BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011002
(496 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/454 (58%), Positives = 337/454 (74%), Gaps = 16/454 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP E +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPPAGETDQDGQAP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 LLINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSNGDK 413
TRRFYPH HNMDGFF+AK KK SNS +A P + +Q TP+S NG +
Sbjct: 550 STRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKSE--NGSQ 607
Query: 414 KTEENSEQVLMKKATTKAKDLKK---KTSGLAEN 444
T++ V K+ + KK K +G+A+
Sbjct: 608 PTKKARGAVKAKQQLLRQPHSKKPFQKLNGIAKG 641
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/361 (65%), Positives = 296/361 (81%), Gaps = 4/361 (1%)
Query: 27 PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
P DL +Q RI+EIVRVL++FK+L + G +R EYV QL D+ +YYGY+ FL L E+F
Sbjct: 188 PQDLSQIQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELF 247
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
E +E E+ E PRP+ +RTNTLKT+RR+LA LINRGVNL+P+ KWSKVGL V++SQ
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSKVGLQVFESQ 307
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DM++APGGK TY+AAL KNTG+I
Sbjct: 308 VPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGII 367
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCSGTGVI 265
+AN+ +R K+L+AN+HR+GV N IVCNYDG + P +V+G DRVLLDAPCSGTGVI
Sbjct: 368 FANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIG--GFDRVLLDAPCSGTGVI 425
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD+SVKT+KS D S+LQ+QL+L+AID V+A+SK+GG+IVYSTCSI V E+EAVI
Sbjct: 426 YKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQ 485
Query: 326 YALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
YALKKR +VKLV GL+FGR+GF RFRE RFHPSL+ TRR+YPHVHN+DGFFVAKLKK+S
Sbjct: 486 YALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKLKKIS 545
Query: 385 N 385
+
Sbjct: 546 D 546
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 480 bits (1236), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 185 bits (469), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 168/287 (58%), Gaps = 34/287 (11%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L N+GV L+ + V S IG+TPEY+ G+YM QS
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+ +R K+L +N++R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + K+ +V S EDI+ C
Sbjct: 131 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYC 186
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC---- 338
S QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR DV+L+
Sbjct: 187 SLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANE 242
Query: 339 --GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
G++ ++G+++ F P+ + FF+AKL+K+
Sbjct: 243 FKGINI-KEGYIKGTLRVFPPN--------------EPFFIAKLRKI 274
>sp|C3LMI5|RSMF_VIBCM Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=rsmF PE=3 SV=2
Length = 473
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>sp|Q9KRY1|RSMF_VIBCH Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmF PE=3 SV=2
Length = 473
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 166/299 (55%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL ++ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++LI +A + + GG +VYSTC++ EN++VI++
Sbjct: 206 DADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVIEWL 261
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 262 LSRYPQAVEILPLGELFPGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
>sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2
Length = 474
Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 177/333 (53%), Gaps = 30/333 (9%)
Query: 74 YNEFLIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+N+ I ++ + P ME I KP +R NTLK ++ ++ +G + DP+
Sbjct: 4 FNQNFINSIKQDLPSHLCMEDFISYSSKPLRPSIRVNTLKISSKNFIKLMTPKGWHFDPI 63
Query: 133 SKWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK----ERVIDMAA 187
W + G + D +V +G T E++ G + +Q ASS LP AL E+ + V+DMA+
Sbjct: 64 P-WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMAS 122
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APG KTT IAALM N GL+ ANE ASR+K L AN+ RMGV N + ++D + +
Sbjct: 123 APGSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYM-F 181
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
D VLLDAPCSG G I KD + D++ QK LI +A + K+GG
Sbjct: 182 EIFDSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSL----KAGGE 237
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT----- 362
+VYSTC++ EN+ V DY LK+R P ++F P +K+
Sbjct: 238 LVYSTCALSRQENQNVCDY-LKQR----YPDAVEF-------INLSSLFPGADKSCTEEG 285
Query: 363 -RRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQ 394
+P +++ +GFFVAK+KK+S+ ++ P+
Sbjct: 286 FLHVWPQIYDSEGFFVAKIKKVSSIERVLPEPK 318
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 165/300 (55%), Gaps = 23/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W + G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALA---PQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
G+T E+++G + +Q ASS LPV AL PQ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNPQ-PERVMDVAAAPGSKTTQIAARMGNAGGI 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVR 204
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + S E + Q++LI +A + + GG +VYSTC++ EN++V+ +
Sbjct: 205 KDADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVVQW 260
Query: 327 ALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 261 LLSRYPQAVEILPLGDLFSGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
>sp|A0KKI5|RSMF_AERHH Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rsmF PE=3 SV=2
Length = 475
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 165/317 (52%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK + G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL E+ R ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+ANL R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ + EN+A
Sbjct: 201 GSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSLQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT------RRFYPHVHNMDGFF 376
V L K FG F P+ E+ +P + + +GFF
Sbjct: 257 VCQSLLDK-----------FG-AAFSFDSLADLFPAAEQACTPEGYLHVWPQIFDSEGFF 304
Query: 377 VAKLKKMSNSKKTSAGP 393
VA+L+K + T P
Sbjct: 305 VARLRKHYSVPNTMFKP 321
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 168/315 (53%), Gaps = 26/315 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 NSKKTSAGPQPSETV 399
+ A P P V
Sbjct: 313 S---LPAMPAPGYKV 324
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGTIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|Q57NF9|RSMF_SALCH Ribosomal RNA small subunit methyltransferase F OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmF PE=3 SV=2
Length = 479
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGTIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPTP 320
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPTP 320
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCMW-LKETYPDAVEFLPLGELFPAANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 171/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCMW-LKETYPDAVEFLPLGELFPAANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 165/311 (53%), Gaps = 26/311 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV--YDSQVPIG 150
E + S +P +R NTLK D + G D + W + G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKISVSDFVMQMQPLGWQFDAV-PWCETGFWLTRADESVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL ++ + ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSQQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
V L+K L LD F E P E +P + + +GFFVA+L+K
Sbjct: 257 VCQSLLEKFGDALT---LDSLADLFPN-AEQACTP--EGYLHVWPQIFDSEGFFVARLRK 310
Query: 383 MSNSKKTSAGP 393
+ T P
Sbjct: 311 HHSVPNTMFKP 321
>sp|B5BHA6|RSMF_SALPK Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmF PE=3 SV=1
Length = 479
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEDVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|Q5PHN5|RSMF_SALPA Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmF PE=3
SV=1
Length = 479
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEDVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|B4TKI0|RSMF_SALHS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
heidelberg (strain SL476) GN=rsmF PE=3 SV=2
Length = 479
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|B5R8V2|RSMF_SALG2 Ribosomal RNA small subunit methyltransferase F OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmF PE=3
SV=1
Length = 479
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|B5R2S1|RSMF_SALEP Ribosomal RNA small subunit methyltransferase F OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmF PE=3 SV=1
Length = 479
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|B5FTI4|RSMF_SALDC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
dublin (strain CT_02021853) GN=rsmF PE=3 SV=1
Length = 479
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 23/301 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
LK+ V+ +P G F E H +P +++ +GFFVA+L+KMS
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARLRKMS 312
Query: 385 N 385
+
Sbjct: 313 S 313
>sp|B2VJ83|RSMF_ERWT9 Ribosomal RNA small subunit methyltransferase F OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmF PE=3
SV=1
Length = 478
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 167/317 (52%), Gaps = 24/317 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQ 146
E I S + P LR NTLK D ++ L P+ W + G +
Sbjct: 26 EFQRFITSSQLPLRRSLRVNTLKISVDDFLTLVEPYQWALTPI-PWCQEGFWISRDDADT 84
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+P+G+T E++AG + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M N G
Sbjct: 85 LPLGSTAEHLAGLFYIQEASSMLPVSALFDGGDMPQRVMDMAAAPGSKTTQIAAHMGNRG 144
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L ANL R GV+NT + ++DG L D VLLDAPCSG GV
Sbjct: 145 AILANEYSASRVKVLHANLSRCGVSNTAMTHFDGRVFGPALP-ECFDAVLLDAPCSGEGV 203
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S ++ + Q+ LI +A + + GG +VYSTC++ EN+ V+
Sbjct: 204 VRKDADALRNWSQSSTEEIAATQQALINSAFHAL----RPGGTLVYSTCTLNTRENQQVV 259
Query: 325 DYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ L++ VK+ P LD G R + E +PH+ + +GFFVA+L+K
Sbjct: 260 NGLLEQYPDAVKVEP--LDTLFMGAER------ATTAEGYLHVFPHIFDSEGFFVARLRK 311
Query: 383 MSNSKKTSAGPQPSETV 399
+++ PQP V
Sbjct: 312 VASVPPM---PQPGYKV 325
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 172 bits (435), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFANGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 171 bits (434), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 29/301 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 K 382
K
Sbjct: 310 K 310
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 171 bits (434), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLRLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDIAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 TILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGTNKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPTP 320
>sp|B7NBI3|RSMF_ECOLU Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 167/314 (53%), Gaps = 32/314 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----CPGGTLVYSTCTLNQEENEAVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ LK+ V+ +P G F E H +P +++ +GFFVA+L+
Sbjct: 259 RW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARLR 309
Query: 382 KMSNSKKTSAGPQP 395
K ++ A P P
Sbjct: 310 K---TQAIPALPAP 320
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 35/304 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKK 382
+L+K
Sbjct: 307 RLRK 310
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT---VDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KLKKMSNSKKTSAGPQP 395
+L+K ++ A P P
Sbjct: 307 RLRK---TQAIPALPAP 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,125,334
Number of Sequences: 539616
Number of extensions: 7804730
Number of successful extensions: 35740
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 522
Number of HSP's that attempted gapping in prelim test: 31562
Number of HSP's gapped (non-prelim): 3076
length of query: 496
length of database: 191,569,459
effective HSP length: 122
effective length of query: 374
effective length of database: 125,736,307
effective search space: 47025378818
effective search space used: 47025378818
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)