL T+R+YPH HNMDGF+VAKLKK SN+
Sbjct: 507 RNRDVIIVDTTIEFGVDGFTSFRESRFHPSLALTKRYYPHTHNMDGFYVAKLKKRSNT 564
>gi|72388220|ref|XP_844534.1| nucleolar protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359769|gb|AAX80199.1| nucleolar protein, putative [Trypanosoma brucei]
gi|70801067|gb|AAZ10975.1| nucleolar protein, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 525
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/422 (54%), Positives = 293/422 (69%), Gaps = 32/422 (7%)
Query: 18 EEIEEEKQQPPDLPN------LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
EE EE+ +Q L L+ RI E V VLS+FK+ ++G +R++Y+Q L+ D+
Sbjct: 90 EEQEEDGEQVQLLGQQHTVEELRDRIGETVHVLSHFKEEREEGRTREDYMQLLRADIMEL 149
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
YGYNEFL +++ +F P E +E E+ EKPRP +R NT+K +RRDL L+ RG+N++P
Sbjct: 150 YGYNEFLTDSILLLFSPTEAVEFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEP 209
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
L KWSKVGL V++S VPI T EY+AG YMLQSA SFLPVMALAPQ ERV+DMAAAPGG
Sbjct: 210 LEKWSKVGLQVFESNVPISGTVEYLAGHYMLQSAVSFLPVMALAPQINERVLDMAAAPGG 269
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTTYIA LMKNTG+I+AN++ R KSL ANL R+GVTNT+V NYDG KV + D
Sbjct: 270 KTTYIAQLMKNTGVIFANDVSEPRTKSLNANLQRLGVTNTVVTNYDGVGFEKV--MKNFD 327
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
R+LLDAPC+G+G+IS+D+S+KTSK ED+Q+ S LQ+ L+L+AID V + GGYIVYS
Sbjct: 328 RILLDAPCTGSGIISRDKSIKTSKQYEDVQRASQLQRSLLLSAIDAV----RVGGYIVYS 383
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCS +V ENEAV+D+ L +RDV +V GL FGR G ++R HRFH L+ RR +PHVHN
Sbjct: 384 TCSFLVEENEAVVDFVLHRRDVAIVETGLPFGRPGLTKYRHHRFHDKLQNARRLFPHVHN 443
Query: 372 MDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEEN---SEQVLMKKAT 428
MDGFFV KLKK+SN+ + GP +NG KK E N SE V K T
Sbjct: 444 MDGFFVCKLKKLSNN---AGGPS--------------TNGLKKEESNVAKSENVKTMKGT 486
Query: 429 TK 430
K
Sbjct: 487 NK 488
>gi|261327715|emb|CBH10692.1| nucleolar protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 579
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/384 (57%), Positives = 282/384 (73%), Gaps = 13/384 (3%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI E V VLS+FK+ ++G +R++Y+Q L+ D+ YGYNEFL +++ +F P E +
Sbjct: 165 LRDRIGETVHVLSHFKEEREEGRTREDYMQLLRADIMELYGYNEFLTDSILLLFSPTEAV 224
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E E+ EKPRP +R NT+K +RRDL L+ RG+N++PL KWSKVGL V++S VPI T
Sbjct: 225 EFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPISGT 284
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQSA SFLPVMALAPQ ERV+DMAAAPGGKTTYIA LMKNTG+I+AN++
Sbjct: 285 VEYLAGHYMLQSAVSFLPVMALAPQINERVLDMAAAPGGKTTYIAQLMKNTGVIFANDVS 344
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R KSL ANL R+GVTNT+V NYDG KV + DR+LLDAPC+G+G+IS+D+S+K
Sbjct: 345 EPRTKSLNANLQRLGVTNTVVTNYDGVGFEKV--MKNFDRILLDAPCTGSGIISRDKSIK 402
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
TSK ED+Q+ S LQ+ L+L+AID V + GGYIVYSTCS +V ENEAV+D+ L +RD
Sbjct: 403 TSKQYEDVQRASQLQRSLLLSAIDAV----RVGGYIVYSTCSFLVEENEAVVDFVLHRRD 458
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAG 392
V +V GL FGR G ++R HRFH L+ RR +PHVHNMDGFFV KLKK+SN+
Sbjct: 459 VAIVEAGLPFGRPGLTKYRHHRFHDKLQNARRLFPHVHNMDGFFVCKLKKLSNN------ 512
Query: 393 PQPSETVEQQTPESNVS-NGDKKT 415
P T + ESNV+ +G+ KT
Sbjct: 513 PGGPSTNGLKKEESNVAKSGNVKT 536
>gi|324510580|gb|ADY44425.1| Ribosomal RNA methyltransferase, partial [Ascaris suum]
Length = 583
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/363 (57%), Positives = 280/363 (77%), Gaps = 3/363 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ ++ ++LPT EE+E E + P L +++RI ++ +VL +FK+ ++G SR+EY
Sbjct: 223 LQLNLVN-AETYKLPTIEEVEREMKTAPSLQIIKQRIADVFQVLGDFKNRREQGRSREEY 281
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLA 119
+ L DL +YYGYNE+L+G + +FP ELM+ ++S ++PRP+ +RTN+LK RR +LA
Sbjct: 282 MTILLKDLCTYYGYNEYLMGKFMNLFPSGSELMQFLDSNDQPRPVTVRTNSLKIRRGELA 341
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
+LINRG+N+DP +KW+KVGLVVYDSQ P+GATPEY+AG YM+Q SSFLPVMALAPQ
Sbjct: 342 KMLINRGMNVDPAAKWTKVGLVVYDSQFPVGATPEYLAGHYMIQGLSSFLPVMALAPQPN 401
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
E V+DM AAPGGKT++IAALMKNTG+++AN+ R +++ NLHRMGV N +V N DG
Sbjct: 402 ELVLDMCAAPGGKTSHIAALMKNTGVVFANDSNMVRCRAIIGNLHRMGVNNAVVSNLDGK 461
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
K + DRVLLDAPCSGTGVI KD+SVKTS+ +D+Q+ +Q+QLILAAID ++
Sbjct: 462 VFAKTMA-QGFDRVLLDAPCSGTGVIWKDDSVKTSRDSQDVQRRHTVQRQLILAAIDAIN 520
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
A S +GGY+VYSTCS++V ENEAV+DY L+KRD KLVP GL+ G +GF +FRE+RFHPSL
Sbjct: 521 AKSSTGGYLVYSTCSVLVEENEAVVDYVLRKRDCKLVPTGLEIGVEGFTKFREYRFHPSL 580
Query: 360 EKT 362
T
Sbjct: 581 NLT 583
>gi|310794553|gb|EFQ30014.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001]
Length = 741
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/403 (55%), Positives = 284/403 (70%), Gaps = 19/403 (4%)
Query: 7 EESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKL 66
+E DE TK + PDL L+ RI E +RVL +F +L ++G SR EYV QL
Sbjct: 212 DEDDELAAKTKTLLA------PDLQLLRTRITENIRVLDDFANLHEEGRSRVEYVSQLIK 265
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
D+ +YYGY+E+L L +F P E E+ E RP+ +RTNTL+T RRDLA LI+RG
Sbjct: 266 DICAYYGYSEYLAEKLFNLFSPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALISRG 325
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
V L+P+ KWSKVGL +++S VP+GATPEY+AG+Y+LQ+ASSFLPVMAL PQE ERV+DMA
Sbjct: 326 VTLEPVGKWSKVGLQIFESNVPLGATPEYLAGYYILQAASSFLPVMALEPQENERVLDMA 385
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
AAPGGKTT++AA+MKNTG+I AN+ R K L N+HR+G N +V NYD E PK +G
Sbjct: 386 AAPGGKTTHMAAMMKNTGVIVANDPSKQRAKGLIGNIHRLGARNVVVSNYDAREFPKPMG 445
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
DRVLLDAPCSGTGVI+KD SVKT+K+ D ++QKQLILAAID V+ +SK+GG
Sbjct: 446 --GFDRVLLDAPCSGTGVIAKDASVKTNKTERDFMLLPHMQKQLILAAIDSVNHHSKTGG 503
Query: 307 YIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
YIVYSTCS+ V ENEAV+ YAL +R +V+LV L FGR+GF + +F PSL+ TRR+
Sbjct: 504 YIVYSTCSVTVEENEAVVQYALSRRPNVRLVDTNLPFGREGFTSYMGKKFDPSLKLTRRY 563
Query: 366 YPHVHNMDGFFVAKLKKMSNSKKTSAGPQP--SETVEQQTPES 406
YPH +N+DGFFVAK +K GP P +E ++ P S
Sbjct: 564 YPHTYNVDGFFVAKFQKF--------GPTPAKAEKADRSAPGS 598
>gi|302691038|ref|XP_003035198.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8]
gi|300108894|gb|EFJ00296.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8]
Length = 422
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/346 (64%), Positives = 270/346 (78%), Gaps = 3/346 (0%)
Query: 37 IKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIE 96
++E VRVL F L++KG SR EY +QL D+ SYYGYNEFL L ++F E +E E
Sbjct: 1 MRECVRVLGRFNKLAEKGRSRIEYTEQLIADIASYYGYNEFLATKLFQLFSVPEAIEFFE 60
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
+ E PRP+ +RTNTL+TRRRDLA LINRGVNL+P+ KW+ VGL V++S VPIGATPEY+
Sbjct: 61 ANEVPRPVTIRTNTLRTRRRDLAQTLINRGVNLEPIGKWTNVGLQVFESSVPIGATPEYL 120
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
AG YMLQ+ASSFLPV+AL PQ ERV+DMA+APGGKTT+IAAL++NTG+++AN+ R
Sbjct: 121 AGHYMLQAASSFLPVIALDPQPHERVLDMASAPGGKTTHIAALLQNTGVVFANDANKQRT 180
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
KSLTAN+HRMG N +VC+YDG E PKV+G DRVLLDAPCSGTGVISKD SVK +KS
Sbjct: 181 KSLTANVHRMGCKNVVVCSYDGREFPKVIG--GFDRVLLDAPCSGTGVISKDASVKINKS 238
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKL 335
D ++LQKQLIL A+D V NSK+GGY+VYSTCS+ V ENEAVIDYAL+KR +VKL
Sbjct: 239 ERDFTLLAHLQKQLILCALDSVTPNSKTGGYVVYSTCSVTVDENEAVIDYALRKRPNVKL 298
Query: 336 VPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
V GL+FGR + FR FHPS+ RRFYPHVHNMDGFFVAK K
Sbjct: 299 VDTGLEFGRPAYTSFRGKTFHPSVGLARRFYPHVHNMDGFFVAKFK 344
>gi|157872965|ref|XP_001685003.1| putative nucleolar protein [Leishmania major strain Friedlin]
gi|68128074|emb|CAJ08197.1| putative nucleolar protein [Leishmania major strain Friedlin]
Length = 629
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/354 (58%), Positives = 275/354 (77%), Gaps = 6/354 (1%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E VRVLSNFK ++ R EY++ L+ DL Y Y+EFL+ +++++FPP E +
Sbjct: 192 LRDRIQETVRVLSNFKQEREEDRERGEYLELLRSDLLELYEYSEFLMDSILQLFPPAEAV 251
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
+ +E+ EK RP +R NTLK +RRDL L+ RG++++PL KWSKVGL V++S VPI T
Sbjct: 252 DFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMSVEPLEKWSKVGLQVFESNVPIAGT 311
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQ+A+SFLPVMALAPQE ERV+DM+AAPGGKTTYIA LMKNTG+++AN++
Sbjct: 312 IEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGGKTTYIAQLMKNTGVLFANDVS 371
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R KSL ANL R+GVTN IV NYDG +V + DRVLLDAPCSGTG+IS+D+S+K
Sbjct: 372 EPRCKSLNANLQRLGVTNCIVTNYDGTGYERV--MRNFDRVLLDAPCSGTGIISRDKSIK 429
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
TSK +DIQ+ S LQ+ L+L+AID K GGY+VYSTCS +V E+EA++D+AL++RD
Sbjct: 430 TSKQYKDIQRASQLQRALLLSAIDAC----KIGGYVVYSTCSFLVEEDEAIVDFALRRRD 485
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
V++V GL FGR GF ++R HR+H SLE +R ++PHVHNMDGFF+ KLKK+S+S
Sbjct: 486 VQVVEMGLPFGRPGFTKYRHHRYHDSLELSRHYFPHVHNMDGFFICKLKKLSDS 539
>gi|390598058|gb|EIN07457.1| NOL1/NOP2/sun family RNA met [Punctularia strigosozonata HHB-11173
SS5]
Length = 419
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/352 (64%), Positives = 272/352 (77%), Gaps = 3/352 (0%)
Query: 37 IKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIE 96
++E VRVL NF + G +R EYV QL D+ SYYGYN+FL L +FP E +E E
Sbjct: 1 MRECVRVLGNFAKRGETGRARTEYVDQLVSDIASYYGYNDFLAEKLFSLFPVAEAIEFFE 60
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
+ E PRP+ +RTNTL+TRRRDLA LINRGVNL+P+ KW+ VGL V++S VPIGATPEY+
Sbjct: 61 ANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGATPEYL 120
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
AG YMLQ+ASSFLPV+AL+PQ ERV+DMA+APGGKTT++AALM+NTG+I+AN+ +R
Sbjct: 121 AGHYMLQAASSFLPVIALSPQPNERVLDMASAPGGKTTHMAALMQNTGIIFANDATKART 180
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
KSLTAN+HR+G N IVC+YDG E PKV+G DRVLLDAPCSGTGVISKD SVK +KS
Sbjct: 181 KSLTANVHRLGCKNVIVCSYDGREFPKVIG--GFDRVLLDAPCSGTGVISKDASVKVNKS 238
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKL 335
D S+LQKQLIL AID V S +GGY+VYSTCS+ V ENEAV+DYALKKR VKL
Sbjct: 239 DRDFALLSHLQKQLILCAIDSVSPTSATGGYVVYSTCSVTVDENEAVVDYALKKRPHVKL 298
Query: 336 VPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
V GL+FG GF +FR +FH S++ TRRFYPHVHNMDGF+VAK K SK
Sbjct: 299 VDTGLEFGVPGFTKFRGKQFHESVKLTRRFYPHVHNMDGFYVAKFKVGKPSK 350
>gi|340522301|gb|EGR52534.1| predicted protein [Trichoderma reesei QM6a]
Length = 688
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/390 (53%), Positives = 281/390 (72%), Gaps = 11/390 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L++RI + +RVL +F +L+++G SR EY QL D+ YYGY+ +L L +F
Sbjct: 229 PDLQLLRQRITDNIRVLDDFANLAEEGRSRAEYTAQLLKDICGYYGYSPYLAEKLFNLFT 288
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL ++++ V
Sbjct: 289 PREAFAFFEANEMPRPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQIFETNV 348
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y++Q+A+SFLPVMAL+PQ ERV+DMA+APGGKTTY +A+M NTG+++
Sbjct: 349 PLGATPEYLAGHYIIQAAASFLPVMALSPQPNERVLDMASAPGGKTTYCSAMMNNTGVVF 408
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+ R+GV N IVC+YDG E P+V+G DRVLLDAPCSGTGVISK
Sbjct: 409 ANDPNKERAKGLIGNVARLGVRNVIVCSYDGREFPRVMG--GFDRVLLDAPCSGTGVISK 466
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K +D ++QKQL+L+AID V+ S++GG++VYSTCS+ ENEAV++YA
Sbjct: 467 DPSVKTNKDEKDFISLPHMQKQLLLSAIDSVNHASETGGFLVYSTCSVTTEENEAVVNYA 526
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +VKLV G+ FG++GF F +FHPSL+ TRRFYPH HN+DGF+VAK +K+
Sbjct: 527 LSRRPNVKLVDTGIPFGKEGFTSFMGKKFHPSLKLTRRFYPHAHNIDGFYVAKFQKI--- 583
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKKTE 416
GP P + +S + D + E
Sbjct: 584 -----GPTPPNAIGAAGKKSGGAAADAEVE 608
>gi|302915517|ref|XP_003051569.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Nectria haematococca mpVI
77-13-4]
gi|256732508|gb|EEU45856.1| hypothetical protein NECHADRAFT_38896 [Nectria haematococca mpVI
77-13-4]
Length = 673
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/422 (52%), Positives = 289/422 (68%), Gaps = 20/422 (4%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F +LS+ G SR EY QL D+ +YYGY+E+L L +F
Sbjct: 233 PDLQLLRTRITETIRVLDDFANLSEDGRSRVEYTTQLIKDICAYYGYSEYLAEKLFNLFT 292
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 293 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESNV 352
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLP MAL PQE ERV+DMAAAPGGKTTY+AA+MKNTG+I
Sbjct: 353 PLGATPEYLAGHYILQAASSFLPCMALEPQENERVLDMAAAPGGKTTYMAAMMKNTGVIV 412
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+G N +V NYD E PK +G DRVLLDAPCSGTGVI+K
Sbjct: 413 ANDPNKARAKGLIGNIHRLGTRNVVVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAK 470
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + ++QKQL+LAAID V+ SK+GGYIVYSTCS+ V ENE V+ YA
Sbjct: 471 DPSVKTNKTERDFMQLPHIQKQLVLAAIDSVNHASKTGGYIVYSTCSVTVEENEQVVQYA 530
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM--- 383
L +R +V+LV GL FG++GF + +F PS+ TRR+YPH +N+DGFFVAK K+
Sbjct: 531 LSRRPNVRLVESGLPFGKEGFTSYMGKKFDPSMRHTRRYYPHTYNVDGFFVAKFHKIGPT 590
Query: 384 ----SNSKKTSAGPQ----------PSETVEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
S + S+GP P T + + P+S ++ +E+ ++ M+K
Sbjct: 591 PLKSSAPRDRSSGPADEEEEVIDRTPIPTDDDEEPKSKANDDFGGWDEDEDKEYMEKGKR 650
Query: 430 KA 431
A
Sbjct: 651 NA 652
>gi|322705288|gb|EFY96875.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium anisopliae
ARSEF 23]
Length = 659
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/400 (55%), Positives = 280/400 (70%), Gaps = 17/400 (4%)
Query: 5 IREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQL 64
I +E DE T + PDL L+ RI E +RVL +F +L++ G SR EY QL
Sbjct: 210 IDDEDDELSAKTSALLA------PDLQLLRTRITENIRVLDDFANLAEDGRSRSEYTAQL 263
Query: 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN 124
D+ +YYGY+E+L L +F P E E+ E RP+ +RTNTL+T RRDLA LIN
Sbjct: 264 IKDVCAYYGYSEYLAEKLYNLFTPREAFAFFEANETARPVVIRTNTLRTHRRDLAQALIN 323
Query: 125 RGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
RGV L+P+ KWSKVGL V++S VP+GATPEY+AG Y+LQ+ASSFLP MAL PQE ERV+D
Sbjct: 324 RGVTLEPVGKWSKVGLQVFESSVPLGATPEYLAGHYILQAASSFLPCMALDPQENERVLD 383
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAAAPGGKTTY+AA+MKNTG+I AN+ +R K L N+HR+G N IV NYD E PK
Sbjct: 384 MAAAPGGKTTYMAAMMKNTGVIIANDPNKARAKGLIGNIHRLGARNVIVSNYDAREFPKP 443
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
+G DRVLLDAPCSGTGVI+KD SVKT+K+ D + + QKQL+LAAID V+ +SKS
Sbjct: 444 MG--GFDRVLLDAPCSGTGVIAKDPSVKTNKTELDFMQLPHTQKQLLLAAIDSVNHSSKS 501
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
GGYIVYSTCS+ + ENE V+ YAL++R +VKLV GL FG++GF F +F PSL TR
Sbjct: 502 GGYIVYSTCSVTIEENEQVVQYALRRRPNVKLVDTGLAFGKEGFTSFMGKKFDPSLRLTR 561
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQT 403
R+YPH +N+DGF+VAK KK+ GP P++ T
Sbjct: 562 RYYPHAYNVDGFYVAKFKKI--------GPTPAQAPRDNT 593
>gi|402085166|gb|EJT80064.1| nucleolar protein NOP2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 715
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 274/370 (74%), Gaps = 15/370 (4%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + VRVL +F L+++G SR EY QL D+ +YYGY+E+L L+++FP
Sbjct: 237 PDLQMLRIRITDTVRVLEDFTKLAEEGHSRAEYSNQLLKDICAYYGYSEYLAEKLMQLFP 296
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
E E+ E PRP+ +RTNTL+T RRDLA L+NRGV L+P+ KWSKVGL ++D+ V
Sbjct: 297 AREAFAFFEANETPRPVVIRTNTLRTSRRDLAQALVNRGVTLEPVGKWSKVGLQIFDANV 356
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+ G Y+LQ+ASSFLPVMAL PQE ERV+DMAAAPGGKTT+ AALMKNTG+I
Sbjct: 357 PLGATPEYLGGHYILQAASSFLPVMALCPQEGERVLDMAAAPGGKTTHCAALMKNTGVII 416
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ SR K L N+HR+G N IV NYD E+P ++G DRVLLDAPCSGTGVI+K
Sbjct: 417 ANDPSKSRAKGLIGNIHRLGAKNVIVSNYDAREIPTLMG--GFDRVLLDAPCSGTGVIAK 474
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + ++QKQL+LAAID ++KSGGY+VYSTCS+ V ENE V++YA
Sbjct: 475 DPSVKTNKTELDFMQLPHIQKQLLLAAID----STKSGGYLVYSTCSVTVEENEQVVNYA 530
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +V+L+ GL FG++GF F +FHPSL+ TRR+YPH +NMDGF+VAK KK
Sbjct: 531 LSRRPNVELLETGLPFGKEGFTNFMGKKFHPSLKLTRRYYPHTYNMDGFYVAKFKK---- 586
Query: 387 KKTSAGPQPS 396
GP P+
Sbjct: 587 ----TGPTPA 592
>gi|340502431|gb|EGR29121.1| nucleolar protein 1, putative [Ichthyophthirius multifiliis]
Length = 479
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/360 (56%), Positives = 279/360 (77%), Gaps = 6/360 (1%)
Query: 23 EKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGAL 82
+K PDL L +I +I+ +LSNF + +++ SR+ + +L+ L YY YN LI
Sbjct: 111 QKDGQPDLAILNMKINDILHILSNFNENNKEKRSRQSILDELQTYLMQYYNYNRDLINLF 170
Query: 83 VEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV 142
+ MF P EL++ +ES E RP+ +RTNTLKTRR++LA +L RGVNLD L++W+KVGL +
Sbjct: 171 MSMFNPNELVQFLESNETQRPVTIRTNTLKTRRKELAQILAQRGVNLDSLAEWTKVGLKI 230
Query: 143 YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN 202
YDS+VPIGATPEY+AG+YMLQSASSF+PV+ALAPQ+ E+++DM+AAPGGKTTY+A LMKN
Sbjct: 231 YDSKVPIGATPEYLAGYYMLQSASSFIPVIALAPQQNEKILDMSAAPGGKTTYVAQLMKN 290
Query: 203 TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262
TG+++AN++K+ R K+L N+ RMG+TN +V NYDG +LPK +N DRVLLDAPC+G
Sbjct: 291 TGILFANDIKSERNKALIYNVQRMGITNCVVTNYDGRKLPKC--INNFDRVLLDAPCTGL 348
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G+IS+D+S+K +K L D+ K S+LQ++LIL+AID K GGYIVYSTCS+ V ENE+
Sbjct: 349 GIISRDQSIKATKQLIDVYKHSHLQRELILSAIDCC----KKGGYIVYSTCSVSVQENES 404
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
VIDYALK R VKLV G+D G +G++++++ RF PS++K RR PH+HNMDGFFVAK +K
Sbjct: 405 VIDYALKNRFVKLVDTGVDVGEEGYIKYQDKRFDPSIKKCRRILPHIHNMDGFFVAKFEK 464
>gi|397575761|gb|EJK49876.1| hypothetical protein THAOC_31203 [Thalassiosira oceanica]
Length = 716
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/411 (51%), Positives = 293/411 (71%), Gaps = 26/411 (6%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQ--PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRK 58
++ I + ++ F LPT EE+E+++ + PP L+ RI+EI+ VL++FK+ + G SR
Sbjct: 217 LRRTITQNTEVFHLPTAEELEDDEDRVVPPS--ELRARIEEILSVLADFKNRREAGRSRS 274
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
EYV++L D+ +GY + L+ + MF P E +E +E+ +K RP+ +R NTLK RR+DL
Sbjct: 275 EYVERLAADMAELFGYLQELVDYFLSMFGPSECLEFLEASDKSRPLVVRVNTLKARRKDL 334
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
A L+ RGV LDPL+ WSKVGL +Y+S VPIGATPEY+AG YMLQSA+S PVMALAPQ
Sbjct: 335 AAALMKRGVRLDPLAPWSKVGLKIYESTVPIGATPEYLAGHYMLQSAASMCPVMALAPQP 394
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
+RV+DM+AAPGGKT+YIA LM+N G++ AN++K R K+ ANLHR+GV N + C YDG
Sbjct: 395 GDRVMDMSAAPGGKTSYIAQLMRNKGVVIANDLKPERQKATVANLHRLGVRNVVTCCYDG 454
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
+L + N+ DR+LLDAPCSG GVIS+D SVK +++ D+++C++LQK+L++AAID +
Sbjct: 455 RKLGSQM-RNSFDRILLDAPCSGLGVISRDPSVKIQRTIPDVKRCAHLQKELLVAAIDSL 513
Query: 299 DANS-KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQ------------ 345
+ S K GG++VYSTCS+ + ENE V++Y L KRDVK+V GLDFG+
Sbjct: 514 NHKSKKGGGFMVYSTCSVAIAENEEVVNYLLSKRDVKIVETGLDFGKSFASLFLLCYIAD 573
Query: 346 --------GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK 388
GF RF RFHPSL TRRFYPHV+NMDGF+VAK++K+S+ K
Sbjct: 574 LPRRAGKPGFTRFEHKRFHPSLALTRRFYPHVNNMDGFYVAKIQKLSDKHK 624
>gi|429862273|gb|ELA36929.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 727
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/383 (57%), Positives = 275/383 (71%), Gaps = 9/383 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F +L ++G SR EY QL D+ +YYGY+E+L L +F
Sbjct: 225 PDLQLLRTRITENIRVLDDFANLHEEGRSRAEYTSQLIKDICAYYGYSEYLAEKLFNLFS 284
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ LRTNTL+T RRDLA LI RGV L+P+ KWSKVGL V++S V
Sbjct: 285 PREAFAFFEANESARPVVLRTNTLRTHRRDLAQALIGRGVTLEPVGKWSKVGLQVFESNV 344
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ER +DMAAAPGGKTT++AA+MKNTG+I
Sbjct: 345 PLGATPEYLAGHYILQAASSFLPVMALEPQENERCLDMAAAPGGKTTHMAAMMKNTGVIV 404
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+HR+G N +V NYD E PK +G DRVLLDAPCSGTGVI+K
Sbjct: 405 ANDPSKQRAKGLIGNIHRLGARNVVVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAK 462
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + QKQLILAAID V+ +SK+GGYIVYSTCS+ V ENEAV+ YA
Sbjct: 463 DASVKTNKTERDFMLLPHTQKQLILAAIDSVNHHSKTGGYIVYSTCSVTVEENEAVVQYA 522
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +VKLV L FGR+GF F +F PSL+ TRR+YPH +N+DGFFVAK +K+ +
Sbjct: 523 LSRRPNVKLVDTNLPFGREGFTSFMGKKFDPSLKLTRRYYPHTYNVDGFFVAKFQKIGPT 582
Query: 387 KKTSA-----GPQPSETVEQQTP 404
+A GP E V+ +TP
Sbjct: 583 PDKAASRDRSGPIAGEPVD-KTP 604
>gi|169626371|ref|XP_001806586.1| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15]
gi|160705823|gb|EAT76170.2| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15]
Length = 725
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/377 (57%), Positives = 276/377 (73%), Gaps = 12/377 (3%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
D+ L+ R+ + VRVL +FK+L++ G SR EY Q+ D+ +YYGY+EFL L+ +FP
Sbjct: 223 DVQLLRTRLNDTVRVLDDFKNLAEPGRSRTEYRAQMLKDICAYYGYSEFLADKLLNLFPA 282
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E E+ E PRPI +RTNTL+T RR+LA LINRGV L+P+ KWSKVGL +++SQVP
Sbjct: 283 REAFAFFEANETPRPIVIRTNTLRTHRRELAQSLINRGVQLEPVGKWSKVGLQIFESQVP 342
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DM AAPGGKTT+IAALMKNTG I+A
Sbjct: 343 LGATPEYLAGHYILQAASSFLPVMALAPQEHERVLDMTAAPGGKTTHIAALMKNTGCIFA 402
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N+ R K L N+HR+GV N++VC+Y E P+V+G DRVLLDAPCSGTGVI+KD
Sbjct: 403 NDANKDRAKGLIGNIHRLGVRNSVVCHYSALEFPRVMG--GFDRVLLDAPCSGTGVIAKD 460
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
SVKT+K+ D K +LQKQLIL+AID VD +SK+GGYIVYSTCS+ V ENE VI YAL
Sbjct: 461 ASVKTNKTEADFMKLPHLQKQLILSAIDSVDHHSKTGGYIVYSTCSVTVEENEQVIQYAL 520
Query: 329 KKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
KR +VKLV GL FG++GF ++ R+YPH +N+DGFFVAK KK+ +
Sbjct: 521 NKRPNVKLVETGLTFGKEGFT---------NIAGKVRYYPHTYNVDGFFVAKFKKIGPTP 571
Query: 388 KTSAGPQPSETVEQQTP 404
+ G S + ++Q P
Sbjct: 572 ANAVGVNESTSNKKQKP 588
>gi|407852470|gb|EKG05950.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 538
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/359 (57%), Positives = 275/359 (76%), Gaps = 6/359 (1%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E +RVLSNFK+ ++ +R EYV L+ D+ + Y YN+FL A++ +FPP E +
Sbjct: 123 LRDRIQETIRVLSNFKEEREEERTRGEYVDLLRSDIMALYEYNDFLTDAVLLLFPPAEAV 182
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E E+ EKPRP +R NTLK +RRDL L+ RG++++PL KWSKVGL V++S VPI T
Sbjct: 183 EFFEAMEKPRPTTIRVNTLKAKRRDLVQALLKRGMHVEPLEKWSKVGLQVFESNVPIAGT 242
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQSA SFLPVMALAPQEKERV+DMAAAPGGKTTYIA LMKNTG+++AN+M
Sbjct: 243 VEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLMKNTGVLFANDMS 302
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R K+L ANL R+GVTNT+V NYDG K+ + DRVLLDAPC+G+G+IS+D+S+K
Sbjct: 303 EPRTKALNANLQRLGVTNTVVTNYDGAGYNKI--MKNFDRVLLDAPCTGSGIISRDKSIK 360
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
+SK ED+Q+ S Q+ L+L+AID V K GGY+VYSTCS +V ENEAV+++A+++R
Sbjct: 361 SSKHYEDVQRASQQQRTLLLSAIDAV----KVGGYVVYSTCSFLVEENEAVVEFAVRRRH 416
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
V++V GL FGR G ++R HRFH ++ +RRF+PHVHNMDGFFV KLKK+S+ + A
Sbjct: 417 VEIVEMGLPFGRPGLTKYRHHRFHEKMQCSRRFFPHVHNMDGFFVCKLKKLSDDCRPEA 475
>gi|358389714|gb|EHK27306.1| hypothetical protein TRIVIDRAFT_114247, partial [Trichoderma virens
Gv29-8]
Length = 684
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/387 (54%), Positives = 280/387 (72%), Gaps = 12/387 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L++RI + +RVL +F +L+++G SR EY QL D+ YYGY+ +L L +F
Sbjct: 227 PDLQLLRQRITDTIRVLDDFANLAEEGRSRAEYTAQLLKDICGYYGYSLYLAEKLFNLFT 286
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL ++++ V
Sbjct: 287 PREAFAFFEANEMARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQIFEANV 346
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y++Q+A+SFLPVMAL+PQ ERV+DMA+APGGKTTY +A+M NTG+++
Sbjct: 347 PLGATPEYLAGHYIIQAAASFLPVMALSPQPNERVLDMASAPGGKTTYCSAMMNNTGIVF 406
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+ R+GV N IVC+YDG E P+V+G DRVLLDAPCSGTGVISK
Sbjct: 407 ANDPNKERAKGLIGNVARLGVRNVIVCSYDGREFPRVMG--GFDRVLLDAPCSGTGVISK 464
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K +D ++QKQL+L+AID V+ S++GG++VYSTCS+ V ENE+V+ YA
Sbjct: 465 DPSVKTNKDEKDFISLPHMQKQLLLSAIDSVNHASETGGFLVYSTCSVTVEENESVVAYA 524
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM--- 383
L +R +VKLV G+ FG++GF + +FHPSL+ TRRFYPH HN+DGF+VAK +K+
Sbjct: 525 LSRRPNVKLVDAGIPFGKEGFTSYMGKKFHPSLKLTRRFYPHAHNIDGFYVAKFQKVGPT 584
Query: 384 ------SNSKKTSAGPQPSETVEQQTP 404
+ KK SA E V +TP
Sbjct: 585 PPNAIGAAGKKVSAAADADEEVVDRTP 611
>gi|407404207|gb|EKF29767.1| nucleolar protein, putative [Trypanosoma cruzi marinkellei]
Length = 555
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/353 (59%), Positives = 273/353 (77%), Gaps = 6/353 (1%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E VRVLSNFK+ ++ +R EYV+ L+ D+ + Y YNEFL A++ +FPP E +
Sbjct: 138 LRDRIQETVRVLSNFKEEREEERTRGEYVELLRSDIMALYEYNEFLTDAILLLFPPAEAV 197
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E E+ EKPRP +R NTLK +RRDL L+ RG++++PL KWSKVGL V++S VPI T
Sbjct: 198 EFFEAMEKPRPTTIRVNTLKAKRRDLVQALLKRGMHVEPLEKWSKVGLQVFESNVPIAGT 257
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQSA SFLPVMALAPQEKERV+DMAAAPGGKTTYIA LMKNTG ++AN++
Sbjct: 258 IEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLMKNTGALFANDVS 317
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R K+L ANL R+GVTNT+V NYDG K+ + DRVLLDAPC+G+G+IS+D+S+K
Sbjct: 318 EPRTKALNANLQRLGVTNTVVTNYDGVGYNKI--IKNFDRVLLDAPCTGSGIISRDKSIK 375
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
TSK ED+Q+ S Q+ L+L+AID V K GGY+VYSTCS +V ENEAV+++A+++R
Sbjct: 376 TSKHYEDVQRASQQQRTLLLSAIDAV----KVGGYVVYSTCSFLVEENEAVVEFAVRRRH 431
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
V++V GL FGR G ++R HRFH ++ +RRF+PHVHNMDGFFV KLKK+S+
Sbjct: 432 VEIVEMGLPFGRPGLTKYRHHRFHEKMQCSRRFFPHVHNMDGFFVCKLKKLSD 484
>gi|219112587|ref|XP_002178045.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410930|gb|EEC50859.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 528
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/389 (53%), Positives = 284/389 (73%), Gaps = 5/389 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQ--PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRK 58
M+ +R + + LPT EE++ + + PP ++ I+ I+ VL++FK + G +RK
Sbjct: 142 MRRTVRLHTSVYHLPTTEELQRDVDRVVPPS--EIRSHIESILEVLADFKTRREPGRARK 199
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
EY+ QL L L GY LI + MF P E +E + + +K RP+ +R NTLKTRR+DL
Sbjct: 200 EYIDQLGLFLAEIQGYLPELIEYFLTMFGPAETVEFVNASDKTRPLVIRANTLKTRRKDL 259
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
A L+ RGV LDPL+ WSKVGL + +S VPIGATPEY++G YMLQSA+S PV+ALAP+
Sbjct: 260 AAALMKRGVTLDPLANWSKVGLKIMESPVPIGATPEYLSGMYMLQSAASMCPVLALAPEP 319
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
KERV+DM+AAPGGKT+YIA LM+NTG I AN++K R K+ AN+HR+GV N I C +DG
Sbjct: 320 KERVLDMSAAPGGKTSYIAQLMRNTGTIVANDLKPERQKATVANMHRLGVKNVIACAHDG 379
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
++ V+ N DR+LLDAPCSG GVIS+D SVK +++ D+ +C++LQK+L+LAAID +
Sbjct: 380 RKM-GVMFKNRFDRILLDAPCSGLGVISRDPSVKVQRTIADVNQCAHLQKELLLAAIDAL 438
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPS 358
+ SGG++VYSTCS+ V ENE V++YAL KRD+K+V GLDFG+ GF R+ + RFH S
Sbjct: 439 KSKGTSGGFMVYSTCSVAVAENEEVVNYALSKRDIKIVDTGLDFGKPGFTRYMQKRFHSS 498
Query: 359 LEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
+ TRRFYPHVHNMDGFFV K++K+S+S+
Sbjct: 499 VALTRRFYPHVHNMDGFFVCKIQKLSDSR 527
>gi|402225311|gb|EJU05372.1| NOL1/NOP2/sun family RNA met [Dacryopinax sp. DJM-731 SS1]
Length = 573
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/389 (59%), Positives = 284/389 (73%), Gaps = 7/389 (1%)
Query: 12 FRLPTKEEIEEEKQ--QPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG 69
F LP+ E+ E E P D+ LQ R++E V+VL +FK + SR EYVQQL D+
Sbjct: 125 FALPSAEQQEAEASGSAPVDVNELQLRMRECVKVLGDFKKFAAPNRSRSEYVQQLLADIA 184
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
SYYGYN FL L ++FP E +E ES E PRP+ +RTNTL+TRRR+LA LINRGVNL
Sbjct: 185 SYYGYNAFLAEKLFDLFPVAEAIEFFESNELPRPVTIRTNTLRTRRRELAQALINRGVNL 244
Query: 130 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAP 189
+P+ KWSKVGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+AL PQ ERV+DMA+AP
Sbjct: 245 EPIGKWSKVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALDPQPGERVLDMASAP 304
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
GGKTTYI+ALM+NTG+++AN+ R K LTAN+HR+G N +VCNYDG E PKV+G
Sbjct: 305 GGKTTYISALMQNTGVVFANDANKERTKGLTANVHRLGCRNVVVCNYDGREFPKVMG--G 362
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
DRVLLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID V +S + +V
Sbjct: 363 FDRVLLDAPCSGTGVISKDASVKQNKSARDFTLLSHLQKQLILCAIDSVTPSSSA--TVV 420
Query: 310 YSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
YSTCS+ V ENE+VI YAL+KR V+LV GL+FGR+GF FR F + KTRRFYPH
Sbjct: 421 YSTCSVTVDENESVIAYALRKRPHVRLVDTGLEFGREGFKAFRGKTFGEEMGKTRRFYPH 480
Query: 369 VHNMDGFFVAKLKKMSNSKKTSAGPQPSE 397
V+NMDGFFVAKL+ K+ + SE
Sbjct: 481 VNNMDGFFVAKLRVGKPGKRAEQAREESE 509
>gi|66812796|ref|XP_640577.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
gi|60468601|gb|EAL66604.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
Length = 647
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/357 (57%), Positives = 272/357 (76%), Gaps = 3/357 (0%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DLP + +RIK++++ L NF ++G SR+ Y+ +L+ D+ +Y+GY+++L +++F
Sbjct: 210 DLPMVYQRIKDVIQTLENFGQQRKQGISRQTYMDRLREDICTYFGYSQWLAEVFLKIFNA 269
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E +E E+ E RP+ +R NTLK RR+DLA+ LI RGV+L+P+ KWS+VGL +YD+QV
Sbjct: 270 SEALEFFEANETHRPLTIRANTLKVRRKDLAEALIARGVHLEPI-KWSQVGLTIYDTQVA 328
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+AG Y+ QSASSFLPV+ALAPQ ERV+DM A+PGGKTTYIAA+MKNTG + A
Sbjct: 329 IGATPEYLAGQYIQQSASSFLPVLALAPQPNERVLDMCASPGGKTTYIAAMMKNTGTLVA 388
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N++ R+KSL AN+HR+GV N +V N DG + P VL + DRVL+DAPC G GVISKD
Sbjct: 389 NDVNKDRIKSLVANIHRLGVKNCMVSNLDGRQYPSVL--SGFDRVLVDAPCVGLGVISKD 446
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
+K SKS +D+ C++ QK+L+L AID VDA+S +GG IVYSTCS+ V ENEAV+DYAL
Sbjct: 447 PQIKISKSEQDVITCTHTQKELLLKAIDSVDASSPTGGIIVYSTCSLTVEENEAVVDYAL 506
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ RDV +V ++FG GF FRE RFHPSL T+R+YPH HNMDGF+VAKLKK SN
Sbjct: 507 RNRDVIVVDTTIEFGVDGFTSFRESRFHPSLALTKRYYPHTHNMDGFYVAKLKKRSN 563
>gi|116181006|ref|XP_001220352.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Chaetomium globosum CBS
148.51]
gi|88185428|gb|EAQ92896.1| hypothetical protein CHGG_01131 [Chaetomium globosum CBS 148.51]
Length = 722
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/457 (50%), Positives = 299/457 (65%), Gaps = 38/457 (8%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F +L++ G SR EY QL D+ +YYGYNE +FP
Sbjct: 239 PDLQMLRTRITETIRVLEDFSNLAEDGRSRAEYTNQLLKDVCAYYGYNE-------NLFP 291
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 292 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESTV 351
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL PQE ER +DMAAAPGGKTT+++ALMKNTG+++
Sbjct: 352 PLGATPEYLAGHYILQAASSFLPVMALCPQENERCLDMAAAPGGKTTHMSALMKNTGVVF 411
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ SR K L N+HR+G N IVCNYD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 412 ANDPSKSRAKGLIGNIHRLGARNVIVCNYDAREFPRVMG--GFDRVLLDAPCSGTGVIAK 469
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN--EAVID 325
D SVKT++ +D + + QKQL+LAAID V+ SK+GGY+VYSTCS+ + EN E V+
Sbjct: 470 DPSVKTNRDEKDFIQLPHTQKQLLLAAIDSVNHASKTGGYVVYSTCSVAIEENFSEQVVA 529
Query: 326 YALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
YAL +R +VKLV GL FG++GF + FHPSL+ TRR+YPH++N+DGFFVAK +K+
Sbjct: 530 YALSRRPNVKLVETGLPFGKEGFTSYMGKAFHPSLKLTRRYYPHLYNVDGFFVAKFQKV- 588
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGLAEN 444
GP V ++NG K + + +MK A ++ KT AE
Sbjct: 589 -------GPTAGNAV--------LANGKK----DKDAAIMKAADENDGEVIDKTPVAAEG 629
Query: 445 GNVESPSNEKRRKKRKFPSREEISKVREEKRKTLREK 481
E + F E+ + KR +R +
Sbjct: 630 ------EEEAKDDFGGFDDNEDEDYIERAKRNAMRRR 660
>gi|46123731|ref|XP_386419.1| hypothetical protein FG06243.1 [Gibberella zeae PH-1]
Length = 678
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/385 (56%), Positives = 276/385 (71%), Gaps = 10/385 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F LS++G SR EYV QL D+ SYYGY+ +L L +F
Sbjct: 237 PDLQLLRTRITENIRVLDDFAKLSEEGRSRTEYVSQLLKDICSYYGYSAYLAEKLFNLFT 296
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 297 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSV 356
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLP MAL PQE ERV+DMA+APGGKTTY++A+MKNTG++
Sbjct: 357 PLGATPEYLAGHYILQAASSFLPCMALDPQENERVLDMASAPGGKTTYMSAMMKNTGIVV 416
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+G N IV NYD E PK +G DRVLLDAPCSGTGVI+K
Sbjct: 417 ANDPNKARAKGLIGNIHRLGCRNVIVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAK 474
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + +LQKQL+LAAID V+ SK+GGYIVYSTCS+ V ENE V++YA
Sbjct: 475 DPSVKTNKTELDFMQLPHLQKQLLLAAIDSVNHASKTGGYIVYSTCSVTVEENEQVVNYA 534
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM--- 383
L +R +V+LV GL FG++GF + +F PS+ TRRFYPH N+DGF+VAK +K+
Sbjct: 535 LSRRPNVRLVDAGLTFGKEGFTSYMGKKFDPSVSLTRRFYPHSLNVDGFYVAKFQKIGPT 594
Query: 384 ----SNSKKTSAGPQPSETVEQQTP 404
SN++ + GP +TP
Sbjct: 595 PASASNARDRTTGPADETEFIDKTP 619
>gi|358401369|gb|EHK50675.1| hypothetical protein TRIATDRAFT_157738 [Trichoderma atroviride IMI
206040]
Length = 681
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/373 (54%), Positives = 273/373 (73%), Gaps = 11/373 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L++RI + +RVL F L++ G SR EY QL D+ +YYGY+ +L L +F
Sbjct: 228 PDLQLLRQRITDTIRVLDEFAKLAEDGRSRAEYTAQLLKDICAYYGYSPYLAEKLFNLFT 287
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL ++++ V
Sbjct: 288 PREAFAFFEANEMPRPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQIFEANV 347
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y++Q+A+SFLPVMAL+PQ ERV+DMA+APGGKTTY +A+M NTG+++
Sbjct: 348 PLGATPEYLAGHYIIQAAASFLPVMALSPQPNERVLDMASAPGGKTTYCSAMMNNTGMVF 407
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+ R+GV N IVC+YDG E P+V+G DRVLLDAPCSGTGVISK
Sbjct: 408 ANDPNKQRAKGLIGNVARLGVRNVIVCSYDGREFPRVMG--GFDRVLLDAPCSGTGVISK 465
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K +D ++QKQL+L+AID V+ S++GG++VYSTCS+ + ENE+V+ YA
Sbjct: 466 DPSVKTNKDEKDFISLPHMQKQLLLSAIDSVNHASETGGFLVYSTCSVTIEENESVVAYA 525
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +V+LV G+ FG++GF + RFHPSL+ TRRFYPH HN+DGF+VAK +K+
Sbjct: 526 LSRRPNVRLVDAGIPFGKEGFTSYMGKRFHPSLKLTRRFYPHAHNIDGFYVAKFQKI--- 582
Query: 387 KKTSAGPQPSETV 399
GP P +
Sbjct: 583 -----GPTPPNAI 590
>gi|408399720|gb|EKJ78813.1| hypothetical protein FPSE_00956 [Fusarium pseudograminearum CS3096]
Length = 679
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/385 (56%), Positives = 276/385 (71%), Gaps = 10/385 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F LS++G SR EYV QL D+ SYYGY+ +L L +F
Sbjct: 238 PDLQLLRTRITENIRVLDDFAKLSEEGRSRTEYVSQLLKDICSYYGYSAYLAEKLFNLFT 297
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 298 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSV 357
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLP MAL PQE ERV+DMA+APGGKTTY++A+MKNTG++
Sbjct: 358 PLGATPEYLAGHYILQAASSFLPCMALDPQENERVLDMASAPGGKTTYMSAMMKNTGIVV 417
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+G N IV NYD E PK +G DRVLLDAPCSGTGVI+K
Sbjct: 418 ANDPNKARAKGLIGNIHRLGCRNVIVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAK 475
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + +LQKQL+LAAID V+ SK+GGYIVYSTCS+ V ENE V++YA
Sbjct: 476 DPSVKTNKTELDFMQLPHLQKQLLLAAIDSVNHASKTGGYIVYSTCSVTVEENEQVVNYA 535
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM--- 383
L +R +V+LV GL FG++GF + +F PS+ TRRFYPH N+DGF+VAK +K+
Sbjct: 536 LSRRPNVRLVDAGLTFGKEGFTSYMGKKFDPSVSLTRRFYPHSLNVDGFYVAKFQKIGPT 595
Query: 384 ----SNSKKTSAGPQPSETVEQQTP 404
SN++ + GP +TP
Sbjct: 596 PASASNARDRTTGPADETEFIDKTP 620
>gi|307110087|gb|EFN58324.1| hypothetical protein CHLNCDRAFT_30164, partial [Chlorella
variabilis]
Length = 399
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/315 (66%), Positives = 247/315 (78%), Gaps = 21/315 (6%)
Query: 78 LIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK 137
++ AL+ +F E +ELIE+ E PRP+ LRTNTLKTRRR+LA LINRGVNLDP+ WSK
Sbjct: 1 MVDALLSLFSVGEALELIEAQEVPRPVTLRTNTLKTRRRELAGALINRGVNLDPIGNWSK 60
Query: 138 VGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIA 197
VGLVVY+SQVP+GATPEYMAG YMLQ ASSFLP MALAPQE E+V+D+AAAPGGKTTY+A
Sbjct: 61 VGLVVYESQVPVGATPEYMAGHYMLQGASSFLPCMALAPQEGEQVVDVAAAPGGKTTYLA 120
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257
ALM+NTG+++ANE+ RL SLTANL RMGVTNTIVCNYDG +LP+VLG +VDRVLLDA
Sbjct: 121 ALMRNTGVLFANEINKERLTSLTANLQRMGVTNTIVCNYDGRQLPRVLGERSVDRVLLDA 180
Query: 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317
PCSGTGVISKD +VK SL S +G +VYSTCS+MV
Sbjct: 181 PCSGTGVISKDPTVKVGGSL---------------------GLPSGAGVVVVYSTCSMMV 219
Query: 318 TENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
ENE V++YALK+RDVK+VPCGL+FGR GF+RFR+ RFHPSL + RRFYPH HN+DGFFV
Sbjct: 220 EENENVVNYALKRRDVKVVPCGLEFGRPGFIRFRDFRFHPSLAEARRFYPHAHNLDGFFV 279
Query: 378 AKLKKMSNSKKTSAG 392
KLKKMSN K + G
Sbjct: 280 CKLKKMSNKVKGTDG 294
>gi|358058763|dbj|GAA95726.1| hypothetical protein E5Q_02383 [Mixia osmundae IAM 14324]
Length = 762
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/356 (59%), Positives = 267/356 (75%), Gaps = 4/356 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQK-GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
PD+ + R++ R LSN+K L K G SR + D+ +YYGYN +L LVE+F
Sbjct: 346 PDVQAVSVRLQAGARALSNWKALGPKTGKSRADVYDAFINDVCAYYGYNRYLAEKLVELF 405
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
P E + +++ + PRPI +R NTLKTRRR+LA LINRGVNL+P+ KW+KVGL V++S
Sbjct: 406 PIDEAITFLDASDTPRPITIRANTLKTRRRELAQSLINRGVNLEPIGKWTKVGLQVFESP 465
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DM+AAPGGKTT++AA+++NTG++
Sbjct: 466 VPIGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMSAAPGGKTTFLAAMLQNTGVV 525
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
+AN+ R KSL N+ RMG N I+CN+DG E PKV+G DRVLLDAPCSGTGVIS
Sbjct: 526 FANDSNKHRTKSLAGNVARMGCKNVIICNHDGREFPKVMG--GFDRVLLDAPCSGTGVIS 583
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVK +KS D ++LQKQLIL+AID V +S +GGYIVYSTCS+ V ENE+V+DY
Sbjct: 584 KDPSVKVNKSARDFILLTHLQKQLILSAIDSVSPHSATGGYIVYSTCSVTVDENESVVDY 643
Query: 327 ALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
AL+KR VKLV GL+FG++G F+ F SL TRRFYPHV NMDGFFVAK+K
Sbjct: 644 ALRKRAHVKLVETGLEFGKEGHTSFKGKHFDNSLALTRRFYPHVQNMDGFFVAKIK 699
>gi|392576504|gb|EIW69635.1| hypothetical protein TREMEDRAFT_30413 [Tremella mesenterica DSM
1558]
Length = 678
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/389 (55%), Positives = 284/389 (73%), Gaps = 10/389 (2%)
Query: 1 MQLNIREESDE--FRLPTKEEI--EEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT- 55
+ N+ ++ D F LP E +E+ + L ++ R++ ++ V S ++ + G
Sbjct: 215 ISTNLEDDLDHQGFTLPAVERGGEQEDYEAGTSLKEVESRMRWLIGVCSGKQEKTSNGLP 274
Query: 56 --SRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT 113
SR +++ QL+ D+ +Y+GYN FL+ L+++F E + E+ E PRP+ +R NTL+T
Sbjct: 275 GRSRSDHLLQLQHDIATYFGYNLFLVNKLMKLFIVDEAIAFFEANESPRPVTIRANTLRT 334
Query: 114 RRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMA 173
RRRDLA L NRGV L+P+ KWSKVGL V++S VP+GATPEY+AG YMLQSASSFLPV+A
Sbjct: 335 RRRDLAQTLSNRGVVLEPIGKWSKVGLQVFESPVPVGATPEYLAGHYMLQSASSFLPVIA 394
Query: 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233
LAPQ +ER++DMA+APGGKTTYI+ALM+NTG+++AN+ R KSLTAN+HR+G N +V
Sbjct: 395 LAPQPEERILDMASAPGGKTTYISALMQNTGIVFANDSNKQRTKSLTANVHRLGCKNVVV 454
Query: 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA 293
CNYD E PKVLG DRVLLDAPCSGTGVISKD+SVK +K+ D Q ++LQKQL+L
Sbjct: 455 CNYDAREFPKVLG--GFDRVLLDAPCSGTGVISKDQSVKVNKTERDFQLLAHLQKQLLLC 512
Query: 294 AIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFRE 352
A+D V+ NS +GGY+VYSTCS+ V ENEAV+DYAL+KR KLV GL+FG +GF F
Sbjct: 513 ALDSVNPNSTTGGYVVYSTCSVTVDENEAVVDYALRKRPHCKLVDTGLEFGVEGFKAFEG 572
Query: 353 HRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
FH +L TRR+YPH HNMDGFFVAK K
Sbjct: 573 KTFHDNLSLTRRYYPHKHNMDGFFVAKFK 601
>gi|378727985|gb|EHY54444.1| ribosomal RNA small subunit methyltransferase F [Exophiala
dermatitidis NIH/UT8656]
Length = 717
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/395 (54%), Positives = 275/395 (69%), Gaps = 6/395 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL ++ R+ E +R+L NF L+ K SR EY+ QL D+ YYGY +L L +F
Sbjct: 230 PDLAMIRNRMTETIRILGNFSQLADKTKSRTEYIDQLLSDICVYYGYTPYLAEKLFSLFT 289
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ LRTNTL+T RR LA LINRGV L+P+ KWSKVGL V+++ V
Sbjct: 290 PAEAFAFFEANETPRPVVLRTNTLRTNRRTLAQALINRGVVLEPVGKWSKVGLQVFEAPV 349
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTYI+ALM+NTG+++
Sbjct: 350 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGKTTYISALMRNTGVVF 409
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIVCNYD + PKVLG DRVLLDAPCSGTGVI
Sbjct: 410 ANDANKQRAKGLIGNIHRLGCKNTIVCNYDAQKAFPKVLG--GFDRVLLDAPCSGTGVIG 467
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVKTSK+ D ++QKQL+LAAID D +SK+GGYIVYSTCS+ V ENEAV+ Y
Sbjct: 468 KDPSVKTSKNERDFLALPHMQKQLLLAAIDSTDHSSKTGGYIVYSTCSVTVEENEAVVQY 527
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L+KR +VK+V GL +FG +GF + +F + TRR++PH N+DGFFVAKLKK+
Sbjct: 528 VLRKRPNVKIVDTGLGNFGSEGFKSYMNKKFDDKMSLTRRYFPHRENVDGFFVAKLKKIG 587
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENS 419
K + + + P++ NGD K N
Sbjct: 588 PMPKNVGSANGGDAADAE-PKTARINGDAKAGANG 621
>gi|71408722|ref|XP_806747.1| nucleolar protein [Trypanosoma cruzi strain CL Brener]
gi|70870582|gb|EAN84896.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 538
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/359 (57%), Positives = 274/359 (76%), Gaps = 6/359 (1%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E +RVLSNFK+ ++ +R EYV L+ D+ + Y YNEFL A++ +FPP E +
Sbjct: 123 LRDRIQETIRVLSNFKEEREEERTRGEYVDLLRSDIMALYEYNEFLTDAVLLLFPPAEAV 182
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E E+ EKPRP +R NTLK +RRDL L+ RG++++PL KWSKVGL V++S VPI T
Sbjct: 183 EFFEAMEKPRPTTIRVNTLKAKRRDLVQALLKRGMHVEPLEKWSKVGLQVFESNVPIAGT 242
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQSA SFLPVMALAPQEKERV+DMAAAPGGKTTYIA LMKNTG+++AN++
Sbjct: 243 IEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLMKNTGVLFANDVS 302
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R K+L ANL R+GVTNT+V NYDG K+ + DRVLLDAPC+G+G+IS+D+S+K
Sbjct: 303 EPRTKALNANLQRLGVTNTVVTNYDGAGYNKI--MKNFDRVLLDAPCTGSGIISRDKSIK 360
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
+SK ED+Q+ S Q+ L+L+AID V K GGY+VYSTCS +V ENEAV+++A+++R
Sbjct: 361 SSKHYEDVQRASQQQRTLLLSAIDAV----KVGGYVVYSTCSFLVEENEAVVEFAVRRRH 416
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
V++V GL FGR G ++R HRF ++ +RRF+PHVHNMDGFFV KLKK+S+ + A
Sbjct: 417 VEIVEMGLPFGRPGLTKYRHHRFQEKMQCSRRFFPHVHNMDGFFVCKLKKLSDDCRPEA 475
>gi|340053400|emb|CCC47690.1| putative nucleolar protein [Trypanosoma vivax Y486]
Length = 552
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/399 (53%), Positives = 283/399 (70%), Gaps = 15/399 (3%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
L+ RI+E V VLSNFK+ ++G SR++Y+Q L+ DL + Y YN+FL +++ +F P E +
Sbjct: 135 LRDRIQETVHVLSNFKEEREEGRSREDYMQLLRSDLMALYEYNDFLTDSILLLFAPPEAV 194
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E E+ EKPRP +R NT+K +RRDL L+ RG+N++PL KWSKVGL V++S VPI T
Sbjct: 195 EFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAGT 254
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY+AG YMLQSA SFLPVMALAPQ ERV+D+AAAPGGKTTYIA LMKNTG+I+AN++
Sbjct: 255 VEYLAGHYMLQSAVSFLPVMALAPQPHERVLDLAAAPGGKTTYIAQLMKNTGVIFANDVS 314
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R KSL ANL R+GVTNTIV NYDG +V + DRVLLDAPC+G+G+IS+D+S+K
Sbjct: 315 EPRTKSLNANLQRLGVTNTIVTNYDGVGYERV--MKNFDRVLLDAPCTGSGIISRDKSIK 372
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
TSK ED+Q+ S LQ+ L+L+A+D + + GG+IVYSTCS +V ENEAV+D+ L+ R
Sbjct: 373 TSKHTEDVQRASQLQRDLLLSAVDAL----RVGGHIVYSTCSFLVEENEAVVDFVLRHRP 428
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK---- 388
V +V GL FGR G ++R HRFH L RR +PHVHNMDGFFV KL+K+SN +
Sbjct: 429 VTVVDTGLPFGRPGLTKYRHHRFHDKLHYARRLFPHVHNMDGFFVCKLRKLSNEHEQCET 488
Query: 389 -----TSAGPQPSETVEQQTPESNVSNGDKKTEENSEQV 422
T+ P+ T T + + K+ ENS +V
Sbjct: 489 EAQAVTTKKPEKKSTATTATRTKAIKSTTKRVRENSSKV 527
>gi|346322970|gb|EGX92568.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Cordyceps militaris
CM01]
Length = 633
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/386 (54%), Positives = 278/386 (72%), Gaps = 20/386 (5%)
Query: 20 IEEEKQQP--------PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
+EEE+ +P PDL L++RI +I+R+L +F L+++G SR +Y QL D+ +Y
Sbjct: 178 LEEEEDEPGKSNSLLAPDLQLLRQRITDIIRILGDFAKLAEEGRSRADYTSQLLDDICAY 237
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y Y+ FL L +F P E E+ E PRPI +RTNTL+T RRDLA LINRGV L+P
Sbjct: 238 YNYSPFLAEKLYNLFTPREAFAFFEANEAPRPIVIRTNTLRTHRRDLAQALINRGVTLEP 297
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KWSKVGL V++S +P+GATPEY+AG Y+LQ+ASSFLPVMAL+PQ ERV+DMAAAPGG
Sbjct: 298 VGKWSKVGLQVFESSIPLGATPEYLAGHYILQAASSFLPVMALSPQPGERVLDMAAAPGG 357
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+ AA+MKNTG+I AN+ +R K L N+HR+G N IVC+YD E P+V+G D
Sbjct: 358 KTTHCAAMMKNTGVIVANDPNKARAKGLIGNIHRLGAKNVIVCSYDAREFPRVMG--GFD 415
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RVLLDAPCSGTGVI+KD SVKT+K+ D + QKQL+L+AID V+ ++ +GGY+VYS
Sbjct: 416 RVLLDAPCSGTGVIAKDPSVKTNKTERDFMTLPHTQKQLLLSAIDSVN-HAGTGGYVVYS 474
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TCS+ V ENE V+ YAL +R +++LV GL FG++GF + F PSL+ TRR+YPH +
Sbjct: 475 TCSVTVEENEQVVAYALSRRPNIRLVDTGLPFGKEGFTSYMGKTFDPSLKLTRRYYPHTY 534
Query: 371 NMDGFFVAKLKKMSNSKKTSAGPQPS 396
N+DGF+VAK KK+ GP P+
Sbjct: 535 NVDGFYVAKFKKI--------GPTPA 552
>gi|358339374|dbj|GAA47450.1| ribosomal RNA methyltransferase Nop2 [Clonorchis sinensis]
Length = 700
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/379 (57%), Positives = 277/379 (73%), Gaps = 9/379 (2%)
Query: 7 EESDEFRLPTKEEIEE-EKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK 65
E DE + P + + EE EK DL L +RI++ + +LS+FK+ + RK + L
Sbjct: 330 ESMDEKQPPEQLDQEEPEKTTSQDLTYLDQRIRDWMLMLSDFKNRAPPDLKRKSCINSLL 389
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
D+ Y YN+FL ++FP +L+E IE+ E RP+ LRTNTLKTRRR+LA LINR
Sbjct: 390 DDICKRYSYNKFLAHKFFDLFPK-DLIEFIEANEIDRPVTLRTNTLKTRRRELAQALINR 448
Query: 126 GVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185
GVNLDPL WS+VGLVVY SQVP+GATPEY+AG Y+LQ ASS LPVMALAP+ ER++D+
Sbjct: 449 GVNLDPLEPWSRVGLVVYSSQVPLGATPEYLAGHYILQGASSMLPVMALAPKPGERILDL 508
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
AAPGGK TYIA LMKNTG ++ANE+ +R K+L N HRMG+ NTIVC DG + P +
Sbjct: 509 CAAPGGKATYIAQLMKNTGTLFANELNPTRAKALIGNCHRMGIVNTIVCVEDGRKFPNL- 567
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
++ DRVLLDAPCSGTG+I+KD SVK SK+ EDIQ+C+ LQK+LILAA+D K G
Sbjct: 568 -MSNFDRVLLDAPCSGTGIIAKDHSVKASKTNEDIQRCATLQKELILAAVDAC----KPG 622
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
GYIVYSTCSI+V ENEA+I YA+KKR + +V L FG GF+ F+ FHP +E+TRR+
Sbjct: 623 GYIVYSTCSILVEENEAIIWYAMKKRKLAIVETKL-FGENGFINFKGFHFHPKMERTRRY 681
Query: 366 YPHVHNMDGFFVAKLKKMS 384
YPH HN+DGFFVAKLK+++
Sbjct: 682 YPHKHNVDGFFVAKLKRLA 700
>gi|164655415|ref|XP_001728837.1| hypothetical protein MGL_4004 [Malassezia globosa CBS 7966]
gi|159102723|gb|EDP41623.1| hypothetical protein MGL_4004 [Malassezia globosa CBS 7966]
Length = 763
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/371 (60%), Positives = 283/371 (76%), Gaps = 3/371 (0%)
Query: 12 FRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
F LPT E+ EEEK+ P DL + RI+E+V +LSN + LS+ G SR +Y+ +L D+ +Y
Sbjct: 325 FLLPTVEDEEEEKRAPLDLQLVHMRIQEVVNILSNLQTLSEPGKSRADYMDRLSKDVQTY 384
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
YGYNEFL +E+F P E + E+ E PRP+ +RTNTL+TRRRDLA LINRGV+L+P
Sbjct: 385 YGYNEFLTNMFLELFSPDEAIAFFEANEVPRPVTIRTNTLRTRRRDLAQKLINRGVSLEP 444
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ WSKVGL V++S VPIGATPEY+ G YMLQ+ SSFLP MALAPQ ER++DMA+APGG
Sbjct: 445 VGPWSKVGLQVFESSVPIGATPEYLVGEYMLQAVSSFLPCMALAPQPHERILDMASAPGG 504
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
K TY++ALM+NTG ++AN+ +R+KSLTAN+HRMG N +VCNYDG + PKV+G D
Sbjct: 505 KVTYLSALMQNTGCVFANDSNKARIKSLTANIHRMGCRNVVVCNYDGRQFPKVIG--GFD 562
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
RV+LD+PCSGTGVISKD SVKT+K+ D S LQKQLIL AID V+ S+SGGY+VYS
Sbjct: 563 RVMLDSPCSGTGVISKDASVKTNKTKRDFILLSQLQKQLILCAIDSVNPRSESGGYVVYS 622
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TCS+MV ENE V++YAL+KR +V++VP G+DFGR G FR +F + RR +PHVH
Sbjct: 623 TCSVMVEENEEVVEYALRKRPNVRIVPTGIDFGRDGLKCFRGKKFDERMPFCRRIFPHVH 682
Query: 371 NMDGFFVAKLK 381
NMDGFFV KLK
Sbjct: 683 NMDGFFVCKLK 693
>gi|429327745|gb|AFZ79505.1| NOL1/NOP2/sun RNA methylase family member protein [Babesia equi]
Length = 487
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/401 (54%), Positives = 288/401 (71%), Gaps = 15/401 (3%)
Query: 19 EIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT---SRKEYVQQLKLDLGSYYGYN 75
+ EE K + DL +++ RI+ I +LS + +++ T R+ +V +LK + YYGY+
Sbjct: 72 DAEELKIEESDLNSVKDRIESICGILSKWSAVTKAQTVTRKRESFVSELKRLVSLYYGYS 131
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
+ L +++F PVE ++ E+ E+P P+ +RTNTLKTRR++LA LINRG N+DP W
Sbjct: 132 DELADYFLKLFNPVEAIQFFEANEQPLPLTIRTNTLKTRRKELAVSLINRGANVDPTGDW 191
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTY 195
+K GLVV+ S+VPIGATPEY+AG YMLQSASS +PV+ALAP+E E+V+D+AAAPGGKTT+
Sbjct: 192 TKEGLVVHSSKVPIGATPEYLAGHYMLQSASSLIPVLALAPKEGEKVLDIAAAPGGKTTH 251
Query: 196 IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255
I +M NTGLIYAN+ R K+L AN+HR+GVTNTIV NYDG +L VL +DRVL
Sbjct: 252 IGQIMNNTGLIYANDFNKDRCKALVANIHRLGVTNTIVTNYDGTKLLNVLP--PLDRVLC 309
Query: 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315
DAPCSG GVIS+D SVK ++L+DIQ+ + LQKQL+ AID+V++ SK+GG IVYSTCS+
Sbjct: 310 DAPCSGLGVISRDPSVKVKRTLKDIQENAVLQKQLLCTAIDLVNSASKTGGCIVYSTCSL 369
Query: 316 MVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL-EKTRRFYPHVHNMDG 374
V ENE V++YAL+ R+VKLVP GLD G F RFR +FHPS+ RRFYPH HN+DG
Sbjct: 370 SVEENEEVVNYALRMRNVKLVPLGLDIGSPAFSRFRGRKFHPSIAAHARRFYPHKHNLDG 429
Query: 375 FFVAKLKKMSN-----SKKTSAGPQ----PSETVEQQTPES 406
FFVAK K+SN K+ PQ P E VE+ PE+
Sbjct: 430 FFVAKFVKLSNKIPIREKRFRGFPQGQNEPQEAVEEPKPET 470
>gi|256071287|ref|XP_002571972.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
gi|353229499|emb|CCD75670.1| putative nucleolar protein nol1/nop2 [Schistosoma mansoni]
Length = 479
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/356 (58%), Positives = 274/356 (76%), Gaps = 8/356 (2%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
D L +RI+ + +LS+FK+ + +R V+ L DL S Y YN+FL+ L+++FP
Sbjct: 122 DSSTLNQRIRNWLYILSDFKNRAPADLNRSLCVRTLISDLCSRYSYNQFLMVKLLDLFPK 181
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E++E++E+ E RP+ +RTNTLKTRRR+LA LINRGVNLDPL WSKVGLVVY SQVP
Sbjct: 182 -EIVEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNLDPLEPWSKVGLVVYSSQVP 240
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
+GATPEY+AG Y+LQ ASS LPVMAL+PQ ER++D+ AAPGGKTTYIA LMKNTG I+A
Sbjct: 241 LGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAPGGKTTYIAQLMKNTGTIFA 300
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE+ SR K+L N HRMGVTNT++C +G + PK+ ++ DRVL+DAPCSGTG+I+KD
Sbjct: 301 NEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKI--MSNFDRVLVDAPCSGTGIIAKD 358
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
SVKT+K+ ++IQKC LQK+L++AAID + K GGY+VYSTCSI+V ENE V+++AL
Sbjct: 359 PSVKTTKNNDEIQKCVELQKRLLVAAID----SCKVGGYVVYSTCSILVEENENVVNFAL 414
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++R V+L L FG +GF F+ ++FHP + + RRFYPH HN+DGFFVAK+KKM+
Sbjct: 415 RRRKVRLEETKL-FGEKGFTAFKGYQFHPHMTRVRRFYPHKHNVDGFFVAKMKKMA 469
>gi|70985320|ref|XP_748166.1| nucleolar RNA methyltransferase (Nop2) [Aspergillus fumigatus
Af293]
gi|66845794|gb|EAL86128.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
fumigatus Af293]
gi|159125911|gb|EDP51027.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
fumigatus A1163]
Length = 751
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/370 (58%), Positives = 264/370 (71%), Gaps = 7/370 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +R+L + K L Q G SR +Y+Q L D+ +YYGY FL L +F
Sbjct: 230 PDLQLLRTRITDTIRILGDLKTLGQPGKSRADYLQLLLDDICTYYGYTPFLAEKLFNLFT 289
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 290 PMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAV 349
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMAAAPGGKTTYI+ALM+NTG +
Sbjct: 350 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVI 409
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV N D PK LG DRVLLDAPC+GTGVIS
Sbjct: 410 ANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKALG--GFDRVLLDAPCTGTGVIS 467
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVKTSK+ D ++Q+ L+LAAID VD SK+GGYIVYSTCS+ V ENEAV+ Y
Sbjct: 468 KDPSVKTSKNERDFLAIPHMQRNLLLAAIDSVDHASKTGGYIVYSTCSVTVEENEAVVQY 527
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM- 383
AL+KR +VKLV GL DFG GF + +F P + TRR++PH N+DGFFV KLKK
Sbjct: 528 ALRKRPNVKLVDTGLGDFGSPGFTSYMGKKFDPKMTLTRRYFPHRENVDGFFVCKLKKTG 587
Query: 384 -SNSKKTSAG 392
+ + K SAG
Sbjct: 588 PTPTPKPSAG 597
>gi|66475704|ref|XP_627668.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa
II]
gi|32398900|emb|CAD98365.1| nucleolar protein-like, probable [Cryptosporidium parvum]
gi|46229100|gb|EAK89949.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa
II]
gi|323508963|dbj|BAJ77374.1| cgd6_3230 [Cryptosporidium parvum]
Length = 542
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/395 (52%), Positives = 279/395 (70%), Gaps = 17/395 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSN---------FKDLS 51
+ +NI++ D+ P + E DL ++ R++ IV L + +K L+
Sbjct: 53 IAINIKKGDDDTIGPFGLRVTGE-----DLETIKSRVESIVEYLDSKGPGKATIEYKGLN 107
Query: 52 QKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTL 111
K SR E + +L D+ YGYN L ++ +F P E ++ E+ E RP+ +RTN L
Sbjct: 108 SKKASRSELMDKLADDISILYGYNTELTNYILNLFSPKEALDFFEANENKRPLTIRTNML 167
Query: 112 KTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPV 171
K+RRRDLA LI+RG N+DP +W+KVGL +Y S VPIGATPEY+AG YM+QSASS +PV
Sbjct: 168 KSRRRDLAQKLISRGANVDPTGEWTKVGLTIYSSSVPIGATPEYLAGHYMIQSASSLIPV 227
Query: 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
MALAPQ E+++DMAAAPGGKTTYI LMKN+G++YAN+++ R L ANLHRMG+ N+
Sbjct: 228 MALAPQPGEKILDMAAAPGGKTTYIGQLMKNSGILYANDLRKDRCTGLIANLHRMGINNS 287
Query: 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI 291
IV N DG EL L +DRVLLDAPC+G G+I++D SVK +S++++ + S LQK+L+
Sbjct: 288 IVVNMDGKELGSFLP--KLDRVLLDAPCTGLGIIARDPSVKVKRSIKELAQHSLLQKELL 345
Query: 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFR 351
AA+DMVDANSK+GGYIVYSTCSI + ENE VIDY L+ R VKLVP G++ G G +FR
Sbjct: 346 KAAVDMVDANSKTGGYIVYSTCSISIEENEMVIDYILRTRHVKLVPLGVEIGSNGISKFR 405
Query: 352 EHRFHPSLEK-TRRFYPHVHNMDGFFVAKLKKMSN 385
EHRF+P++ TRR YPH++NMDGFFVAKLKK+SN
Sbjct: 406 EHRFNPTISTYTRRIYPHLNNMDGFFVAKLKKISN 440
>gi|119182737|ref|XP_001242484.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Coccidioides immitis RS]
gi|392865382|gb|EAS31163.2| nucleolar RNA methyltransferase [Coccidioides immitis RS]
Length = 682
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/440 (50%), Positives = 290/440 (65%), Gaps = 22/440 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDL-PNLQ---RRIKEIVRVLSNFKDLSQKGTS 56
MQ NI+E+ P E++ PP L PNLQ RI + +R+L + L Q G S
Sbjct: 203 MQTNIQEDR-----PDVFGDEDQTNLPPGLAPNLQLLRTRITDTIRILGDLATLGQPGKS 257
Query: 57 RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRR 116
R +Y L D+ +YYGY +L L +F P+E E+ E PRP+ +RTNTL+T RR
Sbjct: 258 RVDYTDLLLRDICTYYGYTPYLAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRR 317
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
LA LINRGV L+P+ KWSKVGL V++S VP+GATPEY+AG Y+LQ+ASSFLPVMALAP
Sbjct: 318 SLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAP 377
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
Q ERV+DMAAAPGGKTTY++ALM+NTG + AN+ R K L N+HR+G NTIV N
Sbjct: 378 QPHERVLDMAAAPGGKTTYMSALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNL 437
Query: 237 DG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295
D PK +G DRVLLDAPCSGTGVISKD SVKTSK+ D ++QKQL+LAAI
Sbjct: 438 DARTAFPKAMG--GFDRVLLDAPCSGTGVISKDPSVKTSKTERDFLALPHMQKQLLLAAI 495
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREH 353
D + SK+GGYIVYSTCS+ V ENEAV+ Y L+KR +VK+V GL +FG +GF ++
Sbjct: 496 DSTNHASKTGGYIVYSTCSVTVEENEAVVQYVLRKRPNVKIVDTGLGNFGSEGFKSYKGK 555
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDK 413
+F P + TRR++PH N+DGF+V KLKK+ GP P++T P ++G+
Sbjct: 556 QFDPRMAMTRRYFPHRENVDGFYVCKLKKI--------GPSPADTKGSAAPTKTAADGEV 607
Query: 414 KTEENSEQVLMKKATTKAKD 433
EE + + ++ +KD
Sbjct: 608 ANEEWDKTPIAEENGAGSKD 627
>gi|67619571|ref|XP_667654.1| nucleolar protein-like [Cryptosporidium hominis TU502]
gi|54658807|gb|EAL37423.1| nucleolar protein-like [Cryptosporidium hominis]
Length = 542
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 268/367 (73%), Gaps = 12/367 (3%)
Query: 29 DLPNLQRRIKEIVRVLSN---------FKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLI 79
DL ++ R++ IV L + +K L+ K SR E + +L D+ YGYN L
Sbjct: 76 DLETIKSRVESIVEYLDSKGPGKATIEYKGLNSKKASRSELMDKLADDISILYGYNTELT 135
Query: 80 GALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVG 139
++ +F P E ++ E+ E RP+ +RTN LK+RRRDLA LI+RG N+DP +W+KVG
Sbjct: 136 NYILNLFSPKEALDFFEANENKRPLTIRTNMLKSRRRDLAQKLISRGANVDPTGEWTKVG 195
Query: 140 LVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAAL 199
L +Y S VPIGATPEY+AG YM+QSASS +PVMALAPQ E+++DMAAAPGGKTTYI L
Sbjct: 196 LTIYSSSVPIGATPEYLAGHYMIQSASSLIPVMALAPQPGEKILDMAAAPGGKTTYIGQL 255
Query: 200 MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259
MKN+G++YAN+++ R L ANLHRMG+ N+IV N DG EL L +DRVLLDAPC
Sbjct: 256 MKNSGILYANDLRKDRCTGLIANLHRMGINNSIVVNMDGKELGSFLP--KLDRVLLDAPC 313
Query: 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
+G G+I++D SVK +S++++ + S LQK+L+ AA+DMVDANSK+GGYIVYSTCSI + E
Sbjct: 314 TGLGIIARDPSVKVKRSIKELAQHSLLQKELLKAAVDMVDANSKTGGYIVYSTCSISIEE 373
Query: 320 NEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK-TRRFYPHVHNMDGFFVA 378
NE V+DY L+ R VKLVP G++ G G +FREHRF+P++ TRR YPH++NMDGFFVA
Sbjct: 374 NEMVVDYILRTRHVKLVPLGVEIGSNGISKFREHRFNPTISTYTRRIYPHLNNMDGFFVA 433
Query: 379 KLKKMSN 385
KLKK+SN
Sbjct: 434 KLKKISN 440
>gi|303319389|ref|XP_003069694.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240109380|gb|EER27549.1| Nucleolar protein NOP2, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 682
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/440 (50%), Positives = 289/440 (65%), Gaps = 22/440 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDL-PNLQ---RRIKEIVRVLSNFKDLSQKGTS 56
MQ NI+E+ P E++ PP L PNLQ RI + +R+L + L Q G S
Sbjct: 203 MQTNIQEDR-----PDVFGDEDQTNLPPSLAPNLQLLRTRITDTIRILGDLATLGQPGKS 257
Query: 57 RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRR 116
R +Y L D+ +YYGY +L L +F P+E E+ E PRP+ +RTNTL+T RR
Sbjct: 258 RVDYTDLLLRDICTYYGYTPYLAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRR 317
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
LA LINRGV L+P+ KWSKVGL V++S VP+GATPEY+AG Y+LQ+ASSFLPVMALAP
Sbjct: 318 SLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAP 377
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
Q ERV+DMAAAPGGKTTY++ALM+NTG + AN+ R K L N+HR+G NTIV N
Sbjct: 378 QPHERVLDMAAAPGGKTTYMSALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNL 437
Query: 237 DG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295
D PK +G DRVLLDAPCSGTGVISKD SVKTSK+ D ++QKQL+LAAI
Sbjct: 438 DARTAFPKAMG--GFDRVLLDAPCSGTGVISKDPSVKTSKTERDFFALPHMQKQLLLAAI 495
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREH 353
D SK+GGYIVYSTCS+ V ENEAV+ Y L+KR +VK+V GL +FG +GF ++
Sbjct: 496 DSTTHASKTGGYIVYSTCSVTVEENEAVVQYVLRKRPNVKIVDTGLGNFGSEGFKSYKGK 555
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDK 413
+F P + TRR++PH N+DGF+V KLKK+ GP P++T P ++G+
Sbjct: 556 QFDPRMAMTRRYFPHRENVDGFYVCKLKKI--------GPSPADTKGSAAPTKTAADGEV 607
Query: 414 KTEENSEQVLMKKATTKAKD 433
EE + + ++ +KD
Sbjct: 608 ANEEWDKTPIAEENGAGSKD 627
>gi|320040863|gb|EFW22796.1| nucleolar RNA methyltransferase [Coccidioides posadasii str.
Silveira]
Length = 682
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/440 (50%), Positives = 289/440 (65%), Gaps = 22/440 (5%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDL-PNLQ---RRIKEIVRVLSNFKDLSQKGTS 56
MQ NI+E+ P E++ PP L PNLQ RI + +R+L + L Q G S
Sbjct: 203 MQTNIQEDR-----PDVFGDEDQTNLPPSLAPNLQLLRTRITDTIRILGDLATLGQPGKS 257
Query: 57 RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRR 116
R +Y L D+ +YYGY +L L +F P+E E+ E PRP+ +RTNTL+T RR
Sbjct: 258 RVDYTDLLLRDICTYYGYTPYLAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRR 317
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
LA LINRGV L+P+ KWSKVGL V++S VP+GATPEY+AG Y+LQ+ASSFLPVMALAP
Sbjct: 318 SLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAP 377
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
Q ERV+DMAAAPGGKTTY++ALM+NTG + AN+ R K L N+HR+G NTIV N
Sbjct: 378 QPHERVLDMAAAPGGKTTYMSALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNL 437
Query: 237 DG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295
D PK +G DRVLLDAPCSGTGVISKD SVKTSK+ D ++QKQL+LAAI
Sbjct: 438 DARTAFPKAMG--GFDRVLLDAPCSGTGVISKDPSVKTSKTERDFFALPHMQKQLLLAAI 495
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREH 353
D SK+GGYIVYSTCS+ V ENEAV+ Y L+KR +VK+V GL +FG +GF ++
Sbjct: 496 DSTTHASKTGGYIVYSTCSVTVEENEAVVQYVLRKRPNVKIVDTGLGNFGSEGFKSYKGK 555
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDK 413
+F P + TRR++PH N+DGF+V KLKK+ GP P++T P ++G+
Sbjct: 556 QFDPRMAMTRRYFPHRENVDGFYVCKLKKI--------GPSPADTKGSAAPTKTAADGEV 607
Query: 414 KTEENSEQVLMKKATTKAKD 433
EE + + ++ +KD
Sbjct: 608 ANEEWDKTPIAEENGAGSKD 627
>gi|119499195|ref|XP_001266355.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Neosartorya fischeri NRRL
181]
gi|119414519|gb|EAW24458.1| nucleolar RNA methyltransferase (Nop2), putative [Neosartorya
fischeri NRRL 181]
Length = 750
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/379 (56%), Positives = 263/379 (69%), Gaps = 11/379 (2%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +R+L + K L Q G SR +Y+Q L D+ +YYGY FL L +F
Sbjct: 230 PDLQLLRTRITDTIRILGDLKTLGQPGKSRADYLQLLLDDICTYYGYTPFLAEKLFNLFT 289
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 290 PMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAV 349
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMAAAPGGKTTYI+ALM+NTG +
Sbjct: 350 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVI 409
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV N D PK LG DRVLLDAPC+GTGVIS
Sbjct: 410 ANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKALG--GFDRVLLDAPCTGTGVIS 467
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVKTSK+ D ++Q+ L+LAAID VD SK+GGYIVYSTCS+ V ENEAV+ Y
Sbjct: 468 KDPSVKTSKNERDFLAIPHMQRNLLLAAIDSVDHASKTGGYIVYSTCSVTVEENEAVVQY 527
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L+KR +VKLV GL DFG GF + +F P + TRR++PH N+DGFFV KL
Sbjct: 528 VLRKRPNVKLVDTGLGDFGSPGFTSYMGKKFDPKMTLTRRYFPHRENVDGFFVCKL---- 583
Query: 385 NSKKTSAGPQPSETVEQQT 403
KKT P P + + T
Sbjct: 584 --KKTGPTPTPKPSADGST 600
>gi|400596163|gb|EJP63947.1| NOL1/NOP2/sun family protein [Beauveria bassiana ARSEF 2860]
Length = 631
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/436 (50%), Positives = 290/436 (66%), Gaps = 20/436 (4%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L++RI +I+R+L +F L+++G SR +Y QL D+ +YY Y+ FL L +
Sbjct: 194 PDLQLLRQRIMDIIRILGDFSKLAEEGRSRADYTSQLLDDICAYYNYSPFLAEKLYNLLT 253
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E ES E PRPI +RTNTL+T RRDLA LINRGV L+P+ KWSKVGL V++S +
Sbjct: 254 PREAFAFFESNEAPRPIVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSI 313
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMAL+PQ ERV+DMAAAPGGKTT+ AA+MKNTG++
Sbjct: 314 PLGATPEYLAGHYILQAASSFLPVMALSPQPGERVLDMAAAPGGKTTHCAAMMKNTGVVV 373
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ +R K L N+HR+G N IVC+YD E P+V+G DRVLLDAPCSGTGVI+K
Sbjct: 374 ANDPNKARAKGLIGNIHRLGAKNVIVCSYDAREFPRVMG--GFDRVLLDAPCSGTGVIAK 431
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D SVKT+K+ D + QKQL+L+AID V+ ++ +GGYIVYSTCS+ V ENE V+ YA
Sbjct: 432 DPSVKTNKTERDFMTLPHTQKQLLLSAIDSVN-HAGTGGYIVYSTCSVTVEENEQVVAYA 490
Query: 328 LKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
L +R +V+LV L FG++GF + F PSL+ TRR+YPH +N+DGF+VAK KK+
Sbjct: 491 LSRRPNVRLVDTELPFGKEGFTSYMGKTFDPSLKLTRRYYPHTYNVDGFYVAKFKKI--- 547
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKK--TEENSEQVLMKKATTKAKDLKKKTSGLAEN 444
GP P+ + +N D+ + + V A+ +D G EN
Sbjct: 548 -----GPTPASVSRSK------ANADEPLLPADKAPIVETGPASANGQDAGGDFGGFDEN 596
Query: 445 GNVESPSNEKRRKKRK 460
+ E KR R+
Sbjct: 597 EDKEYMERAKRSAMRR 612
>gi|242770399|ref|XP_002341972.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Talaromyces stipitatus ATCC
10500]
gi|218725168|gb|EED24585.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces
stipitatus ATCC 10500]
Length = 770
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/394 (54%), Positives = 275/394 (69%), Gaps = 7/394 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P++ L+ RI + +RVL + L Q G SR +Y+Q L D+ +YYGY +L L+ +F
Sbjct: 248 PNMQLLRTRITDTLRVLGDLATLGQPGQSRADYMQLLLDDICTYYGYTPYLAEKLMSLFT 307
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L P+ KWSKVGL V++S V
Sbjct: 308 PMEAFAFFEANEIPRPVVIRTNTLRTNRRTLAQALINRGVVLQPVGKWSKVGLQVFESAV 367
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMA+APGGKTTYI+ALM+NTG++
Sbjct: 368 PLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYISALMRNTGIVV 427
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ +R K L N+HR+G NTIVCNY+ E PK+LG DRVLLDAPC+GTGVIS
Sbjct: 428 ANDASKARTKGLIGNIHRLGCKNTIVCNYNAQEAFPKILG--GFDRVLLDAPCTGTGVIS 485
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVKT+K+ D +LQ+QL+LAAID D +SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 486 KDPSVKTNKTERDFLAIPHLQRQLLLAAIDSTDHHSKTGGYIVYSTCSVTVEENEQVVQY 545
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L+KR +VK+V GL FG +GF + +F + TRR++PH N+DGFFV KLKK
Sbjct: 546 VLRKRPNVKIVDTGLGSFGSEGFTSYMGKKFDEKMTLTRRYFPHRENVDGFFVCKLKKTG 605
Query: 385 NSKKTSA--GPQPSETVEQQTPESNVSNGDKKTE 416
S S G ET + ++ +S GD E
Sbjct: 606 PSPGASKKNGVVADETGDTKSNKSASEAGDNDAE 639
>gi|115443216|ref|XP_001218415.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus terreus NIH2624]
gi|114188284|gb|EAU29984.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624]
Length = 734
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 262/372 (70%), Gaps = 13/372 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +R+L + K L Q G SR +Y+Q L D+ +YYGY FL L +F
Sbjct: 222 PDLQLLRTRITDTIRILGDLKTLGQPGKSRADYLQLLLNDICTYYGYTPFLAEKLFNLFT 281
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 282 PMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAV 341
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ +ER++DMAAAPGGKTTYI+ALM+NTG +
Sbjct: 342 PLGATPEYLAGHYILQAASSFLPVMALAPQPEERILDMAAAPGGKTTYISALMRNTGCVI 401
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV N D PK +G DRVLLDAPC+GTGVIS
Sbjct: 402 ANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKAMG--GFDRVLLDAPCTGTGVIS 459
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKT+K+ D ++Q+QL+LAAID VD SK+GGYIVYSTCS+ V ENEAV+ Y
Sbjct: 460 KDPGVKTNKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYIVYSTCSVTVEENEAVVQY 519
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LKKR +VKLV GL DFG GF + F P + TRR++PH N+DGFFV+K KK+
Sbjct: 520 VLKKRPNVKLVDTGLGDFGSPGFTNYMGKHFDPKMTLTRRYFPHRENVDGFFVSKFKKI- 578
Query: 385 NSKKTSAGPQPS 396
GP P+
Sbjct: 579 -------GPTPA 583
>gi|67902172|ref|XP_681342.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4]
gi|40740505|gb|EAA59695.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4]
gi|259480830|tpe|CBF73828.1| TPA: nucleolar RNA methyltransferase (Nop2), putative
(AFU_orthologue; AFUA_5G01760) [Aspergillus nidulans
FGSC A4]
Length = 788
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/438 (51%), Positives = 287/438 (65%), Gaps = 13/438 (2%)
Query: 1 MQLNIR-EESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKE 59
MQ NI + D F E IE E P +L L+ RI E +R+L + K L Q G SR +
Sbjct: 217 MQTNIAGDRPDVF-----EGIEGEGLAP-NLQLLRTRITETIRILGDLKTLGQPGKSRAD 270
Query: 60 YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
Y Q L D+ +YYGY FL L +F P+E E+ E PRP+ +RTNTL+T RR LA
Sbjct: 271 YTQLLLNDICTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLA 330
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
LINRGV L+P+ KWSKVGL V++S VP+GATPEY+AG Y+LQ+ASSFLPVMALAPQE
Sbjct: 331 QALINRGVVLEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQEN 390
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG- 238
ER++DMA+APGGKTTYI+ALM+NTG + AN+ R K L N+HR+G NTIV N D
Sbjct: 391 ERILDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDAR 450
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
PK +G DRVLLDAPC+GTGVI+KD SVKT+K+ D ++Q+QL+LAAID V
Sbjct: 451 TAFPKAMG--GFDRVLLDAPCTGTGVIAKDPSVKTNKNERDFLAIPHMQRQLLLAAIDSV 508
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFH 356
+ SK+GGYIVYSTCS+ V ENEAV+ Y LKKR +VKLV GL DFG GF + F
Sbjct: 509 NHASKTGGYIVYSTCSVTVEENEAVVQYVLKKRPNVKLVETGLGDFGSPGFTHYMGKHFD 568
Query: 357 PSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTE 416
+ TRR++PH N+DGFFV KLKK+ + G + S ++ P+S+ + D +
Sbjct: 569 AKMTMTRRYFPHRENVDGFFVCKLKKIGPTPVQKPGEKDS-SISTSKPKSSTATTDGEQA 627
Query: 417 ENSEQVLMKKATTKAKDL 434
+ V + TT D
Sbjct: 628 VDKTPVTDEDGTTPGDDF 645
>gi|212541847|ref|XP_002151078.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Talaromyces marneffei ATCC
18224]
gi|210065985|gb|EEA20078.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces
marneffei ATCC 18224]
Length = 764
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/396 (54%), Positives = 276/396 (69%), Gaps = 16/396 (4%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P++ L+ RI + +RVL + L Q G SR +Y+Q L D+ +YYGY +L L+ +F
Sbjct: 246 PNMQLLRTRITDTLRVLGDLATLGQPGKSRADYMQLLLDDICTYYGYTPYLAEKLMSLFT 305
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L P+ KWSKVGL V++S V
Sbjct: 306 PMEAFAFFEANEIPRPVVIRTNTLRTNRRTLAQALINRGVVLQPVGKWSKVGLQVFESAV 365
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQE ERV+DMA+APGGKTTYI+ALM+NTG++
Sbjct: 366 PLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYISALMRNTGIVV 425
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIVCNY+G E PK+LG DRVLLDAPC+GTGVIS
Sbjct: 426 ANDASKVRTKGLIGNIHRLGCKNTIVCNYNGQEAFPKILG--GFDRVLLDAPCTGTGVIS 483
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVKT+K+ D ++Q+QL+LAAID D +SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 484 KDPSVKTNKTERDFLAIPHMQRQLLLAAIDSTDHHSKTGGYIVYSTCSVTVEENEQVVQY 543
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L+KR +VK+V GL FG +GF + +F + TRR++PH N+DGFFV KLKK
Sbjct: 544 VLRKRPNVKIVDTGLGSFGSEGFTSYMGKKFDEKMTLTRRYFPHRENVDGFFVCKLKK-- 601
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
GP P + +T + +NG K + SE
Sbjct: 602 ------TGPSPGAS---KTNGATANNGVKSDKSASE 628
>gi|256071289|ref|XP_002571973.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
gi|353229500|emb|CCD75671.1| putative nucleolar protein nol1/nop2 [Schistosoma mansoni]
Length = 490
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/366 (56%), Positives = 274/366 (74%), Gaps = 17/366 (4%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP- 87
D L +RI+ + +LS+FK+ + +R V+ L DL S Y YN+FL+ L+++FP
Sbjct: 122 DSSTLNQRIRNWLYILSDFKNRAPADLNRSLCVRTLISDLCSRYSYNQFLMVKLLDLFPK 181
Query: 88 ---------PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 138
+++E++E+ E RP+ +RTNTLKTRRR+LA LINRGVNLDPL WSKV
Sbjct: 182 EVINIGTQIQSQIVEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNLDPLEPWSKV 241
Query: 139 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAA 198
GLVVY SQVP+GATPEY+AG Y+LQ ASS LPVMAL+PQ ER++D+ AAPGGKTTYIA
Sbjct: 242 GLVVYSSQVPLGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAPGGKTTYIAQ 301
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258
LMKNTG I+ANE+ SR K+L N HRMGVTNT++C +G + PK+ ++ DRVL+DAP
Sbjct: 302 LMKNTGTIFANEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKI--MSNFDRVLVDAP 359
Query: 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318
CSGTG+I+KD SVKT+K+ ++IQKC LQK+L++AAID + K GGY+VYSTCSI+V
Sbjct: 360 CSGTGIIAKDPSVKTTKNNDEIQKCVELQKRLLVAAID----SCKVGGYVVYSTCSILVE 415
Query: 319 ENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
ENE V+++AL++R V+L L FG +GF F+ ++FHP + + RRFYPH HN+DGFFVA
Sbjct: 416 ENENVVNFALRRRKVRLEETKL-FGEKGFTAFKGYQFHPHMTRVRRFYPHKHNVDGFFVA 474
Query: 379 KLKKMS 384
K+KKM+
Sbjct: 475 KMKKMA 480
>gi|226290863|gb|EEH46291.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb18]
Length = 660
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/399 (54%), Positives = 274/399 (68%), Gaps = 13/399 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +R+LS+ L Q G SR +Y L D+ +YYGY FL L +FP
Sbjct: 224 PDLQLLRSRIMESIRILSDLSTLGQTGKSRADYTNLLLADICTYYGYTPFLAEKLFNLFP 283
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 284 PREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESSV 343
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTYI+ALM+NTG +
Sbjct: 344 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGKTTYISALMRNTGCVL 403
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV + D E PK+LG DR+LLDAPCSGTGVIS
Sbjct: 404 ANDASKHRAKGLIGNIHRLGCKNTIVSHLDAGEAFPKILG--GFDRILLDAPCSGTGVIS 461
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVKTSK+ D ++QKQL+LAAID D SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 462 KDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVEENEGVVQY 521
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF + +F + TRR+YPH N+DGF+V KL
Sbjct: 522 ALRKRPNVKIVDTGLGNFGTPGFKSYMGKKFDEKMALTRRYYPHRENVDGFYVCKL---- 577
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
KKT P ++T ++T + G++K ++ EQV
Sbjct: 578 --KKTGLSPYANDT--EETIDRTPIVGEEKEKQIQEQVF 612
>gi|121719340|ref|XP_001276369.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus clavatus NRRL 1]
gi|119404567|gb|EAW14943.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
clavatus NRRL 1]
Length = 755
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/386 (55%), Positives = 266/386 (68%), Gaps = 11/386 (2%)
Query: 1 MQLNIR-EESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKE 59
MQ NI + D F + E + PDL L+ RI + +R+L + K L G SR +
Sbjct: 209 MQTNIAGDRPDVF-----ADTEGKPGLAPDLQLLRTRITDTIRILGDLKTLGHPGKSRAD 263
Query: 60 YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
Y+Q L D+ +YYGY FL L +F P+E E+ E PRP+ +RTNTL+T RR LA
Sbjct: 264 YLQLLLDDICTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLA 323
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
LINRGV L+P+ KWSKVGL V++S VP+GATPEY+AG Y+LQ+ASSFLPVMALAPQ
Sbjct: 324 QALINRGVVLEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPN 383
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG- 238
ERV+DMAAAPGGKTTYI+ALM+NTG + AN+ R K L N+HR+G NTIV N D
Sbjct: 384 ERVLDMAAAPGGKTTYISALMRNTGCVVANDASKPRAKGLIGNIHRLGCKNTIVTNLDAR 443
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
PK LG DRVLLDAPC+GTGVISKD SVKTSK+ D ++Q+ L+LAAID V
Sbjct: 444 TAFPKALG--GFDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRNLLLAAIDSV 501
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFH 356
D SK+GGY+VYSTCS+ V ENEAV+ Y L+KR +VKLV GL DFG GF + +F
Sbjct: 502 DHTSKTGGYVVYSTCSVTVEENEAVVQYVLRKRPNVKLVDTGLGDFGTPGFTAYMGKKFD 561
Query: 357 PSLEKTRRFYPHVHNMDGFFVAKLKK 382
P + TRR++PH N+DGFFV+K KK
Sbjct: 562 PKMTLTRRYFPHRENVDGFFVSKFKK 587
>gi|169771881|ref|XP_001820410.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus oryzae RIB40]
gi|83768269|dbj|BAE58408.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874756|gb|EIT83601.1| tRNA and rRNA cytosine-C5-methylase [Aspergillus oryzae 3.042]
Length = 751
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/425 (51%), Positives = 284/425 (66%), Gaps = 27/425 (6%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +R+L + K L Q G SR +YV L D+ +YYGY FL L +F
Sbjct: 223 PDLQLLRTRITDTIRILGDLKTLGQAGKSRADYVSLLLDDICTYYGYTPFLAEKLFNLFT 282
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 283 PMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAV 342
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMA+APGGKTTYI+ALM+NTG +
Sbjct: 343 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASAPGGKTTYISALMRNTGCVI 402
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NT+V + D PK +G DRVLLDAPC+GTGVIS
Sbjct: 403 ANDASKPRAKGLIGNIHRLGCKNTLVTHLDARTAFPKAMG--GFDRVLLDAPCTGTGVIS 460
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD +VKTSK+ D ++Q+QL+LAAID VD +SK+GGYIVYSTCS+ V ENEAV+ Y
Sbjct: 461 KDPAVKTSKTERDFLAIPHMQRQLLLAAIDSVDHSSKTGGYIVYSTCSVTVEENEAVVQY 520
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L+KR +VK+V GL DFG GF + F + TRR++PH N+DGF+V KLKK
Sbjct: 521 VLRKRPNVKIVDTGLGDFGSPGFKEYMGKHFDAKMTMTRRYFPHRENVDGFYVCKLKK-- 578
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKA--KDLKKKTSGLA 442
GP P++ + PE ++ K +E +AT K+ +D+ KT
Sbjct: 579 ------TGPSPTD----KKPEGEAASEPKSSE--------ARATPKSDDEDVIDKTPITD 620
Query: 443 ENGNV 447
++GNV
Sbjct: 621 DDGNV 625
>gi|261200155|ref|XP_002626478.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239593550|gb|EEQ76131.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
gi|239607570|gb|EEQ84557.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ER-3]
Length = 654
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/399 (53%), Positives = 271/399 (67%), Gaps = 19/399 (4%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +R+L + L + SR +Y L D+ +YYGY +L L +F
Sbjct: 210 PDLQLLRSRITETIRILGDLSTLGRPSKSRADYTNLLISDICTYYGYTPYLAEKLFNLFT 269
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 270 PREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAV 329
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMAAAPGGKTTYI+ALM+NTG +
Sbjct: 330 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVL 389
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV N D E PK+LG DR+LLDAPCSGTGVIS
Sbjct: 390 ANDASKPRAKGLIGNIHRLGCKNTIVSNLDAREAFPKILG--GFDRILLDAPCSGTGVIS 447
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD S+KTSK+ D ++QKQL+LAAID D SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 448 KDPSIKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVEENEGVVQY 507
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF + +F + TRR+YPH N+DGF+V KLKKM
Sbjct: 508 ALRKRPNVKIVDTGLGNFGSPGFKSYMGKKFDDKMPLTRRYYPHRENVDGFYVCKLKKM- 566
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
GP P ++ E + +NG K E +E+V+
Sbjct: 567 -------GPSP------KSAEKSSTNGSKSEIEEAEEVV 592
>gi|238485520|ref|XP_002373998.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus flavus NRRL3357]
gi|220698877|gb|EED55216.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
flavus NRRL3357]
Length = 751
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/425 (51%), Positives = 284/425 (66%), Gaps = 27/425 (6%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI + +R+L + K L Q G SR +YV L D+ +YYGY FL L +F
Sbjct: 223 PDLQLLRTRITDTIRILGDLKTLGQAGKSRADYVSLLLDDICTYYGYTPFLAEKLFNLFT 282
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 283 PMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAV 342
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMA+APGGKTTYI+ALM+NTG +
Sbjct: 343 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASAPGGKTTYISALMRNTGCVI 402
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NT+V + D PK +G DRVLLDAPC+GTGVIS
Sbjct: 403 ANDASKPRAKGLIGNIHRLGCKNTLVTHLDARTAFPKAMG--GFDRVLLDAPCTGTGVIS 460
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD +VKTSK+ D ++Q+QL+LAAID VD +SK+GGYIVYSTCS+ V ENEAV+ Y
Sbjct: 461 KDPAVKTSKTERDFLAIPHMQRQLLLAAIDSVDHSSKTGGYIVYSTCSVTVEENEAVVQY 520
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L+KR +VK+V GL DFG GF + F + TRR++PH N+DGF+V KLKK
Sbjct: 521 VLRKRPNVKIVDTGLGDFGSPGFKEYMGKHFDAKMTMTRRYFPHRENVDGFYVCKLKK-- 578
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKA--KDLKKKTSGLA 442
GP P++ + PE ++ K +E +AT K+ +D+ KT
Sbjct: 579 ------TGPSPTD----KKPEGEAASEPKSSE--------ARATPKSDDEDVIDKTPITD 620
Query: 443 ENGNV 447
++GNV
Sbjct: 621 DDGNV 625
>gi|327355493|gb|EGE84350.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ATCC
18188]
Length = 692
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/399 (53%), Positives = 271/399 (67%), Gaps = 19/399 (4%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +R+L + L + SR +Y L D+ +YYGY +L L +F
Sbjct: 210 PDLQLLRSRITETIRILGDLSTLGRPSKSRADYTNLLISDICTYYGYTPYLAEKLFNLFT 269
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 270 PREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAV 329
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMAAAPGGKTTYI+ALM+NTG +
Sbjct: 330 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVL 389
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV N D E PK+LG DR+LLDAPCSGTGVIS
Sbjct: 390 ANDASKPRAKGLIGNIHRLGCKNTIVSNLDAREAFPKILG--GFDRILLDAPCSGTGVIS 447
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD S+KTSK+ D ++QKQL+LAAID D SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 448 KDPSIKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVEENEGVVQY 507
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF + +F + TRR+YPH N+DGF+V KLKKM
Sbjct: 508 ALRKRPNVKIVDTGLGNFGSPGFKSYMGKKFDDKMPLTRRYYPHRENVDGFYVCKLKKM- 566
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
GP P ++ E + +NG K E +E+V+
Sbjct: 567 -------GPSP------KSAEKSSTNGSKSEIEEAEEVV 592
>gi|358368159|dbj|GAA84776.1| nucleolar RNA methyltransferase [Aspergillus kawachii IFO 4308]
Length = 758
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/401 (53%), Positives = 267/401 (66%), Gaps = 12/401 (2%)
Query: 21 EEEKQQP---PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEF 77
+ E QP PDL L+ RI + +R+L + K L G SR +Y Q L D+ +YYGY +
Sbjct: 210 DAEGTQPGLAPDLQLLRTRITDTIRILGDLKTLGAPGKSRTDYTQLLIGDICTYYGYTPY 269
Query: 78 LIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK 137
L L +F P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSK
Sbjct: 270 LAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 329
Query: 138 VGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIA 197
VGL V++S VP+GATPEY+AG Y++Q+ASSFLPVMALAPQ ERV+DMA+APGGKTTYI+
Sbjct: 330 VGLQVFESAVPLGATPEYLAGHYIIQAASSFLPVMALAPQPNERVLDMASAPGGKTTYIS 389
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLD 256
ALM+NTG + AN+ R K L N+HR+G NTIV N D PK +G DRVLLD
Sbjct: 390 ALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNMDARTAFPKAMG--GFDRVLLD 447
Query: 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316
APC+GTGVISKD VKTSK+ D ++Q+QL+LAAID VD SK+GGYIVYSTCS+
Sbjct: 448 APCTGTGVISKDPGVKTSKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYIVYSTCSVT 507
Query: 317 VTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
V ENEAV+ Y L+KR +VKLV GL DFG G + F P + TRR++PH N+DG
Sbjct: 508 VEENEAVVQYVLRKRPNVKLVDTGLGDFGSPGMTSYMGKHFDPKMTLTRRYFPHRENVDG 567
Query: 375 FFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKT 415
FFV KLKK + S P+P + T S KT
Sbjct: 568 FFVCKLKKTAASPT----PKPGDAAAAATSTEGTSAKKSKT 604
>gi|281203041|gb|EFA77242.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
Length = 403
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/318 (61%), Positives = 253/318 (79%), Gaps = 3/318 (0%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
+ +Y+GY+ +L+ +++F E +E +E+ E RP+ +RTNTLKT+R+DLADVL RGV
Sbjct: 1 MATYFGYSSWLVDVFLKIFNVSETLEFLEANETQRPLTIRTNTLKTKRKDLADVLSTRGV 60
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
+L+P+ KWS+VGL +YDSQV IGATPEY+AG Y+ QSASSFLPV+AL PQ ERV+DM A
Sbjct: 61 HLEPI-KWSQVGLTIYDSQVAIGATPEYLAGHYIQQSASSFLPVLALEPQPGERVLDMCA 119
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
+PGGKTTYIA+LMKNTG++ AN++ R++SL AN+HR+GV NT+V N DG E P +G
Sbjct: 120 SPGGKTTYIASLMKNTGVLVANDINKERMRSLVANIHRLGVRNTVVSNLDGREYPSRMG- 178
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
DRVL+DAPC G GVI+KD+ +K +KS D+ KC+++QK+LIL AID VDANSK+GG
Sbjct: 179 -GFDRVLVDAPCVGLGVIAKDQQIKMTKSERDVTKCTHIQKELILHAIDSVDANSKTGGI 237
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
IVYSTCS+ V ENEAV+DYALKKR V+LV ++FG QGF +RE RF+P+L T+RFYP
Sbjct: 238 IVYSTCSLTVEENEAVVDYALKKRHVQLVDTSIEFGVQGFTNYREQRFNPNLILTKRFYP 297
Query: 368 HVHNMDGFFVAKLKKMSN 385
H HNMDGF+VAK KK+SN
Sbjct: 298 HTHNMDGFYVAKFKKLSN 315
>gi|145512139|ref|XP_001441986.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409258|emb|CAK74589.1| unnamed protein product [Paramecium tetraurelia]
Length = 554
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 264/370 (71%), Gaps = 14/370 (3%)
Query: 21 EEEKQQ-----PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYN 75
+EE+QQ DL + RI +I+ +L K SR+E + +LK L +YYGYN
Sbjct: 148 QEEEQQNDQLFETDLNAIMNRINKIIEIL---KQKEYGKFSREELLNELKKHLCTYYGYN 204
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
L+ MF P EL+ +++ + PRPI +R NTL+TRR++LA L+ RGVNLD + W
Sbjct: 205 SDLMSHFSSMFKPAELVAFLDANDAPRPITIRVNTLRTRRKELAQTLVQRGVNLDSVGDW 264
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTY 195
+KVGLV+Y+S+VPIGATPEY++G YMLQSASSFLPV+ALAPQ ER++DMAAAPGGKTTY
Sbjct: 265 TKVGLVIYESKVPIGATPEYLSGHYMLQSASSFLPVLALAPQMNERILDMAAAPGGKTTY 324
Query: 196 IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255
IA LMKN+G+I+AN+ R K+L NL RMGVTN IV NYDG + PKV + DRVLL
Sbjct: 325 IAQLMKNSGVIFANDTSKDREKALFYNLQRMGVTNCIVTNYDGRKFPKV--MKNFDRVLL 382
Query: 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315
DAPC+G G+ISKD S+K K + DI K S+LQK+LIL+AID K GG +VYSTCS+
Sbjct: 383 DAPCTGLGIISKDPSIKAQKQMRDILKHSHLQKELILSAIDCC----KKGGIVVYSTCSV 438
Query: 316 MVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGF 375
V ENE V+ YAL R VKL+ GL+ G G ++F + +FHPS+ RR YPHVHNMDGF
Sbjct: 439 SVHENEVVLQYALNNRHVKLIETGLEVGNPGLLKFDDKKFHPSMNLARRIYPHVHNMDGF 498
Query: 376 FVAKLKKMSN 385
F AKLKK+++
Sbjct: 499 FYAKLKKINH 508
>gi|145251900|ref|XP_001397463.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus niger CBS 513.88]
gi|134083004|emb|CAK42767.1| unnamed protein product [Aspergillus niger]
Length = 762
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/381 (54%), Positives = 262/381 (68%), Gaps = 14/381 (3%)
Query: 21 EEEKQQP---PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEF 77
+ E QP PDL L+ RI + +R+L + K L G SR +Y + L D+ +YYGY +
Sbjct: 210 DAEGTQPGLAPDLQLLRTRITDTIRILGDLKTLGAPGKSRTDYTELLIADICTYYGYTPY 269
Query: 78 LIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK 137
L L +F P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSK
Sbjct: 270 LAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 329
Query: 138 VGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIA 197
VGL V++S VP+GATPEY+AG Y++Q+ASSFLPVMALAPQ ERV+DMA+APGGKTTYI+
Sbjct: 330 VGLQVFESAVPLGATPEYLAGHYIIQAASSFLPVMALAPQPNERVLDMASAPGGKTTYIS 389
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLD 256
ALM+NTG + AN+ R K L N+HR+G NTIV N D PK +G DRVLLD
Sbjct: 390 ALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNMDARTAFPKAMG--GFDRVLLD 447
Query: 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316
APC+GTGVISKD VKTSK+ D ++Q+QL+LAAID VD SK+GGY+VYSTCS+
Sbjct: 448 APCTGTGVISKDPGVKTSKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYVVYSTCSVT 507
Query: 317 VTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
V ENEAV+ Y L+KR +VKLV GL DFG G + F P + TRR++PH N+DG
Sbjct: 508 VEENEAVVQYVLRKRPNVKLVDTGLGDFGSPGMTSYMGKHFDPKMTLTRRYFPHRENVDG 567
Query: 375 FFVAKLKKMSNSKKTSAGPQP 395
FFV KL KKT+A P P
Sbjct: 568 FFVCKL------KKTAATPTP 582
>gi|350633373|gb|EHA21738.1| hypothetical protein ASPNIDRAFT_210766 [Aspergillus niger ATCC
1015]
Length = 681
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/381 (54%), Positives = 262/381 (68%), Gaps = 14/381 (3%)
Query: 21 EEEKQQP---PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEF 77
+ E QP PDL L+ RI + +R+L + K L G SR +Y + L D+ +YYGY +
Sbjct: 210 DAEGTQPGLAPDLQLLRTRITDTIRILGDLKTLGAPGKSRTDYTELLIADICTYYGYTPY 269
Query: 78 LIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK 137
L L +F P+E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSK
Sbjct: 270 LAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 329
Query: 138 VGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIA 197
VGL V++S VP+GATPEY+AG Y++Q+ASSFLPVMALAPQ ERV+DMA+APGGKTTYI+
Sbjct: 330 VGLQVFESAVPLGATPEYLAGHYIIQAASSFLPVMALAPQPNERVLDMASAPGGKTTYIS 389
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLD 256
ALM+NTG + AN+ R K L N+HR+G NTIV N D PK +G DRVLLD
Sbjct: 390 ALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNMDARTAFPKAMG--GFDRVLLD 447
Query: 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316
APC+GTGVISKD VKTSK+ D ++Q+QL+LAAID VD SK+GGY+VYSTCS+
Sbjct: 448 APCTGTGVISKDPGVKTSKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYVVYSTCSVT 507
Query: 317 VTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
V ENEAV+ Y L+KR +VKLV GL DFG G + F P + TRR++PH N+DG
Sbjct: 508 VEENEAVVQYVLRKRPNVKLVDTGLGDFGSPGMTSYMGKHFDPKMTLTRRYFPHRENVDG 567
Query: 375 FFVAKLKKMSNSKKTSAGPQP 395
FFV KL KKT+A P P
Sbjct: 568 FFVCKL------KKTAATPTP 582
>gi|295658139|ref|XP_002789632.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226283185|gb|EEH38751.1| Nop16-like protein NOP2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 677
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/399 (53%), Positives = 272/399 (68%), Gaps = 15/399 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +R+LS+ L Q G SR +Y L D+ +YYGY+ FL L +F
Sbjct: 224 PDLQLLRSRITESIRILSDLSALGQTGKSRADYTNLLLADICTYYGYSPFLAEKLFNLFT 283
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 284 PREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESSV 343
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTYI+ALM+NTG +
Sbjct: 344 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGKTTYISALMRNTGCVL 403
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV + D E PK+LG DR+LLDAPCSGTGVIS
Sbjct: 404 ANDASKLRAKGLIGNIHRLGCKNTIVSHLDAREAFPKILG--GFDRILLDAPCSGTGVIS 461
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVKTSK+ D ++QKQL+LAAID D SK+GGYIVYSTCS+ V ENE+V+ Y
Sbjct: 462 KDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVEENESVVQY 521
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF + +F + TRR++PH N+DGF+V KL
Sbjct: 522 ALRKRPNVKIVDTGLGNFGTPGFKSYMGKKFDEKMTLTRRYFPHRENVDGFYVCKL---- 577
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
KKT P S++ SN + G +++E+ +
Sbjct: 578 --KKTGLSPYASKSASG----SNANGGLMAAADDTEETI 610
>gi|326480150|gb|EGE04160.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Trichophyton equinum CBS
127.97]
Length = 690
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/387 (54%), Positives = 264/387 (68%), Gaps = 14/387 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P+L L+ RI + +R+L + L Q G SR +Y L D+ YYGY +L L +F
Sbjct: 235 PNLQLLRTRITDTIRILGDLSTLGQPGKSRADYTDLLLNDICVYYGYTPYLAEKLFSLFT 294
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRPI +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 295 PMEASSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 354
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTY +ALM+NTG I
Sbjct: 355 PLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSIL 414
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ +R K L N+HR+G NTIV N D PK +G DRVLLDAPCSGTGVIS
Sbjct: 415 ANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIG--GFDRVLLDAPCSGTGVIS 472
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 473 KDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHTSKTGGYIVYSTCSVTVEENEGVVQY 532
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF + +F + TRR+YPH N+DGFFV KLKK
Sbjct: 533 ALRKRPNVKIVDTGLGNFGTPGFKSYMNKKFDDRMPLTRRYYPHRENVDGFFVCKLKK-- 590
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNG 411
GP P+ET Q+ P ++ NG
Sbjct: 591 ------TGPSPAETT-QKAPGTSEGNG 610
>gi|327301379|ref|XP_003235382.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Trichophyton rubrum CBS
118892]
gi|326462734|gb|EGD88187.1| nucleolar protein NOP2 [Trichophyton rubrum CBS 118892]
Length = 690
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/389 (54%), Positives = 264/389 (67%), Gaps = 13/389 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P+L L+ RI + +R+L + L Q G SR +Y L D+ YYGY +L L +F
Sbjct: 235 PNLQLLRTRITDTIRILGDLTTLGQPGKSRADYTDLLLNDICVYYGYTPYLAEKLFSLFT 294
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRPI +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 295 PMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 354
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTY +ALM+NTG I
Sbjct: 355 PLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSIL 414
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ +R K L N+HR+G NTIV N D PK +G DRVLLDAPCSGTGVIS
Sbjct: 415 ANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIG--GFDRVLLDAPCSGTGVIS 472
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 473 KDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVEENEGVVQY 532
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF F +F + TRR+YPH N+DGFFV KLKK
Sbjct: 533 ALRKRPNVKIVDTGLGNFGTPGFKSFMNKKFDDKMPLTRRYYPHRENVDGFFVCKLKK-- 590
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDK 413
GP P+ET ++ S S G++
Sbjct: 591 ------TGPSPAETTQKAPGTSEGSGGEE 613
>gi|326468870|gb|EGD92879.1| nucleolar protein NOP2 [Trichophyton tonsurans CBS 112818]
Length = 690
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/387 (54%), Positives = 264/387 (68%), Gaps = 14/387 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P+L L+ RI + +R+L + L Q G SR +Y L D+ YYGY +L L +F
Sbjct: 235 PNLQLLRTRITDTIRILGDLSTLGQPGKSRADYTDLLLNDICVYYGYTPYLAEKLFSLFT 294
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRPI +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 295 PMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 354
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTY +ALM+NTG I
Sbjct: 355 PLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSIL 414
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ +R K L N+HR+G NTIV N D PK +G DRVLLDAPCSGTGVIS
Sbjct: 415 ANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIG--GFDRVLLDAPCSGTGVIS 472
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 473 KDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHTSKTGGYIVYSTCSVTVEENEGVVQY 532
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF + +F + TRR+YPH N+DGFFV KLKK
Sbjct: 533 ALRKRPNVKIVDTGLGNFGTPGFKSYMNKKFDDRMPLTRRYYPHRENVDGFFVCKLKK-- 590
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNG 411
GP P+ET Q+ P ++ NG
Sbjct: 591 ------TGPSPAETT-QKVPGTSEGNG 610
>gi|302652446|ref|XP_003018073.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517]
gi|291181678|gb|EFE37428.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517]
Length = 690
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/389 (54%), Positives = 264/389 (67%), Gaps = 13/389 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P+L L+ RI + +R+L + L Q G SR +Y L D+ YYGY +L L +F
Sbjct: 235 PNLQLLRTRITDTIRILGDLSTLGQPGKSRADYTDLLLNDICVYYGYTPYLAEKLFSLFT 294
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRPI +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 295 PMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 354
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTY +ALM+NTG I
Sbjct: 355 PLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSIL 414
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ +R K L N+HR+G NTIV N D PK +G DRVLLDAPCSGTGVIS
Sbjct: 415 ANDASKTRAKGLIGNIHRLGCKNTIVSNLDARTAFPKAIG--GFDRVLLDAPCSGTGVIS 472
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 473 KDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVEENEGVVQY 532
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF + +F + TRR+YPH N+DGFFV KLKK
Sbjct: 533 ALRKRPNVKIVDTGLGNFGTPGFKTYMNKKFDDKMPLTRRYYPHRENVDGFFVCKLKK-- 590
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDK 413
GP P+ET ++ S S G++
Sbjct: 591 ------TGPSPAETTQKAPGTSEGSGGEE 613
>gi|241173797|ref|XP_002410886.1| nucleolar protein, putative [Ixodes scapularis]
gi|215495039|gb|EEC04680.1| nucleolar protein, putative [Ixodes scapularis]
Length = 420
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/308 (63%), Positives = 242/308 (78%), Gaps = 2/308 (0%)
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGL+VY+SQVP+GATPEY+AG Y+LQ A+S LPVMALAPQE E
Sbjct: 12 ALINRGVNLDPVGKWSKVGLIVYNSQVPVGATPEYLAGHYVLQGAASMLPVMALAPQENE 71
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM AAPGGKTT+IAA+MKNTGL++ANE+ R K++ NLHR+GV NTIVC+YDG +
Sbjct: 72 RILDMCAAPGGKTTHIAAIMKNTGLLFANELHQERCKAIIGNLHRLGVNNTIVCSYDGRK 131
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
P+V+ DRVLLDAPCSGTGV+SKD +VKT+K +DI +CS LQKQLILAAID D
Sbjct: 132 FPEVV--KGFDRVLLDAPCSGTGVVSKDPAVKTNKEEKDILRCSQLQKQLILAAIDCADC 189
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+ GYIVYSTCS+M ENE VIDYALKKR+VKLVP GLDFGR+G R+RE+RFHPSL
Sbjct: 190 SDNKPGYIVYSTCSVMPEENEWVIDYALKKRNVKLVPTGLDFGREGLTRYREYRFHPSLN 249
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
+TRRFYPH HNM+GFFVAKLKK SN+ +A + + + V ++K E + +
Sbjct: 250 RTRRFYPHAHNMEGFFVAKLKKFSNTIPLTAIKEEKTKEKDEKCVEKVDANNQKAEPSRK 309
Query: 421 QVLMKKAT 428
+VL +K +
Sbjct: 310 KVLKRKGS 317
>gi|302501985|ref|XP_003012984.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371]
gi|291176545|gb|EFE32344.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371]
Length = 689
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/389 (54%), Positives = 264/389 (67%), Gaps = 13/389 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P+L L+ RI + +R+L + L Q G SR +Y L D+ YYGY +L L +F
Sbjct: 234 PNLQLLRTRITDTIRILGDLSTLGQPGKSRADYTDLLLNDICVYYGYTPYLAEKLFSLFT 293
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRPI +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 294 PMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 353
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTY +ALM+NTG I
Sbjct: 354 PLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSIL 413
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ +R K L N+HR+G NTIV N D PK +G DRVLLDAPCSGTGVIS
Sbjct: 414 ANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIG--GFDRVLLDAPCSGTGVIS 471
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 472 KDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVEENEGVVQY 531
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL +FG GF + +F + TRR+YPH N+DGFFV KLKK
Sbjct: 532 ALRKRPNVKIVDTGLGNFGTPGFKSYMNKKFDEKMPLTRRYYPHRENVDGFFVCKLKK-- 589
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNGDK 413
GP P+ET ++ S S G++
Sbjct: 590 ------TGPSPAETTQKAPGTSEGSGGEE 612
>gi|209881801|ref|XP_002142338.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
gi|209557944|gb|EEA07989.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
Length = 539
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/365 (54%), Positives = 269/365 (73%), Gaps = 10/365 (2%)
Query: 29 DLPNLQRRIKEIVRVL-------SNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGA 81
DL ++ RIK V L ++ +L SR E + +L D+ YGYN L
Sbjct: 71 DLETIKTRIKTTVDFLESRQNDNTSNSNLKYAELSRSEILSKLADDVSLLYGYNVELAEY 130
Query: 82 LVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLV 141
L+ +F P E +E ++ E RP+ +RTN LKTRRRDLA LI+RG N+DP+ +W+KVGL+
Sbjct: 131 LLNLFSPKEAIEFFDANENQRPLTIRTNMLKTRRRDLAHKLISRGANVDPIGEWTKVGLI 190
Query: 142 VYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMK 201
VY S VPIGATPEY++G+YM+QSASS +PVMALAPQ E+++DMAAAPGGKTTYI LMK
Sbjct: 191 VYSSSVPIGATPEYLSGYYMIQSASSLIPVMALAPQPGEKILDMAAAPGGKTTYIGQLMK 250
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N+G++YAN+++ R +L ANLHRMG+ N++V N DG EL K L +DR+LLDAPC+G
Sbjct: 251 NSGILYANDLRRDRCTALIANLHRMGICNSVVINMDGKELGKYLP--KLDRILLDAPCTG 308
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
G+IS+D SVK ++++++ + S LQK+L+ +AIDM+DANSK+GG++VYSTCSI ENE
Sbjct: 309 LGIISRDPSVKVKRTIKELNEYSLLQKELLKSAIDMIDANSKTGGFVVYSTCSISFEENE 368
Query: 322 AVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK-TRRFYPHVHNMDGFFVAKL 380
AV+DY LK R+VKLVP G++ G G +FRE+R +P++ K +RR YPH +NMDGFFVAK
Sbjct: 369 AVVDYILKVRNVKLVPLGIEIGSPGLSKFRENRLNPTISKYSRRIYPHKNNMDGFFVAKF 428
Query: 381 KKMSN 385
KK+SN
Sbjct: 429 KKISN 433
>gi|323449480|gb|EGB05368.1| hypothetical protein AURANDRAFT_59367 [Aureococcus anophagefferens]
Length = 373
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/353 (55%), Positives = 265/353 (75%), Gaps = 4/353 (1%)
Query: 36 RIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELI 95
RI+E + VL +FK+ ++KG +R EY+++L DL SYYGY + L + +F P E +E +
Sbjct: 17 RIQENLGVLGHFKERAKKGKARAEYLRELGEDLTSYYGYLQELTELFLTIFSPSECVEFM 76
Query: 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEY 155
++ +KPRP+ +RTNTLKTRR+DLA LI RGV+L+P++ WSKV L + +S VP+GATPEY
Sbjct: 77 DANDKPRPVVIRTNTLKTRRKDLAQTLIKRGVHLEPMAAWSKVALKITESSVPVGATPEY 136
Query: 156 MAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR 215
+AG YMLQSA+S PV+AL P+ ERV+++AAAPGGK++Y A LMKN+G + N++K R
Sbjct: 137 LAGHYMLQSAASQCPVLALGPEPGERVLELAAAPGGKSSYCAQLMKNSGTLVCNDLKKER 196
Query: 216 LKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSK 275
K+ ANLHR+GV+N +VC +DG P V+G DRVLLDAPC+G GVIS+D+S+K ++
Sbjct: 197 HKATVANLHRLGVSNAVVCCHDGRAFPGVMG--GFDRVLLDAPCTGLGVISRDQSIKGTR 254
Query: 276 SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
+LED++K ++LQK+LILAAID VD K G +VYSTCS+ V ENE V+ YAL KR+VKL
Sbjct: 255 TLEDVKKLAHLQKELILAAIDSVD--DKKAGVVVYSTCSVAVLENEDVVQYALDKRNVKL 312
Query: 336 VPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK 388
V GL F FVR + R+HPS+ RRFYPH HNMDGFFVAKL+K+S K
Sbjct: 313 VDAGLPFACDAFVRCGQKRYHPSMALARRFYPHTHNMDGFFVAKLQKLSPKDK 365
>gi|449019801|dbj|BAM83203.1| RNA cytosine methyltransferase [Cyanidioschyzon merolae strain 10D]
Length = 677
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/392 (52%), Positives = 268/392 (68%), Gaps = 12/392 (3%)
Query: 26 QPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEM 85
+P L L++ I+ V+ LS + SR E V +L + + Y Y L E+
Sbjct: 220 RPGHLEELKQAIQNRVQELSEPAPQRKGARSRSELVTELLEMICAAYDYLPSLAQRFAEL 279
Query: 86 FPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145
FPP EL+ IE+ E PRP+ +RTNTLK RR+ LA LI RG+N+DP+ WS VGL VY S
Sbjct: 280 FPPTELLAFIEANESPRPLVIRTNTLKVRRQRLAMALIARGMNVDPVGSWSPVGLTVYQS 339
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
+VP+GATPEY+AG+YM+Q+A+SFLPVMALAP+E ER++DMAAAPGGK TYIA LMK TGL
Sbjct: 340 EVPVGATPEYLAGYYMIQAAASFLPVMALAPREHERILDMAAAPGGKATYIAQLMKGTGL 399
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG---------LNTVDRVLLD 256
++AN++ R K+L ANL R+GV N +V + DG L K + DRVLLD
Sbjct: 400 LFANDVNRERCKALVANLQRLGVPNAVVMSLDGRTLSKSANGSPSEHGGFRHFFDRVLLD 459
Query: 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316
APC+GTGVI+ D S+K ++ I++C YLQKQL+LAA+D + S++G +VYSTCSI+
Sbjct: 460 APCTGTGVIAHDASIKHTRDEASIRRCVYLQKQLLLAAVDACNPRSETGAVVVYSTCSIL 519
Query: 317 VTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
V ENE V+DY L+K VK+V G+ FG GF+RFRE RFHPSL + RR+YPHVHNMDG
Sbjct: 520 VDENEEVVDYVLRKLGSRVKVVSTGIPFGLPGFIRFREKRFHPSLAEARRYYPHVHNMDG 579
Query: 375 FFVAKLKKMSNSKKTSAGPQPSETVEQQTPES 406
FFV KL+ + S T+ S TVE+ +PE+
Sbjct: 580 FFVCKLRVLPESNTTTKA-STSRTVEESSPET 610
>gi|296817387|ref|XP_002849030.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Arthroderma otae CBS 113480]
gi|238839483|gb|EEQ29145.1| nucleolar protein NOP2 [Arthroderma otae CBS 113480]
Length = 683
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/387 (54%), Positives = 262/387 (67%), Gaps = 14/387 (3%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P+L L+ RI + +R+L + L Q G SR +Y L D+ YYGY +L L +F
Sbjct: 238 PNLQLLRTRITDTIRILGDLSTLGQPGKSRADYTDLLLNDICVYYGYTPYLAEKLFSLFT 297
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRPI +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 298 PMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 357
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTY +ALM+NTG I
Sbjct: 358 PLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSIL 417
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ +R K L N+HR+G NTIV N D PK +G DRVLLDAPCSGTGVIS
Sbjct: 418 ANDASKTRAKGLIGNIHRLGCKNTIVSNLDARTAFPKAVG--GFDRVLLDAPCSGTGVIS 475
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 476 KDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVEENEGVVQY 535
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL FG GF + +F + TRR+YPH N+DGFFV KLKK
Sbjct: 536 ALRKRPNVKIVDTGLGSFGTPGFKSYMNKKFDDKMPLTRRYYPHRENVDGFFVCKLKK-- 593
Query: 385 NSKKTSAGPQPSETVEQQTPESNVSNG 411
GP P+ET Q+ P + S G
Sbjct: 594 ------TGPSPAETT-QKVPGTAESEG 613
>gi|221484442|gb|EEE22738.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221505587|gb|EEE31232.1| ribosomal RNA small subunit methyltransferase B, putative
[Toxoplasma gondii VEG]
Length = 804
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 229/477 (48%), Positives = 305/477 (63%), Gaps = 42/477 (8%)
Query: 29 DLPNLQRRIKEIVRVLSNF----------------------KDLSQKG--TSRKEYVQQL 64
DL +++RI+E + L+NF +D+ G +R++ + QL
Sbjct: 214 DLAVVKQRIEETLHNLANFVQFRVSQENKRRKSVAHQSSSKEDIGADGGVITRRQLIDQL 273
Query: 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN 124
D+ SYY Y L+ +++F P E E+ E+ RP+ LRTN+LKTRRRDLA LI
Sbjct: 274 AADIVSYYQYRPELVEYFLQLFKPQEAYAFFEANEENRPMTLRTNSLKTRRRDLAAALIA 333
Query: 125 RGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
RG N+DPL +W+KVGL VY+S VP+GATPEY+AG YMLQSA+S +PVMALAPQ E+V+D
Sbjct: 334 RGCNVDPLGEWTKVGLKVYESTVPVGATPEYLAGHYMLQSAASLIPVMALAPQPGEKVVD 393
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAAAPGGKTTYIA L+KN G+++AN+ K R SL ANLHR+GVTN IV DG LP +
Sbjct: 394 MAAAPGGKTTYIAQLLKNEGILFANDAKKERCTSLMANLHRLGVTNCIVSCVDGRTLPTM 453
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
L +DR LLDAPC+G+G+I++D S+K + ED + S LQKQL+ AA+D V+A+S +
Sbjct: 454 --LPPMDRALLDAPCTGSGIIARDPSIKVKRKPEDFAEHSKLQKQLLCAAVDAVNADSPT 511
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE-KTR 363
GGYIVYSTCSI V ENE V+DY L R+VKLVP G+D G G FR +FH S+ TR
Sbjct: 512 GGYIVYSTCSISVEENEQVVDYILTARNVKLVPLGVDIGVPGLSGFRGQQFHNSVPLYTR 571
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
RFYPHV+N DGFFVAK KK+SN K + + P V + + T E +Q++
Sbjct: 572 RFYPHVNNFDGFFVAKFKKLSNKKPERV----QKDRRKHNPFVKVWDKEHWTPECMDQLM 627
Query: 424 M--KKATTKAK-DLKKKTSGLAENGNVESPSNEKRRKK--RKFPSREE---ISKVRE 472
+K TT++K + K+ SG G+ P E+++K + PS E IS VRE
Sbjct: 628 TFEEKETTESKTSITKENSG---KGSALLPMRERKQKSGADRVPSNAESKRISSVRE 681
>gi|237837991|ref|XP_002368293.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
ME49]
gi|211965957|gb|EEB01153.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
ME49]
Length = 804
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/477 (47%), Positives = 305/477 (63%), Gaps = 42/477 (8%)
Query: 29 DLPNLQRRIKEIVRVLSNF----------------------KDLSQKG--TSRKEYVQQL 64
DL +++RI+E + L+NF +D+ G +R++ + QL
Sbjct: 214 DLAVVKQRIEETLHNLANFVQFRVSQENKRRKSVAHQSSSKEDIGADGGVITRRQLIDQL 273
Query: 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN 124
D+ SYY Y L+ +++F P E E+ E+ RP+ LRTN+LKTRRRDLA LI
Sbjct: 274 AADIVSYYQYRPELVEYFLQLFKPQEAYAFFEANEENRPMTLRTNSLKTRRRDLAAALIA 333
Query: 125 RGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
RG N+DPL +W+KVGL VY+S VP+GATPEY+AG YMLQSA+S +PVMALAPQ E+V+D
Sbjct: 334 RGCNVDPLGEWTKVGLKVYESTVPVGATPEYLAGHYMLQSAASLIPVMALAPQPGEKVVD 393
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAAAPGGKTTYIA L+KN G+++AN+ K R SL ANLHR+GVTN IV DG LP +
Sbjct: 394 MAAAPGGKTTYIAQLLKNEGILFANDAKKERCTSLMANLHRLGVTNCIVSCVDGRTLPTM 453
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
L +DR LLDAPC+G+G+I++D S+K + ED + S LQKQL+ AA+D V+A+S +
Sbjct: 454 --LPPMDRALLDAPCTGSGIIARDPSIKVKRKPEDFAEHSKLQKQLLCAAVDAVNADSPT 511
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE-KTR 363
GGYIVYSTCS+ V ENE V+DY L R+VKLVP G+D G G FR +FH S+ TR
Sbjct: 512 GGYIVYSTCSVSVEENEQVVDYILTARNVKLVPLGVDIGVPGLSGFRGQQFHNSVPLYTR 571
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
RFYPHV+N DGFFVAK KK+SN K + + P V + + T E +Q++
Sbjct: 572 RFYPHVNNFDGFFVAKFKKLSNKKPERV----QKDRRKHNPFVKVWDKEHWTPECMDQLM 627
Query: 424 M--KKATTKAK-DLKKKTSGLAENGNVESPSNEKRRKK--RKFPSREE---ISKVRE 472
+K TT++K + K+ SG G+ P E+++K + PS E IS VRE
Sbjct: 628 TFEEKETTESKTSITKENSG---KGSALLPMRERKQKSGADRVPSNAESKRISSVRE 681
>gi|425775228|gb|EKV13508.1| Nucleolar RNA methyltransferase (Nop2), putative [Penicillium
digitatum Pd1]
gi|425779664|gb|EKV17704.1| Nucleolar RNA methyltransferase (Nop2), putative [Penicillium
digitatum PHI26]
Length = 732
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/360 (55%), Positives = 256/360 (71%), Gaps = 5/360 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L++RI + +R+L + K L G SR +Y+ L D+ +YYGY FL L +F
Sbjct: 209 PDLQLLRQRITDTIRILGDLKTLGLPGKSRTDYIDLLLDDICTYYGYTRFLAEKLFNLFT 268
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 269 PREAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 328
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMA+APGGKTTY++ALM+NTG +
Sbjct: 329 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASAPGGKTTYMSALMRNTGCVV 388
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV N D PK +G DRVLLDAPC+GTGVIS
Sbjct: 389 ANDASKPRAKGLIGNIHRLGCKNTIVTNMDARTAFPKAMG--GFDRVLLDAPCTGTGVIS 446
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++Q+QL+LAAID VD SK+GGY+VYSTCS+ V ENEAV+ Y
Sbjct: 447 KDPGVKTSKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYVVYSTCSVTVEENEAVVQY 506
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L+KR +VK+V GL +FG GF+ + F P + TRR++PH N+DGF+V KLKK +
Sbjct: 507 VLRKRPNVKIVDTGLGNFGSPGFLSYMGKSFDPKMALTRRYFPHRENVDGFYVCKLKKTA 566
>gi|440299348|gb|ELP91916.1| hypothetical protein EIN_399460 [Entamoeba invadens IP1]
Length = 521
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/380 (52%), Positives = 282/380 (74%), Gaps = 7/380 (1%)
Query: 4 NIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQ 63
N+ EE + LP+ +E+ + ++ D+ + RI+E+V VL++FK+ ++G SR+EYV
Sbjct: 142 NVAEEQ-RYVLPSGQEVVKSREFG-DMATIGTRIREVVAVLNDFKNKREEGRSRQEYVNL 199
Query: 64 LKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI 123
L D+ +YY NEFL +V++F P ++ +E+ E PRP +R NTLK++RRDLA LI
Sbjct: 200 LIQDIQTYYSCNEFLANFVVDLFGPKAAVDFMEANETPRPTTIRVNTLKSKRRDLAQKLI 259
Query: 124 NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
+GVN+D + +W K GLVVY+SQ+PIGAT EY++G Y+LQS+SS+ V+ALAPQ ER++
Sbjct: 260 AKGVNVD-MIEWCKSGLVVYESQIPIGATVEYLSGMYILQSSSSWAAVIALAPQPNERIL 318
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DM +APGGK+T+IAALMKNTG + AN++ RLK++ N+ R+G+TNTIV +YDG+E PK
Sbjct: 319 DMCSAPGGKSTHIAALMKNTGTLVANDVSKDRLKAVVGNVQRLGITNTIVTSYDGHEFPK 378
Query: 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303
V+G DRVL+DAPC+G G+ISKD SVK SKS D++ S +QK+L+L AID V+ S
Sbjct: 379 VMG--GFDRVLVDAPCTGLGIISKDSSVKLSKSEADLRTYSKMQKELLLHAIDSVNPKSA 436
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLD--FGRQGFVRFREHRFHPSLEK 361
+GGY+VYSTCS+ V ENEAV+DYAL+KR+VK+VP L G G V ++++ F+PS++
Sbjct: 437 TGGYVVYSTCSVSVQENEAVVDYALRKRNVKVVPIDLQEGVGEPGMVGWKQYHFNPSIKL 496
Query: 362 TRRFYPHVHNMDGFFVAKLK 381
RRF PHV NMDGFFV KLK
Sbjct: 497 ARRFLPHVQNMDGFFVCKLK 516
>gi|255955391|ref|XP_002568448.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590159|emb|CAP96330.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 733
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/360 (56%), Positives = 255/360 (70%), Gaps = 5/360 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L++RI + +R+L + K L G SR +Y+ L D+ +YYGY FL L +F
Sbjct: 210 PDLQLLRQRITDTIRILGDLKTLGLPGKSRTDYIDLLLDDICTYYGYTRFLAEKLFNLFT 269
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 270 PREAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 329
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMA+APGGKTTY++ALM+NTG +
Sbjct: 330 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASAPGGKTTYMSALMRNTGCVV 389
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV N D PK +G DRVLLDAPC+GTGVIS
Sbjct: 390 ANDASKPRAKGLIGNIHRLGCKNTIVTNMDARTAFPKAMG--GFDRVLLDAPCTGTGVIS 447
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++Q+QL+LAAID VD SK+GGYIVYSTCS+ V ENEAV+ Y
Sbjct: 448 KDPGVKTSKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYIVYSTCSVTVEENEAVVQY 507
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L+KR +VK+V GL FG GF+ + F P + TRR++PH N+DGF+V KLKK +
Sbjct: 508 VLRKRPNVKIVDTGLGGFGSPGFLSYMGKTFDPKMALTRRYFPHRENVDGFYVCKLKKTA 567
>gi|344228747|gb|EGV60633.1| NOL1/NOP2/sun family putative RNA met [Candida tenuis ATCC 10573]
Length = 357
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/351 (59%), Positives = 262/351 (74%), Gaps = 9/351 (2%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
ME E+ E RPI +RTNTLKTRRR+LA L+NRGVNL P+ W+KVGL V+DSQVPIGA
Sbjct: 1 MEFFEANEIARPITIRTNTLKTRRRELAQTLVNRGVNLQPIGTWTKVGLQVFDSQVPIGA 60
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY+AG Y+LQ+ASSFLPVMAL PQE ER++DMAAAPGGKTTYI+ALMKNTG ++AN+
Sbjct: 61 TPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 120
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
+R KSL AN+HR+G NTIVCNYD E PKV+G DR+LLDAPCSGTGVI+KDESV
Sbjct: 121 NKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG--GFDRILLDAPCSGTGVIAKDESV 178
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K +++ +D + +LQKQLIL+AID VDANS +GG IVYSTCS+ + ENEAV+DYAL+KR
Sbjct: 179 KVNRNEKDFIQIPHLQKQLILSAIDSVDANSATGGVIVYSTCSVAIEENEAVVDYALRKR 238
Query: 332 -DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK-- 388
+VKLV L G+ GFV +R F SL TRR+YPH +N+DGF+VAK KK++ S
Sbjct: 239 PNVKLVETHLQVGKPGFVSYRGKHFDSSLSLTRRYYPHTYNVDGFYVAKFKKIAPSPHDV 298
Query: 389 TSAGPQPSETVEQ-QTPESNVSNGDKKTEENSEQV-LMKKATTKAKDLKKK 437
+ AG E + + + E + N D +N E LM+K+ ++ +KKK
Sbjct: 299 SKAGANEKELLARAEAEEEGIINDDFAEFDNDEDADLMQKSIKRS--MKKK 347
>gi|315049127|ref|XP_003173938.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Arthroderma gypseum CBS
118893]
gi|311341905|gb|EFR01108.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS
118893]
Length = 696
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/374 (55%), Positives = 256/374 (68%), Gaps = 5/374 (1%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
P+L L+ RI + +R+L + L Q G SR +Y L D+ YYGY +L L +F
Sbjct: 235 PNLQLLRTRITDTIRILGDLSTLGQPGKSRTDYTDLLLNDICVYYGYTPYLAEKLFSLFT 294
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P+E E+ E PRPI +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 295 PMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPV 354
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPGGKTTY +ALM+NTG I
Sbjct: 355 PLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSIL 414
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ +R K L N+HR+G NTIV N D PK +G DRVLLDAPCSGTGVIS
Sbjct: 415 ANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIG--GFDRVLLDAPCSGTGVIS 472
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD VKTSK+ D ++QKQL+LAAID + SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 473 KDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVEENEGVVQY 532
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
AL+KR +VK+V GL FG GF + +F + TRR+YPH N+DGFFV KLKK+
Sbjct: 533 ALRKRPNVKIVDTGLGSFGTPGFKSYMNKKFDDKMPLTRRYYPHRENVDGFFVCKLKKIG 592
Query: 385 NSKKTSAGPQPSET 398
S AG P +
Sbjct: 593 PSPAEVAGKAPGTS 606
>gi|258571405|ref|XP_002544506.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704]
gi|237904776|gb|EEP79177.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704]
Length = 1027
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/397 (52%), Positives = 266/397 (67%), Gaps = 13/397 (3%)
Query: 5 IREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQL 64
I +E+ + L + + + PD L+ RI + +R+L + L Q SR +Y L
Sbjct: 162 ISKETAQMCLEMQTQANLPQSLAPDSQLLRTRITDTIRILGDLATLGQPRKSRSDYTDLL 221
Query: 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN 124
D+ +YY Y +L L +F P+E E+ E PRP+ +RTNTL+T RR LA LIN
Sbjct: 222 LQDICTYYSYTPYLAEKLYSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALIN 281
Query: 125 RGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
RGV L+P+ KWSKVGL V++S VP+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++D
Sbjct: 282 RGVVLEPVGKWSKVGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILD 341
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPK 243
MAAAPGGKTTY++ALM+NTG + AN+ R K L N+HR+G NTIV N D PK
Sbjct: 342 MAAAPGGKTTYMSALMRNTGCVMANDANKERAKGLIGNIHRLGCKNTIVTNLDARTAFPK 401
Query: 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303
LG DRVLLDAPCSGTGVISKD SVKTSK+ D + QKQL+LAAID + SK
Sbjct: 402 ALG--GFDRVLLDAPCSGTGVISKDPSVKTSKTERDFMAIPHTQKQLLLAAIDSTNHASK 459
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLD-FGRQGFVRFREHRFHPSLEK 361
+GGYIVYSTCS+ V ENEAV+ Y L+KR +V++V GL FG +GF ++ +F P +
Sbjct: 460 TGGYIVYSTCSVAVEENEAVVQYVLRKRPNVRIVDTGLGTFGSEGFKSYKGKQFDPKMAL 519
Query: 362 TRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSET 398
TRR++PH N+DGF+V KLKK GP P+ET
Sbjct: 520 TRRYFPHRENVDGFYVCKLKKF--------GPSPAET 548
>gi|156085270|ref|XP_001610117.1| nucleolar protein-like protein with NOL1/NOP2/sun family RNA
methylase domain [Babesia bovis T2Bo]
gi|154797369|gb|EDO06549.1| nucleolar protein-like protein with NOL1/NOP2/sun family putative
RNA methylase domain [Babesia bovis]
Length = 515
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/432 (48%), Positives = 291/432 (67%), Gaps = 15/432 (3%)
Query: 5 IREESDEFRLPTKEEIE-EEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTS---RKEY 60
I E+ DE L + + K DL ++ RI+ I +LSN+ S+ G + R Y
Sbjct: 36 IVEDGDETYLDDIDSGDLHSKVDLTDLSAVKSRIESICGLLSNWSAASKAGIATKKRGSY 95
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+++L+ + +YYGY++ + +++F P E ++ E+ E+P P+ LR NTLKTRR++LA
Sbjct: 96 LRELQEMVTAYYGYSDEMSDYFLKLFSPTEAIQFFEANERPLPMTLRVNTLKTRRKELAA 155
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LI RG N+DP+ WSK GLVV+ SQVPIGATPEY+AG YM+QSA+S +PV+AL+P++ E
Sbjct: 156 ALIARGANVDPVGDWSKEGLVVHSSQVPIGATPEYLAGHYMMQSAASLIPVLALSPKDGE 215
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+V+D+AAAPGGKTT+IA +M N G++YAN+ R +L AN+HR+G+TNTIV NYDG +
Sbjct: 216 KVLDIAAAPGGKTTHIAQMMNNGGILYANDFNKERCTALVANIHRLGITNTIVTNYDGLD 275
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
L + L +DRVL DAPCSG GVISKD SVK ++L D+++ + LQK+L+L IDM+
Sbjct: 276 LKGI--LPPLDRVLCDAPCSGLGVISKDPSVKVKRTLMDLKQNADLQKRLLLCCIDMLSV 333
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL- 359
N K G +VYSTCSI V ENE VIDYAL+ RDVKLVP G++ G FR FHPS+
Sbjct: 334 NVKKGNCVVYSTCSISVEENEQVIDYALRMRDVKLVPLGVEAGSPALSSFRGRHFHPSIG 393
Query: 360 EKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENS 419
+ RRFYPH+HN+DGFFVAKL K+S+ P+ T + P N D ++ N+
Sbjct: 394 QHARRFYPHLHNLDGFFVAKLVKLSSK-------IPTLTKRYREPRRNAPE-DSTSQSNT 445
Query: 420 EQVLMKKATTKA 431
++V + KA A
Sbjct: 446 DEVKISKAMPGA 457
>gi|342320777|gb|EGU12716.1| Nucleolar protein NOP2 [Rhodotorula glutinis ATCC 204091]
Length = 749
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/357 (56%), Positives = 255/357 (71%), Gaps = 6/357 (1%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDL-SQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
DL +++R++ RVL+++K+L +Q G SR + +QL D+ Y+GY FL L E+F
Sbjct: 313 DLRQVEKRMRTAARVLAHWKELGAQAGMSRSDLREQLISDICQYHGYTPFLAEKLFEVFG 372
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL-SKWSKVGLVVYD-S 145
P E +E + + PRP+ +R NTLKTRRRDLA LINRGVNL PL WSKVGL V+ S
Sbjct: 373 PEEALEFFAASDTPRPLTIRVNTLKTRRRDLAQALINRGVNLQPLEGGWSKVGLQVFSGS 432
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
VPIGATPEY+AG Y+LQ+ASSFLPVMAL PQ ER +DM+AAPGGKTTY++ALM NTG
Sbjct: 433 SVPIGATPEYLAGHYILQAASSFLPVMALDPQPHERCLDMSAAPGGKTTYMSALMGNTGE 492
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
++AN+ R+K L N+ R+G N ++ N DG E PK++G DRVLLDAPCSGTGVI
Sbjct: 493 VWANDSSRGRIKGLGGNVARLGCRNVVITNVDGREFPKIMG--GFDRVLLDAPCSGTGVI 550
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
SKD SVK +K+ D S+LQKQL+L AID V NS+ GGY+ YSTCS+ V ENEAV+
Sbjct: 551 SKDPSVKVNKTERDFMLLSHLQKQLLLCAIDSVSPNSEKGGYVCYSTCSVTVEENEAVVS 610
Query: 326 YALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
YAL+KR VKLV GL FG+ GF ++ F +E TRRFYPHV N+DGFFV+ K
Sbjct: 611 YALRKRPHVKLVDTGLPFGKPGFKSYKGKEFGKGIELTRRFYPHVANVDGFFVSVFK 667
>gi|401401630|ref|XP_003881058.1| ribosomal RNA small subunit methyltransferase F (RRNA(Cytosine-C)),
related [Neospora caninum Liverpool]
gi|325115470|emb|CBZ51025.1| ribosomal RNA small subunit methyltransferase F (RRNA(Cytosine-C)),
related [Neospora caninum Liverpool]
Length = 803
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/452 (47%), Positives = 283/452 (62%), Gaps = 29/452 (6%)
Query: 29 DLPNLQRRIKEIVRVLSNF--------------------KDLSQKG--TSRKEYVQQLKL 66
DL +++R+ E + L+NF KD G +R++ + +L
Sbjct: 215 DLAAVKQRMGETLHSLANFVQFRVSQENKRRKNLGNQRSKDTDADGGVVTRRQLMDKLAA 274
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
D+ +YY Y L+ +++F P E E+ E+ RP+ LRTN+LKTRRRDLA LI RG
Sbjct: 275 DIVTYYQYRPELVEYFLQLFKPQEAYAFFEANEENRPMTLRTNSLKTRRRDLAAALIARG 334
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
N+DPL W+KVGL VY+S VP+GATPEY+AG YMLQSA+S +PVMALAPQ E+V+DMA
Sbjct: 335 CNVDPLGDWTKVGLKVYESSVPVGATPEYLAGHYMLQSAASLIPVMALAPQPGEKVVDMA 394
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
AAPGGKTTYIA L+KN G+++AN+ K R SL ANLHR+GVTN IV DG LP +
Sbjct: 395 AAPGGKTTYIAQLLKNEGILFANDAKKERCTSLMANLHRLGVTNCIVSCVDGRTLPTI-- 452
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
L +DR LLDAPC+G+G+I++D S+K + ED + S LQKQL+ AA+D V+A+S +GG
Sbjct: 453 LPPMDRALLDAPCTGSGIIARDPSIKVKRKPEDFAEHSKLQKQLLCAAVDAVNADSPTGG 512
Query: 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE-KTRRF 365
YIVYSTCSI V ENE V+DY L R VKLVP G+D G G FR +FH S+ TRRF
Sbjct: 513 YIVYSTCSISVEENEQVVDYILTARKVKLVPLGVDIGVPGLSGFRGRQFHHSIPLYTRRF 572
Query: 366 YPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMK 425
YPHV+N DGFFVAK KK+SN K + + P V + + T E +Q++
Sbjct: 573 YPHVNNFDGFFVAKFKKLSNKKPERV----QKDRRKHNPFVKVWDKEHWTPECMDQLMTF 628
Query: 426 KATTKAKDLKKKTSGLAENGNVESPSNEKRRK 457
K + K T NG+ P E+ K
Sbjct: 629 PEDDKTEMNKPNTKATNRNGSAPPPKRERGHK 660
>gi|154277144|ref|XP_001539413.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
gi|150412998|gb|EDN08381.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
Length = 1980
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 263/388 (67%), Gaps = 20/388 (5%)
Query: 19 EIEEEKQQP-------PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSY 71
E+ EE QP PDL L+ RI E R+L + L + SR +Y L D+ +Y
Sbjct: 1564 EVFEEDGQPQKQTGMAPDLQLLRTRIAETTRILGDLPSLGKPSKSRADYTNLLLSDICNY 1623
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
YGY FL L ++F P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P
Sbjct: 1624 YGYTPFLAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEP 1683
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ KWSKVGL +++S +P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMAAAPGG
Sbjct: 1684 VGKWSKVGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGG 1743
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTV 250
KTTYI+ALM+NTG + AN+ R K L N+HR+G NTI+ N D + PK+LG
Sbjct: 1744 KTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILG--GF 1801
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
DRVLLDAPCSGTGVISKD ++KTSKS D ++QKQL+LAAID + SK+GGYIVY
Sbjct: 1802 DRVLLDAPCSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIVY 1861
Query: 311 STCSIMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPH 368
STCS+ V ENEAV+ YAL+ R +VK+V GL +FG GF + +F + +RR++PH
Sbjct: 1862 STCSVTVEENEAVVQYALRNRPNVKIVDTGLGNFGTPGFKSYMGKKFDDKMSLSRRYFPH 1921
Query: 369 VHNMDGFFVAKLKKMSNSKKTSAGPQPS 396
N+DGF+V KLKK GP PS
Sbjct: 1922 RENVDGFYVCKLKK--------TGPSPS 1941
>gi|225554205|gb|EEH02543.1| nucleolar protein NOP2 [Ajellomyces capsulatus G186AR]
Length = 704
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/385 (53%), Positives = 264/385 (68%), Gaps = 15/385 (3%)
Query: 17 KEEIEEEKQ--QPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGY 74
+E+ + +KQ PDL L+ RI E R+L + L + SR +Y L D+ +YYGY
Sbjct: 204 EEDGQAQKQTGMAPDLQLLRTRIAETTRILGDLPSLGEPSKSRADYTNLLLSDICTYYGY 263
Query: 75 NEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
FL L ++F P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ K
Sbjct: 264 TPFLAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGK 323
Query: 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTT 194
WSKVGL +++S +P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMAAAPGGKTT
Sbjct: 324 WSKVGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTT 383
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRV 253
YI+ALM+NTG + AN+ R K L N+HR+G NTI+ N D + PK+LG DRV
Sbjct: 384 YISALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILG--GFDRV 441
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD ++KTSKS D ++QKQL+LAAID + SK+GGYIVYSTC
Sbjct: 442 LLDAPCSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIVYSTC 501
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
S+ V ENEAV+ YAL+ R +VK+V GL +FG GF + +F + +RR++PH N
Sbjct: 502 SVTVEENEAVVQYALRNRPNVKIVDTGLGNFGTPGFKSYMGKKFDDKMSLSRRYFPHKEN 561
Query: 372 MDGFFVAKLKKMSNSKKTSAGPQPS 396
+DGF+V KLKK GP PS
Sbjct: 562 VDGFYVCKLKK--------TGPSPS 578
>gi|323303251|gb|EGA57049.1| Nop2p [Saccharomyces cerevisiae FostersB]
Length = 509
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/318 (62%), Positives = 244/318 (76%), Gaps = 2/318 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR 331
S+ V E+EAVIDYAL K+
Sbjct: 479 SVAVEEDEAVIDYALXKK 496
>gi|240277116|gb|EER40626.1| nucleolar protein NOP2 [Ajellomyces capsulatus H143]
gi|325096756|gb|EGC50066.1| nucleolar protein NOP2 [Ajellomyces capsulatus H88]
Length = 670
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/383 (54%), Positives = 265/383 (69%), Gaps = 9/383 (2%)
Query: 17 KEEIEEEKQ--QPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGY 74
+E+ + +KQ PDL L+ RI E R+L + L + SR +Y L D+ +YYGY
Sbjct: 205 EEDGQAQKQTGMAPDLQLLRTRIAETTRILGDLPSLGKPTKSRADYTNLLLSDICTYYGY 264
Query: 75 NEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
FL L ++F P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ K
Sbjct: 265 TPFLAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGK 324
Query: 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTT 194
WSKVGL +++S +P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ERV+DMAAAPGGKTT
Sbjct: 325 WSKVGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTT 384
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRV 253
YI+ALM+NTG + AN+ R K L N+HR+G NTI+ N D + PK+LG DRV
Sbjct: 385 YISALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILG--GFDRV 442
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD ++KTSKS D ++QKQL+LAAID + SK+GGYIVYSTC
Sbjct: 443 LLDAPCSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIVYSTC 502
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
S+ V ENEAV+ YAL+ R +VK+V GL +FG GF + +F + +RR++PH N
Sbjct: 503 SVTVEENEAVVQYALRNRPNVKIVDTGLGNFGTPGFKSYMGKKFDDKMSLSRRYFPHREN 562
Query: 372 MDGFFVAKLKKM--SNSKKTSAG 392
+DGF+V KLKK S S SAG
Sbjct: 563 VDGFYVCKLKKTRPSPSWNKSAG 585
>gi|71030964|ref|XP_765124.1| nuclear protein [Theileria parva strain Muguga]
gi|68352080|gb|EAN32841.1| nuclear protein, putative [Theileria parva]
Length = 428
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/384 (52%), Positives = 272/384 (70%), Gaps = 8/384 (2%)
Query: 4 NIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQ 63
N SD L E E DL +++ RI+ I +LS +K L K SR+ Y+ +
Sbjct: 40 NFNLASDSVNLDEITEAEGRSVDLMDLSSVKERIENICGILSKWKALDTK-RSRESYIDE 98
Query: 64 LKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI 123
LK + YYGY+E L ++F P+E ++ ++ E+P P+ +RTNTLKT+R+DLA LI
Sbjct: 99 LKKLVTVYYGYSEELSDYFFKLFNPLEAIQFFDANEQPLPLTIRTNTLKTKRKDLAVSLI 158
Query: 124 NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
NRG N+DP+ W+K GLVV+ S+VPIGATPEY+AG Y+LQSASS +PV++LAP+ E V+
Sbjct: 159 NRGANVDPIGDWTKEGLVVHSSKVPIGATPEYLAGHYILQSASSLIPVLSLAPRPNELVL 218
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DM AAPGGKTT+I LM NTG+++AN+ SR KSL +N+HR+G+ N+IVCNY G+EL +
Sbjct: 219 DMCAAPGGKTTHIGQLMNNTGILFANDSNKSRCKSLVSNIHRLGILNSIVCNYKGDELVR 278
Query: 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303
VL +DR+LLDAPCSG GVIS+D S+K + L+D+Q+ S LQKQL+ A+I++V N
Sbjct: 279 VLP--KMDRILLDAPCSGLGVISRDPSIKVKRGLKDLQRNSNLQKQLLTASINLVKPN-- 334
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK-T 362
G IVYSTCS+ + ENE VI YA++K +VKLVP GL+ G F FR +FHPS+ K
Sbjct: 335 --GIIVYSTCSLSIEENEQVIHYAIRKFNVKLVPLGLEIGTPAFSSFRGRKFHPSIAKFA 392
Query: 363 RRFYPHVHNMDGFFVAKLKKMSNS 386
RRFYPH H++DGFFVAKL K+ NS
Sbjct: 393 RRFYPHKHSLDGFFVAKLIKLPNS 416
>gi|294887892|ref|XP_002772268.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus
marinus ATCC 50983]
gi|239876343|gb|EER04084.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus
marinus ATCC 50983]
Length = 658
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/403 (47%), Positives = 287/403 (71%), Gaps = 16/403 (3%)
Query: 29 DLPNLQRRIKEIVRVLSNFKD-LSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
D+P L++R++E++R+L+ K+ + ++G + KE ++L +YYGYNE L +++MF
Sbjct: 189 DIPTLKKRLEEVIRMLAAGKEAIRKQGCTSKELREELARLCANYYGYNEELAAYILDMFA 248
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E ++L E+ ++PRP+ +R NT+KTRRR LA LI RG ++P +W+KVGL V +S+V
Sbjct: 249 PGEAVQLFEANDRPRPMTIRANTIKTRRRLLAQQLIARGCQVEPTGEWTKVGLTVKESKV 308
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
PIGATPEY++G YMLQSASSF+PV AL Q E V+DM+AAPGGKTTYI +M+N G+++
Sbjct: 309 PIGATPEYLSGRYMLQSASSFVPVQALNAQPGETVLDMSAAPGGKTTYIGQMMQNQGVLF 368
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+++ R +L AN+HR+G++N +V DG +L + L +DRVLLDAPCSG+G+I++
Sbjct: 369 ANDLREDRCTALIANVHRLGLSNVVVTAMDGRKLKDM--LPKLDRVLLDAPCSGSGIIAR 426
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS---GGYIVYSTCSIMVTENEAVI 324
D +K +++++ + + LQ++L+L+AIDMVDA++K+ GG +VYSTCS+ V E+E VI
Sbjct: 427 DPKIKVKRNVKEFTEHAALQRELLLSAIDMVDADTKTTGEGGVVVYSTCSMAVEEDEMVI 486
Query: 325 DYALKKRDVKLVPCG--LDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
D LK R+V++V ++FG +GF FR +FHPSL+ +RRF+PHVHNMDGFFV KL+K
Sbjct: 487 DAILKARNVRVVAFDDVVNFGSEGFTSFRGKQFHPSLKHSRRFFPHVHNMDGFFVCKLQK 546
Query: 383 MSNS--KKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL 423
SN ++ +P+E V ++ DK T E + V+
Sbjct: 547 FSNEIPQRVRKDRRPTEAV------THAWGEDKWTTEFMDSVM 583
>gi|84994868|ref|XP_952156.1| nucleolar protein [Theileria annulata strain Ankara]
gi|65302317|emb|CAI74424.1| nucleolar protein, putative [Theileria annulata]
Length = 463
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/356 (51%), Positives = 259/356 (72%), Gaps = 7/356 (1%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DL ++ RI+ I +LS +K L+ +R+ Y+ +LK + YYGY+E L ++F P
Sbjct: 113 DLSTVKERIENICGILSKWKSLNSTTRNRESYINELKQLVTVYYGYSEELSDYFFKLFNP 172
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
+E ++ ++ E+P P+ +RTNTLKT+R+DLA LINRG N+DP+ W+K GLVV+ S+VP
Sbjct: 173 LEAIQFFDANEQPLPLTIRTNTLKTKRKDLAVNLINRGANVDPIGDWTKEGLVVHSSKVP 232
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+AG Y+LQSASS +PV++L+P+ E ++DM AAPGGKTT+I LM NTG+++A
Sbjct: 233 IGATPEYLAGHYILQSASSLIPVLSLSPKPNEMILDMCAAPGGKTTHIGQLMNNTGILFA 292
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N+ R KSL +N+HR+G+ N+IVCNY G EL KVL +DR+LLDAPCSG GVIS+D
Sbjct: 293 NDSNKQRCKSLVSNIHRLGILNSIVCNYKGEELLKVLP--KMDRILLDAPCSGLGVISRD 350
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
S+K ++L+D+Q+ S LQKQL+ +I++V N G IVYSTCS+ + ENE V+ Y L
Sbjct: 351 PSIKIKRNLKDLQRNSNLQKQLLSVSINLVKPN----GIIVYSTCSLSIEENEQVLHYCL 406
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK-TRRFYPHVHNMDGFFVAKLKKM 383
KK ++KL+P GL+ G FR +FHPS+ K RRFYPH HN+DGFF+AK+ K+
Sbjct: 407 KKFNIKLLPLGLEIGSPAISNFRGKKFHPSISKFARRFYPHKHNLDGFFIAKIIKL 462
>gi|225679156|gb|EEH17440.1| Yna1p [Paracoccidioides brasiliensis Pb03]
Length = 664
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/358 (55%), Positives = 243/358 (67%), Gaps = 18/358 (5%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +R+LS+ L Q G SR +Y L D+ +YYGY FL L +FP
Sbjct: 224 PDLQLLRSRIMESIRILSDLSTLGQTGKSRADYTNLLLADICTYYGYTPFLAEKLFNLFP 283
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E PRP+ +RTNTL+T RR LA LINRGV L+P+ KWSKVGL V++S V
Sbjct: 284 PREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESSV 343
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DMAAAPG G +
Sbjct: 344 PLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPG-------------GCVL 390
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+ R K L N+HR+G NTIV + D E PK+LG DR+LLDAPCSGTGVIS
Sbjct: 391 ANDASKHRAKGLIGNIHRLGCKNTIVSHLDAREAFPKILG--GFDRILLDAPCSGTGVIS 448
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD SVKTSK+ D ++QKQL+LAAID D SK+GGYIVYSTCS+ V ENE V+ Y
Sbjct: 449 KDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVEENEGVVQY 508
Query: 327 ALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
AL+KR +VK+V GL +FG GF + +F + TRR+YPH N+DGF+V KLKK
Sbjct: 509 ALRKRPNVKIVDTGLGNFGTPGFKSYMGKKFDEKMALTRRYYPHRENVDGFYVCKLKK 566
>gi|403222159|dbj|BAM40291.1| nucleolar protein [Theileria orientalis strain Shintoku]
Length = 515
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/443 (46%), Positives = 283/443 (63%), Gaps = 14/443 (3%)
Query: 4 NIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT---SRKEY 60
N+ E D+ L ++ DL +++ RI+ I +L +K +S+ R+ +
Sbjct: 36 NVDEARDDLELKDSLSEIDKSVDVSDLSSVKERIEIICGILVKWKAVSESSNVTRKRESF 95
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V +LK + YYGY+E L ++F P E ++ E+ E+P P+ +RTNTLKT+R++LA
Sbjct: 96 VSELKQLVTIYYGYSEELSDYFFKLFNPTEAIQFFEANEQPLPVTIRTNTLKTKRKELAV 155
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRG N+DP+ W++ GLVV+ S+VPIGATPEY+ G YMLQSASS +PV+AL P++ E
Sbjct: 156 ALINRGANVDPIGDWTREGLVVHSSKVPIGATPEYLGGHYMLQSASSLIPVLALGPKQNE 215
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+V+DM AAPGGKTT+IA M NTG+++AN+ R KSL +N+HRMG+ NTIV NY GN+
Sbjct: 216 KVLDMCAAPGGKTTHIAQFMNNTGILFANDANKERCKSLVSNIHRMGIFNTIVSNYSGND 275
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
L KVL +DR+LLDAPCSG GVIS+D S+K + ++D+QK S LQKQL+ + +V
Sbjct: 276 LLKVLP--KMDRILLDAPCSGLGVISRDPSIKVKRGMKDLQKNSNLQKQLLATCVQLV-- 331
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKK-RDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
K G IVYSTCS+ + ENE VI+Y L + VKLVP G+D G + F FR FHPS+
Sbjct: 332 --KPKGVIVYSTCSLSIEENEQVINYILSHYKSVKLVPLGIDIGSEAFSTFRGKNFHPSI 389
Query: 360 EK-TRRFYPHVHNMDGFFVAKL-KKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEE 417
K RRFYPH HN+DGFFVAKL K S+ K+S E E E K+E
Sbjct: 390 GKYARRFYPHRHNLDGFFVAKLVKSESDEGKSSKNVAKKEVNETSKKEPLKKTKKVKSES 449
Query: 418 NSEQVLMKKATTKAKDLKKKTSG 440
+ +K+ T K LK K G
Sbjct: 450 KKNKKAVKR--TIKKGLKSKVKG 470
>gi|296089948|emb|CBI39767.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/205 (89%), Positives = 196/205 (95%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI+EESDEFRLPTKEE++EE +QPPDLPNLQRRIKEIVRVLSNF L Q+G RK+Y
Sbjct: 135 MQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDY 194
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QL++DLGSYYGYNEFLIG LVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 195 VEQLRVDLGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 254
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 255 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 314
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGL 205
R++DMAAAPGGKTTYIAALMKN GL
Sbjct: 315 RIVDMAAAPGGKTTYIAALMKNGGL 339
>gi|299753547|ref|XP_001833346.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea
okayama7#130]
gi|298410351|gb|EAU88451.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea
okayama7#130]
Length = 576
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 223/432 (51%), Positives = 278/432 (64%), Gaps = 59/432 (13%)
Query: 12 FRLPTKEEIEEEKQQP-PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGS 70
F LPT EE E+EK PDL LQRR+ S
Sbjct: 187 FHLPTAEEREKEKAAGGPDLHTLQRRMP-------------------------------S 215
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
YYGYN +L L +FP E +E E+ E RP+ +RTNTL+TRRRDLA LINRG +
Sbjct: 216 YYGYNYYLAEKLFLLFPVAEAIEFFEANEVSRPVTIRTNTLRTRRRDLAQALINRGSSKV 275
Query: 131 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPG 190
P P ATPEY+AG YMLQ+ASSFLPV+AL+PQ ERV+DMA+APG
Sbjct: 276 P---------------SPSCATPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAPG 320
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
GKTT++AALM+NTG+I+AN+ +R KSLTAN+HR+G N +VC+YDG E PKV+G
Sbjct: 321 GKTTHMAALMQNTGVIFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVMG--GF 378
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
DR+LLDAPCSGTGVISKD SVK +KS D S+LQKQLIL AID V +SK+GGY VY
Sbjct: 379 DRILLDAPCSGTGVISKDSSVKVNKSDRDFILLSHLQKQLILCAIDSVSPDSKTGGYFVY 438
Query: 311 STCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STCS+ V ENEAV+DYALKKR +V+LV GL FGR+GF ++R FHPS++ TRRFYPHV
Sbjct: 439 STCSVTVEENEAVVDYALKKRPNVRLVDTGLSFGREGFTQYRGKTFHPSVKLTRRFYPHV 498
Query: 370 HNMDGFFVAKLK-----KMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVL- 423
HNMDGF+VAK K K+SN+ K +P +T + + + +EE+ + +
Sbjct: 499 HNMDGFYVAKFKVEKRQKLSNADKEEETSKPGIV---KTGDDHTEDAGFDSEEDEKYIQE 555
Query: 424 MKKATTKAKDLK 435
K+ KAK LK
Sbjct: 556 GKRKAIKAKGLK 567
>gi|123446653|ref|XP_001312075.1| NOL1/NOP2/sun family RNA methylase containing protein [Trichomonas
vaginalis G3]
gi|121893909|gb|EAX99145.1| NOL1/NOP2/sun family putative RNA methylase containing protein
[Trichomonas vaginalis G3]
Length = 476
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/355 (51%), Positives = 249/355 (70%), Gaps = 10/355 (2%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
D +++R + IV L + K L + G +R +Y+ +L DL YGYN +L+ + + P
Sbjct: 73 DYDEVKQRCQLIVATLQDIKKLGEPGITRSDYLNKLFDDLQLLYGYNRYLLEQIASLVPV 132
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E+++ I++ E RP+ +RTNTL+TRR +L VL RGV L P+ KW+K+GL+VYDSQVP
Sbjct: 133 AEIIDFIDANEHQRPVVIRTNTLRTRRNELERVLSERGVRLGPVDKWTKLGLIVYDSQVP 192
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY++G YM+QS SSFLPVMAL PQ R +DM AAPGGKTT++A LMKN G+I A
Sbjct: 193 IGATPEYLSGHYMIQSPSSFLPVMALNPQPGMRTLDMCAAPGGKTTHMAQLMKNQGVIIA 252
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N++ +R ++L AN+HR+GVTNTIV NYDG P V+G D V+ DAPCSGTGVIS+D
Sbjct: 253 NDINRTRAQALIANIHRLGVTNTIVVNYDGRAFPTVMG--GFDAVMCDAPCSGTGVISRD 310
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
SVKTSKS +D++ + QK++IL A D + S GG + Y TCS++V ENEAV+DY +
Sbjct: 311 PSVKTSKSEQDLKVLTQNQKEIILHAYDSI---SSKGGKLCYCTCSLLVEENEAVVDYLI 367
Query: 329 KKRDVKLVPCGL--DFGR---QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
R K++P GL DF + +G V ++ H FHPS++ +RR YPH NMDGF+ A
Sbjct: 368 NNRKCKVIPSGLDSDFDQDLAEGIVNYKGHHFHPSVQLSRRVYPHRLNMDGFYFA 422
>gi|256071291|ref|XP_002571974.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
gi|353229498|emb|CCD75669.1| putative nucleolar protein nol1/nop2 [Schistosoma mansoni]
Length = 434
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/319 (57%), Positives = 244/319 (76%), Gaps = 8/319 (2%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
D L +RI+ + +LS+FK+ + +R V+ L DL S Y YN+FL+ L+++FP
Sbjct: 122 DSSTLNQRIRNWLYILSDFKNRAPADLNRSLCVRTLISDLCSRYSYNQFLMVKLLDLFPK 181
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
E++E++E+ E RP+ +RTNTLKTRRR+LA LINRGVNLDPL WSKVGLVVY SQVP
Sbjct: 182 -EIVEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNLDPLEPWSKVGLVVYSSQVP 240
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
+GATPEY+AG Y+LQ ASS LPVMAL+PQ ER++D+ AAPGGKTTYIA LMKNTG I+A
Sbjct: 241 LGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAPGGKTTYIAQLMKNTGTIFA 300
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE+ SR K+L N HRMGVTNT++C +G + PK+ ++ DRVL+DAPCSGTG+I+KD
Sbjct: 301 NEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKI--MSNFDRVLVDAPCSGTGIIAKD 358
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
SVKT+K+ ++IQKC LQK+L++AAID + K GGY+VYSTCSI+V ENE V+++AL
Sbjct: 359 PSVKTTKNNDEIQKCVELQKRLLVAAID----SCKVGGYVVYSTCSILVEENENVVNFAL 414
Query: 329 KKRDVKLVPCGLDFGRQGF 347
++R V+L L FG +GF
Sbjct: 415 RRRKVRLEETKL-FGEKGF 432
>gi|399217017|emb|CCF73704.1| unnamed protein product [Babesia microti strain RI]
Length = 412
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/360 (52%), Positives = 247/360 (68%), Gaps = 14/360 (3%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQK-GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
DL + ++E +LSN+K K SRK V K + YG++ L ++++F
Sbjct: 24 DLDTAKTHMQEYCTILSNWKQERVKLNRSRKSVVNDFKDCISFVYGFSNELATYILQLFS 83
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P + +E ES K RP+ +RTNTLKT+RRDLA +LI+RG N+DP+ WSK+GLVV D +
Sbjct: 84 PSDALEFFESTAKSRPLTIRTNTLKTKRRDLAQMLISRGANVDPIGDWSKIGLVVNDHTI 143
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
PIGATPEY+AG Y+ QSA+S +PVMAL P E+++DM+AAPGGK T+I LM NTG++Y
Sbjct: 144 PIGATPEYLAGHYIQQSAASLIPVMALDPMPDEKILDMSAAPGGKCTHIGQLMNNTGILY 203
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN++ R SL AN+HRMG+TNTIV NYDG EL KVL +DRVLLDAPCSG G
Sbjct: 204 ANDVNKDRCTSLVANIHRMGLTNTIVINYDGRELVKVLP--KMDRVLLDAPCSGLG---- 257
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
++++DI + S+LQKQL+ A+D+ DA SK+GG IVYSTCS+ ENE VIDY
Sbjct: 258 -----AKRTVKDIVQMSHLQKQLLCTAVDLCDAQSKNGGIIVYSTCSLSAEENEMVIDYI 312
Query: 328 LKKRDVKLVP-CGLDFGRQGFVRFREHRFHPSLEK-TRRFYPHVHNMDGFFVAKLKKMSN 385
LK R V+L P + G GF F + H S+EK TRRFYPH+H++DGFFVAKLKK SN
Sbjct: 313 LKNRSVELCPLLSHEIGVPGFSVFMDKIMHTSIEKYTRRFYPHLHDLDGFFVAKLKKTSN 372
>gi|253741386|gb|EES98257.1| Nucleolar protein NOP2 [Giardia intestinalis ATCC 50581]
Length = 497
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 246/353 (69%), Gaps = 2/353 (0%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
++ ++ RI +V VL++FK SR Y++ LK D+ + YGY++ +I L+ +F P
Sbjct: 144 NIEGIRNRILRVVGVLADFKSRRHPDLSRMFYLELLKKDISAAYGYSDGVIDILMGLFGP 203
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
++ I + EKPRP+ +R N+LK +RR LA +LI RGVNLDPL W K GL ++ SQVP
Sbjct: 204 IDFHSFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDPLGDWCKDGLQIFSSQVP 263
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+ G+YM+Q A+SFLP MAL P+ ER++DM+AAPGGKTT++ ALM+++G+I A
Sbjct: 264 IGATPEYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGGKTTHLGALMQDSGMILA 323
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N+M R+ +L ANL RMGVT ++ D EL + G DRVLLDAPCSG GV+SKD
Sbjct: 324 NDMNRDRIPALQANLARMGVTCAVISCSDARELAQCTG--NFDRVLLDAPCSGLGVVSKD 381
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
S+K +++ EDI + S+LQK+L+ A D++ + + + YSTCS+ ++ENEAVIDY L
Sbjct: 382 ASIKANRTFEDIHRLSHLQKELLNHAFDLLAKHPSNPRLVCYSTCSVTLSENEAVIDYIL 441
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
KR+V++V FG+ G +F +HPS++K RRFYPH+HN GFF+ L+
Sbjct: 442 HKRNVEVVDLPFSFGKPGITKFNGMSYHPSIQKARRFYPHIHNTHGFFICLLR 494
>gi|159118308|ref|XP_001709373.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803]
gi|157437489|gb|EDO81699.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803]
Length = 502
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 246/353 (69%), Gaps = 2/353 (0%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
++ ++ RI +V VL++FK SR Y++ LK D+ YGY++ +I L+ +F P
Sbjct: 149 NIEGIRGRILRVVGVLADFKSRRHPDLSRMFYLELLKKDISVAYGYSDGVIDILLGLFGP 208
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
++ I + EKPRP+ +R N+LK +RR LA +LI RGVNLDPL W K GL ++ SQVP
Sbjct: 209 IDFHAFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDPLGDWCKDGLQIFSSQVP 268
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+ G+YM+Q A+SFLP MAL+P+ ER++DM+AAPGGKTT++ ALM+++G+I A
Sbjct: 269 IGATPEYLRGYYMIQDAASFLPPMALSPKPGERILDMSAAPGGKTTHLGALMQDSGMILA 328
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N+M R+ +L ANL RMGVT ++ D EL + G DRVLLDAPC+G GV+SKD
Sbjct: 329 NDMNRDRIPALQANLARMGVTCAVISCSDARELAQCTG--NFDRVLLDAPCTGLGVVSKD 386
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
S+K +++ EDI K S+LQK+L+ A D++ + S + YSTCS+ ++ENEAVID L
Sbjct: 387 ASIKANRTFEDIHKLSHLQKELLKCAFDLLAKHPSSPRLVCYSTCSVTLSENEAVIDCIL 446
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ R+V++V +FG+ G RF +HPS++K RRFYPH+HN GFF+ L+
Sbjct: 447 RTRNVEVVDLPFNFGKPGITRFNGVSYHPSIQKARRFYPHIHNTHGFFICLLR 499
>gi|308159767|gb|EFO62287.1| Nucleolar protein NOP2 [Giardia lamblia P15]
Length = 502
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 245/353 (69%), Gaps = 2/353 (0%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
++ ++ R+ +V VL++FK SR Y++ L+ D+ + YGY++ +I L+ +F P
Sbjct: 149 NIEGIRGRVLRVVGVLADFKSRRHPDLSRMFYLELLRKDISAAYGYSDGVIDILLGLFGP 208
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
++ I + EKPRP+ +R N+LK +RR LA +LI RGVNLDPL W K GL ++ SQVP
Sbjct: 209 IDFHAFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDPLGDWCKDGLQIFSSQVP 268
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
IGATPEY+ G+YM+Q A+SFLP MAL P+ ER++DM+AAPGGKTT++ ALM+++G+I A
Sbjct: 269 IGATPEYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGGKTTHLGALMQDSGMILA 328
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N+M R+ +L ANL RMGVT ++ D EL + G DRVLLDAPC+G GV+SKD
Sbjct: 329 NDMNRDRIPALQANLARMGVTCAVISCSDARELTQCTG--NFDRVLLDAPCTGLGVVSKD 386
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
S+K +++ +D+ + S+LQK+L+ A D++ + S + YSTCS+ ++ENEAVIDY L
Sbjct: 387 ASIKANRTFDDMHRLSHLQKELLNHAFDLLSKHPSSPRLVCYSTCSVTLSENEAVIDYIL 446
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
KR+V++V FG+ G RF +HP++ K RRFYPH+HN GFF+ L+
Sbjct: 447 HKRNVEVVDLPFSFGKPGITRFNGMSYHPAIRKARRFYPHIHNTHGFFICLLR 499
>gi|47221584|emb|CAF97849.1| unnamed protein product [Tetraodon nigroviridis]
Length = 448
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/319 (57%), Positives = 230/319 (72%), Gaps = 30/319 (9%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPP 88
DL + +RIK+ + VL NF ++G R EY+ LK DL +YY YN FLI L+++FP
Sbjct: 1 DLKTIHQRIKDNIDVLCNFSKKREEGKERAEYMSLLKKDLCTYYSYNHFLIEKLIDIFPL 60
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP 148
EL++ +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 61 SELVDFLEANEIQRPVTIRTNTLKTRRRDLAQA--------------------------- 93
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
ATPEY++G YMLQ ASSFLPVMAL+PQE E V+DM++APGGKTTYIA LM+NTG+I A
Sbjct: 94 -SATPEYLSGQYMLQGASSFLPVMALSPQEGELVLDMSSAPGGKTTYIAQLMRNTGVIVA 152
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
N+ A RLKS+ N+HR+GVTNT+VCNYDG + PKV+G DRVLLDAPCSGTGVI+KD
Sbjct: 153 NDANAERLKSVVGNIHRLGVTNTVVCNYDGRQFPKVMG--GFDRVLLDAPCSGTGVIAKD 210
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
+VKTSK DI + ++LQK+LIL+AID ++A S +GGY+VY TCS+MV ENE V+DYAL
Sbjct: 211 PAVKTSKDDADINRSAHLQKELILSAIDSINAESPTGGYLVYCTCSVMVEENEWVVDYAL 270
Query: 329 KKRDVKLVPCGLDFGRQGF 347
KKR+VKLVP GLDFG++GF
Sbjct: 271 KKRNVKLVPTGLDFGKEGF 289
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 27/30 (90%)
Query: 356 HPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
HPSL+ +RRFYPH HNMDGFFVAKLKK SN
Sbjct: 414 HPSLQLSRRFYPHSHNMDGFFVAKLKKFSN 443
>gi|298712110|emb|CBJ32991.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 605
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 163/295 (55%), Positives = 223/295 (75%), Gaps = 6/295 (2%)
Query: 27 PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
PP + L+ RI+ ++ VLS F++ SR +Y+++L DL YYG+ L+ + MF
Sbjct: 309 PPQV--LKERIESVIEVLSQFQEKRDPALSRADYLERLAKDLKEYYGFLRELVDMFLLMF 366
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
P E +E +E+ +KPRP+ +R NTLKTRR+DLA+ LI RGV+L+P++KWSKVGL + +SQ
Sbjct: 367 SPAECVEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQ 426
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+PIGATPEY+AG YMLQSA+S PVMALAPQ+ ERV+DM+AAPGGK+TYIA LM+NTG++
Sbjct: 427 IPIGATPEYLAGHYMLQSAASMCPVMALAPQQGERVLDMSAAPGGKSTYIAQLMRNTGVV 486
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
AN+++ R ++ ANLHR+GV N +VC +DG ++P VDRVLLDAPCSG GVIS
Sbjct: 487 IANDLRPQRQRATVANLHRLGVRNALVCCHDGRKIP----FKGVDRVLLDAPCSGLGVIS 542
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
+D+SVK ++ +DI + S+LQK+L+ AA+D V A S +GG IVYSTCS+ V ENE
Sbjct: 543 RDQSVKIQRTTKDILRSSHLQKELLCAAVDAVSAKSATGGVIVYSTCSVSVAENE 597
>gi|71404146|ref|XP_804805.1| nucleolar protein [Trypanosoma cruzi strain CL Brener]
gi|70867957|gb|EAN82954.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 328
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 163/270 (60%), Positives = 213/270 (78%), Gaps = 6/270 (2%)
Query: 122 LINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER 181
L+ RG++++PL KWSKVGL V++S VPI T EY+AG YMLQSA SFLPVMALAPQEKER
Sbjct: 2 LLKRGMHVEPLEKWSKVGLQVFESNVPIAGTIEYLAGQYMLQSAVSFLPVMALAPQEKER 61
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
V+DMAAAPGGKTTYIA LMKNTG+++AN++ R K+L ANL R+GVTNT+V NYDG
Sbjct: 62 VLDMAAAPGGKTTYIAQLMKNTGVLFANDVSEPRTKALNANLQRLGVTNTVVTNYDGAGY 121
Query: 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301
K+ + DRVLLDAPC+G+G+IS+D+S+K+SK ED+Q+ S Q+ L+L+AID V
Sbjct: 122 NKI--MKNFDRVLLDAPCTGSGIISRDKSIKSSKHYEDVQRASQQQRTLLLSAIDAV--- 176
Query: 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEK 361
K GGY+VYSTCS +V ENEAV+++A+++R V++V GL FGR G ++R HRF ++
Sbjct: 177 -KVGGYVVYSTCSFLVEENEAVVEFAVRRRHVEIVEMGLPFGRPGLTKYRHHRFQEKMQC 235
Query: 362 TRRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
+RRF+PHVHNMDGFFV KLKK+S+ + A
Sbjct: 236 SRRFFPHVHNMDGFFVCKLKKLSDDCRPEA 265
>gi|331226503|ref|XP_003325921.1| Yna1p [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 601
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 190/362 (52%), Positives = 250/362 (69%), Gaps = 14/362 (3%)
Query: 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTT 194
+KVGL V++S VPIGATPEY+AG YMLQ+ASSFLPV+AL PQ E+ +DM+AAPGGKTT
Sbjct: 223 HNKVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALDPQPGEKCLDMSAAPGGKTT 282
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
+++A+MKNTG ++AN+ +R KSL AN+ RMG N I+ N+D + PKV+G +RVL
Sbjct: 283 FMSAMMKNTGKLFANDSSKARCKSLMANVSRMGCHNVIISNHDARDFPKVMG--GFNRVL 340
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
LDAPCSGTGVISKD SVK +KS +D+ S+LQKQLIL+AID V +S +GGY+VYSTCS
Sbjct: 341 LDAPCSGTGVISKDASVKNNKSEKDLLLLSHLQKQLILSAIDSVSPHSTNGGYLVYSTCS 400
Query: 315 IMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMD 373
+ V ENE+V+DYALKKR +VKLV G+ FG++GFVRFR F+PSL+ TRRFYPHVHN+D
Sbjct: 401 VTVEENESVVDYALKKRPNVKLVETGIGFGKEGFVRFRGKIFNPSLKMTRRFYPHVHNVD 460
Query: 374 GFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKK---TEENSEQVLMKKATTK 430
GFFVAKLK N K +A Q E + + S DKK ++ E V +
Sbjct: 461 GFFVAKLK--VNPKAKTAPIQEEEEDDVEETLSQDDIPDKKQKASKAKDEPVAFDDSEDA 518
Query: 431 AKDLKKKTSGLAENG-NVESPSNEKRRKKRKFPSREEISKVREEKRK-----TLREKVSS 484
K S L G +V P+ EK+R K+ + + ++ ++ ++ TL EKV+S
Sbjct: 519 EIIASAKISQLKAKGIHVTRPNPEKKRSKKHEDDQPDATEKKQAAKQQSDGPTLTEKVNS 578
Query: 485 KK 486
KK
Sbjct: 579 KK 580
>gi|296089949|emb|CBI39768.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 163/202 (80%), Positives = 177/202 (87%), Gaps = 1/202 (0%)
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
MGVTNT+VCNYDG ELPKVLG NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++
Sbjct: 1 MGVTNTVVCNYDGKELPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAH 60
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQ 345
LQKQLILAAIDMVDANSKSGGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR
Sbjct: 61 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRP 120
Query: 346 GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPE 405
GF RFREHRFH SLEKTRRFYPHVHNMDGFFVAKLKKMSNSK +PSE VE+Q PE
Sbjct: 121 GFTRFREHRFHQSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKPNPTPSEPSE-VEEQAPE 179
Query: 406 SNVSNGDKKTEENSEQVLMKKA 427
N S+ + E ++ + +K+
Sbjct: 180 ENDSDSELNMGEKTQHIRVKEG 201
>gi|13435750|gb|AAH04733.1| Nop2 protein [Mus musculus]
Length = 432
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/282 (58%), Positives = 208/282 (73%), Gaps = 14/282 (4%)
Query: 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
MALAPQE ER++DM APGGKT+YIA LM+NTG+I AN+ A RLKS+ NLHR+GVTNT
Sbjct: 1 MALAPQEHERILDMCCAPGGKTSYIAQLMENTGVILANDANADRLKSVVGNLHRLGVTNT 60
Query: 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI 291
I+ +YDG + PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+
Sbjct: 61 IISHYDGRQFPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELL 118
Query: 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFR 351
L+AID V+A SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+
Sbjct: 119 LSAIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQ 178
Query: 352 EHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTP 404
RFHP+L TRRFYPH HNMDGFF+AK KK SNS +A P + +Q TP
Sbjct: 179 ARRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTP 238
Query: 405 ESNVSNGDKKTEENSEQVLMKKATTKAKDLKK---KTSGLAE 443
+S NG + T++ V K+ + KK K +G+A+
Sbjct: 239 KSE--NGSQPTKKARGAVKAKQQLLRQPHSKKPFQKLNGIAK 278
>gi|401825209|ref|XP_003886700.1| tRNA/rRNA cytosine-C5-methylase [Encephalitozoon hellem ATCC 50504]
gi|395459845|gb|AFM97719.1| tRNA/rRNA cytosine-C5-methylase [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/310 (52%), Positives = 216/310 (69%), Gaps = 10/310 (3%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YNE+L+ + E+FP E IE EK RP +R NTL RR+D++ +L RGV+LD LS
Sbjct: 4 YNEYLLEKICELFPRKEAEVFIEESEKQRPTTIRINTLLKRRKDVSKLLRGRGVDLDDLS 63
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W G V++ S VPIGATPEY+AG+Y LQ A+S LPV+ + +E V+D+ AAPGGKT
Sbjct: 64 -WIDSGCVIFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMELKEGLSVVDLCAAPGGKT 122
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+IAALM+NTG+IYAN++ R+ L +N+ RMGV N IV N DG + + + VDRV
Sbjct: 123 THIAALMENTGVIYANDVNEERIAGLKSNIQRMGVRNCIVMNMDGRK----VNVGKVDRV 178
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD SVKTS++ +I + + LQK+LIL DM+ + GG +VYSTC
Sbjct: 179 LLDAPCSGTGVISKDPSVKTSRTKSEIDRMATLQKELILHGFDML----RPGGILVYSTC 234
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S++V ENE V++Y L KR K+ C +D G+ GF+ F+ ++ SL+ RR YPHVHNM
Sbjct: 235 SVLVKENEEVVNYLLTKRPSAKMAQCEVDIGKDGFMSFKGRNYNGSLKMARRIYPHVHNM 294
Query: 373 DGFFVAKLKK 382
DGFF AK+ K
Sbjct: 295 DGFFYAKIVK 304
>gi|387592440|gb|EIJ87464.1| nucleolar protein [Nematocida parisii ERTm3]
gi|387596924|gb|EIJ94544.1| nucleolar protein [Nematocida parisii ERTm1]
Length = 415
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 163/314 (51%), Positives = 215/314 (68%), Gaps = 7/314 (2%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YN++L+ + E+F E + + ++ RP+ +R NTL +R + L+NRGVN+D +
Sbjct: 42 YNDYLLQKITELFNKEEKEAFMIASDQKRPLTIRVNTLFDKRAAIMKKLVNRGVNIDGI- 100
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
+W+ VVY+S VPIGATPEY+AG Y+LQS SS L V+AL PQE E ++DM AAPGGKT
Sbjct: 101 QWNDCSAVVYNSDVPIGATPEYLAGLYILQSPSSSLAVIALDPQENEVIVDMCAAPGGKT 160
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+IAALM NTG IYAN++ R SL ANL RMGV+NTIV G LP V+RV
Sbjct: 161 THIAALMNNTGTIYANDVSEERALSLAANLQRMGVSNTIVTVMGGRGLP----YTNVNRV 216
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGV+SKD + K +K + I++ Y Q LIL A DM++ + +VYSTC
Sbjct: 217 LLDAPCSGTGVLSKDPAAKRNKDAKVIKQLQYKQMALILKAFDMLNPKNPE-SILVYSTC 275
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
SI+V ENE ++DY LKKR + K++ L G++GF +R FHPSL+ TRRFYPH+HN
Sbjct: 276 SILVEENEYIVDYLLKKRKNAKVIETNLPIGKEGFKSYRGWVFHPSLKNTRRFYPHIHNT 335
Query: 373 DGFFVAKLKKMSNS 386
DGFFVAK++K S
Sbjct: 336 DGFFVAKIRKTGYS 349
>gi|449329777|gb|AGE96046.1| nucleolar protein [Encephalitozoon cuniculi]
Length = 370
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/310 (51%), Positives = 214/310 (69%), Gaps = 10/310 (3%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YNE+L+ + E+FP E+ IE EK RP+ +R NTL R+D+ +L RGV+LD LS
Sbjct: 68 YNEYLLEKICEIFPRKEVEAFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVDLDALS 127
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+ G VV+ S VPIGATPEY+AG+Y LQ A+S LPV+ + +E V+D+ AAPGGKT
Sbjct: 128 -WTDSGCVVFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKT 186
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+IAALM+NTG+IYAN++ R+ L +N+ RMGV N IV N DG + + + VDRV
Sbjct: 187 THIAALMENTGVIYANDVNEERIAGLKSNIQRMGVRNCIVMNMDGRK----VNVGRVDRV 242
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD SVKTS++ +I + LQK+LIL M+ K GG ++YSTC
Sbjct: 243 LLDAPCSGTGVISKDPSVKTSRTRSEIDRMVTLQKELILHGFGML----KPGGILMYSTC 298
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S++V ENE V++Y L K K+ C +D G+ GF+ F+ ++ SL+ RR YPHVHNM
Sbjct: 299 SVLVKENEEVVNYLLSKCPSAKIAECEIDIGKDGFMSFKGKNYNGSLKMARRIYPHVHNM 358
Query: 373 DGFFVAKLKK 382
DGFF AK+ K
Sbjct: 359 DGFFYAKILK 368
>gi|85691089|ref|XP_965944.1| nucleolar protein [Encephalitozoon cuniculi GB-M1]
Length = 370
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/310 (51%), Positives = 214/310 (69%), Gaps = 10/310 (3%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YNE+L+ + E+FP E+ IE EK RP+ +R NTL R+D+ +L RGV+LD LS
Sbjct: 68 YNEYLLEKICEIFPRKEVEAFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVDLDALS 127
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+ G VV+ S VPIGATPEY+AG+Y LQ A+S LPV+ + +E V+D+ AAPGGKT
Sbjct: 128 -WTDSGCVVFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKT 186
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+IAALM+NTG+IYAN++ R+ L +N+ RMGV N IV N DG + + + VDRV
Sbjct: 187 THIAALMENTGVIYANDVNEERIAGLKSNIQRMGVRNCIVMNMDGRK----VNVGRVDRV 242
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD SVKTS++ +I + LQK+LIL M+ K GG ++YSTC
Sbjct: 243 LLDAPCSGTGVISKDPSVKTSRTRSEIDRMVTLQKELILHGFGML----KPGGILMYSTC 298
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S++V ENE V++Y L K K+ C +D G+ GF+ F+ ++ SL+ RR YPHVHNM
Sbjct: 299 SVLVKENEEVVNYLLSKCPSAKMAECEIDIGKDGFMSFKGKNYNGSLKMARRIYPHVHNM 358
Query: 373 DGFFVAKLKK 382
DGFF AK+ K
Sbjct: 359 DGFFYAKILK 368
>gi|396080811|gb|AFN82432.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
romaleae SJ-2008]
Length = 306
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/310 (51%), Positives = 215/310 (69%), Gaps = 10/310 (3%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YNE+L+ + E+FP E IE EK RP +R NTL R+D++ +L RGV+LD LS
Sbjct: 4 YNEYLLEKICELFPRKEAEVFIEESEKQRPTTIRINTLLKHRKDVSKLLRGRGVDLDDLS 63
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+ G VV+ S VPIGATPEY+AG+Y LQ A+S LPV+ + +E V+D+ AAPGGKT
Sbjct: 64 -WTDSGCVVFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMELKEGLTVVDLCAAPGGKT 122
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+IAALM+NTG+IYAN++ R+ L +N+ RMGV N IV N DG + + + VDRV
Sbjct: 123 THIAALMENTGIIYANDVNEDRMAGLKSNIQRMGVRNCIVMNMDGRK----VNVGKVDRV 178
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD SVKT+++ +I + + LQK+LIL +M+ + GG ++YSTC
Sbjct: 179 LLDAPCSGTGVISKDPSVKTTRTRSEIDRMATLQKELILHGFEML----RPGGILMYSTC 234
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S++V ENE V++Y L K K+ C +D G+ GF+ F+ ++ SL+ RR YPHVHNM
Sbjct: 235 SVLVKENEEVVNYLLTKCPSAKMAQCEVDIGKDGFMSFKGRNYNGSLKMARRIYPHVHNM 294
Query: 373 DGFFVAKLKK 382
DGFF AK+ K
Sbjct: 295 DGFFYAKIVK 304
>gi|392513053|emb|CAD24979.2| NUCLEOLAR PROTEIN (NOL1/NOP2 family) [Encephalitozoon cuniculi
GB-M1]
Length = 306
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/310 (51%), Positives = 214/310 (69%), Gaps = 10/310 (3%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YNE+L+ + E+FP E+ IE EK RP+ +R NTL R+D+ +L RGV+LD LS
Sbjct: 4 YNEYLLEKICEIFPRKEVEAFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVDLDALS 63
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+ G VV+ S VPIGATPEY+AG+Y LQ A+S LPV+ + +E V+D+ AAPGGKT
Sbjct: 64 -WTDSGCVVFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKT 122
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+IAALM+NTG+IYAN++ R+ L +N+ RMGV N IV N DG + + + VDRV
Sbjct: 123 THIAALMENTGVIYANDVNEERIAGLKSNIQRMGVRNCIVMNMDGRK----VNVGRVDRV 178
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD SVKTS++ +I + LQK+LIL M+ K GG ++YSTC
Sbjct: 179 LLDAPCSGTGVISKDPSVKTSRTRSEIDRMVTLQKELILHGFGML----KPGGILMYSTC 234
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S++V ENE V++Y L K K+ C +D G+ GF+ F+ ++ SL+ RR YPHVHNM
Sbjct: 235 SVLVKENEEVVNYLLSKCPSAKMAECEIDIGKDGFMSFKGKNYNGSLKMARRIYPHVHNM 294
Query: 373 DGFFVAKLKK 382
DGFF AK+ K
Sbjct: 295 DGFFYAKILK 304
>gi|303388173|ref|XP_003072321.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
intestinalis ATCC 50506]
gi|303301460|gb|ADM10961.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
intestinalis ATCC 50506]
Length = 306
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 156/310 (50%), Positives = 215/310 (69%), Gaps = 10/310 (3%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YNE+L+ + E+FP E IE EK RP +R NTL RR+D++ +L RGV++D LS
Sbjct: 4 YNEYLLEKICELFPRKEAEVFIEESEKQRPTTIRINTLLKRRKDVSKLLRGRGVDIDDLS 63
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+ G V++ S VPIGATPEY+AG+Y LQ A+S LPV+ + +E V+D+ AAPGGKT
Sbjct: 64 -WTDSGCVIFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMELKEGLTVVDLCAAPGGKT 122
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+IAALM+NTG IYAN+M R+ L +N+ RMGV N I+ N DG + + + VDRV
Sbjct: 123 THIAALMENTGTIYANDMNEERIAGLKSNVQRMGVKNCIIMNMDGRK----VNVGKVDRV 178
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
L+DAPCSGTGVISKD SVKT+++ +I + LQK+LIL +M+ + GG ++YSTC
Sbjct: 179 LVDAPCSGTGVISKDPSVKTNRTRSEIDRMVTLQKELILHGFEML----RPGGILMYSTC 234
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S++V ENE V++Y L K ++ C +D G+ GF+ F+ ++ SL+ RR YPHVHNM
Sbjct: 235 SVLVKENEEVVNYLLNKCPSARMAQCEIDIGKDGFMSFKGRNYNGSLKMARRIYPHVHNM 294
Query: 373 DGFFVAKLKK 382
DGFF AK++K
Sbjct: 295 DGFFYAKIQK 304
>gi|399949975|gb|AFP65631.1| nucleolar protein [Chroomonas mesostigmatica CCMP1168]
Length = 367
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 228/352 (64%), Gaps = 5/352 (1%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
RRIK I+ ++ N+++L +S+K Y + LK ++ ++Y Y+ L E+ P E++
Sbjct: 19 FNRRIKHIITIIKNYENLDW-NSSKKYYFELLKKEICNFYNYSVNLANRFFEIIPFDEIL 77
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E + +PRP+ +R N +K + + +++ +G+ L +S ++ G +
Sbjct: 78 EFFKYNHRPRPLTIRFNDIKIKNIQIKEIMEKKGIKLFLDKNFSNFAAIINKKGFNFGGS 137
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
PEY+AG+Y LQ SSF P+ AL P++KE+++D+AAAPGGK++YI+ LM N+G++ AN+
Sbjct: 138 PEYLAGYYTLQGFSSFFPIFALNPKKKEKILDLAAAPGGKSSYISQLMNNSGILVANDKN 197
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCSGTGVISKDESV 271
SRLKSL +N+HR+G+ N I+ N+DG+ K+ G D+VL+DAPC+GTG+I D +
Sbjct: 198 KSRLKSLVSNIHRLGIENIIITNFDGSVFQNKMTGF---DKVLIDAPCTGTGIIGHDNRI 254
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K K + S LQK+L+LAAID N IVYSTCSI++ ENE +I YA++KR
Sbjct: 255 KLQKIDSAVLINSTLQKRLLLAAIDSCKDNENQKNCIVYSTCSILIEENEMIIQYAIEKR 314
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+K++P GL FG GF+ ++ FH S+ RRFYPHVHN+DGFF+ K++K+
Sbjct: 315 KIKILPTGLKFGLPGFLNYKRKNFHKSMINCRRFYPHVHNVDGFFICKIEKL 366
>gi|269859444|ref|XP_002649447.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi
H348]
gi|220067210|gb|EED44677.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi
H348]
Length = 311
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 153/312 (49%), Positives = 216/312 (69%), Gaps = 10/312 (3%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YNEFL+ + E+FP E+ +++ EK RPI LR NT+ RR+D+ ++L R V ++ L
Sbjct: 9 YNEFLLTKIKEIFPKKEVEVFLDANEKKRPIILRVNTMLKRRKDILNLLYQRKVEMEKL- 67
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
+W + G++ + S VP+GATPEY+AG+Y++QSA+SFLPV+ L V+D+ AAPGGKT
Sbjct: 68 EWCEEGIIAFSSAVPLGATPEYLAGYYIVQSANSFLPVLNLELNNDLTVVDLCAAPGGKT 127
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
T+IAA+M NTG++YANE+ R +L +N+ RMG TN I+ N D K+ + VDRV
Sbjct: 128 THIAAIMNNTGIVYANEICKERTYALRSNIQRMGFTNCIITNMDA----KLFNIGKVDRV 183
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD S+KTSKSL++I+K QK LIL A DM+ N G ++YSTC
Sbjct: 184 LLDAPCSGTGVISKDMSIKTSKSLDEIKKLQREQKILILHAFDMLKPN----GILMYSTC 239
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S +V ENE ++++ ++ R + K+ ++ G+ GF+ F+ F L K +R YPHVHNM
Sbjct: 240 SFLVEENEEIVEHLIRNRKNAKIQNLDVNIGKDGFMSFKGQDFSNELRKAKRIYPHVHNM 299
Query: 373 DGFFVAKLKKMS 384
DGFF K+KK+S
Sbjct: 300 DGFFYCKIKKIS 311
>gi|380494596|emb|CCF33035.1| tRNA (Cytosine-5-)-methyltransferase NCL1, partial [Colletotrichum
higginsianum]
Length = 469
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/243 (59%), Positives = 182/243 (74%), Gaps = 2/243 (0%)
Query: 28 PDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
PDL L+ RI E +RVL +F +L ++G SR EYV QL D+ +YYGY+E+L L +F
Sbjct: 229 PDLQLLRSRITENIRVLDDFSNLHEEGRSRVEYVNQLIKDICAYYGYSEYLAEKLFNLFS 288
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P E E+ E RP+ +RTNTL+T RRDLA LI+RGV L+P+ KWSKVGL +++S V
Sbjct: 289 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALISRGVTLEPVGKWSKVGLQIFESNV 348
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
P+GATPEY+AG+Y+LQ+ASSFLPVMAL PQE ERV+DMAAAPGGKTT++AA+MKNTG+I
Sbjct: 349 PLGATPEYLAGYYILQAASSFLPVMALEPQENERVLDMAAAPGGKTTHMAAMMKNTGVIV 408
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
AN+ R K L N+HR+G N +V NYD E PK +G DRVLLDAPCSGTGVI+K
Sbjct: 409 ANDPSKQRAKGLIGNIHRLGARNVVVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAK 466
Query: 268 DES 270
D S
Sbjct: 467 DAS 469
>gi|149049414|gb|EDM01868.1| rCG29759, isoform CRA_a [Rattus norvegicus]
gi|149049415|gb|EDM01869.1| rCG29759, isoform CRA_a [Rattus norvegicus]
gi|149049416|gb|EDM01870.1| rCG29759, isoform CRA_a [Rattus norvegicus]
Length = 420
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 146/232 (62%), Positives = 179/232 (77%), Gaps = 2/232 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP + +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 189 LQINV-EEEEAFVLPPAGQTDQDAQTP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRTEY 246
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ QL+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 247 LSQLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 306
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 307 ALINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 366
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI
Sbjct: 367 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTI 418
>gi|160331223|ref|XP_001712319.1| nop2 [Hemiselmis andersenii]
gi|159765766|gb|ABW97994.1| nop2 [Hemiselmis andersenii]
Length = 366
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 223/350 (63%), Gaps = 3/350 (0%)
Query: 33 LQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELM 92
RRI ++ ++ N++ + K TS+K Y+ LK ++ Y Y+ L+ + P E+
Sbjct: 18 FNRRITHLISIIQNYQYIEWK-TSKKYYLDLLKKEICLSYNYSIDLVEKFFNIIPMEEID 76
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E +S E PRP+ +R N+++ + + L N G+ K ++ + +G
Sbjct: 77 EFFKSNETPRPLTIRINSIRNGEENFQNNLRNMGIQKIFEEKLLNFAGIIKRKNIRLGKN 136
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
PE++AG++ LQ SSF V+AL PQ+ ER++++AAAPGGK T+I+ +M+NTG+ AN+
Sbjct: 137 PEFLAGYFTLQGLSSFFSVIALDPQKGERILEIAAAPGGKATFISQIMENTGICIANDKN 196
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
SRL SL + +HR+G+ N+IV N+DG+ + DRVLLDAPC+GTG+IS DE +K
Sbjct: 197 KSRLNSLVSTIHRLGIENSIVTNFDGSFFH--YKMKGFDRVLLDAPCTGTGIISHDERIK 254
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
K I + LQK+L+++AID N + GYIVYSTCSI++ ENE++I YA++KR+
Sbjct: 255 LHKINSAILINTTLQKRLLISAIDSCKINQEKKGYIVYSTCSILIEENESIIQYAVEKRN 314
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
VK+V GL FG GFV+++ F+ + RRFYPH+HN+DGFFV KL+K
Sbjct: 315 VKIVKTGLSFGIPGFVKYKNEIFNKKMHFCRRFYPHIHNVDGFFVCKLEK 364
>gi|396494724|ref|XP_003844374.1| hypothetical protein LEMA_P020250.1 [Leptosphaeria maculans JN3]
gi|312220954|emb|CBY00895.1| hypothetical protein LEMA_P020250.1 [Leptosphaeria maculans JN3]
Length = 377
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/243 (60%), Positives = 173/243 (71%), Gaps = 14/243 (5%)
Query: 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
MALAPQE ERV+DM AAPGGKTT+IAALMKNTG I+AN+ R K L N+HR+GV N
Sbjct: 1 MALAPQENERVLDMTAAPGGKTTHIAALMKNTGCIFANDANKDRAKGLIGNIHRLGVRNA 60
Query: 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI 291
IVCNY E P+V+G DRVLLDAPCSGTGVI+KD SVKT+K+ D K +LQKQLI
Sbjct: 61 IVCNYSALEFPRVMG--GFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLI 118
Query: 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRF 350
LAAID VD +SK+GGYIVYSTCS+ V ENE V+ YAL KR +VKLV GL FG++GF +
Sbjct: 119 LAAIDSVDHHSKTGGYIVYSTCSVTVEENEQVVQYALNKRPNVKLVETGLTFGKEGFTKI 178
Query: 351 REHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETV---EQQTPESN 407
FHPS++ RR+YPH +N+DGFFVAK KK GP P+ V E P N
Sbjct: 179 GGKIFHPSMKMVRRYYPHTYNVDGFFVAKFKK--------TGPTPANAVGVNEATKPNGN 230
Query: 408 VSN 410
+N
Sbjct: 231 SNN 233
>gi|380495954|emb|CCF31994.1| tRNA (Cytosine-5-)-methyltransferase NCL1, partial [Colletotrichum
higginsianum]
Length = 419
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/235 (60%), Positives = 174/235 (74%), Gaps = 11/235 (4%)
Query: 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223
+ASSFLPVMAL PQE ERV+DMAAAPGGKTT++AA+MKNTG+I AN+ R K L N+
Sbjct: 6 AASSFLPVMALEPQENERVLDMAAAPGGKTTHMAAMMKNTGVIVANDPSKQRAKGLIGNI 65
Query: 224 HRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
HR+G N +V NYD E PK +G DRVLLDAPCSGTGVI+KD SVKT+K+ D
Sbjct: 66 HRLGARNVVVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAKDASVKTNKTERDFMLL 123
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDF 342
++QKQLILAAID V+ +SK+GGYIVYSTCS+ V ENEAV+ YAL +R +V+LV L F
Sbjct: 124 PHMQKQLILAAIDSVNHHSKTGGYIVYSTCSVTVEENEAVVQYALSRRPNVRLVETNLPF 183
Query: 343 GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSE 397
GR+GF F +F PSL+ TRR+YPH +N+DGFFVAK +K GP P++
Sbjct: 184 GREGFTSFMGKKFDPSLKLTRRYYPHTYNVDGFFVAKFQKF--------GPTPAK 230
>gi|162605886|ref|XP_001713458.1| nucleolar protein [Guillardia theta]
gi|13794390|gb|AAK39767.1|AF083031_124 nucleolar protein [Guillardia theta]
Length = 358
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 227/348 (65%), Gaps = 6/348 (1%)
Query: 36 RIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELI 95
RIK ++R+ +N + ++K + Y + + +L +GY++F + + +F E+ E +
Sbjct: 11 RIKHLLRI-NNHINKNKKFLFKNYYKKLIIKELLKIFGYSKFFLSMICNIFDLQEIYEFL 69
Query: 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEY 155
S EK RP+ +R N+LK + ++++ +G+ L + ++ + + +S + +G+T EY
Sbjct: 70 TSNEKKRPLSIRINSLKKNSIETVNLIVRKGIKLCRFNHFNDLAFICLNSSISLGSTTEY 129
Query: 156 MAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR 215
+ G+Y LQS SS LPV++L P E+++D+AAAPG K+T I+ M+N G++ +N++K R
Sbjct: 130 LCGYYTLQSISSLLPVISLDPTTNEKILDLAAAPGNKSTLISQFMRNNGILISNDIKKLR 189
Query: 216 LKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV-KTS 274
+KSL ++HR+ V N+I+ NYDG +P + + RVLLDAPCSG+G++S D + K +
Sbjct: 190 IKSLVNSIHRLNVDNSIIANYDGILIPFI--MKGFHRVLLDAPCSGSGLVSHDPLIKKIN 247
Query: 275 KSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334
K + + S LQK+L++AAID + S G IVYSTCSI V ENE VI Y L KR+V+
Sbjct: 248 KHIVILN--SNLQKRLLIAAIDACNGISPMGNIIVYSTCSISVEENECVIQYVLSKRNVE 305
Query: 335 LVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
++ G+DFG G ++ RF S++K +RFYPHVHN+DGFF+ KL+K
Sbjct: 306 IISTGIDFGLPGLTTYKNIRFDESMKKCKRFYPHVHNVDGFFICKLRK 353
>gi|6502552|gb|AAF14354.1|AF113138_1 nucleolar protein Nop2 [Eremothecium gossypii]
Length = 240
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/213 (62%), Positives = 166/213 (77%), Gaps = 3/213 (1%)
Query: 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN 235
P E ER++DMAAAPGGKTTYI+A+MKNTG ++AN+ +R KSL AN+HR+G TNTIVCN
Sbjct: 2 PHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCN 61
Query: 236 YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295
YD E PKV+G DR+LLDAPCSGTGVI KD+SVK +++ +D + +LQKQLIL+AI
Sbjct: 62 YDAREFPKVIG--GFDRILLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQLILSAI 119
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHR 354
D VD+NSK GG IVYSTCS+ V ENEAV+DYAL+KR +VKLV GL G++G +R +
Sbjct: 120 DSVDSNSKHGGVIVYSTCSVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGSTSYRGKK 179
Query: 355 FHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
FHP TRR+YPH +N+DGFFVAK +K SK
Sbjct: 180 FHPHYHLTRRYYPHTYNVDGFFVAKFQKTGPSK 212
>gi|345316919|ref|XP_001511547.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like,
partial [Ornithorhynchus anatinus]
Length = 189
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/187 (68%), Positives = 150/187 (80%)
Query: 57 RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRR 116
R EY+ L+ DL +YY Y +FL+ L+++FP EL+E +E+ E PRPI LRTNTLKTRRR
Sbjct: 3 RAEYLTLLQRDLANYYSYGDFLLSKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRR 62
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
DLA LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAP
Sbjct: 63 DLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAP 122
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
QE ER++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN IV +Y
Sbjct: 123 QENERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIVSHY 182
Query: 237 DGNELPK 243
DG + P+
Sbjct: 183 DGRQFPE 189
>gi|330038980|ref|XP_003239753.1| nucleolar protein [Cryptomonas paramecium]
gi|327206678|gb|AEA38855.1| nucleolar protein [Cryptomonas paramecium]
Length = 348
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 228/350 (65%), Gaps = 3/350 (0%)
Query: 36 RIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELI 95
+I+ IV++++N++ L+ S+ Y +K ++ Y Y +I ++FP E +E +
Sbjct: 2 KIRHIVKIVNNYEKLNL-FQSKNYYKMLIKKEIFLKYKYTLEIIEKFSKLFPFQEFVEFL 60
Query: 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEY 155
+ RP+ +R NTLK +D+ VL+ + + + L + +V +++ I A PEY
Sbjct: 61 LHSQINRPLSIRFNTLKKSPKDIFFVLVKKKIKIFFLKNLYNLVGIVKQTKMKICAIPEY 120
Query: 156 MAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR 215
+AG Y +QS SSF V+ + ++ E+++D+AAAPG KTT I+ +M NTG++ AN++ R
Sbjct: 121 LAGLYTIQSISSFFSVICMNIKKNEKILDLAAAPGSKTTLISQVMNNTGIVVANDINFLR 180
Query: 216 LKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSK 275
+KSL N+HR+GV NT++ NY+G L K + D+VL+DAPC+GTG++S D ++K SK
Sbjct: 181 IKSLIGNIHRLGVKNTVIINYNGILLNKYI--KGFDKVLIDAPCTGTGILSHDNTIKISK 238
Query: 276 SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
I + LQK+L+L+AIDM + S +GG ++YSTCSI+V ENE VI+YAL K+ V++
Sbjct: 239 IKSKIMTITRLQKKLLLSAIDMCNQKSINGGTVLYSTCSILVEENECVIEYALNKKRVEI 298
Query: 336 VPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ L G G+V F ++RF+ ++ K RF+PH+HN DGFF+ KLKK+ N
Sbjct: 299 LATHLGCGMPGYVNFDKNRFNKNMNKCVRFFPHIHNTDGFFICKLKKLEN 348
>gi|221056324|ref|XP_002259300.1| methyltransferase [Plasmodium knowlesi strain H]
gi|193809371|emb|CAQ40073.1| methyltransferase, putative [Plasmodium knowlesi strain H]
Length = 641
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/404 (38%), Positives = 233/404 (57%), Gaps = 27/404 (6%)
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V++L +Y Y+E LI L +F EL +E P+ I LRTNT+K R++L +
Sbjct: 213 VKELLFYYTYFYEYSEELIKYLYYLFDLKELYWFLEMNNLPKEIHLRTNTVKITRKNLMN 272
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+L ++ +N + W+ VG+V+ D +G+ EYM G+YM+QSASS +PV+ L Q +
Sbjct: 273 ILKSQNINAEEGENWNNVGIVINDVNSNVGSLNEYMYGYYMIQSASSLIPVLELNVQPDD 332
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V+DM AAPGGK T+I AL KN G +YAN++ R K++ AN RMG+ N ++ ++D +
Sbjct: 333 TVLDMCAAPGGKCTFICALQKNRGFVYANDINKMRCKAIEANASRMGIHNLVITSFDALK 392
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ + D+++LDAPCSGTGV++K++ + K+L++I++ + Q++L+ AI +V
Sbjct: 393 VGQKWNF-LFDKIILDAPCSGTGVVNKNKGAR-RKTLKEIRELAQKQRKLLNNAISLV-- 448
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
K+GG +VYSTCSI V ENE VI+Y LKKRDV ++P G G +R+ F +
Sbjct: 449 --KNGGIVVYSTCSITVEENEQVINYILKKRDVNILPLDTQIGDPGITHYRKKEFSSKVS 506
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
RR Y H HN D FFVAKL K S++ T G + T +N+ DK +N++
Sbjct: 507 LCRRIYLHKHNYDNFFVAKLWKRSDAVYTKGGVKS-------TKNNNMV--DKNVRKNND 557
Query: 421 QVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSR 464
V T+ K SG+ K +KK KF +R
Sbjct: 558 MVGKNDHNTEQKGDGHPKSGI------------KNKKKGKFRNR 589
>gi|440492091|gb|ELQ74688.1| tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2)
[Trachipleistophora hominis]
Length = 305
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/307 (45%), Positives = 198/307 (64%), Gaps = 11/307 (3%)
Query: 77 FLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS 136
F + + MF E +E EK RPI +R NTLK +++LA L+ RG+ ++ L +S
Sbjct: 8 FFLEKIANMFNEEERAVFLEESEKKRPIVIRVNTLKATKKELAKNLLQRGMTVESLDFYS 67
Query: 137 KVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYI 196
L +YDS+VP+GATPEY+ G+Y +Q ASS L VM L +E V+DM A+PGGK+T+I
Sbjct: 68 NC-LTIYDSKVPVGATPEYLDGWYYIQGASSILAVMNLDVKEHMSVLDMCASPGGKSTFI 126
Query: 197 AALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256
A +MKNTG++Y E R+ SL+ NL RMGV N++V N + +L + VDRVLLD
Sbjct: 127 AEMMKNTGMLYLVENNPERISSLSGNLLRMGVQNSVVINMNVLDLE----IEKVDRVLLD 182
Query: 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316
APCSGTG ISKD KT +D+++ + +QK+LIL D + N G ++YSTCS++
Sbjct: 183 APCSGTGTISKDGHAKTLTE-DDLKRYTEMQKKLILKGFDSLKGN----GIMIYSTCSVL 237
Query: 317 VTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGF 375
ENE V++Y L+KR + K++ C + G++GF FR F ++ RR +PHVHNMDGF
Sbjct: 238 ADENECVVEYLLRKRKNAKILECEGNVGKKGFTAFRGMFFDAKMKYARRIFPHVHNMDGF 297
Query: 376 FVAKLKK 382
F K+ K
Sbjct: 298 FFVKILK 304
>gi|68067801|ref|XP_675834.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495242|emb|CAI04459.1| conserved hypothetical protein [Plasmodium berghei]
Length = 533
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 32 NLQRRIKEIVRVLSNFKDLSQ-KGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVE 90
+++ RIK ++ +LS+ + L+ ++E ++++ YY Y + +I L +F E
Sbjct: 146 DIEDRIKYLLLLLSDPEKLNNPNKIEKREIIKEILYYYSYYYEYTKEMIKYLYYLFDIKE 205
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIG 150
L +E P+ I LRTNTLK R +L +L N+ + + S W+ V + + D+ +G
Sbjct: 206 LYLFLEINNMPKEIHLRTNTLKITRTNLLKILKNKNIAIQDGSNWNNVDITLTDTSSNVG 265
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANE 210
+ EY+ G+Y++QS+SS +PV+ L +E E V+DM AAPGGK T+I + KN G++YAN+
Sbjct: 266 SLNEYLYGYYIIQSSSSLIPVLELNIKENELVLDMCAAPGGKCTFICTIQKNKGIVYAND 325
Query: 211 MKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDES 270
+ R K++ A+ RMG+ N I+ ++D ++ K D++LLDAPCSGTGV++K+++
Sbjct: 326 INKLRCKAIEAHAARMGINNLIITSFDSLKINKYFKF-KFDKILLDAPCSGTGVVNKNKN 384
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
+ K++++I+ S Q++L+ AIDMV K+GG ++YSTCSI V ENE VI+Y LKK
Sbjct: 385 AR-RKTIKEIRDLSQKQRKLLNNAIDMV----KNGGIVIYSTCSITVEENEQVINYILKK 439
Query: 331 RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTS 390
RDV L+P ++ G G + +R+ +F + +R Y H HN D FFVAKL K SN+K
Sbjct: 440 RDVNLLPIDINIGDPGIIHYRKKQFSSKISLCKRIYLHKHNHDNFFVAKLVKRSNAKLGQ 499
Query: 391 AGPQPSETVEQQTPESNV 408
G E+Q E+N+
Sbjct: 500 KGD------EKQNHETNI 511
>gi|429965868|gb|ELA47865.1| hypothetical protein VCUG_00585 [Vavraia culicis 'floridensis']
Length = 305
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/307 (45%), Positives = 197/307 (64%), Gaps = 11/307 (3%)
Query: 77 FLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS 136
F + + MF E + +E EK RP+ +R NTLKT +++LA L RG+ ++ L ++
Sbjct: 8 FFLEKIANMFNEEERIVFLEESEKKRPVVIRVNTLKTTKKELAKNLSQRGMAIENLDFYN 67
Query: 137 KVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYI 196
L +YDS+VPIGATPEY+ G+Y +Q ASS L V+ L +E V+DM A+PGGK+T+I
Sbjct: 68 NC-LTIYDSKVPIGATPEYLDGWYYIQGASSILSVINLDVKEHMSVLDMCASPGGKSTFI 126
Query: 197 AALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256
A +MKNTG++Y E R+ SL NL RMGV N++V N + EL + VDRVLLD
Sbjct: 127 AEMMKNTGMLYLVENNPDRISSLAGNLLRMGVQNSVVINMNVLELE----IEKVDRVLLD 182
Query: 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316
APCSGTG ISKD KT +D+++ + QK+LIL D + N G ++YSTCS++
Sbjct: 183 APCSGTGTISKDGKAKTLAE-DDLRRYAETQKKLILKGFDSLKGN----GIMIYSTCSVL 237
Query: 317 VTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGF 375
ENE V++Y L+KR + K++ C + G++GF FR F ++ RR +PH+HNMDGF
Sbjct: 238 ADENECVVEYLLRKRKNAKILECEGNVGKRGFTAFRGMFFDAKMKYARRIFPHIHNMDGF 297
Query: 376 FVAKLKK 382
F K+ K
Sbjct: 298 FFVKILK 304
>gi|385303599|gb|EIF47663.1| nucleolar protein nop2 [Dekkera bruxellensis AWRI1499]
Length = 282
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/258 (53%), Positives = 182/258 (70%), Gaps = 9/258 (3%)
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAAAPGGKTTYIAA+MKNTG ++AN+ +R K+L AN+HR+G N IVCNYD E PKV
Sbjct: 1 MAAAPGGKTTYIAAMMKNTGCVFANDSNKARTKALVANIHRLGCENVIVCNYDAREFPKV 60
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
+G DRVLLDAPCSGTGVISKD SVKTS++ +D +LQKQL+L+AID V+A+SK
Sbjct: 61 IG--GFDRVLLDAPCSGTGVISKDASVKTSRTPKDFMNIPHLQKQLLLSAIDSVNAHSKE 118
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
GG I YSTCS+ E+E V+DYAL+KR +VKLV GL G++GF +R +F SL TR
Sbjct: 119 GGVITYSTCSVTXDEDECVVDYALRKRPNVKLVDTGLAIGKEGFTSYRGKKFXKSLSLTR 178
Query: 364 RFYPHVHNMDGFFVAKLKKMSNS--KKTSAGPQPSETV--EQQTPESNVSNGDKKTEENS 419
R++PHV+N+DGF+VAK +K++ S K+ AG E + E + N K +E
Sbjct: 179 RYFPHVYNVDGFYVAKFQKIAPSPHDKSKAGAAEKEKAIRADEEEEGIIFNDFAKFDETQ 238
Query: 420 EQVLMKKATTKAKDLKKK 437
++ LMK + +++ LK+K
Sbjct: 239 DKXLMKDSLSRS--LKRK 254
>gi|156098789|ref|XP_001615410.1| proliferating-cell nucleolar antigen p120 [Plasmodium vivax Sal-1]
gi|148804284|gb|EDL45683.1| proliferating-cell nucleolar antigen p120, putative [Plasmodium
vivax]
Length = 615
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 207/326 (63%), Gaps = 6/326 (1%)
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V++L +Y Y+E LI L +F EL +E P+ I LRTNT+K R +L +
Sbjct: 190 VKELLFYYTYFYEYSEQLIKYLYYLFDLKELYMFLEMNNLPKEIHLRTNTVKITRNNLLN 249
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+L ++ +N + + W+ VG+V+ D+ +G+ EY+ G+YMLQSASS +PV+ L ++
Sbjct: 250 ILKSQNINAEEGANWNNVGIVINDANSNVGSLNEYLYGYYMLQSASSLIPVLELNVNPED 309
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
++DM AAPGGK T+I AL KN G +YAN++ R K++ AN R+G+ N I+ ++D +
Sbjct: 310 TILDMCAAPGGKCTFICALQKNRGHVYANDVNKMRCKAIEANASRLGIQNLIITSFDALK 369
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ K D+++LDAPCSGTGV++K++ + K+L++I++ + Q++L+ AI +V
Sbjct: 370 IGKKWTF-QFDKIILDAPCSGTGVVNKNKGAR-RKTLKEIRELAQKQRKLLSNAISLV-- 425
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
K+GG +VYSTCSI V ENE VI+Y LKKRDV ++P + G G +R+ F +
Sbjct: 426 --KNGGIVVYSTCSITVEENEQVINYILKKRDVNVLPTDIQIGDPGITHYRKKEFSSKVA 483
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
RR Y H HN D FFVAKL K S++
Sbjct: 484 LCRRIYLHKHNQDNFFVAKLWKRSDA 509
>gi|82596191|ref|XP_726160.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481450|gb|EAA17725.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 647
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 205/331 (61%), Gaps = 12/331 (3%)
Query: 78 LIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK 137
+I L +F EL +E P+ I LRTNTLK R +L +L N+ + + W+
Sbjct: 228 MIKYLYYLFDIKELYLFLEINNMPKEIHLRTNTLKITRTNLLKILKNKNIAIQDGPTWNN 287
Query: 138 VGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIA 197
V + + D+ +G+ EY+ G+Y++QS+SS +PV+ L +E E V+DM AAPGGK T+I
Sbjct: 288 VDITLTDTSSNVGSLNEYLYGYYIIQSSSSLIPVLELNVKENELVLDMCAAPGGKCTFIC 347
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257
+ KN G++YAN++ R K++ A+ RMG+ N IV ++D ++ K D++LLDA
Sbjct: 348 TIQKNKGIVYANDINKLRCKAIEAHAARMGINNLIVTSFDSLKINKYFKF-KFDKILLDA 406
Query: 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317
PCSGTGV++K+++ + K++++I+ + Q++L+ AID+V K+GG ++YSTCSI V
Sbjct: 407 PCSGTGVVNKNKNAR-RKTIKEIRDLAQKQRKLLNNAIDLV----KNGGIVIYSTCSITV 461
Query: 318 TENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
ENE VI+Y LKKRDV L+P ++ G G +R+ +F + +R Y H HN D FFV
Sbjct: 462 EENEQVINYILKKRDVNLLPIDINIGDPGITHYRKKQFSSKVSLCKRIYLHKHNHDNFFV 521
Query: 378 AKLKKMSNSKKTSAGPQPSETVEQQTPESNV 408
AKL K SN+K G E+Q E N+
Sbjct: 522 AKLVKRSNAKLGQKGD------EKQNHEKNI 546
>gi|308801207|ref|XP_003077917.1| Cytoskeleton-associated protein and related proteins (ISS)
[Ostreococcus tauri]
gi|116056368|emb|CAL52657.1| Cytoskeleton-associated protein and related proteins (ISS), partial
[Ostreococcus tauri]
Length = 768
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 131/230 (56%), Positives = 170/230 (73%), Gaps = 10/230 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++ NI+++ D + LP +++ PDL +Q RI+EIVRVL +FK+ + G SR +Y
Sbjct: 405 LETNIQDD-DTYHLPDEDD----DDSVPDLSAIQMRIQEIVRVLKDFKNRRETGKSRNDY 459
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V++L DL +YYGYN FLI ++ F E MEL+E+ E+ RP+ +RTNTLK RRR+LA+
Sbjct: 460 VERLVADLATYYGYNSFLIRYFLDTFSVEETMELLEANEQQRPVTIRTNTLKVRRRELAE 519
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDP+ KWSKVGL+VYDS+VPIGATPEYMAG Y+LQSASSFLP MALAPQE E
Sbjct: 520 SLINRGVNLDPVGKWSKVGLIVYDSRVPIGATPEYMAGQYILQSASSFLPCMALAPQEGE 579
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEM-----KASRLKSLTANLHR 225
RV+DMAAAPGGKTTY+AALM+NTG+ + + SR + LH+
Sbjct: 580 RVLDMAAAPGGKTTYLAALMRNTGMDFCKRVPEETFDVSRCQLAAPGLHK 629
>gi|70945403|ref|XP_742525.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521557|emb|CAH82175.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 511
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 199/309 (64%), Gaps = 6/309 (1%)
Query: 78 LIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK 137
+I L +F EL +E P+ I LRTNTLK R +L +L N+ + + S W+
Sbjct: 209 MIKYLYYIFDIKELYLFLEINNMPKEIHLRTNTLKITRTNLLKILKNKNIAIQDGSTWNN 268
Query: 138 VGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIA 197
V + + D+ +G+ EY+ G+Y++QS+SS +PV+ L +E E V+DM AAPGGK TYI
Sbjct: 269 VDITLTDTSSNVGSLNEYLYGYYIIQSSSSLIPVLELNIKENELVLDMCAAPGGKCTYIC 328
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257
+ KN G++YAN++ R K++ A+ RMG+ N I+ ++D ++ K D++LLDA
Sbjct: 329 TIKKNKGIVYANDINKMRCKAIEAHAARMGINNLIITSFDSLKINKYFKF-KFDKILLDA 387
Query: 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317
PCSGTGV++K+++ + K++++I+ + Q++L+ AID+V K+GG ++YSTCSI V
Sbjct: 388 PCSGTGVVNKNKTAR-RKTIKEIRDLAQKQRKLLNNAIDIV----KNGGIVIYSTCSITV 442
Query: 318 TENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
ENE VI+Y LKKRDV L+P ++ G G + +R+ +F + +R Y H HN D FFV
Sbjct: 443 EENEQVINYILKKRDVNLLPTDINIGDPGIIHYRKKQFSSKIALCKRIYLHKHNHDNFFV 502
Query: 378 AKLKKMSNS 386
AKL K S++
Sbjct: 503 AKLVKRSDA 511
>gi|389583837|dbj|GAB66571.1| proliferating-cell nucleolar antigen p120, partial [Plasmodium
cynomolgi strain B]
Length = 329
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
E LI L +F EL +E P+ I LRTNT+K R++L +L ++ ++ + W
Sbjct: 26 EQLIKYLYYLFDLKELYLFLEMNNLPKEIHLRTNTIKITRKNLLHILKSQNISAEEGENW 85
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTY 195
+ VG+V+ D+ +G+ EYM G+YM+QSASS +PV+ L Q E ++DM AAPGGK T+
Sbjct: 86 NNVGIVINDANSNVGSLNEYMYGYYMIQSASSLIPVLELNVQPNEIILDMCAAPGGKCTF 145
Query: 196 IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255
I AL KN G +YAN++ R K++ AN RMG+ N IV ++D ++ + D+++L
Sbjct: 146 ICALQKNKGFVYANDVNKMRCKAIEANASRMGIHNLIVTSFDALKIGEKWNF-QFDKIIL 204
Query: 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315
DAPCSGTGV++K++ + K++++I+ + Q++L+ AI +V K+GG +VYSTCSI
Sbjct: 205 DAPCSGTGVVNKNKGAR-RKTIKEIRDLAQKQRKLLNNAISLV----KNGGIVVYSTCSI 259
Query: 316 MVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGF 375
V ENE VI+Y LKKRDV ++P + G G +R+ F + RR Y H HN D F
Sbjct: 260 TVEENEQVINYILKKRDVNVLPTNIQIGDPGITHYRKKEFSSKVSLCRRIYLHKHNYDNF 319
Query: 376 FVAKLKKMSN 385
FVAKL K S+
Sbjct: 320 FVAKLWKRSD 329
>gi|124804351|ref|XP_001347976.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
gi|23496230|gb|AAN35889.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
Length = 634
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 222/392 (56%), Gaps = 9/392 (2%)
Query: 78 LIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK 137
+I L +F EL +E P+ I LRTNTLK R +L +L N+ V++ W+
Sbjct: 204 MIKYLYYIFDIKELYLFLEINNMPKEIHLRTNTLKITRNNLMKILKNQNVSVQEGESWNH 263
Query: 138 VGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIA 197
VG+ + D +G+ EY+ G+Y++QS+SS +PV+ L QE + V+DM AAPGGK T++
Sbjct: 264 VGITIKDVNTNVGSLNEYLYGYYIIQSSSSLMPVLELNIQEDDMVLDMCAAPGGKCTFMC 323
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257
L KN G++YAN++ R K++ A+ RMG+ N IV D ++ K L D++LLDA
Sbjct: 324 TLKKNRGVVYANDINKLRCKAIEAHASRMGINNLIVTCIDALKIQKHLTF-QFDKILLDA 382
Query: 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317
PCSGTGV++K+++ + K++++I+ + QK L+ AI+++ K+GG +VYSTCSI V
Sbjct: 383 PCSGTGVVNKNKTAR-RKTIKEIRDLAQKQKILLNNAINLL----KNGGIVVYSTCSISV 437
Query: 318 TENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
ENE VI+Y LKKRDV L+P ++ G G ++R+ +F + +R Y H HN D FF+
Sbjct: 438 EENEQVINYILKKRDVNLLPTNINIGDPGITQYRKKQFSSKISLCKRIYLHKHNHDNFFI 497
Query: 378 AKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTK---AKDL 434
AKL K S++ T+ +E + + + S+ L + +
Sbjct: 498 AKLIKRSDAVFTNKDKNSNEKKKNKDKGKKKKKKNDNRNNISQTNLTNHQHVEYNKNEIK 557
Query: 435 KKKTSGLAENGNVESPSNEKRRKKRKFPSREE 466
K + N+ NEK+++ P + E
Sbjct: 558 KNNKLTNKKKENINKHKNEKQQQTLNVPKKNE 589
>gi|147921688|ref|YP_684492.1| tRNA/rRNA cytosine-C5-methylase [Methanocella arvoryzae MRE50]
gi|110619888|emb|CAJ35166.1| putative tRNA/rRNA cytosine-C5-methylase (Nop2/Sun family)
[Methanocella arvoryzae MRE50]
Length = 316
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/315 (42%), Positives = 187/315 (59%), Gaps = 12/315 (3%)
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
+L Y YNE+++ + P +L + +ES E P +R NTLK L L ++G
Sbjct: 12 ELAKKYKYNEYMVARFARLVP--DLEKFLESMEAPPATYIRVNTLKIAPNALLKRLTDKG 69
Query: 127 VNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186
L P V IGA+ E++ G++ +Q SS +P +ALAP + VIDMA
Sbjct: 70 FTLKPADIPD--CFEVTGEPYSIGASAEHLLGYFYVQDKSSMIPPLALAPNPGDTVIDMA 127
Query: 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246
A+PGGKTT+IA LM N GLI A E + R+ SL N+ R GV NT + N D E K+ G
Sbjct: 128 ASPGGKTTHIAQLMNNEGLIVAIEKEPGRIPSLRTNIGRCGVMNTAIYNMDALEADKI-G 186
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
+ D++LLDAPC+G GVI++D S KTS+ DIQ CS +Q +LI AA+ ++ K GG
Sbjct: 187 VKA-DKILLDAPCTGEGVIARDRSRKTSREEADIQFCSTVQHELIDAALKVL----KPGG 241
Query: 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFY 366
+VYSTCS ENE +IDYA+KK +K+ P + +G G +F F P ++ RR Y
Sbjct: 242 TLVYSTCSYAPEENELIIDYAVKKYGLKVDP--VPYGVPGIEKFGSLTFAPEVKNARRMY 299
Query: 367 PHVHNMDGFFVAKLK 381
PH+HN GFFVA+L+
Sbjct: 300 PHIHNTTGFFVARLR 314
>gi|343423773|emb|CCD18057.1| NOL1/NOP2/sun family protein, putative, (fragment) [Trypanosoma
vivax Y486]
Length = 251
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 155/232 (66%), Gaps = 15/232 (6%)
Query: 200 MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259
MKNTG+I+AN++ R KSL ANL R+GVTNTIV NYDG +V+ DRVLLDAPC
Sbjct: 1 MKNTGVIFANDVSEPRTKSLNANLQRLGVTNTIVTNYDGVGYERVM--KNFDRVLLDAPC 58
Query: 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
+G+G+IS+D+S+KTSK ED+Q+ S LQ+ L+L+A+D + + GG+IVYSTCS +V E
Sbjct: 59 TGSGIISRDKSIKTSKHTEDVQRASQLQRDLLLSAVDAL----RVGGHIVYSTCSFLVEE 114
Query: 320 NEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
NEAV+D+ L+ R V +V GL FGR G ++R HRFH L RR +PHVHNMDGFFV K
Sbjct: 115 NEAVVDFVLRHRAVTVVDTGLPFGRPGLAKYRHHRFHDKLHYARRLFPHVHNMDGFFVCK 174
Query: 380 LKKMSNSKK---------TSAGPQPSETVEQQTPESNVSNGDKKTEENSEQV 422
L+K+SN + T+ P+ T T + + K+ ENS +V
Sbjct: 175 LRKLSNEHEQCETEAQAVTTKKPEKKSTATTATRTKAIKSTTKRVRENSSKV 226
>gi|383320013|ref|YP_005380854.1| ribosomal RNA methyltransferase NOP2 [Methanocella conradii HZ254]
gi|379321383|gb|AFD00336.1| ribosomal RNA methyltransferase NOP2 [Methanocella conradii HZ254]
Length = 320
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 192/330 (58%), Gaps = 21/330 (6%)
Query: 61 VQQLKLD-----LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRR 115
+QQ D L YGY E+++ P +E + S E+P +R NTL+
Sbjct: 5 IQQFDADERVKALARKYGYPEYMVARFARFVPDLE--RFLASMEEPPRTYIRVNTLRINP 62
Query: 116 RDLADVLINRGVNLDPLSKWSKV--GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMA 173
L L ++G L + + V L V IGA+ E+++G++ +Q SS +P +A
Sbjct: 63 NALIKRLSDKGFTL----RETDVPDCLEVTGEPYSIGASAEFLSGYFYVQDKSSMVPPLA 118
Query: 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233
LAPQ + VIDMAA+PGGKTT++A +M N GL+ A E+ SRL L +NL R G+ NT++
Sbjct: 119 LAPQPGDVVIDMAASPGGKTTHLAQMMGNRGLLIAIEVDESRLAGLRSNLGRCGIMNTVL 178
Query: 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA 293
+ D ++ ++ D++LLDAPC+G GVI+KD S KTS+ +EDI+ CS LQ++L
Sbjct: 179 FHMDARDVARL--EIKADKILLDAPCTGEGVIAKDRSRKTSRGIEDIKYCSGLQEEL--- 233
Query: 294 AIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREH 353
ID A K GG +VYSTCS ENE +DYA+KK +K+ P + +G G F
Sbjct: 234 -IDAAHACLKPGGILVYSTCSFAPEENECNVDYAIKKYGMKVEP--IPYGEPGLTSFGGL 290
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
F P ++ RR YPH+H GFFVA+LK +
Sbjct: 291 AFEPQVKNARRLYPHIHGTSGFFVARLKNV 320
>gi|11499621|ref|NP_070863.1| proliferating-cell nucleolar antigen P120 [Archaeoglobus fulgidus
DSM 4304]
gi|2648496|gb|AAB89215.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
fulgidus DSM 4304]
Length = 324
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 195/323 (60%), Gaps = 18/323 (5%)
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
+L YGY+EF++ + F E ++I +FE+ P +R NTLK + L + L +RG
Sbjct: 14 ELAVKYGYDEFIVRRWLHFFGD-ETEDIIRAFEEGIPKYIRINTLKIDEKGLLERLESRG 72
Query: 127 VNLDPLSKWSKVGLV--VYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L K ++V V + IGATPEY+ G+Y + SS +P +AL P+ E V+D
Sbjct: 73 FKL----KKTEVPYCFEVVEEPYSIGATPEYLMGYYYVMDKSSCIPPLALEPKPGEVVVD 128
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
+AA+PGGKTT+++ LM+N G + A E + RL+ L N++RMG N V N DG +P
Sbjct: 129 LAASPGGKTTFLSMLMENKGAVIAVEPQKERLQPLIDNINRMGAMNVAVINVDGRRVP-A 187
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
+G+ DRVLLDAPC+G G+I KD S KT + EDI CS LQ++L+LAA D + K
Sbjct: 188 MGIKA-DRVLLDAPCTGEGIIHKDPSRKTDRGKEDILFCSSLQRELVLAAFDCL----KE 242
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
GG +VYSTCS+ ENE V+D+ L++R K V +++G + + K RR
Sbjct: 243 GGVMVYSTCSLTPEENEFVVDFLLERR--KGVVEEIEWGDEALAL---PGVKNEVSKARR 297
Query: 365 FYPHVHNMDGFFVAKLKKMSNSK 387
FYPH H GFFVA+++K+ +SK
Sbjct: 298 FYPHRHQCSGFFVARIRKVGDSK 320
>gi|327400250|ref|YP_004341089.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6]
gi|327315758|gb|AEA46374.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6]
Length = 319
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 190/331 (57%), Gaps = 33/331 (9%)
Query: 63 QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVL 122
L +L YGY+EF+I +F E +ELIE+ EK P +R NTLK ++L
Sbjct: 10 HLSRELAECYGYDEFIIRRWFGIFGD-EAVELIEAMEKGVPKYIRVNTLKIEEKEL---- 64
Query: 123 INRGVNLDPLSKWSKVGLVVYDSQVP-----------IGATPEYMAGFYMLQSASSFLPV 171
+ + K VV ++VP IGATPEY+ G+Y + +S +P
Sbjct: 65 ---------IRRLEKRKFVVEQTEVPFCYKVVGEPYSIGATPEYLMGYYYVMDKASCIPP 115
Query: 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
+AL+P ++ V+D AA+PGGKTT++A LM N G++ A E R++ L N+HRMGV N
Sbjct: 116 LALSPSSRDVVVDFAASPGGKTTFLAQLMGNRGVLLAIEANPDRIQPLIDNIHRMGVLNA 175
Query: 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI 291
V + + K+ G+ D++LLDAPCSG G+I KD S KTS+ EDI CS LQ+ LI
Sbjct: 176 AVVQMNAAKFHKI-GIKP-DKILLDAPCSGEGIIHKDPSRKTSRGEEDILFCSGLQRDLI 233
Query: 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFR 351
+AI + KSGG +VYSTCS+ ENE VI +AL V+L +++G +
Sbjct: 234 DSAIRSL----KSGGALVYSTCSLTPEENEMVIQWALDNHPVRLEK--IEWGDPALTKVG 287
Query: 352 EHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ RF ++K RRFYPH H GFFVAKL K
Sbjct: 288 DIRFSNEMKKARRFYPHRHECSGFFVAKLVK 318
>gi|429963036|gb|ELA42580.1| hypothetical protein VICG_00332, partial [Vittaforma corneae ATCC
50505]
Length = 196
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 147/202 (72%), Gaps = 9/202 (4%)
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
V+D+ AAPGGK+T+IAA++ NTG++Y+N++ R+ SL +NL RM VTN I+ N D
Sbjct: 1 VVDLCAAPGGKSTHIAAILNNTGVLYSNDISKERISSLKSNLSRMAVTNAIITNVD---- 56
Query: 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301
+ + VDR+LLDAPCSGTGVISKD S+KTSKS+EDI++ +Q++LIL A DM+
Sbjct: 57 ALLFNVGKVDRILLDAPCSGTGVISKDPSIKTSKSVEDIKRVVKIQQKLILHAFDML--- 113
Query: 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+SGG +VYSTCS++V ENE V+DY L +R K+V + GR+GF+ FR F+ SL+
Sbjct: 114 -RSGGCMVYSTCSVLVEENEGVVDYLLSQRKSAKVVDLNVAVGREGFIHFRNENFNGSLQ 172
Query: 361 KTRRFYPHVHNMDGFFVAKLKK 382
K RR YPHVHNMDGFF K+ K
Sbjct: 173 KARRIYPHVHNMDGFFYVKIFK 194
>gi|242398230|ref|YP_002993654.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
sibiricus MM 739]
gi|242264623|gb|ACS89305.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
sibiricus MM 739]
Length = 310
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 173/295 (58%), Gaps = 17/295 (5%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ E+P P C R NTL+T + ++ +G +S W++ G + I +
Sbjct: 27 VRIAEAMERPLPRCFRVNTLRTEISTITKIMNKKGFQFKRIS-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY+ G +Q ASS P +AL P+ E + DMAAAPGGKT+Y+A LMKN G+IYA ++
Sbjct: 86 TPEYLGGLIYIQEASSMYPPVALEPKPGEIIADMAAAPGGKTSYMAQLMKNKGVIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCN----YDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
RLK NL R+GVTNTI+ + Y G LG+ D++LLDAPC+G+G I K
Sbjct: 146 GRDRLKETRLNLSRLGVTNTILIHKSSLYMGE-----LGIE-FDKILLDAPCTGSGTIHK 199
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
+ K +++ED++ C LQ Q+I A++ N K GG +VYSTCS+ ENE VI +A
Sbjct: 200 NPERKADRTIEDVKFCQNLQMQMIKVALE----NLKVGGVLVYSTCSLEPEENEFVIQWA 255
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
L D+ L+P L FG + L K RRFYP HN GFFVAK++K
Sbjct: 256 LDNFDIALLP--LRFGEPALTSPFDIELSSELAKARRFYPDEHNTSGFFVAKIQK 308
>gi|212223580|ref|YP_002306816.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212008537|gb|ACJ15919.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 371
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 177/292 (60%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTL+ L +L +G + W++ G + I +
Sbjct: 89 LAIAEAMEKPLPRCFRVNTLRVEIPTLTKLLNKKGFQFRRVP-WAREGFCLTREPFSITS 147
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LMKN G+IYA ++
Sbjct: 148 TPEYLSGLLYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMKNEGIIYAFDV 207
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK NL R+G+TNTI+ + + + LG+ D++LLDAPC+G+G I K+
Sbjct: 208 GEERLKETRLNLSRLGITNTILIHKSSLHMGE-LGIE-FDKILLDAPCTGSGTIHKNPER 265
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K+++++EDI+ C LQ Q+I A++ N K GG +VYSTCS+ ENE VI + L
Sbjct: 266 KSNRTMEDIKFCQGLQMQMIKVALE----NLKPGGILVYSTCSLEPEENEFVIQWTLDSF 321
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G ++ + ++K RRFYP H GFFVAKL+K+
Sbjct: 322 DVELLP--LRYGEPALIKPFGVKLSGEIKKARRFYPDRHGTSGFFVAKLRKL 371
>gi|375084080|ref|ZP_09731090.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
litoralis DSM 5473]
gi|374741246|gb|EHR77674.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
litoralis DSM 5473]
Length = 310
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 172/295 (58%), Gaps = 17/295 (5%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+++ E+ EKP P C R NTL+ L +L +G + W+K G + I +
Sbjct: 27 LKIAEAMEKPLPRCFRVNTLRIEIPRLTKMLNKKGFQFKRVP-WAKEGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY+ G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LMKN G+IYA ++
Sbjct: 86 TPEYLGGLLYIQEASSMYPPIALDPKPGEVVADMAAAPGGKTSYLAQLMKNEGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCN----YDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
RLK NL R+GVTNTI+ + Y G LG+ D++LLDAPC+G+G I K
Sbjct: 146 GEERLKETRLNLSRLGVTNTILFHKSSLYMGE-----LGIK-FDKILLDAPCTGSGTIHK 199
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
+ K +++LED++ C LQ Q++ A++ N K GG +VYSTCS+ ENE VI +A
Sbjct: 200 NPERKANRTLEDVKFCQNLQMQMVRVALE----NLKEGGILVYSTCSLEPEENEFVIQWA 255
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
L D++L+P L G L K RRFYP HN GFFVAK++K
Sbjct: 256 LDNFDIELLP--LRHGEPALTAPFGIELSEELSKARRFYPDRHNTSGFFVAKIRK 308
>gi|315229812|ref|YP_004070248.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
gi|315182840|gb|ADT83025.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
Length = 310
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/296 (41%), Positives = 177/296 (59%), Gaps = 17/296 (5%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTL+T L +L +G + W+K G + I +
Sbjct: 27 IRIAEAMEKPLPRCFRVNTLRTEIPKLTKLLNKKGFQFKRVP-WAKEGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LMKN G+IYA ++
Sbjct: 86 TPEYLSGLLYIQEASSMYPPIALEPKPGEVVADMAAAPGGKTSYMAQLMKNGGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCN----YDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
RLK + NL R+GVTN +V + Y G LG+ D++LLDAPC+G+G I K
Sbjct: 146 GEERLKEMRLNLSRLGVTNVVVFHKSSLYMGE-----LGIE-FDKILLDAPCTGSGTIHK 199
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
+ K++++L+DI+ C LQ ++I A++ N K GG +VYSTCS+ ENE V+ +
Sbjct: 200 NPERKSNRTLDDIKFCQNLQMKMIKVALE----NLKKGGVLVYSTCSLEPEENEFVVQWV 255
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
L +V+L+P L +G V+ L+K RRFYP H GFFVAK++K+
Sbjct: 256 LDNFEVELLP--LRYGEPALVKPFGIELSEELKKARRFYPDKHGTSGFFVAKIRKI 309
>gi|341581694|ref|YP_004762186.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
gi|340809352|gb|AEK72509.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
Length = 309
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 175/292 (59%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ E+P P C R NTL+ L +L +G + W++ G + I +
Sbjct: 27 LAIAEAMERPLPRCFRVNTLRIEVPKLTKLLNKKGFQFKRVP-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALEPKPGETVADMAAAPGGKTSYLAQLMENEGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK NL R+GVTNT++ + + + LG+ DR+LLDAPC+G+G I K+
Sbjct: 146 GEERLKETRLNLSRLGVTNTVLIHSSSLHIEE-LGVE-FDRILLDAPCTGSGTIHKNPER 203
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K ++++ED++ C LQ QLI A++++ K GG +VYSTCS+ ENE V+ + L+
Sbjct: 204 KANRTMEDVKFCQNLQMQLIEKALEVL----KPGGVLVYSTCSLEPEENEFVVQWVLENF 259
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G + KTRRFYP H GFFVAK+KK+
Sbjct: 260 DVELLP--LRYGEPALTSPFGIELSEEIRKTRRFYPDRHGTSGFFVAKIKKL 309
>gi|284161602|ref|YP_003400225.1| RNA methylase [Archaeoglobus profundus DSM 5631]
gi|284011599|gb|ADB57552.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
5631]
Length = 321
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 186/321 (57%), Gaps = 15/321 (4%)
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
+L YGYNEF++ + F E ++LIE+ E+ P +R NT+K DL + L RG
Sbjct: 13 ELAKRYGYNEFIVRRWINFFGFEETVKLIEAMERGIPKHIRVNTIKIDENDLIERLRERG 72
Query: 127 VNLDPLSKWSKVGLV--VYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L+ ++V V + IGATPEY+ G+Y + SS +P + L P+ E V D
Sbjct: 73 FKLEK----TEVPFCYKVVEEPYSIGATPEYLMGYYYVMEKSSCIPPLVLNPKSNELVAD 128
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
A+APGGKTT++A LM N G++ A E R+++L N+HRMGV NT V + +
Sbjct: 129 FASAPGGKTTFLAQLMNNRGVLIAIEANKERIQALIDNIHRMGVLNTAVIHMNAVRFCN- 187
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
LGL VD++LLDAPCSG GVI KD+ K +DI+ CS LQK+L+ +A+ + K
Sbjct: 188 LGLK-VDKILLDAPCSGEGVIHKDKDRKRVSGRKDIEFCSKLQKELVESALKSL----KP 242
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREH-RFHPSLEKTR 363
GG +VYSTC++ ENE VI Y L + +V++ +++G + + K R
Sbjct: 243 GGVLVYSTCTLAPEENELVIQYVLDRFEVEIGE--IEWGEPALTEIPNFGKLDKDIAKCR 300
Query: 364 RFYPHVHNMDGFFVAKLKKMS 384
RFYPH H GFFVAK+ K+S
Sbjct: 301 RFYPHKHESSGFFVAKIVKVS 321
>gi|288932371|ref|YP_003436431.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
gi|288894619|gb|ADC66156.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
Length = 328
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 185/317 (58%), Gaps = 15/317 (4%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L YGY+EF+I V +F E +L+E EK P +R NT+K +L + L RG
Sbjct: 15 LAKKYGYDEFIIRRWVNIFGEEEAAKLVEGMEK-VPKYIRVNTIKISEDELVERLEERGF 73
Query: 128 NLDPLSKWSKVGLV--VYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185
L+ ++V V + IGATPE++ G+Y + SS +P + L P+E + V+DM
Sbjct: 74 VLNK----TEVPFCYEVVEEPYSIGATPEFLMGYYYVMDKSSCIPPIELNPKESDLVVDM 129
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
AA+PGGK T I+ LMKN G++ A E R+ L N+HRMGV N IV + + L
Sbjct: 130 AASPGGKATMISMLMKNKGVLIAIEGNEERIPPLIDNIHRMGVMNAIVLRMNSAKFHN-L 188
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
G+ D++LLDAPC+G G+I KD + K S+ ++DI C+ LQKQ++ A I + K G
Sbjct: 189 GIKA-DKILLDAPCTGEGIIHKDPTRKWSRGVKDILFCTSLQKQMLEAGIKSL----KPG 243
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
G ++YSTCS+ ENE VID+ALK +++L + FG + + + + L K +R
Sbjct: 244 GVLIYSTCSLTPEENEFVIDWALKNFEIRLEE--VKFGEEALTKIGDVKLSSELRKAKRL 301
Query: 366 YPHVHNMDGFFVAKLKK 382
YPH H GFFVAK+ K
Sbjct: 302 YPHKHRCSGFFVAKIVK 318
>gi|282163719|ref|YP_003356104.1| NOL1/NOP2/sun family putative RNA methylase [Methanocella
paludicola SANAE]
gi|282156033|dbj|BAI61121.1| NOL1/NOP2/sun family putative RNA methylase [Methanocella
paludicola SANAE]
Length = 320
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 190/319 (59%), Gaps = 16/319 (5%)
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
+L Y Y E+++ A E F P +L + + S E P +R NTL+ L L ++G
Sbjct: 16 ELAKKYRYPEYMV-ARFERFVP-DLEKFLASMEAPPRTYIRVNTLRINANALTKRLTDKG 73
Query: 127 VNLDPLSKWSKV--GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L + + + L V IGA+ EY+ G++ +Q SS +P +ALAPQ + VID
Sbjct: 74 FTL----RETDIPDCLEVTAEPYSIGASAEYLLGYFYVQDKSSVIPPLALAPQPGDVVID 129
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAA+PGGKTT +A +M N GL+ A E++ +R+ L +NL R GV NT + + D ++ K+
Sbjct: 130 MAASPGGKTTQLAQMMDNKGLLIAIEVEIARIAGLRSNLGRCGVMNTALFHMDARDIKKL 189
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
D++LLDAPC+G GVI+KD + KTS+ DIQ CS LQ++LI AA A K
Sbjct: 190 --EVKADKILLDAPCTGEGVIAKDRTRKTSRGESDIQFCSGLQEELIDAAY----ACMKP 243
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
GG +VYSTCS ENE ++D+ +KK +K+ P + +G G F + +F P ++ RR
Sbjct: 244 GGVLVYSTCSFAPEENERIVDHLIKKYGMKVEP--VPYGEPGIESFGDMKFDPQVKNARR 301
Query: 365 FYPHVHNMDGFFVAKLKKM 383
YPH+H GFFVA+LK +
Sbjct: 302 LYPHLHGTSGFFVARLKNV 320
>gi|402470997|gb|EJW04946.1| hypothetical protein EDEG_00921 [Edhazardia aedis USNM 41457]
Length = 465
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 109/203 (53%), Positives = 143/203 (70%), Gaps = 8/203 (3%)
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DM AAPGGKTT+IAALM+N G++YAN++ R K++ +NL R+G+TNT+V DG E
Sbjct: 266 RVLDMCAAPGGKTTHIAALMQNNGILYANDIDKERCKAIQSNLSRLGITNTVVMCQDGRE 325
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
L N DR+LLDAPCSGTG+ISKD VK ++S +DI+ QK LI+ A M+
Sbjct: 326 LNLE---NFFDRILLDAPCSGTGIISKDPDVKINRSDKDIKNTVKTQKDLIMRAFKML-- 380
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSL 359
K GG +VYSTCS++V ENEAV+++ +KK +L+ GR GF +FR FHPS+
Sbjct: 381 --KVGGVLVYSTCSVLVDENEAVVNFLIKKDIGARLMELNTTIGRNGFTKFRGDFFHPSM 438
Query: 360 EKTRRFYPHVHNMDGFFVAKLKK 382
+ RR YPHV+NMDGFFVAKL K
Sbjct: 439 KMARRIYPHVNNMDGFFVAKLTK 461
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
YN++L L ++F E M+ +E EK RP +RTNTLK RR+DLA +LI RG+++DPL
Sbjct: 37 YNDYLREKLEKLFGKEECMQFMEESEKSRPTVIRTNTLKIRRKDLAKLLIGRGMDVDPL- 95
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
+W K GLVVY S VP+GATPEY+ G Y +Q ASSFLPV+ + + + I
Sbjct: 96 EWCKEGLVVYKSAVPVGATPEYLCGLYSVQGASSFLPVLNMDLHDCNKSI 145
>gi|389852628|ref|YP_006354862.1| hypothetical protein Py04_1213 [Pyrococcus sp. ST04]
gi|388249934|gb|AFK22787.1| hypothetical protein Py04_1213 [Pyrococcus sp. ST04]
Length = 309
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 175/292 (59%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+++ E+ EKP P C R NTLKT +L L+ +G + W++ G + I +
Sbjct: 27 VKIAEAMEKPLPRCFRVNTLKTSIAELTKRLMKKGFQFRKVP-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY+ G +Q ASS P +AL P+ E + DMAAAPGGK +YI+ LM+N G+IYA ++
Sbjct: 86 TPEYLTGLIYIQEASSMYPPVALEPRPGEIIADMAAAPGGKASYISQLMENKGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK NL R+GV NTI+ + + + LG+ DR+LLDAPC+G+G I K+
Sbjct: 146 GEERLKETRLNLSRLGVINTILIHKSSLYISE-LGIE-FDRILLDAPCTGSGTIHKNPER 203
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K++++++D++ C LQ ++I A++++ K GG +VYSTCS+ ENE VI + L+
Sbjct: 204 KSNRTMKDVKFCQGLQMKMIEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENF 259
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DVKL+P L +G R ++ RRFYP H GFFVAK+ K+
Sbjct: 260 DVKLLP--LKYGEPALTRPFGVELSEEIKNARRFYPDTHRTSGFFVAKIMKV 309
>gi|18977629|ref|NP_578986.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM
3638]
gi|397651750|ref|YP_006492331.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus
COM1]
gi|18893351|gb|AAL81381.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
gi|393189341|gb|AFN04039.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus
COM1]
Length = 310
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 175/292 (59%), Gaps = 11/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTLK ++ L+ +G + W++ G + I +
Sbjct: 27 IRIAEAMEKPLPRCFRVNTLKGTISEITKRLMKKGFQFTRVP-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY+ G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N GLI+A ++
Sbjct: 86 TPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYMAQLMENKGLIFAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN-TVDRVLLDAPCSGTGVISKDES 270
RLK NL R+GV NTI+ + + + LN + D++LLDAPC+G+G I K+
Sbjct: 146 DEERLKETRLNLSRLGVLNTILIHKSSLYIDE---LNMSFDKILLDAPCTGSGTIHKNPE 202
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
K +++L+DI+ C LQ ++I A++++ K GG +VYSTCS+ ENE VI +AL
Sbjct: 203 RKHNRTLDDIKFCQGLQMKMIEKALEVL----KPGGILVYSTCSLEPEENEFVIQWALDN 258
Query: 331 RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
D++L+P L +G + P ++K RRFYP H GFF+AK++K
Sbjct: 259 FDIELLP--LRYGEPALINPFGIELSPEIKKARRFYPDTHKTSGFFIAKIRK 308
>gi|408404001|ref|YP_006861984.1| NOL1/NOP2/sun family putative RNA methylase [Candidatus
Nitrososphaera gargensis Ga9.2]
gi|408364597|gb|AFU58327.1| putative NOL1/NOP2/sun family putative RNA methylase [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 318
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 187/317 (58%), Gaps = 17/317 (5%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L + YGY+ +L+ +E P ++ + ++ E+P +R NTLK R +L L ++G
Sbjct: 14 LAAKYGYDRWLVSRFLEYVPDIQ--DFMDRMERPPTQYIRVNTLKIGRDELEARLRSKGF 71
Query: 128 NLDPLSKWSKVGLVVYDSQVPI--GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185
L K + + V+ + P+ GAT EY+ G Y +Q SS + V AL + + V+D+
Sbjct: 72 EL----KRTVIPEVLAVEKAPMATGATNEYLLGHYYIQDLSSCMAVDALDVSKDQIVLDI 127
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
AAAPGGKTT++A M+NTG I A E R ++++ NL R GV NT + DG E+ K+
Sbjct: 128 AAAPGGKTTFMAQRMENTGSIVALEPNDRRARAMSFNLARCGVYNTCILRMDGLEVEKLQ 187
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
DRVLLDAPCS GVI+KD + KTS + +DI C+ Q +LI AA MV K+G
Sbjct: 188 A--KFDRVLLDAPCSCEGVIAKDTTRKTSHTRQDIDFCASRQDRLIEAAARMV----KAG 241
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKRD-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
G +VYSTCS ENE V+D L+K D + + P L +G G RF + F L+ RR
Sbjct: 242 GILVYSTCSFAPEENEMVVDRLLQKFDNITIEP--LKYGTSGLTRFGDIVFDGRLKNARR 299
Query: 365 FYPHVHNMDGFFVAKLK 381
YPH+H+ GFF+A+LK
Sbjct: 300 LYPHIHDTTGFFIARLK 316
>gi|337284479|ref|YP_004623953.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Pyrococcus yayanosii
CH1]
gi|334900413|gb|AEH24681.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Pyrococcus yayanosii
CH1]
Length = 309
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 173/292 (59%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+++ E+ EKP P C R NTL+ +L L +G + W++ G + I +
Sbjct: 27 LKIAEAMEKPLPRCFRVNTLRISVPELTKRLNKKGFQFKRVP-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P+ E V DMA+APGGKT+Y+A LMKN G+IYA ++
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALDPKPGEVVADMASAPGGKTSYMAQLMKNEGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK N+ R+GVTN ++ + + + LG+ DR+LLDAPC+G+G I K+
Sbjct: 146 GEERLKETRLNISRLGVTNVVLFHKSALYIDE-LGIE-FDRILLDAPCTGSGTIHKNPER 203
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K +++L+DI+ C LQ +L+ +D++ K GG +VYSTCS+ ENE VI + L
Sbjct: 204 KWNRALDDIKFCQKLQMRLLERGLDVL----KPGGILVYSTCSLEPEENEFVIQWVLDNF 259
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G R + K RRFYP H GFFVAK+KK+
Sbjct: 260 DVELLP--LKYGEPALRRPFGIELSEEIAKARRFYPDRHGTSGFFVAKIKKL 309
>gi|240103453|ref|YP_002959762.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
gi|239911007|gb|ACS33898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
Length = 309
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 173/292 (59%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTL+ L +L +G + W++ G + I +
Sbjct: 27 LSIAEAMEKPLPRCFRVNTLRIEIPKLTKLLNKKGFQFRRIP-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALEPKPGEVVADMAAAPGGKTSYLAQLMENEGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK NL R+GVTNT++ + + + LG+ D++LLDAPC+G+G I K+
Sbjct: 146 GEERLKETRLNLSRLGVTNTVLFHRSSLYIDE-LGVE-FDKILLDAPCTGSGTIHKNPER 203
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K ++++ED++ C LQ +++ + ++ + GG +VYSTCS+ ENE VI + L
Sbjct: 204 KANRTIEDVKFCQNLQMKMLEKGLSVL----RKGGILVYSTCSLEPEENEFVIQWVLDNF 259
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G R ++K RRFYP H GFFVAKL+K+
Sbjct: 260 DVELLP--LRYGEPALTRPFGIELSEEIKKARRFYPDRHGTSGFFVAKLRKL 309
>gi|350525803|ref|YP_002581368.2| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
gi|345650622|gb|EEB73106.2| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
Length = 337
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 174/292 (59%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTL+ L +L +G + W++ G + I +
Sbjct: 55 LAIAEAMEKPLPRCFRVNTLRIEVPKLTKLLNKKGFQFRRVP-WAREGFCLTREPFSITS 113
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P+ E V DMA+APGGKT+Y+A LM+N G+IYA ++
Sbjct: 114 TPEYLSGLLYIQEASSMYPPVALEPKPGETVADMASAPGGKTSYLAQLMENEGIIYAFDV 173
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK NL R+GVTNT++ + + + LG+ D++LLDAPC+G+G I K+
Sbjct: 174 GEDRLKETRLNLSRLGVTNTVLFHRSSLYIDE-LGVE-FDKILLDAPCTGSGTIHKNPER 231
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K ++++ED++ C LQ +++ A+ ++ + GG +VYSTCS+ ENE VI + L
Sbjct: 232 KANRTMEDVKFCQNLQMKMLEKALSVL----RKGGILVYSTCSLEPEENEFVIQWVLDNF 287
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G + ++K RRFYP H GFFVAKL+K+
Sbjct: 288 DVELLP--LRYGEPALTKPFGIELSEEIKKARRFYPDKHGTSGFFVAKLRKL 337
>gi|57640807|ref|YP_183285.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
gi|57159131|dbj|BAD85061.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
kodakarensis KOD1]
Length = 309
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 173/292 (59%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ E+P P C R NTL+ L +L +G + W++ G + I +
Sbjct: 27 LAIAEAMERPLPRCFRVNTLRIEVHKLTKLLNKKGFQFKRVP-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALGPKPGEVVADMAAAPGGKTSYMAQLMENGGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RL+ NL R+GVTNTI+ + + + LG+ D++LLDAPC+G+G I K+
Sbjct: 146 GEDRLRETRLNLSRLGVTNTILFHSSSLHIDE-LGVE-FDKILLDAPCTGSGTIHKNPER 203
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K ++++ED++ C LQ +L+ + ++ K GG +VYSTCS+ ENE VI + L
Sbjct: 204 KANRTMEDVKFCQGLQMKLLEKGLSVL----KKGGVLVYSTCSLEPEENEFVIQWVLDNF 259
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+V+L+P L +G + ++K RRFYP H GFFVAK+KK+
Sbjct: 260 EVELLP--LRYGEPALTKPFGIELSEEIKKARRFYPDRHGTSGFFVAKIKKL 309
>gi|14520982|ref|NP_126457.1| nucleolar protein [Pyrococcus abyssi GE5]
gi|5458199|emb|CAB49688.1| Nucleolar protein from the nop2 family [Pyrococcus abyssi GE5]
gi|380741536|tpe|CCE70170.1| TPA: nucleolar protein [Pyrococcus abyssi GE5]
Length = 311
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 174/292 (59%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + ++ EKP P C R NTLK ++L L +G + W++ G + I +
Sbjct: 29 LRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVP-WAREGFCLTREPFSITS 87
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY+ G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 88 TPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDV 147
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK NL R+GV N I+ + + + LG+ D++LLDAPC+G+G I K+
Sbjct: 148 DEDRLKETRINLSRLGVLNVILFHSSSLYIDQ-LGIE-FDKILLDAPCTGSGTIHKNPER 205
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K +++++DI+ C LQ +L+ A++++ K GG +VYSTCS+ ENE VI + L+
Sbjct: 206 KWNRTMDDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENF 261
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G R ++K RR YP VH GFFVAK++K+
Sbjct: 262 DVELLP--LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
>gi|409095647|ref|ZP_11215671.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus zilligii AN1]
Length = 309
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 171/292 (58%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTL+ L +L +G + W++ G + + +
Sbjct: 27 LAIAEAMEKPLPRCFRVNTLRIEVPKLTKLLNKKGFQFKRVP-WAREGFCLTREPFAVTS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALEPKPGETVADMAAAPGGKTSYLAQLMENKGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK NL R+GVTNT++ + + + LG+ D++LLDAPC+G+G I K+
Sbjct: 146 GEDRLKETRLNLSRLGVTNTVLFHSSSLHIEE-LGVE-FDKILLDAPCTGSGTIHKNPER 203
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K ++++ED++ C LQ +L+ + ++ K GG +VYSTCS+ ENE VI + L
Sbjct: 204 KANRTMEDVKFCQGLQMKLLEKGLSVL----KRGGILVYSTCSLEPEENEFVIQWVLDNF 259
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+V+L+P L G R + K RRFYP H GFFVAK+KK+
Sbjct: 260 EVELLP--LRHGEPALTRPFGIGLSEEIAKARRFYPDRHGTSGFFVAKIKKL 309
>gi|14591177|ref|NP_143253.1| proliferating-cell nucleolar protein p120 [Pyrococcus horikoshii
OT3]
gi|3257797|dbj|BAA30480.1| 315aa long hypothetical proliferating-cell nucleolar protein p120
[Pyrococcus horikoshii OT3]
Length = 315
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 171/293 (58%), Gaps = 11/293 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTLK +DL L +G + W+K G + I +
Sbjct: 33 IRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVP-WAKEGFCLTREPFSITS 91
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPE++ G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 92 TPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDV 151
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDAPCSGTGVISKDES 270
+RL+ NL R+GV N I+ + + + LN D++LLDAPC+G+G I K+
Sbjct: 152 DENRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPE 208
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
K +++++DI+ C LQ +L+ ++++ K GG +VYSTCS+ ENE VI +AL
Sbjct: 209 RKWNRTMDDIKFCQGLQMRLLEKGLEVL----KPGGILVYSTCSLEPEENEFVIQWALDN 264
Query: 331 RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G ++ RR YP VH GFF+AK++K+
Sbjct: 265 FDVELLP--LKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 315
>gi|390960428|ref|YP_006424262.1| hypothetical protein CL1_0256 [Thermococcus sp. CL1]
gi|390518736|gb|AFL94468.1| hypothetical protein CL1_0256 [Thermococcus sp. CL1]
Length = 309
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 172/292 (58%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ E+P P C R NTL+ L +L +G + W++ G + I +
Sbjct: 27 LAIAEAMERPLPRCFRVNTLRIEVPRLTKLLNKKGFQFRRVP-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPEY++G +Q ASS P +AL P E V DMAAAPGGKT+++A LM+N G+IYA ++
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALEPGPGETVADMAAAPGGKTSHMAQLMENRGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RLK NL R+GVTN ++ + + + LG+ D++LLDAPC+G+G I K+
Sbjct: 146 GEERLKETRLNLSRLGVTNAVLFHKSSLHIDE-LGVE-FDKILLDAPCTGSGTIHKNPER 203
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K +++++D++ C LQ +LI A++++ K GG +VYSTCS+ ENE VI + L
Sbjct: 204 KANRTMDDVKFCQGLQMKLIEKALEVL----KRGGVLVYSTCSLEPEENEFVIQWVLDNF 259
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L G + ++K RRFYP H GFFVAK+KK+
Sbjct: 260 DVELLP--LRHGEPALTKPFGVELSEEIKKARRFYPDRHGTSGFFVAKIKKL 309
>gi|332159596|ref|YP_004424875.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2]
gi|331035059|gb|AEC52871.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2]
Length = 309
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 169/292 (57%), Gaps = 9/292 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTLK ++L L +G + W++ G + I +
Sbjct: 27 LRIAEAMEKPLPRCFRVNTLKISIQELTKRLNKKGFQFKRVP-WAREGFCLTREPFSITS 85
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPE++ G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 86 TPEFLTGLIYIQEASSMYPPVALDPKPNEIVADMAAAPGGKTSYLAQLMENKGIIYAFDV 145
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
RL+ NL R+GV N ++ + + + LG+ D++LLDAPC+G+G I K+
Sbjct: 146 DEDRLRETRLNLSRLGVLNVVLFHSSSLHIDE-LGVE-FDKILLDAPCTGSGTIHKNPER 203
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K ++++EDI+ C LQ ++I A++++ K GG +VYSTCS+ ENE VI + L
Sbjct: 204 KWNRTIEDIKFCQGLQMKMIEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLDNF 259
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G + RR YP H GFF+AK++K+
Sbjct: 260 DVELLP--LKYGEPALTNPFGVELSEEIRNARRLYPDTHRTSGFFIAKIRKL 309
>gi|227828150|ref|YP_002829930.1| RNA methylase [Sulfolobus islandicus M.14.25]
gi|229585379|ref|YP_002843881.1| RNA methylase [Sulfolobus islandicus M.16.27]
gi|238620340|ref|YP_002915166.1| RNA methylase [Sulfolobus islandicus M.16.4]
gi|385773820|ref|YP_005646387.1| RNA methylase [Sulfolobus islandicus HVE10/4]
gi|385776455|ref|YP_005649023.1| RNA methylase [Sulfolobus islandicus REY15A]
gi|227459946|gb|ACP38632.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.14.25]
gi|228020429|gb|ACP55836.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.27]
gi|238381410|gb|ACR42498.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.4]
gi|323475203|gb|ADX85809.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus REY15A]
gi|323477935|gb|ADX83173.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus HVE10/4]
Length = 339
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 189/318 (59%), Gaps = 9/318 (2%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVE-LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
L S YG+ +++I + MF E L E + S P +R NTL+T + L +++ +G
Sbjct: 27 LASKYGFLDYMIERYLNMFSSKEELEEYLNSCSFPLKKSIRCNTLRTDCKKLEEMMSEKG 86
Query: 127 VNLDPLSKWSKVGLVVYDS--QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L+ + KW + G ++ + + +G+T EY+ G+Y +Q +S +P L P + + V+D
Sbjct: 87 FILEKV-KWLQHGYIIKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSQDDFVLD 145
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAAAPGGKTT ++ +M+N GL+ A E K SR+++L +N++R+G N ++ D L ++
Sbjct: 146 MAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVNRLGAENVVLVKTDVLNLRRI 205
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
DR+LLDAPCSG G+I KD + + +++D++ +Y Q LI A +++ K
Sbjct: 206 NKFQ-FDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAYSQLSLIEIAYELL----KE 260
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
GGYIVYSTCS+ ENE ++++A+++ +K + G+V + RF+ ++ R
Sbjct: 261 GGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVEYYNTRFNIDVKNCLR 320
Query: 365 FYPHVHNMDGFFVAKLKK 382
F+PH +GFF+ LKK
Sbjct: 321 FFPHTQGTEGFFLCLLKK 338
>gi|300699440|ref|XP_002994849.1| hypothetical protein NCER_102567 [Nosema ceranae BRL01]
gi|239601481|gb|EEQ81178.1| hypothetical protein NCER_102567 [Nosema ceranae BRL01]
Length = 185
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/183 (54%), Positives = 136/183 (74%), Gaps = 8/183 (4%)
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
+W LV+++S VP+GATPEY+AG+ ++Q ASS L V+ L +E ++IDM AAPGGK+
Sbjct: 7 EWCDDALVIFNSSVPVGATPEYLAGYLIIQGASSMLSVLNLDVKENLKIIDMCAAPGGKS 66
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
YI+ALM NTG++Y+N++ R+K+L +NL RMGVTN IV N D +L GL VDRV
Sbjct: 67 QYISALMNNTGVLYSNDISDDRIKALRSNLLRMGVTNAIVTNLDARKLN--FGL--VDRV 122
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVISKD S+K S++++DI+K + QK+LIL DM+ K GG +VYSTC
Sbjct: 123 LLDAPCSGTGVISKDPSIKMSRTVDDIRKTVFRQKELILKGFDML----KKGGVMVYSTC 178
Query: 314 SIM 316
S++
Sbjct: 179 SVL 181
>gi|227830857|ref|YP_002832637.1| RNA methylase [Sulfolobus islandicus L.S.2.15]
gi|229579743|ref|YP_002838142.1| RNA methylase [Sulfolobus islandicus Y.G.57.14]
gi|284998364|ref|YP_003420132.1| RNA methylase [Sulfolobus islandicus L.D.8.5]
gi|227457305|gb|ACP35992.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
L.S.2.15]
gi|228010458|gb|ACP46220.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
Y.G.57.14]
gi|284446260|gb|ADB87762.1| putative RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
L.D.8.5]
Length = 339
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 189/318 (59%), Gaps = 9/318 (2%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVE-LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
L S YG+ +++I + MF E L E + S P +R NTL+T + L +++ +G
Sbjct: 27 LASKYGFLDYMIERYLNMFSSKEELEEYLNSCSFPLKKSIRCNTLRTDCKKLEEMMSEKG 86
Query: 127 VNLDPLSKWSKVGLVVYDS--QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L+ + KW + G ++ + + +G+T EY+ G+Y +Q +S +P L P + + V+D
Sbjct: 87 FILEKV-KWLQHGYIIKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSQDDFVLD 145
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAAAPGGKTT ++ +M+N GL+ A E K SR+++L +N++R+G N ++ D L ++
Sbjct: 146 MAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVNRLGAENVVLVKTDVLNLRRI 205
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
DR+LLDAPCSG G+I KD + + +++D++ +Y Q LI A +++ K
Sbjct: 206 NKFQ-FDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAYSQLSLIEIAYELL----KE 260
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
GGYIVYSTCS+ ENE ++++A+++ +K + G+V + +F+ ++ R
Sbjct: 261 GGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVEYYNTKFNIDVKNCLR 320
Query: 365 FYPHVHNMDGFFVAKLKK 382
F+PH +GFF+ LKK
Sbjct: 321 FFPHTQGTEGFFLCLLKK 338
>gi|229581588|ref|YP_002839987.1| RNA methylase [Sulfolobus islandicus Y.N.15.51]
gi|228012304|gb|ACP48065.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
Y.N.15.51]
Length = 339
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 189/320 (59%), Gaps = 13/320 (4%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVE-LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
L S YG+ +++I + MF E L E + S P +R NTL+T + L +++ +G
Sbjct: 27 LASKYGFLDYMIERYLNMFSSKEELEEYLNSCSFPLKKSIRCNTLRTDCKKLEEMMSEKG 86
Query: 127 VNLDPLSKWSKVGLVVYDSQVP----IGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182
L+ + KW + G ++ + P +G+T EY+ G+Y +Q +S +P L P + + V
Sbjct: 87 FILEKV-KWLQHGYII--KRTPPMPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSQDDFV 143
Query: 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242
+DMAAAPGGKTT ++ +M+N GL+ A E K SR+++L +N++R+G N ++ D L
Sbjct: 144 LDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVNRLGAENVVLVKTDVLNLR 203
Query: 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
++ DR+LLDAPCSG G+I KD + + +++D++ +Y Q LI A +++
Sbjct: 204 RINKFQ-FDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAYSQLSLIEIAYELL---- 258
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
K GGYIVYSTCS+ ENE ++++A+++ +K + G+V + +F+ ++
Sbjct: 259 KEGGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVEYYNTKFNIDVKNC 318
Query: 363 RRFYPHVHNMDGFFVAKLKK 382
RF+PH +GFF+ LKK
Sbjct: 319 LRFFPHTQGTEGFFLCLLKK 338
>gi|34809569|pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 168/293 (57%), Gaps = 11/293 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTLK +DL L +G + W+K G + I +
Sbjct: 33 IRIAEAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVP-WAKEGFCLTREPFSITS 91
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPE++ G +Q ASS P +AL P+ E V D AAAPGGKT+Y+A L +N G+IYA ++
Sbjct: 92 TPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDV 151
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDAPCSGTGVISKDES 270
+RL+ NL R+GV N I+ + + + LN D++LLDAPC+G+G I K+
Sbjct: 152 DENRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPE 208
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
K +++ +DI+ C LQ +L+ ++++ K GG +VYSTCS+ ENE VI +AL
Sbjct: 209 RKWNRTXDDIKFCQGLQXRLLEKGLEVL----KPGGILVYSTCSLEPEENEFVIQWALDN 264
Query: 331 RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G ++ RR YP VH GFF+AK++K+
Sbjct: 265 FDVELLP--LKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 315
>gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 323
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 178/319 (55%), Gaps = 13/319 (4%)
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN-R 125
+L YG +++ + E L++ E RP +RTNT+ +L VL R
Sbjct: 12 ELAERYGVRPYMVARYLTFLGRSETERLLKHMEDIRP-AIRTNTILIDPEELRRVLEEKR 70
Query: 126 GVNLDPLSKWSKVGL-VVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
G L + VG ++ D + IGAT EYM G+Y+ Q A+S LP + L P+ +RV+D
Sbjct: 71 GFELKRCPEPVDVGFWILNDPPISIGATLEYMMGYYVPQDAASMLPPVVLDPKPGDRVLD 130
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
AAPGGKTT++A LM N G + A ++ R+++L +NL R GV N + + +LP
Sbjct: 131 ACAAPGGKTTHLAQLMDNEGTLIAIDVDPDRMRALKSNLARCGVANAVALRMNALDLPST 190
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
DR+LLDAPC+G G I KD S KTS+ EDI C+ LQ++LI A +D++ +
Sbjct: 191 DW--EFDRILLDAPCTGEGTIHKDPSRKTSRDPEDIATCARLQRRLIDAVVDVL----RP 244
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT-R 363
GG +VYSTC+ ENE ++ YA+ + ++ P + + +G R P + +T
Sbjct: 245 GGVLVYSTCTFSPEENELIVQYAVDEHGLEPEPVDVGWADRG---LRVPGVEPKVRRTCA 301
Query: 364 RFYPHVHNMDGFFVAKLKK 382
R YPH H M FFVA+L+K
Sbjct: 302 RLYPHRHGMGIFFVARLRK 320
>gi|146302792|ref|YP_001190108.1| ribosomal RNA methyltransferase [Metallosphaera sedula DSM 5348]
gi|145701042|gb|ABP94184.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera sedula DSM
5348]
Length = 336
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 183/315 (58%), Gaps = 14/315 (4%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
YG+ ++++ +E F + + S P +R N+LK L L ++G +L
Sbjct: 31 YGFLDYMVERYLE-FLGEGTEDFLSSCSVPLTKSIRCNSLKIDCGKLEKRLTDKGFSLKR 89
Query: 132 LSKWSKVGLVVYDSQVP----IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
+ +WS+ G V +VP +GAT EYM GFY +Q +S +P L+P+E E V+DMA+
Sbjct: 90 I-EWSRFGYRV--EKVPPRPTLGATVEYMKGFYYIQGEASMIPPEVLSPKEGELVLDMAS 146
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
+PGGKTT++A LM N G I A E +RL+ + +N+ R+GV+N ++ G ++PK LG+
Sbjct: 147 SPGGKTTHMAQLMNNRGTIVALEKNPARLRKIRSNISRLGVSNVVLLWMGGEDVPK-LGI 205
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
D++LLDAPCSG G+I D S KT ED++ Q L+ + ++ K GGY
Sbjct: 206 E-FDKILLDAPCSGEGLIPLDPSRKTKTKPEDLKNFQRTQLTLLASGFKVL----KRGGY 260
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
+VYSTCSI E+E ++D+A+K +++ G +G F+ F P L + R YP
Sbjct: 261 MVYSTCSIAPEEDEVIVDFAVKYLGMRVEKIQGIPGERGLTSFKGLSFSPELTQCLRIYP 320
Query: 368 HVHNMDGFFVAKLKK 382
H+ +M+GFFV L+K
Sbjct: 321 HLQHMEGFFVCLLRK 335
>gi|15897196|ref|NP_341801.1| proliferating cell nuclear antigen [Sulfolobus solfataricus P2]
gi|284174441|ref|ZP_06388410.1| proliferating cell nuclear antigen [Sulfolobus solfataricus 98/2]
gi|384433709|ref|YP_005643067.1| RNA methylase [Sulfolobus solfataricus 98/2]
gi|13813389|gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog [Sulfolobus
solfataricus P2]
gi|261601863|gb|ACX91466.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus solfataricus 98/2]
Length = 339
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 188/320 (58%), Gaps = 13/320 (4%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVE-LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
L S Y + +++I + MF E L E + S P +R NTLKT + L ++++ +G
Sbjct: 27 LASKYRFLDYMIERYLNMFSTEEELEEYLNSCSFPLKKSIRCNTLKTDCKKLEEIMLEKG 86
Query: 127 VNLDPLSKWSKVGLVVYDSQVP----IGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182
L+ + KW + G VV + P +G+T EY+ G+Y +Q +S +P L P + V
Sbjct: 87 FVLEKV-KWLQHGYVV--KRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSYDDFV 143
Query: 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242
+DMAAAPGGKTT ++ +M+N GL+ A E K SR+++L +N++R+G N ++ D L
Sbjct: 144 LDMAAAPGGKTTQLSQIMQNKGLVIAVEKKRSRIRALLSNVNRLGAENVVLIKTDALNLI 203
Query: 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+ + D++LLDAPCSG G+I KD + + +++D++ ++LQ LI A +++
Sbjct: 204 NI-NKSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDLRDFAHLQLSLIEIAYELL---- 258
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
K GGYIVYSTCS+ E+E ++++A+++ +K + G++ + RF ++
Sbjct: 259 KKGGYIVYSTCSVAPEEDELIVNFAIEELGMKAMSVEGYPASNGYIEYYTTRFSNDVKNC 318
Query: 363 RRFYPHVHNMDGFFVAKLKK 382
RF+PH +GFF+ LKK
Sbjct: 319 LRFFPHKQGTEGFFLCLLKK 338
>gi|302412531|ref|XP_003004098.1| Nop16-like protein NOP2 [Verticillium albo-atrum VaMs.102]
gi|261356674|gb|EEY19102.1| Nop16-like protein NOP2 [Verticillium albo-atrum VaMs.102]
Length = 713
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 95/175 (54%), Positives = 125/175 (71%), Gaps = 11/175 (6%)
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
+G N +V NYD E PK +G DRVLLDAPCSGTGVI+KD SVKT+K+ D +
Sbjct: 355 LGARNVVVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAKDPSVKTNKTERDFMMLPH 412
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344
+QKQL+LAAID V+ NSK+GG+IVYSTCS+ + ENEAV+ YAL +R +VKLV GL FG+
Sbjct: 413 MQKQLLLAAIDSVNHNSKTGGFIVYSTCSVTIEENEAVVQYALSRRPNVKLVDTGLPFGK 472
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETV 399
+GF + +F SL+ TRR+YPH +N+DGFFV+K +K+ GP P++ V
Sbjct: 473 EGFTSYMGKKFDASLKLTRRYYPHTYNVDGFFVSKFQKV--------GPTPAKAV 519
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI E L E ++K PDL L+ R+ + VR+L +F L+ G SR EY
Sbjct: 195 LQTNIAETG--MVLDDDNEDPKKKALAPDLHVLRNRMTDNVRILEDFAKLADPGRSRSEY 252
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
QL D+ YYGY+E+L L +F P E E+ E PRPI +RTNTL+T RRDLA
Sbjct: 253 TAQLIKDICGYYGYSEYLAEKLFNLFSPSEAFSFFEANESPRPIVIRTNTLRTHRRDLAQ 312
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LI+RGV L+P+ KWSKVGL V++S +P+GA+PEY+AG Y+L A
Sbjct: 313 SLISRGVVLEPVGKWSKVGLQVFESSIPLGASPEYLAGHYILLGA 357
>gi|346975283|gb|EGY18735.1| Nop16-like protein NOP2 [Verticillium dahliae VdLs.17]
Length = 703
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 126/182 (69%), Gaps = 11/182 (6%)
Query: 219 LTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLE 278
L + +G N +V NYD E PK +G DRVLLDAPCSGTGVI+KD SVKT+K+
Sbjct: 348 LAGHYILLGARNVVVSNYDAREFPKPMG--GFDRVLLDAPCSGTGVIAKDPSVKTNKTER 405
Query: 279 DIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVP 337
D ++QKQL+LAAID V+ NSK+GG+IVYSTCS+ + ENEAV+ YAL +R +VKLV
Sbjct: 406 DFMMLPHMQKQLLLAAIDSVNHNSKTGGFIVYSTCSVTIEENEAVVQYALSRRPNVKLVD 465
Query: 338 CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSE 397
GL FG++GF + F SL+ TRR+YPH +N+DGFFV+K +K+ GP P++
Sbjct: 466 TGLPFGKEGFTSYMGKTFDASLKLTRRYYPHTYNVDGFFVSKFQKV--------GPTPAK 517
Query: 398 TV 399
V
Sbjct: 518 AV 519
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI E L E ++K PDL L+ R+ + VR+L +F L+ G SR EY
Sbjct: 195 LQTNIAETG--MVLDDDNEDPKKKALAPDLHVLRNRMTDNVRILEDFAKLADPGRSRSEY 252
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
QL D+ YYGY+E+L L +F P E E+ E PRPI +RTNTL+T RRDLA
Sbjct: 253 TAQLIKDICGYYGYSEYLAEKLFNLFSPSEAFSFFEANESPRPIVIRTNTLRTHRRDLAQ 312
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LI+RGV L+P+ KWSKVGL V++S +P+GA+PEY+AG Y+L A
Sbjct: 313 SLISRGVVLEPVGKWSKVGLQVFESSIPLGASPEYLAGHYILLGA 357
>gi|330833874|ref|YP_004408602.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera cuprina Ar-4]
gi|329566013|gb|AEB94118.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera cuprina Ar-4]
Length = 336
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 183/318 (57%), Gaps = 10/318 (3%)
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
+L YG+ E++I + F + E + S P +R N+LK + L++ L N+G
Sbjct: 26 ELAKKYGFLEYMIERYIH-FLGSKTEEFLSSCTFPLRKAIRCNSLKIDCKTLSENLENKG 84
Query: 127 VNLDPLSKWSKVGLVVYDS-QVP-IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L + +WSK G V S P IG+T EYM G Y +Q +S +P AL+P+E E V+D
Sbjct: 85 FTLSRI-EWSKFGYRVEKSPSTPSIGSTIEYMKGQYYIQGEASMIPPEALSPKEGELVLD 143
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MA++PGGKTT+IA LM N+G I A E +RLK + +N+ R+GVTN I+ G E+ K
Sbjct: 144 MASSPGGKTTHIAQLMNNSGSIIALESNPARLKKIRSNIARLGVTNVILLLLRGEEVSK- 202
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
LGL T D++LLDAPCSG G+I D++ KT +D+++ Q L++ ++ N
Sbjct: 203 LGL-TFDKILLDAPCSGEGLIPIDKTRKTKTLPDDLKRFQRTQLNLLVTGYKVLKKN--- 258
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
G +VYSTCSI E+E ++++A+K ++ G +G ++ F ++ R
Sbjct: 259 -GLMVYSTCSIAPEEDEVIVNFAIKYLGMRAEMITGFPGERGLSSYKGIEFSEGIQNCLR 317
Query: 365 FYPHVHNMDGFFVAKLKK 382
YPH M+GFFV L+K
Sbjct: 318 TYPHTQKMEGFFVCLLRK 335
>gi|332796458|ref|YP_004457958.1| RNA methylase [Acidianus hospitalis W1]
gi|332694193|gb|AEE93660.1| RNA methylase, NOL1/NOP2/sun family [Acidianus hospitalis W1]
Length = 335
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 181/319 (56%), Gaps = 10/319 (3%)
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
++L YG+ ++++ + +F E + + S P +R NTLK +L + +
Sbjct: 24 IELSRKYGFLDYMVERYLHIFRH-EAEDFLYSCNFPLKKSIRCNTLKIDCNELESRMEQK 82
Query: 126 GVNLDPLSKWSKVGLVVYDS--QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
G L+ +S W K G +V + + +GAT EY+ G+Y +Q +S +P L P + V+
Sbjct: 83 GFKLEKVS-WLKHGYIVKKAPPKPSLGATLEYLQGYYYIQGLASMVPAYVLNPSSSDTVL 141
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DMAAAPGGKTT ++ +M N GLI A E R+ SL +N+ R+GV N ++ D L K
Sbjct: 142 DMAAAPGGKTTQLSQIMNNEGLIVAVEKSRLRVTSLLSNISRLGVRNVLLLRSDVRTLEK 201
Query: 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303
+ D++LLDAPCSG G+I +D+S KT SL+++++ S+ Q QLI A ++ K
Sbjct: 202 T--TLSFDKILLDAPCSGEGLIPEDQSRKTKTSLDELKRFSFTQLQLIYTAYKLL----K 255
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
GG +VYSTCSI E+E ++++A+++ +K + G V + F+ +
Sbjct: 256 KGGELVYSTCSIAPEEDEMIVNFAIEELGMKAIKISGYPAENGIVEYNGVSFNEEVSNCI 315
Query: 364 RFYPHVHNMDGFFVAKLKK 382
RFYPH + +GFF+ LKK
Sbjct: 316 RFYPHKNGTEGFFICHLKK 334
>gi|429217623|ref|YP_007175613.1| tRNA/rRNA cytosine-C5-methylase [Caldisphaera lagunensis DSM 15908]
gi|429134152|gb|AFZ71164.1| tRNA/rRNA cytosine-C5-methylase [Caldisphaera lagunensis DSM 15908]
Length = 330
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 173/318 (54%), Gaps = 10/318 (3%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L YGY+++++ +++ E ++L+E+ E P P +R N R +L L+N+G
Sbjct: 23 LAEKYGYSDYIVERYLKLLDN-EAIDLLEANEIPMPQTIRCNDFLIRCDELEKRLVNKGF 81
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
+ + + G + S +GAT EY+ G+Y LQ S L V + P++ +IDMA+
Sbjct: 82 KIKKIP-FLPHGYEIISSPYKVGATHEYLMGYYYLQDPGSMLVVYLMNPKKNSFIIDMAS 140
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGK++ I L K+ + + E+K R+KSL +NL RMG ++ I+ D + L L
Sbjct: 141 APGGKSSQILQLTKDNVKLVSVELKKDRIKSLRSNLQRMGFSSYIILEIDARK----LSL 196
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
D +LLD+P SG G+I KD K S+ D++K LQ QL+ AIDM+ K G
Sbjct: 197 KDADMILLDSPSSGEGIIRKDPKRKKSRPRSDMKKIHMLQFQLLNKAIDMI----KPEGE 252
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
I Y+ CS + E E VID L++ +V ++ G F+ F +F ++ R +P
Sbjct: 253 ITYAACSTAIEEGEYVIDKILRRNEVDILNTYSPIGEHAFIEFNGVKFDDRIKNCIRLWP 312
Query: 368 HVHNMDGFFVAKLKKMSN 385
H H +GFF+ +LKK N
Sbjct: 313 HKHGTEGFFICRLKKNQN 330
>gi|385811289|ref|YP_005847685.1| tRNA/rRNA cytosine-C5-methylase [Ignavibacterium album JCM 16511]
gi|383803337|gb|AFH50417.1| tRNA/rRNA cytosine-C5-methylase [Ignavibacterium album JCM 16511]
Length = 477
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 177/322 (54%), Gaps = 17/322 (5%)
Query: 90 ELMELIESFEKPRPI-CLRTNTLKTRRRDLADVLINRG-VNLDPLSKWSKVGLVVYDSQV 147
E E + + + PI LR NT K L +L + + + ++ + K V+ D
Sbjct: 18 ESAEAYQQYIQQTPIDYLRVNTNKITVDALQKLLKEKYRIQTELVANFPKALKVISDEDD 77
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
IG T E + GFY +Q SS LP +AL P E E V+D+ APG KTT +A +M N G +
Sbjct: 78 LIGKTVEQILGFYYIQGLSSMLPPIALNPNESELVMDLCGAPGSKTTQMAEMMNNRGTLI 137
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE+ +R+KSL NL R+ + NT + N+ G L KV N D+VL+DAPCSG G+I K
Sbjct: 138 ANEVDINRIKSLVFNLDRLNIINTGILNFKGEILSKVYN-NYFDKVLVDAPCSGLGIIQK 196
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
E V S++ + LQ +L++AAI M +K GG IVYSTC++ V ENE VID
Sbjct: 197 KEEVSKWWSIDHANRLHDLQTKLLVAAIKM----AKVGGEIVYSTCTLSVEENELVIDTI 252
Query: 328 LKKRDVKLVPCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
LK V++V L + F+++ + + +EK R P DGFF+ KLKK+S +
Sbjct: 253 LKNYPVEIVDVELPVKTYRAFIKYDGIKLNSQIEKAIRILPWEIESDGFFLVKLKKISET 312
Query: 387 KKTSAGPQPSETVEQQTPESNV 408
+P E + TP S++
Sbjct: 313 -------EPMEKI--YTPGSDI 325
>gi|428776642|ref|YP_007168429.1| RNA methylase [Halothece sp. PCC 7418]
gi|428690921|gb|AFZ44215.1| RNA methylase, NOL1/NOP2/sun family [Halothece sp. PCC 7418]
Length = 464
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 167/299 (55%), Gaps = 11/299 (3%)
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
+ +P P C+R N LKT + L ++ + +PLS W + + + P G T +
Sbjct: 23 AIAQPLPTCIRVNPLKTTSVAVKQFLESQHLWFEPLS-WYPDAFRIRNWEKP-GLTLPFA 80
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
+G+Y LQ + V L PQ ERVID+ AAPGGKT IA ++ TG++ ANE + SRL
Sbjct: 81 SGWYNLQEEIALTAVKVLDPQPGERVIDLCAAPGGKTVQIATRLQGTGMVVANEAQISRL 140
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
L A L R+GV+N ++ NYDG +P L ++ DRVL+D PCSG G + K + +
Sbjct: 141 SQLRAMLDRIGVSNVMMSNYDGTSIP--LQNHSFDRVLVDVPCSGEGTLRKGKMTRKQHR 198
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336
L +K + QK+L+ A+ +V N G IVYSTC+ ENEAVID L +R + L
Sbjct: 199 LRYSEKIATTQKKLLHRALQLVKPN----GIIVYSTCTFAPEENEAVIDAVLGERGI-LE 253
Query: 337 PCGLDF--GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGP 393
+ G G +++ F L + +R++PH ++ GFFVA++++ + + +A P
Sbjct: 254 SAAISHLKGMSGLQQWQGQTFRKDLVEAQRYFPHFNDTGGFFVARIRRSESHLEPTAAP 312
>gi|238597450|ref|XP_002394331.1| hypothetical protein MPER_05797 [Moniliophthora perniciosa FA553]
gi|215463191|gb|EEB95261.1| hypothetical protein MPER_05797 [Moniliophthora perniciosa FA553]
Length = 207
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
DRVLLDAPCSGTGVISKD SVK +KS D ++LQKQLIL A+D V +SK+GGY+VY
Sbjct: 6 DRVLLDAPCSGTGVISKDSSVKVNKSERDFTLLAHLQKQLILCALDSVSPDSKTGGYVVY 65
Query: 311 STCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STCS+ V ENEAV+DYAL+KR +VKLV G+ FGR+G+ ++R F+PS++ TRRFYPHV
Sbjct: 66 STCSVTVDENEAVVDYALRKRPNVKLVDTGIGFGREGYTKYRGKVFNPSVKLTRRFYPHV 125
Query: 370 HNMDGFFVAKLKKMSNSKKT 389
HNMDGF+VAK K SK T
Sbjct: 126 HNMDGFYVAKFKVEKRSKMT 145
>gi|343476496|emb|CCD12411.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 205
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 133/210 (63%), Gaps = 22/210 (10%)
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
+ DRVLLDAPC+GTG+IS+D+S+KTSK ED+Q+ S LQ+ L+L+AID + + GG
Sbjct: 1 MRNFDRVLLDAPCTGTGIISRDKSIKTSKQYEDVQRASQLQRALLLSAIDAL----RVGG 56
Query: 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFY 366
Y+VYSTCS +V ENEAV+D+AL +RDV +V GL FGR G ++R HRF+ L+ RR +
Sbjct: 57 YLVYSTCSFLVEENEAVVDFALHRRDVTIVETGLPFGRPGLAKYRHHRFNDKLQHARRLF 116
Query: 367 PHVHNMDGFFVAKLKKMS---------------NSKKTSAGPQPSETVEQQTPE--SNVS 409
PHVHNMDGFFV KLKK+S N + T G +V + P +V
Sbjct: 117 PHVHNMDGFFVCKLKKLSNEANGAKVPLEEDDNNERGTRKGGAVKGSVRGKRPREGGDVQ 176
Query: 410 NGDKKTEENSEQVLMKKATTKAKDLKKKTS 439
G K TE S ++ + T K ++K K++
Sbjct: 177 KGAKATERRS-RISVPPPTKKVTNIKAKSA 205
>gi|342306137|dbj|BAK54226.1| RNA (m5C) methyltransferase [Sulfolobus tokodaii str. 7]
Length = 335
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 175/320 (54%), Gaps = 11/320 (3%)
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
+ L S Y + +++ +++ E + + S P +R N L L ++ N+
Sbjct: 23 ISLASKYKFLSYMVERYIKIMGEEETEDFLYSCSFPLKKSVRCNDLLIECNKLEKIMENK 82
Query: 126 GVNLDPLSKWSKVGLVV--YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
G L+ +S W K G +V Y S+ +GAT EY++G+Y +Q +S +P L P E + V+
Sbjct: 83 GFKLEKVS-WLKHGYIVKQYPSKPSLGATIEYLSGYYYIQGLASMVPPYVLDPNENDLVL 141
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DMAAAPG KTT +A LMKN GLI A E R+KSL +N++RM + N ++ D L K
Sbjct: 142 DMAAAPGSKTTQLAQLMKNKGLIVAVEKSRERIKSLYSNVNRMKIKNVVLLRADARILRK 201
Query: 244 VLGLNT-VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
LN +++LLD PCSG G+I +D S KT ++ED++ + Q QL L ID+
Sbjct: 202 ---LNIPFNKILLDVPCSGEGLIPEDPSRKTKTTIEDLK--IFFQNQLEL--IDIAYNIL 254
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
+ GG +VYS+CSI ENEAV++Y ++ K G F +F SL
Sbjct: 255 EPGGILVYSSCSIAPEENEAVVNYIIENYGAKTDKIYGYPATSGITEFNGIKFDESLRNC 314
Query: 363 RRFYPHVHNMDGFFVAKLKK 382
RFYPH +GFFV K+ K
Sbjct: 315 IRFYPHKSGTEGFFVCKIIK 334
>gi|374633149|ref|ZP_09705516.1| NOL1/NOP2/sun family putative RNA methylase [Metallosphaera
yellowstonensis MK1]
gi|373524633|gb|EHP69510.1| NOL1/NOP2/sun family putative RNA methylase [Metallosphaera
yellowstonensis MK1]
Length = 336
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 183/323 (56%), Gaps = 20/323 (6%)
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
+L YG+ E+++ + +F + ++S LR NTL+T + L D + RG
Sbjct: 26 ELARKYGFLEYMVERYLNIFGS-DAEIFMKSCSAQLKRSLRCNTLRTDCKKLEDRMNERG 84
Query: 127 VNLDPLSKWSKVGLVVYDSQV--PIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L +S W++ G VV ++ V +G+T EYM G+Y +Q +S +P L+P E + V+D
Sbjct: 85 FKLSKVS-WTRYGYVVENTPVRPTLGSTLEYMKGYYYIQGLASMIPPEVLSPSEDDLVLD 143
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAA+PGGKT+ +A LM N G+I A E +RL+ L +NL R+GV NTI G+ + +
Sbjct: 144 MAASPGGKTSQLAQLMGNRGVIVALEKNTARLRRLNSNLARLGVANTITVPIPGDYVSSI 203
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
G+ D VLLD+PCSG G++ D S +T + +++ +Q L++A I + +
Sbjct: 204 -GIK-FDSVLLDSPCSGEGLLPVDPSRRTKTLPQHLREFQRVQLSLLIAGIRSL----RK 257
Query: 305 GGYIVYSTCSIMVTENEAVIDYA-----LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
GG +VYSTCSI ENE ++++A L+ +++ +P G V ++ RF +
Sbjct: 258 GGKLVYSTCSIAPEENEVIVNFAVEKFGLRTEEIRGIP-----ADPGLVEYKGVRFSEDI 312
Query: 360 EKTRRFYPHVHNMDGFFVAKLKK 382
+K R YPH H +GFFV ++K
Sbjct: 313 KKCIRLYPHKHGTEGFFVCSMRK 335
>gi|256811186|ref|YP_003128555.1| RNA methylase [Methanocaldococcus fervens AG86]
gi|256794386|gb|ACV25055.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus fervens
AG86]
Length = 265
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 168/281 (59%), Gaps = 22/281 (7%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L ++GV L + V S IG+TPEY+ G+YM QS
Sbjct: 4 IRVNTLKINPDVLKKRLEDKGVVLK--ETFLDYAFEVIKSPFSIGSTPEYLFGYYMPQSI 61
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E++ ++DM AAPGGKTT++A LMKN G I A E+ +R+K+L +N++R
Sbjct: 62 SSMIPPIVLNPKEQDFILDMCAAPGGKTTHLAQLMKNNGTIVAVEISKTRVKALKSNINR 121
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + KD +V S EDI+ C
Sbjct: 122 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKDRNV----SKEDIKYC 177
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDF 342
S QK+LI ID++ K GG +VYSTCS+ + ENE VI Y L+KR DV+L+ D
Sbjct: 178 SLRQKELIDIGIDLL----KEGGELVYSTCSMEIEENEEVIRYILQKRDDVELIKINKDE 233
Query: 343 GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ V+ +E T R +P + FF+AKL+K+
Sbjct: 234 FKGINVK------SGYIEGTLRVFPP---NEPFFIAKLRKI 265
>gi|444375577|ref|ZP_21174831.1| Ribosomal RNA small subunit methyltransferase F [Enterovibrio sp.
AK16]
gi|443680307|gb|ELT86953.1| Ribosomal RNA small subunit methyltransferase F [Enterovibrio sp.
AK16]
Length = 476
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 161/299 (53%), Gaps = 17/299 (5%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD---S 145
+ + + IES ++P LR NTLK D + +G NL P+ W G + D
Sbjct: 23 LSMTDFIESCKRPLRRSLRVNTLKISVEDFLERANEKGWNLSPVP-WCDTGFWLDDYDED 81
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQE--KERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS LPV AL + RV+DMAAAPG KTT IAA + N
Sbjct: 82 NVPLGNTAEHMAGLFYIQEASSMLPVTALLENDITLNRVLDMAAAPGSKTTQIAAALNNE 141
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
GL+ ANE ASR+K L ANL R GV N+ + NYDG L T D +LLDAPCSG G
Sbjct: 142 GLLVANEYSASRVKVLHANLLRCGVVNSALTNYDGRVFGDWLP-ETFDAILLDAPCSGEG 200
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD ++ SLE +Q + Q+ LI++A + K GG +VYSTC++ EN+ +
Sbjct: 201 TIRKDADAFSNWSLESVQDIANTQRDLIVSAFHAL----KPGGTMVYSTCTLNHDENQHI 256
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ + LD +G + E +P + + +GFFVA+LKK
Sbjct: 257 CHFIKDTFGDAVEFVSLDDLFEGAAA------ACTEEGFLHVFPQIFDSEGFFVARLKK 309
>gi|15920491|ref|NP_376160.1| Sun family protein [Sulfolobus tokodaii str. 7]
Length = 353
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 175/320 (54%), Gaps = 11/320 (3%)
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
+ L S Y + +++ +++ E + + S P +R N L L ++ N+
Sbjct: 41 ISLASKYKFLSYMVERYIKIMGEEETEDFLYSCSFPLKKSVRCNDLLIECNKLEKIMENK 100
Query: 126 GVNLDPLSKWSKVGLVV--YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
G L+ +S W K G +V Y S+ +GAT EY++G+Y +Q +S +P L P E + V+
Sbjct: 101 GFKLEKVS-WLKHGYIVKQYPSKPSLGATIEYLSGYYYIQGLASMVPPYVLDPNENDLVL 159
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
DMAAAPG KTT +A LMKN GLI A E R+KSL +N++RM + N ++ D L K
Sbjct: 160 DMAAAPGSKTTQLAQLMKNKGLIVAVEKSRERIKSLYSNVNRMKIKNVVLLRADARILRK 219
Query: 244 VLGLNT-VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
LN +++LLD PCSG G+I +D S KT ++ED++ + Q QL L ID+
Sbjct: 220 ---LNIPFNKILLDVPCSGEGLIPEDPSRKTKTTIEDLK--IFFQNQLEL--IDIAYNIL 272
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
+ GG +VYS+CSI ENEAV++Y ++ K G F +F SL
Sbjct: 273 EPGGILVYSSCSIAPEENEAVVNYIIENYGAKTDKIYGYPATSGITEFNGIKFDESLRNC 332
Query: 363 RRFYPHVHNMDGFFVAKLKK 382
RFYPH +GFFV K+ K
Sbjct: 333 IRFYPHKSGTEGFFVCKIIK 352
>gi|70606519|ref|YP_255389.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639]
gi|68567167|gb|AAY80096.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639]
Length = 334
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 169/318 (53%), Gaps = 10/318 (3%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
L + YG+ ++++ + MF +E E + S P +R N L T + L +
Sbjct: 23 LSNKYGFLDYMVERYIHMFDSLEDAESFMRSCTVPLEESIRCNDLVTTCSTMEYRLEEKN 82
Query: 127 VNLDPLSKWSKVGLVVYD--SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L+ + +W G V ++ +GAT EY+ G+Y +Q +S +P L P E++ V+D
Sbjct: 83 FELEKV-QWLPHGYRVIKKPNKPSLGATVEYLNGYYYIQGLASMVPAYVLNPHEEDTVLD 141
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAAAPGGKTT +A LMKN GLI A E R +SL +N++RM N I+ D + L K
Sbjct: 142 MAAAPGGKTTQLAQLMKNKGLIIATEKSRRRARSLISNINRMHARNIILIRSDASTLSKT 201
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
++LLDAPCSG G+I KD + SL D++ S Q L+ D++D N
Sbjct: 202 --RIKFSKILLDAPCSGEGIIFKDTERRKKTSLSDLKNFSLTQMGLLTIGYDLLDKN--- 256
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
G +VYSTCSI E+E V++Y +++ + + +G FR +F + R
Sbjct: 257 -GILVYSTCSIAPEEDELVVNYGIEELGFRAIKISGYPADKGISEFRGVKFSHDVNNCIR 315
Query: 365 FYPHVHNMDGFFVAKLKK 382
FYPH H +GFFV L+K
Sbjct: 316 FYPHEHGTEGFFVCALQK 333
>gi|449066731|ref|YP_007433813.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius N8]
gi|449069005|ref|YP_007436086.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius Ron12/I]
gi|449035239|gb|AGE70665.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius N8]
gi|449037513|gb|AGE72938.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius Ron12/I]
Length = 338
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 169/318 (53%), Gaps = 10/318 (3%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRG 126
L + YG+ ++++ + MF +E E + S P +R N L T + L +
Sbjct: 27 LSNKYGFLDYMVERYIHMFDSLEDAESFMRSCTVPLEESIRCNDLVTTCSTMEYRLEEKN 86
Query: 127 VNLDPLSKWSKVGLVVYD--SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L+ + +W G V ++ +GAT EY+ G+Y +Q +S +P L P E++ V+D
Sbjct: 87 FELEKV-QWLPHGYRVIKKPNKPSLGATVEYLNGYYYIQGLASMVPAYVLNPHEEDTVLD 145
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
MAAAPGGKTT +A LMKN GLI A E R +SL +N++RM N I+ D + L K
Sbjct: 146 MAAAPGGKTTQLAQLMKNKGLIIATEKSRRRARSLISNINRMHARNIILIRSDASTLSKT 205
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
++LLDAPCSG G+I KD + SL D++ S Q L+ D++D N
Sbjct: 206 --RIKFSKILLDAPCSGEGIIFKDTERRKKTSLSDLKNFSLTQMGLLTIGYDLLDKN--- 260
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
G +VYSTCSI E+E V++Y +++ + + +G FR +F + R
Sbjct: 261 -GILVYSTCSIAPEEDELVVNYGIEELGFRAIKISGYPADKGISEFRGVKFSHDVNNCIR 319
Query: 365 FYPHVHNMDGFFVAKLKK 382
FYPH H +GFFV L+K
Sbjct: 320 FYPHEHGTEGFFVCALQK 337
>gi|262275788|ref|ZP_06053597.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae
CIP 101886]
gi|262219596|gb|EEY70912.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae
CIP 101886]
Length = 476
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 169/314 (53%), Gaps = 30/314 (9%)
Query: 84 EMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV 142
++ PP + + + IE+ ++P LR NTLK D + +G L P+ W G +
Sbjct: 17 QILPPHLSMNDFIEACKRPLRRSLRVNTLKISVADFLERANEKGWKLSPVP-WCDTGFWL 75
Query: 143 --YDSQ-VPIGATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIA 197
YD VP+G T E+MAG + +Q ASS LPV AL E E V+DMAAAPG KTT IA
Sbjct: 76 DDYDEDTVPLGNTAEHMAGLFYIQEASSMLPVTALLQNTTELEYVLDMAAAPGSKTTQIA 135
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRV 253
A + N G++ ANE ASR+K L ANL R GV NT + NYD G LP++ D V
Sbjct: 136 AALNNNGVLVANEYSASRVKVLHANLLRCGVLNTALTNYDGRVFGGWLPEMF-----DAV 190
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSG G I KD ++ SLE +Q+ + Q+ LI +A + K GG +VYSTC
Sbjct: 191 LLDAPCSGEGTIRKDADAFSNWSLESVQEIAQTQRDLITSAFHAL----KPGGVMVYSTC 246
Query: 314 SIMVTENEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
++ EN+ + Y + V+ P F E H +P + +
Sbjct: 247 TLNHDENQHICHYIKETFGDAVEFEPLNNLFEGAEAACTDEGFLH--------VFPQIFD 298
Query: 372 MDGFFVAKLKKMSN 385
+GFFVAKL+K ++
Sbjct: 299 SEGFFVAKLRKTAS 312
>gi|156936862|ref|YP_001434658.1| ribosomal RNA methyltransferase NOP2 [Ignicoccus hospitalis KIN4/I]
gi|156565846|gb|ABU81251.1| ribosomal RNA methyltransferase NOP2 [Ignicoccus hospitalis KIN4/I]
Length = 326
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 168/316 (53%), Gaps = 11/316 (3%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L YGY +++ EM + + L+E+FE P +R N LK L + L +RG
Sbjct: 22 LARKYGYLPYMVRRYREML--GDPLPLLEAFEVPPKPTIRCNFLKVGCGKLKERLESRGF 79
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
L + W V + +TPE++ G++ +Q +S LP + L P+ E V D+A+
Sbjct: 80 VLKQVL-WCPHAYEVLREPFSLSSTPEHLDGWFYIQDKASTLPPLVLGPKPGETVADLAS 138
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGK T++A LM N+G + E + R K+L +NL RM + N V D K
Sbjct: 139 APGGKATHLAQLMGNSGRLILIERRRDRAKALMSNLERMEILNANVIIDDAYNASKY--- 195
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
D+ LLDAPC+G GVI++D S K S+ ED+ +Q L+ A+D + K GG
Sbjct: 196 GPFDKALLDAPCTGEGVIARDPSRKRSRRPEDLALMHKVQAMLLNRALDSL----KPGGE 251
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
+VYSTCSI ENE VI+ LK RD V G + G G + F P K RR +P
Sbjct: 252 LVYSTCSIAPEENELVIETILKTRDDVEVLDGGEAGSPGIEEYLGWEF-PFAYKCRRLWP 310
Query: 368 HVHNMDGFFVAKLKKM 383
HVH +GFFV KL+K+
Sbjct: 311 HVHGSEGFFVCKLRKL 326
>gi|349802993|gb|AEQ16969.1| hypothetical protein [Pipa carvalhoi]
Length = 138
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 110/130 (84%), Gaps = 8/130 (6%)
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KDE KT+KS++DIQ+C+++QK+LIL+AID VDA S +GG+++Y TCSI V ENE V+DY
Sbjct: 17 KDE--KTNKSVQDIQRCAHIQKELILSAIDAVDAQSSTGGFVLYCTCSITVEENECVVDY 74
Query: 327 ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
ALKKR+VKLVP GL FG++GFVRF+E RFHPSL++TRRFYPH HNMDGFF+AKL+K SN
Sbjct: 75 ALKKRNVKLVPTGL-FGKEGFVRFKERRFHPSLKQTRRFYPHTHNMDGFFIAKLRKSSN- 132
Query: 387 KKTSAGPQPS 396
A P+P+
Sbjct: 133 ----AIPKPN 138
>gi|15668197|ref|NP_246989.1| proliferating cell nuclear antigen [Methanocaldococcus jannaschii
DSM 2661]
gi|2500953|sp|Q60343.1|TRM4_METJA RecName: Full=tRNA (cytosine(48)-C(5))-methyltransferase; AltName:
Full=aTrm4; AltName: Full=tRNA
(cytosine-5-)-methyltransferase Trm4
gi|299856663|pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
gi|299856664|pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
gi|299856676|pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
gi|1592257|gb|AAB98007.1| proliferating-cell nucleolar antigen, FMU/NOL1/NOP2 family
[Methanocaldococcus jannaschii DSM 2661]
Length = 274
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 168/287 (58%), Gaps = 34/287 (11%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L N+GV L+ + V S IG+TPEY+ G+YM QS
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+ +R K+L +N++R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + K+ +V S EDI+ C
Sbjct: 131 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYC 186
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC---- 338
S QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR DV+L+
Sbjct: 187 SLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANE 242
Query: 339 --GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
G++ ++G+++ F P+ + FF+AKL+K+
Sbjct: 243 FKGINI-KEGYIKGTLRVFPPN--------------EPFFIAKLRKI 274
>gi|312881594|ref|ZP_07741372.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309370657|gb|EFP98131.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 474
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 173/317 (54%), Gaps = 31/317 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK+ D + +G +++ + W K G V + Q P+G
Sbjct: 27 DFISACQRPLRKSIRVNTLKSSISDFMTLAKAKGWHIEQI-PWCKDGFWVDLDEEQTPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
+T E+++G + +Q ASS +PV AL + V+DMAAAPG KTT IAALM N G++ A
Sbjct: 86 STAEHLSGLFYIQEASSMIPVSALFSDSTKLQSVLDMAAAPGSKTTQIAALMGNKGVLIA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K+L AN+ R G+ NT + N+DG L D VL+DAPCSG G + KD
Sbjct: 146 NEYSASRVKALHANIERCGIRNTALSNFDGEVFGSWLP-EAFDAVLIDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
+S + SL+ IQ + QK+LI +A + K GG +VYSTC++ + EN+ V + L
Sbjct: 205 DSALKNWSLKSIQSIADTQKKLIESAFHAL----KPGGTLVYSTCTLSLEENQFVCRH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR-----RFYPHVHNMDGFFVAKLKKM 383
K + F H F + E +P V++ +GFFVAKLKK+
Sbjct: 260 KDK----------FADSVEFESLSHLFPGASESVTDEGFLHVFPQVYDSEGFFVAKLKKV 309
Query: 384 -----SNSKKTSAGPQP 395
S+S KT G P
Sbjct: 310 ASIEKSDSPKTKLGTFP 326
>gi|421351249|ref|ZP_15801614.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-25]
gi|395951694|gb|EJH62308.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-25]
Length = 473
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQIAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>gi|423953606|ref|ZP_17734614.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HE-40]
gi|423983053|ref|ZP_17738165.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HE-46]
gi|408659436|gb|EKL30486.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HE-40]
gi|408664984|gb|EKL35805.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HE-46]
Length = 473
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKSLIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSCEENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>gi|307131294|ref|YP_003883310.1| ribosomal RNA small subunit methyltransferase F [Dickeya dadantii
3937]
gi|306528823|gb|ADM98753.1| Ribosomal RNA small subunit methyltransferase F [Dickeya dadantii
3937]
Length = 482
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 174/326 (53%), Gaps = 27/326 (8%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
+FL M + + I++ ++P +R NTLK D ++ G L+ + W
Sbjct: 12 DFLTAMQAIMPAHLSMDAFIDACQRPLRRSIRINTLKISVADFLALVAPYGWELEAV-PW 70
Query: 136 SKVGLVVYDSQ---VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
G + ++ + +G E++AG + +Q ASS LPV AL ERV+DMAAAPG
Sbjct: 71 CDEGFWLLNADEEAMRLGNALEHLAGLFYIQEASSMLPVSALFMGDDAPERVLDMAAAPG 130
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLG 246
KTT IAA + N GLI ANE ASR+K L ANLHR GV+NT + ++D GN LP+
Sbjct: 131 SKTTQIAARLNNQGLIVANEYSASRVKVLHANLHRCGVSNTALTHFDGRVFGNALPE--- 187
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
T D +LLDAPCSG GV+ KD + + SLE I + Q++LIL+A + K GG
Sbjct: 188 --TFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRELILSAFHAL----KPGG 241
Query: 307 YIVYSTCSIMVTENEAVIDYALKK-RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
++YSTC++ EN+ V + +++ D V D Q E F
Sbjct: 242 VLIYSTCTLNHQENQHVCRWLMQQFPDACEVESLKDLFPQAHHALTEDGF-------LHV 294
Query: 366 YPHVHNMDGFFVAKLKKMSNSKKTSA 391
+P +++ +GFFVA+L+K + +A
Sbjct: 295 FPQIYDSEGFFVARLRKTAGVPPLAA 320
>gi|153801173|ref|ZP_01955759.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-3]
gi|124123293|gb|EAY42036.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-3]
Length = 503
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 171/313 (54%), Gaps = 17/313 (5%)
Query: 78 LIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS 136
I ++ ++ P P +L + I + ++P LR NTLK + + L P+ W
Sbjct: 41 FIASMAKILPDPTQLADFIAACQRPLRKSLRVNTLKISVAEFCQRAAEKEWQLTPV-PWC 99
Query: 137 KVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGK 192
+ G + +S VP+G T E+MAG + +Q ASS +PV AL E + V+DMAAAPG K
Sbjct: 100 ENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMIPVSALFMGDAEYDCVLDMAAAPGSK 159
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
TT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L D
Sbjct: 160 TTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDA 218
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VYST
Sbjct: 219 VLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYST 274
Query: 313 CSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
C++ EN+ V + LK+ V F G + F + E +P +++
Sbjct: 275 CTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDC 328
Query: 373 DGFFVAKLKKMSN 385
+GFFVAK++K+++
Sbjct: 329 EGFFVAKIRKLAS 341
>gi|384424579|ref|YP_005633937.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
LMA3984-4]
gi|327484132|gb|AEA78539.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
LMA3984-4]
Length = 473
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDTVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQIAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>gi|229520538|ref|ZP_04409962.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TM
11079-80]
gi|229342362|gb|EEO07356.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TM
11079-80]
Length = 492
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 28 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 86
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 87 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 146
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 147 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 205
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 206 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKSLIESAFQAL----KVGGTLVY 261
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 262 STCTLSCEENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 315
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 316 DCEGFFVAKIRKLAS 330
>gi|417824795|ref|ZP_12471383.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE48]
gi|340046280|gb|EGR07210.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE48]
Length = 473
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 169/318 (53%), Gaps = 23/318 (7%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKSLIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
STC++ EN+ V + LK+ V G F E H +P
Sbjct: 243 STCTLSCEENQQVC-WHLKQTYGDAVSFESLGNLFEYASLALTEEGFLH--------IFP 293
Query: 368 HVHNMDGFFVAKLKKMSN 385
+++ +GFFVAK++K+++
Sbjct: 294 QMYDCEGFFVAKIRKLAS 311
>gi|419837289|ref|ZP_14360727.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-46B1]
gi|421354226|ref|ZP_15804558.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-45]
gi|423735235|ref|ZP_17708434.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-41B1]
gi|395953351|gb|EJH63964.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-45]
gi|408630078|gb|EKL02718.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-41B1]
gi|408855837|gb|EKL95532.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-46B1]
Length = 473
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>gi|429885734|ref|ZP_19367312.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
PS15]
gi|429227427|gb|EKY33455.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
PS15]
Length = 473
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>gi|297579072|ref|ZP_06941000.1| NOL1/NOP2/sun family protein [Vibrio cholerae RC385]
gi|297536666|gb|EFH75499.1| NOL1/NOP2/sun family protein [Vibrio cholerae RC385]
Length = 503
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P LR NTLK + + L P+
Sbjct: 39 EPFIASMAKILPDPTQLADFIAACQRPLRKSLRVNTLKISVAEFCQRAAEKEWQLTPV-P 97
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 98 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 157
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 158 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 216
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 217 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 272
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 273 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 326
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 327 DCEGFFVAKIRKLAS 341
>gi|421497807|ref|ZP_15944955.1| rRNA -methyltransferase RsmF [Aeromonas media WS]
gi|407183130|gb|EKE57039.1| rRNA -methyltransferase RsmF [Aeromonas media WS]
Length = 458
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 165/316 (52%), Gaps = 38/316 (12%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIGA 151
+ S +P +R NTLK + + G LDP+ W G + D VP+G
Sbjct: 10 FVASCRQPLRRSIRVNTLKITVSEFVARMAPLGWQLDPV-PWCAAGFWLTRSDESVPLGN 68
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLIY 207
T E++ G + +Q ASS LPVMAL E+ R ++D AAAPG KTT IAALM+N G++
Sbjct: 69 TAEHLCGLFYIQEASSMLPVMALFASEQTRGDGMLLDAAAAPGSKTTQIAALMENRGMLI 128
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGTG 263
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG G
Sbjct: 129 ANEFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGEG 183
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
+ KDE + SLE I + + +Q+ L+ +A + K GG +VYSTC++ + EN+AV
Sbjct: 184 TVRKDEDALRNWSLESIDEIAAVQRGLLESAFHAL----KPGGVLVYSTCTLSLQENQAV 239
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFFV 377
+K FG F P EK +P + + +GFFV
Sbjct: 240 CQSLQEK-----------FG-DAFSFDSLADLFPGAEKACTPEGYLHVWPQIFDSEGFFV 287
Query: 378 AKLKKMSNSKKTSAGP 393
A+L+K + T P
Sbjct: 288 ARLRKHHSVPNTMFKP 303
>gi|379741356|ref|YP_005333325.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
IEC224]
gi|418338156|ref|ZP_12947050.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-23A1]
gi|418346067|ref|ZP_12950834.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-28A1]
gi|421317655|ref|ZP_15768224.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1032(5)]
gi|421325085|ref|ZP_15775610.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1041(14)]
gi|421332637|ref|ZP_15783115.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1046(19)]
gi|422891709|ref|ZP_16934076.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-40A1]
gi|422902815|ref|ZP_16937801.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-48A1]
gi|422906696|ref|ZP_16941513.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-70A1]
gi|422913552|ref|ZP_16948063.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HFU-02]
gi|422925756|ref|ZP_16958775.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-38A1]
gi|423145078|ref|ZP_17132676.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-19A1]
gi|423149754|ref|ZP_17137072.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-21A1]
gi|423153570|ref|ZP_17140760.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-22A1]
gi|423156657|ref|ZP_17143754.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-32A1]
gi|423731064|ref|ZP_17704371.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-17A1]
gi|423758236|ref|ZP_17712426.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-50A2]
gi|423929447|ref|ZP_17731102.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-77A1]
gi|424002509|ref|ZP_17745587.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-17A2]
gi|424006298|ref|ZP_17749271.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-37A1]
gi|424024275|ref|ZP_17763929.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-62B1]
gi|424586432|ref|ZP_18026013.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1030(3)]
gi|424595076|ref|ZP_18034401.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1040(13)]
gi|424598998|ref|ZP_18038181.1| ribosomal RNA small subunit methyltransferase F [Vibrio Cholerae
CP1044(17)]
gi|424606677|ref|ZP_18045625.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1050(23)]
gi|424610505|ref|ZP_18049348.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-39A1]
gi|424617298|ref|ZP_18055974.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-42A1]
gi|424622075|ref|ZP_18060587.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-47A1]
gi|424645043|ref|ZP_18082783.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-56A2]
gi|424652808|ref|ZP_18090193.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-57A2]
gi|440709746|ref|ZP_20890398.1| yebU protein [Vibrio cholerae 4260B]
gi|443503876|ref|ZP_21070838.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-64A1]
gi|443507771|ref|ZP_21074540.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-65A1]
gi|443511616|ref|ZP_21078258.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-67A1]
gi|443515169|ref|ZP_21081686.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-68A1]
gi|443518962|ref|ZP_21085364.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-71A1]
gi|443523856|ref|ZP_21090073.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-72A2]
gi|443538807|ref|ZP_21104661.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-81A1]
gi|449056045|ref|ZP_21734713.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae O1
str. Inaba G4222]
gi|146325709|sp|Q9KRY1.2|RSMF_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096823|sp|C3LMI5.2|RSMF_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|341622575|gb|EGS48228.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-48A1]
gi|341622743|gb|EGS48356.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-70A1]
gi|341623213|gb|EGS48777.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-40A1]
gi|341638000|gb|EGS62656.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HFU-02]
gi|341646998|gb|EGS71096.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-38A1]
gi|356418868|gb|EHH72440.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-21A1]
gi|356423749|gb|EHH77179.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-19A1]
gi|356429585|gb|EHH82800.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-22A1]
gi|356429798|gb|EHH83007.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-23A1]
gi|356434675|gb|EHH87850.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-28A1]
gi|356440572|gb|EHH93512.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-32A1]
gi|378794866|gb|AFC58337.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
IEC224]
gi|395918073|gb|EJH28899.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1032(5)]
gi|395918146|gb|EJH28971.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1041(14)]
gi|395929244|gb|EJH39994.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1046(19)]
gi|395959741|gb|EJH70157.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-56A2]
gi|395960393|gb|EJH70762.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-57A2]
gi|395963451|gb|EJH73717.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-42A1]
gi|395971542|gb|EJH81201.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-47A1]
gi|395974613|gb|EJH84135.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1030(3)]
gi|408007772|gb|EKG45815.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-39A1]
gi|408033409|gb|EKG69959.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1040(13)]
gi|408042851|gb|EKG78883.1| ribosomal RNA small subunit methyltransferase F [Vibrio Cholerae
CP1044(17)]
gi|408043904|gb|EKG79864.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1050(23)]
gi|408624907|gb|EKK97840.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-17A1]
gi|408637088|gb|EKL09180.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-50A2]
gi|408654919|gb|EKL26045.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-77A1]
gi|408846392|gb|EKL86498.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-37A1]
gi|408846641|gb|EKL86734.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-17A2]
gi|408871116|gb|EKM10374.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-62B1]
gi|439974622|gb|ELP50785.1| yebU protein [Vibrio cholerae 4260B]
gi|443431664|gb|ELS74212.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-64A1]
gi|443435590|gb|ELS81728.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-65A1]
gi|443439331|gb|ELS89042.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-67A1]
gi|443443520|gb|ELS96816.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-68A1]
gi|443447376|gb|ELT04026.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-71A1]
gi|443450122|gb|ELT10409.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-72A2]
gi|443464907|gb|ELT39567.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-81A1]
gi|448265084|gb|EMB02321.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae O1
str. Inaba G4222]
Length = 473
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>gi|333910084|ref|YP_004483817.1| RNA methylase [Methanotorris igneus Kol 5]
gi|333750673|gb|AEF95752.1| RNA methylase, NOL1/NOP2/sun family [Methanotorris igneus Kol 5]
Length = 264
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/283 (43%), Positives = 166/283 (58%), Gaps = 31/283 (10%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L + L N+GV L + V +S +GATPEY+ G+Y +QS
Sbjct: 6 IRVNTLKINPETLKNRLENKGVMLK--ETFLPYAFEVLESPFSVGATPEYLFGYYFVQSI 63
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P + + V+DM AAPGGKTT++A LM N G I A E+K+SR+KSL AN++R
Sbjct: 64 SSMIPPIVLNPSKDDLVLDMCAAPGGKTTHLAQLMNNEGAIIAVEIKSSRMKSLKANINR 123
Query: 226 MGVTNTIVCNYDGNELPKVLGLN----TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ 281
MG+ N I+ N + VL L D++LLDAPCSG + KD+S +K EDI
Sbjct: 124 MGIANVIMLNMN------VLHLKEKDLKFDKILLDAPCSGN--VIKDKSRSVTK--EDII 173
Query: 282 KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL 340
CS QK+LI A ID++ K GG +VYSTCS ENE VI+Y L KR DV+L+P
Sbjct: 174 YCSNRQKELIDAGIDLL----KEGGVLVYSTCSAEEEENEGVIEYILNKRDDVELLPIEN 229
Query: 341 DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+F +G + +E T R P + FF+AKL K+
Sbjct: 230 NF--KGI-----NVIEGGIEGTLRVIPP---NEPFFIAKLMKI 262
>gi|260772859|ref|ZP_05881775.1| ribosomal RNA small subunit methyltransferase F [Vibrio
metschnikovii CIP 69.14]
gi|260611998|gb|EEX37201.1| ribosomal RNA small subunit methyltransferase F [Vibrio
metschnikovii CIP 69.14]
Length = 473
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 170/322 (52%), Gaps = 31/322 (9%)
Query: 76 EFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
EFL + E+ P + L + I + ++P +R NTLK D ++G L+P+
Sbjct: 10 EFL-ATIAEILPSTLNLNDFIAACQRPLRKSIRVNTLKISVADFQTRAADKGWYLEPI-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK---ERVIDMAAAP 189
W + G + + QVP+G T E+MAG + +Q ASS +PV AL Q E V+DMAAAP
Sbjct: 68 WCESGFWITADEEQVPLGNTAEHMAGLFYIQEASSMMPVSALFMQSGAPFEHVLDMAAAP 127
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT IAALM N G++ ANE ASR+K L AN+ R G+ N+ + N+DG L
Sbjct: 128 GSKTTQIAALMDNQGVLIANEYSASRVKILHANIERCGIRNSALTNFDGQIFGGWLP-EQ 186
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D VLLDAPCSG G + KD + S + + QK LI +A + K GG +V
Sbjct: 187 FDAVLLDAPCSGEGTVRKDPDAMKNWSKASVMSIAQTQKSLIESAFQAL----KVGGVLV 242
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------R 363
YSTC++ EN+ V + LK V F R + PS E+T
Sbjct: 243 YSTCTLSREENQDVC-WHLKHTYGDAVT---------FTRLDQ--LFPSAEQTITEEGFL 290
Query: 364 RFYPHVHNMDGFFVAKLKKMSN 385
+P V++ +GFFVAK+ K ++
Sbjct: 291 HIFPQVYDCEGFFVAKITKQAS 312
>gi|256823370|ref|YP_003147333.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Kangiella koreensis
DSM 16069]
gi|256796909|gb|ACV27565.1| RNA methylase, NOL1/NOP2/sun family [Kangiella koreensis DSM 16069]
Length = 479
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 163/303 (53%), Gaps = 22/303 (7%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQV 147
P L L++ +KP +R N L+ + + + G LDP+ W G + ++
Sbjct: 19 PDALQALLDYSQKPLRKSIRINPLRANKEVVVNEWQQAGYKLDPI-PWCDDGFWIDETYK 77
Query: 148 PI----GATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMK 201
P+ G ++AG + +Q +SS LPV AL A + V+D+AAAPG KTT I+A M
Sbjct: 78 PLADGFGKLLPHLAGQFYIQESSSMLPVSALFAAHPDPTMVLDVAAAPGSKTTQISAAMN 137
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N GL+ ANE+ +SRLK L ANL R GV+NTI+C++DG + + T D +LLDAPC G
Sbjct: 138 NDGLVVANELSSSRLKVLYANLERTGVSNTILCHHDGRQFGEATK-QTFDAILLDAPCGG 196
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
G + KD ++ SL + S LQK+LI++A + + K GG +VYSTC++ EN+
Sbjct: 197 EGTVRKDPEALSNWSLASVLSISELQKELIMSAFNAL----KPGGTLVYSTCTLSKEENQ 252
Query: 322 AVIDYAL--KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
V + L V++ P F V E H YPH+ + +GFFVA
Sbjct: 253 LVCQHLLDTHSNSVEIFPLNALFAGADKVATPEGYLH--------LYPHLFDSEGFFVAC 304
Query: 380 LKK 382
KK
Sbjct: 305 FKK 307
>gi|271500348|ref|YP_003333373.1| NOL1/NOP2/sun family RNA methylase [Dickeya dadantii Ech586]
gi|270343903|gb|ACZ76668.1| RNA methylase, NOL1/NOP2/sun family [Dickeya dadantii Ech586]
Length = 482
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 188/350 (53%), Gaps = 33/350 (9%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
+FL M + + + I++ ++P +R NTLK D ++ G ++ + W
Sbjct: 12 DFLTAMQAIMPAHLSMDDFIDACQRPLRRSIRVNTLKISVPDFLTLVAPYGWEMEAV-PW 70
Query: 136 SKVGLVVYDSQ---VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
G + ++ + +G E+++G + +Q ASS LPV AL ERV+DMAAAPG
Sbjct: 71 CHDGFWLLNADEEAMRLGNALEHLSGLFYIQEASSMLPVSALFMGHDTPERVLDMAAAPG 130
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLG 246
KTT IAA + N GLI ANE ASR+K L ANLHR GV+NT + ++D GN LP+
Sbjct: 131 SKTTQIAAHLNNQGLIVANEYSASRVKVLHANLHRCGVSNTTLTHFDGRVFGNALPE--- 187
Query: 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
T D +LLDAPCSG GV+ KD + + SLE I + Q+ LIL+A + K GG
Sbjct: 188 --TFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRDLILSAFHAL----KPGG 241
Query: 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL--EKTRR 364
++YSTC++ EN+ V + +++ C ++ + F + H +L E
Sbjct: 242 VLIYSTCTLNHQENQQVCHWLMQQFPGA---CEIESLKDLFP-----QAHQALTDEGFLH 293
Query: 365 FYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKK 414
+P +++ +GFFVA+L+K ++ + P + + P + +SN D +
Sbjct: 294 VFPQIYDSEGFFVARLRKTASVPPLA----PPDYKPGKLPFTPLSNKDAQ 339
>gi|254286435|ref|ZP_04961393.1| NOL1/NOP2/sun family protein [Vibrio cholerae AM-19226]
gi|150423602|gb|EDN15545.1| NOL1/NOP2/sun family protein [Vibrio cholerae AM-19226]
Length = 503
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 170/313 (54%), Gaps = 17/313 (5%)
Query: 78 LIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS 136
I ++ ++ P P +L + I + ++P +R NTLK + + L P+ W
Sbjct: 41 FIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWC 99
Query: 137 KVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGK 192
+ G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG K
Sbjct: 100 ENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSK 159
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
TT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L D
Sbjct: 160 TTQMAALMDNQGVLVANEFSASRVKVLHANIQRCGIRNTALSNFDGCVFGGWLP-ERFDA 218
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VYST
Sbjct: 219 VLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYST 274
Query: 313 CSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
C++ EN+ V + LK+ V F G + F + E +P +++
Sbjct: 275 CTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDC 328
Query: 373 DGFFVAKLKKMSN 385
+GFFVAK++K+++
Sbjct: 329 EGFFVAKIRKLAS 341
>gi|360035396|ref|YP_004937159.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O1
str. 2010EL-1786]
gi|356646550|gb|AET26605.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O1
str. 2010EL-1786]
Length = 492
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 28 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 86
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 87 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 146
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 147 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 205
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 206 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 261
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 262 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 315
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 316 DCEGFFVAKIRKLAS 330
>gi|300711849|ref|YP_003737663.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|448295539|ref|ZP_21485603.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|299125532|gb|ADJ15871.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|445583638|gb|ELY37967.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
Length = 302
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 165/303 (54%), Gaps = 25/303 (8%)
Query: 91 LMELIESF----EKPRPICLRTNTLK-----TRRRDLADVLINRGVNLDPLSKWSKVGLV 141
L++ E+F E+ P +R NT+K T+R A+ + R + +P ++
Sbjct: 10 LVDDFEAFLAACERSLPSVVRVNTIKAGVERTKRALEAEDVGYRDRDWNPT-------VL 62
Query: 142 VYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMK 201
D+ P G T Y G+ Q S LP L+P ERV+D AAPGGKT IAALM
Sbjct: 63 ELDTNKP-GNTWPYFHGWIHGQEEVSSLPATVLSPDPGERVLDACAAPGGKTAQIAALMD 121
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCS 260
+TGL+ AN+ RL +L N R+G+TN V D K +GL+ DRVL+DAPCS
Sbjct: 122 DTGLVVANDNNLGRLSALRFNAERLGLTNVAVTRQDARNFSLKPVGLDAFDRVLVDAPCS 181
Query: 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320
G+I K SL ++ S +QK ++ AI ++ GG +VYSTC+ EN
Sbjct: 182 CEGIIRKRPDTLDEWSLSHVEGVSGVQKGILKRAIQA----TREGGVVVYSTCTFAPEEN 237
Query: 321 EAVIDYALKKRDVKLV--PCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
EAV+D+AL++ D ++V LD R G ++ R+H S+ K RR+YPH ++ GFF A
Sbjct: 238 EAVLDHALEEEDCRVVEFETPLD-SRPGVTEWQGERYHESVAKARRYYPHHNDTGGFFCA 296
Query: 379 KLK 381
KL+
Sbjct: 297 KLE 299
>gi|417820902|ref|ZP_12467516.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE39]
gi|340038533|gb|EGQ99507.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE39]
Length = 459
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P +R NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKSLIESAFQAL----KVGGTLVYSTCTLSCEENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|422307387|ref|ZP_16394546.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
CP1035(8)]
gi|408620806|gb|EKK93811.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
CP1035(8)]
Length = 459
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P +R NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKSLIESAFQAL----KVGGTLVYSTCTLSCEENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|229514909|ref|ZP_04404369.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
TMA 21]
gi|229347614|gb|EEO12573.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
TMA 21]
Length = 459
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P LR NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSLRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYSTCTLSREENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|254226556|ref|ZP_04920138.1| NOL1/NOP2/sun family protein [Vibrio cholerae V51]
gi|125620892|gb|EAZ49244.1| NOL1/NOP2/sun family protein [Vibrio cholerae V51]
Length = 503
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 39 EPFIASMAKILPEPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 97
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 98 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 157
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 158 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 216
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 217 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 272
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 273 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 326
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 327 DCEGFFVAKIRKLAS 341
>gi|153824817|ref|ZP_01977484.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-2]
gi|153830903|ref|ZP_01983570.1| NOL1/NOP2/sun family protein [Vibrio cholerae 623-39]
gi|148873618|gb|EDL71753.1| NOL1/NOP2/sun family protein [Vibrio cholerae 623-39]
gi|149741535|gb|EDM55565.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-2]
Length = 503
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 39 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 97
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 98 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 157
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 158 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 216
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 217 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 272
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 273 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 326
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 327 DCEGFFVAKIRKLAS 341
>gi|15641511|ref|NP_231143.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121587235|ref|ZP_01677009.1| NOL1/NOP2/sun family protein [Vibrio cholerae 2740-80]
gi|121726919|ref|ZP_01680120.1| NOL1/NOP2/sun family protein [Vibrio cholerae V52]
gi|147674343|ref|YP_001217056.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O395]
gi|153822818|ref|ZP_01975485.1| NOL1/NOP2/sun family protein [Vibrio cholerae B33]
gi|227081661|ref|YP_002810212.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
M66-2]
gi|227117967|ref|YP_002819863.1| Sun/nucleolar protein family protein [Vibrio cholerae O395]
gi|254848624|ref|ZP_05237974.1| sun/nucleolar protein family protein [Vibrio cholerae MO10]
gi|298498410|ref|ZP_07008217.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MAK
757]
gi|9656005|gb|AAF94657.1| Sun/nucleolar protein family protein [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121548578|gb|EAX58632.1| NOL1/NOP2/sun family protein [Vibrio cholerae 2740-80]
gi|121630681|gb|EAX63068.1| NOL1/NOP2/sun family protein [Vibrio cholerae V52]
gi|126519677|gb|EAZ76900.1| NOL1/NOP2/sun family protein [Vibrio cholerae B33]
gi|146316226|gb|ABQ20765.1| NOL1/NOP2/sun family protein [Vibrio cholerae O395]
gi|227009549|gb|ACP05761.1| Sun/nucleolar protein family protein [Vibrio cholerae M66-2]
gi|227013417|gb|ACP09627.1| Sun/nucleolar protein family protein [Vibrio cholerae O395]
gi|254844329|gb|EET22743.1| sun/nucleolar protein family protein [Vibrio cholerae MO10]
gi|297542743|gb|EFH78793.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MAK
757]
Length = 503
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 39 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 97
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 98 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 157
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 158 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 216
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 217 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 272
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 273 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 326
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 327 DCEGFFVAKIRKLAS 341
>gi|152970898|ref|YP_001336007.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|365137632|ref|ZP_09344346.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
4_1_44FAA]
gi|425076077|ref|ZP_18479180.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082182|ref|ZP_18485279.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425086710|ref|ZP_18489803.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425092225|ref|ZP_18495310.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|150955747|gb|ABR77777.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|363655943|gb|EHL94730.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
4_1_44FAA]
gi|405593581|gb|EKB67022.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405600434|gb|EKB73599.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405603434|gb|EKB76555.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405612200|gb|EKB84958.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
Length = 462
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 166/299 (55%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 13 DFIAACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL ++ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+ K
Sbjct: 132 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++LI +A + + GG +VYSTC++ EN++VI++
Sbjct: 191 DADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVIEWL 246
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 247 LSRYPQAVEILPLGELFPGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 297
>gi|330829687|ref|YP_004392639.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
B565]
gi|328804823|gb|AEB50022.1| Ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
B565]
Length = 476
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 166/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ + S +P +R NTLK D ++ G LDP+ W G + D VP+G
Sbjct: 27 DFVASCRRPLRRSIRVNTLKIAVSDFVALMEPLGWQLDPV-PWCDTGFWLTRSDETVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPVMAL +K + ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVMALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSEQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V L K L F + F + E +P + + +GFFVA+L+K
Sbjct: 257 VCQSLLDK-----FGDALSFDSLADL-FPHAEQACTSEGYLHVWPQIFDSEGFFVARLRK 310
Query: 383 MSNSKKTSAGP 393
+ T P
Sbjct: 311 HHSVPNTMFKP 321
>gi|238895411|ref|YP_002920146.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|330001320|ref|ZP_08303939.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella sp. MS
92-3]
gi|378979526|ref|YP_005227667.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386035488|ref|YP_005955401.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
KCTC 2242]
gi|402780138|ref|YP_006635684.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|419763679|ref|ZP_14289922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|419973891|ref|ZP_14489313.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|419979283|ref|ZP_14494575.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|419985187|ref|ZP_14500329.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|419990513|ref|ZP_14505484.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|419997893|ref|ZP_14512686.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|420002726|ref|ZP_14517376.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|420009310|ref|ZP_14523794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|420014847|ref|ZP_14529151.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|420020016|ref|ZP_14534206.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|420025700|ref|ZP_14539707.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|420030420|ref|ZP_14544246.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|420036418|ref|ZP_14550078.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|420043047|ref|ZP_14556537.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|420048957|ref|ZP_14562268.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|420053840|ref|ZP_14567016.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|420059350|ref|ZP_14572358.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|420065937|ref|ZP_14578740.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|420073547|ref|ZP_14586171.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|420076479|ref|ZP_14588950.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|420082046|ref|ZP_14594348.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|421910062|ref|ZP_16339855.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421919025|ref|ZP_16348535.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424831280|ref|ZP_18256008.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424932783|ref|ZP_18351155.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|428148288|ref|ZP_18996174.1| Ribosomal RNA small subunit methyltransferase F ## SSU rRNA m5C1407
[Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428931367|ref|ZP_19004964.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
JHCK1]
gi|428937898|ref|ZP_19011032.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
VA360]
gi|449058568|ref|ZP_21736687.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
hvKP1]
gi|257096809|sp|A6TB06.2|RSMF_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|238547728|dbj|BAH64079.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328537743|gb|EGF63946.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella sp. MS
92-3]
gi|339762616|gb|AEJ98836.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
KCTC 2242]
gi|364518937|gb|AEW62065.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397347138|gb|EJJ40247.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|397349231|gb|EJJ42326.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|397352235|gb|EJJ45315.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|397361902|gb|EJJ54559.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|397366526|gb|EJJ59142.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|397370750|gb|EJJ63314.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|397377367|gb|EJJ69601.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|397381763|gb|EJJ73931.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|397388406|gb|EJJ80384.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|397396637|gb|EJJ88324.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|397401676|gb|EJJ93295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397406740|gb|EJJ98151.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|397414369|gb|EJK05569.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|397414861|gb|EJK06053.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|397423577|gb|EJK14501.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|397430744|gb|EJK21432.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|397435767|gb|EJK26375.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|397437738|gb|EJK28286.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|397447185|gb|EJK37385.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|397452574|gb|EJK42642.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|397743608|gb|EJK90823.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|402541048|gb|AFQ65197.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|407806970|gb|EKF78221.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|410115957|emb|CCM82480.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410118664|emb|CCM91160.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414708714|emb|CCN30418.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426306592|gb|EKV68692.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
VA360]
gi|426308125|gb|EKV70194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
JHCK1]
gi|427541811|emb|CCM92312.1| Ribosomal RNA small subunit methyltransferase F ## SSU rRNA m5C1407
[Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448875371|gb|EMB10391.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
hvKP1]
Length = 477
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 166/299 (55%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL ++ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++LI +A + + GG +VYSTC++ EN++VI++
Sbjct: 206 DADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVIEWL 261
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 262 LSRYPQAVEILPLGELFPGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
>gi|422922786|ref|ZP_16955961.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
BJG-01]
gi|341644866|gb|EGS69030.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
BJG-01]
Length = 459
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 165/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P LR NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSLRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMRNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYSTCTLSREENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|229529456|ref|ZP_04418846.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
12129(1)]
gi|229333230|gb|EEN98716.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
12129(1)]
Length = 459
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P +R NTLK + + + L P+ W G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSIRVNTLKISVAEFSQRAAEKEWQLTPV-PWCDNGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT IAALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDTVLDMAAAPGSKTTQIAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYSTCTLSREENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|406677066|ref|ZP_11084251.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AMC35]
gi|404625380|gb|EKB22197.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AMC35]
Length = 476
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 164/311 (52%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK D ++ G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKIAVSDFVALMQPLGWQLDPV-PWCDTGFWLTRSDETVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL +K + ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSEQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V L K L L E P E +P + + +GFFVA+L+K
Sbjct: 257 VCQSLLDKFGDALSFDSL----ADLFPHAEQACTP--EGYLHVWPQIFDSEGFFVARLRK 310
Query: 383 MSNSKKTSAGP 393
+ T P
Sbjct: 311 HHSVPNTMFKP 321
>gi|334704971|ref|ZP_08520837.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas caviae
Ae398]
Length = 488
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 170/329 (51%), Gaps = 39/329 (11%)
Query: 82 LVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGL 140
+ E P ME + S +P +R NTLK + + G LDP+ W + G
Sbjct: 27 IAEFMPSHLSMEAFVASCRQPLRRSIRVNTLKITVSEFVARMAPLGWQLDPV-PWCETGF 85
Query: 141 VVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTT 194
+ D VP+G T E++ G + +Q ASS LPV AL E+ R ++D AAAPG KTT
Sbjct: 86 WLTRSDESVPLGNTAEHLCGLFYIQEASSMLPVTALFASEQTRGDGMLLDAAAAPGSKTT 145
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTV 250
IAALM+N G++ ANE +SRLK L+AN+ R GVTN + ++D G LP+ T
Sbjct: 146 QIAALMENRGMLIANEFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TF 200
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D +LLDAPCSG G + KDE + SLE I + + +Q+ L+ +A + K GG +VY
Sbjct: 201 DAILLDAPCSGEGTVRKDEDALRNWSLESIDEIAAVQRGLLESAFHAL----KPGGVLVY 256
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RR 364
STC++ + EN+AV +K FG F P EK
Sbjct: 257 STCTLSLQENQAVCQSLQEK-----------FG-DAFSFDSLADLFPGAEKACTPEGYLH 304
Query: 365 FYPHVHNMDGFFVAKLKKMSNSKKTSAGP 393
+P + + +GFFVA+L+K + T P
Sbjct: 305 VWPQIFDSEGFFVARLRKHHSVPNTMFKP 333
>gi|288934704|ref|YP_003438763.1| RNA methylase, NOL1/NOP2/sun family [Klebsiella variicola At-22]
gi|288889413|gb|ADC57731.1| RNA methylase, NOL1/NOP2/sun family [Klebsiella variicola At-22]
Length = 477
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 166/300 (55%), Gaps = 23/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W + G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALA---PQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
G+T E+++G + +Q ASS LPV AL PQ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNPQ-PERVMDVAAAPGSKTTQIAARMGNAGGI 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVR 204
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + S E + Q++LI +A + + GG +VYSTC++ EN++V+ +
Sbjct: 205 KDADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVVQW 260
Query: 327 ALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 261 LLSRYPQAVEILPLGDLFSGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
>gi|424659294|ref|ZP_18096544.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-16]
gi|408052702|gb|EKG87729.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-16]
Length = 459
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P +R NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYSTCTLSREENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|422910580|ref|ZP_16945215.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-09]
gi|341633218|gb|EGS58044.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-09]
Length = 459
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P +R NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYSTCTLSREENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|229523586|ref|ZP_04412991.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
bv. albensis VL426]
gi|229337167|gb|EEO02184.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
bv. albensis VL426]
Length = 459
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P +R NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYSTCTLSREENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|283785573|ref|YP_003365438.1| hypothetical protein ROD_18751 [Citrobacter rodentium ICC168]
gi|282949027|emb|CBG88630.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 479
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 170/304 (55%), Gaps = 29/304 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G +L P+ W G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLALTASYGWSLTPV-PWCAEGFWIAREDEETLPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL AP ERV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAP---ERVMDVAAAPGSKTTQIAARMGNRG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEYSASRVKVLHANISRCGIGNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + + S+E Q+ + Q++LI +A + + GG +VYSTC++ ENE+V+
Sbjct: 203 VRKDPNALKNWSVESNQEIAATQRELIDSAFHAL----RPGGVLVYSTCTLNREENESVV 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F + + E H +P +++ +GFFVA+L+
Sbjct: 259 HW-LKETYPDAVEFMPLGDLFAQASLAQTAEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSN 385
K ++
Sbjct: 310 KTAS 313
>gi|163752559|ref|ZP_02159743.1| NOL1/NOP2/sun family protein [Shewanella benthica KT99]
gi|161327555|gb|EDP98755.1| NOL1/NOP2/sun family protein [Shewanella benthica KT99]
Length = 491
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 182/327 (55%), Gaps = 20/327 (6%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I ++ + P + + + ++ +P +R NTLK + +++ +G L+P+
Sbjct: 18 NQDFIDSITQDMPAHLSMDDFVQYSSRPLRASIRVNTLKISSANFIELMQPKGWTLEPIP 77
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAP 189
S + DS+V +G T E++ G + +Q ASS LP AL Q E ++DMAAAP
Sbjct: 78 WCSDGFWISLDSEVQLGNTIEHLQGLFYIQEASSMLPPTALFSQLNETDNATILDMAAAP 137
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT +AALM N+GL+ ANE +SR+K L AN+ RMGV+NT + ++D + L T
Sbjct: 138 GSKTTQLAALMNNSGLLIANEYSSSRVKVLHANVQRMGVSNTALTHFDARVFGEYL-YAT 196
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D +LLDAPCSG G I KD + + SLE + QK LI +A + K+GG +V
Sbjct: 197 FDAILLDAPCSGEGTIRKDPAALKNWSLESSRSIVATQKALIESAFLAL----KTGGILV 252
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFG--RQGFVRFREHRFHPSLEKTRRFYP 367
YSTC++ EN+ V + LK ++ P ++F R F+ + + E +P
Sbjct: 253 YSTCALSRVENQEVCQH-LK----EMYPDAVEFESLRDLFIDADK---ACTEEGFLHVWP 304
Query: 368 HVHNMDGFFVAKLKKMSNSKKTSAGPQ 394
+++ +GFFVAK++K ++ + A P+
Sbjct: 305 QIYDSEGFFVAKIRKTADIDRQVAEPR 331
>gi|258625050|ref|ZP_05719971.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM603]
gi|258582683|gb|EEW07511.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM603]
Length = 473
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 19/316 (6%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P +L + I + ++P +R NTLK D + + L P+
Sbjct: 9 EDFITSMAKILPDSTQLADFIAACQRPLRKSIRVNTLKISVADFCQRVAEKNWQLSPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVIDMAAAPG 190
W + G + +SQVP+G T E+MAG + +Q ASS +PV AL + + V+DMAAAPG
Sbjct: 68 WCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALTNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + S++ I + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPC-GLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STC++ EN+ V + LK+ V LD F + + E +P +
Sbjct: 243 STCTLSREENQEVC-WHLKQTYGDAVSFESLD------NLFEQASLALTEEGFLHIFPQM 295
Query: 370 HNMDGFFVAKLKKMSN 385
++ +GFFVAK++K+++
Sbjct: 296 YDCEGFFVAKIRKLAS 311
>gi|212639278|ref|YP_002315798.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized
domain [Anoxybacillus flavithermus WK1]
gi|212560758|gb|ACJ33813.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized
domain [Anoxybacillus flavithermus WK1]
Length = 457
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 154/283 (54%), Gaps = 12/283 (4%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LR N+LK ++ L+P+ + G Y++Q G P + AG Y +Q
Sbjct: 40 LRINSLKVSPSTFLNI---SPWELEPIP-FCPTGFYYYNAQP--GKHPYHAAGLYYIQEP 93
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
S+ LAP ERV+D+ AAPGGKTT +AALM N G + ANE+ R+K+L+ N+ R
Sbjct: 94 SAMFVAEVLAPSPGERVLDLCAAPGGKTTQLAALMNNEGFLLANEIHPKRVKALSENIER 153
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
+G+TN +V N +L + D++L+DAPCSG G+ KDE SLE +QKC+
Sbjct: 154 LGITNAVVTNETPEKLSETFE-GFFDKILVDAPCSGEGMFRKDEEAIQFWSLEHVQKCAQ 212
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK-RDVKLVPCGLDFGR 344
Q+ ++ A M+ GG +VYSTC+ ENE +ID+ L D++L+P G
Sbjct: 213 TQRHILSCAYKMLS----EGGTLVYSTCTFSPEENEQIIDWFLATYEDMELIPIEKKHGI 268
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
Q V + ++ T R +PH +G FVAK++K ++K
Sbjct: 269 QPGVSHWTNTHRGNIAHTARLWPHHLKGEGHFVAKMRKRGSTK 311
>gi|419830043|ref|ZP_14353528.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-1A2]
gi|419833677|ref|ZP_14357135.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-61A2]
gi|421344475|ref|ZP_15794878.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-43B1]
gi|422917426|ref|ZP_16951746.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-02A1]
gi|423821711|ref|ZP_17716349.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-55C2]
gi|423854839|ref|ZP_17720145.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-59A1]
gi|423882011|ref|ZP_17723743.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-60A1]
gi|423997857|ref|ZP_17741111.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-02C1]
gi|424009579|ref|ZP_17752517.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-44C1]
gi|424016751|ref|ZP_17756583.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-55B2]
gi|424019678|ref|ZP_17759466.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-59B1]
gi|424625029|ref|ZP_18063496.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-50A1]
gi|424629521|ref|ZP_18067812.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-51A1]
gi|424636645|ref|ZP_18074655.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-55A1]
gi|424640559|ref|ZP_18078444.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-56A1]
gi|424648626|ref|ZP_18086291.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-57A1]
gi|443527546|ref|ZP_21093601.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-78A1]
gi|341637686|gb|EGS62362.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-02A1]
gi|395940555|gb|EJH51236.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-43B1]
gi|408013515|gb|EKG51231.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-50A1]
gi|408024173|gb|EKG61299.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-56A1]
gi|408024887|gb|EKG61970.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-55A1]
gi|408033720|gb|EKG70247.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-57A1]
gi|408056255|gb|EKG91146.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-51A1]
gi|408619816|gb|EKK92828.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-1A2]
gi|408635192|gb|EKL07410.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-55C2]
gi|408641665|gb|EKL13436.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-60A1]
gi|408641851|gb|EKL13615.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-59A1]
gi|408649938|gb|EKL21241.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-61A2]
gi|408853051|gb|EKL92864.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-02C1]
gi|408860384|gb|EKM00021.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-55B2]
gi|408864075|gb|EKM03537.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-44C1]
gi|408867746|gb|EKM07100.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-59B1]
gi|443454040|gb|ELT17852.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-78A1]
Length = 459
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P +R NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYSTCTLSREENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|257096821|sp|B8CPH7.2|RSMF_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 474
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 177/333 (53%), Gaps = 30/333 (9%)
Query: 74 YNEFLIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+N+ I ++ + P ME I KP +R NTLK ++ ++ +G + DP+
Sbjct: 4 FNQNFINSIKQDLPSHLCMEDFISYSSKPLRPSIRVNTLKISSKNFIKLMTPKGWHFDPI 63
Query: 133 SKWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK----ERVIDMAA 187
W + G + D +V +G T E++ G + +Q ASS LP AL E+ + V+DMA+
Sbjct: 64 P-WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMAS 122
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APG KTT IAALM N GL+ ANE ASR+K L AN+ RMGV N + ++D + +
Sbjct: 123 APGSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYM-F 181
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
D VLLDAPCSG G I KD + D++ QK LI +A + K+GG
Sbjct: 182 EIFDSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSL----KAGGE 237
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT----- 362
+VYSTC++ EN+ V DY LK+R P ++F P +K+
Sbjct: 238 LVYSTCALSRQENQNVCDY-LKQR----YPDAVEF-------INLSSLFPGADKSCTEEG 285
Query: 363 -RRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQ 394
+P +++ +GFFVAK+KK+S+ ++ P+
Sbjct: 286 FLHVWPQIYDSEGFFVAKIKKVSSIERVLPEPK 318
>gi|153214766|ref|ZP_01949595.1| NOL1/NOP2/sun family protein [Vibrio cholerae 1587]
gi|124115108|gb|EAY33928.1| NOL1/NOP2/sun family protein [Vibrio cholerae 1587]
Length = 503
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 170/315 (53%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 39 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 97
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 98 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 157
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 158 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 216
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 217 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 272
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 273 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 326
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K ++
Sbjct: 327 DCEGFFVAKIRKQAS 341
>gi|229508549|ref|ZP_04398052.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae BX
330286]
gi|229511380|ref|ZP_04400859.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
B33]
gi|229518519|ref|ZP_04407962.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
RC9]
gi|229607954|ref|YP_002878602.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
MJ-1236]
gi|255745056|ref|ZP_05419006.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholera
CIRS 101]
gi|262161657|ref|ZP_06030675.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
INDRE 91/1]
gi|262169535|ref|ZP_06037226.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
RC27]
gi|417813563|ref|ZP_12460216.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-49A2]
gi|417817301|ref|ZP_12463930.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HCUF01]
gi|418334527|ref|ZP_12943448.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-06A1]
gi|418349834|ref|ZP_12954565.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-43A1]
gi|418356151|ref|ZP_12958870.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-61A1]
gi|419826499|ref|ZP_14349999.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
CP1033(6)]
gi|421321295|ref|ZP_15771848.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1038(11)]
gi|421328752|ref|ZP_15779262.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1042(15)]
gi|421336244|ref|ZP_15786706.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1048(21)]
gi|421339237|ref|ZP_15789672.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-20A2]
gi|421347635|ref|ZP_15798013.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-46A1]
gi|423160227|ref|ZP_17147171.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-33A2]
gi|423165029|ref|ZP_17151775.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-48B2]
gi|423893893|ref|ZP_17726707.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-62A1]
gi|424027158|ref|ZP_17766764.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-69A1]
gi|424601723|ref|ZP_18040869.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1047(20)]
gi|424613312|ref|ZP_18052104.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-41A1]
gi|424656630|ref|ZP_18093919.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-81A2]
gi|443531463|ref|ZP_21097477.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-7A1]
gi|443535251|ref|ZP_21101133.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-80A1]
gi|229343208|gb|EEO08183.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
RC9]
gi|229351345|gb|EEO16286.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
B33]
gi|229354503|gb|EEO19426.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae BX
330286]
gi|229370609|gb|ACQ61032.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
MJ-1236]
gi|255737527|gb|EET92922.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholera
CIRS 101]
gi|262021769|gb|EEY40479.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
RC27]
gi|262028389|gb|EEY47044.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
INDRE 91/1]
gi|340036049|gb|EGQ97025.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-49A2]
gi|340037024|gb|EGQ97999.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HCUF01]
gi|356418562|gb|EHH72157.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-06A1]
gi|356444330|gb|EHH97139.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-43A1]
gi|356447786|gb|EHI00573.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-33A2]
gi|356452649|gb|EHI05328.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-61A1]
gi|356452973|gb|EHI05638.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-48B2]
gi|395918289|gb|EJH29113.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1038(11)]
gi|395927286|gb|EJH38049.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1042(15)]
gi|395933255|gb|EJH43995.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1048(21)]
gi|395944185|gb|EJH54859.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-20A2]
gi|395944632|gb|EJH55305.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-46A1]
gi|395976876|gb|EJH86315.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1047(20)]
gi|408014008|gb|EKG51694.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-41A1]
gi|408054673|gb|EKG89637.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-81A2]
gi|408608331|gb|EKK81729.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
CP1033(6)]
gi|408655864|gb|EKL26971.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-62A1]
gi|408879579|gb|EKM18551.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-69A1]
gi|443456853|gb|ELT24250.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-7A1]
gi|443461563|gb|ELT32632.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-80A1]
Length = 459
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
Query: 88 PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DS 145
P +L + I + ++P +R NTLK + + L P+ W + G + +S
Sbjct: 8 PTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADES 66
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT +AALM N
Sbjct: 67 LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQ 126
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE ASR+K L AN+ R G+ NT + N+DG L D VL+DAPCSG G
Sbjct: 127 GVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERFDAVLIDAPCSGEG 185
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD + SLE IQ + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 186 TIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVYSTCTLSREENQQV 241
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ LK+ V F G + F + E +P +++ +GFFVAK++K+
Sbjct: 242 C-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 295
Query: 384 SN 385
++
Sbjct: 296 AS 297
>gi|423206670|ref|ZP_17193226.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AMC34]
gi|404622222|gb|EKB19087.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AMC34]
Length = 476
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 165/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK D ++ G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKIAVSDFVALMEPLGWQLDPV-PWCDTGFWLTRSDETVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL +K + ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAVVQQGLLESAFHAL----KPGGVLVYSTCTLSEQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V L K L F + F + E +P + + +GFFVA+L+K
Sbjct: 257 VCQSLLDK-----FGDALSFDSLADL-FPHAEQACTSEGYLHVWPQIFDSEGFFVARLRK 310
Query: 383 MSNSKKTSAGP 393
+ T P
Sbjct: 311 HHSVPNTMFKP 321
>gi|423209618|ref|ZP_17196172.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AER397]
gi|404617476|gb|EKB14412.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AER397]
Length = 476
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 165/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK D ++ G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKIAVSDFVALMEPLGWQLDPV-PWCDTGFWLTRSDETVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL +K + ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSEQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V L K L F + F + E +P + + +GFFVA+L+K
Sbjct: 257 VCQSLLDK-----FGDALSFDSLADL-FPHAEQACTSEGYLHVWPQIFDSEGFFVARLRK 310
Query: 383 MSNSKKTSAGP 393
+ T P
Sbjct: 311 HHSVPNTMFKP 321
>gi|389847107|ref|YP_006349346.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|448614944|ref|ZP_21663972.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|388244413|gb|AFK19359.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|445753031|gb|EMA04450.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
Length = 313
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ + E+P P +R NT+KT + L + GV +P + W G++ + P G
Sbjct: 17 FLAACERPLPSVVRVNTIKTTVERAREALDDEGVAYEP-TDWHP-GILKLEESSP-GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ER+ D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERIWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELPKVLG-LNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P+ G DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPFGERTPEEPGSFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ + + +QK ++ A+ + +K GG +VYSTC++ ENEAV
Sbjct: 194 TCRKNPDVLDEWTMNHVASVAGIQKGILRRAVQV----TKPGGSVVYSTCTLAPEENEAV 249
Query: 324 IDYALKKRDVKLVPCGL--DF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D ++V + +F G + + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCEMVEWDVPDNFETSSGITEWEDEEYDPSVTKARRVYPHQNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|262402183|ref|ZP_06078744.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC586]
gi|262350965|gb|EEZ00098.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC586]
Length = 473
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P L + I + ++P +R NTLK + + L P+
Sbjct: 9 EEFIASMAKILPDSTSLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKNWQLSPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +SQVP+G T E+MAG + +Q ASS +PV AL E + V+DMAAAPG
Sbjct: 68 WCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFMGDAEYDCVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM+N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMENQGVLVANEFSASRVKVLHANIERCGIRNTALTNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + S++ I + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSMDAINSIASTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQEVC-WHLKQTYGDAV----SFESLGNL-FEHASIALTDEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>gi|258622869|ref|ZP_05717885.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM573]
gi|424809774|ref|ZP_18235147.1| NOL1/NOP2/sun family protein [Vibrio mimicus SX-4]
gi|258584808|gb|EEW09541.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM573]
gi|342322871|gb|EGU18658.1| NOL1/NOP2/sun family protein [Vibrio mimicus SX-4]
Length = 473
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 19/316 (6%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P +L + I + ++P +R NTLK D + L P+
Sbjct: 9 EDFITSMAKILPDSTQLADFIAACQRPLRKSIRVNTLKISVADFCQRAAEKNWQLSPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVIDMAAAPG 190
W + G + +SQVP+G T E+MAG + +Q ASS +PV AL + + V+DMAAAPG
Sbjct: 68 WCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALTNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + S++ I + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPC-GLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STC++ EN+ V + LK+ V LD F + + E +P +
Sbjct: 243 STCTLSREENQEVC-WHLKQTYGDAVSFESLD------NLFEQASLALTEEGFLHIFPQM 295
Query: 370 HNMDGFFVAKLKKMSN 385
++ +GFFVAK++K+++
Sbjct: 296 YDCEGFFVAKIRKLAS 311
>gi|423199869|ref|ZP_17186449.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AER39]
gi|404621481|gb|EKB18368.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AER39]
Length = 476
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 165/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK D ++ G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKIAVSDFVALMEPLGWQLDPV-PWCDTGFWLTRSDETVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL +K + ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSEQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V L K L F + F + E +P + + +GFFVA+L+K
Sbjct: 257 VCQSLLDK-----FGDALSFDSLADL-FPHAEQACTSEGYLHVWPQIFDSEGFFVARLRK 310
Query: 383 MSNSKKTSAGP 393
+ T P
Sbjct: 311 HHSVPNTMFKP 321
>gi|345304456|ref|YP_004826358.1| tRNA (cytosine-5-)-methyltransferase [Rhodothermus marinus
SG0.5JP17-172]
gi|345113689|gb|AEN74521.1| tRNA (cytosine-5-)-methyltransferase [Rhodothermus marinus
SG0.5JP17-172]
Length = 304
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 163/312 (52%), Gaps = 15/312 (4%)
Query: 78 LIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS 136
L A + P V+ E + + +P P+C TNTL+T + L G+ +PL+ S
Sbjct: 3 LPAAFIRYRPIVDDWEAFVATLRRPLPVCAWTNTLRTTPEQVKAALEAEGLKPEPLAWRS 62
Query: 137 KVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYI 196
+ DSQ G Y+ G Y +Q S LPV L PQ ERV+D+ AAPGGKT I
Sbjct: 63 DAFRLPPDSQP--GNRLAYVLGHYHVQEEVSLLPVPLLDPQPGERVLDLCAAPGGKTAQI 120
Query: 197 AALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256
A M+N G + AN+ RL+ L+ + R+G+ N +DG + P L DRVL+D
Sbjct: 121 AVRMRNRGTVVANDRNPLRLRQLSGTIERLGLLNVTTTLHDGADYP--LESGPFDRVLID 178
Query: 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316
PCS G KD+ V + + + LQ L+ A+ + + GG IVY+TC+
Sbjct: 179 VPCSCEGNFRKDQQV--ADAFAGAPELCGLQTALLHRAVTL----CRPGGRIVYATCTFA 232
Query: 317 VTENEAVIDYALKKRD--VKLVPCGLDF--GRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
ENE V+D L++ ++L+P L+ G G + R HPSLE T R +PH+++
Sbjct: 233 PEENELVVDAVLRRWGEALRLLPARLEGFRGAPGLTAWNGRRLHPSLELTLRVWPHLNDT 292
Query: 373 DGFFVAKLKKMS 384
GFFVA L++ +
Sbjct: 293 GGFFVAVLERQA 304
>gi|262171479|ref|ZP_06039157.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
MB-451]
gi|261892555|gb|EEY38541.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
MB-451]
Length = 473
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 19/316 (6%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P +L + I + ++P +R NTLK D + L P+
Sbjct: 9 EDFITSMAKILPDSTQLADFIAACQRPLRKSIRVNTLKISVADFCQRAAEKNWQLSPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVIDMAAAPG 190
W + G + +SQVP+G T E+MAG + +Q ASS +PV AL + + V+DMAAAPG
Sbjct: 68 WCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALTNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + S++ I + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPC-GLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STC++ EN+ V + LK+ V LD F + + E +P +
Sbjct: 243 STCTLSREENQEVC-WHLKQTYGDAVSFESLD------NLFEQASLALTEEGFLHIFPQM 295
Query: 370 HNMDGFFVAKLKKMSN 385
++ +GFFVAK++K+++
Sbjct: 296 YDCEGFFVAKIRKLAS 311
>gi|424591199|ref|ZP_18030631.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1037(10)]
gi|408032670|gb|EKG69250.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1037(10)]
Length = 473
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 170/315 (53%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K G +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVDGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>gi|448585436|ref|ZP_21647829.1| tRNA and rRNA cytosine-C5-methylase [Haloferax gibbonsii ATCC
33959]
gi|445726136|gb|ELZ77753.1| tRNA and rRNA cytosine-C5-methylase [Haloferax gibbonsii ATCC
33959]
Length = 313
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 157/301 (52%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ERV D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELPKVLG-LNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P+ G DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPFGERTPEKSGSFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ ++ + +QK ++ A+ + +K+GG +VYSTC+ ENEA+
Sbjct: 194 TCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQV----TKAGGTVVYSTCTFAPEENEAI 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D ++V + G + G + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCEVVEWDVPDGFETAPGITEWEGDEYDPSVTKARRVYPHHNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|448562423|ref|ZP_21635381.1| tRNA and rRNA cytosine-C5-methylase [Haloferax prahovense DSM
18310]
gi|445718741|gb|ELZ70425.1| tRNA and rRNA cytosine-C5-methylase [Haloferax prahovense DSM
18310]
Length = 313
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 157/301 (52%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFAACERPLPSVVRVNTIKTTVTRAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ERV D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELPKVLG-LNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P+ G DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPFGERTPEKSGSFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ ++ + +QK ++ A+ + +K+GG +VYSTC+ ENEA+
Sbjct: 194 TCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQV----TKAGGTVVYSTCTFAPEENEAI 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D ++V + G + G + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCEVVEWDVPDGFETAPGITEWEGDEYDPSVTKARRVYPHHNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|337287123|ref|YP_004626596.1| RNA methylase, NOL1/NOP2/sun family [Thermodesulfatator indicus DSM
15286]
gi|335359951|gb|AEH45632.1| RNA methylase, NOL1/NOP2/sun family [Thermodesulfatator indicus DSM
15286]
Length = 308
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 153/292 (52%), Gaps = 10/292 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLA-DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
+E ++P P+ R N LK ++A L +GV +P+ + V P+G T
Sbjct: 24 FLEHLKEPLPLYFRLNELKCPEPEMALKGLARQGVQTEPVPGLPQF-YKVEPRDFPLGNT 82
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY G+ + SS LPV+AL P+ E ++DM AAPG KTT IA K+ +I AN+ +
Sbjct: 83 EEYYLGYIYPMTISSALPVIALEPEPGEYILDMCAAPGSKTTQIAQAAKDKAVIVANDRR 142
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
RL +L ANL R+GV + + Y G P G+ D+VL+DAPCSG G + +
Sbjct: 143 LDRLTALVANLKRLGVASAMTTLYRGEVFP--FGV-PFDKVLVDAPCSGEGRYRQGYEGE 199
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
E +QK L++ A D+V K GG +VYSTC+ ENE V+DY L+KR
Sbjct: 200 LLYQKEGHTNLPAIQKGLLVRAFDLV----KVGGVVVYSTCTFNPEENELVVDYLLRKRQ 255
Query: 333 VKLVPCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+++PC G + HP L RFYPH GFFVAK+K++
Sbjct: 256 AEILPCEYPLPCHPGITEWEGKILHPGLANAARFYPHETQSVGFFVAKIKRL 307
>gi|433445489|ref|ZP_20409875.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Anoxybacillus
flavithermus TNO-09.006]
gi|432001039|gb|ELK21925.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Anoxybacillus
flavithermus TNO-09.006]
Length = 457
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 156/287 (54%), Gaps = 12/287 (4%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LR N+LK ++ L+P+ + G Y++Q G P + AG Y +Q
Sbjct: 40 LRINSLKVSPSTFLNI---SPWELEPIP-FCPTGFYYYNAQP--GKHPYHAAGLYYIQEP 93
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
S+ LAP ERV+D+ AAPGGKTT +AA+M N G + ANE+ R+K+L+ N+ R
Sbjct: 94 SAMFVAEVLAPSPGERVLDLCAAPGGKTTQLAAMMNNEGFLLANEIHPKRVKALSENIER 153
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
+G+TNT+V N +L + D++L+DAPCSG G+ KD SLE +QKC+
Sbjct: 154 LGITNTVVTNETPEKLSETFE-EFFDKILVDAPCSGEGMFRKDAEAIQFWSLEHVQKCAQ 212
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK-RDVKLVPCGLDFGR 344
Q+ ++ A M+ GG +VYSTC+ ENE +ID+ L D++L+P + G
Sbjct: 213 TQRHILSCAYKMLS----EGGTLVYSTCTFSPEENEQIIDWFLATYEDMELIPIEKEDGI 268
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
Q V + ++ T R +PH +G FVAK++K ++K +
Sbjct: 269 QPGVSHWTNTHRGNIAHTARLWPHHLKGEGHFVAKMRKRGSTKHWNG 315
>gi|212557100|gb|ACJ29554.1| Nop2p [Shewanella piezotolerans WP3]
Length = 547
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 178/336 (52%), Gaps = 36/336 (10%)
Query: 74 YNEFLIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+N+ I ++ + P ME I KP +R NTLK ++ ++ +G + DP+
Sbjct: 77 FNQNFINSIKQDLPSHLCMEDFISYSSKPLRPSIRVNTLKISSKNFIKLMTPKGWHFDPI 136
Query: 133 SKWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK----ERVIDMAA 187
W + G + D +V +G T E++ G + +Q ASS LP AL E+ + V+DMA+
Sbjct: 137 P-WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMAS 195
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG- 246
APG KTT IAALM N GL+ ANE ASR+K L AN+ RMGV N + ++D +V G
Sbjct: 196 APGSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDA----RVFGE 251
Query: 247 --LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
D VLLDAPCSG G I KD + D++ QK LI +A + K+
Sbjct: 252 YMFEIFDSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSL----KA 307
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT-- 362
GG +VYSTC++ EN+ V DY LK+R P ++F P +K+
Sbjct: 308 GGELVYSTCALSRQENQNVCDY-LKQR----YPDAVEF-------INLSSLFPGADKSCT 355
Query: 363 ----RRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQ 394
+P +++ +GFFVAK+KK+S+ ++ P+
Sbjct: 356 EEGFLHVWPQIYDSEGFFVAKIKKVSSIERVLPEPK 391
>gi|290508835|ref|ZP_06548206.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
1_1_55]
gi|289778229|gb|EFD86226.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
1_1_55]
Length = 477
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 165/300 (55%), Gaps = 23/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W + G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALA---PQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
G+T E+++G + +Q ASS LPV AL PQ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNPQ-PERVMDVAAAPGSKTTQIAARMGNAGGI 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVR 204
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + S E + Q++LI +A + + GG +VYSTC++ EN++V+ +
Sbjct: 205 KDADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVVQW 260
Query: 327 ALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 261 LLSRYPQAVEILPLGDLFSGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
>gi|262165707|ref|ZP_06033444.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
VM223]
gi|262025423|gb|EEY44091.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
VM223]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 19/316 (6%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P +L + I + ++P +R NTLK D + L P+
Sbjct: 28 EDFITSMAKILPDSTQLADFIAACQRPLRKSIRVNTLKISVADFCQRAAEKNWQLSPV-P 86
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVIDMAAAPG 190
W + G + +SQVP+G T E+MAG + +Q ASS +PV AL + + V+DMAAAPG
Sbjct: 87 WCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPG 146
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 147 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALTNFDGCVFGGWLP-ERF 205
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + S++ I + QK LI +A + K GG +VY
Sbjct: 206 DAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAFQAL----KVGGTLVY 261
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPC-GLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STC++ EN+ V + LK+ V LD F + + E +P +
Sbjct: 262 STCTLSREENQEVC-WHLKQTYGDAVSFESLD------NLFEQASLALTEEGFLHIFPQM 314
Query: 370 HNMDGFFVAKLKKMSN 385
++ +GFFVAK++K+++
Sbjct: 315 YDCEGFFVAKIRKLAS 330
>gi|449144037|ref|ZP_21774855.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio mimicus CAIM
602]
gi|449080361|gb|EMB51277.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio mimicus CAIM
602]
Length = 473
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 19/316 (6%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P +L + I + ++P +R NTLK D + L P+
Sbjct: 9 EDFITSMAKILPDSTQLADFIAACQRPLRKSIRVNTLKISVADFCLRAAEKNWQLSPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVIDMAAAPG 190
W + G + +SQVP+G T E+MAG + +Q ASS +PV AL + + V+DMAAAPG
Sbjct: 68 WCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALTNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + S++ I + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPC-GLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STC++ EN+ V + LK+ + V LD F + + E +P +
Sbjct: 243 STCTLSREENQEVC-WHLKQSYGEAVSFESLD------NLFEQASLALTEEGFLHIFPQM 295
Query: 370 HNMDGFFVAKLKKMSN 385
++ +GFFVAK++K+++
Sbjct: 296 YDCEGFFVAKIRKLAS 311
>gi|433422122|ref|ZP_20405923.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. BAB2207]
gi|448595829|ref|ZP_21653276.1| tRNA and rRNA cytosine-C5-methylase [Haloferax alexandrinus JCM
10717]
gi|432198703|gb|ELK54957.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. BAB2207]
gi|445742283|gb|ELZ93778.1| tRNA and rRNA cytosine-C5-methylase [Haloferax alexandrinus JCM
10717]
Length = 313
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 157/301 (52%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ERV D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELPKVLG-LNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P+ G DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPFGERTPERDGSFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ ++ + +QK ++ A+ + +K+GG +VYSTC+ ENEA+
Sbjct: 194 TCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQV----TKAGGTVVYSTCTFAPEENEAI 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D ++V + G + G + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCEVVEWDVPDGFETAPGITEWEGDEYDPSVTKARRVYPHHNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|206579412|ref|YP_002237778.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
342]
gi|226725340|sp|B5XQ35.1|RSMF_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|206568470|gb|ACI10246.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae 342]
Length = 477
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 165/300 (55%), Gaps = 23/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W + G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALA---PQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
G+T E+++G + +Q ASS LPV AL PQ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNPQ-PERVMDVAAAPGSKTTQIAARMGNAGGI 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVR 204
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + S E + Q++LI +A + + GG +VYSTC++ EN++V+ +
Sbjct: 205 KDADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVVQW 260
Query: 327 ALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 261 LLSRYPQAVEILPLGDLFSGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
>gi|297618702|ref|YP_003706807.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
gi|297377679|gb|ADI35834.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
Length = 322
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 168/280 (60%), Gaps = 23/280 (8%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTL+ +L L N+ V L+ + V S +GATPEY+ G+Y +QS
Sbjct: 64 IRVNTLQIAPEELKKRLENKKVVLE--DTFLDYAFKVVSSPFSVGATPEYLYGYYFMQSI 121
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +PV+AL PQ+ ER++DM AAPGGKTT+IA L++N G+I+A E+ +R++SLT+N++R
Sbjct: 122 SSMVPVIALNPQKNERILDMCAAPGGKTTHIAQLLENEGVIFAVEVNKNRIRSLTSNVNR 181
Query: 226 MGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS 284
MG+ + + N D L + LGL D++LLDAPC+G KD S ++S DI CS
Sbjct: 182 MGIKDVVTINTDSVNLKSEELGL--FDKILLDAPCTGNAY--KDSSRIKNRS--DILFCS 235
Query: 285 YLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFG 343
QK+LI AI+++ KSGG +VYSTCS + E+E VI + + R DV+L+ LD
Sbjct: 236 NRQKELIHTAINLL----KSGGELVYSTCSPEIEEDEEVISHIVNLRNDVELIK--LDKN 289
Query: 344 RQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ ++ +L+ P F++AKLKK+
Sbjct: 290 DYKGLNIQDALIKGTLKILPPNEP-------FYIAKLKKL 322
>gi|411009315|ref|ZP_11385644.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas aquariorum
AAK1]
Length = 476
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 164/317 (51%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK + G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL E+ R ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMDNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+ANL R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ + EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSLQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFF 376
V K FG F P+ EK +P + + +GFF
Sbjct: 257 VCQSLQDK-----------FG-DAFSFDSLADLFPAAEKACTPEGYLHVWPQIFDSEGFF 304
Query: 377 VAKLKKMSNSKKTSAGP 393
VA+L+K + T P
Sbjct: 305 VARLRKQHSVPNTMFKP 321
>gi|146325689|sp|A0KKI5.2|RSMF_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 475
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 165/317 (52%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK + G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL E+ R ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+ANL R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ + EN+A
Sbjct: 201 GSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSLQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFF 376
V L K FG F P+ E+ +P + + +GFF
Sbjct: 257 VCQSLLDK-----------FG-AAFSFDSLADLFPAAEQACTPEGYLHVWPQIFDSEGFF 304
Query: 377 VAKLKKMSNSKKTSAGP 393
VA+L+K + T P
Sbjct: 305 VARLRKHYSVPNTMFKP 321
>gi|294897435|ref|XP_002775969.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239882366|gb|EER07785.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 150
Score = 177 bits (449), Expect = 1e-41, Method: Composition-based stats.
Identities = 82/147 (55%), Positives = 113/147 (76%)
Query: 69 GSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVN 128
+YYGYNE L +++MF P E ++L E+ ++PRP+ +R NT+KTRRR LA LI RG
Sbjct: 4 ANYYGYNEELAAYILDMFAPGEAVQLFEANDRPRPMTIRANTIKTRRRLLAQQLIARGCQ 63
Query: 129 LDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAA 188
++P +W+KVGL V +S+VPIGATPEY++G YMLQSASSF+PV AL Q E V+DM+AA
Sbjct: 64 VEPTGEWTKVGLTVKESKVPIGATPEYLSGRYMLQSASSFVPVQALNAQPGETVLDMSAA 123
Query: 189 PGGKTTYIAALMKNTGLIYANEMKASR 215
PGGKTTYI +M+N G+++AN+++ R
Sbjct: 124 PGGKTTYIGQMMQNQGVLFANDLREDR 150
>gi|117621518|ref|YP_856786.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117562925|gb|ABK39873.1| Sun/nucleolar protein family protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 536
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 165/317 (52%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK + G LDP+ W G + D VP+G
Sbjct: 88 EFVASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLG 146
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL E+ R ++D AAAPG KTT IAALM N G++
Sbjct: 147 NTAEHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQGML 206
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+ANL R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 207 VANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 261
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ + EN+A
Sbjct: 262 GSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSLQENQA 317
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFF 376
V L K FG F P+ E+ +P + + +GFF
Sbjct: 318 VCQSLLDK-----------FG-AAFSFDSLADLFPAAEQACTPEGYLHVWPQIFDSEGFF 365
Query: 377 VAKLKKMSNSKKTSAGP 393
VA+L+K + T P
Sbjct: 366 VARLRKHYSVPNTMFKP 382
>gi|317048471|ref|YP_004116119.1| RNA methylase [Pantoea sp. At-9b]
gi|316950088|gb|ADU69563.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. At-9b]
Length = 472
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 164/311 (52%), Gaps = 19/311 (6%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQV 147
E+ I ++P LR NTLK D + G L P+ W G + D +
Sbjct: 22 EMQRFIAISQQPLRRSLRVNTLKISVADFLAQTADYGWRLTPI-PWCAEGFWIDRDDESL 80
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
P+G+ E+++G + +Q ASS LPV AL A + +V+D+AAAPG KTT IAALM N G
Sbjct: 81 PLGSVAEHLSGLFYIQEASSMLPVAALFDAAPDAHQVMDVAAAPGSKTTQIAALMHNQGA 140
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
I ANE ASR+K L AN+ R GV+N + ++DG L D +LLDAPCSG GV+
Sbjct: 141 ILANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP-EQFDAILLDAPCSGEGVV 199
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD + +L ++ + Q+ LI +A + + GG ++YSTC++ EN+ VI
Sbjct: 200 RKDPDALRNWTLASTEEIAATQRDLIDSAFHAL----QPGGTLIYSTCTLNQIENQQVIS 255
Query: 326 YALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ L++R V G E P E +PH+ + +GFFVA+L+K ++
Sbjct: 256 W-LQQRYPGTVEI---LSLAGLFEGAEQALTP--EGYLHVFPHIFDSEGFFVARLRKTAS 309
Query: 386 SKKTSAGPQPS 396
A P PS
Sbjct: 310 ---LPALPAPS 317
>gi|386079143|ref|YP_005992668.1| rRNA methyltransferase F YebU [Pantoea ananatis PA13]
gi|354988324|gb|AER32448.1| rRNA methyltransferase F YebU [Pantoea ananatis PA13]
Length = 475
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 32/330 (9%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQV 147
+L + I+ +P LR NTLK D + G L P+ W G + D +
Sbjct: 25 DLQQFIDISLQPLRRSLRVNTLKIGVSDFLTQTAHYGWQLTPV-PWCAEGFWINREDESL 83
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
P+G+ E+++G + +Q ASS LPV AL A + V+DMAAAPG KTT IAA M N G+
Sbjct: 84 PLGSVAEHLSGLFYIQEASSMLPVTALFAAQPDAMSVMDMAAAPGSKTTQIAACMHNRGV 143
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R GVTN+ + ++D G LP+ D +LLDAPCSG
Sbjct: 144 ILANEFSASRVKVLHANITRCGVTNSALTHFDARVFGPALPE-----QFDAILLDAPCSG 198
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + SL Q + Q+ LI +A + K GG +VYSTC++ EN+
Sbjct: 199 EGVMRKDADALKNWSLTSTQTIAQTQRDLIESAFHAL----KPGGTLVYSTCTLNQIENQ 254
Query: 322 AVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
V+ + L + V++ P G E P E +PH+ + +GFFVA
Sbjct: 255 QVVAWLLARYPDAVEIAPL------NGLFAGAERAATP--EGYLHVFPHLFDSEGFFVAC 306
Query: 380 LKKMSNSKKTSAGPQPSETVEQQTPESNVS 409
L+K ++ + P+P+ V + P S+VS
Sbjct: 307 LRKTASVTRL---PEPTYKV-GKLPFSHVS 332
>gi|251789449|ref|YP_003004170.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Dickeya zeae Ech1591]
gi|247538070|gb|ACT06691.1| RNA methylase, NOL1/NOP2/sun family [Dickeya zeae Ech1591]
Length = 482
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 170/322 (52%), Gaps = 19/322 (5%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
+FL M + + + I++ +P LR NTLK D ++ G L+ + W
Sbjct: 12 DFLTAMQAIMPAHLSMDDFIDACRRPLRRSLRVNTLKISVPDFLALVAPYGWELEAV-PW 70
Query: 136 SKVGLVVYDSQ---VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
G + ++ + +G E+++G + +Q ASS LPV AL ERV+DMAAAPG
Sbjct: 71 CDDGFWLLNADEETMRLGNALEHLSGLFYIQEASSMLPVSALLLGNDTPERVLDMAAAPG 130
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAA + N G+I ANE ASR+K L ANLHR GV+NT + ++DG L T
Sbjct: 131 SKTTQIAARLHNQGVIIANEYSASRVKVLHANLHRCGVSNTALTHFDGRVFGSALP-ETF 189
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D +LLDAPCSG GV+ KD + + SLE I + Q++LIL+A + K GG ++Y
Sbjct: 190 DAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRELILSAFHAL----KPGGVLIY 245
Query: 311 STCSIMVTENEAVIDYALKK-RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
STC++ EN+ V + +++ D + D E F +P +
Sbjct: 246 STCTLNHQENQQVCRWLMQQFPDACEIESLKDLFPHAHRALTEDGF-------LHVFPQI 298
Query: 370 HNMDGFFVAKLKKMSNSKKTSA 391
++ +GFFVA+L+K + +A
Sbjct: 299 YDSEGFFVARLRKTAGVPPLAA 320
>gi|291617715|ref|YP_003520457.1| hypothetical protein PANA_2162 [Pantoea ananatis LMG 20103]
gi|291152745|gb|ADD77329.1| YebU [Pantoea ananatis LMG 20103]
Length = 488
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 32/330 (9%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQV 147
+L + I+ +P LR NTLK D + G L P+ W G + D +
Sbjct: 38 DLQQFIDISLQPLRRSLRVNTLKIGVSDFLTQTAHYGWQLTPV-PWCAEGFWINREDESL 96
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
P+G+ E+++G + +Q ASS LPV AL A + V+DMAAAPG KTT IAA M N G+
Sbjct: 97 PLGSVAEHLSGLFYIQEASSMLPVTALFEAQPDAMSVMDMAAAPGSKTTQIAACMHNRGV 156
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R GVTN+ + ++D G LP+ D +LLDAPCSG
Sbjct: 157 ILANEFSASRVKVLHANITRCGVTNSALTHFDARVFGPALPE-----QFDAILLDAPCSG 211
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + SL Q + Q+ LI +A + K GG +VYSTC++ EN+
Sbjct: 212 EGVMRKDADALKNWSLTSTQTIAQTQRDLIESAFHAL----KPGGTLVYSTCTLNQIENQ 267
Query: 322 AVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
V+ + L + V++ P G E P E +PH+ + +GFFVA
Sbjct: 268 QVVAWLLARYPDAVEIAPL------NGLFAGAERAATP--EGYLHVFPHLFDSEGFFVAC 319
Query: 380 LKKMSNSKKTSAGPQPSETVEQQTPESNVS 409
L+K ++ + P+P+ V + P S+VS
Sbjct: 320 LRKTASVTRL---PEPTYKV-GKLPFSHVS 345
>gi|378766974|ref|YP_005195439.1| rRNA methyltransferase F [Pantoea ananatis LMG 5342]
gi|365186452|emb|CCF09402.1| rRNA methyltransferase F [Pantoea ananatis LMG 5342]
Length = 488
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 32/330 (9%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQV 147
+L + I+ +P LR NTLK D + G L P+ W G + D +
Sbjct: 38 DLQQFIDISLQPLRRSLRVNTLKIGVSDFLTQTAHYGWQLTPV-PWCAEGFWINREDESL 96
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
P+G+ E+++G + +Q ASS LPV AL A + V+DMAAAPG KTT IAA M N G+
Sbjct: 97 PLGSVAEHLSGLFYIQEASSMLPVTALFAAQPDAMSVMDMAAAPGSKTTQIAACMHNRGV 156
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R GVTN+ + ++D G LP+ D +LLDAPCSG
Sbjct: 157 ILANEFSASRVKVLHANITRCGVTNSALTHFDARVFGPALPE-----QFDAILLDAPCSG 211
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + SL Q + Q+ LI +A + K GG +VYSTC++ EN+
Sbjct: 212 EGVMRKDADALKNWSLTSTQTIAQTQRDLIESAFHAL----KPGGTLVYSTCTLNQIENQ 267
Query: 322 AVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
V+ + L + V++ P G E P E +PH+ + +GFFVA
Sbjct: 268 QVVAWLLARYPDAVEIAPL------NGLFAGAERAATP--EGYLHVFPHLFDSEGFFVAC 319
Query: 380 LKKMSNSKKTSAGPQPSETVEQQTPESNVS 409
L+K ++ + P+P+ V + P S+VS
Sbjct: 320 LRKTASVTRL---PEPTYKV-GKLPFSHVS 345
>gi|448602998|ref|ZP_21656819.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445746194|gb|ELZ97656.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 313
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 156/301 (51%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ERV D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLIGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELP-KVLGLNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P K DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPYGERTPEKSESFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ ++ + +QK ++ A+ + +K+GG +VYSTC+ ENEA+
Sbjct: 194 TCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQV----TKAGGNVVYSTCTFAPEENEAI 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D ++V + G + G + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCEVVEWDVPDGFETAPGITEWEGDEYDPSVTKARRVYPHHNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|448591436|ref|ZP_21650924.1| tRNA and rRNA cytosine-C5-methylase [Haloferax elongans ATCC
BAA-1513]
gi|445733410|gb|ELZ84979.1| tRNA and rRNA cytosine-C5-methylase [Haloferax elongans ATCC
BAA-1513]
Length = 313
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 154/301 (51%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
E+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFEACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ E+V D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGEKVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG----------NELPKVLGLNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN V N D L + DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLAVTNQDARNFSMKPFGERNLDESGAFEEFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V + ++ + +QK ++ A+ + +K GG +VYSTC+ ENEAV
Sbjct: 194 TCRKNPDVLDEWHMGHVESVAGIQKGILRRAVQV----TKPGGTVVYSTCTFAPEENEAV 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D +LV + G + G + + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCELVEWDVPDGFETSSGVTEWEDAEYDPSVAKARRVYPHQNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|448576136|ref|ZP_21642179.1| tRNA and rRNA cytosine-C5-methylase [Haloferax larsenii JCM 13917]
gi|445729816|gb|ELZ81410.1| tRNA and rRNA cytosine-C5-methylase [Haloferax larsenii JCM 13917]
Length = 313
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 154/301 (51%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
E+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFEACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ E+V D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGEKVWDTCAAPGSKTTQIAAMMDDQGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLG---------LNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN V N D K G DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLAVTNQDARNFSMKPFGERNLDESGSFEEFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V + ++ + +QK ++ A+ + +K GG +VYSTC+ ENEAV
Sbjct: 194 TCRKNPDVLDEWHMGHVESVAGIQKGILRRAVQV----TKPGGTVVYSTCTFAPEENEAV 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D +LV + G + G + + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCELVEWDVPDGFETSPGVTEWEDAEYDPSVAKARRVYPHQNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|292655744|ref|YP_003535641.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|448289731|ref|ZP_21480894.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|291371381|gb|ADE03608.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|445581248|gb|ELY35609.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
Length = 313
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 156/301 (51%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILELEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ERV D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELP-KVLGLNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P + DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPYGERTPERDASFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ ++ + +QK ++ A+ + +K+GG +VYSTC+ ENEA+
Sbjct: 194 TCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQV----TKAGGTVVYSTCTFAPDENEAI 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D ++V + G + G + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCEVVEWDVPGGFETAPGITEWEGDEYDPSVTKARRVYPHHNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|440759575|ref|ZP_20938708.1| Ribosomal RNA small subunit methyltransferase F [Pantoea
agglomerans 299R]
gi|436426644|gb|ELP24348.1| Ribosomal RNA small subunit methyltransferase F [Pantoea
agglomerans 299R]
Length = 475
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 165/305 (54%), Gaps = 28/305 (9%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
+ I ++P +R NTLK D G L P+ W + G + D +P
Sbjct: 26 FAQFIAYSQQPLRRSIRVNTLKISVADFLSQTAGYGWQLTPV-PWCEEGFWISREDESLP 84
Query: 149 IGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+G+ E+++G + +Q ASS LPV AL A E V+DMAAAPG KTT IAA M N G+I
Sbjct: 85 LGSVAEHLSGLFYIQEASSMLPVTALFDAQPEVSAVMDMAAAPGSKTTQIAARMGNQGVI 144
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SR+K L AN+ R GV+N+ + ++D G LP+ D +LLDAPCSG
Sbjct: 145 LANEFSSSRVKVLHANISRCGVSNSALTHFDARVFGPALPE-----QFDAILLDAPCSGE 199
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
GVI KD + SL + + Q+ L+ +A + K+GG +VYSTC++ EN+
Sbjct: 200 GVIRKDADALKNWSLASTEAIADTQRDLLDSAFHAL----KAGGTLVYSTCTLNQIENQQ 255
Query: 323 VIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
VID+ L++ V++VP +G E P E +P + + +GFFVA+L
Sbjct: 256 VIDWLLQRYPDAVEVVPL------EGLFSGAEKAATP--EGYLHVFPQMFDSEGFFVARL 307
Query: 381 KKMSN 385
+K ++
Sbjct: 308 RKTAS 312
>gi|448540796|ref|ZP_21623717.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-646]
gi|448549099|ref|ZP_21627875.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-645]
gi|448555726|ref|ZP_21631655.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-644]
gi|445708949|gb|ELZ60784.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-646]
gi|445713788|gb|ELZ65563.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-645]
gi|445717249|gb|ELZ68967.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-644]
Length = 313
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 156/301 (51%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ERV D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELPKVLG-LNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P+ G DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPFGERTPEKDGSFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ ++ + +QK ++ A+ + +K+GG +VYSTC+ ENEAV
Sbjct: 194 TCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQV----TKAGGTVVYSTCTFAPEENEAV 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L + D ++V + G + G + + P++ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLDREDCEVVEWDVPDGFETAPGITEWEGDEYDPTVAKARRVYPHHNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|262041948|ref|ZP_06015131.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259040754|gb|EEW41842.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 477
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 165/299 (55%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL ++ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDA CSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDATCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++LI +A + + GG +VYSTC++ EN++VI++
Sbjct: 206 DADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVIEWL 261
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 262 LSRYPQAVEILPLGELFPGAADTLTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
>gi|385788568|ref|YP_005819677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia sp. Ejp617]
gi|310767840|gb|ADP12790.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia sp. Ejp617]
Length = 472
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 173/327 (52%), Gaps = 25/327 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQ 146
E I ++P LR NTLK D ++ L P+ W G + +
Sbjct: 20 EFSRFIAISQQPLRRSLRVNTLKISVDDFLRLVEPYQWALTPI-PWCPEGFWISRDDADK 78
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+P+G+T E++AG + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M + G
Sbjct: 79 LPLGSTAEHLAGLFYIQEASSMLPVSALFAGGHMPQRVMDMAAAPGSKTTQIAACMGDRG 138
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L ANL R GV+NT + ++DG L D VLLDAPCSG GV
Sbjct: 139 AILANEYSASRVKVLHANLSRCGVSNTAMTHFDGRVFGPALP-ECFDAVLLDAPCSGEGV 197
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S + + Q+ LI +A + + GG +VYSTC++ ++EN+ VI
Sbjct: 198 VRKDADALRNWSETSTAEIAATQRDLINSAFHAL----RPGGTLVYSTCTLNLSENQQVI 253
Query: 325 DYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ L++ V++ P F V E H +PH+ + +GFFVA+L+K
Sbjct: 254 RWLLEQYPDAVEIEPLDTLFNGAKEVATAEGFLH--------VFPHIFDSEGFFVARLRK 305
Query: 383 MSNSKKTSAGPQPSETVEQQTPESNVS 409
+++ K PQP+ V + P S VS
Sbjct: 306 VASVTKM---PQPTYKV-GKPPFSPVS 328
>gi|336124269|ref|YP_004566317.1| 23S rRNA m(5)C methyltransferase [Vibrio anguillarum 775]
gi|335341992|gb|AEH33275.1| Putative 23S rRNA m(5)C methyltransferase [Vibrio anguillarum 775]
Length = 492
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 167/311 (53%), Gaps = 18/311 (5%)
Query: 81 ALVEMFPPVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 138
A +E P L + I + ++P +R NTLK + +G L P+ W
Sbjct: 32 ATIEAILPTHLTMSDFIAACQRPLRKSIRVNTLKISVDSFCQRAVEKGWALSPV-PWCNT 90
Query: 139 GLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTT 194
G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT
Sbjct: 91 GFWIEADESVVPLGNTAEHMAGLFYIQEASSMMPVSALFTGGESFNSVLDMAAAPGSKTT 150
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
IAA M+N G++ ANE ASR+K L AN+ R GV N+ + N+DG L D VL
Sbjct: 151 QIAACMENEGVLVANEFSASRVKVLHANIERCGVRNSALSNFDGRVFGGWLP-EQFDAVL 209
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
+DAPCSG G I KD + S E + S QK LI +A + K GG +VYSTC+
Sbjct: 210 IDAPCSGEGTIRKDPDAMKNWSKESVLSISTTQKDLIESAFQAL----KPGGVMVYSTCT 265
Query: 315 IMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ EN+ V + LK++ P ++F + F + + + E +P ++ +G
Sbjct: 266 LSTEENQQVCLH-LKEK----YPQSVEFVSLSSL-FEDAKAAITDEGFLHIFPQTYDCEG 319
Query: 375 FFVAKLKKMSN 385
FFVAK++K+S+
Sbjct: 320 FFVAKIRKLSS 330
>gi|261211631|ref|ZP_05925918.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC341]
gi|260838981|gb|EEX65613.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC341]
Length = 473
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 172/317 (54%), Gaps = 21/317 (6%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P +L + I + ++P +R NTLK + + + L P+
Sbjct: 9 EEFITSMAKILPDSTQLADFIAACQRPLRKSIRVNTLKISVAEFCERAAEKHWQLSPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL ++ + V+DMAAAPG
Sbjct: 68 WCENGFWIEADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNEQYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAALM N G++ ANE ASR+K L AN+ R G+ N + N+DG L
Sbjct: 128 SKTTQIAALMDNAGVLVANEFSASRVKVLHANIERCGIRNAALTNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + S++ I + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPC-GLD-FGRQGFVRFREHRFHPSLEKTRRFYPH 368
STC++ + EN+ V + LK+ V LD Q + E F +P
Sbjct: 243 STCTLSLEENQQVC-WHLKQTYGDAVSFESLDNLFEQASIALTEEGF-------LHIFPQ 294
Query: 369 VHNMDGFFVAKLKKMSN 385
+++ +GFFVAK++K+++
Sbjct: 295 MYDCEGFFVAKIRKLAS 311
>gi|448624613|ref|ZP_21670561.1| tRNA and rRNA cytosine-C5-methylase [Haloferax denitrificans ATCC
35960]
gi|445749818|gb|EMA01260.1| tRNA and rRNA cytosine-C5-methylase [Haloferax denitrificans ATCC
35960]
Length = 313
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 156/301 (51%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ERV D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELP-KVLGLNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P + DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPYGERTPERDASFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ ++ + +QK ++ A+ + +K+GG +VYSTC+ ENEA+
Sbjct: 194 TCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQV----TKAGGTVVYSTCTFAPEENEAI 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D ++V + G + G + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCEVVEWDVPDGFETAPGITEWEGDEYDPSVTKARRVYPHHNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|373456730|ref|ZP_09548497.1| RNA methylase, NOL1/NOP2/sun family [Caldithrix abyssi DSM 13497]
gi|371718394|gb|EHO40165.1| RNA methylase, NOL1/NOP2/sun family [Caldithrix abyssi DSM 13497]
Length = 466
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 163/309 (52%), Gaps = 9/309 (2%)
Query: 100 KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGF 159
+P P +R NT+KT ++ L V P+S ++ GL++ D +P+ T ++ G
Sbjct: 27 RPEPRAIRVNTIKTTVAEVKKRLEQWNVPFRPVS-FNPEGLIIEDDHMPLSQTLDFFLGK 85
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSL 219
+ Q SS LP + L PQ+ ++V+D+AA+PG K+T +AA+M NTG + N++ R+++L
Sbjct: 86 FYYQGVSSQLPAVVLNPQKGDKVLDLAASPGSKSTQMAAMMDNTGFLVLNDVSMKRIQAL 145
Query: 220 TANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLED 279
N+ +G N + G + +L D+VLLDAPCS G+I V + S +
Sbjct: 146 NTNIQNIGSVNYAIYRQPGERIGNILP-EYFDKVLLDAPCSALGIIHSHPEVYSWLSAKR 204
Query: 280 IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCG 339
+ K Q+QL+++A + K GG +VYSTCSI ENE +I + L +++V
Sbjct: 205 LAKIVEQQRQLLVSAYKAL----KVGGEMVYSTCSISPEENEELIQFMLDHYPLEIVEIA 260
Query: 340 LDFGR---QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPS 396
+ + G ++ F P + + R PH+H M+GFFV KL+K K
Sbjct: 261 PEIHKLFLPGLTEYQNKSFTPDMTRAIRILPHLHEMEGFFVVKLRKTGRRHKAVKTYHTF 320
Query: 397 ETVEQQTPE 405
+T+ P+
Sbjct: 321 KTLAYNHPD 329
>gi|448570932|ref|ZP_21639443.1| tRNA and rRNA cytosine-C5-methylase [Haloferax lucentense DSM
14919]
gi|445722850|gb|ELZ74501.1| tRNA and rRNA cytosine-C5-methylase [Haloferax lucentense DSM
14919]
Length = 313
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 155/301 (51%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ E+P P +R NT+KT + L + GV +P + W L + DS G
Sbjct: 17 FFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEP-TDWHPGILKLEDSSP--GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ERV D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELP-KVLGLNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P + DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPYGERTPERDASFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ ++ + +QK ++ A+ + +K+GG +VYSTC+ ENEAV
Sbjct: 194 TCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQV----TKAGGTVVYSTCTFAPEENEAV 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L + D ++V + G + G + + PS+ K RR YPH ++ GFF AKL
Sbjct: 250 LDFVLDREDCEVVEWDVPGGFETAPGITEWEGDEYDPSVTKARRVYPHHNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|419136597|ref|ZP_13681398.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5E]
gi|377985785|gb|EHV48997.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5E]
Length = 479
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 171/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ + ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNLEENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPTP 320
>gi|289192431|ref|YP_003458372.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus sp.
FS406-22]
gi|288938881|gb|ADC69636.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus sp.
FS406-22]
Length = 266
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/281 (43%), Positives = 169/281 (60%), Gaps = 22/281 (7%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L + L N+GV L+ + V ++ IG+TPEY+ G+YM QS
Sbjct: 4 IRVNTLKINPEILKERLENKGVVLE--KTFLDYAFEVKEAPFSIGSTPEYLFGYYMPQSI 61
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E ++DM AAPGGKTT++A LMKN G I A E+ SR+K+L +N++R
Sbjct: 62 SSMIPPVVLNPEENSFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISRSRVKALKSNINR 121
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + K+ +V S EDI+ C
Sbjct: 122 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYC 177
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDF 342
S QK+LI ID++ K G +VYSTCSI + ENE VI Y L+KR DV+L+ D
Sbjct: 178 SLRQKELIDIGIDLL----KKDGELVYSTCSIEIEENEEVIKYILQKRDDVELINIKTDE 233
Query: 343 GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ + +E +L R F P+ + FF+AKLKK+
Sbjct: 234 FKG--INIKEGHIKGTL---RVFPPN----EPFFIAKLKKI 265
>gi|90578629|ref|ZP_01234439.1| putative sun/nucleolar protein family protein [Photobacterium
angustum S14]
gi|90439462|gb|EAS64643.1| putative sun/nucleolar protein family protein [Photobacterium
angustum S14]
Length = 476
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 163/310 (52%), Gaps = 35/310 (11%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DS 145
+++ E I + P +R NTLK D + NRG L P+ W G + +
Sbjct: 23 LDIDEFIACCKTPLRRSIRVNTLKISVEDFLARVANRGWTLTPVP-WCDTGFWIEREDED 81
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNT 203
V +G T E+MAG + +Q ASS +PV AL + V+DMA+APG KTT IA+ M+N
Sbjct: 82 TVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMASAPGSKTTQIASAMQNR 141
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G + ANE+ ASR+K L +NL R GV N + ++DG + D +LLDAPCSG G
Sbjct: 142 GALVANELAASRIKVLHSNLQRCGVHNAALTHFDGCVF-GTWAPESFDSILLDAPCSGEG 200
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KDE + SL I + + +Q+ LI++A + K+GG +VYSTC++ +EN+AV
Sbjct: 201 AIRKDEDAMANWSLASIDEIAEVQRNLIVSAFQAL----KTGGVMVYSTCTLNQSENQAV 256
Query: 324 IDYALKK--RDVKLVPCGLDFG-------RQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ K V+ P F + GF+ YP + + +G
Sbjct: 257 CHFLKDKFGDAVEFEPLNTLFDGAEKSLTKDGFL---------------HVYPQIFDSEG 301
Query: 375 FFVAKLKKMS 384
FFVA+++K++
Sbjct: 302 FFVARIRKLA 311
>gi|423196649|ref|ZP_17183232.1| ribosomal RNA small subunit methyltransferase F [Aeromonas
hydrophila SSU]
gi|404632103|gb|EKB28732.1| ribosomal RNA small subunit methyltransferase F [Aeromonas
hydrophila SSU]
Length = 487
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 164/317 (51%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK + G LDP+ W G + D VP+G
Sbjct: 39 EFVASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLG 97
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL EK R ++D AAAPG KTT IAALM N G++
Sbjct: 98 NTAEHLSGLFYIQEASSMLPVTALFACEKIRRDGMLLDAAAAPGSKTTQIAALMDNQGML 157
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+ANL R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 158 VANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 212
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ + EN+A
Sbjct: 213 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSLQENQA 268
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFF 376
V K FG F P+ E+ +P + + +GFF
Sbjct: 269 VCQSLQDK-----------FG-DAFSFDSLADLFPAAEQACTPEGYLHVWPQIFDSEGFF 316
Query: 377 VAKLKKMSNSKKTSAGP 393
VA+L+K + T P
Sbjct: 317 VARLRKHHSVPNTMFKP 333
>gi|257096813|sp|A9MV57.2|RSMF_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>gi|417348606|ref|ZP_12127516.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|452119959|ref|YP_007470207.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
gi|353575186|gb|EHC37993.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|451908963|gb|AGF80769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
Length = 479
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>gi|16760738|ref|NP_456355.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29141504|ref|NP_804846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|81853268|sp|Q8Z662.1|RSMF_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|25511826|pir||AB0729 conserved hypothetical protein STY1981 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503035|emb|CAD05532.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137131|gb|AAO68695.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 479
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>gi|167553462|ref|ZP_02347211.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205322100|gb|EDZ09939.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 479
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>gi|16765191|ref|NP_460806.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|374980864|ref|ZP_09722194.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378445253|ref|YP_005232885.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378450437|ref|YP_005237796.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|378699726|ref|YP_005181683.1| hypothetical protein SL1344_1779 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378989190|ref|YP_005252354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|383496537|ref|YP_005397226.1| hypothetical protein UMN798_1947 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422026030|ref|ZP_16372447.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
gi|422031067|ref|ZP_16377248.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
gi|427550200|ref|ZP_18927755.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|427566070|ref|ZP_18932470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|427586168|ref|ZP_18937259.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|427609556|ref|ZP_18942124.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|427633615|ref|ZP_18947020.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|427656081|ref|ZP_18951785.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|427661227|ref|ZP_18956696.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|427668448|ref|ZP_18961496.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|427766659|ref|ZP_18966664.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
gi|81522670|sp|Q8ZNZ2.1|RSMF_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|16420383|gb|AAL20765.1| putative rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|261247032|emb|CBG24849.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267993815|gb|ACY88700.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301158374|emb|CBW17873.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|321224484|gb|EFX49547.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|332988737|gb|AEF07720.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|380463358|gb|AFD58761.1| hypothetical protein UMN798_1947 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|414018770|gb|EKT02408.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
gi|414019248|gb|EKT02867.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|414021238|gb|EKT04794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
gi|414032936|gb|EKT15919.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|414034823|gb|EKT17739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|414037769|gb|EKT20518.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|414047745|gb|EKT30013.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|414049237|gb|EKT31456.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|414053550|gb|EKT35538.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|414059829|gb|EKT41375.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|414065300|gb|EKT46067.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
Length = 479
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>gi|168238457|ref|ZP_02663515.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|257096814|sp|B4TY18.2|RSMF_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197288700|gb|EDY28075.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 479
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>gi|161613635|ref|YP_001587600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|417510243|ref|ZP_12175208.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|161362999|gb|ABX66767.1| hypothetical protein SPAB_01359 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|353646917|gb|EHC90184.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
Length = 513
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|418817852|ref|ZP_13373336.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|418820762|ref|ZP_13376194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|418826519|ref|ZP_13381733.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
gi|257096812|sp|B4SV89.2|RSMF_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|392787391|gb|EJA43933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|392792322|gb|EJA48786.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|392806198|gb|EJA62312.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
Length = 479
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>gi|197264965|ref|ZP_03165039.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197243220|gb|EDY25840.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|417341295|ref|ZP_12122396.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|357958077|gb|EHJ82843.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|204931095|ref|ZP_03221921.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|204320139|gb|EDZ05344.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|213161347|ref|ZP_03347057.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213424193|ref|ZP_03357058.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|378959186|ref|YP_005216672.1| RNA methylase, NOL1/NOP2/sun [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|374353058|gb|AEZ44819.1| RNA methylase, NOL1/NOP2/sun [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|417325870|ref|ZP_12111720.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|353574832|gb|EHC37748.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|337283863|ref|YP_004623337.1| nucleolar protein [Pyrococcus yayanosii CH1]
gi|334899797|gb|AEH24065.1| nucleolar protein [Pyrococcus yayanosii CH1]
Length = 313
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 157/287 (54%), Gaps = 12/287 (4%)
Query: 100 KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPIGATPEYM 156
KP +R NTLK + + L R L+P+ W + G + V G PEY
Sbjct: 33 KPVRQSIRINTLKAPLELVLERLSER-YELEPVP-WVREGFFIRPPGGGTVNFGEMPEYS 90
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
G + Q ASS +P + L P+ E ++DMAAAPG KTT IA M+N G I AN+ K R
Sbjct: 91 LGLVIPQEASSMIPPVVLEPKPGELILDMAAAPGSKTTQIAQYMENEGCIIANDAKRDRA 150
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
L ANL+R GV V DG + NT DRVLLDAPCS G++ K+ + S
Sbjct: 151 NILIANLNRAGVLIAKVTVRDGAYFGRY--ENTFDRVLLDAPCSSVGMVRKNFKFAYTWS 208
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336
+ + + +Q++LILAA + K GG +VYSTC++ ENEAV+D+ L++ D KL
Sbjct: 209 IHKVLYHTRIQRKLILAAYRAL----KPGGVLVYSTCTVDPLENEAVVDFLLQRTDAKLE 264
Query: 337 PCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
L GR+ + + F P ++KT R +P ++ + FFVAK++K
Sbjct: 265 KIKLPVKGREPILEWEGREFSPEVKKTLRIHPQDNDTEAFFVAKIRK 311
>gi|162139578|ref|YP_216833.2| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|224583660|ref|YP_002637458.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|375114743|ref|ZP_09759913.1| paral putative rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|146325698|sp|Q57NF9.2|RSMF_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|254766867|sp|C0Q2Y5.1|RSMF_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|224468187|gb|ACN46017.1| hypothetical protein SPC_1879 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714889|gb|EFZ06460.1| paral putative rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 479
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGTIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>gi|194734489|ref|YP_002114882.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|194709991|gb|ACF89212.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|418859954|ref|ZP_13414541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|392828320|gb|EJA84015.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|418789154|ref|ZP_13344942.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|418794654|ref|ZP_13350372.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|418797012|ref|ZP_13352703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|392760868|gb|EJA17699.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|392761114|gb|EJA17944.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|392770385|gb|EJA27113.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|238912085|ref|ZP_04655922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 347 S---LPAMPAPGYKV 358
>gi|205358008|ref|ZP_02574896.2| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|378984412|ref|YP_005247567.1| 16S rRNA methyltransferase F [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|379701027|ref|YP_005242755.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
gi|205328183|gb|EDZ14947.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|312912840|dbj|BAJ36814.1| 16S rRNA methyltransferase F [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|323130126|gb|ADX17556.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|205359812|ref|ZP_03224420.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|409249815|ref|YP_006885630.1| Ribosomal RNA small subunit methyltransferase F rRNA
(cytosine-C(5)-)-methyltransferase rsmF; 16S rRNA
m5C1407 methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|205342570|gb|EDZ29334.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|320085643|emb|CBY95421.1| Ribosomal RNA small subunit methyltransferase F rRNA
(cytosine-C(5)-)-methyltransferase rsmF; 16S rRNA
m5C1407 methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNREENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|62128049|gb|AAX65752.1| paral putative rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
Length = 513
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGTIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|448666899|ref|ZP_21685544.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula amylolytica JCM
13557]
gi|445772030|gb|EMA23086.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula amylolytica JCM
13557]
Length = 303
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 150/290 (51%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
I++ E+P P +R NT+K + L + + DP+ W GL V P GA
Sbjct: 17 FIDACERPLPSAVRVNTIKASVERVRTALADADIAYDPVD-WHD-GLFVLPEDSP-GANW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S +P L PQ ERV D AAPG KTT +AALM++TG + A +
Sbjct: 74 PYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMEDTGEVVATDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R+ +L N R+G T V + DG N K G DR L+D PCS G I K+
Sbjct: 134 GRISALRTNTERLGATTVAVTHEDGRNHSLKPFGGEEYDRALVDVPCSCEGTIRKNPDTL 193
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
+L ++ S +QK ++ AI++ ++ GG +VYSTC+ ENEAV+DY L +
Sbjct: 194 EDWTLSHVEGISGVQKGILKRAIEV----TEPGGTVVYSTCTFAPEENEAVLDYVLDEVA 249
Query: 333 VKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V L G +++ RF PS+ +R YPH ++ GFF AKL+
Sbjct: 250 CEIVDYDLPLDHAPGITEWQDERFDPSVTNAKRIYPHHNDTGGFFCAKLE 299
>gi|194444109|ref|YP_002041104.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|200391079|ref|ZP_03217690.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|417538327|ref|ZP_12190956.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|418809386|ref|ZP_13364938.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|418813541|ref|ZP_13369062.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|418833521|ref|ZP_13388444.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|418836737|ref|ZP_13391621.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|418840489|ref|ZP_13395318.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|418845061|ref|ZP_13399847.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|418850524|ref|ZP_13405240.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|418852355|ref|ZP_13407057.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|418863417|ref|ZP_13417955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|418867034|ref|ZP_13421495.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|194402772|gb|ACF62994.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|199603524|gb|EDZ02070.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|353666779|gb|EHD04483.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|392773471|gb|EJA30167.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|392774767|gb|EJA31462.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|392795355|gb|EJA51727.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|392801098|gb|EJA57328.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|392810979|gb|EJA66991.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|392813870|gb|EJA69834.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|392818374|gb|EJA74258.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|392829571|gb|EJA85241.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|392833285|gb|EJA88900.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|392840146|gb|EJA95684.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
Length = 513
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|444350859|ref|YP_007387003.1| Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|443901689|emb|CCG29463.1| Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 458
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 162/298 (54%), Gaps = 17/298 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 9 DFIAACQRPLRRSIRVNTLKITVADFLQLVAPYGWQLTPI-PWCAEGFWIERDDDDVLPL 67
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 68 GSTAEHLSGLFYIQEASSMLPVAALFADGEMPERVMDVAAAPGSKTTQIAARMGNHGAIL 127
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 128 ANEFSASRVKVLHANISRCGINNVALTHFDGRVFGAALP-ECFDAILLDAPCSGEGVVRK 186
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE V+++
Sbjct: 187 DPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEEVVNWL 242
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
L+ + LD F + R + E +P + + +GFFVA+L+K ++
Sbjct: 243 LQTYPQAVEVLTLD------SLFPQAREALTDEGFLHVFPQIFDCEGFFVARLRKTAS 294
>gi|423120918|ref|ZP_17108602.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5246]
gi|376395548|gb|EHT08194.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5246]
Length = 462
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 162/298 (54%), Gaps = 21/298 (7%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPIG 150
I + ++P LR NTLK D + G L P+ W + G + + +P+G
Sbjct: 14 FIAACQRPLRRSLRVNTLKISVADFLQQVAPYGWQLTPI-PWCEEGFWIERDDEDSLPLG 72
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
+T E+++G + +Q ASS LPV AL +RV+D+AAAPG KTT IAA M N G I A
Sbjct: 73 STAEHLSGLFYIQEASSMLPVAALFADGDMPQRVMDVAAAPGSKTTQIAARMGNKGGILA 132
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+ KD
Sbjct: 133 NEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ERFDAILLDAPCSGEGVVRKD 191
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
+ S E Q+ + Q++LI +A + + GG +VYSTC++ ENE V+ + L
Sbjct: 192 PDALKNWSPESNQQIAETQRELIDSAFHAL----RPGGTLVYSTCTLNREENEEVVQWLL 247
Query: 329 KK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
+ + V+++P G F + E H +P + + +GFFVA+LKK +
Sbjct: 248 ARYPQAVEVLPLGTLFPQATEALTAEGFLH--------VFPQIFDCEGFFVARLKKTA 297
>gi|417390446|ref|ZP_12153937.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Minnesota str. A4-603]
gi|417457914|ref|ZP_12163918.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|353618779|gb|EHC69362.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Minnesota str. A4-603]
gi|353633546|gb|EHC80324.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
Length = 479
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 167/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>gi|336251008|ref|YP_004594718.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter
aerogenes KCTC 2190]
gi|334737064|gb|AEG99439.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter
aerogenes KCTC 2190]
Length = 477
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 162/298 (54%), Gaps = 17/298 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKITVADFLQLVAPYGWQLTPV-PWCAEGFWIERDDDDVLPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGEMPERVMDVAAAPGSKTTQIAARMSNHGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGINNVALTHFDGRVFGAALP-ECFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE V+++
Sbjct: 206 DPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEEVVNWL 261
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
L+ + LD F + R + E +P + + +GFFVA+L+K ++
Sbjct: 262 LQTYPQAVEVLTLD------SLFPQAREALTDEGFLHVFPQIFDCEGFFVARLRKTAS 313
>gi|432397627|ref|ZP_19640408.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE25]
gi|432406843|ref|ZP_19649552.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE28]
gi|432723251|ref|ZP_19958171.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE17]
gi|432727838|ref|ZP_19962717.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE18]
gi|432741529|ref|ZP_19976248.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE23]
gi|432990839|ref|ZP_20179503.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE217]
gi|433111050|ref|ZP_20296915.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE150]
gi|430915731|gb|ELC36809.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE25]
gi|430929602|gb|ELC50111.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE28]
gi|431265805|gb|ELF57367.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE17]
gi|431273527|gb|ELF64601.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE18]
gi|431283220|gb|ELF74079.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE23]
gi|431494921|gb|ELH74507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE217]
gi|431628354|gb|ELI96730.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE150]
Length = 481
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 179/340 (52%), Gaps = 38/340 (11%)
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
+ Y + FL EM + + + + ++P +R NTLKT D + G L
Sbjct: 7 TVYFPDAFLTQMREEMPSTLSFDDFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTL 66
Query: 130 DPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMAL-----APQEKER 181
P+ W + G + + +P+G+T E+++G + +Q ASS LPV AL APQ R
Sbjct: 67 TPI-PWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---R 122
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
V+D+AAAPG KTT IAA M N G I ANE ASR+K L AN+ R G++N + ++DG
Sbjct: 123 VMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG--- 179
Query: 242 PKVLGLNT---VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
+V G D +LLDAPCSG GV+ KD + S E Q+ + Q++LI +A +
Sbjct: 180 -RVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL 238
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRF 355
+ GG +VYSTC++ ENEAV + LK+ V+ +P G F E
Sbjct: 239 ----RPGGTLVYSTCTLNREENEAVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFL 293
Query: 356 HPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQP 395
H +P +++ +GFFVA+L+K ++ A P P
Sbjct: 294 H--------VFPQIYDCEGFFVARLRK---TQAIPALPTP 322
>gi|399574398|ref|ZP_10768157.1| nol1/nop2/sun family RNA methylase [Halogranum salarium B-1]
gi|399240230|gb|EJN61155.1| nol1/nop2/sun family RNA methylase [Halogranum salarium B-1]
Length = 311
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 150/290 (51%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+E+ ++P P +R NT+K + L + GV + + W+ L + + + G T
Sbjct: 17 FLEACDRPLPYSVRVNTIKATVERATEALDDEGVGYE-QTDWNPEILRLTEGKA--GTTW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ E V D AAPG K+T ++ALM + G + AN+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGETVWDTCAAPGSKSTQLSALMDDEGFVVANDNSL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
RL +L N R+GVTN V N D K + DR L+DAPCS G K+
Sbjct: 134 GRLSALRHNAERLGVTNVAVTNKDARNFSLKPFDFDQFDRTLVDAPCSCEGTCRKNPDAL 193
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
+++ + +QK +I AI ++ GG +VYSTC+ ENEA++++AL+ D
Sbjct: 194 EKWTMDHVHSVVGIQKGIIRRAIQA----TRPGGTVVYSTCTFAPEENEAIVNHALETED 249
Query: 333 VKLVPCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V G + + +HPS+EKT R YPH ++ GFF AKL+
Sbjct: 250 CEVVEFDTPLETSPGITEWEDEEYHPSVEKTHRVYPHQNDTGGFFCAKLQ 299
>gi|417474637|ref|ZP_12169677.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|353646786|gb|EHC90100.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
Length = 513
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADGNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|416535199|ref|ZP_11747563.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|416550307|ref|ZP_11755890.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|417357582|ref|ZP_12132689.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|417378938|ref|ZP_12147446.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Johannesburg str.
S5-703]
gi|417530088|ref|ZP_12185526.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Urbana str. R8-2977]
gi|353593695|gb|EHC51389.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|353618957|gb|EHC69497.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Johannesburg str.
S5-703]
gi|353666686|gb|EHD04417.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Urbana str. R8-2977]
gi|363566341|gb|EHL50358.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|363568740|gb|EHL52716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
Length = 513
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADGNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|289826537|ref|ZP_06545617.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 510
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|433323069|ref|ZP_20400439.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J96]
gi|432348237|gb|ELL42688.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J96]
Length = 479
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 173/317 (54%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHSL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|259908244|ref|YP_002648600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia pyrifoliae
Ep1/96]
gi|387871089|ref|YP_005802462.1| ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae
DSM 12163]
gi|224963866|emb|CAX55368.1| Ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae
Ep1/96]
gi|283478175|emb|CAY74091.1| Ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae
DSM 12163]
Length = 462
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 172/327 (52%), Gaps = 25/327 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQ 146
E I ++P LR NTLK D ++ L P+ W G + +
Sbjct: 10 EFSRFIAISQQPLRRSLRVNTLKISVDDFLRLVEPYQWALTPI-PWCPEGFWISRDDADK 68
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+P+G+T E++AG +Q ASS LPV AL +RV+DMAAAPG KTT IAA M + G
Sbjct: 69 LPLGSTAEHLAGLLYIQEASSMLPVSALFAGGHMPQRVMDMAAAPGSKTTQIAACMGDRG 128
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L ANL R GV+NT + ++DG L D VLLDAPCSG GV
Sbjct: 129 AILANEYSASRVKVLHANLSRCGVSNTAMTHFDGRVFGSALP-ECFDAVLLDAPCSGEGV 187
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S + + Q+ LI +A + + GG +VYSTC++ ++EN+ VI
Sbjct: 188 VRKDADALRNWSETSTAEIAATQRDLINSAFHAL----RPGGTLVYSTCTLNLSENQQVI 243
Query: 325 DYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ L++ V++ P F V E H +PH+ + +GFFVA+L+K
Sbjct: 244 RWLLEQYPDAVEIEPLDTLFNGAEQVATAEGFLH--------VFPHIFDSEGFFVARLRK 295
Query: 383 MSNSKKTSAGPQPSETVEQQTPESNVS 409
+++ K PQP+ V + P S VS
Sbjct: 296 VASVTKM---PQPTYKV-GKPPFSPVS 318
>gi|432441244|ref|ZP_19683585.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE189]
gi|432446364|ref|ZP_19688663.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE191]
gi|433013969|ref|ZP_20202331.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE104]
gi|433023598|ref|ZP_20211599.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE106]
gi|430967085|gb|ELC84447.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE189]
gi|430972637|gb|ELC89605.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE191]
gi|431531955|gb|ELI08610.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE104]
gi|431537249|gb|ELI13397.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE106]
Length = 481
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 173/317 (54%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHSL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|375083393|ref|ZP_09730416.1| nucleolar protein I [Thermococcus litoralis DSM 5473]
gi|374741903|gb|EHR78318.1| nucleolar protein I [Thermococcus litoralis DSM 5473]
Length = 304
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 150/278 (53%), Gaps = 11/278 (3%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK + L R L+P+ W K G + + G EY G Q A
Sbjct: 36 IRINTLKAPLEYVKARLEER-YELEPIP-WVKEGFFINTRE--FGDMIEYALGLVFPQEA 91
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+ +E V+DMAAAPG KTT IA MKN G I AN++K R L ANL+R
Sbjct: 92 SSMIPPVVLDPKPRELVLDMAAAPGAKTTQIAQYMKNEGCIIANDLKKWRANVLIANLNR 151
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
GV N V DG + NT DRVLLDAPCS G+I K T S++ + + S
Sbjct: 152 FGVLNARVTVKDGIYFSRF--ENTFDRVLLDAPCSSVGMIRKSFKFLTDWSMKKVIRYSN 209
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDF-GR 344
+QK+LI+AA + K GG +VYSTC+I ENE V+DY L K D KL L
Sbjct: 210 IQKKLIVAAYKAL----KPGGVLVYSTCTIDPLENEEVVDYLLSKTDAKLEKINLPLKST 265
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ F ++ ++K R +P +N + FF+AK++K
Sbjct: 266 PPVLEFEGKKYSEEVKKCLRIHPQDNNTEAFFIAKIRK 303
>gi|425404657|ref|ZP_18786988.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1870]
gi|408328964|gb|EKJ44503.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1870]
Length = 479
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPTP 320
>gi|419114978|ref|ZP_13660000.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5A]
gi|377962183|gb|EHV25646.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5A]
Length = 479
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPTP 320
>gi|187776449|ref|ZP_02802778.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4196]
gi|189010611|ref|ZP_02808140.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4076]
gi|189402623|ref|ZP_02783593.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4401]
gi|189404116|ref|ZP_02787380.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4501]
gi|189405107|ref|ZP_02813260.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC869]
gi|208816841|ref|ZP_03257961.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4045]
gi|208821320|ref|ZP_03261640.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4042]
gi|209399709|ref|YP_002270917.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. EC4115]
gi|254793459|ref|YP_003078296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. TW14359]
gi|261227667|ref|ZP_05941948.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258167|ref|ZP_05950700.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. FRIK966]
gi|416323062|ref|ZP_11664671.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC1212]
gi|416773921|ref|ZP_11873915.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. G5101]
gi|416785923|ref|ZP_11878819.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H- str. 493-89]
gi|416796902|ref|ZP_11883736.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H- str. H 2687]
gi|416808346|ref|ZP_11888391.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. 3256-97]
gi|416827600|ref|ZP_11897616.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. USDA 5905]
gi|416828981|ref|ZP_11898275.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. LSU-61]
gi|419045306|ref|ZP_13592252.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3A]
gi|419051372|ref|ZP_13598253.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3B]
gi|419057372|ref|ZP_13604187.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3C]
gi|419062751|ref|ZP_13609490.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3D]
gi|419069654|ref|ZP_13615290.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3E]
gi|419075726|ref|ZP_13621257.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3F]
gi|419080888|ref|ZP_13626345.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4A]
gi|419086523|ref|ZP_13631893.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4B]
gi|419092504|ref|ZP_13637797.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4C]
gi|419098361|ref|ZP_13643574.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4D]
gi|419104146|ref|ZP_13649287.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4E]
gi|419109698|ref|ZP_13654765.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4F]
gi|419120653|ref|ZP_13665619.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5B]
gi|420269456|ref|ZP_14771829.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA22]
gi|420275598|ref|ZP_14777899.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA40]
gi|420280728|ref|ZP_14782975.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW06591]
gi|420286997|ref|ZP_14789194.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW10246]
gi|420292580|ref|ZP_14794712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW11039]
gi|420298367|ref|ZP_14800430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09109]
gi|420304138|ref|ZP_14806145.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW10119]
gi|420309594|ref|ZP_14811538.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1738]
gi|420315060|ref|ZP_14816943.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1734]
gi|421818550|ref|ZP_16254062.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0821]
gi|421824171|ref|ZP_16259565.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK920]
gi|421831058|ref|ZP_16266356.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA7]
gi|423711519|ref|ZP_17685828.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA31]
gi|424077674|ref|ZP_17814728.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA505]
gi|424084050|ref|ZP_17820611.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA517]
gi|424090471|ref|ZP_17826499.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1996]
gi|424096996|ref|ZP_17832416.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1985]
gi|424103334|ref|ZP_17838210.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1990]
gi|424110057|ref|ZP_17844376.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93-001]
gi|424115763|ref|ZP_17849694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA3]
gi|424122132|ref|ZP_17855545.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA5]
gi|424128258|ref|ZP_17861234.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA9]
gi|424134449|ref|ZP_17866995.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA10]
gi|424141088|ref|ZP_17873066.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA14]
gi|424147515|ref|ZP_17878976.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA15]
gi|424153448|ref|ZP_17884463.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA24]
gi|424235941|ref|ZP_17889914.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA25]
gi|424313528|ref|ZP_17895821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA28]
gi|424449871|ref|ZP_17901645.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA32]
gi|424456040|ref|ZP_17907268.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA33]
gi|424462346|ref|ZP_17912917.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA39]
gi|424468744|ref|ZP_17918658.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA41]
gi|424475329|ref|ZP_17924738.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA42]
gi|424481071|ref|ZP_17930113.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW07945]
gi|424487250|ref|ZP_17935877.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09098]
gi|424493657|ref|ZP_17941563.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09195]
gi|424500514|ref|ZP_17947514.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4203]
gi|424506669|ref|ZP_17953182.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4196]
gi|424514156|ref|ZP_17958934.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW14313]
gi|424520446|ref|ZP_17964640.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW14301]
gi|424526355|ref|ZP_17970139.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4421]
gi|424532519|ref|ZP_17975924.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4422]
gi|424538522|ref|ZP_17981539.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4013]
gi|424544488|ref|ZP_17987012.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4402]
gi|424550754|ref|ZP_17992701.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4439]
gi|424557000|ref|ZP_17998477.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4436]
gi|424563348|ref|ZP_18004406.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4437]
gi|424569420|ref|ZP_18010071.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4448]
gi|424575546|ref|ZP_18015719.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1845]
gi|424581405|ref|ZP_18021127.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1863]
gi|425098253|ref|ZP_18501047.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3.4870]
gi|425104433|ref|ZP_18506798.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5.2239]
gi|425110262|ref|ZP_18512259.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
6.0172]
gi|425126052|ref|ZP_18527316.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0586]
gi|425131908|ref|ZP_18532811.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.2524]
gi|425138276|ref|ZP_18538745.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0833]
gi|425144234|ref|ZP_18544295.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0869]
gi|425150302|ref|ZP_18549983.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.0221]
gi|425156147|ref|ZP_18555474.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA34]
gi|425162659|ref|ZP_18561598.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA506]
gi|425168332|ref|ZP_18566878.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA507]
gi|425174422|ref|ZP_18572593.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA504]
gi|425180363|ref|ZP_18578143.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1999]
gi|425186599|ref|ZP_18583958.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1997]
gi|425193469|ref|ZP_18590318.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE1487]
gi|425199858|ref|ZP_18596176.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE037]
gi|425206306|ref|ZP_18602186.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK2001]
gi|425212043|ref|ZP_18607529.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA4]
gi|425218172|ref|ZP_18613218.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA23]
gi|425224688|ref|ZP_18619251.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA49]
gi|425230922|ref|ZP_18625050.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA45]
gi|425237072|ref|ZP_18630831.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TT12B]
gi|425243134|ref|ZP_18636514.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
MA6]
gi|425249293|ref|ZP_18642289.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5905]
gi|425255064|ref|ZP_18647657.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
CB7326]
gi|425261358|ref|ZP_18653445.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC96038]
gi|425267397|ref|ZP_18659081.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5412]
gi|425294851|ref|ZP_18685135.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA38]
gi|425311537|ref|ZP_18700782.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1735]
gi|425317464|ref|ZP_18706317.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1736]
gi|425323569|ref|ZP_18712002.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1737]
gi|425329732|ref|ZP_18717699.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1846]
gi|425335899|ref|ZP_18723389.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1847]
gi|425342325|ref|ZP_18729305.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1848]
gi|425348136|ref|ZP_18734708.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1849]
gi|425354437|ref|ZP_18740582.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1850]
gi|425360409|ref|ZP_18746142.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1856]
gi|425366535|ref|ZP_18751821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1862]
gi|425372956|ref|ZP_18757691.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1864]
gi|425385781|ref|ZP_18769429.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1866]
gi|425392470|ref|ZP_18775669.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1868]
gi|425398625|ref|ZP_18781414.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1869]
gi|425411234|ref|ZP_18793077.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE098]
gi|425417541|ref|ZP_18798886.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK523]
gi|425428796|ref|ZP_18809490.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1304]
gi|428947155|ref|ZP_19019542.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.1467]
gi|428953392|ref|ZP_19025241.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.1042]
gi|428959313|ref|ZP_19030693.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
89.0511]
gi|428965766|ref|ZP_19036623.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.0091]
gi|428971669|ref|ZP_19042088.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.0039]
gi|428978192|ref|ZP_19048081.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.2281]
gi|428984004|ref|ZP_19053459.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93.0055]
gi|428990138|ref|ZP_19059185.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93.0056]
gi|428995912|ref|ZP_19064593.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
94.0618]
gi|429002033|ref|ZP_19070273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0183]
gi|429008283|ref|ZP_19075885.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.1288]
gi|429014768|ref|ZP_19081737.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0943]
gi|429020712|ref|ZP_19087287.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0428]
gi|429026683|ref|ZP_19092778.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0427]
gi|429032759|ref|ZP_19098365.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0939]
gi|429038903|ref|ZP_19104093.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0932]
gi|429044934|ref|ZP_19109701.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0107]
gi|429050387|ref|ZP_19114987.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0003]
gi|429055624|ref|ZP_19120017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.1742]
gi|429061269|ref|ZP_19125336.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0007]
gi|429067360|ref|ZP_19130906.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0672]
gi|429073365|ref|ZP_19136656.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0678]
gi|429078690|ref|ZP_19141854.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0713]
gi|429826609|ref|ZP_19357745.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0109]
gi|429832883|ref|ZP_19363363.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0010]
gi|444925049|ref|ZP_21244455.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
09BKT078844]
gi|444930900|ref|ZP_21249986.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0814]
gi|444936192|ref|ZP_21255030.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0815]
gi|444941826|ref|ZP_21260400.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0816]
gi|444947470|ref|ZP_21265825.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0839]
gi|444953019|ref|ZP_21271160.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0848]
gi|444958525|ref|ZP_21276425.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1753]
gi|444963690|ref|ZP_21281349.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1775]
gi|444969573|ref|ZP_21286980.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1793]
gi|444974914|ref|ZP_21292096.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1805]
gi|444980409|ref|ZP_21297352.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ATCC 700728]
gi|444985731|ref|ZP_21302546.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA11]
gi|444991016|ref|ZP_21307698.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA19]
gi|444996217|ref|ZP_21312756.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA13]
gi|445001851|ref|ZP_21318269.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA2]
gi|445007314|ref|ZP_21323597.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA47]
gi|445012429|ref|ZP_21328570.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA48]
gi|445018168|ref|ZP_21334163.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA8]
gi|445023819|ref|ZP_21339677.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
7.1982]
gi|445029060|ref|ZP_21344772.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1781]
gi|445034503|ref|ZP_21350065.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1762]
gi|445040220|ref|ZP_21355626.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA35]
gi|445045340|ref|ZP_21360632.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3.4880]
gi|445050938|ref|ZP_21366032.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0083]
gi|445056748|ref|ZP_21371637.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0670]
gi|146325690|sp|Q8XCL9.2|RSMF_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725334|sp|B5YQX9.1|RSMF_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|187767061|gb|EDU30905.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4196]
gi|188999444|gb|EDU68430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4076]
gi|189354637|gb|EDU73056.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4401]
gi|189367398|gb|EDU85814.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4501]
gi|189372082|gb|EDU90498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC869]
gi|208731184|gb|EDZ79873.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4045]
gi|208741443|gb|EDZ89125.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4042]
gi|209161109|gb|ACI38542.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4115]
gi|254592859|gb|ACT72220.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
gi|320188535|gb|EFW63197.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC1212]
gi|320641687|gb|EFX11075.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. G5101]
gi|320647046|gb|EFX15879.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H- str. 493-89]
gi|320652329|gb|EFX20627.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H- str. H 2687]
gi|320657930|gb|EFX25692.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320658503|gb|EFX26197.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. USDA 5905]
gi|320668402|gb|EFX35229.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. LSU-61]
gi|377894903|gb|EHU59316.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3A]
gi|377895696|gb|EHU60107.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3B]
gi|377906653|gb|EHU70895.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3C]
gi|377911988|gb|EHU76153.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3D]
gi|377914712|gb|EHU78834.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3E]
gi|377923343|gb|EHU87310.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3F]
gi|377928370|gb|EHU92281.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4A]
gi|377932943|gb|EHU96789.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4B]
gi|377943793|gb|EHV07502.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4C]
gi|377944677|gb|EHV08379.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4D]
gi|377949959|gb|EHV13590.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4E]
gi|377958905|gb|EHV22417.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4F]
gi|377968860|gb|EHV32251.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5B]
gi|390645077|gb|EIN24261.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA517]
gi|390645270|gb|EIN24453.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1996]
gi|390645951|gb|EIN25089.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA505]
gi|390663541|gb|EIN41037.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93-001]
gi|390664878|gb|EIN42206.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1985]
gi|390665972|gb|EIN43178.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1990]
gi|390681532|gb|EIN57325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA3]
gi|390684575|gb|EIN60186.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA5]
gi|390685555|gb|EIN61025.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA9]
gi|390701404|gb|EIN75628.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA10]
gi|390703016|gb|EIN77067.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA15]
gi|390703753|gb|EIN77748.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA14]
gi|390715658|gb|EIN88494.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA22]
gi|390726858|gb|EIN99286.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA25]
gi|390727309|gb|EIN99726.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA24]
gi|390729496|gb|EIO01656.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA28]
gi|390745141|gb|EIO15961.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA32]
gi|390745979|gb|EIO16754.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA31]
gi|390747499|gb|EIO18052.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA33]
gi|390759379|gb|EIO28777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA40]
gi|390769862|gb|EIO38758.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA41]
gi|390771440|gb|EIO40120.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA39]
gi|390771843|gb|EIO40498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA42]
gi|390782669|gb|EIO50303.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW06591]
gi|390791177|gb|EIO58572.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW10246]
gi|390797043|gb|EIO64309.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW07945]
gi|390798379|gb|EIO65575.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW11039]
gi|390808557|gb|EIO75396.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09109]
gi|390809701|gb|EIO76483.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09098]
gi|390816824|gb|EIO83284.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW10119]
gi|390829173|gb|EIO94781.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4203]
gi|390832383|gb|EIO97639.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09195]
gi|390833989|gb|EIO98965.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4196]
gi|390848934|gb|EIP12382.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW14301]
gi|390850617|gb|EIP13978.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW14313]
gi|390852296|gb|EIP15465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4421]
gi|390863608|gb|EIP25740.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4422]
gi|390867969|gb|EIP29735.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4013]
gi|390873673|gb|EIP34854.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4402]
gi|390880628|gb|EIP41304.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4439]
gi|390885081|gb|EIP45330.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4436]
gi|390896525|gb|EIP55911.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4437]
gi|390900523|gb|EIP59742.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4448]
gi|390901041|gb|EIP60225.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1738]
gi|390908761|gb|EIP67562.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1734]
gi|390921216|gb|EIP79439.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1863]
gi|390922106|gb|EIP80214.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1845]
gi|408067100|gb|EKH01543.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA7]
gi|408070881|gb|EKH05237.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK920]
gi|408076210|gb|EKH10438.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA34]
gi|408081984|gb|EKH15976.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA506]
gi|408084454|gb|EKH18226.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA507]
gi|408093220|gb|EKH26319.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA504]
gi|408099090|gb|EKH31744.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1999]
gi|408106904|gb|EKH38995.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1997]
gi|408110645|gb|EKH42432.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE1487]
gi|408118052|gb|EKH49226.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE037]
gi|408123574|gb|EKH54313.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK2001]
gi|408129592|gb|EKH59811.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA4]
gi|408141017|gb|EKH70497.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA23]
gi|408142730|gb|EKH72079.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA49]
gi|408147825|gb|EKH76734.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA45]
gi|408156170|gb|EKH84377.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TT12B]
gi|408163293|gb|EKH91160.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
MA6]
gi|408165714|gb|EKH93391.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5905]
gi|408176842|gb|EKI03675.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
CB7326]
gi|408183588|gb|EKI10013.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC96038]
gi|408184418|gb|EKI10741.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5412]
gi|408220370|gb|EKI44426.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA38]
gi|408229729|gb|EKI53156.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1735]
gi|408241087|gb|EKI63737.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1736]
gi|408245145|gb|EKI67538.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1737]
gi|408249524|gb|EKI71454.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1846]
gi|408260010|gb|EKI81145.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1847]
gi|408261993|gb|EKI82946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1848]
gi|408267643|gb|EKI88090.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1849]
gi|408277629|gb|EKI97416.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1850]
gi|408279883|gb|EKI99466.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1856]
gi|408291533|gb|EKJ10130.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1862]
gi|408293872|gb|EKJ12293.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1864]
gi|408310842|gb|EKJ27883.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1868]
gi|408311346|gb|EKJ28356.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1866]
gi|408323585|gb|EKJ39547.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1869]
gi|408328146|gb|EKJ43763.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE098]
gi|408338947|gb|EKJ53567.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK523]
gi|408348739|gb|EKJ62820.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1304]
gi|408551745|gb|EKK28983.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5.2239]
gi|408552556|gb|EKK29728.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3.4870]
gi|408553125|gb|EKK30256.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
6.0172]
gi|408574331|gb|EKK50108.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0586]
gi|408582448|gb|EKK57663.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0833]
gi|408583114|gb|EKK58292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.2524]
gi|408594695|gb|EKK68976.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0869]
gi|408598260|gb|EKK72219.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.0221]
gi|408613650|gb|EKK86937.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0821]
gi|427207688|gb|EKV77856.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.1042]
gi|427209349|gb|EKV79388.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
89.0511]
gi|427210622|gb|EKV80477.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.1467]
gi|427226374|gb|EKV94964.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.2281]
gi|427226655|gb|EKV95244.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.0091]
gi|427229636|gb|EKV97950.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.0039]
gi|427244819|gb|EKW12128.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93.0056]
gi|427245468|gb|EKW12752.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93.0055]
gi|427247677|gb|EKW14729.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
94.0618]
gi|427263496|gb|EKW29254.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0943]
gi|427264379|gb|EKW30066.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0183]
gi|427266321|gb|EKW31770.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.1288]
gi|427278696|gb|EKW43152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0428]
gi|427282542|gb|EKW46787.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0427]
gi|427285121|gb|EKW49124.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0939]
gi|427294357|gb|EKW57542.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0932]
gi|427301513|gb|EKW64375.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0107]
gi|427301806|gb|EKW64660.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0003]
gi|427315647|gb|EKW77636.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.1742]
gi|427317812|gb|EKW79703.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0007]
gi|427322418|gb|EKW84051.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0672]
gi|427330151|gb|EKW91429.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0678]
gi|427330547|gb|EKW91817.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0713]
gi|429255226|gb|EKY39561.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0109]
gi|429256999|gb|EKY41102.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0010]
gi|444539994|gb|ELV19701.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0814]
gi|444542797|gb|ELV22133.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
09BKT078844]
gi|444548783|gb|ELV27139.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0815]
gi|444559862|gb|ELV37063.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0839]
gi|444561787|gb|ELV38890.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0816]
gi|444565886|gb|ELV42729.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0848]
gi|444575328|gb|ELV51570.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1753]
gi|444579521|gb|ELV55507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1775]
gi|444581713|gb|ELV57551.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1793]
gi|444595311|gb|ELV70415.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA11]
gi|444595491|gb|ELV70593.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ATCC 700728]
gi|444598218|gb|ELV73154.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1805]
gi|444609137|gb|ELV83596.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA19]
gi|444609508|gb|ELV83966.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA13]
gi|444617410|gb|ELV91526.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA2]
gi|444626319|gb|ELW00115.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA47]
gi|444626700|gb|ELW00492.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA48]
gi|444631880|gb|ELW05463.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA8]
gi|444641171|gb|ELW14410.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
7.1982]
gi|444644106|gb|ELW17230.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1781]
gi|444647379|gb|ELW20353.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1762]
gi|444655991|gb|ELW28527.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA35]
gi|444662806|gb|ELW35058.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3.4880]
gi|444667615|gb|ELW39649.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0083]
gi|444671001|gb|ELW42840.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0670]
Length = 479
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPTP 320
>gi|421812516|ref|ZP_16248263.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0416]
gi|408602296|gb|EKK76017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0416]
Length = 479
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKEAYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPTP 320
>gi|331657881|ref|ZP_08358843.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA206]
gi|416337559|ref|ZP_11673922.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
WV_060327]
gi|419700627|ref|ZP_14228233.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SCI-07]
gi|320194451|gb|EFW69082.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
WV_060327]
gi|331056129|gb|EGI28138.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA206]
gi|380348403|gb|EIA36685.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SCI-07]
Length = 479
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 173/317 (54%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|213615624|ref|ZP_03371450.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 418
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 347 S---LPAMPAPGYKV 358
>gi|416651666|ref|ZP_11811183.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|418486671|ref|ZP_13055621.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|418493689|ref|ZP_13060151.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|418497648|ref|ZP_13064065.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|418502380|ref|ZP_13068752.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|418527679|ref|ZP_13093635.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|366063834|gb|EHN28045.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|366073117|gb|EHN37194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|366075405|gb|EHN39462.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|366075736|gb|EHN39788.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|366827413|gb|EHN54319.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|372204307|gb|EHP17835.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
Length = 479
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 167/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDNAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>gi|416570776|ref|ZP_11766271.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|363575229|gb|EHL59087.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
Length = 513
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEDALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDNAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|433198395|ref|ZP_20382307.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE94]
gi|431723061|gb|ELJ87023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE94]
Length = 481
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 173/317 (54%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVTDFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|416421608|ref|ZP_11689606.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|416433683|ref|ZP_11697106.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|416436504|ref|ZP_11698306.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|416448964|ref|ZP_11706615.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|416451132|ref|ZP_11708025.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|416456454|ref|ZP_11711458.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|416468962|ref|ZP_11718256.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|416481673|ref|ZP_11723407.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416498117|ref|ZP_11730043.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416504757|ref|ZP_11733339.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|416512103|ref|ZP_11737647.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|416541678|ref|ZP_11751110.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|416562527|ref|ZP_11762227.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|416579253|ref|ZP_11771111.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|416585123|ref|ZP_11774676.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|416589989|ref|ZP_11777505.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|416601182|ref|ZP_11784846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|416604407|ref|ZP_11786167.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|416612082|ref|ZP_11791261.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|416619450|ref|ZP_11795112.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|416629427|ref|ZP_11800091.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|416639198|ref|ZP_11804405.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|416666375|ref|ZP_11817449.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|416680836|ref|ZP_11823447.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|416698498|ref|ZP_11828429.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|416704964|ref|ZP_11830576.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|416710950|ref|ZP_11834908.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|416716817|ref|ZP_11839109.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|416721953|ref|ZP_11843012.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|416733534|ref|ZP_11850532.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|416737341|ref|ZP_11852573.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|416762252|ref|ZP_11866248.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|416771620|ref|ZP_11872855.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|418484129|ref|ZP_13053133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|418509461|ref|ZP_13075755.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|322616846|gb|EFY13754.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618085|gb|EFY14977.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625756|gb|EFY22575.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322626206|gb|EFY23016.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633812|gb|EFY30552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322638966|gb|EFY35659.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322640784|gb|EFY37434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322644171|gb|EFY40716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322655402|gb|EFY51710.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322660842|gb|EFY57073.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322662861|gb|EFY59068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668045|gb|EFY64204.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674193|gb|EFY70287.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322675452|gb|EFY71526.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322683133|gb|EFY79149.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322686827|gb|EFY82805.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323195281|gb|EFZ80461.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323199174|gb|EFZ84269.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203806|gb|EFZ88825.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323217413|gb|EGA02132.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323220550|gb|EGA05001.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323224660|gb|EGA08933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323231436|gb|EGA15549.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235876|gb|EGA19955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240445|gb|EGA24488.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323245338|gb|EGA29338.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323246705|gb|EGA30677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323253560|gb|EGA37388.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323266811|gb|EGA50297.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269017|gb|EGA52473.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|363557205|gb|EHL41412.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|363570037|gb|EHL53976.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|363572858|gb|EHL56746.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|366059914|gb|EHN24181.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|366078168|gb|EHN42173.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
Length = 513
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 167/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEDALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDNAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 347 S---LPAMPAPGYKV 358
>gi|415842427|ref|ZP_11523101.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
RN587/1]
gi|417283711|ref|ZP_12071008.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3003]
gi|425278078|ref|ZP_18669342.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ARS4.2123]
gi|323186840|gb|EFZ72159.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
RN587/1]
gi|386243654|gb|EII85387.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3003]
gi|408202863|gb|EKI27921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ARS4.2123]
Length = 479
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|15802248|ref|NP_288272.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. EDL933]
gi|15831799|ref|NP_310572.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. Sakai]
gi|195939736|ref|ZP_03085118.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. EC4024]
gi|387882943|ref|YP_006313245.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
Xuzhou21]
gi|12515885|gb|AAG56825.1|AE005406_4 putative nucleolar proteins [Escherichia coli O157:H7 str. EDL933]
gi|13362013|dbj|BAB35968.1| putative rRNA methylase [Escherichia coli O157:H7 str. Sakai]
gi|209767728|gb|ACI82176.1| putative rRNA methylase [Escherichia coli]
gi|209767730|gb|ACI82177.1| putative rRNA methylase [Escherichia coli]
gi|209767732|gb|ACI82178.1| putative rRNA methylase [Escherichia coli]
gi|209767736|gb|ACI82180.1| putative rRNA methylase [Escherichia coli]
gi|386796401|gb|AFJ29435.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
Xuzhou21]
Length = 481
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 312 K---TQAIPALPTP 322
>gi|432882072|ref|ZP_20098152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE154]
gi|431411578|gb|ELG94689.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE154]
Length = 481
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 173/321 (53%), Gaps = 38/321 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCMW-LKETYPDAVEFLPLGELFPAANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQPSETV 399
+L+K ++ A P P+ V
Sbjct: 309 RLRK---TQAIPALPTPTYKV 326
>gi|213419894|ref|ZP_03352960.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 371
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|425288712|ref|ZP_18679580.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3006]
gi|425305384|ref|ZP_18695126.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
N1]
gi|408214880|gb|EKI39288.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3006]
gi|408229366|gb|EKI52798.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
N1]
Length = 479
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 173/321 (53%), Gaps = 38/321 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCMW-LKETYPDAVEFLPLGELFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQPSETV 399
+L+K ++ A P P+ V
Sbjct: 307 RLRK---TQAIPALPTPTYKV 324
>gi|422381587|ref|ZP_16461751.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
57-2]
gi|432616799|ref|ZP_19852920.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE75]
gi|432732521|ref|ZP_19967354.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE45]
gi|432759605|ref|ZP_19994100.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE46]
gi|324007208|gb|EGB76427.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
57-2]
gi|431155039|gb|ELE55800.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE75]
gi|431275708|gb|ELF66735.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE45]
gi|431308778|gb|ELF97057.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE46]
Length = 481
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 173/317 (54%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|218689772|ref|YP_002397984.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
ED1a]
gi|254766865|sp|B7MVW5.1|RSMF_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218427336|emb|CAR08231.2| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
ED1a]
Length = 479
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|417333243|ref|ZP_12116865.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Alachua str. R6-377]
gi|353579208|gb|EHC40821.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Alachua str. R6-377]
Length = 464
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 13 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 132 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 191 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 245
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 246 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 297
Query: 385 N 385
+
Sbjct: 298 S 298
>gi|125975638|ref|YP_001039548.1| NOL1/NOP2/sun family RNA methylase [Clostridium thermocellum ATCC
27405]
gi|256003627|ref|ZP_05428616.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
2360]
gi|281416646|ref|ZP_06247666.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum JW20]
gi|385778075|ref|YP_005687240.1| RNA methylase [Clostridium thermocellum DSM 1313]
gi|419723872|ref|ZP_14250976.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum AD2]
gi|419724779|ref|ZP_14251837.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum YS]
gi|125715863|gb|ABN54355.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum ATCC
27405]
gi|255992418|gb|EEU02511.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
2360]
gi|281408048|gb|EFB38306.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum JW20]
gi|316939755|gb|ADU73789.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
1313]
gi|380771818|gb|EIC05680.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum YS]
gi|380780107|gb|EIC09801.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum AD2]
Length = 456
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 160/303 (52%), Gaps = 20/303 (6%)
Query: 85 MFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144
+F E E ++S++ PR LR NTLK + + L+P+ W+K G +
Sbjct: 14 LFDAGEFEEFLKSYDMPRFYGLRVNTLKIGVEEFKKL---SPFELEPIP-WTKDGFYYNE 69
Query: 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+ P G P Y AG Y +Q S+ LP + +E + V+D+ AAPGGKT +AA MK G
Sbjct: 70 GENP-GKHPYYHAGLYYIQEPSAMLPGAVINAEEGDYVLDLCAAPGGKTVQMAAGMKGKG 128
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
L+ AN++ + R+K+L N+ G+TN IV N + L K L DR+L+DAPCSG G+
Sbjct: 129 LLIANDISSDRVKALVKNIELCGITNAIVTNESPDRLAKKL-CAFFDRILVDAPCSGEGM 187
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
KDE S KC +Q++++ +A D K GGY+VYSTC+ ENE +I
Sbjct: 188 FRKDEDAAKSWGKFKCDKCCAMQREILESA----DVMLKPGGYLVYSTCTFSPEENEGMI 243
Query: 325 DYAL---KKRDVKLVP--CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
L K D+ +P G+D GR + + L KT R +PH +G FVA
Sbjct: 244 SEFLSRHKNYDILEIPKAYGIDNGRPEWWDNNKE-----LLKTARIWPHKVRGEGHFVAL 298
Query: 380 LKK 382
LKK
Sbjct: 299 LKK 301
>gi|417517886|ref|ZP_12180373.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|353650593|gb|EHC92914.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
Length = 513
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ++V+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQQVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|300917592|ref|ZP_07134245.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
115-1]
gi|432531210|ref|ZP_19768239.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE233]
gi|300415192|gb|EFJ98502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
115-1]
gi|431054438|gb|ELD64008.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE233]
Length = 481
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 173/321 (53%), Gaps = 38/321 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCMW-LKETYPDAVEFLPLGELFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQPSETV 399
+L+K ++ A P P+ V
Sbjct: 309 RLRK---TQAIPALPTPTYKV 326
>gi|222156579|ref|YP_002556718.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
LF82]
gi|387617172|ref|YP_006120194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O83:H1 str. NRG 857C]
gi|222033584|emb|CAP76325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
LF82]
gi|312946433|gb|ADR27260.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O83:H1 str. NRG 857C]
Length = 481
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVTDFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|312969872|ref|ZP_07784055.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
1827-70]
gi|257096804|sp|A8A133.2|RSMF_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096805|sp|B1J0Q3.2|RSMF_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|310338157|gb|EFQ03246.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
1827-70]
Length = 479
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCMW-LKETYPDAVEFLPLGELFPAANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|398796683|ref|ZP_10556170.1| NOL1/NOP2/sun family putative RNA methylase [Pantoea sp. YR343]
gi|398202685|gb|EJM89524.1| NOL1/NOP2/sun family putative RNA methylase [Pantoea sp. YR343]
Length = 474
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 167/318 (52%), Gaps = 25/318 (7%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQ 146
EL + ++P LR NTLK D N G L P+ W G + D
Sbjct: 23 AELQRFLAISQQPLRRSLRVNTLKISVEDFLARTANYGWRLSPI-PWCAEGFWIERDDES 81
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+P+G+ E+++G + +Q ASS LPV AL A + +V+D+AAAPG KTT +AALM+N G
Sbjct: 82 LPLGSVAEHLSGLFYIQEASSMLPVTALFDAAPDARQVMDVAAAPGSKTTQMAALMRNEG 141
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R GV+N + ++DG L D +LLDAPCSG GV
Sbjct: 142 AILANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP-ERFDAILLDAPCSGEGV 200
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + +L + + Q+ L+ +A + + GG ++YSTC++ EN+ VI
Sbjct: 201 VRKDADALRNWTLASTEAIAETQRDLLDSAFHAL----QPGGTLIYSTCTLNQIENQQVI 256
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ L++R V++VP F E H +P + + +GFFVA+L+
Sbjct: 257 HW-LQQRYPDAVEIVPLNGLFAGADQALTAEGFLH--------VFPQIFDSEGFFVARLR 307
Query: 382 KMSNSKKTSAGPQPSETV 399
K ++ A P P+ V
Sbjct: 308 KTAS---IPALPTPTYKV 322
>gi|215487048|ref|YP_002329479.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O127:H6 str. E2348/69]
gi|312967035|ref|ZP_07781253.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2362-75]
gi|417755879|ref|ZP_12403963.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2B]
gi|418997111|ref|ZP_13544711.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1A]
gi|419002230|ref|ZP_13549767.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1B]
gi|419007886|ref|ZP_13555326.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1C]
gi|419018495|ref|ZP_13565806.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1E]
gi|419024139|ref|ZP_13571370.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2A]
gi|419029187|ref|ZP_13576359.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2C]
gi|419034631|ref|ZP_13581722.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2D]
gi|419039783|ref|ZP_13586824.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2E]
gi|254766863|sp|B7USL2.1|RSMF_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|215265120|emb|CAS09508.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|312288499|gb|EFR16401.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2362-75]
gi|377845728|gb|EHU10750.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1A]
gi|377846395|gb|EHU11407.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1C]
gi|377850161|gb|EHU15129.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1B]
gi|377862225|gb|EHU27038.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1E]
gi|377865620|gb|EHU30411.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2A]
gi|377876130|gb|EHU40738.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2B]
gi|377880225|gb|EHU44796.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2C]
gi|377881701|gb|EHU46258.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2D]
gi|377894034|gb|EHU58459.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2E]
Length = 479
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|422368318|ref|ZP_16448730.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
16-3]
gi|432898806|ref|ZP_20109498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE192]
gi|433028760|ref|ZP_20216622.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE109]
gi|315299940|gb|EFU59178.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
16-3]
gi|431426458|gb|ELH08502.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE192]
gi|431543869|gb|ELI18835.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE109]
Length = 481
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|301026587|ref|ZP_07190010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
69-1]
gi|419916440|ref|ZP_14434747.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD2]
gi|300395420|gb|EFJ78958.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
69-1]
gi|388395891|gb|EIL57026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD2]
Length = 481
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 168/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 RW-LKETYPDAVEFLPLGNLFPGADKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQP 395
K +K A P P
Sbjct: 312 K---TKAIPALPAP 322
>gi|432465820|ref|ZP_19707911.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE205]
gi|432583974|ref|ZP_19820373.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE57]
gi|432894650|ref|ZP_20106471.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE165]
gi|433072942|ref|ZP_20259607.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE129]
gi|433120372|ref|ZP_20306050.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE157]
gi|433183391|ref|ZP_20367656.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE85]
gi|430994301|gb|ELD10632.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE205]
gi|431116293|gb|ELE19741.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE57]
gi|431422563|gb|ELH04755.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE165]
gi|431589063|gb|ELI60282.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE129]
gi|431643467|gb|ELJ11159.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE157]
gi|431707863|gb|ELJ72392.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE85]
Length = 481
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|327401876|ref|YP_004342715.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6]
gi|327317384|gb|AEA48000.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6]
Length = 308
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 152/292 (52%), Gaps = 10/292 (3%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQVPIGA 151
E E KP +R NTLK D+ L++ ++P+ W + G + D IG
Sbjct: 23 EFSEFMSKPLRPSIRVNTLKGSLEDIVS-LLSEKYKIEPVP-WCREGFFIDIDEDSSIGT 80
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
+ E+ G Q ASS +P + L + V+DMAAAPG KTT IA M+N G I AN++
Sbjct: 81 SIEHQLGLIFSQEASSMIPPVVLDVKPGMLVLDMAAAPGAKTTQIAQYMQNEGCIIANDV 140
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
K RL L +NL R GV V DG K NT D VLLDAPCS G+I K+
Sbjct: 141 KVGRLNILISNLQRCGVLIARVTMMDGRSFRKY--ENTFDAVLLDAPCSNAGMIRKNYKY 198
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
L+D++ S LQKQLI+AA A K GG +VYSTC++ ENE V+D+ L
Sbjct: 199 LKIWRLKDVESLSRLQKQLIMAAY----AALKPGGVLVYSTCTLDPAENEDVVDHLLANT 254
Query: 332 DVKLVPCGLDFGRQG-FVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
D +L L R F F F ++K R +P ++ +GFFVAK+ K
Sbjct: 255 DARLEEIDLPVKRHKPFTSFDGKEFSSEVKKCLRIHPQDNDTEGFFVAKIVK 306
>gi|188025255|ref|ZP_02997418.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4113]
gi|189406265|ref|ZP_02827395.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC508]
gi|208810551|ref|ZP_03252427.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4206]
gi|416312347|ref|ZP_11657548.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. 1044]
gi|452968413|ref|ZP_21966640.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. EC4009]
gi|188013980|gb|EDU52102.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4113]
gi|189375610|gb|EDU94026.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC508]
gi|208725067|gb|EDZ74774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4206]
gi|326342214|gb|EGD65995.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. 1044]
Length = 506
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 55 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 113
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 114 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 170
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 171 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 229
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 230 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 285
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 286 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 336
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 337 K---TQAIPALPTP 347
>gi|304396187|ref|ZP_07378069.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. aB]
gi|304356556|gb|EFM20921.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. aB]
Length = 547
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 165/305 (54%), Gaps = 28/305 (9%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
+ I ++P +R NTLK D G L P+ W + G + D +P
Sbjct: 98 FAQFIAYSQQPLRRSIRVNTLKISVADFLSQTAGYGWQLTPV-PWCEEGFWISREDESLP 156
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLI 206
+G+ E+++G + +Q ASS LPV AL + E V+DMAAAPG KTT IAA M N G+I
Sbjct: 157 LGSVAEHLSGLFYIQEASSMLPVTALFDTQPEVSAVMDMAAAPGSKTTQIAARMGNQGVI 216
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SR+K L AN+ R GV+N+ + ++D G LP+ D +LLDAPCSG
Sbjct: 217 LANEFSSSRVKVLHANISRCGVSNSALTHFDARVFGPALPE-----QFDAILLDAPCSGE 271
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
GVI KD + SL + + Q+ L+ +A + K+GG +VYSTC++ EN+
Sbjct: 272 GVIRKDADALKNWSLASTEAIADTQRDLLDSAFHAL----KAGGTLVYSTCTLNQIENQQ 327
Query: 323 VIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
VID+ L++ V++VP +G E P E +P + + +GFFVA+L
Sbjct: 328 VIDWLLQRYPDAVEVVPL------EGLFSGAEKAATP--EGYLHVFPQMFDSEGFFVARL 379
Query: 381 KKMSN 385
+K ++
Sbjct: 380 RKTAS 384
>gi|145299018|ref|YP_001141859.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas salmonicida
subsp. salmonicida A449]
gi|418357620|ref|ZP_12960312.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas salmonicida
subsp. salmonicida 01-B526]
gi|167012765|sp|A4SMI9.1|RSMF_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|142851790|gb|ABO90111.1| Sun/nucleolar protein family protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689209|gb|EHI53755.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas salmonicida
subsp. salmonicida 01-B526]
Length = 476
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 165/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV--YDSQVPIG 150
E + S +P +R NTLK D + G D + W + G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKISVSDFVMQMQPLGWQFDAV-PWCETGFWLTRADESVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL ++ + ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSQQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V L+K L LD F E P E +P + + +GFFVA+L+K
Sbjct: 257 VCQSLLEKFGDALT---LDSLADLFPN-AEQACTP--EGYLHVWPQIFDSEGFFVARLRK 310
Query: 383 MSNSKKTSAGP 393
+ T P
Sbjct: 311 HHSVPNTMFKP 321
>gi|437650123|ref|ZP_20809752.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|435267930|gb|ELO46567.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
Length = 462
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 11 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 69
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 70 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 129
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 130 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 188
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 189 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 243
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 244 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 295
Query: 385 N 385
+
Sbjct: 296 S 296
>gi|421885200|ref|ZP_16316401.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|379985262|emb|CCF88674.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
Length = 464
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 13 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 132 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 191 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLWL 246
Query: 328 LKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ V+ +P G F E H +P +++ +GFFVA+L+KMS+
Sbjct: 247 QETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS 298
>gi|294141339|ref|YP_003557317.1| NOL1/NOP2/sun family protein [Shewanella violacea DSS12]
gi|293327808|dbj|BAJ02539.1| NOL1/NOP2/sun family protein [Shewanella violacea DSS12]
Length = 478
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 173/315 (54%), Gaps = 16/315 (5%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I ++ + P + + + I+ +P +R NTLK + +++ +G L+ +
Sbjct: 5 NQDFIDSITQDMPAHLSMDDFIQYSSRPLRASIRVNTLKISSANFIELMQPKGWTLESIP 64
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAP 189
S + DS+V +G T E++ G + +Q ASS LP AL Q E ++DMA+AP
Sbjct: 65 WCSDGFWISLDSEVQLGNTIEHLQGLFYIQEASSMLPPTALFSQLNETANVTILDMASAP 124
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT +AALM N+GL+ ANE +SR+K L AN+ RMGVTNT + ++D + L +T
Sbjct: 125 GSKTTQLAALMNNSGLLIANEYSSSRVKVLHANVQRMGVTNTALTHFDARVFGEYL-YDT 183
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D +LLDAPCSG G I KD S + SL+ Q QK LI +A + K+GG +V
Sbjct: 184 FDAILLDAPCSGEGTIRKDPSALKNWSLKSSQAIVATQKALIESAFLAL----KTGGTLV 239
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTC++ EN+ V + + P ++F + F + + E +P +
Sbjct: 240 YSTCALSRFENQEVCQHL-----QAIYPDAVEFESLSDL-FIDADKACTEEGFLHVWPQI 293
Query: 370 HNMDGFFVAKLKKMS 384
++ +GFFVAK++K +
Sbjct: 294 YDSEGFFVAKIRKTA 308
>gi|189403504|ref|ZP_03007106.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4486]
gi|217328807|ref|ZP_03444888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. TW14588]
gi|416327317|ref|ZP_11667324.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. 1125]
gi|189360318|gb|EDU78737.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4486]
gi|217318154|gb|EEC26581.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. TW14588]
gi|326343764|gb|EGD67526.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. 1125]
Length = 514
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 63 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 121
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 122 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 178
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 179 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 237
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 238 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 293
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 294 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 344
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 345 K---TQAIPALPTP 355
>gi|292488502|ref|YP_003531386.1| ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
CFBP1430]
gi|291553933|emb|CBA20978.1| Ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
CFBP1430]
Length = 462
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 169/324 (52%), Gaps = 25/324 (7%)
Query: 84 EMFPPV-ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV 142
+M P + I ++P LR NTLK D ++ L P+ W G +
Sbjct: 3 QMLPDANDFARFIAISQQPLRRSLRVNTLKISVDDFLQLVKPYQWALTPI-PWCPEGFWI 61
Query: 143 Y---DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIA 197
++P+G+T E++AG + +Q ASS LPV AL +RV+DMAAAPG KTT IA
Sbjct: 62 SRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQRVMDMAAAPGSKTTQIA 121
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257
A M + G I ANE ASR+K L ANL R G++NT + ++DG L D VLLDA
Sbjct: 122 ACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRVFGSALP-ECFDAVLLDA 180
Query: 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317
PCSG GV+ KD + S + + Q+ LI +A + + GG +VYSTC++
Sbjct: 181 PCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHAL----RPGGTLVYSTCTLNR 236
Query: 318 TENEAVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGF 375
+EN+ V+ + L++ V + P F V E H +PH+ + +GF
Sbjct: 237 SENQQVVRWLLEQYPDAVAIEPLNTLFNGAEQVATAEGFLH--------VFPHIFDSEGF 288
Query: 376 FVAKLKKMSNSKKTSAGPQPSETV 399
FVA+L+K+S+ + S QP+ V
Sbjct: 289 FVARLRKVSSVARLS---QPTYKV 309
>gi|416491776|ref|ZP_11727287.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322649242|gb|EFY45680.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
Length = 436
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 167/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEDALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDNAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 347 S---LPAMPAPGYKV 358
>gi|365539493|ref|ZP_09364668.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio ordalii ATCC
33509]
Length = 473
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 18/311 (5%)
Query: 81 ALVEMFPPVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 138
A +E P L + I + ++P +R NTLK +G L P+ W
Sbjct: 13 ATIEAILPTHLTMSDFIAACQRPLRKSIRVNTLKISVDSFCQRAAEKGWVLSPV-PWCNT 71
Query: 139 GLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTT 194
G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT
Sbjct: 72 GFWIEADESVVPLGNTAEHMAGLFYIQEASSMMPVSALFTGGESFNSVLDMAAAPGSKTT 131
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
IAA M+N G++ ANE ASR+K L AN+ R GV N+ + N+DG L D VL
Sbjct: 132 QIAACMENKGVLVANEFSASRVKVLHANIERCGVRNSALSNFDGRVFGGWLP-EQFDAVL 190
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
+DAPCSG G I KD + S E + + QK LI +A + K GG +VYSTC+
Sbjct: 191 IDAPCSGEGTIRKDPDAMKNWSKESVLSIAATQKDLIESAFQAL----KPGGVMVYSTCT 246
Query: 315 IMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ EN+ V + LK++ P ++F + F + + + E +P ++ +G
Sbjct: 247 LSTEENQQVCLH-LKEK----YPQSVEFVSLSSL-FEDAKAAITDEGFLHIFPQTYDCEG 300
Query: 375 FFVAKLKKMSN 385
FFVAK++K+S+
Sbjct: 301 FFVAKIRKLSS 311
>gi|157161302|ref|YP_001458620.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli HS]
gi|170019820|ref|YP_001724774.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli ATCC
8739]
gi|157066982|gb|ABV06237.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli HS]
gi|169754748|gb|ACA77447.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli ATCC 8739]
Length = 481
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCMW-LKETYPDAVEFLPLGELFPAANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|448608995|ref|ZP_21660274.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mucosum ATCC
BAA-1512]
gi|445747372|gb|ELZ98828.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mucosum ATCC
BAA-1512]
Length = 313
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 156/301 (51%), Gaps = 20/301 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+E+ E+ P +R NT+KT + L + GV +P + W G++ ++ P G
Sbjct: 17 FLEACERSLPSVVRVNTIKTTVERAREALDDEGVAYEP-TDWHP-GILKLENSSP-GTNW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL PQ ER+ D AAPG KTT IAA+M + G++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERIWDTCAAPGSKTTQIAAMMDDEGVLIGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELPKVLG-LNTVDRVLLDAPCSGTG 263
RL +L N R+GVTN +V N D G P G DRVL+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNFSMKPFGERTPDKSGSFEQFDRVLVDAPCSCEG 193
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
K+ V ++ + + +QK ++ A+ + +K GG +VYSTC+ ENEAV
Sbjct: 194 TCRKNPDVLDEWTMNHVASVAGIQKGILRRAVQV----TKPGGTVVYSTCTFAPEENEAV 249
Query: 324 IDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+D+ L++ D ++V + G + G + + + S+ RR YPH ++ GFF AKL
Sbjct: 250 LDFVLEREDCEIVAWDVPDGFETAPGITEWEDDEYDSSVTNARRVYPHQNDTGGFFTAKL 309
Query: 381 K 381
+
Sbjct: 310 E 310
>gi|386619403|ref|YP_006138983.1| rRNA cytosine-C5-methyltransferase [Escherichia coli NA114]
gi|333969904|gb|AEG36709.1| rRNA cytosine-C5-methyltransferase [Escherichia coli NA114]
Length = 479
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 166/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|56413232|ref|YP_150307.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197362157|ref|YP_002141794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|81821455|sp|Q5PHN5.1|RSMF_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725345|sp|B5BHA6.1|RSMF_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|56127489|gb|AAV76995.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197093634|emb|CAR59104.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 479
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEDVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>gi|168241450|ref|ZP_02666382.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|198244837|ref|YP_002215291.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205352487|ref|YP_002226288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207856644|ref|YP_002243295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|375118769|ref|ZP_09763936.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|419730494|ref|ZP_14257440.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|419732180|ref|ZP_14259086.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|419739099|ref|ZP_14265853.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|419743839|ref|ZP_14270502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|419750189|ref|ZP_14276655.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|421358704|ref|ZP_15809001.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|421362674|ref|ZP_15812926.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|421367874|ref|ZP_15818067.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|421370459|ref|ZP_15820624.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|421377947|ref|ZP_15828036.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|421382555|ref|ZP_15832601.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|421387717|ref|ZP_15837716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|421391820|ref|ZP_15841786.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|421394976|ref|ZP_15844915.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|421401240|ref|ZP_15851116.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|421403158|ref|ZP_15853012.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|421410525|ref|ZP_15860306.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|421412790|ref|ZP_15862544.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|421416783|ref|ZP_15866502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|421421778|ref|ZP_15871446.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|421425947|ref|ZP_15875581.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|421431915|ref|ZP_15881492.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|421436669|ref|ZP_15886196.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|421441269|ref|ZP_15890739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|421446794|ref|ZP_15896206.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|421447903|ref|ZP_15897299.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|421570899|ref|ZP_16016582.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|421574764|ref|ZP_16020385.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|421579629|ref|ZP_16025191.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|421583002|ref|ZP_16028531.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|436675697|ref|ZP_20517622.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|436799090|ref|ZP_20523644.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|436811341|ref|ZP_20530221.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436815713|ref|ZP_20533264.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436847043|ref|ZP_20539675.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851305|ref|ZP_20541904.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858070|ref|ZP_20546590.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865245|ref|ZP_20551212.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875582|ref|ZP_20557489.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436883295|ref|ZP_20561724.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436887844|ref|ZP_20564173.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896366|ref|ZP_20569122.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436906345|ref|ZP_20575191.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911707|ref|ZP_20577536.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436921183|ref|ZP_20583654.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930435|ref|ZP_20588660.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436935659|ref|ZP_20591099.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942848|ref|ZP_20595794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436951658|ref|ZP_20600713.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436964633|ref|ZP_20606269.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436971392|ref|ZP_20609785.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436985461|ref|ZP_20614981.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436991571|ref|ZP_20617582.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437012214|ref|ZP_20624727.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437020815|ref|ZP_20627626.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437029894|ref|ZP_20631076.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437042468|ref|ZP_20636059.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437052368|ref|ZP_20641791.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437058179|ref|ZP_20645026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437069159|ref|ZP_20651114.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437075870|ref|ZP_20654233.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086568|ref|ZP_20660577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437095457|ref|ZP_20664561.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|437116276|ref|ZP_20669624.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|437125918|ref|ZP_20674187.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|437134593|ref|ZP_20679017.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|437139835|ref|ZP_20682099.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|437147025|ref|ZP_20686577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|437155317|ref|ZP_20691536.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|437163123|ref|ZP_20696477.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|437167307|ref|ZP_20698625.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|437177260|ref|ZP_20703740.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|437186348|ref|ZP_20709577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|437250976|ref|ZP_20715290.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|437261235|ref|ZP_20718305.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|437265834|ref|ZP_20720649.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|437282063|ref|ZP_20729064.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|437286500|ref|ZP_20730154.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|437308349|ref|ZP_20735390.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|437331044|ref|ZP_20741872.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|437343962|ref|ZP_20745976.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|437425005|ref|ZP_20755260.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|437435337|ref|ZP_20756423.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|437478444|ref|ZP_20767457.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|437497853|ref|ZP_20773587.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|437500916|ref|ZP_20774218.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|437542848|ref|ZP_20782677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|437553250|ref|ZP_20783892.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|437575136|ref|ZP_20789932.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|437591955|ref|ZP_20794933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|437601401|ref|ZP_20797645.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|437617172|ref|ZP_20802808.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|437657855|ref|ZP_20811290.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|437670137|ref|ZP_20815590.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|437695445|ref|ZP_20822086.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|437723730|ref|ZP_20829411.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|437763753|ref|ZP_20834970.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|437813442|ref|ZP_20841844.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|437890591|ref|ZP_20849255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|438004701|ref|ZP_20854248.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|438090156|ref|ZP_20860458.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|438101114|ref|ZP_20864065.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|438112375|ref|ZP_20868972.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|445129011|ref|ZP_21380559.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|445141337|ref|ZP_21385359.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|445155292|ref|ZP_21392256.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|445173488|ref|ZP_21396711.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE8a]
gi|445221416|ref|ZP_21403107.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|445330961|ref|ZP_21414010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|445349267|ref|ZP_21420046.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|445363390|ref|ZP_21424558.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
gi|226725342|sp|B5FTI4.1|RSMF_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725343|sp|B5R2S1.1|RSMF_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725344|sp|B5R8V2.1|RSMF_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096811|sp|B4TKI0.2|RSMF_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197939353|gb|ACH76686.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205272268|emb|CAR37145.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205339225|gb|EDZ25989.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|206708447|emb|CAR32768.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326623036|gb|EGE29381.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|381294502|gb|EIC35641.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|381300433|gb|EIC41495.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|381303029|gb|EIC44058.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|381307487|gb|EIC48341.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|381311404|gb|EIC52223.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|395986394|gb|EJH95558.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|395987144|gb|EJH96307.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|395990498|gb|EJH99629.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|395997252|gb|EJI06293.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|395997663|gb|EJI06703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|396006542|gb|EJI15505.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|396008542|gb|EJI17476.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|396010783|gb|EJI19695.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|396013713|gb|EJI22600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|396021305|gb|EJI30131.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|396022658|gb|EJI31471.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|396030189|gb|EJI38924.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|396039878|gb|EJI48502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|396041093|gb|EJI49716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|396044960|gb|EJI53555.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|396051166|gb|EJI59684.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|396053011|gb|EJI61516.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|396055800|gb|EJI64277.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|396062376|gb|EJI70789.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|396064872|gb|EJI73255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|396074200|gb|EJI82491.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|402521104|gb|EJW28442.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|402522534|gb|EJW29856.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|402524964|gb|EJW32261.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|402532468|gb|EJW39660.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|434960150|gb|ELL53557.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|434963972|gb|ELL56994.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434973829|gb|ELL66217.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434977207|gb|ELL69356.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434986607|gb|ELL78258.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990222|gb|ELL81772.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434995173|gb|ELL86490.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996280|gb|ELL87596.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435001740|gb|ELL92829.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435009211|gb|ELM00003.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|435009554|gb|ELM00340.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435014922|gb|ELM05479.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435016255|gb|ELM06781.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435025952|gb|ELM16083.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435027305|gb|ELM17434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032090|gb|ELM22034.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435038497|gb|ELM28278.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435043047|gb|ELM32764.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435048490|gb|ELM38055.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435052125|gb|ELM41627.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435057681|gb|ELM47050.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435062301|gb|ELM51483.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435063534|gb|ELM52682.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435068148|gb|ELM57177.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435079443|gb|ELM68154.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435082928|gb|ELM71539.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435084393|gb|ELM72979.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435090968|gb|ELM79369.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435092577|gb|ELM80932.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435093992|gb|ELM82331.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435102714|gb|ELM90817.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435105167|gb|ELM93204.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435109834|gb|ELM97780.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|435114107|gb|ELN01925.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|435116999|gb|ELN04711.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|435120072|gb|ELN07674.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|435131240|gb|ELN18467.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|435134655|gb|ELN21781.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|435138185|gb|ELN25212.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|435142373|gb|ELN29284.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|435151929|gb|ELN38568.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|435154940|gb|ELN41498.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|435158723|gb|ELN45102.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|435162727|gb|ELN48887.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|435163691|gb|ELN49827.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|435168681|gb|ELN54513.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|435177198|gb|ELN62530.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|435184397|gb|ELN69326.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|435185944|gb|ELN70800.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|435188992|gb|ELN73640.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|435191016|gb|ELN75583.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|435200042|gb|ELN84065.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|435213832|gb|ELN96698.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|435221263|gb|ELO03536.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|435224938|gb|ELO06877.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|435235250|gb|ELO16071.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|435239195|gb|ELO19802.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|435244897|gb|ELO25004.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|435245101|gb|ELO25188.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|435253565|gb|ELO33035.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|435260937|gb|ELO40099.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|435261171|gb|ELO40332.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|435271051|gb|ELO49531.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|435277721|gb|ELO55653.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|435281726|gb|ELO59381.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|435293497|gb|ELO70190.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|435296672|gb|ELO73035.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|435308419|gb|ELO83372.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|435316727|gb|ELO89840.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|435324686|gb|ELO96614.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|435327462|gb|ELO99153.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435330453|gb|ELP01719.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|435335571|gb|ELP05769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|444849341|gb|ELX74454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|444851039|gb|ELX76134.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|444854321|gb|ELX79385.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|444859882|gb|ELX84816.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE8a]
gi|444870212|gb|ELX94738.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|444875765|gb|ELX99962.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|444877685|gb|ELY01824.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|444883707|gb|ELY07577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
Length = 479
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>gi|194449925|ref|YP_002045895.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|386591678|ref|YP_006088078.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|194408229|gb|ACF68448.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|383798722|gb|AFH45804.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
Length = 513
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|387829745|ref|YP_003349682.1| hypothetical protein ECSF_1692 [Escherichia coli SE15]
gi|432422093|ref|ZP_19664641.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE178]
gi|432500186|ref|ZP_19741946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE216]
gi|432558913|ref|ZP_19795591.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE49]
gi|432694577|ref|ZP_19929784.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE162]
gi|432710739|ref|ZP_19945801.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE6]
gi|432919253|ref|ZP_20123384.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE173]
gi|432927060|ref|ZP_20128600.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE175]
gi|432981237|ref|ZP_20170013.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE211]
gi|433096652|ref|ZP_20282849.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE139]
gi|433106016|ref|ZP_20292007.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE148]
gi|281178902|dbj|BAI55232.1| conserved hypothetical protein [Escherichia coli SE15]
gi|430944852|gb|ELC64941.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE178]
gi|431029056|gb|ELD42088.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE216]
gi|431091964|gb|ELD97672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE49]
gi|431234776|gb|ELF30170.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE162]
gi|431249531|gb|ELF43686.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE6]
gi|431444567|gb|ELH25589.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE173]
gi|431445287|gb|ELH26214.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE175]
gi|431491992|gb|ELH71595.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE211]
gi|431616913|gb|ELI85936.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE139]
gi|431629240|gb|ELI97606.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE148]
Length = 481
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 166/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|417365271|ref|ZP_12137967.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
gi|353594928|gb|EHC52297.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
Length = 479
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLWL 261
Query: 328 LKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ V+ +P G F E H +P +++ +GFFVA+L+KMS+
Sbjct: 262 QETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS 313
>gi|195873256|ref|ZP_02696581.2| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|418762923|ref|ZP_13319048.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|418765791|ref|ZP_13321872.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|418772500|ref|ZP_13328504.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|418777456|ref|ZP_13333385.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|418778951|ref|ZP_13334858.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|418785926|ref|ZP_13341752.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|418802213|ref|ZP_13357841.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|419788328|ref|ZP_14314019.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|419793714|ref|ZP_14319332.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|195634470|gb|EDX52822.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|392616640|gb|EIW99072.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|392617842|gb|EIX00257.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|392732614|gb|EIZ89825.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|392735257|gb|EIZ92434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|392739544|gb|EIZ96677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|392743915|gb|EJA00977.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|392750798|gb|EJA07758.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|392754401|gb|EJA11318.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|392778055|gb|EJA34736.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
Length = 513
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|375001008|ref|ZP_09725348.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
gi|353075696|gb|EHB41456.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
Length = 513
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNHGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLWL 295
Query: 328 LKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ V+ +P G F E H +P +++ +GFFVA+L+KMS+
Sbjct: 296 QETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS 347
>gi|417372851|ref|ZP_12143043.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Inverness str. R8-3668]
gi|353604188|gb|EHC59045.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Inverness str. R8-3668]
Length = 460
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 9 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 67
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 68 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 127
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 128 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 186
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 187 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLWL 242
Query: 328 LKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ V+ +P G F E H +P +++ +GFFVA+L+KMS+
Sbjct: 243 QETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS 294
>gi|375123295|ref|ZP_09768459.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|326627545|gb|EGE33888.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
Length = 513
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|386704436|ref|YP_006168283.1| tRNA and rRNA cytosine-C5-methylase [Escherichia coli P12b]
gi|383102604|gb|AFG40113.1| tRNA and rRNA cytosine-C5-methylase [Escherichia coli P12b]
Length = 481
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 178/340 (52%), Gaps = 38/340 (11%)
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
++Y + FL M + + + + ++P +R NTLK D + G L
Sbjct: 7 TFYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTL 66
Query: 130 DPLSKWSKVGLVV---YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL-----APQEKER 181
P+ W + G + + +P+G+T E+++G + +Q ASS LPV AL APQ R
Sbjct: 67 TPI-PWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---R 122
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241
V+D+AAAPG KTT IAA M N G I ANE ASR+K L AN+ R G++N + ++DG
Sbjct: 123 VMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG--- 179
Query: 242 PKVLGLNT---VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
+V G D +LLDAPCSG GV+ KD + S E Q+ + Q++LI +A +
Sbjct: 180 -RVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL 238
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRF 355
+ GG +VYSTC++ ENEAV + LK+ V+ +P G F E
Sbjct: 239 ----RPGGTLVYSTCTLNQEENEAVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFL 293
Query: 356 HPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQP 395
H +P +++ +GFFVA+L+K ++ A P P
Sbjct: 294 H--------VFPQIYDCEGFFVARLRK---TQAIPALPAP 322
>gi|331683339|ref|ZP_08383940.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H299]
gi|331079554|gb|EGI50751.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H299]
Length = 479
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|76802670|ref|YP_330765.1| rRNA methylase [Natronomonas pharaonis DSM 2160]
gi|76558535|emb|CAI50127.1| tRNA/rRNA cytosine-C5-methylase [Natronomonas pharaonis DSM 2160]
Length = 303
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 152/288 (52%), Gaps = 8/288 (2%)
Query: 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEY 155
E+ E+P P +R N +K + GV+ +P+ W + + + P + P +
Sbjct: 19 EACERPLPSVVRVNRIKATAESVRQAFDEAGVDYEPVD-WHDGLFRLGEGESPGNSWP-F 76
Query: 156 MAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR 215
+ G+ Q S +P +ALAPQ ERV+D AAPG KTT +AALM + GL+ N+ R
Sbjct: 77 VHGWVYGQEEVSAVPALALAPQPGERVLDCCAAPGSKTTQLAALMDDRGLLVGNDNNLGR 136
Query: 216 LKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCSGTGVISKDESVKTS 274
L +L +N R GVTN V D L K G DR L+D PCS G + K+
Sbjct: 137 LSALRSNAERCGVTNIAVTRQDARNLSLKPFGGERFDRTLVDVPCSCEGTVRKNPDAVDG 196
Query: 275 KSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334
SL+ I+ + +QK ++ AI++ ++ GG +VYSTC+ ENEAV+ +AL D +
Sbjct: 197 WSLDHIEGIAGVQKAILERAIEV----TRDGGTVVYSTCTFAPEENEAVLQHALDGGDCR 252
Query: 335 LVPCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
LV L G + + RF ++ K +R YPH ++ GFF AKL+
Sbjct: 253 LVDFDLPLESVPGVTDWEDERFDDAVRKAQRIYPHHNDTGGFFCAKLE 300
>gi|417415097|ref|ZP_12158852.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|353623703|gb|EHC72916.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
Length = 492
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 41 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 99
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 100 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 159
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 160 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 218
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 219 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLWL 274
Query: 328 LKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ V+ +P G F E H +P +++ +GFFVA+L+KMS+
Sbjct: 275 QETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS 326
>gi|292899688|ref|YP_003539057.1| hypothetical protein EAM_1978 [Erwinia amylovora ATCC 49946]
gi|428785446|ref|ZP_19002937.1| Ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
ACW56400]
gi|291199536|emb|CBJ46653.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|426277008|gb|EKV54735.1| Ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
ACW56400]
Length = 478
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 169/324 (52%), Gaps = 25/324 (7%)
Query: 84 EMFPPV-ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV 142
+M P + I ++P LR NTLK D ++ L P+ W G +
Sbjct: 19 QMLPDANDFARFIAISQQPLRRSLRVNTLKISVDDFLQLVKPYQWALTPI-PWCPEGFWI 77
Query: 143 Y---DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIA 197
++P+G+T E++AG + +Q ASS LPV AL +RV+DMAAAPG KTT IA
Sbjct: 78 SRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQRVMDMAAAPGSKTTQIA 137
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257
A M + G I ANE ASR+K L ANL R G++NT + ++DG L D VLLDA
Sbjct: 138 ACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRVFGSALP-ECFDAVLLDA 196
Query: 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317
PCSG GV+ KD + S + + Q+ LI +A + + GG +VYSTC++
Sbjct: 197 PCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHAL----RPGGTLVYSTCTLNR 252
Query: 318 TENEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGF 375
+EN+ V+ + L++ V + P F V E H +PH+ + +GF
Sbjct: 253 SENQQVVRWLLEQYPDAVAIEPLNTLFNGAEQVATAEGFLH--------VFPHIFDSEGF 304
Query: 376 FVAKLKKMSNSKKTSAGPQPSETV 399
FVA+L+K+S+ + S QP+ V
Sbjct: 305 FVARLRKVSSVARLS---QPTYKV 325
>gi|188533653|ref|YP_001907450.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia tasmaniensis
Et1/99]
gi|254766866|sp|B2VJ83.1|RSMF_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|188028695|emb|CAO96557.1| Conserved hypothetical protein YebU [Erwinia tasmaniensis Et1/99]
Length = 478
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 167/317 (52%), Gaps = 24/317 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQ 146
E I S + P LR NTLK D ++ L P+ W + G +
Sbjct: 26 EFQRFITSSQLPLRRSLRVNTLKISVDDFLTLVEPYQWALTPI-PWCQEGFWISRDDADT 84
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+P+G+T E++AG + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M N G
Sbjct: 85 LPLGSTAEHLAGLFYIQEASSMLPVSALFDGGDMPQRVMDMAAAPGSKTTQIAAHMGNRG 144
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L ANL R GV+NT + ++DG L D VLLDAPCSG GV
Sbjct: 145 AILANEYSASRVKVLHANLSRCGVSNTAMTHFDGRVFGPALP-ECFDAVLLDAPCSGEGV 203
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S ++ + Q+ LI +A + + GG +VYSTC++ EN+ V+
Sbjct: 204 VRKDADALRNWSQSSTEEIAATQQALINSAFHAL----RPGGTLVYSTCTLNTRENQQVV 259
Query: 325 DYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ L++ VK+ P LD G R + E +PH+ + +GFFVA+L+K
Sbjct: 260 NGLLEQYPDAVKVEP--LDTLFMGAER------ATTAEGYLHVFPHIFDSEGFFVARLRK 311
Query: 383 MSNSKKTSAGPQPSETV 399
+++ PQP V
Sbjct: 312 VASVPPM---PQPGYKV 325
>gi|436637313|ref|ZP_20516010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|434957668|gb|ELL51296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
Length = 493
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|312172646|emb|CBX80902.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia amylovora
ATCC BAA-2158]
Length = 478
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 166/317 (52%), Gaps = 24/317 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQ 146
+ I ++P LR NTLK D ++ L P+ W G + +
Sbjct: 26 DFARFIAISQQPLRRSLRVNTLKISVDDFLQLVKPYQWALTPI-PWCPEGFWISRDDADK 84
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+P+G+T E++AG + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M + G
Sbjct: 85 LPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQRVMDMAAAPGSKTTQIAACMGDRG 144
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L ANL R G++NT + ++DG L D VLLDAPCSG GV
Sbjct: 145 AILANEYSASRVKVLHANLSRCGISNTAMTHFDGRVFGSALP-ECFDAVLLDAPCSGEGV 203
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S + + Q+ LI +A + + GG +VYSTC++ +EN+ V+
Sbjct: 204 VRKDADALRNWSATSTAEIAATQRDLINSAFHAL----RPGGTLVYSTCTLNRSENQQVV 259
Query: 325 DYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ L++ V + P F V E H +PH+ + +GFFVA+L+K
Sbjct: 260 RWLLEQYPDAVAIEPLNTLFNGAEQVATAEGFLH--------VFPHIFDSEGFFVARLRK 311
Query: 383 MSNSKKTSAGPQPSETV 399
+S+ + S QP+ V
Sbjct: 312 VSSVARLS---QPTYKV 325
>gi|432718952|ref|ZP_19953921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE9]
gi|431262764|gb|ELF54753.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE9]
Length = 481
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 168/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 RW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 312 K---TQAIPALPAP 322
>gi|300816275|ref|ZP_07096497.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
107-1]
gi|415873628|ref|ZP_11540848.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Escherichia coli MS 79-10]
gi|432805883|ref|ZP_20039821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE91]
gi|432934477|ref|ZP_20133986.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE184]
gi|433193803|ref|ZP_20377802.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE90]
gi|300530965|gb|EFK52027.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
107-1]
gi|342930835|gb|EGU99557.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Escherichia coli MS 79-10]
gi|431355004|gb|ELG41718.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE91]
gi|431453458|gb|ELH33865.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE184]
gi|431717105|gb|ELJ81207.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE90]
Length = 481
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 171/318 (53%), Gaps = 32/318 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+D+AAAPG KTT IAA M N G I
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAAQRVMDVAAAPGSKTTQIAARMNNEGAIL 148
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSGTGV 264
ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG GV
Sbjct: 149 ANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 MW-LKETYPDAVEFLPLGELFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQPSETV 399
K ++ A P P+ V
Sbjct: 312 K---TQAIPALPTPTYKV 326
>gi|425300602|ref|ZP_18690546.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
07798]
gi|408216749|gb|EKI41063.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
07798]
Length = 479
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVTDFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|445181961|ref|ZP_21398453.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|444871448|gb|ELX95875.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
Length = 413
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 167/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 347 S---LPAMPAPGYKV 358
>gi|432947702|ref|ZP_20142858.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE196]
gi|433043425|ref|ZP_20230926.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE117]
gi|431457680|gb|ELH38017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE196]
gi|431556756|gb|ELI30531.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE117]
Length = 481
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLAAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|450189481|ref|ZP_21890544.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SEPT362]
gi|449321424|gb|EMD11436.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SEPT362]
Length = 479
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDIAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|365849910|ref|ZP_09390378.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Yokenella
regensburgei ATCC 43003]
gi|364568235|gb|EHM45880.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Yokenella
regensburgei ATCC 43003]
Length = 478
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 168/318 (52%), Gaps = 21/318 (6%)
Query: 75 NEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
++FL+ M + + + + ++P +R NTLK D ++ G L P+
Sbjct: 10 DDFLLQMRAAMPAELSFDDFLAACQRPLRRSIRVNTLKITVADFLALVAPYGWQLTPV-P 68
Query: 135 WSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAP 189
W G + + +P+G+T E+++G + +Q ASS LPV AL + +RV+D+AAAP
Sbjct: 69 WCAEGFWIEREDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNQPQRVMDVAAAP 128
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT IAA M N G I ANE ASR+K L AN+ R G+ N + ++DG L
Sbjct: 129 GSKTTQIAARMDNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EA 187
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D +LLDAPCSG GV+ KD + S+ + Q++LI +A + + GG +V
Sbjct: 188 FDAILLDAPCSGEGVVRKDPDALKNWSVASNLDIAATQRELIDSAFHAL----RPGGTLV 243
Query: 310 YSTCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
YSTC++ ENEAV+ + L + + V++V F G E H +P
Sbjct: 244 YSTCTLNRDENEAVVAWLLAQYPQAVEVVSLQTLFAEAGQALTPEGYLH--------VFP 295
Query: 368 HVHNMDGFFVAKLKKMSN 385
+ + +GFFVA+L+K ++
Sbjct: 296 QIFDCEGFFVARLRKTAS 313
>gi|413923704|gb|AFW63636.1| hypothetical protein ZEAMMB73_244854, partial [Zea mays]
Length = 125
Score = 172 bits (437), Expect = 3e-40, Method: Composition-based stats.
Identities = 75/86 (87%), Positives = 83/86 (96%)
Query: 295 IDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHR 354
ID+VDANSK+GGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF+R+REHR
Sbjct: 37 IDLVDANSKTGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHR 96
Query: 355 FHPSLEKTRRFYPHVHNMDGFFVAKL 380
FH SLEKTRRFYPHV+NMDGFFVAK+
Sbjct: 97 FHTSLEKTRRFYPHVNNMDGFFVAKV 122
>gi|311279266|ref|YP_003941497.1| RNA methylase [Enterobacter cloacae SCF1]
gi|308748461|gb|ADO48213.1| RNA methylase, NOL1/NOP2/sun family [Enterobacter cloacae SCF1]
Length = 499
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 164/300 (54%), Gaps = 21/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D + + G L P+ W + G + + VP+
Sbjct: 49 DFIAACQRPLRRSIRVNTLKISVADFLERVAPYGWQLTPV-PWCEEGFWIERNDEEDVPL 107
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+D+AAAPG KTT IAA M N G I
Sbjct: 108 GSTAEHLSGLFYIQEASSMLPVTALFADGNRPQRVMDVAAAPGSKTTQIAARMGNQGAIL 167
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+ K
Sbjct: 168 ANEYSASRVKVLHANISRCGISNAALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRK 226
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E Q + Q++LI +A + + GG +VYSTC++ ENE V+ +
Sbjct: 227 DPDALKNWSPESNQAIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEEVLAWL 282
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ + + ++++P F E H +P +++ +GFFVA+L+K ++
Sbjct: 283 MARFPQALEILPLNALFPDAAKALTPEGFLH--------VFPQIYDCEGFFVARLRKTAS 334
>gi|448656985|ref|ZP_21682524.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula californiae ATCC
33799]
gi|445763027|gb|EMA14231.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula californiae ATCC
33799]
Length = 303
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 148/290 (51%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
I++ E+P P +R NT+K + L + + DP+ W GL V P GA
Sbjct: 17 FIDACERPLPSAIRVNTIKATVERVRTALADADIAYDPV-DWHD-GLFVLPEDSP-GANW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S +P L PQ ERV D AAPG KTT +AALM++TG + A +
Sbjct: 74 PYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMEDTGEVVATDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R+ +L N R+G T V + DG N K G DR L+D PCS G I K+
Sbjct: 134 GRISALRTNTERLGATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTL 193
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
SL ++ S +QK ++ A+++ ++ GG +VYSTC+ ENEAV+DY L +
Sbjct: 194 EDWSLSHVEGISGVQKGILKRAVEV----TEPGGTVVYSTCTFAPEENEAVLDYVLDEVA 249
Query: 333 VKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V L G + + F PS+ +R YPH ++ GFF AKL+
Sbjct: 250 CEIVDYDLPLNHAPGITDWEDESFDPSVADAKRIYPHHNDTGGFFCAKLE 299
>gi|387507081|ref|YP_006159337.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. RM12579]
gi|419126169|ref|ZP_13671058.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5C]
gi|419131771|ref|ZP_13676612.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5D]
gi|374359075|gb|AEZ40782.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. RM12579]
gi|377976224|gb|EHV39535.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5C]
gi|377977174|gb|EHV40475.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5D]
Length = 479
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 172/321 (53%), Gaps = 46/321 (14%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDF-------GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ LK+ V+ +P G F +GF+ +P +++ +G
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFL---------------NVFPQIYDCEG 302
Query: 375 FFVAKLKKMSNSKKTSAGPQP 395
FFVA+L+K ++ A P P
Sbjct: 303 FFVARLRK---TQAIPALPTP 320
>gi|330446010|ref|ZP_08309662.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490201|dbj|GAA04159.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 476
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 161/303 (53%), Gaps = 21/303 (6%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DS 145
+++ E I + P +R NTLK D + NRG L P+ W G + +
Sbjct: 23 LDIDEFIACCKTPLRRSIRVNTLKISVEDFLARVANRGWTLTPVP-WCDTGFWIEREDED 81
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNT 203
V +G T E+MAG + +Q ASS +PV AL + V+DMA+APG KTT IA M+N
Sbjct: 82 SVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMASAPGSKTTQIACTMQNQ 141
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G + ANE+ ASR+K L +NL R GV N + ++DG D +LLDAPCSG G
Sbjct: 142 GALVANELAASRIKVLHSNLQRCGVYNAALTHFDGCVF-GTWAPEAFDSILLDAPCSGEG 200
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KD+ + SL I++ + +Q+ LI++A + K+GG +VYSTC++ +EN+ V
Sbjct: 201 AIRKDDDAMANWSLASIEEIAEVQRNLIVSAFQAL----KTGGVMVYSTCTLNQSENQDV 256
Query: 324 IDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ +K V+ P F ++ H YP + + +GFFVA+++
Sbjct: 257 CHFLKEKFGDAVQFEPLNDLFDGAEKSLTKDGFLH--------VYPQIFDSEGFFVARIR 308
Query: 382 KMS 384
K++
Sbjct: 309 KLA 311
>gi|331673368|ref|ZP_08374136.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA280]
gi|331069566|gb|EGI40953.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA280]
Length = 481
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|432801985|ref|ZP_20035966.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE84]
gi|431348962|gb|ELG35804.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE84]
Length = 481
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|417608403|ref|ZP_12258909.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_DG131-3]
gi|422774265|ref|ZP_16827921.1| NOL1/NOP2/sun family protein [Escherichia coli H120]
gi|425422532|ref|ZP_18803712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1288]
gi|323948280|gb|EGB44268.1| NOL1/NOP2/sun family protein [Escherichia coli H120]
gi|345358993|gb|EGW91172.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_DG131-3]
gi|408344770|gb|EKJ59119.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1288]
Length = 479
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|419914047|ref|ZP_14432454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD1]
gi|388387762|gb|EIL49371.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD1]
Length = 481
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|419865517|ref|ZP_14387899.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H25 str. CVM9340]
gi|388337283|gb|EIL03785.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H25 str. CVM9340]
Length = 479
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|331653241|ref|ZP_08354246.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli M718]
gi|331049339|gb|EGI21411.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli M718]
Length = 481
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDIAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|432534081|ref|ZP_19771059.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE234]
gi|431061231|gb|ELD70550.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE234]
Length = 481
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGELFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|423140349|ref|ZP_17127987.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
gi|379052903|gb|EHY70794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
Length = 513
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 167/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D + G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALTAPYGWSLTPI-PWCDEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNHGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNHDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P F E H +P +++ +GFFVA+L+K+S
Sbjct: 295 LKETYADAVEFLPLDDLFPEADRALTPEGFLH--------VFPQIYDCEGFFVARLRKIS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P+ V
Sbjct: 347 S---LPAQPAPTYKV 358
>gi|218554409|ref|YP_002387322.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
IAI1]
gi|293446207|ref|ZP_06662629.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B088]
gi|331668527|ref|ZP_08369375.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA271]
gi|417168095|ref|ZP_12000717.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
99.0741]
gi|417265971|ref|ZP_12053340.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.3884]
gi|418044028|ref|ZP_12682177.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W26]
gi|418941099|ref|ZP_13494438.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H43 str. T22]
gi|419805996|ref|ZP_14331116.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli AI27]
gi|422761081|ref|ZP_16814840.1| NOL1/NOP2/sun family protein [Escherichia coli E1167]
gi|226725336|sp|B7M2B1.1|RSMF_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096806|sp|B6IBR3.2|RSMF_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218361177|emb|CAQ98760.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
IAI1]
gi|291323037|gb|EFE62465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B088]
gi|324118895|gb|EGC12784.1| NOL1/NOP2/sun family protein [Escherichia coli E1167]
gi|331063721|gb|EGI35632.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA271]
gi|375323589|gb|EHS69295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H43 str. T22]
gi|383472979|gb|EID65009.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W26]
gi|384470967|gb|EIE55058.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli AI27]
gi|386171121|gb|EIH43169.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
99.0741]
gi|386231964|gb|EII59311.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.3884]
Length = 479
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|433092243|ref|ZP_20278517.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE138]
gi|431610789|gb|ELI80073.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE138]
Length = 481
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|419261256|ref|ZP_13803684.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10B]
gi|378108587|gb|EHW70200.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10B]
Length = 479
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|415791541|ref|ZP_11495365.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
EPECa14]
gi|417298720|ref|ZP_12085958.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
900105 (10e)]
gi|417639370|ref|ZP_12289520.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
TX1999]
gi|419170394|ref|ZP_13714284.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7A]
gi|419181043|ref|ZP_13724660.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7C]
gi|419186479|ref|ZP_13729996.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7D]
gi|419191764|ref|ZP_13735224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7E]
gi|419209699|ref|ZP_13752789.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8C]
gi|419215732|ref|ZP_13758739.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8D]
gi|419226913|ref|ZP_13769778.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9A]
gi|419232258|ref|ZP_13775039.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9B]
gi|419238034|ref|ZP_13780759.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9C]
gi|419243473|ref|ZP_13786114.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9D]
gi|419249295|ref|ZP_13791884.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9E]
gi|419266931|ref|ZP_13809292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10C]
gi|419272765|ref|ZP_13815067.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10D]
gi|419284186|ref|ZP_13826370.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10F]
gi|419873598|ref|ZP_14395579.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9534]
gi|419900258|ref|ZP_14419714.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9942]
gi|419909256|ref|ZP_14427868.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10026]
gi|420104211|ref|ZP_14614947.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9455]
gi|420109095|ref|ZP_14619283.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9553]
gi|420117140|ref|ZP_14626507.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10021]
gi|420121918|ref|ZP_14630961.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10030]
gi|420129763|ref|ZP_14638286.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10224]
gi|420134108|ref|ZP_14642255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9952]
gi|420385829|ref|ZP_14885188.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPECa12]
gi|424752028|ref|ZP_18180034.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CFSAN001629]
gi|424756014|ref|ZP_18183851.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CFSAN001630]
gi|425379593|ref|ZP_18763705.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1865]
gi|323153088|gb|EFZ39356.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
EPECa14]
gi|345393768|gb|EGX23537.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
TX1999]
gi|378016625|gb|EHV79505.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7A]
gi|378024411|gb|EHV87065.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7C]
gi|378030183|gb|EHV92787.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7D]
gi|378039707|gb|EHW02195.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7E]
gi|378055564|gb|EHW17826.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8C]
gi|378063591|gb|EHW25759.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8D]
gi|378076004|gb|EHW38017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9A]
gi|378078751|gb|EHW40730.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9B]
gi|378084584|gb|EHW46486.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9C]
gi|378092081|gb|EHW53908.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9D]
gi|378096668|gb|EHW58438.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9E]
gi|378112803|gb|EHW74376.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10C]
gi|378118141|gb|EHW79650.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10D]
gi|378134055|gb|EHW95385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10F]
gi|386257759|gb|EIJ13242.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
900105 (10e)]
gi|388352361|gb|EIL17485.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9534]
gi|388373545|gb|EIL36814.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10026]
gi|388378399|gb|EIL41140.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9942]
gi|391306075|gb|EIQ63840.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPECa12]
gi|394381779|gb|EJE59444.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10224]
gi|394402494|gb|EJE78213.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10021]
gi|394404947|gb|EJE80253.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9455]
gi|394408010|gb|EJE82743.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9553]
gi|394423002|gb|EJE96301.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9952]
gi|394424485|gb|EJE97615.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10030]
gi|408298385|gb|EKJ16328.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1865]
gi|421938317|gb|EKT95891.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CFSAN001629]
gi|421949824|gb|EKU06734.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CFSAN001630]
Length = 479
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|193069919|ref|ZP_03050868.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E110019]
gi|443617913|ref|YP_007381769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
O78]
gi|192956819|gb|EDV87273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E110019]
gi|443422421|gb|AGC87325.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
O78]
Length = 479
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|427804967|ref|ZP_18972034.1| putative nucleolar proteins [Escherichia coli chi7122]
gi|427809523|ref|ZP_18976588.1| putative nucleolar proteins [Escherichia coli]
gi|432481174|ref|ZP_19723132.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE210]
gi|432674872|ref|ZP_19910345.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE142]
gi|412963149|emb|CCK47067.1| putative nucleolar proteins [Escherichia coli chi7122]
gi|412969702|emb|CCJ44340.1| putative nucleolar proteins [Escherichia coli]
gi|431007831|gb|ELD22642.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE210]
gi|431215373|gb|ELF13069.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE142]
Length = 481
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|260855695|ref|YP_003229586.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. 11368]
gi|300904700|ref|ZP_07122533.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
84-1]
gi|301304407|ref|ZP_07210519.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
124-1]
gi|415861250|ref|ZP_11534916.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
85-1]
gi|433130361|ref|ZP_20315806.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE163]
gi|433135063|ref|ZP_20320417.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE166]
gi|257754344|dbj|BAI25846.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|300403367|gb|EFJ86905.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
84-1]
gi|300840258|gb|EFK68018.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
124-1]
gi|315257353|gb|EFU37321.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
85-1]
gi|431647409|gb|ELJ14893.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE163]
gi|431657926|gb|ELJ24888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE166]
Length = 481
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|209767734|gb|ACI82179.1| putative rRNA methylase [Escherichia coli]
Length = 481
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 172/321 (53%), Gaps = 46/321 (14%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 260
Query: 325 DYALKKR---DVKLVPCGLDF-------GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ LK+ V+ +P G F +GF+ +P +++ +G
Sbjct: 261 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFL---------------NVFPQIYDCEG 304
Query: 375 FFVAKLKKMSNSKKTSAGPQP 395
FFVA+L+K ++ A P P
Sbjct: 305 FFVARLRK---TQAIPALPTP 322
>gi|417629008|ref|ZP_12279248.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_MHI813]
gi|345374222|gb|EGX06175.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_MHI813]
Length = 479
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
+V + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 SVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|257096822|sp|B2U477.2|RSMF_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|209919201|ref|YP_002293285.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SE11]
gi|300824225|ref|ZP_07104343.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
119-7]
gi|307314087|ref|ZP_07593699.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W]
gi|331677714|ref|ZP_08378389.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H591]
gi|332279011|ref|ZP_08391424.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
gi|378712724|ref|YP_005277617.1| RNA methylase [Escherichia coli KO11FL]
gi|386609221|ref|YP_006124707.1| putative methyltransferase [Escherichia coli W]
gi|386701196|ref|YP_006165033.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
KO11FL]
gi|386709694|ref|YP_006173415.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli W]
gi|419930537|ref|ZP_14448135.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-1]
gi|419950120|ref|ZP_14466340.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
CUMT8]
gi|422353982|ref|ZP_16434729.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
117-3]
gi|432376983|ref|ZP_19619980.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE12]
gi|432765189|ref|ZP_19999628.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE48]
gi|432831814|ref|ZP_20065388.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE135]
gi|432834825|ref|ZP_20068364.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE136]
gi|432967956|ref|ZP_20156871.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE203]
gi|209912460|dbj|BAG77534.1| conserved hypothetical protein [Escherichia coli SE11]
gi|300523296|gb|EFK44365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
119-7]
gi|306906225|gb|EFN36742.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W]
gi|315061138|gb|ADT75465.1| predicted methyltransferase [Escherichia coli W]
gi|323378285|gb|ADX50553.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli KO11FL]
gi|324018025|gb|EGB87244.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
117-3]
gi|331074174|gb|EGI45494.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H591]
gi|332101363|gb|EGJ04709.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
gi|383392723|gb|AFH17681.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
KO11FL]
gi|383405386|gb|AFH11629.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli W]
gi|388399929|gb|EIL60703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-1]
gi|388417435|gb|EIL77277.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
CUMT8]
gi|430899275|gb|ELC21380.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE12]
gi|431310950|gb|ELF99130.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE48]
gi|431375784|gb|ELG61107.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE135]
gi|431385185|gb|ELG69172.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE136]
gi|431471073|gb|ELH50966.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE203]
Length = 481
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|417681615|ref|ZP_12330989.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
3594-74]
gi|420352875|ref|ZP_14854003.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
4444-74]
gi|146325704|sp|Q321Y0.2|RSMF_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|332096600|gb|EGJ01594.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
3594-74]
gi|391280662|gb|EIQ39328.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
4444-74]
Length = 479
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|432602355|ref|ZP_19838599.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE66]
gi|431140929|gb|ELE42694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE66]
Length = 481
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 168/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVTDFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHSL----RPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 312 K---TQAIPALPAP 322
>gi|82543759|ref|YP_407706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii
Sb227]
gi|81245170|gb|ABB65878.1| putative nucleolar proteins [Shigella boydii Sb227]
Length = 481
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|418513375|ref|ZP_13079606.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|366082272|gb|EHN46209.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
Length = 513
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 161/301 (53%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADGNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 295 LKETYADAVEFFPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|442604501|ref|ZP_21019346.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
Nissle 1917]
gi|146325693|sp|Q8FGS9.2|RSMF_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|441714758|emb|CCQ05323.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
Nissle 1917]
Length = 479
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|187732363|ref|YP_001880634.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii CDC
3083-94]
gi|187429355|gb|ACD08629.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
CDC 3083-94]
Length = 481
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|422835794|ref|ZP_16883846.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E101]
gi|371611567|gb|EHO00089.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E101]
Length = 506
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 169/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 55 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 113
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 114 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 170
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 171 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 229
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE+V
Sbjct: 230 VRKDPDALKNWSPESNQEITATQRELIDSAFHAL----RPGGTLVYSTCTLNREENESVC 285
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 286 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 336
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 337 K---TQAIPALPTP 347
>gi|293415150|ref|ZP_06657793.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B185]
gi|291432798|gb|EFF05777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B185]
Length = 479
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALS-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPTP 320
>gi|422790919|ref|ZP_16843623.1| NOL1/NOP2/sun family protein [Escherichia coli TA007]
gi|323972658|gb|EGB67861.1| NOL1/NOP2/sun family protein [Escherichia coli TA007]
Length = 481
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|416305293|ref|ZP_11654253.1| Ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CDC 796-83]
gi|420325197|ref|ZP_14826965.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CCH060]
gi|421682206|ref|ZP_16122020.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1485-80]
gi|320183016|gb|EFW57882.1| Ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CDC 796-83]
gi|391253632|gb|EIQ12803.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CCH060]
gi|404340678|gb|EJZ67096.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1485-80]
Length = 479
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|194439069|ref|ZP_03071152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
101-1]
gi|194422028|gb|EDX38032.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
101-1]
Length = 479
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|419391752|ref|ZP_13932567.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15A]
gi|419396821|ref|ZP_13937591.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15B]
gi|419402156|ref|ZP_13942881.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15C]
gi|419407299|ref|ZP_13947990.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15D]
gi|419412835|ref|ZP_13953491.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15E]
gi|378238476|gb|EHX98477.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15A]
gi|378245172|gb|EHY05110.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15B]
gi|378248015|gb|EHY07930.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15C]
gi|378255549|gb|EHY15407.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15D]
gi|378259700|gb|EHY19512.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15E]
Length = 479
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|372277316|ref|ZP_09513352.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pantoea sp. SL1_M5]
Length = 477
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 161/305 (52%), Gaps = 28/305 (9%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
L + I ++P +R NTLK D N L P+ W + G + D +P
Sbjct: 28 LAQFIAYSQQPLRRSIRVNTLKISVADFLSQTANYDWKLTPV-PWCEEGFWISREDESLP 86
Query: 149 IGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+G+ E+++G + +Q ASS LPV AL A E V+DMAAAPG KTT IAA M N G+I
Sbjct: 87 LGSVAEHLSGLFYIQEASSMLPVTALFDAQSEVSAVMDMAAAPGSKTTQIAARMGNQGVI 146
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SR+K L AN+ R GV+N+ + ++D G LP+ D +LLDAPCSG
Sbjct: 147 LANEFSSSRVKVLHANISRCGVSNSALTHFDARVFGPALPE-----QFDAILLDAPCSGE 201
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
GVI KD + SL + + Q+ L+ +A + K GG +VYSTC++ EN+
Sbjct: 202 GVIRKDADALKNWSLASTHEIAATQRDLLNSAFHAL----KPGGTLVYSTCTLNQIENQQ 257
Query: 323 VIDYALKKRDVKLVPCGLD--FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
VI + L++ + LD F G E H +P + + +GFFVA+L
Sbjct: 258 VIAWLLERYPDAVEVVALDGLFEGAGQAATPEGYLH--------VFPQMFDSEGFFVARL 309
Query: 381 KKMSN 385
+K ++
Sbjct: 310 RKTAS 314
>gi|157157684|ref|YP_001463137.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
E24377A]
gi|253773210|ref|YP_003036041.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260844181|ref|YP_003221959.1| methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|297517982|ref|ZP_06936368.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
OP50]
gi|300924905|ref|ZP_07140836.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
182-1]
gi|300928863|ref|ZP_07144369.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
187-1]
gi|301327598|ref|ZP_07220815.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
78-1]
gi|422786424|ref|ZP_16839163.1| NOL1/NOP2/sun family protein [Escherichia coli H489]
gi|422816885|ref|ZP_16865099.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
M919]
gi|422956804|ref|ZP_16969278.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H494]
gi|422987886|ref|ZP_16978662.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C227-11]
gi|422994767|ref|ZP_16985531.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C236-11]
gi|423003518|ref|ZP_16994264.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 04-8351]
gi|423010083|ref|ZP_17000821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-3677]
gi|423019310|ref|ZP_17010019.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4404]
gi|423024476|ref|ZP_17015173.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4522]
gi|423030293|ref|ZP_17020981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4623]
gi|423038125|ref|ZP_17028799.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423043245|ref|ZP_17033912.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423044987|ref|ZP_17035648.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423053520|ref|ZP_17042328.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423060484|ref|ZP_17049280.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423705819|ref|ZP_17680202.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B799]
gi|429719342|ref|ZP_19254281.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429724685|ref|ZP_19259552.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429776390|ref|ZP_19308372.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02030]
gi|429781165|ref|ZP_19313097.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429783424|ref|ZP_19315340.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02092]
gi|429790796|ref|ZP_19322654.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02093]
gi|429796528|ref|ZP_19328347.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02281]
gi|429798221|ref|ZP_19330023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02318]
gi|429806734|ref|ZP_19338462.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02913]
gi|429811082|ref|ZP_19342783.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03439]
gi|429817154|ref|ZP_19348796.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-04080]
gi|429822365|ref|ZP_19353964.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03943]
gi|429912882|ref|ZP_19378838.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429913754|ref|ZP_19379702.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429918796|ref|ZP_19384729.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429924603|ref|ZP_19390517.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429928541|ref|ZP_19394443.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935093|ref|ZP_19400980.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429940764|ref|ZP_19406638.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429948397|ref|ZP_19414252.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951042|ref|ZP_19416890.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429954338|ref|ZP_19420174.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432750286|ref|ZP_19984893.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE29]
gi|432809476|ref|ZP_20043369.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE101]
gi|157079714|gb|ABV19422.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli
E24377A]
gi|253324254|gb|ACT28856.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|257759328|dbj|BAI30825.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|300418923|gb|EFK02234.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
182-1]
gi|300463153|gb|EFK26646.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
187-1]
gi|300845847|gb|EFK73607.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
78-1]
gi|323961889|gb|EGB57488.1| NOL1/NOP2/sun family protein [Escherichia coli H489]
gi|354861602|gb|EHF22040.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C236-11]
gi|354868955|gb|EHF29367.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C227-11]
gi|354871051|gb|EHF31451.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 04-8351]
gi|354881451|gb|EHF41781.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-3677]
gi|354891169|gb|EHF51404.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4404]
gi|354894002|gb|EHF54199.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4522]
gi|354896149|gb|EHF56325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354899124|gb|EHF59274.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4623]
gi|354900859|gb|EHF60991.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354913888|gb|EHF73876.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354917617|gb|EHF77580.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354919558|gb|EHF79501.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|371599105|gb|EHN87895.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H494]
gi|385539556|gb|EIF86388.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
M919]
gi|385713211|gb|EIG50147.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B799]
gi|429346269|gb|EKY83049.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02030]
gi|429348110|gb|EKY84881.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429354811|gb|EKY91507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02092]
gi|429363011|gb|EKY99655.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02093]
gi|429364910|gb|EKZ01528.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02281]
gi|429366634|gb|EKZ03236.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02318]
gi|429377098|gb|EKZ13623.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02913]
gi|429381609|gb|EKZ18094.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03943]
gi|429384635|gb|EKZ21092.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03439]
gi|429393308|gb|EKZ29704.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-04080]
gi|429393999|gb|EKZ30385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429407518|gb|EKZ43771.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429408375|gb|EKZ44613.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409821|gb|EKZ46047.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429426509|gb|EKZ62598.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429426915|gb|EKZ63002.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429431479|gb|EKZ67528.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429433880|gb|EKZ69910.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429440841|gb|EKZ76818.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429444419|gb|EKZ80365.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0466]
gi|429450048|gb|EKZ85946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429453909|gb|EKZ89777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9941]
gi|431297203|gb|ELF86861.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE29]
gi|431362244|gb|ELG48822.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE101]
Length = 481
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|448640022|ref|ZP_21677170.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula sinaiiensis ATCC
33800]
gi|445762549|gb|EMA13770.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula sinaiiensis ATCC
33800]
Length = 303
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
I++ E+P P +R NT+K + L + + DP+ W GL V P GA
Sbjct: 17 FIDACERPLPSAIRVNTIKATVERVRTALADADIAYDPV-DWHD-GLFVLPEDSP-GANW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S +P L PQ ERV D AAPG KTT +AALM +TG + A +
Sbjct: 74 PYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMDDTGEVVATDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R+ +L N R+G T V + DG N K G DR L+D PCS G I K+
Sbjct: 134 GRISALRTNTERLGATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTL 193
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
SL ++ S +QK ++ A+++ ++ GG +VYSTC+ ENEAV+DY L +
Sbjct: 194 EDWSLSHVEGISGVQKGILKRAVEV----TEPGGTVVYSTCTFAPEENEAVLDYVLDEVA 249
Query: 333 VKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V L G + + F PS+ +R YPH ++ GFF AKL+
Sbjct: 250 CEIVDYDLPLNHAPGITDWEDESFDPSVADAKRIYPHHNDTGGFFCAKLE 299
>gi|432850818|ref|ZP_20081513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE144]
gi|431400140|gb|ELG83522.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE144]
Length = 481
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 164/301 (54%), Gaps = 29/301 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F + H +P +++ +GFFVA+L+
Sbjct: 261 RW-LKETYPDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 K 382
K
Sbjct: 312 K 312
>gi|26248098|ref|NP_754138.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
CFT073]
gi|227885738|ref|ZP_04003543.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
83972]
gi|300994213|ref|ZP_07180770.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
45-1]
gi|301050816|ref|ZP_07197670.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
185-1]
gi|306814337|ref|ZP_07448503.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
NC101]
gi|386629535|ref|YP_006149255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
'clone D i2']
gi|386634455|ref|YP_006154174.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
'clone D i14']
gi|386639360|ref|YP_006106158.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ABU 83972]
gi|422366946|ref|ZP_16447403.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
153-1]
gi|432381499|ref|ZP_19624444.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE15]
gi|432412048|ref|ZP_19654714.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE39]
gi|432431983|ref|ZP_19674415.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE187]
gi|432436000|ref|ZP_19678393.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE188]
gi|432456859|ref|ZP_19699046.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE201]
gi|432495893|ref|ZP_19737692.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE214]
gi|432504559|ref|ZP_19746289.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE220]
gi|432514066|ref|ZP_19751292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE224]
gi|432523934|ref|ZP_19761066.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE230]
gi|432568826|ref|ZP_19805344.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE53]
gi|432593049|ref|ZP_19829367.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE60]
gi|432607656|ref|ZP_19843845.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE67]
gi|432611568|ref|ZP_19847731.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE72]
gi|432646332|ref|ZP_19882122.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE86]
gi|432651267|ref|ZP_19887024.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE87]
gi|432655910|ref|ZP_19891616.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE93]
gi|432699186|ref|ZP_19934344.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE169]
gi|432745810|ref|ZP_19980479.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE43]
gi|432783711|ref|ZP_20017892.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE63]
gi|432844648|ref|ZP_20077547.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE141]
gi|432904998|ref|ZP_20113904.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE194]
gi|432938014|ref|ZP_20136391.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE183]
gi|432971989|ref|ZP_20160857.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE207]
gi|432978434|ref|ZP_20167256.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE209]
gi|432985518|ref|ZP_20174242.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE215]
gi|432995493|ref|ZP_20184104.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE218]
gi|433000069|ref|ZP_20188599.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE223]
gi|433038754|ref|ZP_20226358.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE113]
gi|433058217|ref|ZP_20245276.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE124]
gi|433082698|ref|ZP_20269163.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE133]
gi|433087364|ref|ZP_20273748.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE137]
gi|433101289|ref|ZP_20287386.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE145]
gi|433115682|ref|ZP_20301486.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE153]
gi|433125319|ref|ZP_20310894.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE160]
gi|433139382|ref|ZP_20324653.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE167]
gi|433144363|ref|ZP_20329515.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE168]
gi|433149330|ref|ZP_20334366.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE174]
gi|433188564|ref|ZP_20372667.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE88]
gi|433207930|ref|ZP_20391612.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE97]
gi|433212634|ref|ZP_20396237.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE99]
gi|26108501|gb|AAN80703.1|AE016761_278 Hypothetical protein yebU [Escherichia coli CFT073]
gi|227837311|gb|EEJ47777.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
83972]
gi|300297505|gb|EFJ53890.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
185-1]
gi|300406341|gb|EFJ89879.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
45-1]
gi|305852496|gb|EFM52947.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
NC101]
gi|307553852|gb|ADN46627.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ABU 83972]
gi|315290364|gb|EFU49740.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
153-1]
gi|355420434|gb|AER84631.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
'clone D i2']
gi|355425354|gb|AER89550.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
'clone D i14']
gi|430908502|gb|ELC29895.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE15]
gi|430935274|gb|ELC55596.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE39]
gi|430953532|gb|ELC72430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE187]
gi|430964422|gb|ELC81869.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE188]
gi|430982741|gb|ELC99430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE201]
gi|431024436|gb|ELD37601.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE214]
gi|431039542|gb|ELD50362.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE220]
gi|431042664|gb|ELD53152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE224]
gi|431053036|gb|ELD62672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE230]
gi|431100677|gb|ELE05647.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE53]
gi|431128027|gb|ELE30319.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE60]
gi|431138754|gb|ELE40566.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE67]
gi|431148992|gb|ELE50265.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE72]
gi|431180369|gb|ELE80256.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE86]
gi|431191136|gb|ELE90521.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE87]
gi|431191968|gb|ELE91342.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE93]
gi|431244435|gb|ELF38743.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE169]
gi|431291947|gb|ELF82443.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE43]
gi|431329579|gb|ELG16865.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE63]
gi|431394975|gb|ELG78488.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE141]
gi|431433298|gb|ELH14970.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE194]
gi|431464098|gb|ELH44220.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE183]
gi|431480606|gb|ELH60325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE209]
gi|431482690|gb|ELH62392.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE207]
gi|431500955|gb|ELH79941.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE215]
gi|431507206|gb|ELH85492.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE218]
gi|431510086|gb|ELH88333.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE223]
gi|431552214|gb|ELI26176.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE113]
gi|431570860|gb|ELI43768.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE124]
gi|431603025|gb|ELI72452.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE133]
gi|431607084|gb|ELI76455.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE137]
gi|431620419|gb|ELI89296.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE145]
gi|431635208|gb|ELJ03423.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE153]
gi|431646704|gb|ELJ14196.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE160]
gi|431661760|gb|ELJ28572.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE167]
gi|431662909|gb|ELJ29677.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE168]
gi|431671994|gb|ELJ38267.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE174]
gi|431706607|gb|ELJ71177.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE88]
gi|431730697|gb|ELJ94259.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE97]
gi|431734916|gb|ELJ98292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE99]
Length = 481
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|194434523|ref|ZP_03066782.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 1012]
gi|417672336|ref|ZP_12321807.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 155-74]
gi|420347080|ref|ZP_14848486.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
965-58]
gi|194417235|gb|EDX33345.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 1012]
gi|332093311|gb|EGI98370.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 155-74]
gi|391272172|gb|EIQ31029.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
965-58]
Length = 479
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|191168496|ref|ZP_03030283.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B7A]
gi|193066047|ref|ZP_03047104.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E22]
gi|194429657|ref|ZP_03062175.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B171]
gi|218695401|ref|YP_002403068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
55989]
gi|251785283|ref|YP_002999587.1| 16S rRNA m[5]C1407 methyltransferase [Escherichia coli BL21(DE3)]
gi|254161895|ref|YP_003045003.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B
str. REL606]
gi|254288683|ref|YP_003054431.1| methyltransferase [Escherichia coli BL21(DE3)]
gi|386614391|ref|YP_006134057.1| hypothetical protein UMNK88_2306 [Escherichia coli UMNK88]
gi|407469636|ref|YP_006783921.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407481700|ref|YP_006778849.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410482249|ref|YP_006769795.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|415805167|ref|ZP_11501376.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
E128010]
gi|415825911|ref|ZP_11513267.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1357]
gi|416346857|ref|ZP_11679948.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4100B]
gi|417132416|ref|ZP_11977201.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0588]
gi|417155758|ref|ZP_11993887.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.0497]
gi|417172282|ref|ZP_12002315.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2608]
gi|417187714|ref|ZP_12012380.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
93.0624]
gi|417222802|ref|ZP_12026242.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.154]
gi|417247598|ref|ZP_12040354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
9.0111]
gi|417252317|ref|ZP_12044080.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0967]
gi|417581312|ref|ZP_12232117.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_B2F1]
gi|417623569|ref|ZP_12273874.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_H.1.8]
gi|417667223|ref|ZP_12316771.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_O31]
gi|417805354|ref|ZP_12452310.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. LB226692]
gi|417865288|ref|ZP_12510332.1| hypothetical protein C22711_2220 [Escherichia coli O104:H4 str.
C227-11]
gi|419142535|ref|ZP_13687282.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6A]
gi|419148387|ref|ZP_13693060.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6B]
gi|419278211|ref|ZP_13820465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10E]
gi|419289729|ref|ZP_13831824.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11A]
gi|419295062|ref|ZP_13837108.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11B]
gi|419300381|ref|ZP_13842382.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11C]
gi|419306478|ref|ZP_13848382.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11D]
gi|419311503|ref|ZP_13853370.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11E]
gi|419316860|ref|ZP_13858672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12A]
gi|419322990|ref|ZP_13864696.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12B]
gi|419328980|ref|ZP_13870595.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12C]
gi|419334530|ref|ZP_13876074.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12D]
gi|419340095|ref|ZP_13881570.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12E]
gi|419345451|ref|ZP_13886829.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13A]
gi|419349872|ref|ZP_13891216.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13B]
gi|419355267|ref|ZP_13896529.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13C]
gi|419360292|ref|ZP_13901513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13D]
gi|419365370|ref|ZP_13906536.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13E]
gi|419370239|ref|ZP_13911360.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14A]
gi|419375709|ref|ZP_13916738.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14B]
gi|419381025|ref|ZP_13921981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14C]
gi|419386299|ref|ZP_13927180.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14D]
gi|419869471|ref|ZP_14391675.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H2 str. CVM9450]
gi|420391517|ref|ZP_14890774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPEC C342-62]
gi|442598221|ref|ZP_21015994.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|450215327|ref|ZP_21895547.1| methyltransferase [Escherichia coli O08]
gi|254766864|sp|B7L7N7.1|RSMF_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096803|sp|A7ZMV8.2|RSMF_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|190901449|gb|EDV61211.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B7A]
gi|192926284|gb|EDV80921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E22]
gi|194412299|gb|EDX28603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B171]
gi|218352133|emb|CAU97871.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
55989]
gi|242377556|emb|CAQ32311.1| 16S rRNA m[5]C1407 methyltransferase [Escherichia coli BL21(DE3)]
gi|253973796|gb|ACT39467.1| predicted methyltransferase [Escherichia coli B str. REL606]
gi|253977990|gb|ACT43660.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
gi|320198015|gb|EFW72623.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4100B]
gi|323158681|gb|EFZ44695.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
E128010]
gi|323186416|gb|EFZ71764.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1357]
gi|332343560|gb|AEE56894.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|340740257|gb|EGR74482.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. LB226692]
gi|341918577|gb|EGT68190.1| hypothetical protein C22711_2220 [Escherichia coli O104:H4 str.
C227-11]
gi|345339935|gb|EGW72360.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_B2F1]
gi|345379481|gb|EGX11393.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_H.1.8]
gi|377994913|gb|EHV58034.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6B]
gi|377996844|gb|EHV59952.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6A]
gi|378129210|gb|EHW90582.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10E]
gi|378131660|gb|EHW93017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11A]
gi|378142149|gb|EHX03351.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11B]
gi|378149913|gb|EHX11033.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11D]
gi|378151760|gb|EHX12867.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11C]
gi|378158604|gb|EHX19622.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11E]
gi|378167353|gb|EHX28266.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12B]
gi|378170845|gb|EHX31720.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12A]
gi|378172253|gb|EHX33110.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12C]
gi|378186743|gb|EHX47366.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12D]
gi|378187369|gb|EHX47981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13A]
gi|378190017|gb|EHX50603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12E]
gi|378201992|gb|EHX62432.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13C]
gi|378202233|gb|EHX62672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13B]
gi|378205222|gb|EHX65637.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13D]
gi|378214034|gb|EHX74343.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13E]
gi|378218626|gb|EHX78897.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14A]
gi|378220633|gb|EHX80885.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14B]
gi|378229014|gb|EHX89164.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14C]
gi|378232122|gb|EHX92224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14D]
gi|386150270|gb|EIH01559.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0588]
gi|386168847|gb|EIH35363.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.0497]
gi|386179980|gb|EIH57454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2608]
gi|386181371|gb|EIH64134.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
93.0624]
gi|386202604|gb|EII01595.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.154]
gi|386208965|gb|EII19456.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
9.0111]
gi|386217892|gb|EII34377.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0967]
gi|388342676|gb|EIL08710.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H2 str. CVM9450]
gi|391313282|gb|EIQ70875.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPEC C342-62]
gi|397785470|gb|EJK96320.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_O31]
gi|406777411|gb|AFS56835.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407053997|gb|AFS74048.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407065671|gb|AFS86718.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|441653234|emb|CCQ01697.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|449318976|gb|EMD09033.1| methyltransferase [Escherichia coli O08]
Length = 479
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|407790923|ref|ZP_11138013.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Gallaecimonas
xiamenensis 3-C-1]
gi|407202207|gb|EKE72201.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Gallaecimonas
xiamenensis 3-C-1]
Length = 473
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 162/309 (52%), Gaps = 21/309 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ + + ++P +R NTLK D A+ + +G L+ + W G + D +P+G
Sbjct: 29 DFVAACQRPLRRAIRVNTLKISVADFAEQMAQKGWQLETIP-WCDTGFWLQRPDEDLPLG 87
Query: 151 ATPEYMAGFYMLQSASSFLPVMALA---PQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
PE++ G + +Q ASS LP AL + +V+D+AAAPG KTT +AALM N GL+
Sbjct: 88 NEPEHLLGLFYVQEASSMLPPQALWHCLSEAPAKVLDVAAAPGSKTTQLAALMNNQGLLV 147
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE SR+K L ANL R+GV+N +C++DG L +T D +LLDAPC G G I K
Sbjct: 148 ANEYSGSRVKVLHANLQRLGVSNCALCHFDGKVFGPALP-DTFDAILLDAPCGGEGTIRK 206
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + I S +Q+ LI +A + K GG +VYSTC++ EN+ V+ +
Sbjct: 207 DPDALKDWAQSHIDAISEVQQGLIESAFQAL----KVGGVLVYSTCTLNTQENQGVLAFL 262
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
+ + L +G E + + +P +++ +GFFVA ++K++
Sbjct: 263 AARFGEAVERVSL----EGLFDGAEQAL--TEQGELHIWPQIYDSEGFFVAAVRKLAKVD 316
Query: 388 KTSAGPQPS 396
P+PS
Sbjct: 317 V----PEPS 321
>gi|419013668|ref|ZP_13561023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1D]
gi|377858652|gb|EHU23491.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1D]
Length = 479
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E ++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAENLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|417138330|ref|ZP_11982063.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0259]
gi|417308301|ref|ZP_12095154.1| Ribosomal RNA small subunit methyltransferase F
(RRNA(Cytosine-C(5)-)-methyltransferase RsmF)
[Escherichia coli PCN033]
gi|338770151|gb|EGP24918.1| Ribosomal RNA small subunit methyltransferase F
(RRNA(Cytosine-C(5)-)-methyltransferase RsmF)
[Escherichia coli PCN033]
gi|386158315|gb|EIH14652.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0259]
Length = 479
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ WS+ G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWSEGGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|398799374|ref|ZP_10558665.1| NOL1/NOP2/sun family putative RNA methylase [Pantoea sp. GM01]
gi|398098790|gb|EJL89070.1| NOL1/NOP2/sun family putative RNA methylase [Pantoea sp. GM01]
Length = 474
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 163/303 (53%), Gaps = 22/303 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQV 147
EL + ++P LR NTLK D + G L P+ W G + D +
Sbjct: 24 ELQRFLAISQQPLRRSLRVNTLKISVDDFLVRTADYGWRLSPI-PWCAEGFWIERDDESL 82
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
P+G+ E+++G + +Q ASS LPV AL A + +V+D+AAAPG KTT +AALM+N G
Sbjct: 83 PLGSVAEHLSGLFYIQEASSMLPVTALFDAAPDARQVMDVAAAPGSKTTQMAALMRNEGA 142
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
I ANE ASR+K L AN+ R GV+N + ++DG L D +LLDAPCSG GV+
Sbjct: 143 ILANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP-ERFDAILLDAPCSGEGVV 201
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD + +L + + Q+ LI +A + + GG ++YSTC++ EN+ VI
Sbjct: 202 RKDADALRNWTLASTEAIAETQRDLIDSAFHAL----QPGGTLIYSTCTLNQIENQQVIH 257
Query: 326 YALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ L++R V++VP G + P E +P + + +GFFVA+L+K
Sbjct: 258 W-LQQRYPDAVEIVPL------NGLFAGADQALTP--EGFLHVFPQIFDSEGFFVARLRK 308
Query: 383 MSN 385
++
Sbjct: 309 TAS 311
>gi|432869033|ref|ZP_20089828.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE147]
gi|431410949|gb|ELG94092.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE147]
Length = 481
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 168/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHSL----RPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 312 K---TQAIPALPAP 322
>gi|432387252|ref|ZP_19630143.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE16]
gi|430907234|gb|ELC28733.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE16]
Length = 499
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|417149853|ref|ZP_11989771.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2264]
gi|386160865|gb|EIH22670.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2264]
Length = 479
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|422999907|ref|ZP_16990661.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 09-7901]
gi|354872878|gb|EHF33255.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 09-7901]
Length = 481
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|218558698|ref|YP_002391611.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S88]
gi|422749060|ref|ZP_16802972.1| NOL1/NOP2/sun family protein [Escherichia coli H252]
gi|146325691|sp|A1AC00.2|RSMF_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|146325694|sp|Q1RAV2.2|RSMF_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725333|sp|B7MBP2.1|RSMF_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218365467|emb|CAR03194.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
S88]
gi|323952336|gb|EGB48209.1| NOL1/NOP2/sun family protein [Escherichia coli H252]
Length = 479
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|386001458|ref|YP_005919757.1| NOL1/NOP2/sun family putative RNA methylase [Methanosaeta
harundinacea 6Ac]
gi|357209514|gb|AET64134.1| NOL1/NOP2/sun family putative RNA methylase [Methanosaeta
harundinacea 6Ac]
Length = 358
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 166/330 (50%), Gaps = 21/330 (6%)
Query: 56 SRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRR 115
SR+ + + + G G + E+ P +L +E+ +P P+ R NTLK R
Sbjct: 46 SRRRGIYPINANCGGMKGLERYR-----EVIPDFDL--FVEAIRRPLPVTARINTLKADR 98
Query: 116 RDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALA 175
L L V P S W GL + + + P G E + G +Q S + L+
Sbjct: 99 DRLTSRLRRGKVAFTPFS-WYPFGLRL-EVEKP-GNLLESLMGQIHIQEEISMASPVVLS 155
Query: 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN 235
P+ ERV+D+ AAPG KTT IA +M+N GL+ AN+ +R+ SL +N R G N V
Sbjct: 156 PEPGERVLDLCAAPGSKTTQIAMMMENRGLLVANDPANTRVASLRSNCERAGAVNVAVTR 215
Query: 236 YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295
YDG P DRVL+DAPC+G G+ KD +V SL+ LQ+ L+ A+
Sbjct: 216 YDGRRFPD----RGFDRVLVDAPCTGQGMARKDITVLGRWSLKRSLGIQRLQRALLRRAL 271
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK-RDVKLVPCGLD--FGRQGFVRFRE 352
+ ++SGG +VYSTC+ ENE V+ +AL + V+L + G G +
Sbjct: 272 QV----TRSGGTVVYSTCTFAPEENEGVVSWALGQVSGVRLQEASVRGLAGSPGLAEWAG 327
Query: 353 HRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
RF +E R+YPH ++ GFFVAKL K
Sbjct: 328 SRFGDEMELCTRYYPHQNDAGGFFVAKLIK 357
>gi|432543346|ref|ZP_19780195.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE236]
gi|432548836|ref|ZP_19785610.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE237]
gi|432622033|ref|ZP_19858067.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE76]
gi|432815529|ref|ZP_20049314.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE115]
gi|431074945|gb|ELD82482.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE236]
gi|431080656|gb|ELD87451.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE237]
gi|431159732|gb|ELE60276.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE76]
gi|431364585|gb|ELG51116.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE115]
Length = 481
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|417596964|ref|ZP_12247612.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
3030-1]
gi|345355276|gb|EGW87487.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
3030-1]
Length = 479
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDTLPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|309794215|ref|ZP_07688639.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
145-7]
gi|308122120|gb|EFO59382.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
145-7]
Length = 481
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPVAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|188494314|ref|ZP_03001584.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
53638]
gi|188489513|gb|EDU64616.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
53638]
Length = 481
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|417662425|ref|ZP_12312006.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
AA86]
gi|330911643|gb|EGH40153.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
AA86]
Length = 479
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|422755171|ref|ZP_16808996.1| NOL1/NOP2/sun family protein [Escherichia coli H263]
gi|323956465|gb|EGB52207.1| NOL1/NOP2/sun family protein [Escherichia coli H263]
Length = 479
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|387607453|ref|YP_006096309.1| hypothetical protein EC042_2000 [Escherichia coli 042]
gi|284921753|emb|CBG34826.1| conserved hypothetical protein [Escherichia coli 042]
Length = 481
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|168234498|ref|ZP_02659556.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205331591|gb|EDZ18355.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 479
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 164/314 (52%), Gaps = 24/314 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIEPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPLRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLWL 261
Query: 328 LKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ V+ +P G F E H +P +++ +GFFVA+L+KMS+
Sbjct: 262 QETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS 313
Query: 386 SKKTSAGPQPSETV 399
A P P V
Sbjct: 314 ---LPAMPAPGYKV 324
>gi|422335244|ref|ZP_16416245.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
4_1_47FAA]
gi|373243729|gb|EHP63228.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
4_1_47FAA]
Length = 481
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 168/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 MRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F + H +P +++ +GFFVA+L+
Sbjct: 261 RW-LKETYPDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQP 395
K +K A P P
Sbjct: 312 K---TKAIPALPAP 322
>gi|374635946|ref|ZP_09707533.1| RNA methylase, NOL1/NOP2/sun family [Methanotorris formicicus
Mc-S-70]
gi|373560689|gb|EHP86945.1| RNA methylase, NOL1/NOP2/sun family [Methanotorris formicicus
Mc-S-70]
Length = 264
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 161/279 (57%), Gaps = 25/279 (8%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L + L N+GV L + V S IGATPEY+ G+Y +QS
Sbjct: 6 IRVNTLKINPETLKNRLENKGVVLK--ETFLPYAFEVLKSPFSIGATPEYLFGYYFVQSI 63
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P + + V+DM AAPGGKTT+++ LM N G+I + E+K+SR+KSL AN++R
Sbjct: 64 SSMIPPIVLNPSKDDLVLDMCAAPGGKTTHLSQLMGNEGVIVSVEIKSSRMKSLKANINR 123
Query: 226 MGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS 284
M + N I+ N + L K L D++LLDAPCSG + KD+S +K EDI CS
Sbjct: 124 MDIANVIMLNMNALHLKEKNLRF---DKILLDAPCSGN--VIKDKSRNVTK--EDIIYCS 176
Query: 285 YLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD-VKLVPCGLDFG 343
QK+LI ID++ K GG +VYSTCS ENE VI++ L KRD V+L+P F
Sbjct: 177 NRQKELIDVGIDLL----KEGGTLVYSTCSSEEEENEGVIEHILNKRDNVELLPIENSFE 232
Query: 344 RQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
R + ++ T R P + FF+AKL K
Sbjct: 233 RINVI-------EGGIKGTLRVVPP---NEPFFIAKLIK 261
>gi|331647332|ref|ZP_08348426.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli M605]
gi|331044115|gb|EGI16251.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli M605]
Length = 481
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|417121380|ref|ZP_11970808.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0246]
gi|386148232|gb|EIG94669.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0246]
Length = 479
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|374297158|ref|YP_005047349.1| NOL1/NOP2/sun family putative RNA methylase [Clostridium
clariflavum DSM 19732]
gi|359826652|gb|AEV69425.1| NOL1/NOP2/sun family putative RNA methylase [Clostridium
clariflavum DSM 19732]
Length = 456
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 159/302 (52%), Gaps = 20/302 (6%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E E ++S+E PR LR N+LK D + L+P++ W+ G + + P
Sbjct: 18 EYEEFVKSYELPRYYGLRVNSLKVSVEDFLKI---SPFELEPIA-WTNDGFYYREGENP- 72
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
G P Y AG Y +Q S+ LP + + E V+D+ AAPGGKT +AA MK GL+ AN
Sbjct: 73 GKHPYYYAGLYYIQEPSAMLPGAIIDAKPGENVLDLCAAPGGKTVQMAAAMKGKGLLVAN 132
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
++ + R+K+L N+ GV+N IV N L + G + D++L+DAPCSG G+ KDE
Sbjct: 133 DINSERVKALVKNIELCGVSNAIVTNDSPQNLSRKFG-SFFDKILVDAPCSGEGMFRKDE 191
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
S CS +Q+ ++ A +M+ K GGY+VYSTC+ ENE +I L+
Sbjct: 192 DAAKSWEKFKCDLCSGMQRDILSYAHEML----KPGGYLVYSTCTFSPEENEQIIAEFLE 247
Query: 330 KR---DVKLVP--CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K ++ VP G+ GR + +P L+KT R +PH +G FVA L K
Sbjct: 248 KHSEYELVEVPKTAGIADGRPWWA-----DNNPELKKTARLWPHKVKGEGHFVALLHKKD 302
Query: 385 NS 386
S
Sbjct: 303 GS 304
>gi|417287293|ref|ZP_12074580.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
TW07793]
gi|386249626|gb|EII95797.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
TW07793]
Length = 479
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|91211057|ref|YP_541043.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
UTI89]
gi|117623991|ref|YP_852904.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
O1]
gi|237705787|ref|ZP_04536268.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
3_2_53FAA]
gi|386599631|ref|YP_006101137.1| NOL1/NOP2/sun family putative RNA methylase [Escherichia coli
IHE3034]
gi|386604201|ref|YP_006110501.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
UM146]
gi|419946661|ref|ZP_14463052.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
HM605]
gi|422359647|ref|ZP_16440284.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
110-3]
gi|422838249|ref|ZP_16886222.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H397]
gi|432358165|ref|ZP_19601394.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE4]
gi|432362791|ref|ZP_19605962.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE5]
gi|432573862|ref|ZP_19810344.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE55]
gi|432588090|ref|ZP_19824446.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE58]
gi|432597812|ref|ZP_19834088.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE62]
gi|432754573|ref|ZP_19989124.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE22]
gi|432778703|ref|ZP_20012946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE59]
gi|432787649|ref|ZP_20021781.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE65]
gi|432821085|ref|ZP_20054777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE118]
gi|432827229|ref|ZP_20060881.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE123]
gi|433005282|ref|ZP_20193712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE227]
gi|433007780|ref|ZP_20196198.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE229]
gi|433153900|ref|ZP_20338855.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE176]
gi|433163610|ref|ZP_20348355.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE179]
gi|433168731|ref|ZP_20353364.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE180]
gi|91072631|gb|ABE07512.1| hypothetical protein YebU [Escherichia coli UTI89]
gi|115513115|gb|ABJ01190.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|226900544|gb|EEH86803.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
3_2_53FAA]
gi|294490935|gb|ADE89691.1| NOL1/NOP2/sun family putative RNA methylase [Escherichia coli
IHE3034]
gi|307626685|gb|ADN70989.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
UM146]
gi|315286546|gb|EFU45981.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
110-3]
gi|371614173|gb|EHO02658.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H397]
gi|388412369|gb|EIL72453.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
HM605]
gi|430878149|gb|ELC01581.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE4]
gi|430887330|gb|ELC10157.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE5]
gi|431108573|gb|ELE12545.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE55]
gi|431120423|gb|ELE23421.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE58]
gi|431130679|gb|ELE32762.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE62]
gi|431302774|gb|ELF91953.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE22]
gi|431326856|gb|ELG14201.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE59]
gi|431337366|gb|ELG24454.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE65]
gi|431367932|gb|ELG54400.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE118]
gi|431372478|gb|ELG58140.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE123]
gi|431515187|gb|ELH93014.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE227]
gi|431524313|gb|ELI01260.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE229]
gi|431675357|gb|ELJ41502.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE176]
gi|431688697|gb|ELJ54215.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE179]
gi|431689055|gb|ELJ54572.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE180]
Length = 481
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|110641953|ref|YP_669683.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 536]
gi|110343545|gb|ABG69782.1| hypothetical protein YebU [Escherichia coli 536]
Length = 481
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFANGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|300938813|ref|ZP_07153523.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
21-1]
gi|432680414|ref|ZP_19915791.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE143]
gi|300456246|gb|EFK19739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
21-1]
gi|431221344|gb|ELF18665.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE143]
Length = 481
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 164/301 (54%), Gaps = 29/301 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANICRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F +E H +P +++ +GFFVA+L+
Sbjct: 261 LW-LKETYPDAVEFLPLGDLFPGANKALTKEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 K 382
K
Sbjct: 312 K 312
>gi|320100535|ref|YP_004176127.1| ribosomal RNA methyltransferase NOP2 [Desulfurococcus mucosus DSM
2162]
gi|319752887|gb|ADV64645.1| ribosomal RNA methyltransferase NOP2 [Desulfurococcus mucosus DSM
2162]
Length = 344
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 182/339 (53%), Gaps = 17/339 (5%)
Query: 57 RKEYVQQLK--LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTR 114
R+ YV+ + ++L YGY +++ ++M P E +EL+E+FEKP +R NTL
Sbjct: 11 REIYVEPSRQAVELALEYGYLPYMVQRYIDMLGPREAVELLEAFEKPVRQVVRANTLLVE 70
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDS--QVPIGATPEYMAGFYMLQ-SASSFLPV 171
+L L + G L+ + W+ V ++ IG+T EY+ GFY + A+S +PV
Sbjct: 71 PGELKTRLESLGFRLEEIP-WAPGSFWVAEAPRSPSIGSTHEYLKGFYYVHRDATSLIPV 129
Query: 172 -MALAPQEKERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGV 228
+ L K V+D AAPGGK T+ A ++K G +YAN+ RLKSL ++ RM +
Sbjct: 130 LLLLGDGYKGDVLDACAAPGGKATFTAQILKERGGGTVYANDYVLYRLKSLIGHVLRMKL 189
Query: 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQK 288
N +V + ELP +G R+LLDAPCSG G IS D KT S+ D+ +
Sbjct: 190 DNIVVTWGNAAELPGRVG-RRFKRILLDAPCSGEGRISVDPGRKTRTSILDLAIMVKREV 248
Query: 289 QLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK-KRDVKLV-PCGLDFGRQG 346
+L+ + IDM+D G I YSTCSI ENE V+ L+ +RDV++ P L F
Sbjct: 249 ELLGSLIDMLDEE----GVIAYSTCSIAPEENEYVVAKILESRRDVEVADPGPLPFNHSR 304
Query: 347 FV-RFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ +R + LEK R +PH H + GF LK++
Sbjct: 305 WLTSYRSMEYPRELEKCIRIWPHRHGLFGFTTCLLKRVG 343
>gi|417602427|ref|ZP_12252997.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_94C]
gi|345350093|gb|EGW82368.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_94C]
Length = 479
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRKLIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|291283017|ref|YP_003499835.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O55:H7 str. CB9615]
gi|290762890|gb|ADD56851.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O55:H7 str. CB9615]
Length = 506
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 172/321 (53%), Gaps = 46/321 (14%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 55 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 113
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 114 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 170
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 171 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 229
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 230 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 285
Query: 325 DYALKKR---DVKLVPCGLDF-------GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ LK+ V+ +P G F +GF+ +P +++ +G
Sbjct: 286 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFL---------------NVFPQIYDCEG 329
Query: 375 FFVAKLKKMSNSKKTSAGPQP 395
FFVA+L+K ++ A P P
Sbjct: 330 FFVARLRK---TQAIPALPTP 347
>gi|170769367|ref|ZP_02903820.1| ribosomal RNA small subunit methyltransferase F [Escherichia
albertii TW07627]
gi|170121691|gb|EDS90622.1| ribosomal RNA small subunit methyltransferase F [Escherichia
albertii TW07627]
Length = 479
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 166/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + D +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERSDDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNSPQRVMDVAAAPGSKTTQIAARMNNEGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q++LI +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+K
Sbjct: 261 LKETYPDAVEFLPLGDLFSGADKALTEEGFLH--------IFPQIYDCEGFFVARLRK-- 310
Query: 385 NSKKTSAGPQP 395
++ A P P
Sbjct: 311 -TQTIPALPTP 320
>gi|146325692|sp|Q0TGZ7.2|RSMF_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFANGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|440287221|ref|YP_007339986.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440046743|gb|AGB77801.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 490
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 182/340 (53%), Gaps = 23/340 (6%)
Query: 60 YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
YV + S + +EFL M + + I + ++P +R NTLK D
Sbjct: 9 YVWYSPVAQNSVFLPDEFLAQMREAMPAHLAFDDFIAACQRPLRRSIRVNTLKISVADFL 68
Query: 120 DVLINRGVNLDPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
++ G L P+ W G + + +P+G+T E+++G + +Q ASS LPV AL
Sbjct: 69 ALVAPYGWQLTPV-PWCAEGFWIEREDEESLPLGSTAEHLSGLFYIQEASSMLPVAALFT 127
Query: 177 QEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
E+ +RV+D+AAAPG KTT IAA M N G I ANE ASR+K L AN+ R G+ N +
Sbjct: 128 GEELPKRVMDVAAAPGSKTTQIAARMGNQGAILANEFSASRVKVLHANISRCGIANVALT 187
Query: 235 NYDGNELPKVLGL---NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI 291
++DG +V G + D +LLDAPCSG GV+ KD + S++ + + Q++LI
Sbjct: 188 HFDG----RVFGAAVPESFDAILLDAPCSGEGVVRKDPDALKNWSVQSNLEIAATQRELI 243
Query: 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFR 351
+A + K GG +VYSTC++ ENE+V+ + L++ P ++ + F
Sbjct: 244 DSAFHAL----KPGGTLVYSTCTLNRDENESVLAWLLEQ-----YPQAVEVESLATL-FP 293
Query: 352 EHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
+ + E +P +++ +GFFVA+L+K+++ K A
Sbjct: 294 SAKEALTPEGFLHVFPQIYDCEGFFVARLRKIASVKPLPA 333
>gi|218699594|ref|YP_002407223.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
IAI39]
gi|386624462|ref|YP_006144190.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O7:K1 str. CE10]
gi|226725335|sp|B7NS84.1|RSMF_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218369580|emb|CAR17349.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
IAI39]
gi|349738200|gb|AEQ12906.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O7:K1 str. CE10]
Length = 479
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 29/301 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 K 382
K
Sbjct: 310 K 310
>gi|417707470|ref|ZP_12356515.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri VA-6]
gi|420330958|ref|ZP_14832634.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-1770]
gi|333003634|gb|EGK23170.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri VA-6]
gi|391254833|gb|EIQ13991.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-1770]
Length = 479
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++ G +V G + D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFGG----RVFGASVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|417689821|ref|ZP_12339049.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
5216-82]
gi|332089959|gb|EGI95059.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
5216-82]
Length = 325
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|191172977|ref|ZP_03034511.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
F11]
gi|190906688|gb|EDV66293.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
F11]
Length = 479
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|300982043|ref|ZP_07175862.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
200-1]
gi|422377099|ref|ZP_16457342.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
60-1]
gi|432471131|ref|ZP_19713178.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE206]
gi|432713542|ref|ZP_19948583.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE8]
gi|433077912|ref|ZP_20264463.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE131]
gi|300307345|gb|EFJ61865.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
200-1]
gi|324011607|gb|EGB80826.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
60-1]
gi|430998349|gb|ELD14590.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE206]
gi|431257345|gb|ELF50269.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE8]
gi|431597583|gb|ELI67489.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE131]
Length = 481
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|419255052|ref|ZP_13797575.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10A]
gi|378102094|gb|EHW63778.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10A]
Length = 331
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 171/318 (53%), Gaps = 38/318 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQPS 396
+L+K ++ A P P+
Sbjct: 307 RLRK---TQAIPALPPPN 321
>gi|343514433|ref|ZP_08751505.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. N418]
gi|342800206|gb|EGU35748.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. N418]
Length = 459
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 172/338 (50%), Gaps = 36/338 (10%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
+ + I + ++P +R NTLK + ++G L P+ W G + +S VP
Sbjct: 11 MADFIAACQRPLRKSVRVNTLKLSVEEFKQRAASKGWQLYPV-PWCDEGFWIEADESVVP 69
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLI 206
+G T E+M G + +Q ASS +PV AL E V+DMAAAPG KTT +AA M N G++
Sbjct: 70 LGNTAEHMTGLFYIQEASSMMPVSALFMGEASYNAVLDMAAAPGSKTTQVAACMNNDGVL 129
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R GV NT + NYDG L D VL+DAPCSG G +
Sbjct: 130 IANEFSASRVKVLHANIERCGVRNTALSNYDGRVFGAWLP-EHFDAVLIDAPCSGEGTVR 188
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + + + S QK LI +A + K GG +VYSTC++ V EN+ V +
Sbjct: 189 KDADAMKNWNKASVISISDTQKDLIESAFHAL----KPGGVMVYSTCTLSVEENQQVCHH 244
Query: 327 ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFFVAKL 380
LK LV F +E P EK +P V++ +GFFVA++
Sbjct: 245 -LKDTFGDLV---------AFDSLKE--LFPEAEKAITEEGFLHIFPQVYDCEGFFVARI 292
Query: 381 KKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEEN 418
+K+ G P+ V+++ + S + KT+++
Sbjct: 293 RKL--------GSAPAPEVKKRLGKFPFSKANDKTQQD 322
>gi|89074302|ref|ZP_01160792.1| putative sun/nucleolar protein family protein [Photobacterium sp.
SKA34]
gi|89050006|gb|EAR55540.1| putative sun/nucleolar protein family protein [Photobacterium sp.
SKA34]
Length = 476
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 160/303 (52%), Gaps = 21/303 (6%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DS 145
+++ E I + P +R NTLK D + NRG L P+ W G + +
Sbjct: 23 LDIDEFIACCKTPLRRSIRVNTLKISVEDFLVRVANRGWTLTPVP-WCDTGFWIEREDED 81
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNT 203
V +G T E+MAG + +Q ASS +PV AL + V+DMA+APG KTT IA+ M+N
Sbjct: 82 TVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNNALDCVLDMASAPGSKTTQIASAMQNR 141
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G + ANE+ ASR+K L +NL R GV N + ++DG + D +LLDAPCSG G
Sbjct: 142 GALVANELAASRIKVLHSNLQRCGVHNAALTHFDGCVF-GTWAPESFDSILLDAPCSGEG 200
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
I KDE + SL I + + +Q+ LI++A + K+ G +VYSTC++ +EN+ V
Sbjct: 201 AIRKDEDAMANWSLASIDEIAEVQRNLIISAFQAL----KTSGVMVYSTCTLNQSENQDV 256
Query: 324 IDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ +K V+ P F + H YP V + +GFFVA+++
Sbjct: 257 CHFLKEKFGDAVEFEPLNTLFDGADKSLTEDGFLH--------VYPQVFDSEGFFVARIR 308
Query: 382 KMS 384
K++
Sbjct: 309 KLA 311
>gi|309788247|ref|ZP_07682851.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 1617]
gi|146325705|sp|Q32F19.2|RSMF_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|308923629|gb|EFP69132.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 1617]
Length = 479
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLRLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDIAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 TILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGTNKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|194469686|ref|ZP_03075670.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194456050|gb|EDX44889.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
Length = 513
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 160/300 (53%), Gaps = 21/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIEPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPLRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLWL 295
Query: 328 LKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ V+ +P G F E H +P +++ +GFFVA+L+KMS+
Sbjct: 296 QETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS 347
>gi|168259905|ref|ZP_02681878.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|205351006|gb|EDZ37637.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
Length = 479
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S + + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPKSNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLWL 261
Query: 328 LKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ V+ +P G F E H +P +++ +GFFVA+L+KMS+
Sbjct: 262 QETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS 313
>gi|150401879|ref|YP_001325645.1| NOL1/NOP2/sun family RNA methylase [Methanococcus aeolicus
Nankai-3]
gi|150014582|gb|ABR57033.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
aeolicus Nankai-3]
Length = 335
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 134/209 (64%), Gaps = 13/209 (6%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L ++G+ L+ + + + +++VP+GATPEY+ G+Y LQS
Sbjct: 76 IRVNTLKITPEKLKARLTDKGIELE--DTFLEYLFKIKNTKVPVGATPEYLFGYYYLQSI 133
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P EK+ V+DM +APGGKTT++ LM N G++ ANE+ R+KSL +N+ R
Sbjct: 134 SSVIPSLVLNPSEKDMVLDMCSAPGGKTTHLCQLMNNKGIVVANEVNRKRIKSLKSNIFR 193
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
M +TNTI+ N D L N+ D++LLDAPCSG + KD++ + SK DI+ CS
Sbjct: 194 MNITNTIILNSDALRLKY---FNSFDKILLDAPCSGNDI--KDKNREVSK--RDIRYCSL 246
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCS 314
QK +I I+++ K+GG +VYSTCS
Sbjct: 247 RQKNMINIGIELL----KTGGELVYSTCS 271
>gi|82777228|ref|YP_403577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella dysenteriae
Sd197]
gi|81241376|gb|ABB62086.1| putative nucleolar proteins [Shigella dysenteriae Sd197]
Length = 481
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLRLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDIAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 TILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGTNKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|417084775|ref|ZP_11952414.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
cloneA_i1]
gi|355351950|gb|EHG01137.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
cloneA_i1]
Length = 479
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWALTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|218705334|ref|YP_002412853.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
UMN026]
gi|293405330|ref|ZP_06649322.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FVEC1412]
gi|298380972|ref|ZP_06990571.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FVEC1302]
gi|331663326|ref|ZP_08364236.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA143]
gi|417586712|ref|ZP_12237484.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_C165-02]
gi|226725338|sp|B7NBI3.1|RSMF_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218432431|emb|CAR13323.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
UMN026]
gi|291427538|gb|EFF00565.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FVEC1412]
gi|298278414|gb|EFI19928.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FVEC1302]
gi|331059125|gb|EGI31102.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA143]
gi|345338215|gb|EGW70646.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_C165-02]
Length = 479
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 167/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----CPGGTLVYSTCTLNQEENEAVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 RW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPAP 320
>gi|448678053|ref|ZP_21689243.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula argentinensis DSM
12282]
gi|445773728|gb|EMA24761.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula argentinensis DSM
12282]
Length = 303
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 148/290 (51%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
I++ E+P P +R NT+K + L + + DP+ W GL V P GA
Sbjct: 17 FIDACERPLPSAVRVNTIKATVERVRTALADADIAYDPVD-WHD-GLFVLPEDSP-GANW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S +P L PQ ERV D AAPG KTT +AA M++ G + A +
Sbjct: 74 PYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAARMEDAGEVVATDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R+ +L N R+G T V + DG N K G DR L+D PCS G I K+
Sbjct: 134 GRISALRTNTERLGATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTL 193
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
SL ++ S +QK ++ A+++ ++ GG +VYSTC+ ENEAV+DY L +
Sbjct: 194 EDWSLSHVEGISGVQKGILKRAVEV----TEPGGTVVYSTCTFAPEENEAVLDYVLDEVA 249
Query: 333 VKLVPCGLDFGR-QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V L G +++ RF PS+ +R YPH ++ GFF AKL+
Sbjct: 250 CEIVDYDLPLDHASGITEWQDERFDPSVTNAKRIYPHHNDTGGFFCAKLE 299
>gi|432449848|ref|ZP_19692120.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE193]
gi|433033573|ref|ZP_20221305.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE112]
gi|430981424|gb|ELC98152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE193]
gi|431553563|gb|ELI27489.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE112]
Length = 481
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE+V
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENESVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 312 K---TQAIPALPTP 322
>gi|375261535|ref|YP_005020705.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella oxytoca
KCTC 1686]
gi|365911013|gb|AEX06466.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella oxytoca
KCTC 1686]
Length = 477
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 168/316 (53%), Gaps = 21/316 (6%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + I + ++P +R NTLK D ++ L P+ W
Sbjct: 11 EFLAQMRAAMPTHLSFDDFIAACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PW 69
Query: 136 SKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPG 190
+ G + + +P+G+T E+++G + +Q ASS LPV AL Q +RV+D+AAAPG
Sbjct: 70 CEEGFWIEREDEDDLPLGSTAEHLSGLFYIQEASSMLPVAALFANGQMPKRVMDVAAAPG 129
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAA M N G I ANE ASR+K L AN+ R G++N + ++DG L
Sbjct: 130 SKTTQIAARMGNEGGILANEYSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ECF 188
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D +LLDAPCSG GV+ KD + S E + + Q++LI +A + + GG +VY
Sbjct: 189 DAILLDAPCSGEGVVRKDPDALKNWSPESNAEIAVTQRELIDSAFHAL----RPGGTLVY 244
Query: 311 STCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
STC++ ENE V++ L + + V++VP G F + E H +P
Sbjct: 245 STCTLNRQENEEVVNGLLARYPQAVEVVPLGSLFPQASEALTEEGFLH--------VFPQ 296
Query: 369 VHNMDGFFVAKLKKMS 384
+ + +GFFVA+L+K +
Sbjct: 297 IFDCEGFFVARLRKTA 312
>gi|301025409|ref|ZP_07188961.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
196-1]
gi|299880085|gb|EFI88296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
196-1]
Length = 464
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 13 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 128
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 129 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 184
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 185 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 240
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 241 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 291
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 292 RLRK---TQAIPALPAP 305
>gi|445240234|ref|ZP_21407492.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
gi|444891184|gb|ELY14454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
Length = 375
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 63 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 121
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 122 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 181
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 182 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 240
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 241 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 295
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 296 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 347
Query: 385 N 385
+
Sbjct: 348 S 348
>gi|417115847|ref|ZP_11966983.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2741]
gi|386141266|gb|EIG82418.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2741]
Length = 479
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 164/304 (53%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERNDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|387612323|ref|YP_006115439.1| hypothetical protein ETEC_1868 [Escherichia coli ETEC H10407]
gi|419175464|ref|ZP_13719309.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7B]
gi|421774194|ref|ZP_16210807.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
AD30]
gi|422766401|ref|ZP_16820128.1| NOL1/NOP2/sun family protein [Escherichia coli E1520]
gi|309702059|emb|CBJ01373.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
gi|323937093|gb|EGB33373.1| NOL1/NOP2/sun family protein [Escherichia coli E1520]
gi|378034995|gb|EHV97559.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7B]
gi|408460824|gb|EKJ84602.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
AD30]
Length = 479
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
+I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 VILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
V + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 VVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>gi|374711369|ref|ZP_09715803.1| RNA methylase [Sporolactobacillus inulinus CASD]
Length = 458
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 163/305 (53%), Gaps = 26/305 (8%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E ++E+ R + LR N LK L + G +L P+ S G + P
Sbjct: 20 EARTFFATYEQDRALGLRVNPLKIEPEQLRAL---SGFHLQPIPFCSN-GFYYQEEDAP- 74
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
G P + AG Y +Q S+ LAPQ ERV+D+ AAPGGK+T +AA MKN+GL+ AN
Sbjct: 75 GKHPYHQAGLYYIQEPSAMFVADTLAPQPGERVLDLCAAPGGKSTQLAARMKNSGLLIAN 134
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG---LNTVDRVLLDAPCSGTGVIS 266
E R K+L+ N+ RMG+TN +V NE+P+ L D+VL+DAPCSG G+
Sbjct: 135 EPYPKRAKALSENIERMGITNAVVT----NEMPERLADYFPGYFDKVLVDAPCSGEGMFR 190
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD T S + +C+ LQ+ ++ A M+ ++ G +VYSTC+ E+E +I
Sbjct: 191 KDPEAATYWSPAHVAECAALQEHILEDAYVML----RTEGTLVYSTCTFAPEEDERMIAA 246
Query: 327 ALKKR-DVKLVP----CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
LKK D++L+P + GR + + SL KT R +PH+ +G FVAKL+
Sbjct: 247 LLKKHPDLELLPIEKYANVSDGRPQWADDEQ-----SLTKTARLWPHLLRGEGHFVAKLR 301
Query: 382 KMSNS 386
K ++
Sbjct: 302 KHGSA 306
>gi|257096807|sp|B1LD37.2|RSMF_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|422828859|ref|ZP_16877028.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B093]
gi|371611960|gb|EHO00478.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B093]
Length = 481
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 29/301 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 K 382
K
Sbjct: 312 K 312
>gi|300899079|ref|ZP_07117364.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
198-1]
gi|419932391|ref|ZP_14449706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
576-1]
gi|432353745|ref|ZP_19597019.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE2]
gi|432402098|ref|ZP_19644851.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE26]
gi|432426269|ref|ZP_19668774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE181]
gi|432460888|ref|ZP_19703039.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE204]
gi|432476011|ref|ZP_19718011.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE208]
gi|432489442|ref|ZP_19731323.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE213]
gi|432517899|ref|ZP_19755091.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE228]
gi|432537997|ref|ZP_19774900.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE235]
gi|432631569|ref|ZP_19867498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE80]
gi|432641214|ref|ZP_19877051.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE83]
gi|432666201|ref|ZP_19901783.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE116]
gi|432770799|ref|ZP_20005143.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE50]
gi|432774921|ref|ZP_20009203.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE54]
gi|432839457|ref|ZP_20072944.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE140]
gi|432886774|ref|ZP_20100863.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE158]
gi|432912873|ref|ZP_20118683.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE190]
gi|432961853|ref|ZP_20151643.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE202]
gi|433018793|ref|ZP_20207038.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE105]
gi|433053337|ref|ZP_20240532.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE122]
gi|433063227|ref|ZP_20250160.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE125]
gi|433068116|ref|ZP_20254917.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE128]
gi|433158865|ref|ZP_20343712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE177]
gi|433178476|ref|ZP_20362888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE82]
gi|433203410|ref|ZP_20387191.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE95]
gi|300357288|gb|EFJ73158.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
198-1]
gi|388417411|gb|EIL77255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
576-1]
gi|430875986|gb|ELB99507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE2]
gi|430926928|gb|ELC47515.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE26]
gi|430956609|gb|ELC75283.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE181]
gi|430989601|gb|ELD06055.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE204]
gi|431005952|gb|ELD20959.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE208]
gi|431021478|gb|ELD34801.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE213]
gi|431051947|gb|ELD61609.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE228]
gi|431069911|gb|ELD78231.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE235]
gi|431171037|gb|ELE71218.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE80]
gi|431183479|gb|ELE83295.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE83]
gi|431201576|gb|ELF00273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE116]
gi|431315999|gb|ELG03898.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE50]
gi|431318636|gb|ELG06331.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE54]
gi|431389609|gb|ELG73320.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE140]
gi|431416819|gb|ELG99290.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE158]
gi|431440302|gb|ELH21631.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE190]
gi|431474809|gb|ELH54615.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE202]
gi|431532856|gb|ELI09360.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE105]
gi|431571733|gb|ELI44603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE122]
gi|431583061|gb|ELI55071.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE125]
gi|431585808|gb|ELI57755.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE128]
gi|431678899|gb|ELJ44817.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE177]
gi|431704840|gb|ELJ69465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE82]
gi|431722478|gb|ELJ86444.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE95]
Length = 481
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 167/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----CPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 RW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 312 K---TQAIPALPAP 322
>gi|437819509|ref|ZP_20843060.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
gi|435307536|gb|ELO82661.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
Length = 479
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 162/301 (53%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLSDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>gi|90111341|ref|NP_416349.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia
coli str. K-12 substr. MG1655]
gi|170081491|ref|YP_001730811.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
K-12 substr. DH10B]
gi|238901050|ref|YP_002926846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
BW2952]
gi|388477909|ref|YP_490097.1| methyltransferase [Escherichia coli str. K-12 substr. W3110]
gi|417262064|ref|ZP_12049552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.3916]
gi|417272767|ref|ZP_12060116.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.4168]
gi|417277041|ref|ZP_12064367.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2303]
gi|417291484|ref|ZP_12078765.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B41]
gi|417613256|ref|ZP_12263717.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_EH250]
gi|417618394|ref|ZP_12268814.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
G58-1]
gi|417634751|ref|ZP_12284965.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_S1191]
gi|417943508|ref|ZP_12586756.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH140A]
gi|417974931|ref|ZP_12615732.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH001]
gi|418303104|ref|ZP_12914898.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
UMNF18]
gi|418957798|ref|ZP_13509721.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J53]
gi|419154026|ref|ZP_13698594.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6C]
gi|419159335|ref|ZP_13703844.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6D]
gi|419164556|ref|ZP_13709013.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6E]
gi|419808928|ref|ZP_14333814.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O32:H37 str. P4]
gi|422772290|ref|ZP_16825978.1| NOL1/NOP2/sun family protein [Escherichia coli E482]
gi|425115218|ref|ZP_18517026.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0566]
gi|425119937|ref|ZP_18521643.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0569]
gi|425272947|ref|ZP_18664380.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW15901]
gi|425283429|ref|ZP_18674489.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW00353]
gi|442590260|ref|ZP_21009042.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|450244492|ref|ZP_21900343.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S17]
gi|3915994|sp|P76273.2|RSMF_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725337|sp|B1XHA3.1|RSMF_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|259495488|sp|C4ZZJ2.1|RSMF_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|85675140|dbj|BAA15648.2| predicted methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|87081985|gb|AAC74905.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia
coli str. K-12 substr. MG1655]
gi|169889326|gb|ACB03033.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
DH10B]
gi|238862668|gb|ACR64666.1| predicted methyltransferase [Escherichia coli BW2952]
gi|323940499|gb|EGB36690.1| NOL1/NOP2/sun family protein [Escherichia coli E482]
gi|339415202|gb|AEJ56874.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
UMNF18]
gi|342364834|gb|EGU28933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH140A]
gi|344195540|gb|EGV49609.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH001]
gi|345362767|gb|EGW94912.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_EH250]
gi|345376767|gb|EGX08700.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
G58-1]
gi|345388242|gb|EGX18053.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_S1191]
gi|359332313|dbj|BAL38760.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
MDS42]
gi|377998393|gb|EHV61485.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6C]
gi|378009379|gb|EHV72335.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6D]
gi|378010638|gb|EHV73583.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6E]
gi|384379407|gb|EIE37275.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J53]
gi|385157858|gb|EIF19848.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O32:H37 str. P4]
gi|386225191|gb|EII47526.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.3916]
gi|386236467|gb|EII68443.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.4168]
gi|386240530|gb|EII77454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2303]
gi|386253806|gb|EIJ03496.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B41]
gi|408194206|gb|EKI19694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW15901]
gi|408202717|gb|EKI27779.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW00353]
gi|408569636|gb|EKK45623.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0566]
gi|408570878|gb|EKK46834.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0569]
gi|441609541|emb|CCP94955.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|449321177|gb|EMD11192.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S17]
Length = 479
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|300951450|ref|ZP_07165288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
116-1]
gi|300956658|ref|ZP_07168934.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
175-1]
gi|331642446|ref|ZP_08343581.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H736]
gi|386280895|ref|ZP_10058559.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
4_1_40B]
gi|386595355|ref|YP_006091755.1| RNA methylase [Escherichia coli DH1]
gi|387621555|ref|YP_006129182.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli DH1]
gi|419941928|ref|ZP_14458580.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 75]
gi|423704700|ref|ZP_17679123.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H730]
gi|432417058|ref|ZP_19659669.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE44]
gi|432564032|ref|ZP_19800622.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE51]
gi|432627419|ref|ZP_19863399.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE77]
gi|432637061|ref|ZP_19872937.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE81]
gi|432685621|ref|ZP_19920923.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE156]
gi|432691773|ref|ZP_19927004.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE161]
gi|432704590|ref|ZP_19939694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE171]
gi|432737323|ref|ZP_19972089.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE42]
gi|432955267|ref|ZP_20147207.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE197]
gi|433048113|ref|ZP_20235482.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE120]
gi|260449044|gb|ACX39466.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli DH1]
gi|300316536|gb|EFJ66320.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
175-1]
gi|300449302|gb|EFK12922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
116-1]
gi|315136478|dbj|BAJ43637.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli DH1]
gi|331039244|gb|EGI11464.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H736]
gi|385705343|gb|EIG42408.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H730]
gi|386122078|gb|EIG70691.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
4_1_40B]
gi|388399343|gb|EIL60144.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 75]
gi|430940420|gb|ELC60603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE44]
gi|431094624|gb|ELE00255.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE51]
gi|431164112|gb|ELE64513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE77]
gi|431172050|gb|ELE72201.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE81]
gi|431222656|gb|ELF19932.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE156]
gi|431227248|gb|ELF24385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE161]
gi|431243896|gb|ELF38224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE171]
gi|431284423|gb|ELF75281.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE42]
gi|431467938|gb|ELH47944.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE197]
gi|431566219|gb|ELI39258.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE120]
Length = 481
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|419923594|ref|ZP_14441531.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-15]
gi|388393387|gb|EIL54769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-15]
Length = 481
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----HPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|432661067|ref|ZP_19896713.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE111]
gi|431200183|gb|ELE98909.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE111]
Length = 481
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
+I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 VILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
V + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 VVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|417712308|ref|ZP_12361297.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-272]
gi|417716994|ref|ZP_12365912.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-227]
gi|417827620|ref|ZP_12474186.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
J1713]
gi|420320069|ref|ZP_14821907.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2850-71]
gi|333006730|gb|EGK26227.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-272]
gi|333018648|gb|EGK37941.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-227]
gi|335575906|gb|EGM62173.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
J1713]
gi|391251109|gb|EIQ10325.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2850-71]
Length = 479
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++ G +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFGG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|422781264|ref|ZP_16834049.1| NOL1/NOP2/sun family protein [Escherichia coli TW10509]
gi|323977982|gb|EGB73068.1| NOL1/NOP2/sun family protein [Escherichia coli TW10509]
Length = 479
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 164/304 (53%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|453065630|gb|EMF06591.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia marcescens
VGH107]
Length = 478
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 170/320 (53%), Gaps = 25/320 (7%)
Query: 88 PVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-- 143
P EL + I + ++P LR NTLK D ++ + L+P+ W G +
Sbjct: 22 PAELAMEDFIAACQRPLRRSLRVNTLKISVADFLVLVQDYDWRLEPI-PWCAEGFWIERD 80
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMK 201
D ++ +G+ E+++G + +Q ASS LPV AL + RV+D+AAAPG KTT IAALM
Sbjct: 81 DEELRLGSAAEHLSGLFYIQEASSMLPVSALFAGDAAPNRVLDVAAAPGSKTTQIAALMG 140
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N G I ANE ASR+K L AN+ R GV NT + ++DG L + D +LLDAPCSG
Sbjct: 141 NQGGIVANEYSASRVKVLHANISRCGVKNTALTHFDGRVFGAALP-ESFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD ++ S E + + + Q++LI +A + GG +VYSTC++ EN+
Sbjct: 200 EGVVRKDPDAMSNWSPESVTEIAATQRELIDSAFHAL----APGGVMVYSTCTLNAQENQ 255
Query: 322 AVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
V+ + L V + P G F E H +P +++ +GFFVA+
Sbjct: 256 QVVRWLLDTYGDAVSVEPLGELFPGADKALTAEGFLH--------VFPQIYDSEGFFVAR 307
Query: 380 LKKMSNSKKTSAGPQPSETV 399
L+K + + P+P+ V
Sbjct: 308 LRK---QRAVAPLPKPTYKV 324
>gi|415809119|ref|ZP_11501920.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
LT-68]
gi|323175088|gb|EFZ60702.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
LT-68]
Length = 479
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|170683942|ref|YP_001743410.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SMS-3-5]
gi|170521660|gb|ACB19838.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
SMS-3-5]
Length = 481
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|149191346|ref|ZP_01869599.1| m5C methyltransferase [Vibrio shilonii AK1]
gi|148834825|gb|EDL51809.1| m5C methyltransferase [Vibrio shilonii AK1]
Length = 448
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 162/318 (50%), Gaps = 42/318 (13%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK D + + G L + W + G + +S VP+G
Sbjct: 3 DFIAACQRPLRKSIRVNTLKISIDDFLNKALANGWELTTI-PWCEEGFWIDADESTVPLG 61
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+MAG + +Q ASS LP AL + E V+DMAAAPG KTT IAALM N G++ A
Sbjct: 62 NTAEHMAGLFYIQEASSMLPPSALFCGDDKFEAVLDMAAAPGSKTTQIAALMNNEGVLVA 121
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGTGV 264
NE ASR+K L AN+ R GV+N + NYD G LP+ D +LLDAPCSG G
Sbjct: 122 NEFAASRVKVLHANIERCGVSNVAMSNYDARVFGGWLPE-----QFDAILLDAPCSGEGT 176
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + SL + + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 177 VRKDADAMKNWSLASTKDIAQTQKDLIESAFHAL----KVGGSLVYSTCALSPEENQQVA 232
Query: 325 DYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR------RFYPHVHNMDGFFVA 378
+ + FG + + F P EK +P ++ +GFF+A
Sbjct: 233 LHLTQT-----------FGNAVEITSLQQLF-PDAEKATTQEGFLHVFPQTYDSEGFFIA 280
Query: 379 KLKKMSNSKKTSAGPQPS 396
K KKT+A P P+
Sbjct: 281 KF------KKTAAYPAPT 292
>gi|422799120|ref|ZP_16847619.1| NOL1/NOP2/sun family protein [Escherichia coli M863]
gi|323968602|gb|EGB64008.1| NOL1/NOP2/sun family protein [Escherichia coli M863]
Length = 481
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 164/304 (53%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERNDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|212223865|ref|YP_002307101.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212008822|gb|ACJ16204.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 312
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 152/291 (52%), Gaps = 11/291 (3%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E E KP +R NTLK + + L + L+P+ W + G + +
Sbjct: 26 EFWEFIVKPLRQSIRVNTLKAPLEVVVERL-SEDYKLEPIP-WVREGFFINVDN--LARV 81
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
PE+ G Q ASS +P + L P+ E V+DMAAAPG KT IA M+N G I AN+ K
Sbjct: 82 PEHSLGLVFGQEASSMIPPVVLDPKPGELVLDMAAAPGSKTGQIAQYMENEGCIIANDPK 141
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R L ANL+RMGV NT V DG + NT DRVLLDAPCS G+I K
Sbjct: 142 IDRANILIANLNRMGVLNTRVTTRDGAYFGRF--ENTFDRVLLDAPCSSVGMIRKSWKFL 199
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
T L + K +QK+LILAA + K GG +VYSTC+I ENE V+DY L+K D
Sbjct: 200 TGWRLRGVVKYMNIQKRLILAAYKAL----KPGGVLVYSTCTIDPLENEEVVDYLLRKTD 255
Query: 333 VKLVPCGLDFGRQGFVRFREHR-FHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+L L V E R + L KT R +P+ ++ + FF+AK+ K
Sbjct: 256 ARLDDIDLPVKTSEPVLEWEGRTYSEELRKTLRIHPNDNDTEAFFIAKIVK 306
>gi|383177988|ref|YP_005455993.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sonnei 53G]
gi|414575611|ref|ZP_11432811.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3233-85]
gi|415848889|ref|ZP_11526389.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella sonnei
53G]
gi|418264593|ref|ZP_12884908.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
str. Moseley]
gi|420358135|ref|ZP_14859128.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3226-85]
gi|420363170|ref|ZP_14864072.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
4822-66]
gi|146325708|sp|Q3Z2H4.2|RSMF_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|323166480|gb|EFZ52243.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella sonnei
53G]
gi|391285269|gb|EIQ43849.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3226-85]
gi|391286842|gb|EIQ45376.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3233-85]
gi|391295287|gb|EIQ53456.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
4822-66]
gi|397901745|gb|EJL18085.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
str. Moseley]
Length = 479
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|74311854|ref|YP_310273.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sonnei
Ss046]
gi|73855331|gb|AAZ88038.1| putative nucleolar proteins [Shigella sonnei Ss046]
Length = 481
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|242239507|ref|YP_002987688.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Dickeya dadantii
Ech703]
gi|242131564|gb|ACS85866.1| RNA methylase, NOL1/NOP2/sun family [Dickeya dadantii Ech703]
Length = 481
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 173/318 (54%), Gaps = 23/318 (7%)
Query: 76 EFLIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
EFL A+ + P M+ + + ++P +R NTLK D ++ G L P+
Sbjct: 12 EFL-AAMQHIMPAHLSMDAFVAACQRPLRRSIRVNTLKIGVADFLALVEPYGWRLAPI-P 69
Query: 135 WSKVGLVVYDSQ---VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAP 189
W G + ++ + +G E++ G + +Q ASS LPV AL ERV+DMAAAP
Sbjct: 70 WCDEGFWLLNADEAVLRLGNALEHLGGLFYIQEASSMLPVNALFHGGITPERVLDMAAAP 129
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT +AA M+N G I ANE +SR+K L ANLHR GV+NT + ++DG +VL
Sbjct: 130 GSKTTQLAARMRNQGGIVANEYSSSRVKVLHANLHRCGVSNTALTHFDGRIFGEVLP-EH 188
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D VLLDAPCSG GV+ KD + + S E I + Q++LIL+A + K GG ++
Sbjct: 189 FDAVLLDAPCSGEGVVRKDPAAMSHWSPESIVDIAATQRELILSAFHAL----KPGGVLI 244
Query: 310 YSTCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
YSTC++ EN+ V + L + ++ P LD F E + E +P
Sbjct: 245 YSTCTLNHQENQDVCRWLLTQFPHACEIEP--LD------NLFPEAHHAATAEGFLHVFP 296
Query: 368 HVHNMDGFFVAKLKKMSN 385
+++ +GFF+A+L+K ++
Sbjct: 297 QIYDSEGFFIARLRKTAS 314
>gi|409095857|ref|ZP_11215881.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus zilligii AN1]
Length = 315
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 153/291 (52%), Gaps = 11/291 (3%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E E KP +R NTLK + + L L+P+ W++ G + +
Sbjct: 26 EFWEFMIKPLRQSIRVNTLKAPLEAVLERL-KEEFELEPIP-WAREGFFINADN--LAKV 81
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
PE+ G Q ASS +P +AL P+ E V+DMAAAPG KT IA M+N G I AN+
Sbjct: 82 PEHSLGLIFGQEASSMIPPVALDPKPGELVLDMAAAPGSKTGQIAQYMENEGCIVANDPN 141
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R L ANL+RMGV V DG E + NT DRVLLDAPCS G+I K
Sbjct: 142 MGRANVLIANLNRMGVLIARVTTRDGAEFARF--ENTFDRVLLDAPCSSVGLIRKKWRFL 199
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
+ SL+ + K +QK+LILA + K GG +VYSTC+I ENE V+DY L+K D
Sbjct: 200 EAWSLKGVVKYMNIQKKLILAGYKAL----KPGGTLVYSTCTIDPLENEEVVDYLLRKTD 255
Query: 333 VKLVPCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+L L + + + + P L+K R +P+ ++ + FF+AK+ K
Sbjct: 256 ARLEKIELPVKTSEPVLEWEGKEYSPELKKALRIHPNDNDTEAFFIAKIVK 306
>gi|438128973|ref|ZP_20873244.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|434941950|gb|ELL48318.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
Length = 507
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 166/315 (52%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +G FVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGLFVARLRKMS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 347 S---LPAMPAPGYKV 358
>gi|432861964|ref|ZP_20086724.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE146]
gi|431405711|gb|ELG88944.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE146]
Length = 481
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|378955354|ref|YP_005212841.1| hypothetical protein SPUL_1667 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357205965|gb|AET54011.1| hypothetical protein SPUL_1667 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
Length = 513
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 166/315 (52%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 62 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +G FVA+L+KMS
Sbjct: 295 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGLFVARLRKMS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 347 S---LPAMPAPGYKV 358
>gi|416281592|ref|ZP_11645900.1| Ribosomal RNA small subunit methyltransferase F [Shigella boydii
ATCC 9905]
gi|320181122|gb|EFW56041.1| Ribosomal RNA small subunit methyltransferase F [Shigella boydii
ATCC 9905]
Length = 479
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/314 (35%), Positives = 168/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNTPQRVMDVAAAPGSKTTQIAARMNNEGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSGTGV 264
ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG GV
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPAP 320
>gi|404375195|ref|ZP_10980383.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
1_1_43]
gi|404291256|gb|EJZ48146.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
1_1_43]
Length = 481
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 165/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
+I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 VILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
V + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 VVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKK 382
+L+K
Sbjct: 309 RLRK 312
>gi|424816001|ref|ZP_18241152.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia
fergusonii ECD227]
gi|325497021|gb|EGC94880.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia
fergusonii ECD227]
Length = 479
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 167/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + L P+ W + G + + +P+
Sbjct: 28 DFLSACQRPLRRSIRVNTLKISVADFLQLTATYNWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGNLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPAP 320
>gi|432485589|ref|ZP_19727505.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE212]
gi|432670914|ref|ZP_19906445.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE119]
gi|433173697|ref|ZP_20358231.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE232]
gi|431015986|gb|ELD29533.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE212]
gi|431210988|gb|ELF08971.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE119]
gi|431693587|gb|ELJ58999.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE232]
Length = 481
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ+ V+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQQ---VMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|354557871|ref|ZP_08977128.1| Fmu (Sun) domain protein [Desulfitobacterium metallireducens DSM
15288]
gi|353549545|gb|EHC18986.1| Fmu (Sun) domain protein [Desulfitobacterium metallireducens DSM
15288]
Length = 480
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 153/295 (51%), Gaps = 21/295 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRG-VNLDPLSKWSKVGLVVYDSQVP 148
E I S++ PR LR NTLK A+ + R L+P+S W+K G + + P
Sbjct: 21 EFSAFIASYDSPRLNGLRVNTLKLS----AEAFLKRWPFELEPIS-WAKDGFYYHYTTQP 75
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
G P + AG Y LQ S+ + L PQ ERV+D+AAAPGGK+T IAA + GL+++
Sbjct: 76 -GQHPYHAAGVYYLQEPSAMAVLHYLDPQPGERVLDLAAAPGGKSTGIAARLNRKGLLWS 134
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE+ +R + L N+ R G N IV N + + L D+VLLDAPCSG G+ KD
Sbjct: 135 NEIHPTRARILAQNMDRWGAPNVIVSNENPDHLANHF-RGFFDKVLLDAPCSGEGMFRKD 193
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
V SLE +Q C++ Q +I +A +V + GG +VYSTC+ ENE VI L
Sbjct: 194 PEVMEEWSLEHVQSCAHRQALIIESAAALV----RPGGRLVYSTCTFAPQENEEVILRFL 249
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPS-LEKTRRFYPHVHNMDGFFVAKLKK 382
+ + P L FV HPS L + R YPH +G F+ L K
Sbjct: 250 ESHP-EFSPLSLPDPAPDFV-------HPSTLPEGVRLYPHRIRGEGHFIVALLK 296
>gi|157145396|ref|YP_001452715.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter koseri
ATCC BAA-895]
gi|167012766|sp|A8AFL6.1|RSMF_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|157082601|gb|ABV12279.1| hypothetical protein CKO_01138 [Citrobacter koseri ATCC BAA-895]
Length = 479
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 23/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G +L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVTDFLALTAPYGWSLTPV-PWCEEGFWIERDDEESLPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ER++D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERIMDVAAAPGSKTTQIAARMNNQGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+E + Q++LI +A + + GG +VYSTC++ ENE+V +
Sbjct: 206 DPDALKNWSVESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENESVCLW- 260
Query: 328 LKK---RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+K +
Sbjct: 261 LKETYPEAVEFLPLGDLFPGAERALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
>gi|308187115|ref|YP_003931246.1| rRNA methyltransferase F [Pantoea vagans C9-1]
gi|308057625|gb|ADO09797.1| putative rRNA methyltransferase F [Pantoea vagans C9-1]
Length = 460
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 163/305 (53%), Gaps = 28/305 (9%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
+ I ++P +R NTLK D L P+ W G + D +P
Sbjct: 11 FTQFIAYSQQPLRRSIRVNTLKISVADFLSQTAGYDWQLTPV-PWCDEGFWISREDESLP 69
Query: 149 IGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+G+ E+++G + +Q ASS LPV AL A E V+DMAAAPG KTT IAA M N G+I
Sbjct: 70 LGSVAEHLSGLFYIQEASSMLPVTALFDAQPEVSAVMDMAAAPGSKTTQIAARMGNQGVI 129
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SR+K L AN+ R GV+N+ + ++D G LP+ D +LLDAPCSG
Sbjct: 130 LANEFSSSRVKVLHANISRCGVSNSALTHFDARVFGPALPE-----QFDAILLDAPCSGE 184
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
GVI KD + SL ++ + Q+ L+ +A + K G +VYSTC++ EN+
Sbjct: 185 GVIRKDADALKNWSLASTEEIAATQRDLLDSAFHAL----KPSGTLVYSTCTLNQIENQQ 240
Query: 323 VIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
VID+ L++ V++VP LD G E P E +P + + +GFFVA+L
Sbjct: 241 VIDWLLQRYPDAVEVVP--LD----GLFEGAERAATP--EGYLHVFPQMFDSEGFFVARL 292
Query: 381 KKMSN 385
+K ++
Sbjct: 293 RKTAS 297
>gi|378580682|ref|ZP_09829338.1| ribosomal RNA small subunit methyltransferase F [Pantoea stewartii
subsp. stewartii DC283]
gi|377816691|gb|EHT99790.1| ribosomal RNA small subunit methyltransferase F [Pantoea stewartii
subsp. stewartii DC283]
Length = 475
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 163/311 (52%), Gaps = 28/311 (9%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
L + I+ ++P LR NTLK + G L P+ W + G + D +P
Sbjct: 26 LQQFIDISQQPLRRSLRVNTLKISVSAFLAQTAHYGWQLTPV-PWCEDGFWISREDESLP 84
Query: 149 IGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+G+ E+++G + +Q ASS LPV AL A + + +DMAAAPG KTT IAA M N G++
Sbjct: 85 LGSVAEHLSGLFYIQEASSMLPVTALFDACPDAQHFMDMAAAPGSKTTQIAARMHNQGIV 144
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SR+K L AN+ R GVTNT + ++D G LP+ D +LLDAPCSG
Sbjct: 145 LANEFSSSRVKVLHANITRCGVTNTALTHFDARVFGPALPE-----QFDAILLDAPCSGE 199
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
GVI KD + SL + Q+ LI +A + K GG +VYSTC++ EN+
Sbjct: 200 GVIRKDADALKNWSLASTHDIAQTQRDLIDSAFHAL----KPGGTLVYSTCTLNPIENQQ 255
Query: 323 VIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
V+ + L + V++ P F E H +P + + +GFFVA+L
Sbjct: 256 VVAWLLARYPAAVEVAPLTTLFPGAEQAATPEGYLH--------VFPQLFDSEGFFVARL 307
Query: 381 KKMSNSKKTSA 391
+K ++ ++ A
Sbjct: 308 RKTASVERLPA 318
>gi|422973383|ref|ZP_16975767.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TA124]
gi|371597136|gb|EHN85961.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TA124]
Length = 481
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|387889047|ref|YP_006319345.1| IMP dehydrogenase / GMP reductase domain protein [Escherichia
blattae DSM 4481]
gi|414595708|ref|ZP_11445322.1| ribosomal RNA small subunit methyltransferase F [Escherichia
blattae NBRC 105725]
gi|386923880|gb|AFJ46834.1| IMP dehydrogenase / GMP reductase domain protein [Escherichia
blattae DSM 4481]
gi|403193333|dbj|GAB82974.1| ribosomal RNA small subunit methyltransferase F [Escherichia
blattae NBRC 105725]
Length = 482
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 158/300 (52%), Gaps = 23/300 (7%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-----DSQVP 148
I + ++P LR NTLK D + G L P+ W G V ++ +P
Sbjct: 30 FIAACQRPLRRSLRVNTLKISVADFLQLTAPLGWQLTPI-PWCAEGFWVTTGDDDENSLP 88
Query: 149 IGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+G+ E+++G + +Q ASS LPV AL A ERV+DMAAAPG KTT IAA M N G+I
Sbjct: 89 LGSYAEHLSGLFYIQEASSMLPVTALFDAVPRPERVMDMAAAPGSKTTQIAARMANRGMI 148
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R G++NT + ++DG L T D +LLDAPCSG GV+
Sbjct: 149 LANEYAASRVKVLHANISRCGISNTALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVR 207
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + S + Q+ LI +A + K GG +VYSTC++ EN+ +
Sbjct: 208 KDPDALRNWSPRSNLDIAATQRALIDSAFHAL----KPGGTLVYSTCTLNREENQQTCHW 263
Query: 327 ALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L++ V++ P F G E H +P +++ +GFFVA+L+K +
Sbjct: 264 LLEQYPGAVEITPLTDLFPGAGDALTPEGFLH--------VFPQIYDCEGFFVARLRKTA 315
>gi|88859583|ref|ZP_01134223.1| hypothetical protein PTD2_21407 [Pseudoalteromonas tunicata D2]
gi|88818600|gb|EAR28415.1| hypothetical protein PTD2_21407 [Pseudoalteromonas tunicata D2]
Length = 527
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 174/337 (51%), Gaps = 24/337 (7%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ-- 146
+ L + + S + P LR NTLK D N + P+ W + G Q
Sbjct: 71 LSLDDYLTSCQSPLRPALRVNTLKMSVADFKTYAANHDWQITPV-PWCEEGFWYQRPQAQ 129
Query: 147 --VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER---VIDMAAAPGGKTTYIAALMK 201
+ IG T +++G +Q ASS LPV AL Q ++DMAAAPG KT+ IAA MK
Sbjct: 130 QNLSIGNTDIHLSGAIYIQEASSMLPVFALQHQNDLTDCILLDMAAAPGSKTSQIAAQMK 189
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
NTG++ ANE +SRLKSL+AN+ R+G+ N + ++D + + +LLDAPCSG
Sbjct: 190 NTGVLVANEFSSSRLKSLSANMQRLGIANVALSHFDAAVFGPYME-QSFSHILLDAPCSG 248
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
G + KD + S+E Q+ + +QKQLI +A + K+GG +VYSTC++ EN+
Sbjct: 249 EGTVRKDPDALKNWSIESNQQIAQVQKQLIESAFYAL----KTGGTLVYSTCTLTPLENQ 304
Query: 322 AVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
V Y L ++ LD F + + + E +P +++ +GFFVAK K
Sbjct: 305 EVCQYLLDTFAGQIEVVKLD------DLFFDAKRAATSEGYLHIWPQLYDTEGFFVAKFK 358
Query: 382 KMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEEN 418
K S+S P+P +T + Q P + D +T N
Sbjct: 359 KSSHSSH----PKP-QTKKGQFPFTLYGKKDAQTLLN 390
>gi|432793038|ref|ZP_20027123.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE78]
gi|432798995|ref|ZP_20033018.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE79]
gi|431339782|gb|ELG26836.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE78]
gi|431343862|gb|ELG30818.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE79]
Length = 481
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 162/301 (53%), Gaps = 29/301 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----CPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 261 RW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 K 382
K
Sbjct: 312 K 312
>gi|429095941|ref|ZP_19158047.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 582]
gi|426282281|emb|CCJ84160.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 582]
Length = 479
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 167/313 (53%), Gaps = 27/313 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK + + G L P+ W G + D +P+G
Sbjct: 29 DFIAACQRPLRRSIRVNTLKISVEAFLAQVESYGWQLTPV-PWCAEGFWIARDDEALPLG 87
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
+T E+++G + +Q ASS LPV AL AP ERV+D+AAAPG KTT IAALM+N G
Sbjct: 88 STAEHLSGLFYIQEASSMLPVTALFADGNAP---ERVMDVAAAPGSKTTQIAALMQNQGF 144
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+
Sbjct: 145 ILANEYSASRVKVLHANISRCGIRNVGLTHFDGRVFGAALP-EQFDAILLDAPCSGEGVV 203
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD + S++ Q+ + Q++LI +A + GG +VYSTC++ + EN+ +
Sbjct: 204 RKDPDALRNWSVQSNQEIAATQRELIDSAFHAL----APGGTLVYSTCTLNLEENQQTVR 259
Query: 326 YALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ L + + L +G E + E +P +++ +GFFVA+L+K +
Sbjct: 260 WLLARYPQAVETLSL----EGLFPGAEAAL--TEEGFLHVFPQIYDCEGFFVARLRKTA- 312
Query: 386 SKKTSAGPQPSET 398
S P P+ T
Sbjct: 313 ----SVAPLPAPT 321
>gi|416897755|ref|ZP_11927403.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_7v]
gi|327252957|gb|EGE64611.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_7v]
Length = 479
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 164/304 (53%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERNDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|397658640|ref|YP_006499342.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
E718]
gi|394346912|gb|AFN33033.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
E718]
Length = 462
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 163/299 (54%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ L P+ W + G + + +P+
Sbjct: 13 DFIAACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPVP-WCEEGFWIEREDEDDLPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL Q +RV+D+AAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFADGQMPKRVMDVAAAPGSKTTQIAARMGNEGGIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 132 ANEYSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ECFDAILLDAPCSGEGVVRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q++LI +A + + GG +VYSTC++ ENE V++
Sbjct: 191 DPDALKNWSPESNAEIAVTQRELIDSAFHAL----RPGGTLVYSTCTLNRQENEEVVNGL 246
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V++VP G F + E H +P + + +GFFVA+L+K +
Sbjct: 247 LARYPQAVEVVPLGSLFPQASEALTEEGFLH--------VFPQIFDCEGFFVARLRKTA 297
>gi|343511741|ref|ZP_08748894.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio scophthalmi
LMG 19158]
gi|342797049|gb|EGU32705.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio scophthalmi
LMG 19158]
Length = 459
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 24/332 (7%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
+ + I + ++P +R NTLK + ++G L P+ W G + +S VP
Sbjct: 11 MADFIAACQRPLRKSVRVNTLKLSVEEFKQRAASKGWQLYPV-PWCDEGFWIEADESVVP 69
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLI 206
+G T E+M G + +Q ASS +PV AL E V+DMAAAPG KTT +AA M N G++
Sbjct: 70 LGNTAEHMTGLFYIQEASSMMPVSALFMGESSYNAVLDMAAAPGSKTTQVAACMNNDGIL 129
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R GV NT + NYDG L D VL+DAPCSG G +
Sbjct: 130 IANEFSASRVKVLHANIERCGVRNTALSNYDGRVFGAWLP-EHFDAVLIDAPCSGEGTVR 188
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + + + S QK LI +A + K GG +VYSTC++ + EN+ V +
Sbjct: 189 KDADAMKNWNKASVISISDTQKDLIESAFHAL----KPGGVMVYSTCTLSIEENQQVCHH 244
Query: 327 ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
LK LV D + F E + E +P V++ +GFFVA+++K+
Sbjct: 245 -LKDTFGDLV--AFDSLKD---LFPEAEKAITEEGFLHIFPQVYDCEGFFVARIRKL--- 295
Query: 387 KKTSAGPQPSETVEQQTPESNVSNGDKKTEEN 418
G P+ V+++ + S + KT+++
Sbjct: 296 -----GSAPAPEVKKRLGKFPFSKANDKTQQD 322
>gi|416260694|ref|ZP_11640304.1| Ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae CDC 74-1112]
gi|420380396|ref|ZP_14879862.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 225-75]
gi|320177052|gb|EFW52072.1| Ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae CDC 74-1112]
gi|391302357|gb|EIQ60219.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 225-75]
Length = 479
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R N LK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNALKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|301645651|ref|ZP_07245579.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
146-1]
gi|301076080|gb|EFK90886.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
146-1]
Length = 481
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCGEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|437352493|ref|ZP_20747725.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|435212709|gb|ELN95675.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
Length = 444
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 161/302 (53%), Gaps = 26/302 (8%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYML 162
+R NTLK D ++ G +L P+ W G + + +P+G+T E+++G + +
Sbjct: 6 IRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPLGSTAEHLSGLFYI 64
Query: 163 QSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220
Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I ANE ASR+K L
Sbjct: 65 QEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLH 124
Query: 221 ANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDI 280
AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ KD + S E
Sbjct: 125 ANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRKDPDALKNWSPESN 183
Query: 281 QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR---DVKLVP 337
+ Q++L+ +A + + GG +VYSTC++ ENE V + LK+ V+ +P
Sbjct: 184 LDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW-LKETYADAVEFLP 238
Query: 338 CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSE 397
G F E H +P +++ +GFFVA+L+KMS+ A P P
Sbjct: 239 LGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMSS---LPAMPAPGY 287
Query: 398 TV 399
V
Sbjct: 288 KV 289
>gi|419958501|ref|ZP_14474565.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae GS1]
gi|388606759|gb|EIM35965.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae GS1]
Length = 480
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 161/298 (54%), Gaps = 23/298 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D++ G L P+ W + G + + +P+
Sbjct: 28 DFVAACQRPLRRSIRVNTLKISVGAFLDLVSPYGWQLTPV-PWCEEGFWIERDDEESLPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGSQPERVMDVAAAPGSKTTQIAARMNNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIHNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+E + + Q++LI +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSVESNLEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNRDENEDVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
LK+R V+ +P F E H +P +++ +GFFVA+L+K
Sbjct: 261 LKQRYVDAVEFLPLDTLFDSASHAATPEGFLH--------VFPQIYDCEGFFVARLRK 310
>gi|333926908|ref|YP_004500487.1| ribosomal RNA small subunit methyltransferase F [Serratia sp. AS12]
gi|333931862|ref|YP_004505440.1| ribosomal RNA small subunit methyltransferase F [Serratia
plymuthica AS9]
gi|386328731|ref|YP_006024901.1| Ribosomal RNA small subunit methyltransferase F [Serratia sp. AS13]
gi|333473469|gb|AEF45179.1| Ribosomal RNA small subunit methyltransferase F [Serratia
plymuthica AS9]
gi|333490968|gb|AEF50130.1| Ribosomal RNA small subunit methyltransferase F [Serratia sp. AS12]
gi|333961064|gb|AEG27837.1| Ribosomal RNA small subunit methyltransferase F [Serratia sp. AS13]
Length = 478
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 25/317 (7%)
Query: 88 PVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-- 143
P EL + I + ++P LR NTLK D ++ + L+P+ W G +
Sbjct: 22 PAELSMDDFIAACQRPLRRSLRVNTLKISVADFQALVNDYDWRLEPI-PWCAEGFWIERE 80
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMAL-APQEK-ERVIDMAAAPGGKTTYIAALMK 201
D ++ +G+ E+++G + +Q ASS LPV AL A +EK RV+D+AAAPG KTT IAALM
Sbjct: 81 DEELRLGSAAEHLSGLFYIQEASSMLPVSALFADREKPHRVLDVAAAPGSKTTQIAALMN 140
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N G I ANE ASR+K L AN+ R GV N + ++DG L + D +LLDAPCSG
Sbjct: 141 NQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRVFGAALP-ESFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD ++ S E + + Q++LI +A + GG +VYSTC++ EN+
Sbjct: 200 EGVVRKDPDAMSNWSPESVAAIAATQRELIDSAFHAL----APGGVMVYSTCTLNAQENQ 255
Query: 322 AVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
+++ L V + P G F E H +P +++ +GFFVA+
Sbjct: 256 QIVNGLLATYGDAVSIEPLGELFPGAEKALTTEGFLH--------VFPQIYDSEGFFVAR 307
Query: 380 LKKMSNSKKTSAGPQPS 396
L+K + + P+PS
Sbjct: 308 LRK---NHSVTPLPKPS 321
>gi|257051428|ref|YP_003129261.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM
12940]
gi|256690191|gb|ACV10528.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM
12940]
Length = 302
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 147/284 (51%), Gaps = 9/284 (3%)
Query: 100 KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGF 159
+P P +R NTLKT L G+ + + W GL+ P G+ Y+ G+
Sbjct: 23 RPLPSVVRVNTLKTTVERAKTALETEGITYETV-DWHD-GLLRLPDDNP-GSNWPYVQGW 79
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSL 219
Q S LP + L P +RV D AAPG KTT +AALM + G I A + RL +L
Sbjct: 80 LHGQEEVSALPPVVLDPDPGDRVWDATAAPGSKTTQLAALMDDEGAIVATDNNLGRLSAL 139
Query: 220 TANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLE 278
+N R+GVTN V N D N K D L+DAPCS G I K+ SL+
Sbjct: 140 RSNAERLGVTNLAVTNEDARNHSLKPFDGRQYDHALVDAPCSCEGTIRKNPDALAQWSLD 199
Query: 279 DIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338
+ + QK ++ A+++ +K GG +VYSTC+ ENEAV+D+AL++ D +LV
Sbjct: 200 HVSGIAGAQKGILRRAVEV----TKPGGTVVYSTCTFAPEENEAVLDHALEETDARLVSS 255
Query: 339 GLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
L R G + F PS+ K R YPH+++ GFFVAKL+
Sbjct: 256 DLPLDSRPGVTEWDGETFDPSVRKAHRVYPHLNDTGGFFVAKLE 299
>gi|448491986|ref|ZP_21608654.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
californiensis DSM 19288]
gi|445692204|gb|ELZ44385.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
californiensis DSM 19288]
Length = 319
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 152/297 (51%), Gaps = 13/297 (4%)
Query: 91 LMELIESF----EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
L++ +++F ++P P +RTN + + + GV DP+ W GL
Sbjct: 10 LVDDVDAFRAACDRPLPSVVRTNGIAATPARVREAFDEGGVAYDPV-DWHD-GLFRLPEG 67
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
P G P Y+ G+ Q S LP +ALAP+ ERV D AAPG KTT IA M + G +
Sbjct: 68 NPGGNWP-YVHGWTHGQEEVSVLPTLALAPRPGERVWDACAAPGSKTTQIADAMDDEGTV 126
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVI 265
AN+ RL +L N R+G+TN IV N D N K L + DR L+DAPCS G
Sbjct: 127 VANDNNLGRLSALRHNAERLGITNAIVTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTC 186
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
K+ V +L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D
Sbjct: 187 RKNPDVLDQWTLDHVHAVAGIQKGVLARAVQA----TRPGGVVVYSTCTFAPEENEAVLD 242
Query: 326 YALKKRDVKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ L D +LV L G + + S+ + +R YPH ++ GFF AKL+
Sbjct: 243 HVLANEDCELVEFDLPLDTDPGVTEWEGETYDESVTRAKRIYPHRNDTGGFFCAKLR 299
>gi|55377492|ref|YP_135342.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula marismortui ATCC
43049]
gi|55230217|gb|AAV45636.1| tRNA and rRNA cytosine-C5-methylases [Haloarcula marismortui ATCC
43049]
Length = 318
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 147/290 (50%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
I++ E+P P +R NT+K + L + + DP+ W GL V P GA
Sbjct: 32 FIDACERPLPSAIRVNTIKATVERVRTALADADIAYDPVD-WHD-GLFVLPEDSP-GANW 88
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S +P L PQ ERV D AAPG KTT +AALM++TG + A +
Sbjct: 89 PYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMEDTGEVVATDNNL 148
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R+ +L N R+G T V + DG N K DR L+D PCS G I K+
Sbjct: 149 GRISALRTNTERLGATTVAVTHEDGRNHSLKPFDGEGYDRALVDVPCSCEGTIRKNPDTL 208
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
SL ++ S +QK ++ A+++ ++ GG +VYSTC+ ENEAV+DY L +
Sbjct: 209 EDWSLSHVEGISGVQKGILKRAVEV----TEPGGTVVYSTCTFAPEENEAVLDYVLDEVA 264
Query: 333 VKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V L G + + F PS+ +R YPH ++ GFF AKL+
Sbjct: 265 CEIVDYDLPLNHAPGITDWEDESFDPSVADAKRIYPHHNDTGGFFCAKLE 314
>gi|417231665|ref|ZP_12033063.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0959]
gi|386204664|gb|EII09175.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0959]
Length = 506
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 55 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 113
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 114 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 170
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 171 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 226
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 227 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 282
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 283 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 333
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 334 RLRK---TQAIPALPAP 347
>gi|284161697|ref|YP_003400320.1| RNA methylase [Archaeoglobus profundus DSM 5631]
gi|284011694|gb|ADB57647.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
5631]
Length = 305
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 150/284 (52%), Gaps = 12/284 (4%)
Query: 100 KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGF 159
KP R NTLK D+ L +R L+P+ W K G S +G T E+ G
Sbjct: 31 KPLRPSFRVNTLKASVEDVVSSLSDR-FKLEPIP-WCKEGFF---SDKEVGRTIEHQIGV 85
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSL 219
Q ASS +P + L P+ V+DM A+PGGKTT IA MKN G I AN++K R+ L
Sbjct: 86 IFSQEASSMIPAIVLDPKPNMLVLDMCASPGGKTTQIAQYMKNEGCIVANDVKYDRINIL 145
Query: 220 TANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLED 279
+NL R GVT V DG + +T DRVL+DAPCS G+I K+ SL++
Sbjct: 146 ISNLQRCGVTIARVTMKDGRFFKRF--KDTFDRVLIDAPCSNVGMIRKNYRYLKMWSLKE 203
Query: 280 IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCG 339
+ S LQK+L++A + N G +VYSTC++ ENE V+DY L D KL+
Sbjct: 204 VYSLSRLQKELVMAGYRALKPN----GIMVYSTCTLDPLENEEVVDYLLSNTDAKLLEID 259
Query: 340 LDFGR-QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
L R + F + ++K R +P ++ +GFF+AK+ K
Sbjct: 260 LPVNRTEPITEFEGKVYDEEVKKCLRIHPQDNDTEGFFIAKITK 303
>gi|260901577|ref|ZP_05909972.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus AQ4037]
gi|308108539|gb|EFO46079.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus AQ4037]
Length = 478
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 157/294 (53%), Gaps = 16/294 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK D ++G L P+ W G + +S VP+G
Sbjct: 27 DFISACQRPLRKSIRVNTLKMSVEDFVKRADDKGWTLSPVP-WCDTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALMKN G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V +
Sbjct: 205 EDAMKNWTQASVLEIADTQKDLIESAFHAL----KPGGVLVYSTCTLSTEENQQVCHHLK 260
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ + LD G F + E +P V++ +GFFVA+++K
Sbjct: 261 ETFGDAVEFESLD----GL--FENANAALTEEGFLHIFPQVYDCEGFFVARIRK 308
>gi|390962131|ref|YP_006425965.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. CL1]
gi|390520439|gb|AFL96171.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. CL1]
Length = 311
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 153/294 (52%), Gaps = 17/294 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINR---GVNLDPLSKWSKVGLVVYDSQVPI 149
E E KP +R NTLK DV++ R L+P+ W + G + +
Sbjct: 26 EFWEFLVKPLRQSIRVNTLKAP----LDVVVERLSEEFELEPIP-WVREGFFINVDN--L 78
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
PE+ G Q ASS +P + L P+ E V+DMAAAPG KT IA M+N G I AN
Sbjct: 79 AKVPEHGLGLIFGQEASSMIPPVVLEPKPGELVLDMAAAPGSKTGQIAQYMENRGCIIAN 138
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
+ K SR L ANL++MGV NT V DG + NT DRVLLDAPCS G+I K
Sbjct: 139 DPKISRANVLIANLNKMGVLNTRVTTKDGAYFARF--ENTFDRVLLDAPCSSIGMIRKRL 196
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
L + K +QK+LILAA + K GG +VYSTC+I ENE V+DY L+
Sbjct: 197 RFLEEWRLRGVIKYMNIQKRLILAAYRAL----KPGGTLVYSTCTIDPVENEEVVDYLLR 252
Query: 330 KRDVKLVPCGLDFGRQGFVRFREHR-FHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
K D L P L V E R + L+K R +P+ ++ + FF+AK+ K
Sbjct: 253 KTDAMLEPIKLPVKTSEPVLEWEGRVYSEELKKALRIHPNDNDTEAFFIAKIVK 306
>gi|295095564|emb|CBK84654.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 465
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 161/298 (54%), Gaps = 23/298 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D++ G L P+ W + G + + +P+
Sbjct: 13 DFVAACQRPLRRSIRVNTLKISVGAFLDLVSPYGWQLTPV-PWCEEGFWIERDDEESLPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFADGNQPERVMDVAAAPGSKTTQIAARMNNRGAIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 132 ANEFSASRVKVLHANISRCGIHNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+E + + Q++LI +A + + GG +VYSTC++ ENE V +
Sbjct: 191 DPDALKNWSVESNLEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNRDENEDVCLW- 245
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
LK+R V+ +P F E H +P +++ +GFFVA+L+K
Sbjct: 246 LKQRYADAVEFLPLDTLFDSASHAATPEGFLH--------VFPQIYDCEGFFVARLRK 295
>gi|320156455|ref|YP_004188834.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
MO6-24/O]
gi|319931767|gb|ADV86631.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
MO6-24/O]
Length = 472
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 159/304 (52%), Gaps = 30/304 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I ++P +R NTLK + +G L P+ W + G + +S+VP+G
Sbjct: 27 DFIAYCQQPLRKSIRVNTLKISVDAFLTIAQEKGWTLHPV-PWCETGFWIKADESKVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M G + +Q ASS +PV AL E E V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L + D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-ESFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + S E + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWSQESVLEIAATQKDLIESAFQAL----KPGGVMVYSTCTLSEEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKT------RRFYPHVHNMDGFFVAKLK 381
K FG V F EK +P V++ +GFFVA+++
Sbjct: 260 KHT----------FGDA--VAFESLSSLFDGAEKALTEDGFLHIFPQVYDSEGFFVARIR 307
Query: 382 KMSN 385
K+++
Sbjct: 308 KLAS 311
>gi|296109553|ref|YP_003616502.1| RNA methylase, NOL1/NOP2/sun family [methanocaldococcus infernus
ME]
gi|295434367|gb|ADG13538.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus
ME]
Length = 274
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 165/283 (58%), Gaps = 31/283 (10%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L + L +GV L+ + V +S IGATPEY+ G+YM QS
Sbjct: 15 IRVNTLKISPSALKERLEKKGVKLE--KTFLDYAFRVIESPFSIGATPEYLFGYYMPQSL 72
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P K+RV+DM AAPGGKTT++A LM N G I A E+ R+K+L +N++R
Sbjct: 73 SSMIPPITLNPSPKDRVLDMCAAPGGKTTHLAQLMGNEGTILAVEISKERVKALKSNINR 132
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
M + NTI+ N D + + L + D++LLDAPCSG I KD++ K + +DI+ C
Sbjct: 133 MNILNTIIINKDMRKYKEYLMKKKILFDKILLDAPCSGN--IIKDKNRKVDE--KDIEYC 188
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD----VKLVPCG 339
S QK+L+ +D++ K GG +VYSTCS+ ENE VI++ LK RD +KL P
Sbjct: 189 SLRQKELLNIGLDLL----KPGGELVYSTCSMEEKENEEVIEHVLKSRDDIKLIKLSPIA 244
Query: 340 LDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+F R G ++ T + YP + FF+AK+KK
Sbjct: 245 -NFIRPG-----------KIKGTLKVYPP---YEPFFIAKIKK 272
>gi|27365942|ref|NP_761470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus
CMCP6]
gi|81844637|sp|Q8D9F3.1|RSMF_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|146325711|sp|Q7MKY6.2|RSMF_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|27362091|gb|AAO10997.1| Ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
CMCP6]
Length = 472
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 159/304 (52%), Gaps = 30/304 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I ++P +R NTLK + +G L P+ W + G + +S+VP+G
Sbjct: 27 DFIAYCQQPLRKSIRVNTLKISVDAFLTIAQEKGWTLHPV-PWCETGFWIEADESKVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M G + +Q ASS +PV AL E E V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L + D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-ESFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + S E + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWSQESVLEIAATQKDLIESAFQAL----KPGGVMVYSTCTLSEEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKT------RRFYPHVHNMDGFFVAKLK 381
K FG V F EK +P V++ +GFFVA+++
Sbjct: 260 KHT----------FGDA--VAFESLSSLFDGAEKALTEDGFLHIFPQVYDSEGFFVARIR 307
Query: 382 KMSN 385
K+++
Sbjct: 308 KLAS 311
>gi|419221581|ref|ZP_13764512.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8E]
gi|378067476|gb|EHW29598.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8E]
Length = 423
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLDDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPSP 320
>gi|323492622|ref|ZP_08097766.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio brasiliensis
LMG 20546]
gi|323312997|gb|EGA66117.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio brasiliensis
LMG 20546]
Length = 474
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 163/307 (53%), Gaps = 31/307 (10%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQ 146
+ + + I + ++P +R NTLK + +G L+P+ W + G + +S+
Sbjct: 23 LNMADFIAACQRPLRKSIRVNTLKVTIEEFTQRAQQKGWQLEPVP-WCEEGFWIEADESE 81
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G + E+M+G + +Q ASS +PV AL QE V+DMAAAPG KTT IA+ M N
Sbjct: 82 VPLGNSAEHMSGLFYIQEASSMMPVSALFLDQQQEFTSVLDMAAAPGSKTTQIASKMSNQ 141
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G++ ANE +SR+K L AN+ R GV N + N+DG L D VL+DAPCSG G
Sbjct: 142 GVLVANEFSSSRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLIDAPCSGEG 200
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
+ KD + S E + S QK LI +A + K GG +VYSTC++ + EN+ V
Sbjct: 201 TVRKDADAMKNWSKESVISISDTQKDLIESAFHAL----KPGGVMVYSTCTLSIEENQQV 256
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKT------RRFYPHVHNMDGFF 376
+ LK+ FG V F P+ +K +P V++ +GFF
Sbjct: 257 CHH-LKET----------FGDA--VEFESLATLFPNADKALTEEGFLHIFPQVYDCEGFF 303
Query: 377 VAKLKKM 383
VA+L+K+
Sbjct: 304 VARLRKL 310
>gi|392548176|ref|ZP_10295313.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas
rubra ATCC 29570]
Length = 485
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 171/322 (53%), Gaps = 36/322 (11%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-----DSQVPIGATPEYMAGFY 160
+R NTLK ++ +++P+ W + G + ++ +PIG T +++G
Sbjct: 46 VRVNTLKMSLQEFEHQAAQLNWHIEPIP-WCEQGYWLTRPAEEEANLPIGNTALHLSGCI 104
Query: 161 MLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS 218
+Q ASS LP MALA E V+DMAAAPG KT+ +AALM+N G++ ANE+ +SRLK+
Sbjct: 105 YVQEASSMLPPMALATSLTPGEHVLDMAAAPGSKTSQLAALMENQGILIANELSSSRLKT 164
Query: 219 LTANLHRMGVTNTIVCNYDGNELPKVLG---LNTVDRVLLDAPCSGTGVISKDESVKTSK 275
L A L RMGV N + ++DG +V G + D +LLDAPCSG G + KD +
Sbjct: 165 LAATLKRMGVANCALSHFDG----QVFGDYMYESFDHILLDAPCSGEGTVRKDPDALKNW 220
Query: 276 SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD--V 333
SL Q + +QK LI +A + K GG +VYSTC++ EN+ + D+ LK V
Sbjct: 221 SLASNQDIAEVQKTLIHSAFMAL----KPGGTLVYSTCTLTPVENQQICDHLLKTFSEYV 276
Query: 334 KLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN----SKKT 389
++VP F + H +P +++ +GFF+AK KK + +KT
Sbjct: 277 EIVPLSSLFPDANKAATAQGYLH--------VWPQIYDSEGFFIAKFKKTGSVEHPQQKT 328
Query: 390 SAGP---QPSETVEQQTPESNV 408
G P+ +QQ E+++
Sbjct: 329 KKGHFPFSPTTKKDQQAFETSI 350
>gi|417319664|ref|ZP_12106213.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio
parahaemolyticus 10329]
gi|328473635|gb|EGF44470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio
parahaemolyticus 10329]
Length = 478
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 157/294 (53%), Gaps = 16/294 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK D ++G L P+ W G + +S VP+G
Sbjct: 27 DFISACQRPLRKSIRVNTLKMSVEDFIKRAEDKGWTLSPVP-WCDTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALMKN G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V +
Sbjct: 205 EDAMKNWTQASVLEIADTQKDLIESAFHAL----KPGGVLVYSTCTLSTEENQQVCHHLK 260
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ + LD G F + E +P V++ +GFFVA+++K
Sbjct: 261 ETFGDAVEFESLD----GL--FENANAALTEEGFLHIFPQVYDCEGFFVARIRK 308
>gi|90410339|ref|ZP_01218355.1| putative sun/nucleolar protein family protein [Photobacterium
profundum 3TCK]
gi|90328580|gb|EAS44864.1| putative sun/nucleolar protein family protein [Photobacterium
profundum 3TCK]
Length = 476
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 159/301 (52%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I S P +R NTLK D + ++ L P+ W G + + V +
Sbjct: 27 EFIASCRTPLRRSIRVNTLKISVEDFLIRVSDKDWTLTPVP-WCDTGFWIEREDEKSVSL 85
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G T E+MAG + +Q ASS +PV AL + V+DMAAAPG KTT IA M+N G +
Sbjct: 86 GNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMAAAPGSKTTQIACAMQNRGALV 145
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE+ ASR+K L ANL R GV N + ++DG + D +LLDAPCSG G I K
Sbjct: 146 ANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGG-WAPESFDTILLDAPCSGEGAIRK 204
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D+ + SL I+ + +Q+ LI++A + K+GG +VYSTC++ ++EN+ V +
Sbjct: 205 DDDAMANWSLSSIEDIAAIQRNLIISAFQAL----KTGGMMVYSTCTLNLSENQHVCHF- 259
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ P G D E F YP + + +GFFVA+++K +
Sbjct: 260 LKETFGDAVEFEPLG-DLFEGAEKSLTEEGF-------LHVYPQIFDSEGFFVARIRKHA 311
Query: 385 N 385
+
Sbjct: 312 S 312
>gi|432553792|ref|ZP_19790519.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE47]
gi|431085092|gb|ELD91215.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE47]
Length = 481
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLK D + G L P+ W + G + DS+ +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R ++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCSISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|365107550|ref|ZP_09335877.1| ribosomal RNA small subunit methyltransferase F [Citrobacter
freundii 4_7_47CFAA]
gi|363641249|gb|EHL80649.1| ribosomal RNA small subunit methyltransferase F [Citrobacter
freundii 4_7_47CFAA]
Length = 473
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 163/299 (54%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E + + ++P +R NTLK D + +L P+ W G + + VP+
Sbjct: 24 EFLAACQRPLRRSIRVNTLKISVADFLALTAPYNWSLTPV-PWCAEGFWIERDDEESVPL 82
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 83 GSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNRGAIL 142
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L + D +LLDAPCSG GV+ K
Sbjct: 143 ANEFSASRVKVLHANVSRCGIANVALTHFDGRVFGAALP-ESFDAILLDAPCSGEGVVRK 201
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+E + + Q++L+ +A + + GG +VYSTC++ ENE ++ +
Sbjct: 202 DPDALKNWSVESNLEIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRDENENIMQWL 257
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ V+ +P G F + E P E +P +++ +GFFVA+L+K +
Sbjct: 258 IETYPDAVEFLPLGDLFPQA------ERALTP--EGFLHVFPQIYDCEGFFVARLRKTA 308
>gi|432392241|ref|ZP_19635081.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE21]
gi|430920058|gb|ELC40978.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE21]
Length = 481
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 162/301 (53%), Gaps = 29/301 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAFYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV
Sbjct: 146 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 204
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 205 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVC 260
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F + H +P +++ +GFFVA+L+
Sbjct: 261 RW-LKETYPDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVARLR 311
Query: 382 K 382
K
Sbjct: 312 K 312
>gi|339999675|ref|YP_004730558.1| rRNA (cytosine-C(5)-)-methyltransferase [Salmonella bongori NCTC
12419]
gi|339513036|emb|CCC30780.1| rRNA (cytosine-C(5)-)-methyltransferase [Salmonella bongori NCTC
12419]
Length = 513
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 166/315 (52%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D + G +L P+ W K G + ++ +P+
Sbjct: 62 DFIAACQRPLRRSIRINTLKISVTDFLTLTAPYGWSLTPI-PWCKEGFWIERDDEATLPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDTHPLRVMDMAAAPGSKTTQIAARMGNHGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L ANL R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKVLHANLSRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNREENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P F E H +P +++ +GFFVA+L+K
Sbjct: 295 LKETYADAVEFLPLNDLFPDASRALTPEGFLH--------VFPQIYDCEGFFVARLRK-- 344
Query: 385 NSKKTSAGPQPSETV 399
+ A P P+ V
Sbjct: 345 -TLSLPARPAPAYNV 358
>gi|448241893|ref|YP_007405946.1| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445212257|gb|AGE17927.1| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
Length = 503
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 168/319 (52%), Gaps = 27/319 (8%)
Query: 88 PVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-- 143
P EL + I + ++P LR NTLK D ++ + L+P+ W G +
Sbjct: 47 PAELAMEDFIAACQRPLRRSLRVNTLKISVADFLVLVQDYDWRLEPI-PWCAEGFWIERD 105
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMK 201
D ++ +G+ E+++G + +Q ASS LPV AL + RV+D+AAAPG KTT IAALM
Sbjct: 106 DEELRLGSAAEHLSGLFYIQEASSMLPVSALFAGDAAPNRVLDVAAAPGSKTTQIAALMG 165
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N G I ANE ASR+K L AN+ R GV NT + ++DG L + D +LLDAPCSG
Sbjct: 166 NQGGIVANEYSASRVKVLHANISRCGVKNTALTHFDGRVFGAALP-ESFDAILLDAPCSG 224
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD ++ S E + + + Q++LI +A + GG +VYSTC++ EN+
Sbjct: 225 EGVVRKDPDAMSNWSPESVTEIAATQRELIDSAFHAL----APGGVMVYSTCTLNAQENQ 280
Query: 322 AVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
V+ + L V + P G F E H +P +++ +GFFVA+
Sbjct: 281 QVVRWLLDTYGDAVSVEPLGELFPGADKALTAEGFLH--------VFPQIYDSEGFFVAR 332
Query: 380 LKKMSNSKKTSAGPQPSET 398
L+ K+ + P P T
Sbjct: 333 LR-----KQHAVAPLPKPT 346
>gi|260868356|ref|YP_003234758.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|257764712|dbj|BAI36207.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
Length = 481
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLDDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|407072061|ref|ZP_11102899.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cyclitrophicus
ZF14]
Length = 473
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 165/319 (51%), Gaps = 26/319 (8%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + I S +KP +R NTLK D ++G L+P+ W
Sbjct: 10 EFLTHIKGIMPSHLNMASFIASCQKPLRKSIRVNTLKISVEDFLVRAKDKGWELEPVP-W 68
Query: 136 SKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGG 191
+ G + +S+ P+G T E+M+G + +Q ASS +P AL E+ + V+D AAAPG
Sbjct: 69 CETGFWITANESETPLGNTAEHMSGLFYIQEASSMMPPSALFQSEEDYQAVLDTAAAPGS 128
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT IAALM N G++ ANE ASR+K L AN+ R GV NT + N+DG L D
Sbjct: 129 KTTQIAALMNNRGVLVANEYAASRVKVLHANIERCGVRNTALSNFDGRVFGGWLP-EQFD 187
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
VLLDAPCSG G I KD + + + + + QK LI +A + N G +VYS
Sbjct: 188 AVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIANTQKDLIESAFHALKPN----GVLVYS 243
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR-----RFY 366
TC++ EN+ V + LK+ FG E F + T +
Sbjct: 244 TCTLSTEENQQVCHH-LKET----------FGDAVEFESLESLFDNAKATTTEEGFLHIF 292
Query: 367 PHVHNMDGFFVAKLKKMSN 385
P V++ +GFFVA+++K+++
Sbjct: 293 PQVYDSEGFFVARIRKLAS 311
>gi|270261528|ref|ZP_06189801.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
4Rx13]
gi|270045012|gb|EFA18103.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
4Rx13]
Length = 480
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 25/317 (7%)
Query: 88 PVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-- 143
P EL + I + ++P LR NTLK D ++ + L+P+ W G +
Sbjct: 22 PAELSMDDFIAACQRPLRRSLRVNTLKISVADFQALVQDYDWRLEPI-PWCAEGFWIERE 80
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMAL-APQEK-ERVIDMAAAPGGKTTYIAALMK 201
D ++ +G+ E+++G + +Q ASS LPV AL A +EK RV+D+AAAPG KTT IAALM
Sbjct: 81 DEELRLGSAAEHLSGLFYIQEASSMLPVSALFADREKPRRVLDVAAAPGSKTTQIAALMN 140
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N G I ANE ASR+K L AN+ R GV N + ++DG L + D +LLDAPCSG
Sbjct: 141 NQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRVFGAALP-ESFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD ++ S E + + Q++LI +A + GG +VYSTC++ EN+
Sbjct: 200 EGVVRKDPDAMSNWSPESVTAIAATQRELIDSAFHAL----APGGVMVYSTCTLNAQENQ 255
Query: 322 AVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
+++ L V + P G F E H +P +++ +GFFVA+
Sbjct: 256 QIVNGLLAAYGDAVSIEPLGELFPGAEKALTAEGFLH--------VFPQIYDSEGFFVAR 307
Query: 380 LKKMSNSKKTSAGPQPS 396
L+K + + P+PS
Sbjct: 308 LRK---NHSVAPLPKPS 321
>gi|441505243|ref|ZP_20987231.1| Ribosomal RNA small subunit methyltransferase F [Photobacterium sp.
AK15]
gi|441427098|gb|ELR64572.1| Ribosomal RNA small subunit methyltransferase F [Photobacterium sp.
AK15]
Length = 476
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 160/303 (52%), Gaps = 27/303 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + P +R NTLK D + ++G L P+ W + G + + V +
Sbjct: 27 EFIACCKTPLRRSIRVNTLKISVEDFLTRVADKGWTLTPVP-WCETGFWIEREDEDSVSL 85
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G T E+MAG + +Q ASS +PV AL + V+DMA+APG KTT IA M+N G +
Sbjct: 86 GNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMASAPGSKTTQIACAMENRGALV 145
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE+ ASR+K L +NL R GV N + ++DG + D +LLDAPCSG G I K
Sbjct: 146 ANELAASRIKVLHSNLQRCGVYNAALTHFDGCVFGG-WAPESFDSILLDAPCSGEGAIRK 204
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D+ + SLE +++ + +Q+ LI++A + K GG +VYSTC++ ++EN+ +
Sbjct: 205 DDDAMENWSLESVEEIAAVQRDLIVSAFQAL----KPGGVMVYSTCTLNLSENQHACHF- 259
Query: 328 LKKR---DVKLVPCG--LDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
LK+ V P D +Q E YP + + +GFFVA+++K
Sbjct: 260 LKETFGDAVAFEPLDNLFDGAKQALTE----------EGFLHVYPQIFDSEGFFVARIRK 309
Query: 383 MSN 385
+ +
Sbjct: 310 LES 312
>gi|386824836|ref|ZP_10111965.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia plymuthica
PRI-2C]
gi|386378281|gb|EIJ19089.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia plymuthica
PRI-2C]
Length = 478
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 25/317 (7%)
Query: 88 PVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-- 143
P EL + I + ++P LR NTLK D ++ L+P+ W G +
Sbjct: 22 PAELSMDDFIAACQRPLRRSLRVNTLKISVADFQALVQGYDWRLEPV-PWCAEGFWIERG 80
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMAL-APQEK-ERVIDMAAAPGGKTTYIAALMK 201
D ++ +G+ E+++G + +Q ASS LPV AL A +EK RV+D+AAAPG KTT IAALM
Sbjct: 81 DEELRLGSAAEHLSGLFYIQEASSMLPVSALFADREKPRRVLDVAAAPGSKTTQIAALMN 140
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N G I ANE ASR+K L AN+ R GV N + ++DG L + D +LLDAPCSG
Sbjct: 141 NQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRVFGAALP-ESFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD ++ S E + + Q++LI +A + GG +VYSTC++ EN+
Sbjct: 200 EGVVRKDPDAMSNWSPESVTAIAATQRELIDSAFHAL----APGGVMVYSTCTLNAQENQ 255
Query: 322 AVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
+++ L V + P G F E H +P +++ +GFFVA+
Sbjct: 256 QIVNSLLAAYGDAVSIEPLGELFPGAEKALTAEGFLH--------VFPQIYDSEGFFVAR 307
Query: 380 LKKMSNSKKTSAGPQPS 396
L+K + + P+PS
Sbjct: 308 LRK---NHSVTPLPKPS 321
>gi|415817991|ref|ZP_11507907.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1180]
gi|417195325|ref|ZP_12015739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0522]
gi|417591973|ref|ZP_12242672.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2534-86]
gi|419197220|ref|ZP_13740613.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8A]
gi|419887834|ref|ZP_14408386.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9570]
gi|419897168|ref|ZP_14416761.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9574]
gi|420091432|ref|ZP_14603179.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9602]
gi|420093785|ref|ZP_14605420.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9634]
gi|424770347|ref|ZP_18197552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CFSAN001632]
gi|323180615|gb|EFZ66160.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1180]
gi|345340633|gb|EGW73051.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2534-86]
gi|378048532|gb|EHW10886.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8A]
gi|386189367|gb|EIH78133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0522]
gi|388355746|gb|EIL20568.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9574]
gi|388361751|gb|EIL25828.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9570]
gi|394383017|gb|EJE60625.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9602]
gi|394398298|gb|EJE74485.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9634]
gi|421942545|gb|EKT99872.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CFSAN001632]
Length = 479
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLDDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|218548605|ref|YP_002382396.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia
fergusonii ATCC 35469]
gi|226725339|sp|B7LPL0.1|RSMF_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218356146|emb|CAQ88763.1| putative RNA AdoMet-dependent methyltransferase [Escherichia
fergusonii ATCC 35469]
Length = 479
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 165/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAARMNNEGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+K
Sbjct: 261 LKETYPDAVEFLPLGDLFPGADKALTEEGFLH--------VFPQIYDCEGFFVARLRK-- 310
Query: 385 NSKKTSAGPQP 395
++ A P P
Sbjct: 311 -TQAIPALPAP 320
>gi|343499062|ref|ZP_08737060.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio tubiashii ATCC
19109]
gi|418479757|ref|ZP_13048830.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342823468|gb|EGU58094.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio tubiashii ATCC
19109]
gi|384572685|gb|EIF03198.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 473
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 160/298 (53%), Gaps = 18/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ + + ++P +R NTLK + + +G L+ + W G + +S+VP+G
Sbjct: 27 DFVAACQRPLRKSIRVNTLKITVDEFLERAKGKGWQLEAVP-WCHEGFWIEADESEVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL Q E E V+DMAAAPG KTT IAA M N+G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFQQSNEFESVLDMAAAPGSKTTQIAACMGNSGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VL+DAPCSG G + KD
Sbjct: 146 NEFSASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLIDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
+ + E + S QK LI +A + K GG +VYSTC++ + EN+ V +
Sbjct: 205 ADAMKNWTKESVISISDTQKDLIESAFHAL----KPGGVMVYSTCTLSIEENQQVCHHLK 260
Query: 329 KKRDVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ D ++ L D E F +P V++ +GFFVA+++K+ +
Sbjct: 261 EVFDEEVSFESLSDLFPDADKALTEEGF-------LHIFPQVYDCEGFFVARIRKLGS 311
>gi|421847842|ref|ZP_16280973.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter freundii
ATCC 8090 = MTCC 1658]
gi|411770807|gb|EKS54550.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter freundii
ATCC 8090 = MTCC 1658]
Length = 462
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + +L P+ W G + + VP+
Sbjct: 13 DFLAACQRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPV-PWCAEGFWIERDEEESVPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNRGAIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L + D +LLDAPCSG GV+ K
Sbjct: 132 ANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALP-ESFDAILLDAPCSGEGVVRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q++L+ +A + + GG +VYSTC++ ENE V+ +
Sbjct: 191 DPDALKNWSPESNLEIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRDENENVMQWL 246
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ V+ +P G F + V E H +P +++ +GFFVA+L+K +
Sbjct: 247 IETYPDAVEFLPLGDLFPQAERVLTPEGFLH--------VFPQIYDCEGFFVARLRKTA 297
>gi|417213137|ref|ZP_12022499.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
JB1-95]
gi|419203416|ref|ZP_13746615.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8B]
gi|378051398|gb|EHW13715.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8B]
gi|386194525|gb|EIH88776.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
JB1-95]
Length = 479
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLDDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|375131011|ref|YP_004993111.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
NCTC 11218]
gi|315180185|gb|ADT87099.1| Ribosomal RNA small subunit methyltransferase F (rRNA
(cytosine-C(5)-)-methyltransferase rsmF) (16S rRNA
m5C1407 methyltransferase) [Vibrio furnissii NCTC 11218]
Length = 474
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 163/316 (51%), Gaps = 20/316 (6%)
Query: 76 EFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E + + E+ P + + + I + ++P +R NTLK +G L+ +
Sbjct: 9 EAFLSTMAEILPSSLNMDDFIAACQRPLRKSIRVNTLKVSVEAFLSRAKEKGWMLEAV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER---VIDMAAAP 189
W G + +S VP+G T E+MAG + +Q ASS +PV AL ER V+DMAAAP
Sbjct: 68 WCDTGFWIDADESDVPLGNTAEHMAGLFYIQEASSMMPVSALFMDASERFDAVLDMAAAP 127
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT IAALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 GSKTTQIAALMNNAGILVANEFSASRVKVLHANIERCGIRNTALSNFDGRVFGGWLP-EQ 186
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D VL+DAPCSG G I KD + S + + QK LI +A + K GG +V
Sbjct: 187 FDAVLIDAPCSGEGTIRKDPDAMKNWSKASVLSIADTQKDLIESAFQAL----KVGGVLV 242
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT-RRFYPH 368
YSTC++ EN+ V + LK V F R EH E+ +P
Sbjct: 243 YSTCTLSREENQQVC-WHLKNTYGDAV----SFER--LDNLFEHADQAITEEGFLHIFPQ 295
Query: 369 VHNMDGFFVAKLKKMS 384
V++ +GFFVA+++K +
Sbjct: 296 VYDCEGFFVARIRKHA 311
>gi|288932862|ref|YP_003436922.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
gi|288895110|gb|ADC66647.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
Length = 306
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 157/292 (53%), Gaps = 13/292 (4%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E E KP R NTLK + + + L + L+ + W K G VY I T
Sbjct: 25 EFYEFMAKPIRQSFRVNTLKIDVKSVVERL-SEEFELERVP-WCKEGFFVYGEG--ITKT 80
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
PE+ G +Q ASS +P + + +E V+DMAAAPG KTT I+ M NTG + AN++K
Sbjct: 81 PEFALGLIFMQEASSMIPPVVMDLKENLFVLDMAAAPGAKTTQISQYMNNTGCVIANDVK 140
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD-ESV 271
SRL L +N+ + G N +V DG + +T DRVLLDAPCS G+I K+ + +
Sbjct: 141 YSRLNILISNVQKYGCINVVVTEKDGRYFGRF--RDTFDRVLLDAPCSNVGMIRKNYKYL 198
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
K + +E ++ S LQK LILAA + K G +VYSTC++ ENE VIDY L
Sbjct: 199 KLWRQME-VEALSRLQKSLILAAYKAL----KPKGVLVYSTCTLDPEENEEVIDYLLYNT 253
Query: 332 DVKLVPCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
D KL L + + F R+ ++K R +P ++ +GFFVAK+ K
Sbjct: 254 DAKLEKIKLPVKSTEPILEFNGKRYSEEVKKCLRIHPQDNDTEGFFVAKVVK 305
>gi|448630650|ref|ZP_21673230.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula vallismortis ATCC
29715]
gi|445755683|gb|EMA07066.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula vallismortis ATCC
29715]
Length = 303
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 147/290 (50%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++ E+P P +R N++K + L + DP+ W GL V P GA
Sbjct: 17 FTDACERPLPSAVRVNSIKATVERVRTALTEADIAYDPV-DWHD-GLFVLPEDSP-GANW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S +P L PQ ERV D AAPG KTT +AALM +TG + A +
Sbjct: 74 PYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMDDTGEVVATDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R+ +L N R+G T V + DG N K G DR L+D PCS G I K+
Sbjct: 134 GRISALRTNTERLGATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTL 193
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
+L ++ S +QK ++ A+++ ++ GG +VYSTC+ ENEAV+DY L + D
Sbjct: 194 EDWTLSHVEGISGVQKGILKRAVEV----TEPGGTVVYSTCTFAPEENEAVLDYVLGEVD 249
Query: 333 VKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V L G +++ + PS+ +R YPH ++ GFF AKL+
Sbjct: 250 CEIVEYDLPLDHAPGITEWQDETYDPSVTNAKRIYPHHNDTGGFFCAKLE 299
>gi|257096810|sp|A9MNH4.2|RSMF_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 166/315 (52%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D + G L P+ W G + + +P+
Sbjct: 28 EFIAACQRPLRRSIRINTLKISVADFLALTAPYGWLLTPI-PWCDEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNHGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L ANL R GV NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKILHANLCRCGVANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLESAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P F E H +P +++ +GFFVA+L+K+S
Sbjct: 261 LKETYTDAVEFLPLNDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKIS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P+ V
Sbjct: 313 S---LPALPAPTYKV 324
>gi|37679825|ref|NP_934434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus
YJ016]
gi|37198570|dbj|BAC94405.1| sun/nucleolar protein family protein [Vibrio vulnificus YJ016]
Length = 501
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 159/304 (52%), Gaps = 30/304 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I ++P +R NTLK + +G L P+ W + G + +S+VP+G
Sbjct: 56 DFIAYCQQPLRKSIRVNTLKISVDAFLTIAQEKGWTLHPV-PWCETGFWIEADESKVPLG 114
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M G + +Q ASS +PV AL E E V+D AAAPG KTT IAALM N G++ A
Sbjct: 115 NTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVA 174
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L + D VLLDAPCSG G + KD
Sbjct: 175 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-ESFDAVLLDAPCSGEGTVRKD 233
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + S E + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 234 EDAMKNWSQESVLEIAATQKDLIESAFQAL----KPGGVMVYSTCTLSEEENQQVCHH-L 288
Query: 329 KKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKT------RRFYPHVHNMDGFFVAKLK 381
K FG V F EK +P V++ +GFFVA+++
Sbjct: 289 KHT----------FGDA--VAFESLSSLFDGAEKALTEDGFLHIFPQVYDSEGFFVARIR 336
Query: 382 KMSN 385
K+++
Sbjct: 337 KLAS 340
>gi|402840535|ref|ZP_10888999.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
OBRC7]
gi|402285752|gb|EJU34233.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
OBRC7]
Length = 491
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 168/316 (53%), Gaps = 21/316 (6%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + I + ++P +R NTLK D ++ L P+ W
Sbjct: 25 EFLAQMRAAMPTHLSFDDFIAACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PW 83
Query: 136 SKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPG 190
+ G + + +P+G+T E+++G + +Q ASS LPV AL Q +RV+D+AAAPG
Sbjct: 84 CEEGFWIEREDEDDLPLGSTAEHLSGLFYIQEASSMLPVAALFADGQMPKRVMDVAAAPG 143
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAA M N G I ANE ASR+K L AN+ R G++N + ++DG L
Sbjct: 144 SKTTQIAARMGNEGGILANEYSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ECF 202
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D +LLDAPCSG GV+ KD + S E + + Q++LI +A + + GG +VY
Sbjct: 203 DAILLDAPCSGEGVVRKDPDALKNWSPESNAEIAVTQRELIDSAFHAL----RPGGTLVY 258
Query: 311 STCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
STC++ ENE V++ L + + V+++P G F + E H +P
Sbjct: 259 STCTLNRQENEEVVNGLLARYPQAVEVLPLGSLFPQASEALTEEGFLH--------VFPQ 310
Query: 369 VHNMDGFFVAKLKKMS 384
+ + +GFFVA+L+K +
Sbjct: 311 IFDCEGFFVARLRKTA 326
>gi|395232341|ref|ZP_10410592.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp. Ag1]
gi|394733327|gb|EJF32955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp. Ag1]
Length = 482
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 169/322 (52%), Gaps = 22/322 (6%)
Query: 78 LIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS 136
+ A+ + P + +E IE ++P LR NTLK D ++ L P+ W
Sbjct: 13 FLDAIRDALPAGQTLESFIEYCQQPLRRSLRVNTLKISVADFLTLVAPYHWRLTPV-PWC 71
Query: 137 KVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGG 191
+ G + + +P+G+T E+++G + + ASS LPV AL + +RV+D+AAAPG
Sbjct: 72 EEGFWIEREDEETLPLGSTAEHLSGLFYIHEASSMLPVAALFADGNQPQRVMDVAAAPGS 131
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT IAA M NTG I ANE ASR+K L AN+ R G++N + ++DG L + D
Sbjct: 132 KTTQIAARMNNTGAILANEYSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ESFD 190
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
+LLDAPCSG GV+ KD + S E + + Q++LI +A + + GG +VYS
Sbjct: 191 AILLDAPCSGEGVVRKDPDALRNWSPESTAEIAGTQRELIESAFHAL----RPGGTLVYS 246
Query: 312 TCSIMVTENEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
TC++ EN+ V + L V++ P F E H +P +
Sbjct: 247 TCTLNRQENQDVCQWLLDTWPDAVEIAPLDELFPEAARALTPEGFLH--------VFPQI 298
Query: 370 HNMDGFFVAKLKKMSNSKKTSA 391
++ +GFFVA+L+K ++ + A
Sbjct: 299 YDCEGFFVARLRKTASIEPLPA 320
>gi|343506087|ref|ZP_08743602.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio ichthyoenteri
ATCC 700023]
gi|342804191|gb|EGU39521.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio ichthyoenteri
ATCC 700023]
Length = 459
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 160/304 (52%), Gaps = 28/304 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ + + ++P +R NTLK + ++G L P+ W G + +S VP+G
Sbjct: 13 DFVAACQRPLRKSVRVNTLKLSVDEFKQRAASKGWQLFPVP-WCHEGFWIEADESLVPLG 71
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M G + +Q ASS +PV AL + V+DMAAAPG KTT +AA MKN G++ A
Sbjct: 72 NTAEHMTGLFYIQEASSMMPVSALFKGDSNYDAVLDMAAAPGSKTTQVAACMKNDGVLIA 131
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV NT + NYDG L D VLLDAPCSG G + KD
Sbjct: 132 NEFSASRVKVLHANIERCGVRNTALSNYDGRVFGGWLP-EHFDAVLLDAPCSGEGTVRKD 190
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
+ + + + QK LI +A + K GG +VYSTC++ V EN+ V + L
Sbjct: 191 ADAMKNWNKASVISIAETQKDLIESAFHAL----KPGGVMVYSTCTLSVEENQQVCHH-L 245
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFFVAKLKK 382
K+ LV F ++ P EK +P V++ +GFFVA+++K
Sbjct: 246 KETFGDLV---------AFDSLKD--LFPEAEKALTDEGFLHIFPQVYDCEGFFVARIRK 294
Query: 383 MSNS 386
+ ++
Sbjct: 295 LGSA 298
>gi|448512219|ref|ZP_21616333.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 9100]
gi|448520842|ref|ZP_21618175.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 10118]
gi|445694539|gb|ELZ46664.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 9100]
gi|445702978|gb|ELZ54917.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 10118]
Length = 309
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 154/297 (51%), Gaps = 13/297 (4%)
Query: 91 LMELIESF----EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
L++ +++F ++P P +RTN + + + GV +P+ W GL
Sbjct: 10 LVDDVDAFRAACDRPLPSVVRTNEIAATPARVREAFDEAGVAYEPVD-WHD-GLFRLPDG 67
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
P G P Y+ G+ Q S LP +AL P+ ERV D AAPG KTT IA M + G +
Sbjct: 68 NPGGNWP-YVHGWTHGQEEVSVLPTLALDPRPGERVWDACAAPGSKTTQIADAMDDEGTV 126
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVI 265
AN+ RL +L N R+G+TN IV N D N K LG + DR L+DAPCS G
Sbjct: 127 VANDNNLGRLSALRHNAERLGITNAIVTNQDARNFSTKPLGFDEFDRALVDAPCSCEGTC 186
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
K+ V +L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D
Sbjct: 187 RKNPDVLDQWTLDHVHAVAGIQKGVLARAVQA----TRPGGVVVYSTCTFAPEENEAVLD 242
Query: 326 YALKKRDVKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ L + D +LV L G ++ + S+ + +R YPH ++ GFF AKL+
Sbjct: 243 HVLDEEDCELVEFDLPLDTDPGVTQWDGETYDESVTRAKRVYPHRNDTGGFFCAKLR 299
>gi|390434825|ref|ZP_10223363.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pantoea agglomerans
IG1]
Length = 477
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 160/305 (52%), Gaps = 28/305 (9%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
L + I ++P +R NTLK D L P+ W + G + D +P
Sbjct: 28 LAQFIAYSQQPLRRSIRVNTLKISVADFLSQTAGYDWKLTPV-PWCEEGFWISREDESLP 86
Query: 149 IGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+G+ E+++G + +Q ASS LPV AL A E V+DMAAAPG KTT IAA M N G+I
Sbjct: 87 LGSVAEHLSGLFYIQEASSMLPVTALFDAQPEVSAVMDMAAAPGSKTTQIAARMGNQGVI 146
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SR+K L AN+ R GV+N+ + ++D G LP+ D +LLDAPCSG
Sbjct: 147 LANEFSSSRVKVLHANISRCGVSNSALTHFDARVFGPALPE-----QFDAILLDAPCSGE 201
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
GVI KD + SL + + Q+ L+ +A + K GG +VYSTC++ EN+
Sbjct: 202 GVIRKDADALKNWSLASTHEIASTQRDLLDSAFHAL----KPGGTLVYSTCTLNQIENQQ 257
Query: 323 VIDYALKKRDVKLVPCGLD--FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
VI + L++ + LD F G E H +P + + +GFFVA+L
Sbjct: 258 VIAWLLERYPDAVEVVALDGLFEGAGQAATPEGYLH--------VFPQMFDSEGFFVARL 309
Query: 381 KKMSN 385
+K ++
Sbjct: 310 RKTAS 314
>gi|197248818|ref|YP_002146175.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|440764786|ref|ZP_20943810.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|440768205|ref|ZP_20947178.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
gi|440774654|ref|ZP_20953541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|226725341|sp|B5F3P3.1|RSMF_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197212521|gb|ACH49918.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|436412877|gb|ELP10815.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|436415469|gb|ELP13388.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|436418085|gb|ELP15971.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
Length = 479
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 162/301 (53%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P F E H +P +++ +GFFVA+L+K+S
Sbjct: 261 LKETYADAVEFLPLDDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKIS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>gi|254508779|ref|ZP_05120891.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C
[Vibrio parahaemolyticus 16]
gi|219548299|gb|EED25312.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C
[Vibrio parahaemolyticus 16]
Length = 474
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 162/306 (52%), Gaps = 29/306 (9%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
L E + + ++P +R NTLKT D +G L P+ W G + +S VP
Sbjct: 25 LEEFVAACQRPLRKSIRVNTLKTTVADFLTRANEKGWQLYPVP-WCDEGFWIEADESVVP 83
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKE---RVIDMAAAPGGKTTYIAALMKNTGL 205
+G T E+M+G + +Q ASS +PV AL + + V+DMAAAPG KTT IAA M N G+
Sbjct: 84 LGNTAEHMSGLFYIQEASSMMPVSALFKSDTDVYDTVLDMAAAPGSKTTQIAAKMANEGV 143
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
+ ANE +SR+K L AN+ R GV N + NYDG L + VL+DAPCSG G +
Sbjct: 144 LVANEYSSSRVKVLHANIERCGVRNAALSNYDGRVFGGWLP-EQFEAVLIDAPCSGEGTV 202
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD + S + S QK LI +A + K GG++VYSTC++ V EN+ V
Sbjct: 203 RKDADAMKNWSKASVIDISNTQKDLIESAFHAL----KVGGHLVYSTCTLSVEENQQVCH 258
Query: 326 YALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFFVAK 379
+ LK+ FG E F P+ +K+ +P ++ +GFFVA+
Sbjct: 259 H-LKET----------FGEAVEFDSLEDLF-PNADKSLTPEGFLHIFPQTYDCEGFFVAR 306
Query: 380 LKKMSN 385
L+K+S+
Sbjct: 307 LRKVSS 312
>gi|161503027|ref|YP_001570139.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160864374|gb|ABX20997.1| hypothetical protein SARI_01091 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 513
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 166/315 (52%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D + G L P+ W G + + +P+
Sbjct: 62 EFIAACQRPLRRSIRINTLKISVADFLALTAPYGWLLTPI-PWCDEGFWIERDDEDALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNHGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L ANL R GV NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEFSASRVKILHANLCRCGVANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 240 DPDALKNWSPESNLDIAATQRELLESAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 294
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P F E H +P +++ +GFFVA+L+K+S
Sbjct: 295 LKETYTDAVEFLPLNDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKIS 346
Query: 385 NSKKTSAGPQPSETV 399
+ A P P+ V
Sbjct: 347 S---LPALPAPTYKV 358
>gi|366157844|ref|ZP_09457706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
TW09308]
Length = 479
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 165/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W K G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPV-PWCKEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAASMNNEGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q++LI +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNRDENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+K
Sbjct: 261 LKETYPDAVEFLPLGDLFPDAKKALTEEGFLH--------VFPQIYDCEGFFVARLRK-- 310
Query: 385 NSKKTSAGPQP 395
++ A P P
Sbjct: 311 -TQAIPALPAP 320
>gi|433657747|ref|YP_007275126.1| Ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus BB22OP]
gi|432508435|gb|AGB09952.1| Ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus BB22OP]
Length = 478
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 157/294 (53%), Gaps = 16/294 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK D ++G L P+ W G + +S VP+G
Sbjct: 27 DFISACQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTLSPVP-WCDTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALMKN G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + Q+ LI +A + K GG +VYSTC++ EN+ V +
Sbjct: 205 EDAMKNWTQASVLEIADTQQDLIESAFHAL----KPGGVLVYSTCTLSTEENQQVCHHLK 260
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ + LD G F + E +P V++ +GFFVA+++K
Sbjct: 261 ETFGDAVEFESLD----GL--FENANAALTEEGFLHIFPQVYDCEGFFVARIRK 308
>gi|260768468|ref|ZP_05877402.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
CIP 102972]
gi|260616498|gb|EEX41683.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
CIP 102972]
Length = 474
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 163/316 (51%), Gaps = 20/316 (6%)
Query: 76 EFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E + + E+ P + + + I + ++P +R NTLK +G L+ +
Sbjct: 9 EAFLSTMAEILPSSLNMDDFIAACQRPLRKSIRVNTLKISVEAFLSRAKEKGWMLEAV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER---VIDMAAAP 189
W G + +S VP+G T E+MAG + +Q ASS +PV AL ER V+DMAAAP
Sbjct: 68 WCDTGFWIDADESDVPLGNTAEHMAGLFYIQEASSMMPVSALFMDASERFDAVLDMAAAP 127
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT IAALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 GSKTTQIAALMNNAGILVANEFSASRVKVLHANIERCGIRNTALSNFDGRVFGGWLP-EQ 186
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D VL+DAPCSG G I KD + S + + QK LI +A + K GG +V
Sbjct: 187 FDAVLIDAPCSGEGTIRKDPDAMKNWSKASVLSIADTQKDLIESAFQAL----KVGGVLV 242
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT-RRFYPH 368
YSTC++ EN+ V + LK V F R EH E+ +P
Sbjct: 243 YSTCTLSREENQQVC-WHLKNTYGDAV----SFER--LDNLFEHADQAITEEGFLHIFPQ 295
Query: 369 VHNMDGFFVAKLKKMS 384
V++ +GFFVA+++K +
Sbjct: 296 VYDCEGFFVARIRKHA 311
>gi|291085245|ref|ZP_06352509.2| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Citrobacter youngae ATCC 29220]
gi|291072453|gb|EFE10562.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Citrobacter youngae ATCC 29220]
Length = 462
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + +L P+ W G + + +P+
Sbjct: 13 DFLAACQRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPV-PWCAEGFWIERDDEESLPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL ERV+D+AAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFADGNTPERVMDVAAAPGSKTTQIAARMNNHGAIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L T D VLLDAPCSG GVI K
Sbjct: 132 ANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALP-ETFDAVLLDAPCSGEGVIRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+E + Q+ L+ +A + + GG +VYSTC++ ENE ++ +
Sbjct: 191 DPDALKNWSVESNLDIAATQRDLLDSAFHAL----RPGGILVYSTCTLNRDENENIMQWL 246
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ V+ +P G F + E P E +P +++ +GFFVA+L+K +
Sbjct: 247 IETYPDAVEFLPLGDLFPQA------ERALTP--EGFLHVFPQIYDCEGFFVARLRKTA 297
>gi|344211568|ref|YP_004795888.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula hispanica ATCC
33960]
gi|343782923|gb|AEM56900.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula hispanica ATCC
33960]
Length = 303
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 149/290 (51%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
I++ E+P P +R NT+K + L + + +P+ W GL V P GA
Sbjct: 17 FIDACERPLPSAVRVNTIKASVERVRTALADADIAYEPV-DWHD-GLFVLPEDSP-GANW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S +P L PQ ERV D AAPG KTT +AAL+++TG + A +
Sbjct: 74 PYFHGWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALIEDTGEVVATDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R+ +L N R+G T V + DG N K G DR L+D PCS G I K+
Sbjct: 134 GRISALRTNTERLGATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTL 193
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
+L ++ S +QK ++ A+++ ++ GG +VYSTC+ ENEAV+DY L +
Sbjct: 194 EDWTLSHVEGISGVQKGILKRAVEV----TEPGGTVVYSTCTFAPEENEAVLDYVLGETA 249
Query: 333 VKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V L G +++ F PS+ +R YPH ++ GFF AKL+
Sbjct: 250 CEIVDYDLPLDHAPGITEWQDETFDPSVADAKRIYPHHNDTGGFFCAKLE 299
>gi|449327958|gb|AGE94259.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter
amalonaticus Y19]
Length = 513
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 166/301 (55%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G +L P+ W + G + + +P+
Sbjct: 62 DFLAACQRPLRRSIRVNTLKISVADFLTLTAPYGWSLTPV-PWCEEGFWIERDNEDALPL 120
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + RV+D+AAAPG KTT IAA M N G I
Sbjct: 121 GSTAEHLSGLFYIQEASSMLPVAALFADDNSPNRVMDVAAAPGSKTTQIAARMGNRGAIL 180
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 181 ANEYSASRVKVLHANISRCGINNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 239
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+E + + Q++LI +A + + GG +VYSTC++ ENE+V+ +
Sbjct: 240 DPDALKNWSVESNHEIAATQRELIESAFHAL----RPGGTLVYSTCTLNREENESVLAW- 294
Query: 328 LKK---RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G D F E + E +P +++ +GFFVA+L+K +
Sbjct: 295 LKETWPEAVEFLPLG-DL-------FPEATQALTAEGFLHVFPQIYDCEGFFVARLRKTT 346
Query: 385 N 385
+
Sbjct: 347 S 347
>gi|429091377|ref|ZP_19154049.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 1210]
gi|426743989|emb|CCJ80162.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 1210]
Length = 479
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 162/299 (54%), Gaps = 22/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK + + G L P+ W G + D +P+G
Sbjct: 29 DFIAACQRPLRRSIRVNTLKISVEAFLAQVESYGWQLTPV-PWCAEGFWIARDDEALPLG 87
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
+T E+++G + +Q ASS LPV AL AP ERV+D+AAAPG KTT IAALM+N G
Sbjct: 88 STAEHLSGLFYIQEASSMLPVTALFADGNAP---ERVMDVAAAPGSKTTQIAALMQNQGF 144
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+
Sbjct: 145 ILANEYSASRVKVLHANISRCGIRNVGLTHFDGRVFGAALP-EQFDAILLDAPCSGEGVV 203
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD + S++ Q+ + Q++LI +A + GG +VYSTC++ + EN+ +
Sbjct: 204 RKDPDALRNWSVQSNQEIAATQRELIDSAFHAL----APGGTLVYSTCTLNLEENQQTVR 259
Query: 326 YALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
+ L + + L +G E + E +P +++ +GFFVA+L+K +
Sbjct: 260 WLLARYPQAVETLSL----EGLFPGAEAAL--TEEGFLHVFPQIYDCEGFFVARLRKTA 312
>gi|28898386|ref|NP_797991.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio
parahaemolyticus RIMD 2210633]
gi|153839322|ref|ZP_01991989.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus
AQ3810]
gi|260366026|ref|ZP_05778504.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus K5030]
gi|260876618|ref|ZP_05888973.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus AN-5034]
gi|81839808|sp|Q87PA5.1|RSMF_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|28806603|dbj|BAC59875.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149747154|gb|EDM58142.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus
AQ3810]
gi|308094319|gb|EFO44014.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus AN-5034]
gi|308114205|gb|EFO51745.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus K5030]
Length = 478
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 157/294 (53%), Gaps = 16/294 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK D ++G L P+ W G + +S VP+G
Sbjct: 27 DFISACQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTLSPVP-WCDNGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALMKN G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V +
Sbjct: 205 EDAMKNWTQASVLEIADTQKDLIESAFHAL----KPGGVLVYSTCTLSTEENQQVCHHLK 260
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ + LD G F + E +P V++ +GFFVA+++K
Sbjct: 261 ETFGDAVEFESLD----GL--FENANAALTEEGFLHIFPQVYDCEGFFVARIRK 308
>gi|423103640|ref|ZP_17091342.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5242]
gi|376385282|gb|EHS98003.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5242]
Length = 491
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 167/316 (52%), Gaps = 21/316 (6%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + I + ++P +R NTLK D ++ L P+ W
Sbjct: 25 EFLAQMRAAMPTHLSFDDFIAACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PW 83
Query: 136 SKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPG 190
+ G + + +P+G+ E+++G + +Q ASS LPV AL Q +RV+D+AAAPG
Sbjct: 84 CEEGFWIEREDEDDLPLGSAAEHLSGLFYIQEASSMLPVAALFADGQMPKRVMDVAAAPG 143
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAA M N G I ANE ASR+K L AN+ R G++N + ++DG L
Sbjct: 144 SKTTQIAARMGNEGGILANEYSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ECF 202
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D +LLDAPCSG GV+ KD + S E + + Q++LI +A + + GG +VY
Sbjct: 203 DAILLDAPCSGEGVVRKDPDALKNWSPESNAEIAVTQRELIDSAFHAL----RPGGTLVY 258
Query: 311 STCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
STC++ ENE V++ L + + V++VP G F + E H +P
Sbjct: 259 STCTLNRQENEEVVNGLLARYPQAVEVVPLGSLFPQASEALTEEGFLH--------VFPQ 310
Query: 369 VHNMDGFFVAKLKKMS 384
+ + +GFFVA+L+K +
Sbjct: 311 IFDCEGFFVARLRKTA 326
>gi|432369958|ref|ZP_19613047.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE10]
gi|430885585|gb|ELC08456.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE10]
Length = 481
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL AP++ V+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPKQ---VMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|420335818|ref|ZP_14837418.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-315]
gi|391264424|gb|EIQ23416.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-315]
Length = 479
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLKLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEE 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|344915260|ref|NP_707285.3| nucleolar protein [Shigella flexneri 2a str. 301]
gi|24051702|gb|AAN42992.1| putative nucleolar protein [Shigella flexneri 2a str. 301]
Length = 406
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 13 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 72 GSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 128
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE AS +K L AN+ R G++N + ++ G +V G D +LLDAPCSG
Sbjct: 129 AILANEFSASWVKVLHANISRCGISNVALTHFGG----RVFGAAVPEMFDAILLDAPCSG 184
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 185 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 240
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 241 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 291
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 292 RLRK---TQAIPALPAP 305
>gi|395229794|ref|ZP_10408105.1| ribosomal RNA small subunit methyltransferase F [Citrobacter sp.
A1]
gi|424729900|ref|ZP_18158500.1| hypothetical protein B397_1481 [Citrobacter sp. L17]
gi|394717009|gb|EJF22739.1| ribosomal RNA small subunit methyltransferase F [Citrobacter sp.
A1]
gi|422895855|gb|EKU35642.1| hypothetical protein B397_1481 [Citrobacter sp. L17]
Length = 473
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + +L P+ W G + D VP+
Sbjct: 24 DFLAACQRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPV-PWCAEGFWIERDEDESVPL 82
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 83 GSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNRGAIL 142
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L + D +LLDAPCSG GV+ K
Sbjct: 143 ANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALP-ESFDAILLDAPCSGEGVVRK 201
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q++L+ +A + + GG +VYSTC++ ENE ++ +
Sbjct: 202 DPDALKNWSPESNLEIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRDENENIMRWL 257
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ V+ +P G F E P E +P +++ +GFFVA+L+K +
Sbjct: 258 IETYPDAVEFLPLGDLFPHA------ERALTP--EGFLHVFPQIYDCEGFFVARLRKTA 308
>gi|322371799|ref|ZP_08046342.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus
DX253]
gi|320548684|gb|EFW90355.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus
DX253]
Length = 301
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 155/307 (50%), Gaps = 20/307 (6%)
Query: 83 VEMFPPVELMELIESF----EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 138
+E + P+ ++ E+F E+P P +R N +K R V P +W++
Sbjct: 4 LERYEPI--LDDFEAFRAACERPLPSVVRVNRIKATREQATRAFDEENVEWTP-REWNEN 60
Query: 139 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAA 198
V + + G T G+ Q S +P L P+ ERV+D AAPG KTT +AA
Sbjct: 61 ---VLEIEGKPGNTWPSFHGWTHGQEEVSSIPAFVLDPEPGERVLDSCAAPGSKTTQLAA 117
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDA 257
LM +TGL+ AN+ RL +L N R+GVT V N D K GL+ D L+D
Sbjct: 118 LMDDTGLVVANDSNLGRLSALRFNTERLGVTCAAVTNQDARNFSLKPFGLSAFDAALVDV 177
Query: 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317
PCS G + K+ + L+ I+ + +QK ++ A+ ++ GG +VYSTC+
Sbjct: 178 PCSCEGTVRKNPTALDDWGLDHIEGVAGVQKGILRRAVQA----TREGGTVVYSTCTFAP 233
Query: 318 TENEAVIDYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
ENEAV+DY L + D +LV D G + G + F S+ K +RFYPH ++ G
Sbjct: 234 EENEAVLDYVLAREDCRLVE--YDIGLRSEPGLTEWHGDEFDESIRKAKRFYPHHNDTGG 291
Query: 375 FFVAKLK 381
FF AKL+
Sbjct: 292 FFCAKLE 298
>gi|417701986|ref|ZP_12351107.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-218]
gi|417736690|ref|ZP_12385304.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 4343-70]
gi|418255613|ref|ZP_12879894.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
6603-63]
gi|146325706|sp|Q0T529.2|RSMF_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|146325707|sp|Q83RJ3.2|RSMF_SHIFL RecName: Full=Putative ribosomal RNA small subunit
methyltransferase F; AltName: Full=16S rRNA m5C1407
methyltransferase; AltName: Full=rRNA
(cytosine-C(5)-)-methyltransferase RsmF
gi|332762420|gb|EGJ92685.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 4343-70]
gi|333004220|gb|EGK23751.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-218]
gi|397898455|gb|EJL14838.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
6603-63]
Length = 479
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE AS +K L AN+ R G++N + ++ G +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASWVKVLHANISRCGISNVALTHFGG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|432580580|ref|ZP_19817006.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE56]
gi|431105411|gb|ELE09746.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE56]
Length = 481
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
+I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 146 VILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
V+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 ESVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
V + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 VVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPTP 322
>gi|417732337|ref|ZP_12381006.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2747-71]
gi|417743036|ref|ZP_12391577.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2930-71]
gi|332760448|gb|EGJ90737.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2747-71]
gi|332767094|gb|EGJ97289.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2930-71]
Length = 421
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE AS +K L AN+ R G++N + ++ G +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASWVKVLHANISRCGISNVALTHFGG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|345299701|ref|YP_004829059.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
asburiae LF7a]
gi|345093638|gb|AEN65274.1| Ribosomal RNA small subunit methyltransferase F [Enterobacter
asburiae LF7a]
Length = 487
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 170/334 (50%), Gaps = 38/334 (11%)
Query: 58 KEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRD 117
++++ Q++ L S+ +++F I + ++P +R NTLK D
Sbjct: 17 EQFLAQMREALPSHLSFDDF-----------------IAACQRPLRRSIRVNTLKISVTD 59
Query: 118 LADVLINRGVNLDPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
++ L P+ W + G + + +P+G+T E+++G + +Q ASS LPV AL
Sbjct: 60 FLALVSPYNWQLTPI-PWCEEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAAL 118
Query: 175 AP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
ERV+D+AAAPG KTT IAA M N G I ANE ASR+K L AN+ R G+ N
Sbjct: 119 FADGNTPERVMDVAAAPGSKTTQIAARMGNHGAILANEFSASRVKVLHANISRCGIHNVA 178
Query: 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292
+ ++DG L D +LLDAPCSG GV+ KD + S+E + Q++LI
Sbjct: 179 LTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELID 237
Query: 293 AAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY--ALKKRDVKLVPCGLDFGRQGFVRF 350
+A + + GG +VYSTC++ ENE V + A V+ +P G F
Sbjct: 238 SAFHAL----RPGGTLVYSTCTLNRDENEDVCQWLKAQYPDAVEFLPLGELFSSATEALT 293
Query: 351 REHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
E H +P +++ +GFFVA+L+K S
Sbjct: 294 PEGFLH--------VFPQIYDCEGFFVARLRKTS 319
>gi|110805371|ref|YP_688891.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5
str. 8401]
gi|424837805|ref|ZP_18262442.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5a
str. M90T]
gi|110614919|gb|ABF03586.1| putative nucleolar proteins [Shigella flexneri 5 str. 8401]
gi|383466857|gb|EID61878.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5a
str. M90T]
Length = 481
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 30 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 88
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 89 GSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 145
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE AS +K L AN+ R G++N + ++ G +V G D +LLDAPCSG
Sbjct: 146 AILANEFSASWVKVLHANISRCGISNVALTHFGG----RVFGAAVPEMFDAILLDAPCSG 201
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 202 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 257
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 258 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 308
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 309 RLRK---TQAIPALPAP 322
>gi|146325703|sp|A1RIZ0.2|RSMF_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096820|sp|A4Y7J8.2|RSMF_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 486
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 175/339 (51%), Gaps = 25/339 (7%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I + + P + + + I + ++P +R NTLK D ++ +G DP+
Sbjct: 5 NQNFIDTITQELPAHLSMDDFIAACDRPLRRSIRVNTLKISADDFKTLMQPKGWTFDPI- 63
Query: 134 KWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL------APQEKER-VIDM 185
W K G + YD + +G E++ G + +Q ASS LP AL P K + V+D+
Sbjct: 64 PWCKDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDL 123
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APG KTT IAALM N+GL+ ANE ASR+K L AN+ RMG ++ + ++DG + L
Sbjct: 124 ASAPGSKTTQIAALMHNSGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYL 183
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
+ D VL+DAPC G G + KD SL D+ S QK LI +A + K G
Sbjct: 184 -YESFDAVLIDAPCGGEGTVRKDADALKHWSLNDVLAISETQKALIESAFLAL----KPG 238
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
G +VYSTC++ EN+ V +Y + + L +G R + E
Sbjct: 239 GSLVYSTCTLNRLENQGVCEYLKQTYGDAVQFESLSDLFEGAER------ATTPEGFLHV 292
Query: 366 YPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTP 404
+P +++ +GFFVAKL K ++ + QP T+++ P
Sbjct: 293 WPQIYDSEGFFVAKLTKTASVPRL----QPEPTLQKNFP 327
>gi|305664185|ref|YP_003860473.1| RNA methylase [Ignisphaera aggregans DSM 17230]
gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
17230]
Length = 455
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 186/340 (54%), Gaps = 23/340 (6%)
Query: 47 FKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICL 106
F ++ K ++ + ++ L DL Y + F+I ++++ E ++ F PI +
Sbjct: 136 FWEMVDKISTYRLEIKDLYGDLEVRYMVSRFIIDKIIKLVGIDEAKSILREFNSRYPISI 195
Query: 107 RTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSAS 166
R N LK ++ +VL + G+N + + K+ K ++ + + Y G ++Q +
Sbjct: 196 RVNILKCSVDEVLNVLRSEGINAE-IGKYVKT-VIKFKGPYDFDRSSLYREGKIVIQDEA 253
Query: 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226
S L + L P+ E VID+ AAPGGKT ++ LM NTG+IYA ++ +R+K + L+R
Sbjct: 254 SALASILLDPKPGEVVIDLCAAPGGKTEHMGELMNNTGIIYAFDIDKTRIKRMQEILNRC 313
Query: 227 GVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYL 286
G++ + N D + ++LG N D+VL+DAPC+ +G I K++ ++ + +++ K + L
Sbjct: 314 GISIVKIFNEDARKATEILGRNIADKVLVDAPCTSSGTIMKNQELRWRITEDEVNKAAKL 373
Query: 287 QKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCG--LDFG 343
Q +L+ AI++V K GG I+Y+TCS+ ENE VI+ L+ +VK+VP LD
Sbjct: 374 QYELLETAIELV----KPGGKILYTTCSLFREENEDVIEKVLRNHSNVKIVPINGPLD-- 427
Query: 344 RQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
GF+ T R +PH H + GFF A L+K+
Sbjct: 428 -PGFI-----------AGTMRAWPHRHKLIGFFYALLQKI 455
>gi|116753601|ref|YP_842719.1| NOL1/NOP2/sun family RNA methylase [Methanosaeta thermophila PT]
gi|116665052|gb|ABK14079.1| ribosomal RNA methyltransferase NOP2 [Methanosaeta thermophila PT]
Length = 302
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 149/289 (51%), Gaps = 11/289 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++ +P P+ +R NTLKT +L L G+ + + +W +GL + D++ P G
Sbjct: 19 FLDFMSRPLPVTIRINTLKTSVPELLSRLDRLGIGYERM-RWYPLGLRL-DAEKP-GRLM 75
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
E+ G +Q S LP + L PQ ER++D+ AAPGGK I+ M N GL+ AN+ +
Sbjct: 76 EFHMGLIHVQEELSMLPPVVLDPQPGERILDLCAAPGGKAAQISMQMSNKGLVVANDSSS 135
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKT 273
+R+ L ANL R+G N +V +YDG P+ DR L+DAPCS G + V
Sbjct: 136 ARIVPLRANLERLGAVNVVVTSYDGRRFPQY----NFDRALVDAPCSSEGTARRYPEVIA 191
Query: 274 SKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333
S + LQ L+ AI + +K GG +VYSTC+ ENE V+ L D+
Sbjct: 192 RCSAKRSADLQNLQVSLLRRAIQL----TKPGGVVVYSTCTFAPEENEGVVSRVLDLADL 247
Query: 334 KLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ QG + + L K RR+YPH ++ GFFVAKL++
Sbjct: 248 ESFTIQGLRSSQGIASWNSIDYGEELVKCRRYYPHENDTGGFFVAKLRR 296
>gi|293410145|ref|ZP_06653721.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B354]
gi|291470613|gb|EFF13097.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B354]
Length = 479
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G+ N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
V + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 VVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>gi|424032440|ref|ZP_17771858.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-01]
gi|408875918|gb|EKM15056.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-01]
Length = 478
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 157/298 (52%), Gaps = 20/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + ++G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERAESKGWMLSPVP-WCDTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMDDESFDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G I KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTIRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVIEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ D D E F +P V++ +GFFVA+++K++
Sbjct: 260 KETFGDAVQFESLKDLFENAEAALTEEGF-------LHIFPQVYDCEGFFVARIRKLA 310
>gi|257096824|sp|A7N0K6.2|RSMF_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 478
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 156/298 (52%), Gaps = 20/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPVP-WCNTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQSSVVEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ D D E F +P V++ +GFFVA+++K++
Sbjct: 260 KETFGDAVEFESLKDLFENAEAALTEEGF-------LHIFPQVYDCEGFFVARIRKLT 310
>gi|153835218|ref|ZP_01987885.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01]
gi|148868284|gb|EDL67416.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01]
Length = 478
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 156/298 (52%), Gaps = 20/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPVP-WCNTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQSSVVEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ D D E F +P V++ +GFFVA+++K++
Sbjct: 260 KETFGDAVEFESLKDLFENAEAALTEEGF-------LHIFPQVYDCEGFFVARIRKLT 310
>gi|451975771|ref|ZP_21926952.1| ribosomal RNA small subunit methyltransferase F [Vibrio
alginolyticus E0666]
gi|451930285|gb|EMD77998.1| ribosomal RNA small subunit methyltransferase F [Vibrio
alginolyticus E0666]
Length = 478
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 158/301 (52%), Gaps = 26/301 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERADAKGWKLSPVP-WCDTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N+ + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANVERCGVRNSALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + QK LI +A + K GG IVYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVLDIADTQKDLIESAFHAL----KPGGVIVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHP-----SLEKTRRFYPHVHNMDGFFVAKLKKM 383
K+ FG E F + E +P V++ +GFFVA+++K+
Sbjct: 260 KET----------FGDAVEFESLETLFENANAALTEEGFLHIFPQVYDCEGFFVARIRKL 309
Query: 384 S 384
+
Sbjct: 310 A 310
>gi|295695128|ref|YP_003588366.1| Fmu (Sun) domain-containing protein [Kyrpidia tusciae DSM 2912]
gi|295410730|gb|ADG05222.1| Fmu (Sun) domain protein [Kyrpidia tusciae DSM 2912]
Length = 491
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E + E+ +PR LR NTL+ R LA I +L P+ W+ G + + P
Sbjct: 23 EAEDFFEALRQPRSRGLRVNTLRARPDALA---IRSPFSLSPV-PWAPEGFLYHHPDRP- 77
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
G P Y AG Y +Q ++ + LAPQ E V+D+AAAPGGK++++AA M+N GL+ AN
Sbjct: 78 GLHPWYDAGVYYIQEPAAMAAAVLLAPQPGEWVLDLAAAPGGKSSHLAARMENRGLLVAN 137
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
E R + L NL R+GVTN ++ L + GL DRVLLDAPC+G + KD
Sbjct: 138 EPNPRRCRVLAQNLERLGVTNALITQEQPEALLRFAGL--FDRVLLDAPCTGESMFRKDP 195
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
SV + SL I + + + ++ A D V + GG ++Y+TC+ ENE VI L+
Sbjct: 196 SVTEAWSLRRITRNAERGQHILSVAADFV----RPGGRLLYATCTFAPEENEQVIARFLR 251
Query: 330 -KRDVKLVPC---GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+RD LVP G GR + E L + R +PH DG F A L++ +
Sbjct: 252 ERRDFHLVPAELPGSSPGRPEWADGNEE-----LSRCCRLWPHRTPADGHFYALLERAED 306
Query: 386 SKKTSA 391
++ A
Sbjct: 307 ARPRGA 312
>gi|120598615|ref|YP_963189.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp.
W3-18-1]
gi|146293306|ref|YP_001183730.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
putrefaciens CN-32]
gi|386313981|ref|YP_006010146.1| RNA methylase [Shewanella putrefaciens 200]
gi|120558708|gb|ABM24635.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp.
W3-18-1]
gi|145564996|gb|ABP75931.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella
putrefaciens CN-32]
gi|319426606|gb|ADV54680.1| RNA methylase, NOL1/NOP2/sun family [Shewanella putrefaciens 200]
Length = 505
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 175/339 (51%), Gaps = 25/339 (7%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I + + P + + + I + ++P +R NTLK D ++ +G DP+
Sbjct: 24 NQNFIDTITQELPAHLSMDDFIAACDRPLRRSIRVNTLKISADDFKTLMQPKGWTFDPI- 82
Query: 134 KWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL------APQEKER-VIDM 185
W K G + YD + +G E++ G + +Q ASS LP AL P K + V+D+
Sbjct: 83 PWCKDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDL 142
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APG KTT IAALM N+GL+ ANE ASR+K L AN+ RMG ++ + ++DG + L
Sbjct: 143 ASAPGSKTTQIAALMHNSGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYL 202
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
+ D VL+DAPC G G + KD SL D+ S QK LI +A + K G
Sbjct: 203 -YESFDAVLIDAPCGGEGTVRKDADALKHWSLNDVLAISETQKALIESAFLAL----KPG 257
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRF 365
G +VYSTC++ EN+ V +Y + + L +G R + E
Sbjct: 258 GSLVYSTCTLNRLENQGVCEYLKQTYGDAVQFESLSDLFEGAER------ATTPEGFLHV 311
Query: 366 YPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTP 404
+P +++ +GFFVAKL K ++ + QP T+++ P
Sbjct: 312 WPQIYDSEGFFVAKLTKTASVPRL----QPEPTLQKNFP 346
>gi|334124514|ref|ZP_08498519.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter
hormaechei ATCC 49162]
gi|333388747|gb|EGK59920.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter
hormaechei ATCC 49162]
Length = 487
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 160/298 (53%), Gaps = 23/298 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D++ G L P+ W + G + + +P+
Sbjct: 35 DFVAACQRPLRRSIRVNTLKISVGAFLDLVSPYGWQLTPV-PWCEEGFWIERDDEESLPL 93
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 94 GSTAEHLSGLFYIQEASSMLPVAALFADDNQPERVMDVAAAPGSKTTQIAARMNNRGAIL 153
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 154 ANEFSASRVKVLHANISRCGIHNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVRK 212
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+ + + Q++LI +A + + GG +VYSTC++ ENE V +
Sbjct: 213 DPDALKNWSVASNLEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNRDENEDVCLW- 267
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
LK+R V+ +P F E H +P +++ +GFFVA+L+K
Sbjct: 268 LKQRYADAVEFLPLDTLFDSASHAATPEGFLH--------VFPQIYDCEGFFVARLRK 317
>gi|421725819|ref|ZP_16165002.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella oxytoca
M5al]
gi|410373402|gb|EKP28100.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella oxytoca
M5al]
Length = 478
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 168/317 (52%), Gaps = 22/317 (6%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + I + ++P +R NTLK D ++ L P+ W
Sbjct: 11 EFLAQMRSAMPTHLSFDDFIAACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PW 69
Query: 136 SKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE---KERVIDMAAAP 189
+ G + + +P+G+T E+++G + +Q ASS LPV AL + +R++D+AAAP
Sbjct: 70 CEEGFWIEREDEDDLPLGSTAEHLSGLFYIQEASSMLPVAALFANDGGTPQRLMDVAAAP 129
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT IAA M N G I ANE ASR+K L AN+ R G++N + ++DG L
Sbjct: 130 GSKTTQIAARMGNEGGILANEYSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EC 188
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D +LLDAPCSG GV+ KD + S E + + Q++LI +A + + GG +V
Sbjct: 189 FDAILLDAPCSGEGVVRKDPDALKNWSPESNAEIALTQRELIDSAFHAL----RPGGMLV 244
Query: 310 YSTCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
YSTC++ ENE V++ L + + V+++P G F + E H +P
Sbjct: 245 YSTCTLNRQENEEVVNGLLARYPQAVQVLPLGSLFPQASEALTDEGFLH--------VFP 296
Query: 368 HVHNMDGFFVAKLKKMS 384
+ + +GFFVA+L+K +
Sbjct: 297 QIFDCEGFFVARLRKTA 313
>gi|423124494|ref|ZP_17112173.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5250]
gi|376399939|gb|EHT12552.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5250]
Length = 491
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 169/323 (52%), Gaps = 21/323 (6%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + I + ++P +R NTLK D ++ L P+ W
Sbjct: 25 EFLAQMRAAMPTHLSFDDFIAACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PW 83
Query: 136 SKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
+ G + + +P+G+ E+++G + +Q ASS LPV AL + +RV+D+AAAPG
Sbjct: 84 CEEGFWIEREDEDDLPLGSAAEHLSGLFYIQEASSMLPVAALFAGGETPQRVMDVAAAPG 143
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAA M N G I ANE ASR+K L AN+ R G++N + ++DG L
Sbjct: 144 SKTTQIAARMGNEGGILANEYSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ECF 202
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D +LLDAPCSG GV+ KD + S E + + Q++LI +A + + GG +VY
Sbjct: 203 DAILLDAPCSGEGVVRKDPDALKNWSPESNAEIALTQRELIDSAFHAL----RPGGTLVY 258
Query: 311 STCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
STC++ ENE V++ L + + V+++P G F + E H +P
Sbjct: 259 STCTLNRQENEDVVNGLLARYPQAVEVLPLGSLFPQASEALTDEGFLH--------VFPQ 310
Query: 369 VHNMDGFFVAKLKKMSNSKKTSA 391
+ + +GFFVA+L+K + K A
Sbjct: 311 IFDCEGFFVARLRKTAAIKPLPA 333
>gi|86148632|ref|ZP_01066914.1| Sun/nucleolar protein family protein [Vibrio sp. MED222]
gi|85833588|gb|EAQ51764.1| Sun/nucleolar protein family protein [Vibrio sp. MED222]
Length = 473
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 163/314 (51%), Gaps = 16/314 (5%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M +++ + S +KP +R NTLK D +G L+P+ W
Sbjct: 10 EFLTHIESIMPSHLDMASFVASCQKPLRKSIRVNTLKISVEDFLVRAKEKGWELEPVP-W 68
Query: 136 SKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGG 191
+ G + +S+ P+G T E+M+G + +Q ASS +P AL E + V+D AAAPG
Sbjct: 69 CETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEADYQAVLDTAAAPGS 128
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT IAALM N G++ ANE ASR+K L AN+ R GV N + N+DG L D
Sbjct: 129 KTTQIAALMNNHGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFD 187
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
VLLDAPCSG G I KD + + + + + QK LI +A + N G +VYS
Sbjct: 188 AVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKPN----GVLVYS 243
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TC++ EN+ V + + +V L+ F + + E +P V++
Sbjct: 244 TCTLSTEENQQVCHHLKETFGDAVVFESLE------SLFDNAKATTTEEGFLHIFPQVYD 297
Query: 372 MDGFFVAKLKKMSN 385
+GFFVA+++K+++
Sbjct: 298 SEGFFVARIRKLAS 311
>gi|455645887|gb|EMF24930.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter freundii
GTC 09479]
Length = 462
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + +L P+ W G + + VP+
Sbjct: 13 DFLAACQRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPV-PWCAEGFWIERDEEESVPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNRGAIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L + D +LLDAPCSG GV+ K
Sbjct: 132 ANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALP-ESFDAILLDAPCSGEGVVRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q++L+ +A + + GG +VYSTC++ ENE ++ +
Sbjct: 191 DPDALKNWSPESNLEIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRDENENIMQWL 246
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ V+ +P G F E P E +P +++ +GFFVA+L+K +
Sbjct: 247 IETYPDAVEFLPLGDLFPHA------ERALTP--EGFLHVFPQIYDCEGFFVARLRKTA 297
>gi|423114992|ref|ZP_17102683.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5245]
gi|376383867|gb|EHS96594.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5245]
Length = 491
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 21/316 (6%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + I + ++P LR NTLK D ++ G L P+ W
Sbjct: 25 EFLAQMRTAMPTHLSFADFIAACQRPLRRSLRVNTLKISVADFLQLVAPYGWQLTPV-PW 83
Query: 136 SKVGLVV---YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPG 190
+ G + + +P+G+T E+++G + +Q ASS LPV AL RV+D+AAAPG
Sbjct: 84 CEEGFWIDREEEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNMPNRVMDVAAAPG 143
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAA M N G I ANE ASR+K L AN+ R G+ N + ++DG L
Sbjct: 144 SKTTQIAARMGNKGGILANEYSASRVKVLHANISRCGIGNVALTHFDGRVFGAALP-ECF 202
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D +LLDAPCSG GV+ KD + S E + Q++LI +A + + GG +VY
Sbjct: 203 DAILLDAPCSGEGVVRKDPDALKNWSPESNASIAETQRELIDSAFHAL----RPGGTLVY 258
Query: 311 STCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
STC++ ENE V++ L + + +++P G F + E H +P
Sbjct: 259 STCTLNRQENEDVVNGLLARYPQAAEVLPLGSLFPQASEALTEEGFLH--------VFPQ 310
Query: 369 VHNMDGFFVAKLKKMS 384
+ + +GFFVA+L+K +
Sbjct: 311 IFDCEGFFVARLRKTA 326
>gi|377576171|ref|ZP_09805155.1| ribosomal RNA small subunit methyltransferase F [Escherichia
hermannii NBRC 105704]
gi|377542203|dbj|GAB50320.1| ribosomal RNA small subunit methyltransferase F [Escherichia
hermannii NBRC 105704]
Length = 478
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 165/321 (51%), Gaps = 20/321 (6%)
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
S Y ++FL M + + I++ ++P +R NTLK D ++ L
Sbjct: 6 SVYLPDDFLTAMRDAMPASLSMDSFIDACQRPLRRSIRVNTLKISVSDFLALVEPYAWQL 65
Query: 130 DPLSKWSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE--RVIDM 185
P+ W + G + D P+G++ E+++G + +Q ASS LPV AL RV+D+
Sbjct: 66 SPI-PWCEEGFWIERDDEDFPLGSSAEHLSGLFYIQEASSMLPVAALFADNPSFARVMDV 124
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
AAAPG KTT IAA MKN G I ANE ASR+K L AN+ R G++N + ++DG L
Sbjct: 125 AAAPGSKTTQIAARMKNQGAILANEYAASRVKVLAANISRCGISNVALTHFDGRVFGAAL 184
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
D +LLDAPCSG GV+ KD + S+ + + Q++LI +A + + G
Sbjct: 185 P-EAFDAILLDAPCSGEGVVRKDPDALRNWSIASNEAIAATQRELIDSAFHAL----RPG 239
Query: 306 GYIVYSTCSIMVTENEAVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
G +VYSTC++ ENE V + L + V + P G F + H
Sbjct: 240 GTLVYSTCTLNREENEQVCQWLLARYPDAVCVEPLGELFSGAQQALTDDGFLH------- 292
Query: 364 RFYPHVHNMDGFFVAKLKKMS 384
+P + + +GFFVA+L+K +
Sbjct: 293 -VFPQIFDCEGFFVARLRKTA 312
>gi|257096815|sp|A8GDM6.2|RSMF_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 478
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 160/298 (53%), Gaps = 24/298 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P LR NTLK D ++ + L+P+ W G + D ++ +G
Sbjct: 29 DFIAACQRPLRRSLRVNTLKISVTDFLTLVQDYDWRLEPI-PWCAEGFWIERGDEELRLG 87
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
+ E+++G + +Q ASS LPV AL + RV+D+AAAPG KTT IAALM N G I A
Sbjct: 88 SAAEHLSGLFYIQEASSMLPVSALFAGAEAPSRVLDVAAAPGSKTTQIAALMNNQGGIVA 147
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + ++DG L + D +LLDAPCSG GV+ KD
Sbjct: 148 NEYSASRVKVLHANISRCGVKNVALTHFDGRVFGAALP-ESFDAILLDAPCSGEGVVRKD 206
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
++ S E + + Q++LI +A + GG +VYSTC++ EN+ +++ L
Sbjct: 207 PDAMSNWSPESVTAIADTQRELIDSAFHAL----APGGVMVYSTCTLNAQENQQIVNGLL 262
Query: 329 KKRD--VKLVPCGLDF--GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V + P G F +Q + E +P +++ +GFFVA+L+K
Sbjct: 263 ATYGDAVSIEPLGDLFPGAKQAL----------TAEGFLHVFPQIYDSEGFFVARLRK 310
>gi|423109032|ref|ZP_17096727.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5243]
gi|376383226|gb|EHS95954.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5243]
Length = 491
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 21/316 (6%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + I + ++P LR NTLK D ++ G L P+ W
Sbjct: 25 EFLAQMRTAMPTHLSFADFIAACQRPLRRSLRVNTLKISVADFLQLVAPYGWQLTPV-PW 83
Query: 136 SKVGLVV---YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPG 190
+ G + + +P+G+T E+++G + +Q ASS LPV AL RV+D+AAAPG
Sbjct: 84 CEEGFWIDREEEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNMPNRVMDVAAAPG 143
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT IAA M N G I ANE ASR+K L AN+ R G+ N + ++DG L
Sbjct: 144 SKTTQIAARMGNKGGILANEYSASRVKVLHANISRCGIGNVALTHFDGRVFGAALP-ECF 202
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D +LLDAPCSG GV+ KD + S E + Q++LI +A + + GG +VY
Sbjct: 203 DAILLDAPCSGEGVVRKDPDALKNWSPESNASIAETQRELIDSAFHAL----RPGGTLVY 258
Query: 311 STCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
STC++ ENE V++ L + + +++P G F + E H +P
Sbjct: 259 STCTLNRQENEDVVNGLLARYPQAAEVLPLGSLFPQASEALTEEGFLH--------VFPQ 310
Query: 369 VHNMDGFFVAKLKKMS 384
+ + +GFFVA+L+K +
Sbjct: 311 IFDCEGFFVARLRKTA 326
>gi|237731873|ref|ZP_04562354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter sp. 30_2]
gi|226907412|gb|EEH93330.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter sp. 30_2]
Length = 473
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E + + ++P +R NTLK D + +L P+ W G + + VP+
Sbjct: 24 EFLAACQRPLRRSIRVNTLKISVADFLALTAPYNWSLTPV-PWCAEGFWIERDDEESVPL 82
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N G I
Sbjct: 83 GSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNRGAIL 142
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L + D +LLDAPCSG GV+ K
Sbjct: 143 ANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALP-ESFDAILLDAPCSGEGVVRK 201
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+E + + Q++L+ +A + + GG +VYSTC++ ENE ++ +
Sbjct: 202 DPDALKNWSVESNLEIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRDENENIMQWL 257
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ V+ +P F + E P E +P +++ +GFFVA+L+K +
Sbjct: 258 IETYPDAVEFLPLDDLFPQA------ERALTP--EGFLHVFPQIYDCEGFFVARLRKTA 308
>gi|420372006|ref|ZP_14872351.1| ribosomal RNA small subunit methyltransferase F, partial [Shigella
flexneri 1235-66]
gi|391318684|gb|EIQ75787.1| ribosomal RNA small subunit methyltransferase F, partial [Shigella
flexneri 1235-66]
Length = 299
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 7 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 65
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 66 GSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 122
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE AS +K L AN+ R G++N + ++ G +V G D +LLDAPCSG
Sbjct: 123 AILANEFSASWVKVLHANISRCGISNVALTHFGG----RVFGAAVPEMFDAILLDAPCSG 178
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 179 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 234
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 235 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 285
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 286 RLRK---TQAIPALPAP 299
>gi|337288807|ref|YP_004628279.1| RNA methylase, NOL1/NOP2/sun family [Thermodesulfobacterium sp.
OPB45]
gi|334902545|gb|AEH23351.1| RNA methylase, NOL1/NOP2/sun family [Thermodesulfobacterium
geofontis OPF15]
Length = 316
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 163/296 (55%), Gaps = 17/296 (5%)
Query: 97 SFEKPRPICLRTNTLKTRRRD----LADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
S + P P R NTLK ++ L ++L +GVN + + + V+ + ++ +G
Sbjct: 30 SLKFPIPQYFRINTLKVPTKEDQEYLLEILRKKGVNFEKIEEIPYFYRVLNNEEISLGNL 89
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
EY G + SS LPV+AL P+ + ++DM AAPGGKT IA + ++ ++ +N+ +
Sbjct: 90 EEYSLGLIHSMTLSSSLPVIALDPKPGDLILDMCAAPGGKTGLIAMMTEDKAIVVSNDKR 149
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG--VISKDES 270
RL +L AN+ R+G+T TI Y G P + N ++L+DAPC+G G + +
Sbjct: 150 IDRLTALVANIKRLGITCTITTRYRGEHFPFGIPFN---KILVDAPCTGEGRYRVGLEGE 206
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
+ K S +QK L++ A D+V+ GG IVYSTC+I ENE V+DY L+K
Sbjct: 207 ILYQKGSGKANLPS-IQKGLLVRAFDLVEP----GGIIVYSTCTINPKENEEVVDYLLRK 261
Query: 331 RDVKLVPC--GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
R +L+ L F G + +HPSL+ ++R+Y H GFFVAK+K+++
Sbjct: 262 RQAELLDWESPLPF-HPGITEWEGKPYHPSLKLSKRYYTHEIQAVGFFVAKIKRIN 316
>gi|421783182|ref|ZP_16219633.1| ribosomal RNA small subunit methyltransferase F [Serratia
plymuthica A30]
gi|407754622|gb|EKF64754.1| ribosomal RNA small subunit methyltransferase F [Serratia
plymuthica A30]
Length = 478
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 169/317 (53%), Gaps = 25/317 (7%)
Query: 88 PVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-- 143
P EL + I + ++P LR NTLK D ++ + L+P+ W G +
Sbjct: 22 PAELSMDDFIAACQRPLRRSLRVNTLKISVADFQALVQDYDWRLEPI-PWCAEGFWIERE 80
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMAL-APQEK-ERVIDMAAAPGGKTTYIAALMK 201
D ++ +G+ E+++G + +Q ASS LPV AL A +EK RV+D+AAAPG KTT IAALM
Sbjct: 81 DEELRLGSAAEHLSGLFYIQEASSMLPVSALFADREKPRRVLDVAAAPGSKTTQIAALMN 140
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N G I ANE ASR+K L AN+ R GV N + ++DG L + D +LLDAPCSG
Sbjct: 141 NQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRVFGAALP-ESFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD ++ S E + + Q++LI +A + G +VYSTC++ EN+
Sbjct: 200 EGVVRKDPDAMSNWSPESVTAIAATQRELIDSAFHAL----APSGVMVYSTCTLNAQENQ 255
Query: 322 AVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
+++ L V + P G F E H +P +++ +GFFVA+
Sbjct: 256 QIVNGLLAAYGDAVSIEPLGELFPGAEKALTAEGFLH--------VFPQIYDSEGFFVAR 307
Query: 380 LKKMSNSKKTSAGPQPS 396
L+K + + P+PS
Sbjct: 308 LRK---NHSVAPLPKPS 321
>gi|146325695|sp|Q6LQU5.2|RSMF_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 476
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 157/298 (52%), Gaps = 23/298 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I S P +R NTLK D + ++ L P+ W G + + V +
Sbjct: 27 EFIASCRTPLRRSIRVNTLKISVEDFLVRVSDKDWTLTPVP-WCDTGFWIEREDEKSVSL 85
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G T E+MAG + +Q ASS +PV AL + V+DMA+APG KTT IA M+N G++
Sbjct: 86 GNTAEHMAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGVLV 145
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE+ ASR+K L ANL R GV N + ++DG + D +LLDAPCSG G I K
Sbjct: 146 ANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGG-WAPESFDTILLDAPCSGEGAIRK 204
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + SL I+ + +Q+ LI++A + K+GG +VYSTC++ ++EN+ V +
Sbjct: 205 DGDAMANWSLSSIEDIAAIQRNLIISAFQAL----KTGGMMVYSTCTLNLSENQHVCHF- 259
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
LK+ V+ P G D E F YP + + +GFFVA+++K
Sbjct: 260 LKETFGDAVEFEPLG-DLFEGAEKSLTEDGF-------LHVYPQIFDSEGFFVARIRK 309
>gi|269967589|ref|ZP_06181641.1| NOL1/NOP2/sun family protein [Vibrio alginolyticus 40B]
gi|269827827|gb|EEZ82109.1| NOL1/NOP2/sun family protein [Vibrio alginolyticus 40B]
Length = 518
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 158/301 (52%), Gaps = 26/301 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 67 DFIASCQKPLRKSIRVNTLKISVEAFLERAETKGWKLSPV-PWCDTGFWIEADESVVPLG 125
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 126 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 185
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 186 NEYAASRVKVLHANVERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 244
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 245 EDAMKNWTQASVLDIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 299
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHP-----SLEKTRRFYPHVHNMDGFFVAKLKKM 383
K+ FG E+ F + E +P V++ +GFFVA+++K+
Sbjct: 300 KET----------FGDAVEFESLENLFENAEAALTEEGFLHIFPQVYDCEGFFVARIRKL 349
Query: 384 S 384
+
Sbjct: 350 A 350
>gi|417952066|ref|ZP_12595140.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
ATCC 33789]
gi|342803115|gb|EGU38495.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
ATCC 33789]
Length = 473
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 166/319 (52%), Gaps = 26/319 (8%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M +++ + S +KP +R NTLK D ++G L+P+ W
Sbjct: 10 EFLTHIESIMPSHLDMASFVASCQKPLRKSIRVNTLKISVEDFLVRAKDKGWELEPVP-W 68
Query: 136 SKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGG 191
+ G + +++ P+G T E+M+G + +Q ASS +P AL E+ + V+D AAAPG
Sbjct: 69 CETGFWITADETEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEENYQAVLDTAAAPGS 128
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT IAALM N G++ ANE ASR+K L AN+ R GV N + N+DG L D
Sbjct: 129 KTTQIAALMNNCGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFD 187
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
VLLDAPCSG G I KD + + + + + + QK LI +A + N G +VYS
Sbjct: 188 AVLLDAPCSGEGTIRKDADAMKNWTYQSVVEIADTQKDLIESAFHALRPN----GVLVYS 243
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR-----RFY 366
TC++ EN+ V + LK+ FG E F + T +
Sbjct: 244 TCTLSTEENQQVCHH-LKET----------FGDAVEFESLESLFDNAKATTTEEGFLHIF 292
Query: 367 PHVHNMDGFFVAKLKKMSN 385
P V++ +GFFVA+++K+++
Sbjct: 293 PQVYDSEGFFVARIRKLAS 311
>gi|218883897|ref|YP_002428279.1| putative RNA methylase, NOL1/NOP2/sun family [Desulfurococcus
kamchatkensis 1221n]
gi|218765513|gb|ACL10912.1| putative RNA methylase, NOL1/NOP2/sun family [Desulfurococcus
kamchatkensis 1221n]
Length = 340
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 22/330 (6%)
Query: 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINR 125
++L YGY +++ +EM P E +EL+E+FEKP +R NTL R +L + L +
Sbjct: 19 VELALRYGYLPYMVQRYLEMLGPDEALELLEAFEKPVKPVVRVNTLLIRPGELMERLESL 78
Query: 126 GVNLD-----PLSKWSKVGLVVYDSQVP-IGATPEYMAGFYMLQ-SASSFLPVMALAPQE 178
G L+ P S W VV + P IG+T EY+ G+Y + ASS +PV+ L
Sbjct: 79 GFQLEEIPWAPASFW-----VVKTPRSPTIGSTHEYLKGYYYIHRDASSLIPVLLLLHNY 133
Query: 179 KERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
+ V+D AAPGGK T++A ++K G++YAN+ RLK+L +L RM + N +V
Sbjct: 134 EGDVLDACAAPGGKATFMAQILKERGKGIVYANDYVLYRLKTLVGHLLRMKLDNVVVAWS 193
Query: 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296
+ LP LG R+LLDAPCSG G IS D KT S+ D+ + + L+ ID
Sbjct: 194 NALNLPGKLG-RRFKRILLDAPCSGEGRISVDPGRKTRTSILDLAMLAKREILLLDRLID 252
Query: 297 MVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQ--GFVRFREH 353
++D N G + YSTCSI ENE V+ L R D++++ L +R
Sbjct: 253 LLDEN----GVLAYSTCSIAPEENEYVLSRILNSRSDIEIIEPELKLFNYSPWLTHYRSM 308
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
F LEK R +PH H + GF ++++
Sbjct: 309 EFPRDLEKCIRVWPHRHGLFGFTTCLIRRI 338
>gi|114793858|pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793859|pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793860|pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793861|pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 168/317 (52%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV D+AAAPG KTT I+A N G
Sbjct: 87 GSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ---RVXDVAAAPGSKTTQISARXNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEXFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|156974634|ref|YP_001445541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio harveyi ATCC
BAA-1116]
gi|156526228|gb|ABU71314.1| hypothetical protein VIBHAR_02352 [Vibrio harveyi ATCC BAA-1116]
Length = 501
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 156/298 (52%), Gaps = 20/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 50 DFIASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPVP-WCNTGFWIEADESVVPLG 108
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 109 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 168
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 169 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 227
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 228 EDAMKNWTQSSVVEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 282
Query: 329 KKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ D D E F +P V++ +GFFVA+++K++
Sbjct: 283 KETFGDAVEFESLKDLFENAEAALTEEGF-------LHIFPQVYDCEGFFVARIRKLT 333
>gi|444426628|ref|ZP_21222039.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|444240121|gb|ELU51669.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 478
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 158/303 (52%), Gaps = 30/303 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPVP-WCNTGFWIKADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY-- 326
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V +
Sbjct: 205 EDAMKNWTQSSVVEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHHLK 260
Query: 327 -----ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
A++ +K + F + E +P V++ +GFFVA+++
Sbjct: 261 ETFGDAVEFESLKEL-------------FENAEAALTEEGFLHIFPQVYDCEGFFVARIR 307
Query: 382 KMS 384
K++
Sbjct: 308 KLT 310
>gi|427731853|ref|YP_007078090.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
gi|427367772|gb|AFY50493.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
Length = 449
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 171/324 (52%), Gaps = 23/324 (7%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
LG + + +++I +E L E + I LR N L+T ++ L + G+
Sbjct: 145 LGILHSFPDWIIEVWLEQLGLEATERLCEWMNQTPTIDLRINPLRTSIEEVETSLTSAGI 204
Query: 128 NLDPLSKWSK---VGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
L++W L + + PI P + G++++Q AS+ L L PQ E V+D
Sbjct: 205 ----LARWIPNLPQALRLIGNTGPIKNLPGFSQGWWVVQDASAQLVSHFLDPQPGEVVVD 260
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
AAPGGKTT++A LM++ G I+A + ASRL+ L N R+G+ + +C D +L +
Sbjct: 261 ACAAPGGKTTHMAELMEDQGKIWACDRTASRLRKLKENAQRLGLHSIQICTGDSRDLSQF 320
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
+T DRVLLDAPCSG G + + + ++ E + + S LQK+L+ + V K
Sbjct: 321 --NHTADRVLLDAPCSGLGTLHRHADARWRQTPESVFELSTLQKELMSQTSNFV----KP 374
Query: 305 GGYIVYSTCSIMVTENEAVI-DYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
GG +VY+TC++ ENE VI ++ K D ++V LD G+ + +
Sbjct: 375 GGVLVYATCTLHPAENEDVITEFLTKHPDWQIVAPSLDSPYAGYA---------TPQGWL 425
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSK 387
+ +PH +MDGFF+ +L+K +NS+
Sbjct: 426 KVWPHCEDMDGFFMVRLRKTNNSE 449
>gi|18977925|ref|NP_579282.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus furiosus DSM
3638]
gi|397652046|ref|YP_006492627.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus furiosus COM1]
gi|18893693|gb|AAL81677.1| putative nucleolar protein I (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
gi|393189637|gb|AFN04335.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus furiosus COM1]
Length = 311
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 154/285 (54%), Gaps = 10/285 (3%)
Query: 100 KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK-VGLVVYDSQVPIGATPEYMAG 158
KP +R NTLK ++ L+ L+P+ W+K G + +V G EY G
Sbjct: 33 KPLRPSIRINTLKGHLNEIKS-LLEEKFELEPIP-WTKGEGFFIKRYEVNFGELIEYSLG 90
Query: 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS 218
+ Q ASS +P + L PQ E V+DMAAAPG KTT IA M N G I AN+ K R
Sbjct: 91 LIIPQEASSMIPPVVLDPQPGELVLDMAAAPGSKTTQIAQYMNNEGCIIANDAKRDRANI 150
Query: 219 LTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLE 278
L +NL++ GV V DG + NT D++LLDAPCS G+I K+ + S+
Sbjct: 151 LISNLNKAGVLIAKVTVKDGAYFRRY--ENTFDKILLDAPCSSVGMIRKNFKFARTWSMG 208
Query: 279 DIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338
+ S LQK+LILAA + K GG +VYSTC++ ENE V+D+ L+K D KL
Sbjct: 209 KVYYHSKLQKRLILAAYKAL----KPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKI 264
Query: 339 GLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
L + + + ++ L+KT R +P ++ + F++AK++K
Sbjct: 265 NLPLKSTEPVLEWEGKKYSDELKKTLRIHPQDNDTEAFYIAKIRK 309
>gi|379010238|ref|YP_005268050.1| ribosomal RNA small subunit methyltransferase F [Acetobacterium
woodii DSM 1030]
gi|375301027|gb|AFA47161.1| ribosomal RNA small subunit methyltransferase F [Acetobacterium
woodii DSM 1030]
Length = 466
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 191/369 (51%), Gaps = 25/369 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
L++S+++P +RTNTLK + +L +L + ++ KW + G + D +V G P
Sbjct: 22 LLDSYDQPESKGIRTNTLKLKPAELVKILPFKTQDV----KWCEAGFYI-DHEVRPGKNP 76
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y AG Y +Q ++ V L PQ E V+D+ AAPGGK+T I A ++ G++ ANE+
Sbjct: 77 YYYAGLYYVQEPTAMATVEVLDPQPGEWVLDLCAAPGGKSTQIGAKLQGQGILVANELVN 136
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLNTVDRVLLDAPCSGTGVISKDES 270
SR L++N+ RMG+ N IV NE P+ L + D++++DAPCSG G+ KD
Sbjct: 137 SRAGILSSNIERMGIANAIVT----NEFPERLVDSFHESFDKIVVDAPCSGEGMFRKDPG 192
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
SLE + +C Q++++ +A ++ K GG +VYSTC+ ENE +I+ + K
Sbjct: 193 ALADWSLERVDRCVGKQEKILESAHRLL----KPGGVLVYSTCTFSPEENEQMIESFIAK 248
Query: 331 RDVKLVPCGL----DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL-KKMSN 385
L L D GR + R E ++EK+ R P N +G F+AKL K +
Sbjct: 249 YPYTLADMKLSGITDHGRVEWTRQNEK----AIEKSLRIMPMNVNGEGHFIAKLIKSETA 304
Query: 386 SKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGLAENG 445
S+ +A P ++ ++ ++ + + + N E KK + L + L E
Sbjct: 305 SELRTAKPGYPKSRLKKASQTELIDYQNFVKNNLEPGFYKKFENRLYLLGEHLYALPEGI 364
Query: 446 NVESPSNEK 454
++E +N K
Sbjct: 365 DLEKIANLK 373
>gi|388601384|ref|ZP_10159780.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
DS40M4]
Length = 478
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 156/298 (52%), Gaps = 20/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPVP-WCNTGFWIKADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R G+ N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGIRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQSSVVEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVC-HQL 259
Query: 329 KKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ D D E F +P V++ +GFFVA+++K++
Sbjct: 260 KETFGDAVEFESLKDLFENAEAALTEEGF-------LHIFPQVYDCEGFFVARIRKLT 310
>gi|157370355|ref|YP_001478344.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia
proteamaculans 568]
gi|157322119|gb|ABV41216.1| putative RNA methylase, NOL1/NOP2/sun family [Serratia
proteamaculans 568]
Length = 503
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 160/298 (53%), Gaps = 24/298 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P LR NTLK D ++ + L+P+ W G + D ++ +G
Sbjct: 54 DFIAACQRPLRRSLRVNTLKISVTDFLTLVQDYDWRLEPI-PWCAEGFWIERGDEELRLG 112
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
+ E+++G + +Q ASS LPV AL + RV+D+AAAPG KTT IAALM N G I A
Sbjct: 113 SAAEHLSGLFYIQEASSMLPVSALFAGAEAPSRVLDVAAAPGSKTTQIAALMNNQGGIVA 172
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + ++DG L + D +LLDAPCSG GV+ KD
Sbjct: 173 NEYSASRVKVLHANISRCGVKNVALTHFDGRVFGAALP-ESFDAILLDAPCSGEGVVRKD 231
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
++ S E + + Q++LI +A + GG +VYSTC++ EN+ +++ L
Sbjct: 232 PDAMSNWSPESVTAIADTQRELIDSAFHAL----APGGVMVYSTCTLNAQENQQIVNGLL 287
Query: 329 KKRD--VKLVPCGLDF--GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V + P G F +Q + E +P +++ +GFFVA+L+K
Sbjct: 288 ATYGDAVSIEPLGDLFPGAKQAL----------TAEGFLHVFPQIYDSEGFFVARLRK 335
>gi|170290689|ref|YP_001737505.1| RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174769|gb|ACB07822.1| RNA methylase, NOL1/NOP2/sun family [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 329
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 157/297 (52%), Gaps = 17/297 (5%)
Query: 93 ELIESFEKPRPI-CLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
E SF RP+ +R N +K L VL G L + W G V +G
Sbjct: 41 ETFLSFMAKRPVPSIRVNPMKIDPEWLLSVLRANGWELSQIP-WYGYGYRVIRGPERLGN 99
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
T + G Y +Q A+S +P + L+P+ ERV+D+AA+PG K T I+ +M GL+ AN++
Sbjct: 100 TEWHQLGLYYVQEAASMVPPVLLSPKPGERVLDLAASPGSKATQISEMMLYKGLVVANDV 159
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
R+ SL++N+ RMG N +V +DG P VLG + D+VLLD+PCS G + +
Sbjct: 160 SPERVDSLSSNVQRMGSMNVVVTMFDGRRAPDVLGRESFDKVLLDSPCSSLGEVRRSWGA 219
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV------ID 325
S +++K S LQ L AA + + K GG +VYSTC+ ENE V I
Sbjct: 220 LARWSPRNVEKISRLQVSLAKAAYETL----KPGGLMVYSTCTFEPKENEWVVYKLLEIG 275
Query: 326 YALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+++ +VK GL + R+G ++ + F +EK R YP ++ GFF+A L+K
Sbjct: 276 AVIEEPEVK----GLVW-RKGLRKWMDWDFGNEMEKCMRIYPQDNDTIGFFIAVLRK 327
>gi|350531222|ref|ZP_08910163.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio rotiferianus
DAT722]
Length = 478
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 157/298 (52%), Gaps = 20/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W + G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERAEAKGWTLFPVP-WCETGFWIEADESIVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVVEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ D D E F +P V++ +GFFVA+++K++
Sbjct: 260 KETFGDAVEFESLKDLFENAEAALTEEGF-------LHIFPQVYDCEGFFVARIRKLT 310
>gi|91227972|ref|ZP_01262082.1| Sun/nucleolar protein family protein [Vibrio alginolyticus 12G01]
gi|91188293|gb|EAS74591.1| Sun/nucleolar protein family protein [Vibrio alginolyticus 12G01]
Length = 478
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERAETKGWKLSPVP-WCDTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANVERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVLDIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCQH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ V +F R + F + E +P V++ +GFFVA+++K +
Sbjct: 260 KETFGDAV----EFERLENL-FENAEAALTEEGFLHIFPQVYDSEGFFVARIRKQA 310
>gi|54309113|ref|YP_130133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Photobacterium
profundum SS9]
gi|46913545|emb|CAG20331.1| putative sun/nucleolar protein family protein [Photobacterium
profundum SS9]
Length = 484
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 157/298 (52%), Gaps = 23/298 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I S P +R NTLK D + ++ L P+ W G + + V +
Sbjct: 35 EFIASCRTPLRRSIRVNTLKISVEDFLVRVSDKDWTLTPVP-WCDTGFWIEREDEKSVSL 93
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G T E+MAG + +Q ASS +PV AL + V+DMA+APG KTT IA M+N G++
Sbjct: 94 GNTAEHMAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGVLV 153
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE+ ASR+K L ANL R GV N + ++DG + D +LLDAPCSG G I K
Sbjct: 154 ANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGG-WAPESFDTILLDAPCSGEGAIRK 212
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + SL I+ + +Q+ LI++A + K+GG +VYSTC++ ++EN+ V +
Sbjct: 213 DGDAMANWSLSSIEDIAAIQRNLIISAFQAL----KTGGMMVYSTCTLNLSENQHVCHF- 267
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
LK+ V+ P G D E F YP + + +GFFVA+++K
Sbjct: 268 LKETFGDAVEFEPLG-DLFEGAEKSLTEDGF-------LHVYPQIFDSEGFFVARIRK 317
>gi|14520839|ref|NP_126314.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|74581685|sp|Q9V106.1|TRCM_PYRAB RecName: Full=tRNA (cytosine(49)-C(5))-methyltransferase
gi|5458055|emb|CAB49545.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
gi|380741383|tpe|CCE70017.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 311
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 154/292 (52%), Gaps = 10/292 (3%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK-VGLVVYDSQVPIGA 151
E KP +R NTLK +++ L+ L+P+ W+K G + V G
Sbjct: 26 EFWAYLYKPLRPSIRINTLKGNLKEIK-ALLEEKFELEPIP-WTKGEGFYIKSYDVNYGQ 83
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
EY G + Q ASS +P + L P+ E ++DMAAAPG KTT +A M+N G I AN+
Sbjct: 84 LIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDA 143
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV 271
K R L ANL R GV V DG + NT DRVLLDAPCS G+I K+
Sbjct: 144 KRDRANILIANLTRAGVLIAKVTVKDGAYFARY--ENTFDRVLLDAPCSSVGMIRKNFKF 201
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
+ S+ + S LQK+LILAA + K GG +VYSTC++ ENE V+D+ L+K
Sbjct: 202 ARTWSIGKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPLENEEVVDFLLQKT 257
Query: 332 DVKLVPCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
D KL L + + + ++ + KT R +P ++ + F++AK++K
Sbjct: 258 DAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
>gi|167624296|ref|YP_001674590.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
halifaxensis HAW-EB4]
gi|189045729|sp|B0TIZ6.1|RSMF_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|167354318|gb|ABZ76931.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella
halifaxensis HAW-EB4]
Length = 479
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 162/321 (50%), Gaps = 38/321 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGL-VVYDSQVPIGA 151
+ I KP + +R NTLK + D++ +G + DP+ W G V S + +G
Sbjct: 24 DFIAYSNKPLRLSIRVNTLKISTENFIDLMSAKGWSFDPIP-WCNQGFWVTISSDLQLGN 82
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKE-----------RVIDMAAAPGGKTTYIAALM 200
T E++ G + +Q ASS LP AL + RV+DMA+APG KTT IAALM
Sbjct: 83 TIEHLQGLFYIQEASSMLPPTALFDSHADNENDLSQFAQTRVLDMASAPGSKTTQIAALM 142
Query: 201 KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260
N GL+ ANE ASR+K L AN+ RMGV+N + ++D + L T D VLLDAPCS
Sbjct: 143 NNQGLLVANEYSASRVKVLHANVARMGVSNCALTHFDARVFGEYL-FETFDSVLLDAPCS 201
Query: 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320
G G I KD + D + QK LI +A + K GG +VYSTC++ EN
Sbjct: 202 GEGTIRKDPDALKNWDNNDNKGIVDTQKALIESAFLAL----KVGGCLVYSTCALSRQEN 257
Query: 321 EAVIDYALKKRDVKLVPCGLDFGRQ-GFVRFREHRFHPSLEKT------RRFYPHVHNMD 373
+ V + LK FG F E P +K +P +++ +
Sbjct: 258 QDVCHH-LKTA----------FGEAVEFAALTE--LFPDADKACTEEGFLHVWPQIYDSE 304
Query: 374 GFFVAKLKKMSNSKKTSAGPQ 394
GFFVAK++K+S ++T P+
Sbjct: 305 GFFVAKIRKVSAVERTLPEPK 325
>gi|424038755|ref|ZP_17777275.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-02]
gi|408893764|gb|EKM30856.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-02]
Length = 478
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 157/298 (52%), Gaps = 20/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + ++G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVETFLERAESKGWTLSPVP-WCDTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMDDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L + VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFNAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVIEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ D D E F +P V++ +GFFVA+++K++
Sbjct: 260 KETFGDAVQFESLKDLFENAEAALTEEGF-------LHIFPQVYDCEGFFVARIRKLT 310
>gi|448448406|ref|ZP_21591219.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum litoreum
JCM 13561]
gi|445814822|gb|EMA64780.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum litoreum
JCM 13561]
Length = 309
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 153/297 (51%), Gaps = 13/297 (4%)
Query: 91 LMELIESF----EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
L++ +++F ++P P +RTN + + + GV +P+ W GL
Sbjct: 10 LVDDVDAFRAACDRPLPSVVRTNEIAATPARVREAFDEAGVAYEPVD-WHD-GLFRLPDG 67
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
P G P Y+ G+ Q S LP +AL P+ ERV D AAPG KTT IA M + G +
Sbjct: 68 NPGGNWP-YVHGWTHGQEEVSVLPTLALDPRPGERVWDACAAPGSKTTQIADAMDDEGTV 126
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVI 265
AN+ RL +L N R+G+TN IV N D N K L + DR L+DAPCS G
Sbjct: 127 VANDNNLGRLSALRHNAERLGITNAIVTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTC 186
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
K+ V +L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D
Sbjct: 187 RKNPDVLDQWTLDHVHAVAGIQKGVLARAVQA----TRPGGVVVYSTCTFAPEENEAVLD 242
Query: 326 YALKKRDVKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ L + D +LV L G ++ + S+ + +R YPH ++ GFF AKL+
Sbjct: 243 HVLDEEDCELVEFDLPLDTDPGVTQWDGEAYDESVTRAKRVYPHRNDTGGFFCAKLR 299
>gi|381404290|ref|ZP_09928974.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pantoea sp. Sc1]
gi|380737489|gb|EIB98552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pantoea sp. Sc1]
Length = 477
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 169/321 (52%), Gaps = 32/321 (9%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIGATPEYM 156
++P LR NTLK D + + L P+ W + G + D +P+G+ E++
Sbjct: 36 QQPLRRTLRVNTLKISVADFLRLTADYEWQLTPV-PWCEEGFWISREDESLPLGSVAEHL 94
Query: 157 AGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKAS 214
+G + +Q ASS LPV AL A V+DMAAAPG KTT IAA M N G+I ANE +S
Sbjct: 95 SGLFYIQEASSMLPVTALFDAQTAVSAVMDMAAAPGSKTTQIAARMGNQGIILANEFSSS 154
Query: 215 RLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGTGVISKDES 270
R+K L AN+ R GVTN+ + ++D G LP+ D +LLDAPCSG GV+ KD
Sbjct: 155 RVKVLHANITRCGVTNSALTHFDARVFGPALPE-----QFDAILLDAPCSGEGVMRKDPD 209
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
+ SL ++ + Q+ L+ +A + K GG +VYSTC++ EN+ VI + L++
Sbjct: 210 ALRNWSLASTEEIAATQRDLLDSAFHAL----KPGGTLVYSTCTLNQIENQQVIAWLLQR 265
Query: 331 R--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK 388
V+++P F E H +P + + +GFFVA+L+K ++
Sbjct: 266 YPDAVEILPLNELFAGAEQAATPEGYLH--------VFPQMFDSEGFFVARLRKTASVDP 317
Query: 389 TSAGPQPSETVEQQTPESNVS 409
P P V + P S+VS
Sbjct: 318 L---PAPGYKV-GKLPFSHVS 334
>gi|448424074|ref|ZP_21582200.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum terrestre
JCM 10247]
gi|445682739|gb|ELZ35152.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum terrestre
JCM 10247]
Length = 309
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 153/297 (51%), Gaps = 13/297 (4%)
Query: 91 LMELIESF----EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
L++ +++F ++P P +RTN + + + GV +P+ W GL
Sbjct: 10 LVDDVDAFRAACDRPLPSVVRTNEIAATPARVREAFDEAGVAYEPVD-WHD-GLFRLPDG 67
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
P G P Y+ G+ Q S LP +AL P+ ERV D AAPG KTT IA M + G +
Sbjct: 68 NPGGNWP-YVHGWTHGQEEVSVLPTLALDPRPGERVWDACAAPGSKTTQIADAMDDEGTV 126
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVI 265
AN+ RL +L N R+G+TN IV N D N K L + DR L+DAPCS G
Sbjct: 127 VANDNNLGRLSALRHNAERLGITNAIVTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTC 186
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
K+ V +L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D
Sbjct: 187 RKNPDVLDQWTLDHVHAVAGIQKGVLARAVQA----TRPGGVVVYSTCTFAPEENEAVLD 242
Query: 326 YALKKRDVKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ L + D +LV L G ++ + S+ + +R YPH ++ GFF AKL+
Sbjct: 243 HVLDEADCELVEFDLPLDTDPGVTQWNGETYDESVTRAKRVYPHRNDTGGFFCAKLR 299
>gi|375265555|ref|YP_005022998.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. EJY3]
gi|369840876|gb|AEX22020.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. EJY3]
Length = 478
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 157/302 (51%), Gaps = 26/302 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ + S +KP +R NTLK +G L P+ W + G + +SQVP+G
Sbjct: 27 DFVSSCQKPLRKSIRVNTLKISVEAFIQRAEEKGWKLSPVP-WCESGFWIDADESQVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL + ++D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNNEAYHAILDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTLRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + S + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWSQQSVLDIADTQKDLIESAFHAL----KPGGVLVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSL-----EKTRRFYPHVHNMDGFFVAKLKKM 383
K FG E+ F + + +P V++ +GFFVA+++K
Sbjct: 260 KNT----------FGDAVEFESLENLFEDAKAALTEDGFLHIFPQVYDCEGFFVARIRKH 309
Query: 384 SN 385
++
Sbjct: 310 AS 311
>gi|293396403|ref|ZP_06640681.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
DSM 4582]
gi|291421192|gb|EFE94443.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
DSM 4582]
Length = 479
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 160/302 (52%), Gaps = 24/302 (7%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQ 146
+ + + I + ++P +R NTLK ++ + L P+ W G + D
Sbjct: 25 LSMEDFIAACQRPLRRSIRVNTLKISVDGFLALVKDYDWQLAPI-PWCAEGFWITRDDDA 83
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+ +G+ E+++G + +Q ASS LPV AL A + RV+D+AAAPG KTT IAALM N G
Sbjct: 84 LRLGSAAEHLSGLFYIQEASSMLPVSALFSAGETPRRVLDVAAAPGSKTTQIAALMNNRG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L ANL R GV N + ++DG L + D +LLDAPCSG GV
Sbjct: 144 GIVANEYSASRVKVLHANLSRCGVKNAALTHFDGRVFGAALP-ESFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD ++ S E + + Q+QLI +A + GG +VYSTC++ EN+ VI
Sbjct: 203 VRKDPDAMSNWSPESVHSIAETQRQLIDSAFHAL----APGGVMVYSTCTLNAQENQQVI 258
Query: 325 DYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSL--EKTRRFYPHVHNMDGFFVAKL 380
+ L V + P G F H +L E +P +++ +GFFVA+L
Sbjct: 259 NSLLANYGSAVSVEPLGDLFPGA----------HQALTDEGFLHVFPQIYDSEGFFVARL 308
Query: 381 KK 382
+K
Sbjct: 309 RK 310
>gi|269962312|ref|ZP_06176663.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3]
gi|269832972|gb|EEZ87080.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3]
Length = 478
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 158/301 (52%), Gaps = 26/301 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W + G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPVP-WCETGFWIDADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL + + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNNESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVIEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPS-----LEKTRRFYPHVHNMDGFFVAKLKKM 383
K+ FG E F + E +P V++ +GFFVA+++K+
Sbjct: 260 KET----------FGDAVEFESLEDLFENAEAALTEEGFLHIFPQVYDCEGFFVARIRKL 309
Query: 384 S 384
+
Sbjct: 310 A 310
>gi|448727730|ref|ZP_21710079.1| RNA methylase, NOL1/NOP2/sun family protein [Halococcus morrhuae
DSM 1307]
gi|445789716|gb|EMA40395.1| RNA methylase, NOL1/NOP2/sun family protein [Halococcus morrhuae
DSM 1307]
Length = 302
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 144/285 (50%), Gaps = 9/285 (3%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAG 158
E+P P +R N +K D L + GV +P+ +W GL+ DS P G T G
Sbjct: 22 ERPLPSVVRVNGIKATPERAMDALDDEGVEYEPV-EWHP-GLLRLDSTSP-GRTWGAYHG 78
Query: 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS 218
+ Q S LP + P ERV AAPGGK T +AAL + G I AN+ RL +
Sbjct: 79 WLHGQEEVSTLPALVCDPDPGERVWAACAAPGGKATQLAALAGDEGTIVANDRSLGRLSA 138
Query: 219 LTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSL 277
L N R+GVT+ V N D N K + DR L+DAPCS G I K+ SL
Sbjct: 139 LRFNAERLGVTSMAVTNRDARNYSLKPFDFDAFDRALVDAPCSCEGTIRKNPDALDEWSL 198
Query: 278 EDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337
E I + Q+ ++ A+ ++SGG +VYSTC+ ENEAV+D L D +LV
Sbjct: 199 EYIDSIAATQESILRRAVQA----TRSGGSVVYSTCTFAPEENEAVLDSVLSAEDCRLVE 254
Query: 338 CGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
D R G ++ F S+ K +R YPH+++ GFF AK++
Sbjct: 255 FSCDLETRPGVTEWQGEAFDESVRKAKRIYPHLNDTGGFFCAKVE 299
>gi|432371973|ref|ZP_19615023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE11]
gi|430898302|gb|ELC20437.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE11]
Length = 493
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 160/298 (53%), Gaps = 23/298 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W K G + + +P+
Sbjct: 42 DFLAACQRPLRRSIRVNTLKISVADFLQLTEPYGWTLTPV-PWCKEGFWIERDDEEALPL 100
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+D+AAAPG KTT IAA M N G I
Sbjct: 101 GSTAEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAASMNNEGAIL 160
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 161 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 219
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q++LI +A + + GG +VYSTC++ ENEAV +
Sbjct: 220 DPDALKNWSPESNLEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNRDENEAVCLW- 274
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
LK+ V+ +P G F E H +P +++ +GFFVA+L+K
Sbjct: 275 LKETYPDAVEFLPLGDLFPDAKKALTEEGFLH--------VFPQIYDCEGFFVARLRK 324
>gi|401675923|ref|ZP_10807910.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp.
SST3]
gi|400216967|gb|EJO47866.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp.
SST3]
Length = 465
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 161/301 (53%), Gaps = 21/301 (6%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DS 145
+ L + I + ++P +R NTLK D ++ L P+ W GL + +
Sbjct: 9 LSLDDFIAACQRPLRRSIRVNTLKISVEDFLALVAPYSWQLTPV-PWCAEGLWIERDDED 67
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G+T E+++G + +Q ASS LPV AL ERV+D+AAAPG KTT IAA M N
Sbjct: 68 AVPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMGNR 127
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG G
Sbjct: 128 GAILANEFSASRVKVLHANISRCGIHNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEG 186
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
V+ KD + S+E + + Q++LI +A + + GG +VYSTC++ ENE V
Sbjct: 187 VVRKDPDALKNWSVESNLEIAATQRELIESAFHAL----RPGGTLVYSTCTLNRDENEGV 242
Query: 324 IDY--ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ A V+ +P FV +E + E +P +++ +GFFVA+L+
Sbjct: 243 CLWLKAQYPDAVEFLPL-----NDLFVSAQEAI---TPEGFLHVFPQIYDCEGFFVARLR 294
Query: 382 K 382
K
Sbjct: 295 K 295
>gi|336311765|ref|ZP_08566725.1| tRNA/RNA cytosine-C5-methylase [Shewanella sp. HN-41]
gi|335864712|gb|EGM69787.1| tRNA/RNA cytosine-C5-methylase [Shewanella sp. HN-41]
Length = 486
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 175/346 (50%), Gaps = 29/346 (8%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I + + P + + E I + ++P +R NTLK D ++ +G DP+
Sbjct: 5 NQNFIDTITQELPAHLSMDEFIAACDRPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPIP 64
Query: 134 KWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL-------APQEKERVIDM 185
W G + YD + +G E++ G + +Q ASS LP AL + + V+D+
Sbjct: 65 -WCADGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQSVLDL 123
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APG KTT IAALM N GL+ ANE ASR+K L AN+ RMGV++ + ++DG + L
Sbjct: 124 ASAPGSKTTQIAALMHNQGLLVANEYSASRVKVLHANVLRMGVSHCALTHFDGRVFGEYL 183
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
+ D VL+DAPC G G + KD SL+D+ S QK LI +A + K G
Sbjct: 184 -YESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLAL----KPG 238
Query: 306 GYIVYSTCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
G +VYSTC++ EN+ V +Y LK+ D D F + E
Sbjct: 239 GSLVYSTCTLNRLENQGVCEY-LKRVYGDAVQFESLSDL-------FDGAERATTTEGFL 290
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVS 409
+P +++ +GFFVAKL K ++ + QP +++ P + S
Sbjct: 291 HVWPQIYDSEGFFVAKLTKTASVPRL----QPEPKLQKNFPFTPAS 332
>gi|448478964|ref|ZP_21603970.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum arcis JCM
13916]
gi|445822794|gb|EMA72556.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum arcis JCM
13916]
Length = 309
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 153/297 (51%), Gaps = 13/297 (4%)
Query: 91 LMELIESF----EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
L++ +++F ++P P +RTN + + + GV +P+ W GL
Sbjct: 10 LVDDVDAFRAACDRPLPSVVRTNEIAATPGRVREAFDEAGVAYEPVD-WHD-GLFRLPDG 67
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
P G P Y+ G+ Q S LP +AL P+ ERV D AAPG KTT IA M + G +
Sbjct: 68 NPGGNWP-YVHGWTHGQEEVSVLPTLALDPRPGERVWDACAAPGSKTTQIADAMDDEGTV 126
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVI 265
AN+ RL +L N R+G+TN IV N D N K L + DR L+DAPCS G
Sbjct: 127 VANDNNLGRLSALRHNAERLGITNAIVTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTC 186
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
K+ V +L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D
Sbjct: 187 RKNPDVLDQWTLDHVHAVAGIQKGVLARAVQA----TRPGGVVVYSTCTFAPEENEAVLD 242
Query: 326 YALKKRDVKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ L + D +LV L G ++ + S+ + +R YPH ++ GFF AKL+
Sbjct: 243 HVLDEEDCELVEFDLPLDTDPGVTQWDGEAYDESVTRAKRVYPHRNDTGGFFCAKLR 299
>gi|336122548|ref|YP_004577323.1| RNA methylase, NOL1/NOP2/sun family [Methanothermococcus
okinawensis IH1]
gi|334857069|gb|AEH07545.1| RNA methylase, NOL1/NOP2/sun family [Methanothermococcus
okinawensis IH1]
Length = 277
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 146/235 (62%), Gaps = 13/235 (5%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLKT ++L D L N+ V L+ + V + +GATPEY+ G+Y LQS
Sbjct: 18 IRVNTLKTTPKELKDRLKNKEVKLE--DTFLDYMFKVKGAPFSMGATPEYLFGYYYLQSI 75
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P E + V+DM +APGGKTT+++ LM N G+I ANE+ R++SL +N++R
Sbjct: 76 SSTIPALVLNPYENDVVLDMCSAPGGKTTHLSQLMNNKGVIIANEINRKRMRSLKSNIYR 135
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
MG+ NTI+ N D L K L D++LLDAPC+G + K+ V S DI+ C+
Sbjct: 136 MGIVNTILLNMDALRLKKFNML--FDKILLDAPCTGNPIKDKNRVV----SKRDIRYCAL 189
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK-KRDVKLVPCG 339
QK ++ IDM+ K GG IVYSTCS + ENE VI+Y L +RDV+L+ G
Sbjct: 190 RQKNMLNVGIDML----KEGGEIVYSTCSPEIEENEEVIEYILNTRRDVELIDIG 240
>gi|14600772|ref|NP_147293.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
gi|5104163|dbj|BAA79479.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
Length = 352
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 161/311 (51%), Gaps = 6/311 (1%)
Query: 73 GYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
GY+ L+ +++ E ELI +KP P +R N +L +L +G + +
Sbjct: 45 GYSPVLVEKYIQILGEEEARELIAWNDKPLPETIRCNDFLIPCSELESMLSQKGFLVSRI 104
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
W G+ V + + +GAT EYM G Y +Q S L L + E V+DMAAAPGGK
Sbjct: 105 -PWLPHGIEVLEQPIRVGATHEYMQGLYYIQDPGSMLVAYLLGVEPGETVLDMAAAPGGK 163
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
+T+I L +++ ++ A ++ R+++L +++ RMG + + D LP++ G DR
Sbjct: 164 STHIQQLSRDSTILVAVDISRRRMRALRSHMQRMGFRSYVAVRADSRLLPRIAGTGWADR 223
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
V+LDAP +G G+I KD + S+S D+ + YLQ +L+ A+D+ ++ G I+Y+
Sbjct: 224 VMLDAPSTGEGIIRKDPERRRSRSQADVLRIHYLQLELLYTAVDL----ARPGAPILYAA 279
Query: 313 CSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
CS E E V+ L+ R DV++ G G + + R +P H
Sbjct: 280 CSTSPEEGELVVSRLLELRSDVEVERLESPVGSPGVDSYLGVDISGEARRCLRLWPQRHG 339
Query: 372 MDGFFVAKLKK 382
+GFF+ ++++
Sbjct: 340 TEGFFICRVRR 350
>gi|218709402|ref|YP_002417023.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
LGP32]
gi|254766870|sp|B7VNJ8.1|RSMF_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218322421|emb|CAV18574.1| NOL1/NOP2/sun family protein [Vibrio splendidus LGP32]
Length = 473
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 163/319 (51%), Gaps = 26/319 (8%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M +++ + S +KP +R NTLK D +G L+P+ W
Sbjct: 10 EFLTHIESIMPSHLDMASFVASCQKPLRKSIRVNTLKISVEDFLVRAKEKGWELEPVP-W 68
Query: 136 SKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGG 191
+ G + +S+ P+G T E+M+G + +Q ASS +P AL E + V+D AAAPG
Sbjct: 69 CETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEADYQAVLDTAAAPGS 128
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT IAALM N G++ ANE ASR+K L AN+ R GV N + N+DG L D
Sbjct: 129 KTTQIAALMNNRGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFD 187
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
VLLDAPCSG G I KD + + + + + QK LI +A + N G +VYS
Sbjct: 188 AVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKPN----GVLVYS 243
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR-----RFY 366
TC++ EN+ V + LK+ FG E F + T +
Sbjct: 244 TCTLSTEENQQVCHH-LKET----------FGDAVEFESLESLFDNAKATTTEEGFLHIF 292
Query: 367 PHVHNMDGFFVAKLKKMSN 385
P V++ +GFFVA+++K+++
Sbjct: 293 PQVYDSEGFFVARIRKLAS 311
>gi|424045800|ref|ZP_17783364.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-03]
gi|408885895|gb|EKM24600.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-03]
Length = 478
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 156/298 (52%), Gaps = 20/298 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ + S +KP +R NTLK + +G L P+ W + G + +S VP+G
Sbjct: 27 DFVASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPVP-WCETGFWIDADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL + + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNNESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVIEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
K+ D D E F +P V++ +GFFVA+++K++
Sbjct: 260 KETFGDAVEFESLKDLFENAEAALTEEGF-------LHIFPQVYDCEGFFVARIRKLA 310
>gi|401764178|ref|YP_006579185.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ENHKU01]
gi|400175712|gb|AFP70561.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ENHKU01]
Length = 480
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 185/390 (47%), Gaps = 41/390 (10%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DS 145
+ L + I + ++P +R NTLK D ++ L P+ W G + +
Sbjct: 24 LSLDDFIAACQRPLRRSIRVNTLKISVDDFLTLVSPYNWQLTPV-PWCAEGFWIERDDED 82
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNT 203
VP+G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N
Sbjct: 83 AVPLGSTAEHLSGLFYIQEASSMLPVAALFAEGNAPERVMDVAAAPGSKTTQIAARMGNH 142
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG G
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIQNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEG 201
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
V+ KD + S+E + + Q++LI +A + + GG +VYSTC++ ENE V
Sbjct: 202 VVRKDPDALKNWSVESNLEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNRDENEDV 257
Query: 324 IDY--ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ A V+ +P F E H +P +++ +GFFVA+L+
Sbjct: 258 CLWLKAQYPDAVEFLPLNDLFATADEAATPEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGL 441
K + P P+ P+ V N + + V +K A K GL
Sbjct: 310 KTQ-----AVAPLPA-------PKFKVGNFPFAPLKGRDAVQLKAAANKV--------GL 349
Query: 442 AENGNVESPSNEKRRKKRKFPSREEISKVR 471
+ N+ +K P I KVR
Sbjct: 350 IWDENLHLWMRDKEIWLFPAPIEPLIGKVR 379
>gi|261252942|ref|ZP_05945515.1| ribosomal RNA small subunit methyltransferase F [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417953608|ref|ZP_12596652.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260936333|gb|EEX92322.1| ribosomal RNA small subunit methyltransferase F [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342816964|gb|EGU51854.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 474
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 161/295 (54%), Gaps = 17/295 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK ++G L+P+ W + G + +SQVP+G
Sbjct: 27 DFIAACQRPLRKSIRVNTLKISIDAFLTRAKSKGWQLEPVP-WCEEGFWIEADESQVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKE---RVIDMAAAPGGKTTYIAALMKNTGLIY 207
T E+M+G + +Q ASS +PV AL + + V+DMAAAPG KTT IAA M+N G++
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVAALFDNQGDDFTSVLDMAAAPGSKTTQIAAKMENAGVLV 145
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R GV NT + NYDG L + VL+DAPCSG G + K
Sbjct: 146 ANEFSASRVKVLHANIERCGVRNTALSNYDGRVFGGWLP-EQFNAVLIDAPCSGEGTVRK 204
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + + E + + QK LI +A + N G +VYSTC++ V EN+ V +
Sbjct: 205 DADAMKNWNKESVLSIAETQKDLIESAFHALKPN----GVMVYSTCTLSVEENQQVCLH- 259
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
LK+ LV +F + F + E +P V++ +GFFVAK++K
Sbjct: 260 LKETFGDLV----EFESLADL-FTGAEKSLTEEGFLHIFPQVYDCEGFFVAKIRK 309
>gi|84394273|ref|ZP_00992999.1| Sun/nucleolar protein family protein [Vibrio splendidus 12B01]
gi|84375112|gb|EAP92033.1| Sun/nucleolar protein family protein [Vibrio splendidus 12B01]
Length = 473
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 163/319 (51%), Gaps = 26/319 (8%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M +++ + S +KP +R NTLK D +G L+P+ W
Sbjct: 10 EFLTHIEAIMPSHLDMASFVASCQKPLRKSIRVNTLKISVEDFLVRAKEKGWELEPVP-W 68
Query: 136 SKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE--KERVIDMAAAPGG 191
+ G + +S+ P+G T E+M+G + +Q ASS +P AL E + V+D AAAPG
Sbjct: 69 CETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEVDYQAVLDTAAAPGS 128
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT IAALM N G++ ANE ASR+K L AN+ R GV N + N+DG L D
Sbjct: 129 KTTQIAALMNNRGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFD 187
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
VLLDAPCSG G I KD + + + + + QK LI +A + N G +VYS
Sbjct: 188 AVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKPN----GVLVYS 243
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR-----RFY 366
TC++ EN+ V + LK+ FG E F + T +
Sbjct: 244 TCTLSTEENQQVCHH-LKET----------FGDAVEFESLESLFDNAKATTTEEGFLHIF 292
Query: 367 PHVHNMDGFFVAKLKKMSN 385
P V++ +GFFVA+++K+++
Sbjct: 293 PQVYDSEGFFVARIRKLAS 311
>gi|302347987|ref|YP_003815625.1| RNA (cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
345-15]
gi|302328399|gb|ADL18594.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
345-15]
Length = 335
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 166/319 (52%), Gaps = 14/319 (4%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L YGY +++ +E+ E +L+E+ E P P LR N K +L L G
Sbjct: 27 LAQKYGYLPYIVERYLELLGD-EAEDLLEANEVPMPETLRCNDFKISCGELESRLGEAGF 85
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
L+ + + G V S + GAT EY+ G+Y LQ S L V + P+ ++DMAA
Sbjct: 86 ELERVP-FLPHGYHVISSPISPGATHEYLKGYYYLQDPGSMLIVYVMNPRPSATILDMAA 144
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGK+T I L +++ L+ A E K R+K+L +NL RMG +N I+ D + L L
Sbjct: 145 APGGKSTQILQLTRDSSLLIAVEPKRERIKALRSNLQRMGFSNYILIRSDA----RFLSL 200
Query: 248 NT-VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306
+T +VLLDAP SG G+I KD++ KT S+ D+++ LQ +L+ A+ +V GG
Sbjct: 201 DTKPAQVLLDAPSSGEGIIRKDKNRKTKTSISDLRRIHELQVELLNRALSIV----SPGG 256
Query: 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLV--PCGLDFGRQGFVRFREHRFHPSLEKTRR 364
+ Y+ CS V E E + L +D P G + F +R F ++ R
Sbjct: 257 TVTYAACSTAVEEGEYTVHKVLADKDYVTTERPFGFPLSKP-FEEYRGVIFDDRVKGCGR 315
Query: 365 FYPHVHNMDGFFVAKLKKM 383
+PH +GFF+ KL+++
Sbjct: 316 LFPHKQGTEGFFICKLRRL 334
>gi|365971053|ref|YP_004952614.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
cloacae EcWSU1]
gi|365749966|gb|AEW74193.1| Ribosomal RNA small subunit methyltransferase F [Enterobacter
cloacae EcWSU1]
Length = 482
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 164/306 (53%), Gaps = 31/306 (10%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DS 145
+ L + I + ++P +R NTLK D ++ L P+ W G + ++
Sbjct: 26 LSLDDFIAACQRPLRRSIRVNTLKISVVDFLTLVSPYNWQLTPV-PWCAEGFWIERDDEA 84
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNT 203
+P+G+T E+++G + +Q ASS LPV AL + ERV+D+AAAPG KTT IAA M N
Sbjct: 85 SLPLGSTAEHLSGLFYIQEASSMLPVAALFADDNTPERVMDVAAAPGSKTTQIAARMGNR 144
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN----ELPKVLGLNTVDRVLLDAPC 259
G I ANE ASR+K L AN+ R G+ N + ++DG LP+V D +LLDAPC
Sbjct: 145 GAILANEFSASRVKVLHANISRCGIHNVALTHFDGRVFGAALPEVF-----DAILLDAPC 199
Query: 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
SG GV+ KD + S+E + + Q++LI +A + + GG +VYSTC++ E
Sbjct: 200 SGEGVVRKDPDALKNWSVESNLEIAATQRELIASAFHAL----RPGGTLVYSTCTLNRDE 255
Query: 320 NEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFF 376
NE V + LK + V+ +P F E H +P +++ +GFF
Sbjct: 256 NEDVCLW-LKTQYPDAVEFLPLNGLFASANEAVTPEGFLH--------VFPQIYDCEGFF 306
Query: 377 VAKLKK 382
VA+L+K
Sbjct: 307 VARLRK 312
>gi|260778560|ref|ZP_05887452.1| ribosomal RNA small subunit methyltransferase F [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604724|gb|EEX31019.1| ribosomal RNA small subunit methyltransferase F [Vibrio
coralliilyticus ATCC BAA-450]
Length = 463
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 163/301 (54%), Gaps = 19/301 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ + + ++P +R NTLK + +G L P+ W + G + +S+ P+G
Sbjct: 16 DFVAACQRPLRKSIRVNTLKISISEFTQRAQEKGWQLSPVP-WCEEGFWIEADESETPLG 74
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKE---RVIDMAAAPGGKTTYIAALMKNTGLIY 207
T E+M+G + +Q ASS +PV AL + + V+DMAAAPG KTT IAA M N G++
Sbjct: 75 NTAEHMSGLFYIQEASSMMPVSALFQDQNDDFLSVLDMAAAPGSKTTQIAAEMDNLGVLV 134
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE +SR+K L AN+ R GV N + NYDG L D VL+DAPCSG G + K
Sbjct: 135 ANEFSSSRVKVLHANIERCGVRNAALSNYDGRVFGGWLP-EQFDAVLIDAPCSGEGTVRK 193
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S + + + QK LI +A + K GG +VYSTC++ + EN+ V +
Sbjct: 194 DADAMKNWSKDSVLSIADTQKDLIESAFYAL----KPGGVMVYSTCTLSIEENQQVCLH- 248
Query: 328 LKKRDVKLVPC-GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
LK++ LV LD F E + E +P +++ +GFFVA++KK+ ++
Sbjct: 249 LKEQFGDLVEFEPLD------SLFPESEKALTEEGFLHIFPQMYDCEGFFVARMKKLGST 302
Query: 387 K 387
+
Sbjct: 303 E 303
>gi|403058348|ref|YP_006646565.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402805674|gb|AFR03312.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 458
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 163/298 (54%), Gaps = 17/298 (5%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ---VPI 149
+ I + ++P +R NTLK +++ G L+P+ W + G + +++ +
Sbjct: 3 DFIAACQRPLRRSIRVNTLKISVDAFLELVQPYGWQLEPI-PWCQEGFWLLNAEEENTRL 61
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQE--KERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G T E+++G + +Q ASS LPV AL + +E V+D+AAAPG KTT IAA + N G I
Sbjct: 62 GNTLEHLSGLFYIQEASSMLPVSALFHRNDAQETVLDVAAAPGSKTTQIAARLNNEGAIV 121
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R GV+NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 122 ANEYSASRVKVLHANISRCGVSNTAITHFDGRVFGAALP-EYFDAILLDAPCSGEGVVRK 180
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + + S E I + Q+ LIL+A + K GG ++YSTC++ EN+ V +
Sbjct: 181 DPAAMSHWSQESITDIAATQRDLILSAFHAL----KPGGVMIYSTCTLNKQENQQVCHWL 236
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+ P +F + F + + E +P +++ +GFFVA+L+K ++
Sbjct: 237 QTQ-----FPDACEFESLHDL-FTDAECATTEEGFLHVFPQIYDSEGFFVARLRKTAS 288
>gi|170726339|ref|YP_001760365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella woodyi
ATCC 51908]
gi|254766869|sp|B1KQN1.1|RSMF_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|169811686|gb|ACA86270.1| RNA methylase, NOL1/NOP2/sun family [Shewanella woodyi ATCC 51908]
Length = 478
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 175/325 (53%), Gaps = 16/325 (4%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I ++ + P + + + I KP +R NTLK + ++ +G LDP+
Sbjct: 5 NQDFINSIAKDMPAHLTMDDFISYSSKPLRPSIRINTLKISSDEFVTLMAAKGWTLDPIP 64
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP----QEKERVIDMAAAP 189
S V D+++ +G T E++ G + +Q ASS LP AL + ++DMA+AP
Sbjct: 65 WCSDGFWVALDNEIQLGNTIEHIQGLFYIQEASSMLPPTALFDGLDNSSEYTILDMASAP 124
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT +A+LM N GL+ ANE +SR+K L AN+ RMGV NT + ++D + L +
Sbjct: 125 GSKTTQMASLMDNKGLLVANEYSSSRVKVLHANVQRMGVYNTALTHFDARVFGEYL-YHQ 183
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D +LLDAPCSG G I KD + SLE+ QK LI +A + K+GG +V
Sbjct: 184 FDAILLDAPCSGEGTIRKDPLALRNWSLEENASIIETQKALIESAFLAL----KTGGSLV 239
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTC++ +EN+ V ++ + P ++F + F + + E +P +
Sbjct: 240 YSTCALSRSENQEVCEHLM-----SCFPQAVEFQSLSEL-FPDADKSCTSEGFLHVWPQI 293
Query: 370 HNMDGFFVAKLKKMSNSKKTSAGPQ 394
++ +GFF+AK++K+++ ++ P+
Sbjct: 294 YDSEGFFIAKVRKVADVERQKPLPK 318
>gi|313126366|ref|YP_004036636.1| nol1/nop2/sun family RNA methylase [Halogeometricum borinquense DSM
11551]
gi|448286208|ref|ZP_21477443.1| nol1/nop2/sun family RNA methylase [Halogeometricum borinquense DSM
11551]
gi|312292731|gb|ADQ67191.1| NOL1/NOP2/sun family putative RNA methylase [Halogeometricum
borinquense DSM 11551]
gi|445575259|gb|ELY29738.1| nol1/nop2/sun family RNA methylase [Halogeometricum borinquense DSM
11551]
Length = 312
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 150/300 (50%), Gaps = 19/300 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ ++P P +R NT+KT L V +P + W G++ D + P G T
Sbjct: 17 FFAACDRPLPSVVRVNTIKTTVDRARSALDAENVGYEP-TDWHP-GILKLDERGP-GTTW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S LP +AL P+ E V D AAPG KTT +A LM +TG++ N+
Sbjct: 74 PYFHGWLHGQEEVSALPALALDPEPGEIVWDACAAPGSKTTQLADLMDDTGVLIGNDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---------GNELPKVLGLNTVDRVLLDAPCSGTGV 264
RL +L N R+GV+N +V N D G + ++ D+ L+DAPCS G
Sbjct: 134 GRLSALRHNAERLGVSNLVVTNQDARNYSLKPFGEDTDDSAAIDAFDKALVDAPCSCEGT 193
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
I K+ ++ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+
Sbjct: 194 IRKNPDALDRWTMNHVHSVAGIQKGILRRAVQA----TRPGGTVVYSTCTFAPEENEAVL 249
Query: 325 DYALKKRDVKLVPCGLDFGRQ---GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
D+ L + D KLVP + G + + + PS+E R YPH ++ GFF AKL+
Sbjct: 250 DHVLGEEDCKLVPWDAPDNFETAPGVTEWEDEEYDPSVELAHRVYPHHNDTGGFFCAKLE 309
>gi|440230611|ref|YP_007344404.1| 16S rRNA m(5)C-1407 methyltransferase [Serratia marcescens FGI94]
gi|440052316|gb|AGB82219.1| 16S rRNA m(5)C-1407 methyltransferase [Serratia marcescens FGI94]
Length = 479
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 157/303 (51%), Gaps = 22/303 (7%)
Query: 88 PVELM--ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-- 143
P EL + I + ++P LR NTLK D + L+P+ W G +
Sbjct: 22 PAELSMDDFIAACQRPLRRSLRVNTLKISVADFLARVKEYDWQLEPI-PWCAEGFWIARD 80
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMK 201
D + +G+ E+++G + +Q ASS LPV AL RV+D+AAAPG KTT IAALM
Sbjct: 81 DESLRLGSAAEHLSGLFYIQEASSMLPVSALFAGGDAPTRVLDVAAAPGSKTTQIAALMH 140
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
N G I ANE ASR+K L AN+ R GV+N + ++DG L D +LLDAPCSG
Sbjct: 141 NQGGIVANEYAASRVKVLHANISRCGVSNCALTHFDGRVFGAALP-EAFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD ++ S E + + Q++LI +A + GG +VYSTC++ EN+
Sbjct: 200 EGVVRKDPDAMSNWSPESVTSIADTQRELIDSAFHAL----APGGMLVYSTCTLNEQENQ 255
Query: 322 AVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
AVI L V + P G F E H +P +++ +GFFVA+
Sbjct: 256 AVIRSLLASYGDAVSIEPLGELFPDAQRALTAEGFLH--------VFPQIYDSEGFFVAR 307
Query: 380 LKK 382
L+K
Sbjct: 308 LRK 310
>gi|262394196|ref|YP_003286050.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. Ex25]
gi|262337790|gb|ACY51585.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. Ex25]
Length = 478
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 157/301 (52%), Gaps = 26/301 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVEAFLERADAKGWKLSPVP-WCDTGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANVERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVLDIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHP-----SLEKTRRFYPHVHNMDGFFVAKLKKM 383
K+ FG E F + E +P V++ +GFFVA+++K+
Sbjct: 260 KET----------FGDAVEFESLETLFENANAALTEEGFLHIFPQVYDCEGFFVARIRKL 309
Query: 384 S 384
+
Sbjct: 310 A 310
>gi|442611403|ref|ZP_21026109.1| Ribosomal RNA small subunit methyltransferase F [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747331|emb|CCQ12171.1| Ribosomal RNA small subunit methyltransferase F [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 478
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 165/304 (54%), Gaps = 19/304 (6%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY----- 143
++L E + + ++P +R NTLK + NR + P+ W G +
Sbjct: 23 LKLEEFVAACKRPLRRSVRVNTLKMSVERFMEECRNRDWEIHPIP-WCNEGFWLSRPSTE 81
Query: 144 DSQVPIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMK 201
+ +PIG T +++G +Q ASS LP AL + + V+D+AAAPG KTT IAA M
Sbjct: 82 EETLPIGNTDLHLSGCIYVQEASSMLPPEALFQDLSKGQIVLDIAAAPGSKTTQIAAYMN 141
Query: 202 NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
NTG++ ANE +SR+K L ANL RMGV+NT++ +++GN + D +LLDAPCSG
Sbjct: 142 NTGVLVANEYSSSRVKVLVANLKRMGVSNTLISHFNGNVFGDYMA-ECFDHILLDAPCSG 200
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
G + KDE + S+E ++ + +QK+LI++A + K GG +VYSTC++ EN
Sbjct: 201 EGTVRKDEFALKNWSIESNREIACVQKELIVSAFQAL----KVGGSLVYSTCTLTPLENH 256
Query: 322 AVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
V + + + L+ F E + + E +P +++ +GFF+A+ K
Sbjct: 257 HVCQHLIDLYGDAVEIVSLE------NLFDEAKRSLTTEGFLHVWPQIYDSEGFFIARFK 310
Query: 382 KMSN 385
K S+
Sbjct: 311 KRSS 314
>gi|163800839|ref|ZP_02194739.1| Sun/nucleolar protein family protein [Vibrio sp. AND4]
gi|159175188|gb|EDP59985.1| Sun/nucleolar protein family protein [Vibrio sp. AND4]
Length = 478
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 160/303 (52%), Gaps = 30/303 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W + G + +S VP+G
Sbjct: 27 DFIASCQKPLRKSIRVNTLKISVDAFLERADAKGWKLSPVP-WCETGFWIEADESVVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL + + V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFMTNETFDSVLDTAAAPGSKTTQIAALMNNEGILVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWTQASVIEIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHR-----FHPSL--EKTRRFYPHVHNMDGFFVAKLK 381
K+ FG V F + SL E +P V++ +GFFVA+++
Sbjct: 260 KET----------FGDA--VEFESLKDLFENAETSLTDEGFLHIFPQVYDCEGFFVARIR 307
Query: 382 KMS 384
K++
Sbjct: 308 KLT 310
>gi|300717051|ref|YP_003741854.1| ribosomal RNA small subunit methyltransferase F [Erwinia billingiae
Eb661]
gi|299062887|emb|CAX60007.1| ribosomal RNA small subunit methyltransferase F [Erwinia billingiae
Eb661]
Length = 478
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 164/314 (52%), Gaps = 30/314 (9%)
Query: 84 EMFPPV-ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV 142
E+ P V E I ++P LR NTLK D ++ L P+ W + G +
Sbjct: 19 ELLPDVAEFERFIAISQQPLRRSLRVNTLKISVADFLALVAPYQWQLTPI-PWCEEGFWI 77
Query: 143 Y---DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIA 197
+P+G+T E+++G + +Q ASS LPV AL E V+D+AAAPG KTT IA
Sbjct: 78 SRDDADTLPLGSTAEHLSGLFYIQEASSMLPVSALFAGCPTPETVMDVAAAPGSKTTQIA 137
Query: 198 ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN----ELPKVLGLNTVDRV 253
A M N G I ANE ASR+K L ANL R GV+NT + ++DG LP++ D +
Sbjct: 138 AKMGNQGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDGRVFGAALPEIF-----DAI 192
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSG GVI KD + S+E + + Q LI +A + K GG ++YSTC
Sbjct: 193 LLDAPCSGEGVIRKDADALRNWSVESTAEIAATQHDLIDSAFHAL----KPGGTLIYSTC 248
Query: 314 SIMVTENEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
++ EN+ VI + ++ V++ P F E P E +P + +
Sbjct: 249 TLNRAENQQVIAWLQQQYPGAVEIEPLNELFPGA------EQAVTP--EGFLHVFPQIFD 300
Query: 372 MDGFFVAKLKKMSN 385
+GFFVA+L+K+ +
Sbjct: 301 SEGFFVARLRKLES 314
>gi|409728290|ref|ZP_11271157.1| RNA methylase [Halococcus hamelinensis 100A6]
gi|448721863|ref|ZP_21704406.1| RNA methylase [Halococcus hamelinensis 100A6]
gi|445790935|gb|EMA41585.1| RNA methylase [Halococcus hamelinensis 100A6]
Length = 302
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 147/298 (49%), Gaps = 18/298 (6%)
Query: 94 LIESFEKPRPIC-------LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
+I+ F R C R NT+KT + L GV + +W + GLV D
Sbjct: 10 IIDDFAAFRAACERPLGHVARVNTIKTSVERAKEALDEEGVEFES-CEW-QPGLVKLDGT 67
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
G T G+ Q S LP P+ ERV AAPGGK T +AAL + GL+
Sbjct: 68 T-TGRTWGAFHGWLHGQEEVSALPATVCDPKPGERVFAACAAPGGKATQLAALADDRGLV 126
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD-GNELPKVLGLNTVDRVLLDAPCSGTGVI 265
AN+ RL +L N R+GVT+ V N D GN DR L+D PCS G I
Sbjct: 127 VANDRNLGRLSALRFNAERLGVTSMAVTNRDAGNYSLAPFDFEAFDRALVDVPCSCEGTI 186
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
K+ S + I+ + QK ++ A+ +K+GG +VYSTC+ ENEAV+D
Sbjct: 187 RKNPDALDEWSRQRIESIAGTQKSILRRAVQA----TKTGGTVVYSTCTFAPEENEAVLD 242
Query: 326 YALKKRDVKLV--PCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
L+ D +LV CGL+ R G + + RF P +E +R YPH+++ GFF AKL+
Sbjct: 243 AVLESEDCRLVEFECGLE-TRPGITEWEDDRFDPGVEHAKRVYPHLNDTGGFFCAKLE 299
>gi|91793400|ref|YP_563051.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
denitrificans OS217]
gi|123356754|sp|Q12MJ8.1|RSMF_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|91715402|gb|ABE55328.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella
denitrificans OS217]
Length = 505
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 164/314 (52%), Gaps = 29/314 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
E I + +P +R NTL+ D ++ RG + P+ W G + +D Q +
Sbjct: 24 EFILACNRPLRQSIRVNTLRISSEDFIALMTPRGWSFSPV-PWCSDGFWITLTHDEQ--L 80
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKE------RVIDMAAAPGGKTTYIAALMKNT 203
G E++ G + +Q ASS LP AL + RV+DMA+APG KTT +AALM N
Sbjct: 81 GNCLEHIQGLFYIQEASSMLPPTALFTNDDADERAPLRVLDMASAPGSKTTQMAALMNNN 140
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG---LNTVDRVLLDAPCS 260
GL+ ANE ASR+K L AN+ RMGV+N + ++DG +V G D VLLDAPC
Sbjct: 141 GLLIANEYSASRVKVLHANVLRMGVSNCALTHFDG----RVFGEYQYEAFDAVLLDAPCG 196
Query: 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320
G G + KD++ L+D+ + QK LI AA + K GG +VYSTC++ EN
Sbjct: 197 GEGTVRKDQNALKEWQLDDVIAIADTQKDLIEAAFLAL----KPGGALVYSTCTLSQLEN 252
Query: 321 EAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+A+ + L + P + F + F + E +P +++ +GFFVAK+
Sbjct: 253 QAICQHLLSR-----YPEAVAFESLATL-FDGAAKACTEEGFLHVWPQIYDSEGFFVAKM 306
Query: 381 KKMSNSKKTSAGPQ 394
+K ++ + + P+
Sbjct: 307 RKTASVPRIKSQPK 320
>gi|421861486|ref|ZP_16293488.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
gi|410828912|dbj|GAC43925.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
Length = 476
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 144/300 (48%), Gaps = 32/300 (10%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++S+++PR LR K R A L+P+ W G +S P G P
Sbjct: 31 FLDSYKEPRTYGLRVQPGKWSRHKTARRNAAALFALEPVP-WCSEGYYYEESARP-GKHP 88
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
+ G Y +Q S+ L PQ E V+D+AAAPGGK T IA MK GL+ ANE+
Sbjct: 89 YHHTGLYYIQEPSAMSAAGLLDPQPGEFVLDLAAAPGGKATQIAGRMKGEGLLIANEIHP 148
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKT 273
R K L N+ RMG+ N IV D + LP+ DR++LDAPCSG G+ KD
Sbjct: 149 QRAKILAENMERMGIVNCIVTQADPHALPERFPYR-FDRIMLDAPCSGEGMFRKDPEAVK 207
Query: 274 SKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-D 332
S E ++ C+ Q+ +I AA+ M+ + GG +VYSTC+ ENE +I Y LK +
Sbjct: 208 EWSPEHVEACALRQQDIIRAAVRML----RPGGSLVYSTCTFNRRENEDIIAYWLKTYPE 263
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAG 392
KLV R +PH H +G FVA LKK + ++ G
Sbjct: 264 FKLV------------------------HMERLWPHRHRGEGHFVALLKKSPAAPDSAVG 299
>gi|254168829|ref|ZP_04875670.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
gi|197622266|gb|EDY34840.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
Length = 301
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 161/294 (54%), Gaps = 19/294 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ES +KP+P +R NTLK R +L + L N+G L+ + ++ + P GAT
Sbjct: 22 FMESLDKPQPYWMRVNTLKIREEELIERLENKGFKLEKYKNLNAYRIIDMPVKHP-GATI 80
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
E+ G+Y +Q SS PV+AL PQ E+++DMAAAPG KTT IA LM+ G I AN++
Sbjct: 81 EHSLGYYYIQDLSSMAPVLALNPQRGEKILDMAAAPGSKTTMIAELMRE-GTIVANDINF 139
Query: 214 SRLKSLTANLHRMGVTNTIVCNYD---GNELPKVLGLNTVDRVLLDAPCSGTGVISKDES 270
+RLKSL NL R+G+TN I+ D GN G+ +++LLDAPCSG G + K+
Sbjct: 140 NRLKSLGGNLERLGITNVIITKKDAKKGN-----FGI-KFNKILLDAPCSGEGTVRKNPW 193
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
+ + + QK ++ A V+ +GG IVYSTC+ ENE V++Y ++
Sbjct: 194 GFRVVGDREHKMLARNQKIMLKNASRHVN----NGGIIVYSTCTFNPWENEGVVEYGIET 249
Query: 331 RDVKLVPCGLDFGRQGFVRFREHRF--HPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+K P D F E R + E +R YPH+ + G F+A LKK
Sbjct: 250 LGLK--PVHFDIPIPHFKGVEEWRGEKYEYGEYYKRIYPHLEDTGGMFIAVLKK 301
>gi|239827028|ref|YP_002949652.1| RNA methylase [Geobacillus sp. WCH70]
gi|239807321|gb|ACS24386.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. WCH70]
Length = 454
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 155/298 (52%), Gaps = 31/298 (10%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LR N LK R ++ L P+ + G YD+ G P + AG Y +Q
Sbjct: 34 LRFNPLKIDRETFLTLV---PFALSPVP-FCPTGFY-YDAHEQPGKHPYHAAGLYYIQEP 88
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
S+ L P E V+D+ AAPGGKTT +AA+MKN GLI ANE+ R+K+L+ N+ R
Sbjct: 89 SAMFVAEVLKPNPGEFVLDLCAAPGGKTTQLAAMMKNQGLIIANEIHPKRVKALSENIER 148
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
G+TN +V N +L K D++L+DAPCSG G+ KDE S +++C+
Sbjct: 149 FGITNALVTNETPEKLAKYFP-GFFDKILVDAPCSGEGMFRKDEEAVQFWSQAHVEQCAI 207
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC----GL 340
Q+ ++ A +M+ K GG +VYSTC+ ENE I+ L+ D++L+ G+
Sbjct: 208 KQRHILDCAYEML----KEGGILVYSTCTFSPEENEQTIEAFLQTYDDLELLSIEKVHGI 263
Query: 341 DFGRQGF--VRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPS 396
GR+ + F E +E+T R +PH +G FVAK+KK GP PS
Sbjct: 264 QPGRREWTNTNFEE------MERTARLWPHSLKGEGHFVAKIKK--------TGPSPS 307
>gi|126466321|ref|YP_001041430.1| ribosomal RNA methyltransferase NOP2 [Staphylothermus marinus F1]
gi|126015144|gb|ABN70522.1| ribosomal RNA methyltransferase NOP2 [Staphylothermus marinus F1]
Length = 344
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 173/322 (53%), Gaps = 12/322 (3%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L S YGY +++ +++ + ++L+ +FEKP +RTNTL L + L G
Sbjct: 28 LASKYGYLPYMVERYIKILGFKDTVDLLNAFEKPLKPVVRTNTLLIDEDTLYERLEQLGF 87
Query: 128 NLDPLSKWSKVGL-VVYDSQVP-IGATPEYMAGFYMLQ-SASSFLPVMALAPQEKERVID 184
L+ + KWS+ V+ + P IGAT EY+ G+Y + ++S +PV L + + V+D
Sbjct: 88 KLERI-KWSRESYRVISAPKSPSIGATHEYLKGYYYVHRDSASLVPVKLLMHEFEGDVLD 146
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
AAPGGK TYIA ++ N + AN++ RLKSL ++ RM + N +V D +LP +
Sbjct: 147 ACAAPGGKATYIAQILNNKYEVLANDLVLYRLKSLIGHIARMRIKNIVVTWSDARKLP-I 205
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
L DRVLLD PCSG G I D+ KT SL+D+ + + +++L+ IDM+ N
Sbjct: 206 LIDKRYDRVLLDVPCSGEGTIMFDQGRKTRTSLKDLARIVRREIEILLSGIDMLTKN--- 262
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLV--PCGLDFGRQGFVRFREHRFHPSLEK 361
G + Y TCSI ENE V+ L+ R D+++V P L + F +
Sbjct: 263 -GVLAYVTCSIAPEENEYVVAKVLEMRDDIEIVKPPVKLFDWSPWLKSYLGINFPNEFKY 321
Query: 362 TRRFYPHVHNMDGFFVAKLKKM 383
R +PH+H+M G L+++
Sbjct: 322 CIRIWPHIHSMIGLTTCLLRRI 343
>gi|448474110|ref|ZP_21602078.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum aidingense
JCM 13560]
gi|445818390|gb|EMA68249.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum aidingense
JCM 13560]
Length = 310
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 144/287 (50%), Gaps = 9/287 (3%)
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
+ ++P P +R N + + + GV +P+ +W GL P G P Y+
Sbjct: 20 ACDRPLPSVVRVNGIAASPARVREAFDEEGVAYEPV-EWHD-GLFRLPDGNPGGNWP-YV 76
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
G+ Q S LP +AL PQ ERV D AAPG KTT IA M + G + AN+ RL
Sbjct: 77 HGWTHGQEEVSVLPGLALDPQPGERVWDACAAPGSKTTQIADAMDDDGTVVANDNNLGRL 136
Query: 217 KSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSK 275
+L N R+GVTN IV N D N K L + DR L+DAPCS G K+ V
Sbjct: 137 SALRHNAERLGVTNAIVTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVDQW 196
Query: 276 SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
+L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D+ L D ++
Sbjct: 197 TLDHVHGVAGIQKGILARAVQA----TRPGGTVVYSTCTFAPEENEAVLDHVLANEDCEI 252
Query: 336 VPCGLDFGR-QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
V L G + F S+ + R YPH ++ GFF AKL+
Sbjct: 253 VDVDLPLDTVPGVTEWDGETFDDSVTRAHRIYPHHNDTGGFFCAKLR 299
>gi|423686021|ref|ZP_17660829.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri SR5]
gi|371494089|gb|EHN69687.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri SR5]
Length = 473
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 158/301 (52%), Gaps = 21/301 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK + + + +L+P+ W G + V +
Sbjct: 27 EFIAACKRPLRRSIRVNTLKNSVEEFKQRAVEKQWDLEPVP-WCDTGFWITRPESDTVKL 85
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+MAG + +Q ASS +PV AL + E +DMA+APG KTT +AA MKN G +
Sbjct: 86 GSTAEHMAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGALV 145
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE +SR+K L +N+ R GV+N + ++DG L T D +LLDAPCSG G I K
Sbjct: 146 ANEFSSSRVKVLCSNIQRCGVSNVALTHFDGRVFGGWLP-ETFDSILLDAPCSGEGTIRK 204
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q+ LI +A + K GG +VYSTC++ EN+ + +
Sbjct: 205 DPDAMHNWSPESVIEIGDTQRDLIESAFHAL----KPGGVMVYSTCTLNHEENQNICHHL 260
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+++ V P G F +E H YP + + +GFFVAK++K S+
Sbjct: 261 VEQFGDTVTFEPLGDLFENAEKALTKEGFLH--------IYPQIFDSEGFFVAKIRKNSS 312
Query: 386 S 386
+
Sbjct: 313 T 313
>gi|397165222|ref|ZP_10488675.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
radicincitans DSM 16656]
gi|396093329|gb|EJI90886.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
radicincitans DSM 16656]
Length = 464
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 160/299 (53%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK ++ G L P+ W + G + + +P+
Sbjct: 13 EFIAACQRPLRRSIRVNTLKISVAYFLTLVAPYGWQLTPV-PWCEEGFWIERDDEEALPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+D+AAAPG KTT IAA M N+G I
Sbjct: 72 GSTAEHLSGMFYIQEASSMLPVAALFADGEMPQRVMDVAAAPGSKTTQIAARMNNSGTIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 132 ANEFSASRVKVLHANISRNGIRNVALTHFDGRVFGPALP-EMFDAILLDAPCSGEGVVRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S+ + + Q++LI +A + + GG +VYSTC++ ENEA+ +
Sbjct: 191 DADALKNWSVASNLEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNRDENEAICHWL 246
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ V+ +P F E H +P +++ +GFFVA+L+K +
Sbjct: 247 WEQYPDAVEFLPLDGLFADAARAITAEGFLH--------VFPQIYDCEGFFVARLRKTA 297
>gi|296101829|ref|YP_003611975.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295056288|gb|ADF61026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 480
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 165/317 (52%), Gaps = 26/317 (8%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DS 145
+ L + I + ++P +R NTLK D ++ L P+ W + G + ++
Sbjct: 24 LSLDDFIAACQRPLRRSIRVNTLKISVADFLALVSPYHWQLTPV-PWCEEGFWIEREDEA 82
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNT 203
+P+G+T E+++G + +Q ASS LPV AL ERV+D+AAAPG KTT IAA M N
Sbjct: 83 SLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMANR 142
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG G
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIQNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEG 201
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
V+ KD + S+E + Q++LI +A + + GG +VYSTC++ ENE V
Sbjct: 202 VVRKDPDALKNWSVESNLDIASTQRELIDSAFHAL----RPGGTLVYSTCTLNRDENEEV 257
Query: 324 IDY--ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ A V+ +P F E P E +P +++ +GFFVA+L+
Sbjct: 258 CLWLKAQYPDAVEFLPLNDLFASA------EDAITP--EGFLHVFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQPSET 398
K + + P P+ T
Sbjct: 310 KTA-----AIAPLPAPT 321
>gi|392979604|ref|YP_006478192.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. dissolvens SDM]
gi|392325537|gb|AFM60490.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. dissolvens SDM]
Length = 480
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 160/301 (53%), Gaps = 21/301 (6%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQV 147
L + I + ++P +R NTLK D ++ L P+ W + G + ++ +
Sbjct: 26 LDDFIAACQRPLRRSIRVNTLKISVADFLTLVSPYNWQLMPV-PWCEEGFWIEREDEASL 84
Query: 148 PIGATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGL 205
P+G+T E+++G + +Q ASS LPV AL ERV+D+AAAPG KTT IAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMANRGA 144
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265
I ANE ASR+K L AN+ R G+ N + ++DG L T D +LLDAPCSG GV+
Sbjct: 145 ILANEFSASRVKVLHANISRCGIQNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVV 203
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD + S+E + Q++LI +A+ + + GG +VYSTC++ ENE V
Sbjct: 204 RKDPDALKNWSVESNLDIAATQRELIDSALHAL----RPGGTLVYSTCTLNRDENEDVCL 259
Query: 326 Y--ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ A V+ +P F E H +P +++ +GFFVA+L+K
Sbjct: 260 WLQAQYPDAVEFLPLDDLFASAKDAITPEGFLH--------VFPQIYDCEGFFVARLRKT 311
Query: 384 S 384
+
Sbjct: 312 A 312
>gi|358410649|gb|AEU10038.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Photobacterium
damselae subsp. piscicida]
Length = 476
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 168/313 (53%), Gaps = 25/313 (7%)
Query: 82 LVEMFPP--VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVG 139
L+E P + L E + + P +R NTLK D + + ++G L P+ W G
Sbjct: 14 LIEQTMPKHLNLDEFVACCKTPLRRSIRVNTLKISVSDFLERVADKGWTLTPVP-WCDTG 72
Query: 140 LVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTT 194
+ ++ V +G T E+MAG + +Q ASS +PV AL + V+DMA+APG KTT
Sbjct: 73 FWIERDDETSVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDNLDVVLDMASAPGSKTT 132
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
IA M+N G + ANE+ ASR+K L +NL R GV + + +++G + D +L
Sbjct: 133 QIACAMENRGALVANELAASRIKVLHSNLQRCGVYSVALTHFNGCVFGG-WAPESFDSIL 191
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
LDAPCSG G I KDE + +L I++ + +Q+ LI++A + K GG +VYSTC+
Sbjct: 192 LDAPCSGEGAIRKDEDAMKNWTLNSIEEIAEVQRNLIVSAFQAL----KPGGVMVYSTCT 247
Query: 315 IMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
+ EN+ V Y LK+ V+ P + F + + + YP V++
Sbjct: 248 LNTRENQDVCHY-LKETYGDAVEFEPL--------YDLFEGAKETLTEDGFLHVYPQVYD 298
Query: 372 MDGFFVAKLKKMS 384
+GFFVA+++K++
Sbjct: 299 SEGFFVARIRKLA 311
>gi|227111581|ref|ZP_03825237.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 484
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 163/302 (53%), Gaps = 17/302 (5%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ-- 146
+ + + I + ++P +R NTLK +++ G L+P+ W + G + +++
Sbjct: 25 LSMEDFIAACQRPLRRSIRVNTLKISVDAFLELVQPYGWQLEPI-PWCQEGFWLLNAEEE 83
Query: 147 -VPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNT 203
+G T E+++G + +Q ASS LPV AL + + V+D+AAAPG KTT IAA + N
Sbjct: 84 NTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNDALDTVLDVAAAPGSKTTQIAARLNNE 143
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
G I ANE ASR+K L AN+ R GV+NT + ++DG L D +LLDAPCSG G
Sbjct: 144 GAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRVFGAALP-EYFDAILLDAPCSGEG 202
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
V+ KD + + S E I + Q+ LIL+A + K GG ++YSTC++ EN+ V
Sbjct: 203 VVRKDPAAMSHWSQESITDIAATQRDLILSAFHAL----KPGGVMIYSTCTLNRQENQQV 258
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
+ + P +F F + + E +P +++ +GFFVA+L+K
Sbjct: 259 CHWLQTQ-----FPDACEF-ESLHALFTDAEHATTEEGFLHVFPQIYDSEGFFVARLRKT 312
Query: 384 SN 385
++
Sbjct: 313 AS 314
>gi|422805845|ref|ZP_16854277.1| NOL1/NOP2/sun family protein [Escherichia fergusonii B253]
gi|324113570|gb|EGC07545.1| NOL1/NOP2/sun family protein [Escherichia fergusonii B253]
Length = 479
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 165/314 (52%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + L P+ W + G + + +P+
Sbjct: 28 DFLSACQRPLRRSIRVNTLKISVADFLQLTAPYNWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL +RV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAARMNNEGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVCLW- 260
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFFVAKLK 381
LK+ P ++F G P +K +P +++ +GFFVA+L+
Sbjct: 261 LKET----YPDAVEFLTLG-------DLFPGADKALTEEGFLHVFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPAP 320
>gi|14591319|ref|NP_143397.1| hypothetical protein PH1537 [Pyrococcus horikoshii OT3]
gi|3257964|dbj|BAA30647.1| 312aa long hypothetical nucleolar protein [Pyrococcus horikoshii
OT3]
Length = 312
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 152/285 (53%), Gaps = 10/285 (3%)
Query: 100 KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSK-VGLVVYDSQVPIGATPEYMAG 158
KP +R NTLK + ++ L+ L+ + W+K G + V G EY G
Sbjct: 33 KPLRPSIRINTLKGKLNEIKK-LLEEKFELERIP-WTKGEGFYINSYSVNYGELIEYSLG 90
Query: 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS 218
+ Q ASS +P + L P+ E ++DMAAAPG KTT IA M+N G I AN+ K R
Sbjct: 91 LIIPQEASSMIPPVVLDPKPGELILDMAAAPGSKTTQIAQYMENDGCIIANDAKRDRANI 150
Query: 219 LTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLE 278
L ANL R GV V DG K +T DR+LLDAPCS G+I K+ + SL
Sbjct: 151 LIANLTRAGVLIAKVTVRDGAHYAKY--EDTFDRILLDAPCSSVGMIRKNFKFAKTWSLG 208
Query: 279 DIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338
+ S LQK+LILAA + K GG +VYSTC++ ENE V+DY L+K D KL
Sbjct: 209 KVYYHSRLQKKLILAAYRAL----KPGGVLVYSTCTVDPLENEEVVDYLLQKTDAKLKKI 264
Query: 339 GLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
L + + + R+ L+KT R +P ++ + F++AK+ K
Sbjct: 265 NLPIKSTEPVLEWEGRRYSEELKKTIRIHPQDNDTEAFYIAKIIK 309
>gi|153000967|ref|YP_001366648.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
OS185]
gi|151365585|gb|ABS08585.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella baltica
OS185]
Length = 505
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 183/367 (49%), Gaps = 35/367 (9%)
Query: 60 YVQQLKLDLGSY------YGYNEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLK 112
Y +QL L SY N+ I + + P + + E I + ++P +R NTLK
Sbjct: 3 YSRQLIHSLFSYGSMKSMVQLNQNFIDTITQELPAHLSMDEFIAACDRPLRRSIRVNTLK 62
Query: 113 TRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPV 171
D ++ +G DP+ W + G + YD + +G E++ G + +Q ASS LP
Sbjct: 63 ISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPP 121
Query: 172 MAL-------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224
AL + + V+D+A+APG KTT +AALM+N GL+ ANE ASR+K L AN+
Sbjct: 122 TALFTPSAFTTSAKWQYVLDLASAPGSKTTQMAALMQNQGLLVANEYSASRVKVLHANVL 181
Query: 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS 284
RMG ++ + ++DG + L + D VL+DAPC G G + KD SL+D+ S
Sbjct: 182 RMGASHCALTHFDGRVFGEYL-YESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAIS 240
Query: 285 YLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK--RDVKLVPCGLDF 342
QK LI +A + K GG +VYSTC++ EN+ V +Y LK+ D D
Sbjct: 241 ETQKALIESAFLAL----KPGGSLVYSTCTLNRLENQGVCEY-LKQVYGDAVQFESLSDL 295
Query: 343 GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQ 402
F + E +P +++ +GFFVAKL K ++ + QP +++
Sbjct: 296 -------FDGAERATTAEGFLHVWPQIYDSEGFFVAKLTKTASVPRL----QPEPKLQKN 344
Query: 403 TPESNVS 409
P + S
Sbjct: 345 FPFTTAS 351
>gi|254230456|ref|ZP_04923834.1| NOL1/NOP2/sun family putative RNA methylase protein [Vibrio sp.
Ex25]
gi|151937027|gb|EDN55907.1| NOL1/NOP2/sun family putative RNA methylase protein [Vibrio sp.
Ex25]
Length = 518
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 159/301 (52%), Gaps = 26/301 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I S +KP +R NTLK + +G L P+ W G + +S VP+G
Sbjct: 67 DFIASCQKPLRKSIRVNTLKISVEAFLERADAKGWKLSPVP-WCDTGFWIEADESVVPLG 125
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALM N G++ A
Sbjct: 126 NTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVA 185
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G + KD
Sbjct: 186 NEYAASRVKVLHANVERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTVRKD 244
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 245 EDAMKNWTQASVLDIADTQKDLIESAFHAL----KPGGVMVYSTCTLSTEENQQVCHH-L 299
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRF---HPSL--EKTRRFYPHVHNMDGFFVAKLKKM 383
K+ FG E F + +L E +P V++ +GFFVA+++K+
Sbjct: 300 KET----------FGDAVEFESLETLFENANAALTEEGFLHIFPQVYDCEGFFVARIRKL 349
Query: 384 S 384
+
Sbjct: 350 A 350
>gi|420366928|ref|ZP_14867752.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1235-66]
gi|391323812|gb|EIQ80436.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1235-66]
Length = 462
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + +L P+ W G + + +P+
Sbjct: 13 DFLAASQRPLRRSIRVNTLKISVADFLSLTAPYNWSLTPV-PWCAEGFWIERDDEESLPL 71
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+D+AAAPG KTT IAA M N G I
Sbjct: 72 GSTAEHLSGLFYIQEASSMLPVAALFAEGNTPQRVMDVAAAPGSKTTQIAAKMNNQGAIL 131
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ N + ++DG L + D +LLDAPCSG GV+ K
Sbjct: 132 ANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALP-ESFDAILLDAPCSGEGVMRK 190
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q++L+ +A + + GG +VYSTC++ ENE V+ +
Sbjct: 191 DPDALKNWSPESNLEIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRDENENVMQWL 246
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
++ V+ +P G F E P E +P +++ +GFFVA+L+K +
Sbjct: 247 IETYPDAVEFLPLGDLFPEA------ERALTP--EGFLHVFPQIYDCEGFFVARLRKTA 297
>gi|257096818|sp|A6WP46.2|RSMF_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 486
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 176/346 (50%), Gaps = 29/346 (8%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I + + P + + E I + ++P +R NTLK D ++ +G DP+
Sbjct: 5 NQNFIDTITQELPAHLSMDEFIAACDRPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI- 63
Query: 134 KWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL-------APQEKERVIDM 185
W + G + YD + +G E++ G + +Q ASS LP AL + + V+D+
Sbjct: 64 PWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQYVLDL 123
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APG KTT +AALM+N GL+ ANE ASR+K L AN+ RMG ++ + ++DG + L
Sbjct: 124 ASAPGSKTTQMAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYL 183
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
+ D VL+DAPC G G + KD SL+D+ S QK LI +A + K G
Sbjct: 184 -YESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLAL----KPG 238
Query: 306 GYIVYSTCSIMVTENEAVIDYALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
G +VYSTC++ EN+ V +Y LK+ D D F + E
Sbjct: 239 GSLVYSTCTLNRLENQGVCEY-LKQVYGDAVQFESLSDL-------FDGAERATTAEGFL 290
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVS 409
+P +++ +GFFVAKL K ++ + QP +++ P + S
Sbjct: 291 HVWPQIYDSEGFFVAKLTKTASVPRL----QPEPKLQKNFPFTTAS 332
>gi|113970005|ref|YP_733798.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. MR-4]
gi|113884689|gb|ABI38741.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. MR-4]
Length = 509
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 179/346 (51%), Gaps = 34/346 (9%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I + + P + + + I + +P +R NTLK D ++ +G DP+
Sbjct: 33 NQNFINTIAQELPAHLSMDDFIAACSRPLRRSIRVNTLKISSEDFKQLMQPKGWTFDPIP 92
Query: 134 KWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL-APQ-EKERVIDMAAAPG 190
W + G + YD + +G E++ G + +Q ASS LP AL P + + V+D+A+APG
Sbjct: 93 -WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPG 151
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N GL+ ANE ASR+K L AN+ RMG ++ + ++DG + L +
Sbjct: 152 SKTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYL-YESF 210
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPC G G++ KD S SL+++ + S QK LI +A + K GG +VY
Sbjct: 211 DAVLIDAPCGGEGIVRKDADALKSWSLDEVLEISETQKALIESAFLAL----KPGGSLVY 266
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKTR------ 363
STC++ EN+ V +Y + +G V+F ++ EK
Sbjct: 267 STCTLNRHENQGVCEYLQQT-----------YGDA--VQFESLNQLFDGAEKATTPEGFL 313
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVS 409
+P +++ +GFFVAKL K + + QP +++ P + S
Sbjct: 314 HVWPQIYDSEGFFVAKLTKTRSVPRL----QPEPKLQKNFPFTEAS 355
>gi|157375779|ref|YP_001474379.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sediminis
HAW-EB3]
gi|254766868|sp|A8FWM8.1|RSMF_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|157318153|gb|ABV37251.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sediminis
HAW-EB3]
Length = 478
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 169/318 (53%), Gaps = 30/318 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQVPIGA 151
+ I KP +R NTLK +D ++ +G L+P+ W + G + DS V +G
Sbjct: 24 DFISYSSKPLRPSIRINTLKISSQDFIALMAPKGWTLEPI-PWCQDGFWISLDSDVQLGN 82
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLIY 207
T E++ G + +Q ASS LP +AL + ++ ++DMA+APG KTT IAA+M N+GL+
Sbjct: 83 TVEHLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDMASAPGSKTTQIAAMMDNSGLLI 142
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE +SR+K L AN+ RMGV+NT + ++D + L + D +LLDAPCSG G I K
Sbjct: 143 ANEYSSSRVKVLHANVLRMGVSNTALTHFDARVFGEYL-YDQFDAILLDAPCSGEGTIRK 201
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + L + + QK L+ +A + K+GG +VYSTC++ EN+ V ++
Sbjct: 202 DPLALNNWGLAENSAIAETQKALLESAFLAL----KTGGSLVYSTCALSKLENQDVCEHL 257
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSK 387
P ++F + F + + E +P +++ +GFF+AK+ K +
Sbjct: 258 RST-----FPEAVEFESLATL-FPDADKACTDEGFLHVWPQIYDSEGFFIAKITKTCD-- 309
Query: 388 KTSAGPQPSETVEQQTPE 405
VE+Q PE
Sbjct: 310 -----------VERQKPE 316
>gi|146325701|sp|Q0HJM6.2|RSMF_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 481
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 179/346 (51%), Gaps = 34/346 (9%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I + + P + + + I + +P +R NTLK D ++ +G DP+
Sbjct: 5 NQNFINTIAQELPAHLSMDDFIAACSRPLRRSIRVNTLKISSEDFKQLMQPKGWTFDPIP 64
Query: 134 KWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL-APQ-EKERVIDMAAAPG 190
W + G + YD + +G E++ G + +Q ASS LP AL P + + V+D+A+APG
Sbjct: 65 -WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPG 123
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N GL+ ANE ASR+K L AN+ RMG ++ + ++DG + L +
Sbjct: 124 SKTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYL-YESF 182
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPC G G++ KD S SL+++ + S QK LI +A + K GG +VY
Sbjct: 183 DAVLIDAPCGGEGIVRKDADALKSWSLDEVLEISETQKALIESAFLAL----KPGGSLVY 238
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKTR------ 363
STC++ EN+ V +Y + +G V+F ++ EK
Sbjct: 239 STCTLNRHENQGVCEYLQQT-----------YGDA--VQFESLNQLFDGAEKATTPEGFL 285
Query: 364 RFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVS 409
+P +++ +GFFVAKL K + + QP +++ P + S
Sbjct: 286 HVWPQIYDSEGFFVAKLTKTRSVPRL----QPEPKLQKNFPFTEAS 327
>gi|402814815|ref|ZP_10864408.1| ribosomal RNA small subunit methyltransferase F [Paenibacillus
alvei DSM 29]
gi|402507186|gb|EJW17708.1| ribosomal RNA small subunit methyltransferase F [Paenibacillus
alvei DSM 29]
Length = 473
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 148/297 (49%), Gaps = 30/297 (10%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ S++ PR LR N K A + + +L P+ W + G YD G P
Sbjct: 29 FLLSYKDPRTFGLRANPTKWITHADARLNAEQLFHLRPV-PWCEEG-YYYDEASRPGKHP 86
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
+ AGFY +Q S+ V L PQ E ++D+AAAPGGK+T+IA M+ G++ ANE+
Sbjct: 87 YHAAGFYYIQEPSAMSAVALLDPQPGEFILDLAAAPGGKSTHIAGRMRGEGVLIANEIHP 146
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKT 273
R K L N+ RMG+ NTIV D + L + DR++LDAPCSG G+ KDE
Sbjct: 147 QRAKILAENIERMGIGNTIVTQSDPHALASKFP-HAFDRIMLDAPCSGEGMFRKDEDAIR 205
Query: 274 SKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333
S E + C+ Q +I AA+ M+ K GG I YSTC+ ENE +ID+ L+
Sbjct: 206 EWSPEHVAMCAARQWDIIQAAVAML----KPGGTIAYSTCTFNRQENEEIIDHWLRH--- 258
Query: 334 KLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTS 390
F +F+ L + R +PH +G FVA L+ ++ ++
Sbjct: 259 -------------FDQFK-------LLRMERIWPHQAEGEGHFVAVLQWQADHSAST 295
>gi|323498366|ref|ZP_08103366.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sinaloensis
DSM 21326]
gi|323316608|gb|EGA69619.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sinaloensis
DSM 21326]
Length = 474
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 159/304 (52%), Gaps = 31/304 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I + ++P +R NTLK D + L P+ W G + +S VP+G
Sbjct: 27 DFIAACQRPLRKSIRVNTLKISIDDFLSRAAEKNWVLSPV-PWCPEGFWIEADESSVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
T E+M+G + +Q ASS +PV AL + E V+DMAAAPG KTT IAA M N G++
Sbjct: 86 NTAEHMSGLFYIQEASSMMPVSALFLSSEDEFTSVLDMAAAPGSKTTQIAAKMGNDGVLV 145
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE +SR+K L AN+ R GV NT++ NYDG L + VL+DAPCSG G + K
Sbjct: 146 ANEFSSSRVKVLHANIERCGVRNTVLSNYDGRVFGGWLP-EQFEAVLIDAPCSGEGTVRK 204
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + + + + S QK LI +A + K GG +VYSTC++ + EN+ V +
Sbjct: 205 DADAMKNWTKSSVIEISETQKDLIESAFHAL----KVGGSMVYSTCTLSIEENQQVCHH- 259
Query: 328 LKKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKT------RRFYPHVHNMDGFFVAKL 380
LK+ FG V F+ P EK+ +P ++ +GFFVA++
Sbjct: 260 LKQT----------FGDA--VEFQSLAGLFPDAEKSLTPEGFLHIFPQTYDCEGFFVARI 307
Query: 381 KKMS 384
KK +
Sbjct: 308 KKCA 311
>gi|242399529|ref|YP_002994954.1| nucleolar protein I [Thermococcus sibiricus MM 739]
gi|242265923|gb|ACS90605.1| Putative nucleolar protein I [Thermococcus sibiricus MM 739]
Length = 304
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 135/249 (54%), Gaps = 9/249 (3%)
Query: 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTT 194
W K G + + G EY G Q ASS +P + L PQ E V+DMAAAPG KTT
Sbjct: 63 WVKEGFFINTRE--FGDMIEYSLGLVFPQEASSMIPPVVLDPQPGELVLDMAAAPGAKTT 120
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
IA M+N G I AN+MK R+ L ANL+R GV NT V DG + NT D++L
Sbjct: 121 QIAQYMENKGCIIANDMKKWRVNVLIANLNRFGVLNTRVTVKDGTYFGRF--ENTFDKIL 178
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
LDAPCS G++ K S S++ + S +QK+LI+AA + K G +VYSTC+
Sbjct: 179 LDAPCSSVGMVRKSFKFLFSWSMKKVITYSNIQKKLIMAAYKAL----KPRGVLVYSTCT 234
Query: 315 IMVTENEAVIDYALKKRDVKLVPCGLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMD 373
I ENE V+DY L K D K+ L + F ++ + K R +P +N +
Sbjct: 235 IDPLENEGVVDYLLLKTDAKIEKIDLPLHSTPPVLEFDGMKYSEEVRKCLRIHPQDNNTE 294
Query: 374 GFFVAKLKK 382
FFVAK++K
Sbjct: 295 AFFVAKIRK 303
>gi|126174668|ref|YP_001050817.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
OS155]
gi|386341425|ref|YP_006037791.1| Ribosomal RNA small subunit methyltransferase F [Shewanella baltica
OS117]
gi|125997873|gb|ABN61948.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella baltica
OS155]
gi|334863826|gb|AEH14297.1| Ribosomal RNA small subunit methyltransferase F [Shewanella baltica
OS117]
Length = 505
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 186/378 (49%), Gaps = 45/378 (11%)
Query: 60 YVQQLKLDLGSY------YGYNEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLK 112
Y +QL L SY N+ I + + P + + E I + +KP +R NTLK
Sbjct: 3 YSRQLIHSLFSYGSMKSMVQLNQNFIDTITQELPAHLSMDEFIAACDKPLRRSIRVNTLK 62
Query: 113 TRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPV 171
D ++ +G DP+ W + G + YD + +G E++ G + +Q ASS LP
Sbjct: 63 ISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPP 121
Query: 172 MAL-------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224
AL + + V+D+A+APG KTT +AALM+N GL+ ANE ASR+K L AN+
Sbjct: 122 TALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQGLLVANEYSASRVKVLHANVL 181
Query: 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS 284
RMG ++ + ++DG + L + D VL+DAPC G G + KD SL+D+ S
Sbjct: 182 RMGASHCALTHFDGRVFGEYL-YESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAIS 240
Query: 285 YLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY-------ALKKRDVKLVP 337
QK LI +A + K GG +VYSTC++ EN+ V +Y A++ + +
Sbjct: 241 ETQKALIESAFLAL----KPGGSLVYSTCTLNRLENQGVCEYLKQVYGDAVQFESLSDLF 296
Query: 338 CGLDFGR--QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQP 395
G D +GF+ +P +++ +GFFVAKL K ++ + P+
Sbjct: 297 DGADRATTAEGFL---------------HVWPQIYDSEGFFVAKLTKTASVPRLLPEPKL 341
Query: 396 SETVEQQTPESNVSNGDK 413
+ T + + G K
Sbjct: 342 QKNFPFTTASAKQAQGIK 359
>gi|354724142|ref|ZP_09038357.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter mori LMG
25706]
Length = 480
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 170/332 (51%), Gaps = 38/332 (11%)
Query: 58 KEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRD 117
++++ Q++ L S+ +++F I + ++P +R NTLK D
Sbjct: 10 EQFLAQMREALPSHLSFDDF-----------------IAACQRPLRRSIRINTLKNSVAD 52
Query: 118 LADVLINRGVNLDPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
++ G L P+ W + G + + +P+G+T E+++G + +Q ASS LPV AL
Sbjct: 53 FLTLVSPYGWQLTPV-PWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAAL 111
Query: 175 APQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
+ ERV+D+AAAPG KTT IAA M N G I ANE ASR+K L AN+ R G+ N
Sbjct: 112 FAEGNAPERVMDVAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIHNVA 171
Query: 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292
+ ++DG L D +LLDAPCSG GV+ KD + S+E + Q++LI
Sbjct: 172 LTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIE 230
Query: 293 AAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY--ALKKRDVKLVPCGLDFGRQGFVRF 350
+A + + GG +VYSTC++ ENE V + A V+ +P F
Sbjct: 231 SAFHAL----RPGGTLVYSTCTLNRDENEEVCLWLKAQYPDAVEFLPLNDLFPTAHEAAT 286
Query: 351 REHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ H +P +++ +GFFVA+L+K
Sbjct: 287 PDGFLH--------VFPQIYDCEGFFVARLRK 310
>gi|312111072|ref|YP_003989388.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y4.1MC1]
gi|423720077|ref|ZP_17694259.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216173|gb|ADP74777.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y4.1MC1]
gi|383366839|gb|EID44124.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 463
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 150/282 (53%), Gaps = 11/282 (3%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LR N LKT R ++ L P+ + G YD G P + AG Y +Q
Sbjct: 42 LRFNPLKTDRETFLTLV---PFALSPVP-FCPTGFY-YDGGEQPGKHPYHAAGLYYIQEP 96
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
S+ LAP E V+D+ AAPGGKTT +AA+MKN GLI ANE+ R+K+L+ N+ R
Sbjct: 97 SAMFVAEVLAPNPGETVLDLCAAPGGKTTQLAAMMKNQGLIVANEIHPKRVKALSENIER 156
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
G+TN +V N +L K D++L+DAPCSG G+ KDE S +++C+
Sbjct: 157 FGITNALVTNETPEKLAKYFP-GFFDKILVDAPCSGEGMFRKDEEAVRFWSQAHVEQCAS 215
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344
Q+ ++ A M+ K GG +VYSTC+ ENE +I+ L+ D++L+ G
Sbjct: 216 KQRHILDCAYSML----KEGGVLVYSTCTFSPEENEQMIEAFLQTYDDLELLSIEKVHGI 271
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
Q R + +E+T R +PH +G FVAK+KK ++
Sbjct: 272 QPGRREWTNTGLEEIERTARLWPHCLKGEGHFVAKMKKTGSA 313
>gi|448688658|ref|ZP_21694395.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula japonica DSM 6131]
gi|445778528|gb|EMA29470.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula japonica DSM 6131]
Length = 303
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 146/290 (50%), Gaps = 9/290 (3%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
I++ E+P P +R NT+K + L + DP+ W GL V P GA
Sbjct: 17 FIDACERPLPSAVRVNTIKATVERVRTALAEADIAHDPVD-WHD-GLFVLPEDSP-GANW 73
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
Y G+ Q S +P L PQ ERV D AAPG KTT +AALM +TG + A +
Sbjct: 74 PYFQGWIHGQEEVSVIPAEVLDPQPGERVWDACAAPGSKTTQLAALMDDTGELVATDNNL 133
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
R+ +L N R+G T V + DG N K G DR L+D PCS G I K+
Sbjct: 134 GRISALRTNTERLGATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTL 193
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332
+L ++ S +QK ++ A+++ ++ GG +VYSTC+ ENEAV+DY L +
Sbjct: 194 EDWTLSHVEGISGVQKGILKRAVEV----TEPGGTVVYSTCTFAPEENEAVLDYVLDETA 249
Query: 333 VKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
++V L G +++ + S+ +R YPH ++ GFF AKL+
Sbjct: 250 CEIVDYDLPLDHAPGVTEWQDETYDSSVTNAKRIYPHHNDTGGFFCAKLE 299
>gi|336235521|ref|YP_004588137.1| RNA methylase [Geobacillus thermoglucosidasius C56-YS93]
gi|335362376|gb|AEH48056.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus
thermoglucosidasius C56-YS93]
Length = 463
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 150/282 (53%), Gaps = 11/282 (3%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LR N LKT R ++ L P+ + G YD G P + AG Y +Q
Sbjct: 42 LRFNPLKTDRETFLTLV---PFALSPVP-FCPTGFY-YDGGEQPGKHPYHAAGLYYIQEP 96
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
S+ LAP E V+D+ AAPGGKTT +AA+MKN GLI ANE+ R+K+L+ N+ R
Sbjct: 97 SAMFVAEVLAPNPGETVLDLCAAPGGKTTQLAAMMKNQGLIVANEIHPKRVKALSENIER 156
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
G+TN +V N +L K D++L+DAPCSG G+ KDE S +++C+
Sbjct: 157 FGITNALVTNETPEKLAKYFP-GFFDKILVDAPCSGEGMFRKDEEAVRFWSQAHVEQCAS 215
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344
Q+ ++ A M+ K GG +VYSTC+ ENE +I+ L+ D++L+ G
Sbjct: 216 KQRHILDCAYSML----KEGGVLVYSTCTFSPEENEQMIEAFLQTYDDLELLSIEKVHGI 271
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386
Q R + +E+T R +PH +G FVAK+KK ++
Sbjct: 272 QPGRREWTNTGLEEIERTARLWPHCLKGEGHFVAKMKKTGSA 313
>gi|428204437|ref|YP_007083026.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
gi|427981869|gb|AFY79469.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
Length = 446
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 170/341 (49%), Gaps = 17/341 (4%)
Query: 43 VLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPR 102
+L ++ L+ +G+ E LG Y + +++I + F E +L E F +P
Sbjct: 121 LLRQYERLAAQGSDPLELPTDPVQRLGIAYSFPDWIIQLWLAQFGVAETEKLCEWFNRPP 180
Query: 103 PICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYML 162
I LR N LKT ++A L + G+ + + + L + I P + G++ +
Sbjct: 181 EIDLRVNILKTTIDEVATALADAGITVSRVPYLPQ-ALRLIGGARSIQQLPGFQEGWWTV 239
Query: 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222
Q +S+ L L PQ E VID AAPGGKTT+IA LM + G I+A + SRL+ L N
Sbjct: 240 QDSSAQLVAHLLDPQPGEVVIDACAAPGGKTTHIAELMGDRGTIWACDRVESRLRKLQEN 299
Query: 223 LHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK 282
+ R+ + + +C D + + DRVLLDAPCSG G + + ++ ++ E I +
Sbjct: 300 IQRLQLQSIQICTGDSRQFSQF--RQRGDRVLLDAPCSGLGTLHRRPDIRWRQTPEKIAQ 357
Query: 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI-DYALKKRDVKLVPCGLD 341
S LQ++L+ V KSGG +VY TC++ ENE V+ + + D ++ P D
Sbjct: 358 LSRLQEELLTQTATWV----KSGGTLVYVTCTLNSLENETVVRAFCDRHPDWQIQPPSPD 413
Query: 342 FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
F + E + PH+H MDGFF+ KLKK
Sbjct: 414 SPAVPFT---------TSEGWIKVLPHLHQMDGFFMVKLKK 445
>gi|255099659|ref|ZP_05328636.1| putative methylase [Clostridium difficile QCD-63q42]
Length = 436
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 151/294 (51%), Gaps = 32/294 (10%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E + I+S+E+ + LR NTLK ++ L D+ + +L+ + W++ G D
Sbjct: 19 EYDDFIKSYEESKTTGLRINTLKIDKKKLFDLEL---FDLNQIP-WAEEGFYYDDKIDRP 74
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
G P + AG Y LQ S+ + +E E+V+DM AAPGGK+TYI + + +TGL+ +N
Sbjct: 75 GRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAAPGGKSTYILSKLNDTGLLVSN 134
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
E+ ASR+K+L NL R G N I+ N D N L K D+V++DAPCSG G+ KDE
Sbjct: 135 EINASRIKALGENLERFGARNCIITNTDSNSLRKTFN-GYFDKVIIDAPCSGQGMFRKDE 193
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
+ S + +C +QK++I M+ K G ++YSTC+ ENE VI+
Sbjct: 194 VAISDWSYAKVVECQSIQKEIIRDGYKML----KKDGILIYSTCTFSREENEHVIN---- 245
Query: 330 KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
F H L + R +PH +G FVAK+KK+
Sbjct: 246 -------------------EFISEYPHAELIEMERLWPHKIKGEGHFVAKIKKL 280
>gi|448739125|ref|ZP_21721142.1| RNA methylase, NOL1/NOP2/sun family protein [Halococcus
thailandensis JCM 13552]
gi|445800199|gb|EMA50559.1| RNA methylase, NOL1/NOP2/sun family protein [Halococcus
thailandensis JCM 13552]
Length = 302
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 147/288 (51%), Gaps = 11/288 (3%)
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
+ E+P P +R N +K D L + GV +P+ +W GL+ DS P G T
Sbjct: 20 ACERPLPSVVRVNEIKATPERAMDALDDEGVAYEPV-EWHP-GLLRLDSTSP-GRTWGAY 76
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
G+ Q S LP + PQ ERV AAPGGK T +AAL + G I AN+ RL
Sbjct: 77 HGWLHGQEEVSTLPALVCDPQPDERVWAACAAPGGKATQLAALADDEGTIVANDRSLGRL 136
Query: 217 KSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSK 275
+L N R+GVT+ V N D N K + D L+DAPCS G I K+
Sbjct: 137 SALRFNAERLGVTSMAVTNRDARNYSLKPFEFDEFDCALVDAPCSCEGTIRKNPDALDEW 196
Query: 276 SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
SLE I + Q+ ++ A+ ++SGG +VYSTC+ ENEAV+D L D +L
Sbjct: 197 SLEYIDSIAATQESILRRAVQA----TRSGGSVVYSTCTFAPEENEAVLDSVLSAEDCRL 252
Query: 336 V--PCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
V C L+ R G ++ F S+ K +R YPH+++ GFF AK++
Sbjct: 253 VEFSCALE-TRPGVTEWQGEAFDRSVRKAKRIYPHLNDTGGFFCAKVE 299
>gi|448439541|ref|ZP_21588105.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
saccharovorum DSM 1137]
gi|445691075|gb|ELZ43270.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
saccharovorum DSM 1137]
Length = 316
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 149/298 (50%), Gaps = 9/298 (3%)
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
+ ++P P +R N + + + GV +P+ W GL P G P Y+
Sbjct: 20 ACDRPLPSVVRVNEMAASPARVREAFDEEGVAYEPV-DWHD-GLFRLPDGNPGGNWP-YV 76
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
G+ Q S LP +AL P+ +RV D AAPG KTT IA M + G + AN+ RL
Sbjct: 77 HGWTHGQEEVSVLPGLALDPRPGDRVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRL 136
Query: 217 KSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSK 275
+L N R+G+TN IV N D N K L + DR L+DAPCS G K+ V
Sbjct: 137 SALRHNAERLGITNAIVTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVDQW 196
Query: 276 SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
+L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D+ L + D ++
Sbjct: 197 TLDHVHAVAGIQKGILARAVQA----TRPGGTVVYSTCTFAPEENEAVLDHVLGEEDCEI 252
Query: 336 VPCGLDFGR-QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAG 392
V L G + + + S+ + R YPH ++ GFF AKL+ + ++G
Sbjct: 253 VELDLPLDTVPGVTEWEDETYDESVTRAHRVYPHHNDTGGFFCAKLRVGGDDPNAASG 310
>gi|257096817|sp|A3D5D5.2|RSMF_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 486
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 170/329 (51%), Gaps = 39/329 (11%)
Query: 75 NEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
N+ I + + P + + E I + +KP +R NTLK D ++ +G DP+
Sbjct: 5 NQNFIDTITQELPAHLSMDEFIAACDKPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI- 63
Query: 134 KWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL-------APQEKERVIDM 185
W + G + YD + +G E++ G + +Q ASS LP AL + + V+D+
Sbjct: 64 PWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDL 123
Query: 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245
A+APG KTT +AALM+N GL+ ANE ASR+K L AN+ RMG ++ + ++DG + L
Sbjct: 124 ASAPGSKTTQMAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYL 183
Query: 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
+ D VL+DAPC G G + KD SL+D+ S QK LI +A + K G
Sbjct: 184 -YESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLAL----KPG 238
Query: 306 GYIVYSTCSIMVTENEAVIDY-------ALKKRDVKLVPCGLDFGR--QGFVRFREHRFH 356
G +VYSTC++ EN+ V +Y A++ + + G D +GF+
Sbjct: 239 GSLVYSTCTLNRLENQGVCEYLKQVYGDAVQFESLSDLFDGADRATTAEGFL-------- 290
Query: 357 PSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+P +++ +GFFVAKL K ++
Sbjct: 291 -------HVWPQIYDSEGFFVAKLTKTAS 312
>gi|126698132|ref|YP_001087029.1| RNA methyltransferase [Clostridium difficile 630]
gi|254974153|ref|ZP_05270625.1| putative methylase [Clostridium difficile QCD-66c26]
gi|255091554|ref|ZP_05321032.1| putative methylase [Clostridium difficile CIP 107932]
gi|255515971|ref|ZP_05383647.1| putative methylase [Clostridium difficile QCD-97b34]
gi|255649062|ref|ZP_05395964.1| putative methylase [Clostridium difficile QCD-37x79]
gi|260682253|ref|YP_003213538.1| methylase [Clostridium difficile CD196]
gi|260685852|ref|YP_003216985.1| methylase [Clostridium difficile R20291]
gi|306519175|ref|ZP_07405522.1| putative methylase [Clostridium difficile QCD-32g58]
gi|384359820|ref|YP_006197672.1| methylase [Clostridium difficile BI1]
gi|423090193|ref|ZP_17078502.1| NOL1/NOP2/sun family protein [Clostridium difficile 70-100-2010]
gi|115249569|emb|CAJ67386.1| putative RNA methyltransferase [Clostridium difficile 630]
gi|260208416|emb|CBA60960.1| putative methylase [Clostridium difficile CD196]
gi|260211868|emb|CBE02298.1| putative methylase [Clostridium difficile R20291]
gi|357556979|gb|EHJ38548.1| NOL1/NOP2/sun family protein [Clostridium difficile 70-100-2010]
Length = 436
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 151/294 (51%), Gaps = 32/294 (10%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E + I+S+E+ + LR NTLK ++ L D+ + +L+ + W++ G D
Sbjct: 19 EYDDFIKSYEESKTTGLRINTLKIDKKKLFDLEL---FDLNQIP-WAEEGFYYDDKIDRP 74
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
G P + AG Y LQ S+ + +E E+V+DM AAPGGK+TYI + + +TGL+ +N
Sbjct: 75 GRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAAPGGKSTYILSKLNDTGLLVSN 134
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
E+ ASR+K+L NL R G N I+ N D N L K D+V++DAPCSG G+ KDE
Sbjct: 135 EINASRIKALGENLERFGARNCIITNTDSNSLRKTFN-GYFDKVIIDAPCSGQGMFRKDE 193
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
+ S + +C +QK++I M+ K G ++YSTC+ ENE VI+
Sbjct: 194 VAISDWSYAKVVECQSIQKEIIRDGYKML----KKDGILIYSTCTFSREENEHVIN---- 245
Query: 330 KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
F H L + R +PH +G FVAK+KK+
Sbjct: 246 -------------------EFISEYPHAELIEMERLWPHKIKGEGHFVAKIKKL 280
>gi|148980382|ref|ZP_01816025.1| Sun/nucleolar protein family protein [Vibrionales bacterium SWAT-3]
gi|145961254|gb|EDK26566.1| Sun/nucleolar protein family protein [Vibrionales bacterium SWAT-3]
Length = 449
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 160/304 (52%), Gaps = 26/304 (8%)
Query: 91 LMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVP 148
+ + S +KP +R NTLK D ++G L+P+ W + G + +++ P
Sbjct: 1 MASFVASCQKPLRKSIRVNTLKISVEDFLVRAKDKGWELEPVP-WCETGFWITADETETP 59
Query: 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLI 206
+G + E+M+G + +Q ASS +P AL E+ + V+D AAAPG KTT IAALM N G++
Sbjct: 60 LGNSAEHMSGLFYIQEASSMMPPSALFQGEENYQAVLDTAAAPGSKTTQIAALMDNRGVL 119
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G I
Sbjct: 120 VANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGTIR 178
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + + + + + + QK LI +A + N G +VYSTC++ EN+ V +
Sbjct: 179 KDADAIKNWTYQSVVEIADTQKDLIESAFHALKPN----GVLVYSTCTLSTEENQQVCHH 234
Query: 327 ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR-----RFYPHVHNMDGFFVAKLK 381
LK+ FG E F + T +P V++ +GFFVA+++
Sbjct: 235 -LKET----------FGDAVEFESLESLFDNAKATTTEEGFLHIFPQVYDSEGFFVARIR 283
Query: 382 KMSN 385
K+++
Sbjct: 284 KLAS 287
>gi|433654230|ref|YP_007297938.1| NOL1/NOP2/sun family putative RNA methylase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292419|gb|AGB18241.1| NOL1/NOP2/sun family putative RNA methylase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 466
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 20/302 (6%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
+ +EK LR NTLK + + + V++ W G YD G
Sbjct: 36 FMREYEKEPYRGLRVNTLKISADEFLRISPFKLVSV----PWCDTGFY-YDQNDKPGKHY 90
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
+ AG + +Q S+ V AL P + V+D++AAPGGK+T+IA+ +K GL+ +NE+ +
Sbjct: 91 YHDAGLFYIQEPSAMAVVEALNPVPGDIVLDLSAAPGGKSTHIASKLKGEGLLVSNEINS 150
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKT 273
R+K L N+ RMG+ N ++ N +L K + D++L+DAPCSG G+ KDE+ +
Sbjct: 151 KRVKVLAENIERMGIRNAVILNESPEKLEKTFK-DYFDKILVDAPCSGEGMFRKDETARD 209
Query: 274 SKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-D 332
SLE++ C+Y QK+++ +A M+ K GG +VYSTC+ ENE VID+ LK D
Sbjct: 210 EWSLENVLSCAYRQKKIVDSASCML----KPGGIMVYSTCTFSPEENEGVIDHFLKNHSD 265
Query: 333 VKLVPC----GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK 388
+L+ G D G +V L K R +PH+ +G F+AKL+K K
Sbjct: 266 FELIEIYKHEGFDNGHSEWVNGCS-----DLRKCVRLWPHLLKGEGHFIAKLRKNGIYDK 320
Query: 389 TS 390
+S
Sbjct: 321 SS 322
>gi|354597787|ref|ZP_09015804.1| Ribosomal RNA small subunit methyltransferase F [Brenneria sp.
EniD312]
gi|353675722|gb|EHD21755.1| Ribosomal RNA small subunit methyltransferase F [Brenneria sp.
EniD312]
Length = 484
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 166/327 (50%), Gaps = 23/327 (7%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
EFL M + + E I + ++P +R NTLK ++ L+P+ W
Sbjct: 12 EFLSAIQAVMPAHLSMDEFIATCQRPLRRSIRVNTLKIDSAAFLKLVEPYQWRLEPI-PW 70
Query: 136 SKVGLVVY----DSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAP 189
+ G + D + +G T E+++G + +Q ASS LPV AL + RV+D+AAAP
Sbjct: 71 CRDGFWLLNADDDETLRLGNTLEHLSGLFYIQEASSMLPVGALFHHDAAPRRVLDVAAAP 130
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G KTT IAA M N G I ANE ASR+K L AN+ R GV NT + ++DG L
Sbjct: 131 GSKTTQIAAAMDNQGAIIANEYSASRVKVLHANISRCGVGNTALTHFDGRVFGAALP-EY 189
Query: 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
D +LLDAPCSG GV+ KD + S E I + Q++LIL+A + K GG ++
Sbjct: 190 FDAILLDAPCSGEGVVRKDPTAMNHWSPESIAGIAATQRELILSAFHAL----KPGGVLI 245
Query: 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHV 369
YSTC++ EN+ V + K P +F + F + E +P +
Sbjct: 246 YSTCTLNAQENQQVCRWLRKT-----FPDACEFEPLDDL-FPGAERAATTEGFLHVFPQI 299
Query: 370 HNMDGFFVAKLKKMSNSKKTSAGPQPS 396
++ +GFFVA+L+K + S P P+
Sbjct: 300 YDSEGFFVARLRKTA-----SVAPLPT 321
>gi|448502993|ref|ZP_21612857.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum coriense
DSM 10284]
gi|445693395|gb|ELZ45547.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum coriense
DSM 10284]
Length = 315
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 151/297 (50%), Gaps = 13/297 (4%)
Query: 91 LMELIESF----EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
L++ +++F ++P P +RTN + + + GV +P+ W GL
Sbjct: 10 LVDDVDAFRAACDRPLPSVVRTNGIAATPTRVREAFDESGVAYEPVG-WHD-GLFRLPDG 67
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
P G P Y+ G+ Q S LP +AL P+ ERV D AAPG KTT IA M + G +
Sbjct: 68 NPGGNWP-YVHGWTHGQEEVSVLPTLALDPEPGERVWDACAAPGSKTTQIADAMDDEGTV 126
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVI 265
AN+ RL +L N R+G+TN IV N D N K L + DR L+DAPCS G
Sbjct: 127 VANDNNLGRLSALRHNAERLGITNAIVTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTC 186
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
K+ V +L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D
Sbjct: 187 RKNPDVLDQWTLDHVHAVAGIQKGVLARAVQA----TRPGGVVVYSTCTFAPEENEAVLD 242
Query: 326 YALKKRDVKLVPCGLDFGRQ-GFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ L + +LV L G + + S+ + +R YPH ++ GFF AKL+
Sbjct: 243 HVLANEECELVDFDLPLETDPGVTEWEGETYDESVTRAQRVYPHRNDTGGFFCAKLR 299
>gi|305663869|ref|YP_003860157.1| Fmu (Sun) domain-containing protein [Ignisphaera aggregans DSM
17230]
gi|304378438|gb|ADM28277.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
Length = 367
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 171/332 (51%), Gaps = 26/332 (7%)
Query: 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFE----KPRPICLRTNTLKTRRRDLADVL 122
+L YGY ++++ +++ E L+ +FE +P IC N L+T +L L
Sbjct: 48 ELAKTYGYLDYMVQRYIDILGLEETKSLLNAFENFKIQPTIIC---NFLRTSCEELLQQL 104
Query: 123 INRGVNLDPLSKWSKVGLVVYDSQVP-IGATPEYMAG-FYMLQSASSFLPVMALAPQEKE 180
L+ +S V+ + P IG+T +Y+ G +Y+ + A+S +P + L P +
Sbjct: 105 YRLNFRLELVSWCHHCYRVISSPKHPSIGSTHQYLKGLYYVYRDAASTIPPLILNPTKGS 164
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+IDM AAPGGK +I+ L+++ G + N++ RL++L +N +RMG + I+ N+D
Sbjct: 165 SIIDMCAAPGGKAIHISLLIRDEGFLILNDISIKRLEALISNYYRMGFKSYIIINHDATL 224
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPK+L D V LDAPCS G I D S K S D+ K L+ I+++ +
Sbjct: 225 LPKILNYK-FDYVFLDAPCSAEGAIMFDPSRKRKTSQGDLVK-------LVTREINLLLS 276
Query: 301 NSKS---GGYIVYSTCSIMVTENEAVIDYALKKRDVKLV----PCGLDFGRQGFVRFREH 353
K GG IVY+TCSI ENE VI L K+V P + G FR
Sbjct: 277 ALKLAKIGGRIVYTTCSIAPEENEYVISKVLSIAGSKIVIESPP--FNLWSSGLRTFRNI 334
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
F +EK R +PH H M+GFF+ L+K+ +
Sbjct: 335 EFARDVEKCIRIWPHKHMMEGFFICLLRKIKD 366
>gi|121535023|ref|ZP_01666841.1| putative RNA methylase, NOL1/NOP2/sun family [Thermosinus
carboxydivorans Nor1]
gi|121306436|gb|EAX47360.1| putative RNA methylase, NOL1/NOP2/sun family [Thermosinus
carboxydivorans Nor1]
Length = 458
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 162/319 (50%), Gaps = 40/319 (12%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS----KWSKVGLVVYDS 145
E +S+E+PR LR NTLK +L V+L P + W+ G +
Sbjct: 20 EFAAFYQSYEEPRTYGLRVNTLKITPAEL--------VSLAPFALTPVPWATDGFYCLEE 71
Query: 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL 205
Q P G P + AG Y +Q S+ LAPQ E V+D+AAAPGGK T++AA M+ GL
Sbjct: 72 QRP-GKHPYHAAGLYYIQEPSAMAAAPLLAPQPGEFVLDLAAAPGGKATHLAAFMQGQGL 130
Query: 206 IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG---LNTVDRVLLDAPCSGT 262
+ ANE+ +R K L+ N+ R+GV N IV NE P L DR+L+DAPCSG
Sbjct: 131 LIANEVHPARAKILSENIERLGVKNCIVT----NETPPRLAERFPAFFDRILVDAPCSGE 186
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G+ KD + + + ++C+ Q++++ A+ M+ KSGG+++YSTC+ ENE
Sbjct: 187 GMFRKDPAACQEWTQDAPRQCAARQREILADAVRML----KSGGWLLYSTCTFAPEENEE 242
Query: 323 VIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR-------RFYPHVHNMDG 374
++D+ L D+ +VP + G V P+ R R +PH +G
Sbjct: 243 IVDWLLAAYPDLAVVPLPHNHGFASAV--------PAWGGGRSDLAGAVRLWPHKLRGEG 294
Query: 375 FFVAKLKKMSNSKKTSAGP 393
F+A L+K K T P
Sbjct: 295 HFLALLRKQGEGKGTGIRP 313
>gi|296449347|ref|ZP_06891129.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP08]
gi|296880719|ref|ZP_06904671.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP07]
gi|296261817|gb|EFH08630.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP08]
gi|296428292|gb|EFH14187.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP07]
Length = 436
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 151/294 (51%), Gaps = 32/294 (10%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E + I+S+E+ + LR NTLK ++ L D+ + +L+ +S W++ G D
Sbjct: 19 EYDDFIKSYEESKTTGLRINTLKIDKKKLFDLGL---FDLNQIS-WAEEGFYYDDKIDRP 74
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
G P + AG Y LQ S+ + +E E+V+DM AAPGGK+TYI + + +TGL+ +N
Sbjct: 75 GRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAAPGGKSTYILSKLNDTGLLVSN 134
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
E+ SR+K+L NL R G N I+ N D N L K D+V++DAPCSG G+ KDE
Sbjct: 135 EINVSRIKALGENLERFGARNCIITNTDSNSLRKTFN-GYFDKVIIDAPCSGQGMFRKDE 193
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
+ S + +C +QK++I M+ K G ++YSTC+ ENE VI+
Sbjct: 194 VAISDWSHAKVVECQSIQKEIIRDGYKML----KKDGILIYSTCTFSREENEHVIN---- 245
Query: 330 KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
F H L + R +PH +G FVAK+KK+
Sbjct: 246 -------------------EFISEYPHAELIEMERLWPHKIKGEGHFVAKIKKL 280
>gi|448454964|ref|ZP_21594366.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum lipolyticum
DSM 21995]
gi|445814344|gb|EMA64309.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum lipolyticum
DSM 21995]
Length = 310
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 147/298 (49%), Gaps = 10/298 (3%)
Query: 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYM 156
+ ++P P +R N + + GV DP+ W GL P G P Y+
Sbjct: 20 ACDRPLPSVVRVNETAASPARVREAFDEEGVAYDPVG-WHD-GLFRLPDGNPGGNWP-YV 76
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
G+ Q S LP +AL PQ ERV D AAPG KTT IA M + G + AN+ RL
Sbjct: 77 HGWTHGQEEVSVLPGLALDPQPGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRL 136
Query: 217 KSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSK 275
+L N R+G+TN IV N D N K L + DR L+DAPCS G K+ V
Sbjct: 137 SALRHNAERLGITNAIVTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVDQW 196
Query: 276 SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
+L+ + + +QK ++ A+ ++ GG +VYSTC+ ENEAV+D+ L + D ++
Sbjct: 197 TLDHVHAVAGIQKGILARAVQA----TRPGGTVVYSTCTFAPEENEAVLDHVLGEEDCEI 252
Query: 336 VPCGLDFGR-QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAG 392
V L G + + S+ + R YPH ++ GFF AKL ++ + T G
Sbjct: 253 VEFDLPLDTVPGVTEWDGETYDESVTRAHRVYPHHNDTGGFFCAKL-RVGGDENTEVG 309
>gi|415856297|ref|ZP_11531283.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2a str. 2457T]
gi|417722887|ref|ZP_12371705.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-304]
gi|417727323|ref|ZP_12376062.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-671]
gi|420341471|ref|ZP_14842972.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-404]
gi|313649129|gb|EFS13563.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2a str. 2457T]
gi|332762898|gb|EGJ93152.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-671]
gi|333018339|gb|EGK37638.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-304]
gi|391269823|gb|EIQ28721.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-404]
Length = 421
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 168/317 (52%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE AS +K L AN+ R G++N + ++ G +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASWVKVLHANISRCGISNVALTHFGG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYST ++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTYTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ +V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCRW-LKETYPDEVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>gi|335438273|ref|ZP_08561021.1| RNA methylase, NOL1/NOP2/sun family protein [Halorhabdus tiamatea
SARL4B]
gi|334892467|gb|EGM30700.1| RNA methylase, NOL1/NOP2/sun family protein [Halorhabdus tiamatea
SARL4B]
Length = 302
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 146/284 (51%), Gaps = 9/284 (3%)
Query: 100 KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGF 159
+P P +R NTLKT L G+ + + +W GL+ P G+ Y+ G+
Sbjct: 23 RPLPSVVRVNTLKTTVERAKAALETEGIAYEAV-EWHD-GLLRLPDDSP-GSNWPYVQGW 79
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSL 219
Q S LP + L P +RV D AAPG KTT +AALM + G I A + RL +L
Sbjct: 80 LHGQEEVSALPPVVLDPSPGDRVWDATAAPGSKTTQLAALMHDEGTIVATDNNLGRLSAL 139
Query: 220 TANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLE 278
+N R+GVTN V N D N K D L+D PCS G I K+ SL+
Sbjct: 140 RSNAERLGVTNLAVTNEDARNHSLKPFDGAQYDHALVDVPCSCEGTIRKNPDTLDEWSLD 199
Query: 279 DIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338
+ + QK ++ AI++ ++ GG +VYSTC+ ENEAV+D+AL++ +LV
Sbjct: 200 HVAGIASAQKGILRRAIEV----TEPGGTVVYSTCTFAPEENEAVLDFALEETSARLVSV 255
Query: 339 GLDF-GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
L R G + F S+EK R YPH+++ GFFVAKL+
Sbjct: 256 DLPLESRPGVTAWDGETFDSSVEKAHRVYPHLNDTGGFFVAKLE 299
>gi|197336252|ref|YP_002156071.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri MJ11]
gi|226725346|sp|B5FE06.1|RSMF_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197317742|gb|ACH67189.1| ribosomal RNA small subunit methyltransferase F [Vibrio fischeri
MJ11]
Length = 473
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 157/301 (52%), Gaps = 21/301 (6%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK + + +L+P+ W G + V +
Sbjct: 27 EFIAACKRPLRRSIRVNTLKNSVEEFKQRAAEKQWDLEPVP-WCDTGFWITRPESDTVKL 85
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+MAG + +Q ASS +PV AL + E +DMA+APG KTT +AA MKN G +
Sbjct: 86 GSTAEHMAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGALV 145
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE +SR+K L +N+ R GV+N + ++DG L T D +LLDAPCSG G I K
Sbjct: 146 ANEFSSSRVKVLCSNIQRCGVSNVALTHFDGRVFGGWLP-ETFDSILLDAPCSGEGTIRK 204
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + + Q+ LI +A + K GG +VYSTC++ EN+ + +
Sbjct: 205 DPDAMHNWSPESVIEIGDTQRDLIESAFHAL----KPGGVMVYSTCTLNHEENQNICHHL 260
Query: 328 LKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385
+++ V P G F +E H YP + + +GFFVAK++K S+
Sbjct: 261 VEQFGDAVTFKPLGDLFENAEKALTKEGFLH--------IYPQIFDSEGFFVAKIRKNSS 312
Query: 386 S 386
+
Sbjct: 313 T 313
>gi|269839713|ref|YP_003324405.1| RNA methylase [Thermobaculum terrenum ATCC BAA-798]
gi|269791443|gb|ACZ43583.1| RNA methylase, NOL1/NOP2/sun family [Thermobaculum terrenum ATCC
BAA-798]
Length = 325
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 163/297 (54%), Gaps = 13/297 (4%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152
E++E+ +PR + LR N L+ RR++ L G L+P+S ++ ++ ++ + AT
Sbjct: 27 EVLEALCEPRVVALRVNPLRADRREVVAELEAEGFALEPVSWYADAFILRTGTKRELMAT 86
Query: 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK 212
Y G LQ +S +PV+ LAP+ ERV+D+AAAPG KTT +AALM N+G I AN++
Sbjct: 87 AAYAEGKIYLQDLASMVPVLVLAPRPGERVLDLAAAPGSKTTQMAALMGNSGEIVANDVS 146
Query: 213 ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS-KDESV 271
+R L ANL + GV+ V G L + DR LLDAPCS G+ + D +
Sbjct: 147 PARRFKLVANLRQQGVSIARVTAIRGEVLWRSYP-EEFDRTLLDAPCSMEGMFNCSDPAT 205
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
S ++ + Q L+ +A+ + ++ GG IVYSTC++ ENE V+D+ L K
Sbjct: 206 YEHWSPRKVKVLARRQAHLLRSAV----SATRVGGVIVYSTCTLSPEENEGVVDWLLHKE 261
Query: 332 D--VKLVPC---GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
V+L P GL+ G ++ F P + T R P M+GFFVA+++K+
Sbjct: 262 GDAVELEPVELPGLELW-PGLASWQGRSFDPRVSLTARILPS-RLMEGFFVARIRKV 316
>gi|323487165|ref|ZP_08092470.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
gi|323692320|ref|ZP_08106559.1| fmu domain-containing protein [Clostridium symbiosum WAL-14673]
gi|355629664|ref|ZP_09050495.1| hypothetical protein HMPREF1020_04574 [Clostridium sp. 7_3_54FAA]
gi|323399517|gb|EGA91910.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
gi|323503645|gb|EGB19468.1| fmu domain-containing protein [Clostridium symbiosum WAL-14673]
gi|354819057|gb|EHF03513.1| hypothetical protein HMPREF1020_04574 [Clostridium sp. 7_3_54FAA]
Length = 461
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 156/298 (52%), Gaps = 19/298 (6%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E E +ES+++ R LR N LKT R + L L+P+ W++ G Y Q
Sbjct: 18 EYGEFLESYDRERSQGLRLNLLKTGREEF---LAKTSFMLEPIP-WAESGFY-YQPQDRP 72
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
G P + AG Y +Q S+ V L PQ E+V+D+ AAPGGKTT IA+ ++ G + +N
Sbjct: 73 GRHPYHEAGVYYIQEPSAMAVVSFLDPQPGEKVLDLCAAPGGKTTQIASRLQGKGFLLSN 132
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
E+ +R + L+ N+ RMGV N +V N D L + DR+ +DAPCSG G+ KDE
Sbjct: 133 EIHPARARILSQNVERMGVRNAVVTNEDSGRLAEYF-PEFFDRIAVDAPCSGEGMFRKDE 191
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
S E+++ C+ Q++++ A M+ K+GG +VYSTC+ ENE ++ +
Sbjct: 192 EAVREWSTENVEHCALRQQEILANAARML----KAGGRLVYSTCTFAPQENEMAVETFIA 247
Query: 330 KR---DVKLVPC--GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
++ P GL G VR + +E T R +PH +G F+A L+K
Sbjct: 248 GHPEFTIEETPVYEGLSSG----VREWGNGSAAGIENTVRIWPHRTRGEGHFIAVLRK 301
>gi|335039089|ref|ZP_08532274.1| RNA methylase, NOL1/NOP2/sun family [Caldalkalibacillus thermarum
TA2.A1]
gi|334181016|gb|EGL83596.1| RNA methylase, NOL1/NOP2/sun family [Caldalkalibacillus thermarum
TA2.A1]
Length = 465
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 162/323 (50%), Gaps = 23/323 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149
E +S+E+PR LR NTLK + + L +L+P+ W+K G +++ P
Sbjct: 18 EAQAFFQSYEQPRHYGLRINTLKW---TVEEALQALPFHLEPVP-WAKEGFYFHEADRP- 72
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYAN 209
P Y AG Y +Q S+ P + + ++V+D+ AAPGGK+T IAA +K G++ +N
Sbjct: 73 AKHPYYHAGLYYIQEPSAMAPGAMIPIEPGDKVLDLCAAPGGKSTQIAARLKGKGVLVSN 132
Query: 210 EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDE 269
++ A R+K L NL GV N IV N L V G D++++DAPCSG G+ K+
Sbjct: 133 DISAERVKPLVKNLELFGVRNGIVTNETPERLAAVFG-TYFDKIVIDAPCSGEGMFRKNP 191
Query: 270 SVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329
+ S I+ C+ +Q+ ++ A M+ K GG ++YSTC+ ENE I L
Sbjct: 192 EMVKSWETHHIEMCTVMQRDILDQAARML----KPGGLMLYSTCTFAPEENEGQIAQFLS 247
Query: 330 KR------DVKLVPCGLDFGRQGFVRFRE--HRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ ++ +VP G GR + E L +T R +PH +G F+A L+
Sbjct: 248 RHPHFEVEEISMVP-GFQLGRPEWASEEELSESMKQKLRRTVRLWPHHVRGEGHFLALLR 306
Query: 382 KMSNSKKTS----AGPQPSETVE 400
K +K A P P T++
Sbjct: 307 KTDGEEKPCREEQAAPLPERTLQ 329
>gi|75910625|ref|YP_324921.1| rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
Length = 449
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 166/321 (51%), Gaps = 17/321 (5%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
LG + + +++I +E E +L E + + LR N L+T ++ L + GV
Sbjct: 145 LGILHSFPDWIIKVWLEQLGLTETEKLCEWMNQTPTLDLRVNPLRTSVAEVETALKSAGV 204
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
P+ + L + + I P + G++++Q AS+ L L PQ E +ID A
Sbjct: 205 LARPIPHLPQ-ALRLIGNTGSIQKLPGFSQGWWVVQDASAQLVSHLLDPQPGEVIIDACA 263
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTT+IA LMK+ G ++A + ASRL+ L N R+ + + +C D LP+
Sbjct: 264 APGGKTTHIAELMKDQGKVWAGDRTASRLRKLKENAQRLNLHSIEICTGDSRNLPQF--Y 321
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
N DRVLLDAPCSG G + + + ++ E +Q+ S LQ++L+ V K GG
Sbjct: 322 NVADRVLLDAPCSGLGTLHRHADARWRQTPESVQELSTLQQELLSHTSKFV----KVGGV 377
Query: 308 IVYSTCSIMVTENEAVI-DYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFY 366
+VY+TC++ ENE VI ++ + D ++ P D + + + + +
Sbjct: 378 LVYATCTLHPAENEEVITEFMARNSDWQIEPPSPDSPYSDYT---------TPQGWLKVW 428
Query: 367 PHVHNMDGFFVAKLKKMSNSK 387
PH +MDGFF+ +L+K + S+
Sbjct: 429 PHNQDMDGFFMVRLRKTNVSE 449
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,535,925,189
Number of Sequences: 23463169
Number of extensions: 317345123
Number of successful extensions: 1303474
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6599
Number of HSP's successfully gapped in prelim test: 4461
Number of HSP's that attempted gapping in prelim test: 1223156
Number of HSP's gapped (non-prelim): 46493
length of query: 496
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 349
effective length of database: 8,910,109,524
effective search space: 3109628223876
effective search space used: 3109628223876
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 79 (35.0 bits)