BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011002
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 168/293 (57%), Gaps = 11/293 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTLK +DL L +G + W+K G + I +
Sbjct: 33 IRIAEAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVP-WAKEGFCLTREPFSITS 91
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPE++ G +Q ASS P +AL P+ E V D AAAPGGKT+Y+A L +N G+IYA ++
Sbjct: 92 TPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDV 151
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDAPCSGTGVISKDES 270
+RL+ NL R+GV N I+ + + + LN D++LLDAPC+G+G I K+
Sbjct: 152 DENRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPE 208
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
K +++ +DI+ C LQ +L+ ++++ K GG +VYSTCS+ ENE VI +AL
Sbjct: 209 RKWNRTXDDIKFCQGLQXRLLEKGLEVL----KPGGILVYSTCSLEPEENEFVIQWALDN 264
Query: 331 RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+P L +G ++ RR YP VH GFF+AK++K+
Sbjct: 265 FDVELLP--LKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 315
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 168/287 (58%), Gaps = 34/287 (11%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L N+GV L+ + V S IG+TPEY+ G+YM QS
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+ +R K+L +N++R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + K+ +V S EDI+ C
Sbjct: 131 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYC 186
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC---- 338
S QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR DV+L+
Sbjct: 187 SLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANE 242
Query: 339 --GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
G++ ++G+++ F P+ + FF+AKL+K+
Sbjct: 243 FKGINI-KEGYIKGTLRVFPPN--------------EPFFIAKLRKI 274
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 169/321 (52%), Gaps = 38/321 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV D+AAAPG KTT I+A N G
Sbjct: 87 GSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ---RVXDVAAAPGSKTTQISARXNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEXFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQPSETV 399
+L+K ++ A P P V
Sbjct: 307 RLRK---TQAIPALPAPKYKV 324
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 145/290 (50%), Gaps = 39/290 (13%)
Query: 104 ICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP----------IGATP 153
I +R NTLK ++ L GV VV +VP +
Sbjct: 187 ISIRVNTLKANVEEVIGELEEDGVE------------VVRSERVPTILKIKGPYNFDTSS 234
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
+ G ++Q +S + + L P+ E V+D+AAAPGGKTT++A LMKN G IYA ++
Sbjct: 235 AFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK 294
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKT 273
R+K L + RMG+ D + P+++G D+VLLDAPC+ +G I K+ ++
Sbjct: 295 MRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRW 354
Query: 274 SKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-D 332
+ I + S LQ++L+ +A +V K GG ++Y+TCSI ENE I + L +
Sbjct: 355 RLREDKINEMSQLQRELLESAARLV----KPGGRLLYTTCSIFKEENEKNIRWFLNVHPE 410
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
KLVP + GF LE T R +PH H+ GFF A L+K
Sbjct: 411 FKLVPLKSPYD-PGF-----------LEGTMRAWPHRHSTIGFFYALLEK 448
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 139/292 (47%), Gaps = 27/292 (9%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSK--WSKVGLVVYDSQVPIGATPEYMAGFYMLQ 163
LR NTLK L R ++ PL W + G Y + G P + AG Y +Q
Sbjct: 34 LRVNTLK-----LPPEAFQR-ISPWPLRPIPWCQEGFY-YPEEARPGPHPFFYAGLYYIQ 86
Query: 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223
S+ + L P+ ERV+D+AAAPGGKTT++AA M GL+ ANE+ R++ L N+
Sbjct: 87 EPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENV 146
Query: 224 HRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
R G V L + G RVLLDAPCSG G+ KD ++
Sbjct: 147 ERWGAP-LAVTQAPPRALAEAFG-TYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRM 204
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR------DVKLVP 337
+ +QK L+ A ++ GG +VYSTC+ ENE V+ + LK D +L P
Sbjct: 205 AEVQKALLAQASRLLG----PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDARLHP 260
Query: 338 CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKT 389
F G + E +P L KT R +PH +G F+A+ +K + T
Sbjct: 261 L---FA-PGVPEWGEG--NPELLKTARLWPHRLEGEGHFLARFRKEGGAWST 306
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 140/296 (47%), Gaps = 27/296 (9%)
Query: 102 RPICLRTNTLKTRRRDLADVLINRGVNLDPLSK--WSKVGLVVYDSQVPIGATPEYMAGF 159
R LR NTLK L R ++ PL W + G Y + G P + AG
Sbjct: 30 RTYGLRVNTLK-----LPPEAFQR-ISPWPLRPIPWCQEGFY-YPEEARPGPHPFFYAGL 82
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSL 219
Y +Q S+ + L P+ ERV+D+AAAPGGKTT++AA M GL+ ANE+ R++ L
Sbjct: 83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGL 142
Query: 220 TANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLED 279
N+ R G V L + G RVLLDAPCSG G+ KD
Sbjct: 143 LENVERWGAP-LAVTQAPPRALAEAFG-TYFHRVLLDAPCSGEGMFRKDREAARHWGPSA 200
Query: 280 IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR------DV 333
++ + +QK L+ A ++ GG +VYSTC+ ENE V+ + LK D
Sbjct: 201 PKRMAEVQKALLAQASRLLG----PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDA 256
Query: 334 KLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKT 389
+L P F G + E +P L KT R +PH +G F+A+ +K + T
Sbjct: 257 RLHPL---FA-PGVPEWGEG--NPELLKTARLWPHRLEGEGHFLARFRKEGGAWST 306
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 138/296 (46%), Gaps = 27/296 (9%)
Query: 102 RPICLRTNTLKTRRRDLADVLINRGVNLDPLSK--WSKVGLVVYDSQVPIGATPEYMAGF 159
R LR NTLK L R ++ PL W + G Y + G P + AG
Sbjct: 30 RTYGLRVNTLK-----LPPEAFQR-ISPWPLRPIPWCQEGFY-YPEEARPGPHPFFYAGL 82
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSL 219
Y +Q S+ + L P+ ERV+D+AAAPGGKTT++AA GL+ ANE+ R++ L
Sbjct: 83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEVDGKRVRGL 142
Query: 220 TANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLED 279
N+ R G V L + G RVLLDAPCSG G KD
Sbjct: 143 LENVERWGAP-LAVTQAPPRALAEAFG-TYFHRVLLDAPCSGEGXFRKDREAARHWGPSA 200
Query: 280 IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR------DV 333
++ + +QK L+ A ++ GG +VYSTC+ ENE V+ + LK D
Sbjct: 201 PKRXAEVQKALLAQASRLLG----PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDA 256
Query: 334 KLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKT 389
+L P F G + E +P L KT R +PH +G F+A+ +K + T
Sbjct: 257 RLHPL---FA-PGVPEWGEG--NPELLKTARLWPHRLEGEGHFLARFRKEGGAWST 306
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 17/231 (7%)
Query: 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKAS 214
+ AG+ Q S+ + A A + E+V+D+ AAPGGK+T +AA K GL+ NE+
Sbjct: 82 HQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFPK 141
Query: 215 RLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDAPCSGTGVISKDESVKT 273
R K L+ N+ R GV+N IV N+ EL P G DR+++DAPCSG G KD +
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGF--FDRIVVDAPCSGEGXFRKDPNAIK 199
Query: 274 SKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333
+ E C Q++++ +AI + K+ G ++YSTC+ ENE +I + ++ V
Sbjct: 200 EWTEESPLYCQKRQQEILSSAIKXL----KNKGQLIYSTCTFAPEENEEIISWLVENYPV 255
Query: 334 KL--VPC--GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 380
+ +P + GR E LEKT R +PH +G FVAKL
Sbjct: 256 TIEEIPLTQSVSSGRS------EWGSVAGLEKTIRIWPHKDQGEGHFVAKL 300
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 149/314 (47%), Gaps = 31/314 (9%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ L + +P + ++E+ + P+ LR N R +L G+ P
Sbjct: 143 YLHPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFP 201
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ + V ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGG
Sbjct: 202 HADYPDA--VRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+I + ++ A ++ RL + NL R+G+ T V DG + G D
Sbjct: 260 KTTHILEVAPEAQVV-AVDIDEQRLSRVYDNLKRLGMKAT-VKQGDGRYPSQWCGEQQFD 317
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
R+LLDAPCS TGVI + +K + DI + + LQ ++ +D + + K+GG +VY+
Sbjct: 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEI----LDAIWPHLKTGGTLVYA 373
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGL--DFGRQGFVRFREHRFHPSLEKTRRFYPH 368
TCS++ EN I L++ D +L G G+Q P
Sbjct: 374 TCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNL-------------------PG 414
Query: 369 VHNMDGFFVAKLKK 382
DGFF AKL K
Sbjct: 415 AEEGDGFFYAKLIK 428
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 143/312 (45%), Gaps = 40/312 (12%)
Query: 103 PICLRTNTLKTRRRDLADVLINRGVN--------------------LDPLSKWSKVGLVV 142
P +R NTLKT D+ D +G + LDPL L+V
Sbjct: 11 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPE----LLV 66
Query: 143 YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN 202
+ +Q + P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN
Sbjct: 67 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 126
Query: 203 TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDAPCSG 261
G I+A ++ A RL S+ L R GV+ + D + P + V +LLD CSG
Sbjct: 127 QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG 186
Query: 262 TGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
+G+ S+ +E + S + + Q++ + A+ S +VYSTCS+ E
Sbjct: 187 SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTF-----PSLQRLVYSTCSLCQEE 241
Query: 320 NEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
NE V+ AL++ +L P + +G F P E R P GFFV
Sbjct: 242 NEDVVRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFV 295
Query: 378 AKLKKMSNSKKT 389
A ++++ ++
Sbjct: 296 AVIERVEVPRRA 307
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 22/182 (12%)
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL---IYANEMKASRL 216
Y L A+S LPV+AL Q + V+D+ AAPGGKT AL++ TG + AN++ SR+
Sbjct: 130 YYLXDAASLLPVLALGLQPGDIVLDLCAAPGGKTL---ALLQ-TGCCRNLAANDLSPSRI 185
Query: 217 KSLTANLH-------RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT--GVISK 267
L LH R G V ++DG + ++ G +T DRVL+D PC+ + +
Sbjct: 186 ARLQKILHSYVPEEIRDG-NQVRVTSWDGRKWGELEG-DTYDRVLVDVPCTTDRHSLHEE 243
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
+ ++ ++ Q LQ QL+ A + +K GG++VYSTCS+ +NE V+ A
Sbjct: 244 ENNIFKRSRKKERQILPVLQVQLLAAGL----LATKPGGHVVYSTCSLSHLQNEYVVQGA 299
Query: 328 LK 329
++
Sbjct: 300 IE 301
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 22/182 (12%)
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL---IYANEMKASRL 216
Y L A+S LPV+AL Q + V+D+ AAPGGKT AL++ TG + AN++ SR+
Sbjct: 131 YYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTL---ALLQ-TGCCRNLAANDLSPSRI 186
Query: 217 KSLTANLH-------RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG--TGVISK 267
L LH R G V ++DG + ++ G +T DRVL+D PC+ + +
Sbjct: 187 ARLQKILHSYVPEEIRDG-NQVRVTSWDGRKWGELEG-DTYDRVLVDVPCTTDRHSLHEE 244
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
+ ++ ++ Q LQ QL+ A + +K GG++VYSTCS+ +NE V+ A
Sbjct: 245 ENNIFKRSRKKERQILPVLQVQLLAAGL----LATKPGGHVVYSTCSLSHLQNEYVVQGA 300
Query: 328 LK 329
++
Sbjct: 301 IE 302
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
+E V+D+ G Y++ ++ G +YA +++ + ++++G+ N V
Sbjct: 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS 95
Query: 237 DGNELPKVLGLNTVDRVLL 255
+ N++P L NTVD + +
Sbjct: 96 EENKIP--LPDNTVDFIFM 112
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGF 347
+ +S CS+ +N A+ D+ ++K + P +FGR+G
Sbjct: 264 VTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGL 303
>pdb|1WHU|A Chain A, Solution Structure Of The Alpha-Helical Domain From Mouse
Hypothetical Pnpase
Length = 104
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 36 RIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELI 95
+I + ++ + F D SR E V +++LD + L E FP V+ E+I
Sbjct: 23 KIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEH----------LKEKFPEVDQFEII 72
Query: 96 ESFEKPRPICLRTNTLKTRRR 116
ESF R+ L +R
Sbjct: 73 ESFNIVAKEVFRSIILNEYKR 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,558,082
Number of Sequences: 62578
Number of extensions: 536300
Number of successful extensions: 1122
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 17
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)